Your job contains 1 sequence.
>001912
MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALA
DPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQ
NNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH
LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF
ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM
LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR
PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT
VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH
DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL
KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS
AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS
ATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFR
AINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLF
ESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELC
YLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTI
NDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTN
CQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001912
(997 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2142753 - symbol:AT5G07810 species:3702 "Arabi... 1416 1.8e-289 3
MGI|MGI:1918362 - symbol:Zranb3 "zinc finger, RAN-binding... 391 5.6e-67 4
UNIPROTKB|Q5FWF4 - symbol:ZRANB3 "DNA annealing helicase ... 386 2.9e-66 4
UNIPROTKB|E2RK04 - symbol:ZRANB3 "Uncharacterized protein... 376 1.8e-65 4
UNIPROTKB|E1BSZ6 - symbol:ZRANB3 "Uncharacterized protein... 388 7.6e-65 3
UNIPROTKB|E1BB03 - symbol:ZRANB3 "DNA annealing helicase ... 378 1.4e-64 3
UNIPROTKB|E1BSZ4 - symbol:ZRANB3 "Uncharacterized protein... 388 2.4e-64 3
UNIPROTKB|F5GYN7 - symbol:ZRANB3 "Endonuclease ZRANB3" sp... 355 2.5e-62 4
ZFIN|ZDB-GENE-060712-1 - symbol:zranb3 "zinc finger, RAN-... 388 3.3e-56 2
UNIPROTKB|Q0P4U8 - symbol:smarcal1 "SWI/SNF-related matri... 385 1.1e-54 2
UNIPROTKB|Q498E7 - symbol:smarcal1 "SWI/SNF-related matri... 382 3.3e-54 2
UNIPROTKB|F1P0X4 - symbol:SMARCAL1 "Uncharacterized prote... 385 7.9e-54 2
UNIPROTKB|F1S0D5 - symbol:ZRANB3 "Uncharacterized protein... 275 1.4e-53 3
ZFIN|ZDB-GENE-041210-303 - symbol:smarcal1 "SWI/SNF relat... 397 2.9e-52 2
UNIPROTKB|Q9NZC9 - symbol:SMARCAL1 "SWI/SNF-related matri... 352 1.7e-50 2
TAIR|locus:2007775 - symbol:CHR18 "chromatin remodeling f... 341 2.8e-49 2
UNIPROTKB|K7DXW5 - symbol:Bt.28179 "Uncharacterized prote... 240 3.4e-48 5
MGI|MGI:1859183 - symbol:Smarcal1 "SWI/SNF related matrix... 338 9.1e-48 2
RGD|1306134 - symbol:Smarcal1 "Swi/SNF related matrix ass... 346 1.0e-47 2
UNIPROTKB|E2RGL2 - symbol:SMARCAL1 "Uncharacterized prote... 346 1.5e-46 2
UNIPROTKB|F1MDP3 - symbol:SMARCAL1 "SWI/SNF-related matri... 338 5.0e-46 2
UNIPROTKB|Q9TTA5 - symbol:SMARCAL1 "SWI/SNF-related matri... 332 2.3e-45 2
UNIPROTKB|H7BYI2 - symbol:SMARCAL1 "SWI/SNF-related matri... 262 4.8e-45 3
FB|FBgn0031655 - symbol:Marcal1 "Marcal1" species:7227 "D... 321 4.9e-42 2
RGD|1564952 - symbol:Zranb3 "zinc finger, RAN-binding dom... 282 7.4e-42 2
UNIPROTKB|F8WCT9 - symbol:ZRANB3 "Endonuclease ZRANB3" sp... 386 2.2e-41 2
WB|WBGene00015806 - symbol:C16A3.1 species:6239 "Caenorha... 301 1.3e-40 2
UNIPROTKB|Q8MNV7 - symbol:C16A3.1 "Putative SMARCAL1-like... 301 1.3e-40 2
GENEDB_PFALCIPARUM|PFF0225w - symbol:PFF0225w "DNA helica... 338 4.3e-35 4
UNIPROTKB|C6KSP4 - symbol:PFF0225w "DNA helicase, putativ... 338 4.3e-35 4
GENEDB_PFALCIPARUM|PF13_0308 - symbol:PF13_0308 "DNA heli... 341 3.3e-27 1
UNIPROTKB|Q8IDD0 - symbol:PF13_0308 "DNA helicase, putati... 341 3.3e-27 1
DICTYBASE|DDB_G0274965 - symbol:DDB_G0274965 "CHR group p... 342 7.2e-26 3
ZFIN|ZDB-GENE-040426-892 - symbol:chd1l "chromodomain hel... 202 3.2e-25 2
DICTYBASE|DDB_G0281559 - symbol:DDB_G0281559 "CHR group p... 335 4.0e-25 2
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 217 1.5e-20 2
UNIPROTKB|F1SDB8 - symbol:CHD1L "Uncharacterized protein"... 180 3.0e-20 3
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 187 5.0e-20 2
POMBASE|SPBP35G2.10 - symbol:mit1 "SHREC complex subunit ... 170 5.6e-20 2
UNIPROTKB|F1Q2U2 - symbol:CHD1L "Uncharacterized protein"... 170 8.4e-20 3
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 196 1.8e-19 3
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 196 1.8e-19 3
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 185 2.0e-19 2
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 152 3.6e-19 3
SGD|S000001934 - symbol:IRC5 "Putative ATPase containing ... 180 4.2e-19 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 173 5.4e-19 2
UNIPROTKB|Q3B7N1 - symbol:CHD1L "Chromodomain-helicase-DN... 173 1.1e-18 3
UNIPROTKB|Q86WJ1 - symbol:CHD1L "Chromodomain-helicase-DN... 170 1.1e-18 3
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 161 1.6e-18 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 164 1.6e-18 2
UNIPROTKB|F1MFS2 - symbol:CHD1L "Chromodomain-helicase-DN... 173 1.7e-18 3
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 158 1.9e-18 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 157 2.7e-18 2
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 158 4.1e-18 2
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 159 4.5e-18 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 159 4.5e-18 2
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 159 4.5e-18 2
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 159 4.5e-18 2
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 159 4.5e-18 2
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 164 5.0e-18 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 157 6.0e-18 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 161 6.8e-18 2
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 163 7.1e-18 2
DICTYBASE|DDB_G0267556 - symbol:DDB_G0267556 "CHR group p... 176 7.1e-18 3
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 159 9.3e-18 2
GENEDB_PFALCIPARUM|PF08_0048 - symbol:PF08_0048 "ATP-depe... 176 1.2e-17 2
UNIPROTKB|C0H4W3 - symbol:PF08_0048 "Probable ATP-depende... 176 1.2e-17 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 154 1.9e-17 2
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 159 2.0e-17 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 160 2.0e-17 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 154 2.4e-17 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 157 3.0e-17 2
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 181 3.0e-17 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 159 3.0e-17 2
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 169 4.8e-17 3
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 175 5.1e-17 2
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 177 6.1e-17 3
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 161 7.2e-17 2
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 169 9.7e-17 3
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 154 1.5e-16 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 155 1.5e-16 2
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 177 1.8e-16 3
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 155 1.9e-16 3
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 154 2.0e-16 2
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 151 2.4e-16 2
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 152 2.5e-16 2
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 154 2.7e-16 3
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 153 4.7e-16 2
WB|WBGene00010845 - symbol:M03C11.8 species:6239 "Caenorh... 182 5.0e-16 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 153 5.2e-16 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 172 5.9e-16 3
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 151 7.2e-16 2
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 162 7.7e-16 2
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 148 8.7e-16 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 147 8.8e-16 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 157 9.0e-16 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 157 9.0e-16 2
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 161 9.6e-16 2
POMBASE|SPAC20G8.08c - symbol:fft1 "fun thirty related pr... 181 1.2e-15 2
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 176 1.3e-15 2
WARNING: Descriptions of 405 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2142753 [details] [associations]
symbol:AT5G07810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00546687 RefSeq:NP_196398.2 UniGene:At.32666
ProteinModelPortal:F4K856 SMR:F4K856 PRIDE:F4K856
EnsemblPlants:AT5G07810.1 GeneID:830674 KEGG:ath:AT5G07810
OMA:HQINMLW Uniprot:F4K856
Length = 1190
Score = 1416 (503.5 bits), Expect = 1.8e-289, Sum P(3) = 1.8e-289
Identities = 274/453 (60%), Positives = 333/453 (73%)
Query: 35 RQDAWRLSKCRKFSTEPTHFPKSALA--DPNS--TTQLPENFRVRLEICSPDSFSVTPLA 90
RQ +RL+KCRK P+ +P +T +PE FRVRLEICSPDSFSVTP+
Sbjct: 34 RQQDFRLAKCRKLDGSNDVCPQEGYRNYEPVRVLSTSVPEKFRVRLEICSPDSFSVTPVQ 93
Query: 91 IEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEV 150
++GF P E+ECLR+L + LSD +P HYTQN+ GGKA VYK+RDYN V CLK S +EV
Sbjct: 94 LQGFRCPEEQECLRQLRKILSDAIPLHYTQNDDGGKAGVYKIRDYNKVSGCLKRSKSVEV 153
Query: 151 EGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR 210
EG+PW TL VVEKLS S +G+W PC PEH ++E V+++I LP+ L++ +LPFQL+G+R
Sbjct: 154 EGVPWKTLAVVEKLSQSYISGKWQPCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLR 213
Query: 211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCL 270
FGLRRGGRC IADEMGLGKTLQAIAIA CFIS GSILVVCPA+LR +WAEELERWLP CL
Sbjct: 214 FGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCL 273
Query: 271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330
P+D+HLVFGH++NP +L R+P+VVVISY ML LR +M+E++WALLIVDESHH+RCSK+
Sbjct: 274 PSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKK 333
Query: 331 SEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
S+P E I+LLSGTPS+SRP+DIFHQINMLWPGLLGK KY+FAKTYC+V
Sbjct: 334 SDPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEV 393
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSE 450
V+G QG++FQDFSKG RL ELN+LL QTVMIRRLKQHLL Q S+
Sbjct: 394 GLVRGIQGKIFQDFSKGTRLLELNILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSD 453
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
I A A V + A + T K S E D +
Sbjct: 454 IALAMAIVSEAKKQKDGAIAEVTEK-SHEPDQN 485
Score = 732 (262.7 bits), Expect = 1.8e-289, Sum P(3) = 1.8e-289
Identities = 143/273 (52%), Positives = 183/273 (67%)
Query: 733 NDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTE 792
+D L++E + D VSQ TGRIHLYSC+PG D RPRP F++FRPEE++ +
Sbjct: 802 DDGLVKEVDSSSIFPLIDSLRFEVSQNTGRIHLYSCIPGKDPRPRPHFQNFRPEEIEASN 861
Query: 793 HISGCLKE--------NPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKE 844
G KE +P + AI F+ EW +LRPIE+ KLLGKPLQLPLS+EL YL E
Sbjct: 862 PSQGTTKEKNPESITDDPVHVLAILEFMKEWKSLRPIEKRKLLGKPLQLPLSLELSYLSE 921
Query: 845 TINHXXXXXXXXXXXRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEP 904
+ +H RR TP EIS PLP A W KV + SG ++KEKEYTQ W++++EP
Sbjct: 922 STSHNSEGLLRGGSKRRNTPFSEISIPLPENAVWIKVNLRSGHQRKEKEYTQAWSMSNEP 981
Query: 905 LCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLD 964
LCKLCQK C NAK EY EDLFC L CYE+YR RTS R++R+ IEHG+CTNC+LD
Sbjct: 982 LCKLCQKPCAGYNAKEPEYLEDLFCELACYEDYRTRTSSRYIRQ----IEHGICTNCKLD 1037
Query: 965 CHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
CH+LVK ++PL LE+RR YI + AP + +R+N+
Sbjct: 1038 CHQLVKRLRPLPLEKRRTYINKAAPELFARKNL 1070
Score = 674 (242.3 bits), Expect = 1.8e-289, Sum P(3) = 1.8e-289
Identities = 144/269 (53%), Positives = 182/269 (67%)
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD-IDVNPRSNKMI 534
D D C GK+SYQ+LGIAKLS FREWLS+HP+++ D + ID + S KM+
Sbjct: 501 DGPNSDKENQLC--GKLSYQQLGIAKLSAFREWLSLHPLLSGLDYTPEEIDGDRSSTKMV 558
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXXXXX 594
+FAHH KVLDG+QEFI +KGIGFVRIDG TLPRDRQ AV SFQ S+EVK
Sbjct: 559 VFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGV 618
Query: 595 XLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
LDFS+AQNVVFLELP++PSL+LQAEDRAHRRGQTSAVN+YIFCAKDT DES+WQNLNK
Sbjct: 619 GLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQNLNKK 678
Query: 655 LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPES- 713
L +SS T+GKYD EI + G S + ++++ SE L+ S K+ ES
Sbjct: 679 LHRISSTTDGKYDGKTEIEIGGASIFKPAEES---SEREVLEGQPSESNTVVADKIVESC 735
Query: 714 ----SEASDFRAINTNDEITAKMNDKLLE 738
+E I+ D++T+++ ++LE
Sbjct: 736 DDPGTETDVSNTIDLKDDMTSQL--EILE 762
>MGI|MGI:1918362 [details] [associations]
symbol:Zranb3 "zinc finger, RAN-binding domain containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036292 "DNA
rewinding" evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048478 "replication fork protection" evidence=ISO] [GO:0070530
"K63-linked polyubiquitin binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001876 InterPro:IPR002711
Pfam:PF00176 Pfam:PF00271 Pfam:PF01844 PROSITE:PS01358
PROSITE:PS50199 PROSITE:PS51194 SMART:SM00490 SMART:SM00547
MGI:MGI:1918362 GO:GO:0005524 GO:GO:0009411 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006281 GO:GO:0043596
GO:GO:0004386 InterPro:IPR003615 SMART:SM00507 GO:GO:0004520
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0045910 GO:GO:0031297 GO:GO:0048478
GO:GO:0070530 GeneTree:ENSGT00630000089754 HSSP:Q9ES54 CTD:84083
GO:GO:0036292 HOGENOM:HOG000031233 HOVERGEN:HBG062387 OMA:ACTEAVI
EMBL:AK050039 EMBL:AK083641 EMBL:BC066035 EMBL:BC117921
EMBL:BC117922 IPI:IPI00676562 RefSeq:NP_081954.1 UniGene:Mm.425048
ProteinModelPortal:Q6NZP1 SMR:Q6NZP1 PhosphoSite:Q6NZP1
PRIDE:Q6NZP1 Ensembl:ENSMUST00000086614 GeneID:226409
KEGG:mmu:226409 UCSC:uc007cld.1 InParanoid:Q6NZP1 OrthoDB:EOG42820X
NextBio:378126 Bgee:Q6NZP1 CleanEx:MM_ZRANB3 Genevestigator:Q6NZP1
Uniprot:Q6NZP1
Length = 1069
Score = 391 (142.7 bits), Expect = 5.6e-67, Sum P(4) = 5.6e-67
Identities = 98/248 (39%), Positives = 144/248 (58%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ + R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMK--SRTAARSKILLPMVQKAR--RAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q +G L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQ 433
LK +L Q
Sbjct: 257 LKSEVLSQ 264
Score = 237 (88.5 bits), Expect = 5.6e-67, Sum P(4) = 5.6e-67
Identities = 52/141 (36%), Positives = 73/141 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ + +
Sbjct: 338 SLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSI 397
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 398 QAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWA 457
Query: 650 NLNKSLRCVSSATNGKYDALQ 670
LN+ + S NG+ + LQ
Sbjct: 458 MLNRKAQVTGSTLNGRKEKLQ 478
Score = 161 (61.7 bits), Expect = 5.6e-67, Sum P(4) = 5.6e-67
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ TC+ + A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 888 KGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASAWDSRFCSLKCQEEFWIRSNNSYLRAQV 947
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVA 988
F EHGVC +C +D +L ++ + RK ++ A
Sbjct: 948 FATEHGVCQHCGVDAQELFLRMRDAP-KSHRKSLLNAA 984
Score = 74 (31.1 bits), Expect = 5.6e-67, Sum P(4) = 5.6e-67
Identities = 46/170 (27%), Positives = 81/170 (47%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDE-ITAKM 732
G ++L+ ++K D ED + + SDQ + + PE EA ++ N+ +E +
Sbjct: 649 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEAE--QSANSKEEALEGGG 703
Query: 733 NDKLLEE---SKTDHSPT--ETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE 787
D+L + + ++S T + S+ T RIHLY+ D +P +F P +
Sbjct: 704 EDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT----KDGKPMNC--NFIPLD 757
Query: 788 --LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 758 IKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQL 803
Score = 43 (20.2 bits), Expect = 5.4e-43, Sum P(4) = 5.4e-43
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH-WQNLNKSLRCVSSATNGKYD 667
LP P + + + G ++FCA TD H + K + C + K D
Sbjct: 707 LPSQPEI-----GQLNNSGTLPVRETFMFCASRNTDRIHLYTKDGKPMNCNFIPLDIKLD 761
Query: 668 ALQEI 672
+++
Sbjct: 762 LWEDL 766
Score = 39 (18.8 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 699 ASSDQFQELMKVPES 713
AS +++Q+LM+ P S
Sbjct: 287 ASFEEWQKLMRAPNS 301
Score = 37 (18.1 bits), Expect = 3.4e-46, Sum P(4) = 3.4e-46
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
K + V +D K AT+D T +D++ RL +S ++
Sbjct: 545 KEKITVASDPRKMATSDST---ADKNGCEPEAKRLKSLSTED 583
>UNIPROTKB|Q5FWF4 [details] [associations]
symbol:ZRANB3 "DNA annealing helicase and endonuclease
ZRANB3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0036292 "DNA rewinding"
evidence=IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IDA]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0070530
"K63-linked polyubiquitin binding" evidence=IDA] [GO:0004520
"endodeoxyribonuclease activity" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009411 "response to UV" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IDA] [GO:0048478 "replication fork
protection" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0009411 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0043596 EMBL:CH471058 GO:GO:0004386
InterPro:IPR003615 SMART:SM00507 GO:GO:0004520 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0045910 GO:GO:0031297 GO:GO:0048478
GO:GO:0070530 CTD:84083 GO:GO:0036292 EMBL:AL136824 EMBL:AK095362
EMBL:AK131303 EMBL:AK304601 EMBL:BX647838 EMBL:AC012450
EMBL:AC016742 EMBL:AC017031 EMBL:AC020602 EMBL:AC064850
EMBL:BC064616 EMBL:BC089429 IPI:IPI00030279 IPI:IPI00796701
IPI:IPI00926904 RefSeq:NP_115519.2 UniGene:Hs.658422
ProteinModelPortal:Q5FWF4 SMR:Q5FWF4 PhosphoSite:Q5FWF4
DMDM:74741477 PRIDE:Q5FWF4 DNASU:84083 Ensembl:ENST00000264159
Ensembl:ENST00000401392 Ensembl:ENST00000412849
Ensembl:ENST00000452187 GeneID:84083 KEGG:hsa:84083 UCSC:uc002tuk.3
UCSC:uc002tul.3 GeneCards:GC02M135894 HGNC:HGNC:25249 HPA:HPA043073
HPA:HPA043301 neXtProt:NX_Q5FWF4 PharmGKB:PA134871612
HOGENOM:HOG000031233 HOVERGEN:HBG062387 InParanoid:Q5FWF4
OMA:ACTEAVI ChiTaRS:ZRANB3 GenomeRNAi:84083 NextBio:73311
ArrayExpress:Q5FWF4 Bgee:Q5FWF4 CleanEx:HS_ZRANB3
Genevestigator:Q5FWF4 Uniprot:Q5FWF4
Length = 1079
Score = 386 (140.9 bits), Expect = 2.9e-66, Sum P(4) = 2.9e-66
Identities = 93/252 (36%), Positives = 140/252 (55%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNAT----RSRILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q +G L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQ 433
MIRRLK +L Q
Sbjct: 253 MIRRLKTEVLTQ 264
Score = 237 (88.5 bits), Expect = 2.9e-66, Sum P(4) = 2.9e-66
Identities = 54/147 (36%), Positives = 76/147 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ + +
Sbjct: 338 SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSI 397
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 398 QAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 457
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEG 676
LN+ + S NG+ + +Q A EG
Sbjct: 458 MLNRKAQVTGSTLNGRKEKIQ--AEEG 482
Score = 169 (64.5 bits), Expect = 2.9e-66, Sum P(4) = 2.9e-66
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
Score = 65 (27.9 bits), Expect = 2.9e-66, Sum P(4) = 2.9e-66
Identities = 35/166 (21%), Positives = 75/166 (45%)
Query: 674 VEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRA----INTNDEIT 729
++ +++++ ++ D +D + SD ++ + E + +D + I D +T
Sbjct: 655 IDSLNHIQDKNEKDDSQKDTSKKVQTISDCEKQALAQSEPGQLADSKEETPKIEKEDGLT 714
Query: 730 AKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE-- 787
++ ++ + S T P D S+ T RIH+Y+ D + +F P +
Sbjct: 715 SQPGNEQWKSSDT--LPVY-DTLMFCASRNTDRIHIYT----KDGKQMSC--NFIPLDIK 765
Query: 788 LDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
LD E + + YR I F+ EW++L +++ +++ K QL
Sbjct: 766 LDLWEDLPASFQLKQ-YRSLILRFVREWSSLTAMKQ-RIIRKSGQL 809
Score = 39 (18.8 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 636 IFCAKDTTDESH-WQNLNKSLRCVSSATNGKYDALQEI 672
+FCA TD H + K + C + K D +++
Sbjct: 735 MFCASRNTDRIHIYTKDGKQMSCNFIPLDIKLDLWEDL 772
Score = 37 (18.1 bits), Expect = 1.5e-52, Sum P(4) = 1.5e-52
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 901 NDEPLCKLCQKTCKSKNAK 919
N + LC +C K ++ AK
Sbjct: 1036 NLQTLCTVCHKERTARQAK 1054
>UNIPROTKB|E2RK04 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0005622 GO:GO:0004386
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00630000089754
OMA:ACTEAVI EMBL:AAEX03011911 EMBL:AAEX03011910
Ensembl:ENSCAFT00000008142 Uniprot:E2RK04
Length = 1069
Score = 376 (137.4 bits), Expect = 1.8e-65, Sum P(4) = 1.8e-65
Identities = 91/246 (36%), Positives = 138/246 (56%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIA+A + +L+V P+
Sbjct: 30 LPDKLRAKLLPFQKDGIAFALRRDGRCMVADEMGLGKTIQAIAVAYFYKEEWPLLIVVPS 89
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P DI+++ V +V ++ Y +L +++I+
Sbjct: 90 SLRYPWTEEIEKWIPELGPEDINVI--QNKTDVGRISTSKVTILGYGLLTTDAETLIDVL 147
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T R +LL+GTP+L RP ++F QI
Sbjct: 148 NNQNFKVVIVDESHYMKSRNAT----RSKILLPIVQKAKRAILLTGTPALGRPEELFMQI 203
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ + G+ Q +G L EL+ LL +MIRRLK
Sbjct: 204 EALFPQKFGTWT-EYAKRYCNAHI--RFFGRRPQWDCRGASNLNELHQLLSD-IMIRRLK 259
Query: 428 QHLLVQ 433
+L Q
Sbjct: 260 NDVLTQ 265
Score = 234 (87.4 bits), Expect = 1.8e-65, Sum P(4) = 1.8e-65
Identities = 55/147 (37%), Positives = 75/147 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ + +
Sbjct: 339 SLKFLVFAHHLSMLQACTEAVIESKTRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSI 398
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 399 QAAGQGLTFTAATYVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLVANGTLDTLMWG 458
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEG 676
LN+ + S NG+ + LQ A EG
Sbjct: 459 MLNRKTQVTGSTLNGRKEQLQ--AEEG 483
Score = 160 (61.4 bits), Expect = 1.8e-65, Sum P(4) = 1.8e-65
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K ++ FC++ C EE+ +R++ +LR ++
Sbjct: 888 KGYLQAVDNEGNPLCLRCQQPTCQTKQECKVNAWDSRFCSVKCQEEFWIRSNNNYLRAKV 947
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C ++ +L ++ QR+ +
Sbjct: 948 FEIEHGVCQLCNVNAQELFLCLRDAPKSQRKNLL 981
Score = 80 (33.2 bits), Expect = 1.8e-65, Sum P(4) = 1.8e-65
Identities = 42/154 (27%), Positives = 74/154 (48%)
Query: 684 DKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRA----INTNDEITAKMNDKLLEE 739
+K D +D + + +SSD ++++ PE + ++ + I D +T + +D+ L+
Sbjct: 655 NKKDDPQKDTSKNIWSSSDCEKQVLASPEPNPLAESKEEISEIKREDGLTPQPSDEQLKS 714
Query: 740 SKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC 797
S D+ P D SQ T RIHLY+ G +F P + LD E +
Sbjct: 715 S--DNLPVY-DTLMFCASQNTDRIHLYT-KEGNQMNC-----NFIPLDIKLDLWEDLPAS 765
Query: 798 --LKENPGYRHAIQAFINEWNALRPIERTKLLGK 829
LK+N R I F+ EW++L +++ K++ K
Sbjct: 766 FQLKQN---RSLILRFVREWSSLTAMKQ-KIIRK 795
Score = 42 (19.8 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 14/67 (20%), Positives = 25/67 (37%)
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAV-NIYIFCAKDTTDESH-WQNLNKSLRCVSSATNGK 665
E+ + L Q D + V + +FCA TD H + + C + K
Sbjct: 696 EIKREDGLTPQPSDEQLKSSDNLPVYDTLMFCASQNTDRIHLYTKEGNQMNCNFIPLDIK 755
Query: 666 YDALQEI 672
D +++
Sbjct: 756 LDLWEDL 762
Score = 37 (18.1 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 901 NDEPLCKLCQKTCKSKNAK 919
N + LC LC + ++ AK
Sbjct: 1026 NLQTLCTLCHRERTARQAK 1044
>UNIPROTKB|E1BSZ6 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0036292 "DNA rewinding" evidence=IEA] [GO:0036310
"annealing helicase activity" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0048478 "replication fork
protection" evidence=IEA] [GO:0070530 "K63-linked polyubiquitin
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194
SMART:SM00490 SMART:SM00547 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0005622 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 OMA:ACTEAVI
EMBL:AADN02016954 IPI:IPI00573139 Ensembl:ENSGALT00000019959
ArrayExpress:E1BSZ6 Uniprot:E1BSZ6
Length = 1086
Score = 388 (141.6 bits), Expect = 7.6e-65, Sum P(3) = 7.6e-65
Identities = 92/255 (36%), Positives = 152/255 (59%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E VD + LP+ L +LPFQ +G+ F L+R GRC+IADEMGLGKT+QAIAI+ +
Sbjct: 14 ENVDAELSFLPERLRKKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYYYRRE 73
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+L+V P+ LR W +ELE+W+P P DI ++ ++ + ++ +V+V+ Y +L
Sbjct: 74 WPLLIVVPSSLRYPWVDELEKWIPELSPDDI-IIIQNKTDTGRIST-SKVIVLGYGLLTS 131
Query: 304 LRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
+++++ Q++ ++++DESH+++ S+ R +LL+GTP+L
Sbjct: 132 DAQTLVDTLYRQNFKVVVIDESHYMK-SRNAMRSN---ILLPIVQKATRAILLTGTPALG 187
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLK 418
RP ++F QI L+P G ++AK YCD + + G+ Q +G L+EL+ LL+
Sbjct: 188 RPEELFMQIEALFPRRFGTWS-EYAKKYCDARL--RFFGKRKQWDCRGASNLKELHQLLR 244
Query: 419 QTVMIRRLKQHLLVQ 433
+ +MIRRLK +L Q
Sbjct: 245 E-IMIRRLKNDVLTQ 258
Score = 257 (95.5 bits), Expect = 7.6e-65, Sum P(3) = 7.6e-65
Identities = 75/260 (28%), Positives = 122/260 (46%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH+ +L E + E + ++RIDG+ +R V+ FQ + +
Sbjct: 338 KFLVFAHHISMLQACTEAVIENKVRYIRIDGSVPSAERIRLVNQFQKDPDTRVAILSIQA 397
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L F++A ++VF EL P + QAEDRAHR GQ S+VNI+ AK T D W L
Sbjct: 398 AGQGLTFTAATHIVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDPLMWAML 457
Query: 652 NKSLRCVSSATNGKYDALQ--EIAVEGVSYLEMSDK-TDRGS-EDLTLDQVASSDQFQEL 707
N+ + S NGK + +Q E E +L ++ T S EDL + + + + +
Sbjct: 458 NRKAKVTGSTLNGKKEKMQAEEGDKEKWDFLSFAEAWTPNDSVEDLQNEFLFTHFEKERQ 517
Query: 708 MKV-----PESSEASDFRAIN--TNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYT 760
+ P+SS + ++ T +E + K ++ L T S +T H N +
Sbjct: 518 HDIRSFFSPKSSAGKKHKMLSDTTKEENSEKSSESL---DSTGISDVDTICHENTCEREA 574
Query: 761 GRIHLYS-CVPGTDSRPRPL 779
R S +P + S+ + L
Sbjct: 575 KRARSISGSIPVSSSKKKTL 594
Score = 154 (59.3 bits), Expect = 7.6e-65, Sum P(3) = 7.6e-65
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 864 PSLEISHPLPSGAEWKKVRICSGSRKKEKEYT-QGWTINDEPLCKLCQK-TCKSKNAKNA 921
PSL + LPS +W +V S K Y Q PLC CQ+ T + + A
Sbjct: 885 PSLSV---LPS--DWTEVE----SSSLPKGYLLQALDGEGNPLCLHCQQPTAQLDQSCQA 935
Query: 922 EYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRR 981
++ FC+L C E++ +R+S +LR ++F IEHGVC C + +L +++ QR+
Sbjct: 936 HAWDTRFCSLACQEDFSVRSSQSYLRVKVFEIEHGVCQFCHQNAQELYLNVRDAPKSQRK 995
Query: 982 KYI 984
K +
Sbjct: 996 KLL 998
Score = 83 (34.3 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 55/212 (25%), Positives = 88/212 (41%)
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
+A+N C+ T + W + C S N + + E+ ++S + R
Sbjct: 621 TAINEDWHCSVCTYSNNKWLPYCEMCNCPQS-NNAERNC--EVPTSQTEE-DVSKDSRRD 676
Query: 690 SEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKT-DHSPTE 748
+ D + +E V + SE S+ A+ +I +K N++ E D S
Sbjct: 677 EQKAAWDAEDEREDLEE--SVTQQSEISEQEAV----KIKSKENERTCGEVDILDESDAF 730
Query: 749 T--DDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGY 804
D S+ T RIHLY+ D P L +F P + LDN E L EN +
Sbjct: 731 LVYDGLMFCASRNTDRIHLYT----KDGEPLNL--NFIPLDIQLDNWED----LPENFQH 780
Query: 805 RH---AIQAFINEWNALRPIERTKLLGKPLQL 833
+H I F+ EWN L +++ K++ K QL
Sbjct: 781 KHNRSMILRFVKEWNQLTAMKQ-KMVRKSGQL 811
Score = 37 (18.1 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 901 NDEPLCKLCQKTCKSKNAK 919
N + LC +C + +K AK
Sbjct: 1043 NLQTLCTVCHRERTAKQAK 1061
>UNIPROTKB|E1BB03 [details] [associations]
symbol:ZRANB3 "DNA annealing helicase and endonuclease
ZRANB3" species:9913 "Bos taurus" [GO:0048478 "replication fork
protection" evidence=ISS] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISS] [GO:0036292 "DNA rewinding"
evidence=ISS] [GO:0031297 "replication fork processing"
evidence=ISS] [GO:0009411 "response to UV" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0043596 "nuclear
replication fork" evidence=ISS] [GO:0070530 "K63-linked
polyubiquitin binding" evidence=ISS] [GO:0036310 "annealing
helicase activity" evidence=ISS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0009411 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0043596 GO:GO:0004386 InterPro:IPR003615
SMART:SM00507 GO:GO:0004520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0045910 GO:GO:0031297
GO:GO:0048478 GO:GO:0070530 EMBL:DAAA02005001 EMBL:DAAA02005002
IPI:IPI00698723 RefSeq:XP_002685457.1 RefSeq:XP_003581888.1
GeneID:529922 KEGG:bta:529922 CTD:84083 GO:GO:0036292
Uniprot:E1BB03
Length = 1074
Score = 378 (138.1 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 92/246 (37%), Positives = 137/246 (55%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAI IA + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGITFALRRDGRCMVADEMGLGKTVQAIGIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P +I+++ V +V V+ Y +L +++I+
Sbjct: 89 SLRYPWTEEIEKWIPELSPEEINVI--QNKTDVGRISTSKVTVLGYGLLTTDAETLIDAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T R +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFKVVIVDESHYMKSRSAT----RSRILLPIVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q +G L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-EYAKRYCNAHV--RYFGRRSQWDCRGASNLNELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQ 433
+L Q
Sbjct: 259 TEVLTQ 264
Score = 240 (89.5 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 56/147 (38%), Positives = 76/147 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ E +
Sbjct: 338 SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSI 397
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 398 QAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 457
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEG 676
LN+ + S NG+ + LQ A EG
Sbjct: 458 MLNRKAQVTGSTLNGRKEKLQ--AEEG 482
Score = 179 (68.1 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K + A+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 893 KGYLQAVDNEGNPLCLRCQQPTCQTKQERKADAWDSRFCSLKCQEEFWIRSNNSYLRAKV 952
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 953 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKSLL 986
Score = 63 (27.2 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 56/235 (23%), Positives = 101/235 (42%)
Query: 620 EDRAHRRGQTSAVNIYIFC---AKDTTDE---SHWQ-----NLNKS-LRCVSSATNGKYD 667
E++ R GQ A+ + C A+ TT WQ +N S L N +
Sbjct: 588 EEQPCRPGQAEALLTFGICKAKAQATTPAFCGEGWQCAFCTYINNSVLPYCEMCENPRGG 647
Query: 668 ALQEIAVEGVSYLEMSDKTDRG-SEDLTLDQVASSDQFQELM--KVPE--SSEASDFRAI 722
A+ +I + ++ + +K ++ S+D + SSD ++++ PE + +
Sbjct: 648 AVPQI--DSLNQTQNKNKNEKDDSQDTSKKIQTSSDGEKQVLAHSTPEPLAKSKEEISTT 705
Query: 723 NTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFES 782
+ D +T + D+ L+ + P D S+ T RIH+Y+ D +
Sbjct: 706 ESEDRLTPQPGDEQLK-----NWPVY-DTLMFCASKNTDRIHVYT----KDGNQMNC--N 753
Query: 783 FRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
F P + LD E + LK+N R I F+ EW++L +++ K++ K QL
Sbjct: 754 FIPLDIKLDLWEDLPASFQLKQN---RSLILRFVREWSSLTAMKQ-KIIKKSGQL 804
>UNIPROTKB|E1BSZ4 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194
SMART:SM00490 SMART:SM00547 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0005622 GO:GO:0004386 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 EMBL:AADN02016954
IPI:IPI00599003 Ensembl:ENSGALT00000019961 ArrayExpress:E1BSZ4
Uniprot:E1BSZ4
Length = 1078
Score = 388 (141.6 bits), Expect = 2.4e-64, Sum P(3) = 2.4e-64
Identities = 92/255 (36%), Positives = 152/255 (59%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E VD + LP+ L +LPFQ +G+ F L+R GRC+IADEMGLGKT+QAIAI+ +
Sbjct: 14 ENVDAELSFLPERLRKKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYYYRRE 73
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+L+V P+ LR W +ELE+W+P P DI ++ ++ + ++ +V+V+ Y +L
Sbjct: 74 WPLLIVVPSSLRYPWVDELEKWIPELSPDDI-IIIQNKTDTGRIST-SKVIVLGYGLLTS 131
Query: 304 LRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
+++++ Q++ ++++DESH+++ S+ R +LL+GTP+L
Sbjct: 132 DAQTLVDTLYRQNFKVVVIDESHYMK-SRNAMRSN---ILLPIVQKATRAILLTGTPALG 187
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLK 418
RP ++F QI L+P G ++AK YCD + + G+ Q +G L+EL+ LL+
Sbjct: 188 RPEELFMQIEALFPRRFGTWS-EYAKKYCDARL--RFFGKRKQWDCRGASNLKELHQLLR 244
Query: 419 QTVMIRRLKQHLLVQ 433
+ +MIRRLK +L Q
Sbjct: 245 E-IMIRRLKNDVLTQ 258
Score = 257 (95.5 bits), Expect = 2.4e-64, Sum P(3) = 2.4e-64
Identities = 75/260 (28%), Positives = 122/260 (46%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH+ +L E + E + ++RIDG+ +R V+ FQ + +
Sbjct: 338 KFLVFAHHISMLQACTEAVIENKVRYIRIDGSVPSAERIRLVNQFQKDPDTRVAILSIQA 397
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L F++A ++VF EL P + QAEDRAHR GQ S+VNI+ AK T D W L
Sbjct: 398 AGQGLTFTAATHIVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDPLMWAML 457
Query: 652 NKSLRCVSSATNGKYDALQ--EIAVEGVSYLEMSDK-TDRGS-EDLTLDQVASSDQFQEL 707
N+ + S NGK + +Q E E +L ++ T S EDL + + + + +
Sbjct: 458 NRKAKVTGSTLNGKKEKMQAEEGDKEKWDFLSFAEAWTPNDSVEDLQNEFLFTHFEKERQ 517
Query: 708 MKV-----PESSEASDFRAIN--TNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYT 760
+ P+SS + ++ T +E + K ++ L T S +T H N +
Sbjct: 518 HDIRSFFSPKSSAGKKHKMLSDTTKEENSEKSSESL---DSTGISDVDTICHENTCEREA 574
Query: 761 GRIHLYS-CVPGTDSRPRPL 779
R S +P + S+ + L
Sbjct: 575 KRARSISGSIPVSSSKKKTL 594
Score = 149 (57.5 bits), Expect = 2.4e-64, Sum P(3) = 2.4e-64
Identities = 37/115 (32%), Positives = 59/115 (51%)
Query: 872 LPSGAEWKKVRICSGSRKKEKEYT-QGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFC 929
LPS +W +V S K Y Q PLC CQ+ T + + A ++ FC
Sbjct: 882 LPS--DWTEVE----SSSLPKGYLLQALDGEGNPLCLHCQQPTAQLDQSCQAHAWDTRFC 935
Query: 930 NLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+L C E++ +R+S +LR ++F IEHGVC C + +L +++ QR+K +
Sbjct: 936 SLACQEDFSVRSSQSYLRVKVFEIEHGVCQFCHQNAQELYLNVRDAPKSQRKKLL 990
Score = 97 (39.2 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 56/215 (26%), Positives = 93/215 (43%)
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
+A+N C+ T + W + C S NG + Q+ V+ ++S + R
Sbjct: 621 TAINEDWHCSVCTYSNNKWLPYCEMCNCPQS-NNG--NLFQQFG--NVTEEDVSKDSRRD 675
Query: 690 SEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTET 749
+ D + +E V + SE S+ A+ +I +K N++ E E+
Sbjct: 676 EQKAAWDAEDEREDLEE--SVTQQSEISEQEAV----KIKSKENERTCGEGNRHTKSDES 729
Query: 750 DDH--HNNV----SQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKEN 801
D ++ + S+ T RIHLY+ D P L +F P + LDN E L EN
Sbjct: 730 DAFLVYDGLMFCASRNTDRIHLYT----KDGEPLNL--NFIPLDIQLDNWED----LPEN 779
Query: 802 PGYRH---AIQAFINEWNALRPIERTKLLGKPLQL 833
++H I F+ EWN L +++ K++ K QL
Sbjct: 780 FQHKHNRSMILRFVKEWNQLTAMKQ-KMVRKSGQL 813
Score = 37 (18.1 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 901 NDEPLCKLCQKTCKSKNAK 919
N + LC +C + +K AK
Sbjct: 1035 NLQTLCTVCHRERTAKQAK 1053
>UNIPROTKB|F5GYN7 [details] [associations]
symbol:ZRANB3 "Endonuclease ZRANB3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0005622 GO:GO:0004386
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC012450 EMBL:AC016742
EMBL:AC017031 EMBL:AC020602 EMBL:AC064850 HGNC:HGNC:25249
ChiTaRS:ZRANB3 IPI:IPI01013366 ProteinModelPortal:F5GYN7 SMR:F5GYN7
Ensembl:ENST00000536680 ArrayExpress:F5GYN7 Bgee:F5GYN7
Uniprot:F5GYN7
Length = 1077
Score = 355 (130.0 bits), Expect = 2.5e-62, Sum P(4) = 2.5e-62
Identities = 89/252 (35%), Positives = 136/252 (53%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R G + D+MGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGSRIDCDQMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNAT----RSRILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q +G L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQ 433
MIRRLK +L Q
Sbjct: 253 MIRRLKTEVLTQ 264
Score = 237 (88.5 bits), Expect = 2.5e-62, Sum P(4) = 2.5e-62
Identities = 54/147 (36%), Positives = 76/147 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ + +
Sbjct: 338 SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSI 397
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 398 QAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 457
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEG 676
LN+ + S NG+ + +Q A EG
Sbjct: 458 MLNRKAQVTGSTLNGRKEKIQ--AEEG 482
Score = 169 (64.5 bits), Expect = 2.5e-62, Sum P(4) = 2.5e-62
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 896 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 955
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 956 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 989
Score = 61 (26.5 bits), Expect = 2.5e-62, Sum P(4) = 2.5e-62
Identities = 32/162 (19%), Positives = 70/162 (43%)
Query: 674 VEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMN 733
++ +++++ ++ D +D + SD ++ + E + +D + E +
Sbjct: 655 IDSLNHIQDKNEKDDSQKDTSKKVQTISDCEKQALAQSEPGQLADSKEETPKIEKEDGLT 714
Query: 734 DKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNT 791
+ + +D P D S+ T RIH+Y+ D + +F P + LD
Sbjct: 715 SQPEQWKSSDTLPVY-DTLMFCASRNTDRIHIYT----KDGKQMSC--NFIPLDIKLDLW 767
Query: 792 EHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
E + + YR I F+ EW++L +++ +++ K QL
Sbjct: 768 EDLPASFQLKQ-YRSLILRFVREWSSLTAMKQ-RIIRKSGQL 807
Score = 39 (18.8 bits), Expect = 5.5e-40, Sum P(3) = 5.5e-40
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 636 IFCAKDTTDESH-WQNLNKSLRCVSSATNGKYDALQEI 672
+FCA TD H + K + C + K D +++
Sbjct: 733 MFCASRNTDRIHIYTKDGKQMSCNFIPLDIKLDLWEDL 770
Score = 37 (18.1 bits), Expect = 1.3e-48, Sum P(4) = 1.3e-48
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 901 NDEPLCKLCQKTCKSKNAK 919
N + LC +C K ++ AK
Sbjct: 1034 NLQTLCTVCHKERTARQAK 1052
>ZFIN|ZDB-GENE-060712-1 [details] [associations]
symbol:zranb3 "zinc finger, RAN-binding domain
containing 3" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060712-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 HOVERGEN:HBG054110
EMBL:BC078216 IPI:IPI00496409 UniGene:Dr.132615
HOGENOM:HOG000147805 InParanoid:Q6DC67 Uniprot:Q6DC67
Length = 541
Score = 388 (141.6 bits), Expect = 3.3e-56, Sum P(2) = 3.3e-56
Identities = 97/261 (37%), Positives = 152/261 (58%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
PE +S D + LP+ L + ++PFQ EGV F L R GRC+IADEMGLGKT+QAI++A
Sbjct: 12 PEEVSLNGKDAL-QLLPQKLREKLMPFQREGVCFALSRNGRCMIADEMGLGKTIQAISVA 70
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
F +L+V P+ L+ W EELE+W+P P DI+LV + + + ++ +V ++
Sbjct: 71 YIFKQEWPLLIVVPSSLKYPWIEELEKWIPELDPRDINLVES-KTDTMSIST-SKVTILG 128
Query: 298 YTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLS 353
Y +L ++++E Q +A+++VDESH+++ S+ + + R +LL+
Sbjct: 129 YGLLTTDARALLEALNKQRFAVVLVDESHYLK-SRNAARSK---ILVPIIQSAKRAILLT 184
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEE 412
GTP+L RP ++F QI+ L+P G D+A YC+ Y G Q +G L+E
Sbjct: 185 GTPALGRPEELFMQIDALYPRRFGTWS-DYANKYCNAH--YRYFGARRQWDCRGASHLDE 241
Query: 413 LNVLLKQTVMIRRLKQHLLVQ 433
L+ L + +MIRRLK +L Q
Sbjct: 242 LHKRLSE-IMIRRLKNQVLTQ 261
Score = 251 (93.4 bits), Expect = 3.3e-56, Sum P(2) = 3.3e-56
Identities = 57/145 (39%), Positives = 78/145 (53%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHHL +L E + E G++RIDG+ +R VH FQ + +
Sbjct: 337 KFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQLVHRFQNDPDTRVAVLSIQA 396
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L F++A +VVF EL +P + QAEDRAHR GQT+ V+I+ AK T D W L
Sbjct: 397 AGQGLTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTATVHIHYLIAKGTFDTVMWAML 456
Query: 652 NKSLRCVSSATNGKYDALQEIAVEG 676
N+ SA NGK + L+ A EG
Sbjct: 457 NRKETVTGSALNGKKEYLK--AEEG 479
>UNIPROTKB|Q0P4U8 [details] [associations]
symbol:smarcal1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0036310 "annealing helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 Pfam:PF07443
PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 HOGENOM:HOG000018734
HOVERGEN:HBG054110 KO:K14440 EMBL:BC121897 RefSeq:NP_001072923.1
UniGene:Str.47258 ProteinModelPortal:Q0P4U8 STRING:Q0P4U8
Ensembl:ENSXETT00000000989 GeneID:780385 KEGG:xtr:780385
Xenbase:XB-GENE-493391 OMA:ARCKAAM Bgee:Q0P4U8 Uniprot:Q0P4U8
Length = 942
Score = 385 (140.6 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 100/306 (32%), Positives = 168/306 (54%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ ++N +EVE +P L + + G+ R E + + + ++
Sbjct: 378 FMLEDYQKLMESVRNIQQVEVEPLPRPVLQ-----AFAPQFGKTTIIR-EEIPEVDLSQV 431
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
KL +L+ PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 432 DSKLGSNLM----PFQRDGVNFAVSREGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVV 487
Query: 250 CPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
P+ +R +WAE +RWLP P ++ +V G + L + ++S+ +L ++ K
Sbjct: 488 APSSVRFTWAEAFQRWLPSIRPESVNVIVTGRDSQSASL-----INIVSFDLLGKMDKQ- 541
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
I + ++I+DESH ++ + +T+ + R++LLSGTP++SRP +++ QI
Sbjct: 542 IAATFQVIIIDESHFLK-NVKTARCK---AAMPLLKSAKRVMLLSGTPAMSRPAELYTQI 597
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + +DF YCD K + G+ D+S L EL +LL++++MIRRLK
Sbjct: 598 AAVRPSFFPRF-HDFGIRYCDAKQMPWGW------DYSGSSNLNELKLLLEESIMIRRLK 650
Query: 428 QHLLVQ 433
+L Q
Sbjct: 651 SEVLSQ 656
Score = 267 (99.0 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 59/154 (38%), Positives = 82/154 (53%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + E + +K + ++RIDGNT DRQS H FQ+S +
Sbjct: 730 KFLVFAHHKLVLDHICEELGKKDVPYIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITA 789
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L SSA VVF EL +P +++QAEDR HR GQTS+VNI+ AK T D+ W +
Sbjct: 790 ANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMI 849
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685
+ ++ + A G +A E Y K
Sbjct: 850 QEKIKVLGQA--GLSEANFSETTESTDYFYKDPK 881
>UNIPROTKB|Q498E7 [details] [associations]
symbol:smarcal1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:8355 "Xenopus laevis" [GO:0000733 "DNA strand renaturation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006259 "DNA
metabolic process" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0036310 "annealing helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 CTD:50485 HOVERGEN:HBG054110 KO:K14440 EMBL:BC100245
RefSeq:NP_001089668.1 UniGene:Xl.6594 ProteinModelPortal:Q498E7
GeneID:734728 KEGG:xla:734728 Xenbase:XB-GENE-866253 Uniprot:Q498E7
Length = 960
Score = 382 (139.5 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 99/306 (32%), Positives = 169/306 (55%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ ++N +EVE +P V++ + + + L+ E+ D
Sbjct: 396 FMLEDYQKLMESVRNIQQVEVEPLP---RPVLQAFAPQFEKTTIS------LA-EIEDVD 445
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L+ ++PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 446 LSHVDSKLIGNLMPFQRDGVNFAISREGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVV 505
Query: 250 CPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
P+ +R +WAE RWLP P ++ +V G + +L + +IS+ +L ++ K
Sbjct: 506 APSSVRFTWAEAFHRWLPSLNPESVNVIVTGRDSQSANL-----INIISFDLLGKMDKQ- 559
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
I ++ ++I+DESH ++ + +T+ + R++LLSGTP++SRP +++ QI
Sbjct: 560 IAANFKVIIIDESHFLK-NVKTARCK---AAMPLLKSAKRVMLLSGTPAMSRPAELYTQI 615
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + +DF YCD K + G+ D+S L EL +LL++++MIRRLK
Sbjct: 616 AAVRPTFFPRF-HDFGIRYCDAKQMPWGW------DYSGSSNLNELKLLLEESIMIRRLK 668
Query: 428 QHLLVQ 433
+L Q
Sbjct: 669 SEVLSQ 674
Score = 266 (98.7 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
Identities = 59/154 (38%), Positives = 81/154 (52%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + E + +K + ++RIDGNT DRQS H FQ S +
Sbjct: 748 KFLVFAHHKLVLDNICEELGKKEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITA 807
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L SSA VVF EL +P +++QAEDR HR GQTS+VNI+ AK T D+ W +
Sbjct: 808 ANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMI 867
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685
+ ++ + A G +A E Y K
Sbjct: 868 QEKIKVLGQA--GLSEANFSETTESTDYFYKDPK 899
>UNIPROTKB|F1P0X4 [details] [associations]
symbol:SMARCAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 OMA:FKQQNLS EMBL:AADN02016814
IPI:IPI00581881 Ensembl:ENSGALT00000018709 Uniprot:F1P0X4
Length = 704
Score = 385 (140.6 bits), Expect = 7.9e-54, Sum P(2) = 7.9e-54
Identities = 100/305 (32%), Positives = 164/305 (53%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ ++ +EVE +P V++ + I + + VVD
Sbjct: 137 FLLEDYPKLMKVFQSLVSVEVEPLPGT---VIQAFAAQIQSSTSQKMDFPDVDLSVVDS- 192
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
K+ SL+ PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 193 --KIVTSLM----PFQREGVNFAILKNGRLLLADDMGLGKTVQAICIAAYYQKEWPLLVV 246
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P +++ +++ LT + +IS+ +L ++ K +
Sbjct: 247 TPSSVRFTWAEAFHRWLPSLRPGSTNVIVTSKDS---LTA-SLINIISFDLLSKMDKQL- 301
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH+++ K R++LLSGTP++SRP +++ QI
Sbjct: 302 KSTFQVVIIDESHYLKNIKTA----RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQIA 357
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ PG + + FA YCD K + G+ D+S L EL +LL++++MIRRLK
Sbjct: 358 AVQPGFFPQF-HTFALRYCDAKKMPWGW------DYSGSSNLAELKILLEESIMIRRLKS 410
Query: 429 HLLVQ 433
+L Q
Sbjct: 411 DVLSQ 415
Score = 252 (93.8 bits), Expect = 7.9e-54, Sum P(2) = 7.9e-54
Identities = 50/131 (38%), Positives = 75/131 (57%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
NK ++FAHH VLD + E + +K ++RIDG+T +RQS FQ S +
Sbjct: 488 NKFLVFAHHKVVLDAIVEELEKKRFDYIRIDGSTSSAERQSLCQKFQFSEKQAVAVLSLT 547
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
L S+A VVF EL +P +++QAEDRAHR GQTS+VN++ A+ T D+ W
Sbjct: 548 AANMGLTLSAADLVVFAELFWNPGVLIQAEDRAHRIGQTSSVNVHYLVARGTADDFLWPM 607
Query: 651 LNKSLRCVSSA 661
+ + ++ + A
Sbjct: 608 IQEKIKVLGEA 618
Score = 38 (18.4 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 873 PSGAEWK-KVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDL 927
P G K K + + ++K K Y + E L +T ++K EY DL
Sbjct: 428 PEGINAKTKAMLAAEAKKMAKGY-ESKQQEKEALLLFYNRTAEAKIHSVIEYILDL 482
>UNIPROTKB|F1S0D5 [details] [associations]
symbol:ZRANB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070530 "K63-linked polyubiquitin binding"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0036292 "DNA rewinding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0009411 "response
to UV" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004520 "endodeoxyribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001876
InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271 Pfam:PF01844
PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51194 SMART:SM00490
SMART:SM00547 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0005622 GO:GO:0004386 GO:GO:0004519 InterPro:IPR003615
SMART:SM00507 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00630000089754 OMA:ACTEAVI EMBL:CU466471
EMBL:CU570637 Ensembl:ENSSSCT00000017094 Uniprot:F1S0D5
Length = 1021
Score = 275 (101.9 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 74/214 (34%), Positives = 116/214 (54%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAI IA + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MGLGKTIQAIGIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELGPEEINVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXX 340
+ +V V+ Y +L +++I+ Q++ ++IVDESH+++ S+ T
Sbjct: 59 IGEISTSKVTVLGYGLLTTDAETLIDALNNQNFQVVIVDESHYLK-SRNT----RSRILL 113
Query: 341 XXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
R +LL+GTP+L RP ++F QI L+P G D+A+ YC+ Y G+
Sbjct: 114 PVVQKAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWT-DYARRYCNAHV--RYFGKR 170
Query: 401 FQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQ 433
Q +G L EL+ LL +MIRRLK +L Q
Sbjct: 171 PQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQ 203
Score = 244 (91.0 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 72/242 (29%), Positives = 109/242 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E +VRIDG+ +R V+ FQ E +
Sbjct: 277 SLKFLVFAHHLSMLQACTEAVIESKTRYVRIDGSVPSSERIHLVNQFQKDPETRVAILSI 336
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 337 QAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWA 396
Query: 650 NLNKSLRCVSSATNGKYDALQ--EIAVEGVSYLEMSD--KTDRGSEDLTLDQVASSDQFQ 705
LN+ + S NG+ + LQ E E +L+ ++ D SE L + + + + +
Sbjct: 397 MLNRKAQVTGSTLNGRKEKLQAEEDDKEKWDFLQFAEVWTPDESSEALKNEMLFTHFEKE 456
Query: 706 ELMKVPES-SEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHH-NNVSQYTGRI 763
+ + S R + T DE + + +P HH +N+ R+
Sbjct: 457 KQRDIRSFFSPNPKKRQLVTCDESRVFQEKNTVAPADLRKTPPRDFIHHESNLEPEAKRL 516
Query: 764 HL 765
L
Sbjct: 517 KL 518
Score = 178 (67.7 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 841 KGYLQAVDNEGNPLCLRCQQPTCQTKQEHKANAWDSRFCSLKCQEEFWIRSNNSYLRAKV 900
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ ++
Sbjct: 901 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKNFL 934
Score = 55 (24.4 bits), Expect = 7.1e-34, Sum P(3) = 7.1e-34
Identities = 39/158 (24%), Positives = 66/158 (41%)
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELM-KVPE--SSEASDFRAINTNDEITAKMNDKLLEE 739
++K D + Q S + Q L+ PE + + + T + +D+ L+
Sbjct: 608 NEKDDSQKDTSQKIQTNSDSEKQALVCSEPEPLAENKEQIPKVEGEERFTPQPDDEQLKS 667
Query: 740 SKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC 797
S T P D S+ T RIH+Y+ D +F P + LD E +
Sbjct: 668 SDT--MPVY-DTLMFCASKNTDRIHVYT----KDGNQMNC--NFIPLDIKLDLWEDLPAS 718
Query: 798 --LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
LK+N R I F+ EW+ L +++ +++ K QL
Sbjct: 719 FQLKQN---RSLILRFVREWSCLTAMKQ-RIIRKSGQL 752
Score = 42 (19.8 bits), Expect = 1.6e-32, Sum P(3) = 1.6e-32
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 618 QAEDRAHRRGQTSAV-NIYIFCAKDTTDESH 647
Q +D + T V + +FCA TD H
Sbjct: 659 QPDDEQLKSSDTMPVYDTLMFCASKNTDRIH 689
Score = 38 (18.4 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 901 NDEPLCKLCQKTCKSKNAKNAE 922
N + LC +C K ++ AK +
Sbjct: 979 NLQTLCTVCHKERTARQAKERQ 1000
>ZFIN|ZDB-GENE-041210-303 [details] [associations]
symbol:smarcal1 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily
a-like 1" species:7955 "Danio rerio" [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IMP] [GO:0001525
"angiogenesis" evidence=IMP] [GO:0010172 "embryonic body
morphogenesis" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
[GO:0030097 "hemopoiesis" evidence=IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0036310
"annealing helicase activity" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 Pfam:PF07443
PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
ZFIN:ZDB-GENE-041210-303 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0001525 GO:GO:0016568 GO:GO:0051216
GO:GO:0004386 GO:GO:0030097 GO:GO:0048589 GO:GO:0010172
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0036310 GO:GO:0008094 GO:GO:0022402 CTD:50485
HOGENOM:HOG000018734 HOVERGEN:HBG054110 KO:K14440 EMBL:EU655703
IPI:IPI00896289 RefSeq:NP_001120938.1 UniGene:Dr.105797
GeneID:560412 KEGG:dre:560412 NextBio:20883429 Uniprot:B2ZFP3
Length = 807
Score = 397 (144.8 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 104/306 (33%), Positives = 168/306 (54%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSID-TGRWNPCRPEHLSDEVVDE 188
+ L DY ++ L +E E +P V++ S + T P PE +D +
Sbjct: 278 FLLEDYGKLMADLNELPTVETEPLPHA---VLQSFSSQFEKTQSQAPVPPE--AD--LSH 330
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ +L +SL+ PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA + S +LV
Sbjct: 331 IDPQLTRSLM----PFQRDGVNFAVSREGRLLLADDMGLGKTVQAICIAAYYRSEWPLLV 386
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +WAE RWLP P I++V +++ R + +ISY +L+++ K
Sbjct: 387 VAPSSVRFTWAEAFRRWLPSVKPDSINVVVKGKDS----LRSGLINIISYDLLNKMDKQP 442
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
+ ++I+DESH ++ + +T+ R++LLSGTP++SRP +++ QI
Sbjct: 443 PSSPFNVIIMDESHFLK-NMKTARCR---AALPLLKTAKRVILLSGTPAMSRPAELYTQI 498
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P L + +DF YCD K + G+ D+S L EL +LL++++M+RRLK
Sbjct: 499 QAVRPALFPRF-HDFGTRYCDAKQLPWGW------DYSSSSNLTELKLLLEESLMLRRLK 551
Query: 428 QHLLVQ 433
+L Q
Sbjct: 552 SEVLSQ 557
Score = 228 (85.3 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 49/117 (41%), Positives = 65/117 (55%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + + + EK I F+RIDG+T +RQ FQ S +
Sbjct: 631 KFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITA 690
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
L SA VVF EL +P +++QAEDR HR GQTS V+I+ AK T D+ W
Sbjct: 691 ANMGLTLHSAALVVFAELFWNPGVLIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLW 747
>UNIPROTKB|Q9NZC9 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA;IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0006259 "DNA metabolic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000733 "DNA strand renaturation" evidence=IDA;IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:CH471063 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094 CTD:50485
HOVERGEN:HBG054110 KO:K14440 OrthoDB:EOG4RFKRT EMBL:AF082179
EMBL:AF210842 EMBL:AF210833 EMBL:AF210834 EMBL:AF210835
EMBL:AF210836 EMBL:AF210837 EMBL:AF210838 EMBL:AF210839
EMBL:AF210840 EMBL:AF210841 EMBL:AF432223 EMBL:AC098820
EMBL:BC016482 EMBL:BC043341 EMBL:AL122076 EMBL:AK000117
IPI:IPI00386311 PIR:T34557 RefSeq:NP_001120679.1 RefSeq:NP_054859.2
UniGene:Hs.516674 ProteinModelPortal:Q9NZC9 SMR:Q9NZC9
IntAct:Q9NZC9 STRING:Q9NZC9 PhosphoSite:Q9NZC9 DMDM:60390962
PRIDE:Q9NZC9 DNASU:50485 Ensembl:ENST00000357276
Ensembl:ENST00000358207 GeneID:50485 KEGG:hsa:50485 UCSC:uc002vgc.4
GeneCards:GC02P217277 HGNC:HGNC:11102 HPA:HPA020337 MIM:242900
MIM:606622 neXtProt:NX_Q9NZC9 Orphanet:1830 PharmGKB:PA35952
InParanoid:Q9NZC9 OMA:FKQQNLS GenomeRNAi:50485 NextBio:53040
ArrayExpress:Q9NZC9 Bgee:Q9NZC9 CleanEx:HS_SMARCAL1
Genevestigator:Q9NZC9 GermOnline:ENSG00000138375 Uniprot:Q9NZC9
Length = 954
Score = 352 (129.0 bits), Expect = 1.7e-50, Sum P(2) = 1.7e-50
Identities = 88/254 (34%), Positives = 145/254 (57%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDR---LTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ R++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCR---AAMPVLKVAKRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQ 433
VM+RRLK +L Q
Sbjct: 640 AVMLRRLKSDVLSQ 653
Score = 262 (97.3 bits), Expect = 1.7e-50, Sum P(2) = 1.7e-50
Identities = 69/215 (32%), Positives = 102/215 (47%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + + + K + +RIDG+T +R+ FQLS
Sbjct: 727 KFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITA 786
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FSSA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W +
Sbjct: 787 ANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLI 846
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ ++ ++ A + + E+ E YL K + DL EL++
Sbjct: 847 QEKIKVLAEAGLSETN-FSEMT-ESTDYLYKDPKQQK-IYDLFQKSFEKEGSDMELLEAA 903
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
ES + A T+ + M D L +ES SP
Sbjct: 904 ESFDPGS--ASGTSGSSSQNMGDTL-DESSLTASP 935
>TAIR|locus:2007775 [details] [associations]
symbol:CHR18 "chromatin remodeling factor18" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 PROSITE:PS51467
SMART:SM00490 EMBL:CP002684 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14440 OMA:IDGKTPS IPI:IPI00530561
RefSeq:NP_175265.3 UniGene:At.38447 UniGene:At.71075
ProteinModelPortal:F4HWU9 SMR:F4HWU9 PRIDE:F4HWU9
EnsemblPlants:AT1G48310.1 GeneID:841251 KEGG:ath:AT1G48310
Uniprot:F4HWU9
Length = 673
Score = 341 (125.1 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 92/259 (35%), Positives = 139/259 (53%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EG+ F L+ GGR L+ADEMGLGKTLQAIA+ C + +L++ P
Sbjct: 163 KIPSHIEPKLLPFQREGIEFILQHGGRVLLADEMGLGKTLQAIAVTTCVQESWPVLIIAP 222
Query: 252 AILRLSWAEELERWLPFCLPADIHLVF---GHRNN------------PVHLTRFPRVVVI 296
+ LRL WA + +WL P+DI +V G N +HL +V
Sbjct: 223 SSLRLHWATMIHQWL-HVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFNIV-- 279
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEXXXXXXXXXXXXRIVLLSG 354
SY ++ +L K ++ D+ ++I DESH ++ +KRTS +LLSG
Sbjct: 280 SYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTS------ACLPVIKKAQYAILLSG 333
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP ++F Q+ L+P + +++ YC +G F + +EL+
Sbjct: 334 TPALSRPIELFKQLEALYPDVYRNI-HEYGGRYC--------KGGFFGTYQGASNHDELH 384
Query: 415 VLLKQTVMIRRLKQHLLVQ 433
L+K TVMIRRLK+ +L +
Sbjct: 385 NLMKATVMIRRLKKDVLTE 403
Score = 255 (94.8 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
Identities = 50/138 (36%), Positives = 79/138 (57%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH +L+ + +F+ +K +G +RIDG+T RQ+ V FQ +E+K
Sbjct: 486 KFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRA 545
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
+ ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A DT D+ W +
Sbjct: 546 AGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVV 605
Query: 652 NKSLRCVSSATNGKYDAL 669
L + +G+ +AL
Sbjct: 606 QSKLDNLGQMLDGQENAL 623
>UNIPROTKB|K7DXW5 [details] [associations]
symbol:Bt.28179 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001876 InterPro:IPR002711 Pfam:PF00176 Pfam:PF00271
Pfam:PF00641 Pfam:PF01844 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51194 SMART:SM00490 SMART:SM00547 InterPro:IPR003615
SMART:SM00507 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00630000089754 EMBL:DAAA02005001 EMBL:DAAA02005002
Ensembl:ENSBTAT00000038374 Uniprot:K7DXW5
Length = 1001
Score = 240 (89.5 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 56/147 (38%), Positives = 76/147 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ E +
Sbjct: 266 SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSI 325
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 326 QAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 385
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEG 676
LN+ + S NG+ + LQ A EG
Sbjct: 386 MLNRKAQVTGSTLNGRKEKLQ--AEEG 410
Score = 195 (73.7 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 47/141 (33%), Positives = 76/141 (53%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAI IA + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MGLGKTVQAIGIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXX 340
V +V V+ Y +L +++I+ Q++ ++IVDESH+++ T
Sbjct: 59 VGRISTSKVTVLGYGLLTTDAETLIDALNNQNFKVVIVDESHYMKSRSAT----RSRILL 114
Query: 341 XXXXXXXRIVLLSGTPSLSRP 361
R +LL+GTP+L RP
Sbjct: 115 PIVQKAKRAILLTGTPALGRP 135
Score = 179 (68.1 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K + A+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 820 KGYLQAVDNEGNPLCLRCQQPTCQTKQERKADAWDSRFCSLKCQEEFWIRSNNSYLRAKV 879
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 880 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKSLL 913
Score = 61 (26.5 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 28/86 (32%), Positives = 40/86 (46%)
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R +LL+GTP+L RP + Q++ G + + F G + Q D
Sbjct: 122 RAILLTGTPALGRPEETI-QLHSHCVGPVDQFGIYF-----------GRRSQW--DCRGA 167
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQ 433
L EL+ LL +MIRRLK +L Q
Sbjct: 168 SNLNELHQLLSD-IMIRRLKTEVLTQ 192
Score = 61 (26.5 bits), Expect = 3.4e-48, Sum P(5) = 3.4e-48
Identities = 43/177 (24%), Positives = 79/177 (44%)
Query: 679 YLEMSDKTDRGSEDL-TLDQVASS-----DQFQELMKVPESSEASDFRAI-NTNDEITAK 731
Y EM + G++ + +L+Q + D Q+ K ++S + + + ++ E AK
Sbjct: 565 YCEMCENPRGGADPIYSLNQTQNKNKNEKDDSQDTSKKIQTSSDGEKQVLAHSTPEPLAK 624
Query: 732 MNDKL-LEESKTDHSPTETDDHHNN----------VSQYTGRIHLYSCVPGTDSRPRPLF 780
+++ ES+ +P D+ N S+ T RIH+Y+ D
Sbjct: 625 SKEEISTTESEDRLTPQPGDEQLKNWPVYDTLMFCASKNTDRIHVYT----KDGNQMNC- 679
Query: 781 ESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL 833
+F P + LD E + LK+N R I F+ EW++L +++ K++ K QL
Sbjct: 680 -NFIPLDIKLDLWEDLPASFQLKQN---RSLILRFVREWSSLTAMKQ-KIIKKSGQL 731
Score = 37 (18.1 bits), Expect = 3.8e-25, Sum P(4) = 3.8e-25
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 618 QAEDR-AHRRGQTSAVN--IY---IFCAKDTTDESH 647
++EDR + G N +Y +FCA TD H
Sbjct: 633 ESEDRLTPQPGDEQLKNWPVYDTLMFCASKNTDRIH 668
>MGI|MGI:1859183 [details] [associations]
symbol:Smarcal1 "SWI/SNF related matrix associated, actin
dependent regulator of chromatin, subfamily a-like 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;IDA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 MGI:MGI:1859183 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 HOVERGEN:HBG054110 KO:K14440
OrthoDB:EOG4RFKRT OMA:FKQQNLS EMBL:AF088884 EMBL:AF209773
EMBL:AK042332 EMBL:AK043129 EMBL:AK077878 EMBL:AK083488
EMBL:AK154020 EMBL:AK169465 EMBL:BC029078 IPI:IPI00403353
IPI:IPI00553252 IPI:IPI00830468 IPI:IPI00918417 RefSeq:NP_061287.2
UniGene:Mm.274232 ProteinModelPortal:Q8BJL0 SMR:Q8BJL0
STRING:Q8BJL0 PhosphoSite:Q8BJL0 PaxDb:Q8BJL0 PRIDE:Q8BJL0
Ensembl:ENSMUST00000047615 Ensembl:ENSMUST00000136498 GeneID:54380
KEGG:mmu:54380 UCSC:uc007bko.2 UCSC:uc007bkq.2 UCSC:uc007bkr.2
UCSC:uc007bks.2 InParanoid:Q3TEQ9 NextBio:311200 Bgee:Q8BJL0
Genevestigator:Q8BJL0 GermOnline:ENSMUSG00000039354 Uniprot:Q8BJL0
Length = 910
Score = 338 (124.0 bits), Expect = 9.1e-48, Sum P(2) = 9.1e-48
Identities = 93/306 (30%), Positives = 162/306 (52%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIP-WVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L ++N ++ + ++++ +P VTL +L + P+ L +V +
Sbjct: 333 FLLEEHNKLIARSRELKQVQLDPLPKTVTLAFASQLEKT---------SPK-LKADVPEA 382
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ + L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LV
Sbjct: 383 DLSGVDAKLVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLV 442
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +W + RWLP P +I++V + LT V ++S+ +L +L + +
Sbjct: 443 VVPSSVRFTWEQAFLRWLPSLSPENINVVVTGKGR---LTA-GLVNIVSFDLLCKLERQL 498
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
+ + ++I+DESH ++ K R++LLSGTP++SRP +++ QI
Sbjct: 499 -KTPFKVVIIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQI 553
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + + F YCD K + G+ D+S L EL +LL++ +M+RRLK
Sbjct: 554 IAVKPTFFPQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLK 606
Query: 428 QHLLVQ 433
+L Q
Sbjct: 607 SDVLSQ 612
Score = 250 (93.1 bits), Expect = 9.1e-48, Sum P(2) = 9.1e-48
Identities = 64/210 (30%), Positives = 101/210 (48%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH +LD V + + K + +RIDG+T DR++ FQLS
Sbjct: 685 KFLVFAHHKVILDAVAKELERKNVQHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITA 744
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FS+A VVF EL +P +++QAEDR HR GQT++V+I+ AK T D+ W +
Sbjct: 745 ANMGLTFSTADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLI 804
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ ++ + A + + E+ E Y+ D + DL E ++
Sbjct: 805 QEKIKVLGEAGLSETN-FSEMT-EATDYVH-KDPKQKTIYDLFQQSFEDDGNDMEFLEAA 861
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESK 741
ES E T+ I+ + D LL+E +
Sbjct: 862 ESFELGS--TSGTSGNISQDLGD-LLDEDE 888
Score = 167 (63.8 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 55/189 (29%), Positives = 93/189 (49%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V ++S+ +L +L + + + + ++I+DESH ++ K R++LL
Sbjct: 483 VNIVSFDLLCKLERQL-KTPFKVVIIDESHFLKNIKTA----RCRAAVPILKVAKRVILL 537
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLE 411
SGTP++SRP +++ QI + P + + F YCD K + G+ D+S L
Sbjct: 538 SGTPAMSRPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRLPWGW------DYSGSSNLG 590
Query: 412 ELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSEIVS-AKAAVGVINDSEKDATN 470
EL +LL++ +M+RRLK +L Q I S AKAA ++ + K+ T
Sbjct: 591 ELKLLLEEAIMLRRLKSDVLSQLPAKQRKMVVVNP--GRISSRAKAA---LDAAAKEMTK 645
Query: 471 DKTPKDSDE 479
DKT + E
Sbjct: 646 DKTKQQQKE 654
Score = 39 (18.8 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 161 VEKLSHSIDTGRWNPCRPEH-----LSDEVVDEMIGKLPKSLLDVILPFQLE 207
+E S+ I T +W+ EH S E+ + LPK++ + QLE
Sbjct: 319 MESRSYDIKTRKWSFLLEEHNKLIARSRELKQVQLDPLPKTVT-LAFASQLE 369
>RGD|1306134 [details] [associations]
symbol:Smarcal1 "Swi/SNF related matrix associated, actin
dependent regulator of chromatin, subfamily a-like 1" species:10116
"Rattus norvegicus" [GO:0000733 "DNA strand renaturation"
evidence=ISO;ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0036310
"annealing helicase activity" evidence=ISO;ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
RGD:1306134 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 EMBL:CH474004 CTD:50485
HOGENOM:HOG000018734 HOVERGEN:HBG054110 KO:K14440 OrthoDB:EOG4RFKRT
EMBL:BC168154 IPI:IPI00362713 RefSeq:NP_001101692.1
UniGene:Rn.34679 STRING:B4F769 PhosphoSite:B4F769 PRIDE:B4F769
Ensembl:ENSRNOT00000022459 GeneID:316477 KEGG:rno:316477
UCSC:RGD:1306134 NextBio:670913 Genevestigator:B4F769
Uniprot:B4F769
Length = 910
Score = 346 (126.9 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 87/251 (34%), Positives = 139/251 (55%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
+V + + + L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA +
Sbjct: 376 DVPEADLSGVDAKLVSNLMPFQREGVSFAISKRGRLLLADDMGLGKTIQAICIAAFYRKE 435
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+LVV P+ +R +W + RWLP P DI++V + LT V ++S+ +L +
Sbjct: 436 WPLLVVVPSSVRFTWEQAFLRWLPSLSPEDINVVVTGKGR---LTA-GLVNIVSFDLLSK 491
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYD 363
L K + + + ++I+DESH ++ K R++LLSGTP++SRP +
Sbjct: 492 LEKQL-KTPFKVVIIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAE 546
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ QI + P + + F YCD K + G+ D+S L EL +LL++ VM
Sbjct: 547 LYTQIIAVKPTFFPQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAVM 599
Query: 423 IRRLKQHLLVQ 433
+RRLK +L Q
Sbjct: 600 LRRLKSDVLSQ 610
Score = 241 (89.9 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 63/215 (29%), Positives = 97/215 (45%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH +LD + + + K + +RIDG+T DR+ FQLS
Sbjct: 683 KFLVFAHHKVLLDAIAKELERKNVQHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITA 742
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FSSA VVF EL +P +++QAEDR HR GQT++V I+ AK T D+ W +
Sbjct: 743 ANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLI 802
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ ++ + A + + E+ E YL D + L E ++
Sbjct: 803 QEKIKVLGEAGLSETN-FSEMT-EATDYL-YKDPKQKTIYSLFQQSFEDDGNDMEFLEAA 859
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
ES E + N + ++ D E + D P
Sbjct: 860 ESFELGSTSGTSGNS--SQELGDITDENALADSPP 892
Score = 173 (66.0 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 55/188 (29%), Positives = 91/188 (48%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V ++S+ +L +L K + + + ++I+DESH ++ K R++LL
Sbjct: 481 VNIVSFDLLSKLEKQL-KTPFKVVIIDESHFLKNIKTA----RCRAAVPILKVAKRVILL 535
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLE 411
SGTP++SRP +++ QI + P + + F YCD K + G+ D+S L
Sbjct: 536 SGTPAMSRPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRLPWGW------DYSGSSNLG 588
Query: 412 ELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSEIVSAKAAVGVINDSEKDATND 471
EL +LL++ VM+RRLK +L Q AKAA ++ + K+ T D
Sbjct: 589 ELKLLLEEAVMLRRLKSDVLSQLPAKQRKMVVVNPGRIS-TRAKAA---LDAAAKEMTKD 644
Query: 472 KTPKDSDE 479
KT + E
Sbjct: 645 KTKQQQKE 652
>UNIPROTKB|E2RGL2 [details] [associations]
symbol:SMARCAL1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 CTD:50485 KO:K14440 OMA:FKQQNLS
EMBL:AAEX03018122 RefSeq:XP_536062.2 UniGene:Cfa.5087
Ensembl:ENSCAFT00000022962 GeneID:478903 KEGG:cfa:478903
NextBio:20854171 Uniprot:E2RGL2
Length = 961
Score = 346 (126.9 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 102/306 (33%), Positives = 163/306 (53%)
Query: 131 KLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEK---LSHSIDTGRWNPCRPEHLSDEVVD 187
K R +N +L N V +P V L+ + K L+ + + +PC + + +
Sbjct: 375 KTRKWNFLLE-EHNKLIQRVRCLPQVQLDPLPKTLTLAFASQLEKTSPCLTQPIPEA--- 430
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++ G PK L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA + +L
Sbjct: 431 DLSGVDPK-LVSSLLPFQRAGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFYQKEWPLL 489
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P+ +R +W + RWLP P I++V ++ LT V ++S+ +L +L K
Sbjct: 490 VVVPSSVRFTWEQAFLRWLPSLSPERINVVVTGKDR---LTA-GLVNIVSFDLLSKLEKQ 545
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
+ + + ++I+DESH ++ K R++LLSGTP++SRP +++ Q
Sbjct: 546 L-KTPFKVVIIDESHFLKNIKTA----RCRAAMPLLKVAKRVILLSGTPAMSRPAELYTQ 600
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
I + P + + F YCD K Q + G D+S L EL +LL++ VM+RRLK
Sbjct: 601 IIGVRPTFFPQF-HAFGLRYCDAKR-QPW-GW---DYSGSSNLGELKLLLEEAVMLRRLK 654
Query: 428 QHLLVQ 433
+L Q
Sbjct: 655 CDVLAQ 660
Score = 231 (86.4 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 60/195 (30%), Positives = 91/195 (46%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VL V + +K + + IDG+T DR+ FQL +
Sbjct: 734 KFLVFAHHKVVLSAVTRELEKKHVPHIHIDGSTSSADREDLCQQFQLFEKHAVAVLSITA 793
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L F+SA VVF EL +P ++LQAEDR HR GQ+S+V+I+ AK T D+ W +
Sbjct: 794 ANMGLTFTSADLVVFAELFWNPGVLLQAEDRVHRIGQSSSVSIHYLVAKGTADDYLWPLI 853
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ ++ + A + + E+ E +Y K + DL EL++
Sbjct: 854 QEKIKVLGEAGLSETN-FSEMT-EAPNYFYKDPKQQK-IYDLFQQSFEEDGSDLELLEAA 910
Query: 712 ESSEASDFRAINTND 726
ESS+ ND
Sbjct: 911 ESSDPRSASGAPGND 925
Score = 39 (18.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLD 199
++ S+ + T +WN EH ++++ + + LP+ LD
Sbjct: 367 MDSRSYDVKTRKWNFLLEEH--NKLI-QRVRCLPQVQLD 402
>UNIPROTKB|F1MDP3 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9913 "Bos taurus" [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0016568 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0008094
GeneTree:ENSGT00630000089754 IPI:IPI00711563 OMA:FKQQNLS
EMBL:DAAA02005900 Ensembl:ENSBTAT00000005013 Uniprot:F1MDP3
Length = 940
Score = 338 (124.0 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 93/284 (32%), Positives = 154/284 (54%)
Query: 150 VEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGV 209
V G+P V L+ + K + ++ + ++D + + + ++ L+ +LPFQ GV
Sbjct: 384 VRGLPQVQLDPLPK-TLTLFRAQLQKTSLSPVAD-IPEADLSRVDSKLVSSLLPFQRAGV 441
Query: 210 RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFC 269
F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + RWLP
Sbjct: 442 NFAIAQRGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVVVPSSVRFTWEQAFCRWLPSL 501
Query: 270 LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
P DI++V ++ LT V ++S+ +L +L K + + + ++I+DESH ++ K
Sbjct: 502 NPLDINVVVTGKDR---LTD-GLVNIVSFDLLSKLEKQL-KPPFKVVIIDESHFLKNIKT 556
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
R++LLSGTP++SRP +++ QI + P + + F YC
Sbjct: 557 A----RCRAAMPLLKVAKRVILLSGTPAMSRPAELYTQILAVRPTFFPQF-HAFGLRYCG 611
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
K Q + G D+S L EL +LL++ VM+RRLK +L Q
Sbjct: 612 AKR-QPW-GW---DYSGSSNLGELKLLLEEAVMLRRLKGDVLSQ 650
Score = 234 (87.4 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 63/202 (31%), Positives = 108/202 (53%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + + + K + +RIDG+T DR+++ SF ++
Sbjct: 723 KFLVFAHHKVVLDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALRGVLSITAA 782
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FSSA VVF EL +P +++QAEDR HR GQ S+V+I+ A+ T D+ W +
Sbjct: 783 NMG-LTFSSADLVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLI 841
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQEL-- 707
+ ++ + A L E ++ EM++ TD S+D ++ + Q F+E
Sbjct: 842 QEKIKVLGEA------GLSE-----TNFSEMTEATDYFSKDSKQQKIYNLFQKSFEEDGN 890
Query: 708 -MKVPESSEASDFRAINTNDEI 728
M++ E++E+ D + +T D++
Sbjct: 891 DMELLEAAESFDPGSQDTGDKL 912
Score = 43 (20.2 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTG 761
E +EA+D+ + ++ + + K EE D E + + SQ TG
Sbjct: 860 EMTEATDYFSKDSKQQKIYNLFQKSFEEDGNDMELLEAAESFDPGSQDTG 909
>UNIPROTKB|Q9TTA5 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9913 "Bos taurus" [GO:0000733 "DNA strand renaturation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
EMBL:AF173643 IPI:IPI00711563 RefSeq:NP_788839.1 UniGene:Bt.16022
ProteinModelPortal:Q9TTA5 STRING:Q9TTA5 PRIDE:Q9TTA5 GeneID:338072
KEGG:bta:338072 CTD:50485 HOGENOM:HOG000018734 HOVERGEN:HBG054110
InParanoid:Q9TTA5 KO:K14440 OrthoDB:EOG4RFKRT NextBio:20812522
Uniprot:Q9TTA5
Length = 941
Score = 332 (121.9 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 86/250 (34%), Positives = 139/250 (55%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
++ + + ++ L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA +
Sbjct: 417 DIPEADLSRVDSKLVSSLLPFQRAGVNFAIAQRGRLLLADDMGLGKTIQAICIAAYYRKE 476
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+LVV P+ +R +W + RWLP P DI++V ++ LT V ++S+ +L +
Sbjct: 477 WPLLVVVPSSVRFTWEQAFCRWLPSLNPLDINVVVTGKDR---LTD-GLVNIVSFDLLSK 532
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYD 363
L K + + + ++I+DESH ++ K R++LLSGTP++SRP +
Sbjct: 533 LEKQL-KPPFKVVIIDESHFLKNIKTA-----VCAAMPLLKVAKRVILLSGTPAMSRPAE 586
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ QI + P + + F YC K Q + G D+S L EL +LL++ VM+
Sbjct: 587 LYTQILAVRPTFFPQF-HAFGLRYCGAKR-QPW-GW---DYSGSSNLGELKLLLEEAVML 640
Query: 424 RRLKQHLLVQ 433
RRLK +L Q
Sbjct: 641 RRLKGDVLSQ 650
Score = 234 (87.4 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 63/202 (31%), Positives = 108/202 (53%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + + + K + +RIDG+T DR+++ SF ++
Sbjct: 724 KFLVFAHHKVVLDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALRGVLSITAA 783
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FSSA VVF EL +P +++QAEDR HR GQ S+V+I+ A+ T D+ W +
Sbjct: 784 NMG-LTFSSADLVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLI 842
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQEL-- 707
+ ++ + A L E ++ EM++ TD S+D ++ + Q F+E
Sbjct: 843 QEKIKVLGEA------GLSE-----TNFSEMTEATDYFSKDSKQQKIYNLFQKSFEEDGN 891
Query: 708 -MKVPESSEASDFRAINTNDEI 728
M++ E++E+ D + +T D++
Sbjct: 892 DMELLEAAESFDPGSQDTGDKL 913
Score = 43 (20.2 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTG 761
E +EA+D+ + ++ + + K EE D E + + SQ TG
Sbjct: 861 EMTEATDYFSKDSKQQKIYNLFQKSFEEDGNDMELLEAAESFDPGSQDTG 910
>UNIPROTKB|H7BYI2 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC098820 HGNC:HGNC:11102
ProteinModelPortal:H7BYI2 Ensembl:ENST00000392128 Bgee:H7BYI2
Uniprot:H7BYI2
Length = 796
Score = 262 (97.3 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 69/215 (32%), Positives = 102/215 (47%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K ++FAHH VLD + + + K + +RIDG+T +R+ FQLS
Sbjct: 569 KFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITA 628
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L FSSA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W +
Sbjct: 629 ANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLI 688
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ ++ ++ A + + E+ E YL K + DL EL++
Sbjct: 689 QEKIKVLAEAGLSETN-FSEMT-ESTDYLYKDPKQQK-IYDLFQKSFEKEGSDMELLEAA 745
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
ES + A T+ + M D L +ES SP
Sbjct: 746 ESFDPGS--ASGTSGSSSQNMGDTL-DESSLTASP 777
Score = 212 (79.7 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 46/128 (35%), Positives = 77/128 (60%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 280 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 339
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 340 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDR---LTA-GLINIVSFDL 395
Query: 301 LHRLRKSM 308
L +L K +
Sbjct: 396 LSKLEKQL 403
Score = 137 (53.3 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSK 406
R++LLSGTP++SRP +++ QI + P + + F YCD K + G+ D+S
Sbjct: 416 RVILLSGTPAMSRPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSG 468
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQ 433
L EL +LL++ VM+RRLK +L Q
Sbjct: 469 SSNLGELKLLLEEAVMLRRLKSDVLSQ 495
>FB|FBgn0031655 [details] [associations]
symbol:Marcal1 "Marcal1" species:7227 "Drosophila
melanogaster" [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005705 "polytene chromosome interband" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006357 GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 GO:GO:0005705 GeneTree:ENSGT00630000089754 KO:K14440
OMA:IDGKTPS EMBL:BT011033 RefSeq:NP_608883.1 UniGene:Dm.18320
ProteinModelPortal:Q9VMX6 SMR:Q9VMX6 PaxDb:Q9VMX6 PRIDE:Q9VMX6
EnsemblMetazoa:FBtr0078992 GeneID:33709 KEGG:dme:Dmel_CG3753
UCSC:CG3753-RA CTD:33709 FlyBase:FBgn0031655 InParanoid:Q9VMX6
OrthoDB:EOG47D7XT PhylomeDB:Q9VMX6 GenomeRNAi:33709 NextBio:784900
Bgee:Q9VMX6 Uniprot:Q9VMX6
Length = 755
Score = 321 (118.1 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 98/304 (32%), Positives = 150/304 (49%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY + T ++A ++ P+V +N + K +D P PE +
Sbjct: 192 FDLSDYQSLKT---HAADLK----PYVHMNGIPK--KVLDLCGQPPVVPER-------SV 235
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L D ++PFQ +GV F + + GR +I DEMGLGKT QA+A+A F +LV
Sbjct: 236 LASIEPKLADQLMPFQQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVC 295
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
A R SWA+ + LP +P IH V NN +++ +V++ SY M+ R ++
Sbjct: 296 TTASTRDSWAKHIMDLLPK-VP--IHYVQVLNNNQLYVGE-AKVLITSYNMMERHEDKLM 351
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
++ + +I DESH ++ SK R+VLLSGTP+LSRP ++F Q+
Sbjct: 352 QRKFGFIIFDESHTLKNSKAKC----TTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQ 407
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
M+ + +F YCD G Q D + LEEL V+L M+RR K
Sbjct: 408 MIDGKFMNFM--EFTTRYCD-----GKQSTFGWDANGQSNLEELKVILHLKYMLRRTKVE 460
Query: 430 LLVQ 433
+L Q
Sbjct: 461 VLPQ 464
Score = 210 (79.0 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 61/211 (28%), Positives = 94/211 (44%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXX 591
K IIFAHH ++D + +F+S + ++RIDG T R +V +FQ + K
Sbjct: 537 KFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKA 596
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
+ ++A+ +VF EL +PS + QAE RAHR GQT V A +T D+ W L
Sbjct: 597 CNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADDIIWNML 656
Query: 652 NKSLRCVSS----ATN---GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQF 704
+S A N + A + + Y S T E ++ Q S+
Sbjct: 657 KNKQEVLSKVGIFAENLQKATHTAAPTSSHKIEEYFSPSTSTSLEPERNSIKQYFSTIPA 716
Query: 705 QELMKVPESSEASDFRAIN-TNDEITAKMND 734
+E PE + ++ +N +I A ND
Sbjct: 717 KE---PPEQNNNTEMTKVNKAESDIAAFFND 744
>RGD|1564952 [details] [associations]
symbol:Zranb3 "zinc finger, RAN-binding domain containing 3"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0009411 "response to UV" evidence=ISO] [GO:0031297 "replication
fork processing" evidence=ISO] [GO:0036292 "DNA rewinding"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0048478 "replication fork protection"
evidence=ISO] [GO:0070530 "K63-linked polyubiquitin binding"
evidence=ISO] [GO:0003678 "DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1564952 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00630000089754 IPI:IPI00950819
Ensembl:ENSRNOT00000067965 UCSC:RGD:1564952 ArrayExpress:D3ZVX7
Uniprot:D3ZVX7
Length = 465
Score = 282 (104.3 bits), Expect = 7.4e-42, Sum P(2) = 7.4e-42
Identities = 77/214 (35%), Positives = 119/214 (55%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAIAI+ + +L+V P+ LR W EELE+W+P P +I+++ +
Sbjct: 1 MGLGKTIQAIAISYFYKEEWPLLIVVPSSLRYPWIEELEKWIPELEPEEINVITNKTDTG 60
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXX 340
T RV V+ Y +L ++++E Q++ ++IVDESH+++ RT+ +
Sbjct: 61 RIATS--RVTVLGYGLLTTDAETLLEALDRQNFRVVIVDESHYMK--SRTAARSKILLPM 116
Query: 341 XXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
R +LL+GTP+L RP ++F QI L+P G ++AK YC+ Y G+
Sbjct: 117 VQKAQ--RAILLTGTPALGRPEELFMQIEALFPQRFG-TWVEYAKRYCNAHI--RYFGKR 171
Query: 401 FQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQ 433
Q +G L EL+ LL +MIRRLK +L Q
Sbjct: 172 RQWDCRGASNLSELHQLLND-IMIRRLKSEVLSQ 204
Score = 237 (88.5 bits), Expect = 7.4e-42, Sum P(2) = 7.4e-42
Identities = 52/141 (36%), Positives = 73/141 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ + +
Sbjct: 278 SLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSI 337
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 338 QAAGQGLTFTAASHVVFAELFWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWA 397
Query: 650 NLNKSLRCVSSATNGKYDALQ 670
LN+ + S NG+ + LQ
Sbjct: 398 MLNRKAQVTGSTLNGRKEKLQ 418
Score = 38 (18.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 699 ASSDQFQELMKVPES 713
AS +++Q+LM+ P++
Sbjct: 227 ASFEEWQKLMRAPDA 241
>UNIPROTKB|F8WCT9 [details] [associations]
symbol:ZRANB3 "Endonuclease ZRANB3" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012450 EMBL:AC016742 EMBL:AC017031
EMBL:AC020602 EMBL:AC064850 HGNC:HGNC:25249 ChiTaRS:ZRANB3
IPI:IPI00878993 ProteinModelPortal:F8WCT9 Ensembl:ENST00000403017
ArrayExpress:F8WCT9 Bgee:F8WCT9 Uniprot:F8WCT9
Length = 428
Score = 386 (140.9 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 93/252 (36%), Positives = 140/252 (55%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNAT----RSRILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q +G L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQ 433
MIRRLK +L Q
Sbjct: 253 MIRRLKTEVLTQ 264
Score = 90 (36.7 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ
Sbjct: 338 SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQ 385
>WB|WBGene00015806 [details] [associations]
symbol:C16A3.1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271
Pfam:PF07443 PROSITE:PS51194 PROSITE:PS51467 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0000003
GO:GO:0006357 GO:GO:0016568 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
GO:GO:0008094 GeneTree:ENSGT00630000089754 EMBL:FO080367
HOGENOM:HOG000018734 KO:K14440 RefSeq:NP_498400.1
RefSeq:NP_498401.2 RefSeq:NP_741192.1 UniGene:Cel.8144
ProteinModelPortal:Q8MNV7 SMR:Q8MNV7 PaxDb:Q8MNV7 PRIDE:Q8MNV7
EnsemblMetazoa:C16A3.1c GeneID:175907 KEGG:cel:CELE_C16A3.1
UCSC:C16A3.1a CTD:175907 WormBase:C16A3.1a WormBase:C16A3.1b
WormBase:C16A3.1c InParanoid:Q8MNV7 OMA:IDGKTPS NextBio:890246
Uniprot:Q8MNV7
Length = 690
Score = 301 (111.0 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 80/240 (33%), Positives = 130/240 (54%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 195 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 254
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 255 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 309
Query: 313 WALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K ++LLSGTP+LSRP ++F QI ++
Sbjct: 310 YRTIIFDESHMLKDGKA----RRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 365
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLL 431
L ++FA YCD G QG+ + +KG EEL ++ + +MIRRLK +L
Sbjct: 366 HKLFTNF-HEFAIRYCD-----GKQGRFCFE-AKGCTNSEELAAIMFKRLMIRRLKADVL 418
Score = 216 (81.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 48/132 (36%), Positives = 75/132 (56%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV-HSFQLSNEVK 583
D PR K++IFAHH VLD +Q ++++ +G +RIDG T P R++A+ SFQ + ++
Sbjct: 490 DAPPR--KVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKT-PSHRRTALCDSFQTDDNIR 546
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++A VVF E+ +P ++QAEDRAHR GQ +V + AK T
Sbjct: 547 VAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTA 606
Query: 644 DESHWQNLNKSL 655
D+ W + + L
Sbjct: 607 DDVMWNMVQQKL 618
>UNIPROTKB|Q8MNV7 [details] [associations]
symbol:C16A3.1 "Putative SMARCAL1-like protein"
species:6239 "Caenorhabditis elegans" [GO:0000733 "DNA strand
renaturation" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036310 "annealing helicase activity"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010003
Pfam:PF00176 Pfam:PF00271 Pfam:PF07443 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0000003 GO:GO:0006357 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00630000089754 EMBL:FO080367 HOGENOM:HOG000018734
KO:K14440 RefSeq:NP_498400.1 RefSeq:NP_498401.2 RefSeq:NP_741192.1
UniGene:Cel.8144 ProteinModelPortal:Q8MNV7 SMR:Q8MNV7 PaxDb:Q8MNV7
PRIDE:Q8MNV7 EnsemblMetazoa:C16A3.1c GeneID:175907
KEGG:cel:CELE_C16A3.1 UCSC:C16A3.1a CTD:175907 WormBase:C16A3.1a
WormBase:C16A3.1b WormBase:C16A3.1c InParanoid:Q8MNV7 OMA:IDGKTPS
NextBio:890246 Uniprot:Q8MNV7
Length = 690
Score = 301 (111.0 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 80/240 (33%), Positives = 130/240 (54%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 195 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 254
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 255 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 309
Query: 313 WALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K ++LLSGTP+LSRP ++F QI ++
Sbjct: 310 YRTIIFDESHMLKDGKA----RRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 365
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLL 431
L ++FA YCD G QG+ + +KG EEL ++ + +MIRRLK +L
Sbjct: 366 HKLFTNF-HEFAIRYCD-----GKQGRFCFE-AKGCTNSEELAAIMFKRLMIRRLKADVL 418
Score = 216 (81.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 48/132 (36%), Positives = 75/132 (56%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV-HSFQLSNEVK 583
D PR K++IFAHH VLD +Q ++++ +G +RIDG T P R++A+ SFQ + ++
Sbjct: 490 DAPPR--KVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKT-PSHRRTALCDSFQTDDNIR 546
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++A VVF E+ +P ++QAEDRAHR GQ +V + AK T
Sbjct: 547 VAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTA 606
Query: 644 DESHWQNLNKSL 655
D+ W + + L
Sbjct: 607 DDVMWNMVQQKL 618
>GENEDB_PFALCIPARUM|PFF0225w [details] [associations]
symbol:PFF0225w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002711 Pfam:PF00176 Pfam:PF01844
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
GO:GO:0004519 InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL844505 RefSeq:XP_966036.1
ProteinModelPortal:C6KSP4 EnsemblProtists:PFF0225w:mRNA
GeneID:3885708 KEGG:pfa:PFF0225w EuPathDB:PlasmoDB:PF3D7_0604600
HOGENOM:HOG000281431 ProtClustDB:CLSZ2445154 Uniprot:C6KSP4
Length = 1712
Score = 338 (124.0 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 81/249 (32%), Positives = 139/249 (55%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
+ + + ++E+ KLP + VIL +QL+ + F ++ GR LIADEMGLGKTLQAI+I
Sbjct: 676 QEIKNICLNEIKKKLPIRIQKVILTYQLQAIYFFFKKRGRILIADEMGLGKTLQAISIFY 735
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISY 298
F +L++ PA L+++W E+E++LP P ++ ++ + P + + +++++S+
Sbjct: 736 -FYHLYPVLIITPASLKINWFSEIEKYLPAFDPQNVLIINSSNDMPKCASSY-KIIIVSF 793
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSL 358
+ +L + E + L+IVDESH +R ++ + ++ LSGTPS+
Sbjct: 794 NIYKKLYNLLKEIQFHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRKTKHVLFLSGTPSI 853
Query: 359 SRPYDIFHQINMLW--PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+RP +IFHQI L + K K F + YC K Y+G+ + + +R E +
Sbjct: 854 NRPINIFHQIKYLINNKNIFPKNKIIFGEDYCK-KYF--YRGEKI--YEENLRSWEFHYF 908
Query: 417 LKQTVMIRR 425
L + VMIRR
Sbjct: 909 LNKIVMIRR 917
Score = 113 (44.8 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKP---LSLEQRRK 982
+LFC C + Y L+ S LR ++ + G+C CQLDC L+K IK + Q+
Sbjct: 1578 NLFCEGKCRKLYFLKKSSCSLRRLIYERDKGICNMCQLDCTNLIKQIKNNKYFEINQKID 1637
Query: 983 YIVRVAP 989
Y +++ P
Sbjct: 1638 YFIKMYP 1644
Score = 84 (34.6 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 35/154 (22%), Positives = 62/154 (40%)
Query: 524 IDVNPRSNKMIIFAHHLKVL----DGVQEFISEK------GIGFVRIDGNTLPRDRQSAV 573
I+ N + K IIF +H+ V D + + I +K I +V ++G +++ +
Sbjct: 1080 IEKNFPNKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGCIPEKEKIEKI 1139
Query: 574 HSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
FQ + LDFS F+E P + + Q E R R+ Q
Sbjct: 1140 LYFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRLFRKNQKHNTY 1199
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
++ F + H + N+ + C S++T D
Sbjct: 1200 VFYFLLQKGLGSDH-KTWNRFILC-SNSTRSIID 1231
Score = 59 (25.8 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 902 DEPLCKLCQKTCKS--KNAKNAEYFE 925
D+ +C +CQ C + K KN +YFE
Sbjct: 1606 DKGICNMCQLDCTNLIKQIKNNKYFE 1631
Score = 50 (22.7 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 51/242 (21%), Positives = 90/242 (37%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGY---RHAIQAFI 812
++ +T RIH+Y T+ F +ELD + I+ +E + + F+
Sbjct: 1376 INTFTNRIHVYYKNKKTN---------FSIQELDTIKKINKNNQETKNIFILKMCAKNFL 1426
Query: 813 NEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHXXXXXXXXXXXRRTTPSLEISHPL 872
+N L E+ + K + +S+ L Y K N+ +R ++ + H
Sbjct: 1427 CNYNKLNTNEKKLIEHKKCDINISL-LNYWKHIDNNKSNNKQNNLIFQRYIKNVPLKHKT 1485
Query: 873 PSGAEWKKVRICSGSRKK-EKEYTQGWTINDEPL-CKLCQ-KTCKSKNAKNAE-----YF 924
+ K I + + K E Y Q W + C C+ K SKN + E Y
Sbjct: 1486 -----YVKAYIENSFKGKFEMFYYQEWNSKENLFKCLHCKNKIPLSKNIIHEENQIFQYL 1540
Query: 925 EDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTN-----CQLDCHKLVKHIKPLSLEQ 979
+ D + + + L++ I+ + N C+ C KL +K S
Sbjct: 1541 HQINAQQDIIKRFHKEINNLKLKQ-YNNIQKIIICNENNLFCEGKCRKLY-FLKKSSCSL 1598
Query: 980 RR 981
RR
Sbjct: 1599 RR 1600
Score = 38 (18.4 bits), Expect = 0.00090, Sum P(4) = 0.00090
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
L Y F+K + K + Y + Q + + E N+ L +
Sbjct: 642 LSNNTYIFSKQKIEKKIINHYYHKKIQKIKRQMNQEIKNICLNE 685
Score = 37 (18.1 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 724 TNDEI-TAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYS 767
+ND + N +++E+ + + D H N+ + + IH S
Sbjct: 1246 SNDALHLINNNQNVIQENIKEQKCDKHDKHVNHQNCFYTNIHTIS 1290
>UNIPROTKB|C6KSP4 [details] [associations]
symbol:PFF0225w "DNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002711 Pfam:PF00176 Pfam:PF01844 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 GO:GO:0004519
InterPro:IPR003615 SMART:SM00507 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL844505 RefSeq:XP_966036.1
ProteinModelPortal:C6KSP4 EnsemblProtists:PFF0225w:mRNA
GeneID:3885708 KEGG:pfa:PFF0225w EuPathDB:PlasmoDB:PF3D7_0604600
HOGENOM:HOG000281431 ProtClustDB:CLSZ2445154 Uniprot:C6KSP4
Length = 1712
Score = 338 (124.0 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 81/249 (32%), Positives = 139/249 (55%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
+ + + ++E+ KLP + VIL +QL+ + F ++ GR LIADEMGLGKTLQAI+I
Sbjct: 676 QEIKNICLNEIKKKLPIRIQKVILTYQLQAIYFFFKKRGRILIADEMGLGKTLQAISIFY 735
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISY 298
F +L++ PA L+++W E+E++LP P ++ ++ + P + + +++++S+
Sbjct: 736 -FYHLYPVLIITPASLKINWFSEIEKYLPAFDPQNVLIINSSNDMPKCASSY-KIIIVSF 793
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSL 358
+ +L + E + L+IVDESH +R ++ + ++ LSGTPS+
Sbjct: 794 NIYKKLYNLLKEIQFHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRKTKHVLFLSGTPSI 853
Query: 359 SRPYDIFHQINMLW--PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+RP +IFHQI L + K K F + YC K Y+G+ + + +R E +
Sbjct: 854 NRPINIFHQIKYLINNKNIFPKNKIIFGEDYCK-KYF--YRGEKI--YEENLRSWEFHYF 908
Query: 417 LKQTVMIRR 425
L + VMIRR
Sbjct: 909 LNKIVMIRR 917
Score = 113 (44.8 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKP---LSLEQRRK 982
+LFC C + Y L+ S LR ++ + G+C CQLDC L+K IK + Q+
Sbjct: 1578 NLFCEGKCRKLYFLKKSSCSLRRLIYERDKGICNMCQLDCTNLIKQIKNNKYFEINQKID 1637
Query: 983 YIVRVAP 989
Y +++ P
Sbjct: 1638 YFIKMYP 1644
Score = 84 (34.6 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 35/154 (22%), Positives = 62/154 (40%)
Query: 524 IDVNPRSNKMIIFAHHLKVL----DGVQEFISEK------GIGFVRIDGNTLPRDRQSAV 573
I+ N + K IIF +H+ V D + + I +K I +V ++G +++ +
Sbjct: 1080 IEKNFPNKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGCIPEKEKIEKI 1139
Query: 574 HSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
FQ + LDFS F+E P + + Q E R R+ Q
Sbjct: 1140 LYFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRLFRKNQKHNTY 1199
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
++ F + H + N+ + C S++T D
Sbjct: 1200 VFYFLLQKGLGSDH-KTWNRFILC-SNSTRSIID 1231
Score = 59 (25.8 bits), Expect = 1.5e-29, Sum P(4) = 1.5e-29
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 902 DEPLCKLCQKTCKS--KNAKNAEYFE 925
D+ +C +CQ C + K KN +YFE
Sbjct: 1606 DKGICNMCQLDCTNLIKQIKNNKYFE 1631
Score = 50 (22.7 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 51/242 (21%), Positives = 90/242 (37%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGY---RHAIQAFI 812
++ +T RIH+Y T+ F +ELD + I+ +E + + F+
Sbjct: 1376 INTFTNRIHVYYKNKKTN---------FSIQELDTIKKINKNNQETKNIFILKMCAKNFL 1426
Query: 813 NEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHXXXXXXXXXXXRRTTPSLEISHPL 872
+N L E+ + K + +S+ L Y K N+ +R ++ + H
Sbjct: 1427 CNYNKLNTNEKKLIEHKKCDINISL-LNYWKHIDNNKSNNKQNNLIFQRYIKNVPLKHKT 1485
Query: 873 PSGAEWKKVRICSGSRKK-EKEYTQGWTINDEPL-CKLCQ-KTCKSKNAKNAE-----YF 924
+ K I + + K E Y Q W + C C+ K SKN + E Y
Sbjct: 1486 -----YVKAYIENSFKGKFEMFYYQEWNSKENLFKCLHCKNKIPLSKNIIHEENQIFQYL 1540
Query: 925 EDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTN-----CQLDCHKLVKHIKPLSLEQ 979
+ D + + + L++ I+ + N C+ C KL +K S
Sbjct: 1541 HQINAQQDIIKRFHKEINNLKLKQ-YNNIQKIIICNENNLFCEGKCRKLY-FLKKSSCSL 1598
Query: 980 RR 981
RR
Sbjct: 1599 RR 1600
Score = 38 (18.4 bits), Expect = 0.00090, Sum P(4) = 0.00090
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
L Y F+K + K + Y + Q + + E N+ L +
Sbjct: 642 LSNNTYIFSKQKIEKKIINHYYHKKIQKIKRQMNQEIKNICLNE 685
Score = 37 (18.1 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 724 TNDEI-TAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYS 767
+ND + N +++E+ + + D H N+ + + IH S
Sbjct: 1246 SNDALHLINNNQNVIQENIKEQKCDKHDKHVNHQNCFYTNIHTIS 1290
>GENEDB_PFALCIPARUM|PF13_0308 [details] [associations]
symbol:PF13_0308 "DNA helicase" species:5833
"Plasmodium falciparum" [GO:0003678 "DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 EMBL:AL844509 RefSeq:XP_001350286.1
ProteinModelPortal:Q8IDD0 EnsemblProtists:PF13_0308:mRNA
GeneID:814271 KEGG:pfa:PF13_0308 EuPathDB:PlasmoDB:PF3D7_1357500
HOGENOM:HOG000281688 ProtClustDB:CLSZ2433477 Uniprot:Q8IDD0
Length = 906
Score = 341 (125.1 bits), Expect = 3.3e-27, P = 3.3e-27
Identities = 132/490 (26%), Positives = 222/490 (45%)
Query: 48 STEPTHFPKSALADPNSTTQLPENFR-----VRLEICSPDSFSVTPLAIEGFVYPGEEEC 102
S+E ++ + ++D N+ PE + V EI S DSF + +
Sbjct: 187 SSEYRNYEEKVMSDINNAYNQPEEKKEFDIIVAFEIFSDDSFKIVQKDNNNKKFVSFRNF 246
Query: 103 LRR-LGQWLSDVMPSHYTQNNSGGKACV-YKLRDYNPVLTCLKNSAGI--EVEGIPWVTL 158
+ + L + +S++ P+ NN C+ ++ Y VL LK I V IP L
Sbjct: 247 ISKDLFKIISELNPTLKKINNY---TCITFEAEKYEYVLNNLKEKCTILGGVHTIPNFLL 303
Query: 159 NVVEKLSHSIDTGRWNPCRPEHLSDEVVD---EMIGKLPKSL---LDVILP-FQLEGVRF 211
+ + + R + L++ + + KL L L V L FQ EGV F
Sbjct: 304 KCFKNYTKFSEPQRISEITANILTNTMCSYTKQHYDKLDHLLGEKLSVELRNFQREGVFF 363
Query: 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP 271
GL++ GR LI DEMGLGKTLQA+A+ A + +VVCP+ +R W ++ RWL +
Sbjct: 364 GLKKNGRVLIGDEMGLGKTLQALALMAFYKDDWPFIVVCPSSIRFQWKDQALRWLSHLIR 423
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKR 329
+ H+ +N + ++++ISY ++ + K + + +I DESH+++ SKR
Sbjct: 424 EE-HICVV-KNGKTDIPSNTKMIIISYELITKNDK--YQDKYKSIICDESHYLKNSLSKR 479
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
T R VLLSGTP+L++P +++ QI+ + P ++F YC
Sbjct: 480 TK------VITPIIKNAKRCVLLSGTPALNKPSELYEQISSIMPNFFNY--HEFCDRYC- 530
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXX--- 446
K Y ++ ++ EEL++ L T+MIRRLK+ +L +
Sbjct: 531 FKDKNLYTKKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPVEIPQK 588
Query: 447 XXSEIVS------AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500
SEI++ +K + + +N K D D++ + L KI+ G A
Sbjct: 589 ELSEILNYYKKLESKKNINFHDIDNIHLSNWSNSKSEDGDDENLSISHLFKIT----GYA 644
Query: 501 KLSGFREWLS 510
K+ +E++S
Sbjct: 645 KVKAIKEYIS 654
Score = 324 (119.1 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 116/431 (26%), Positives = 201/431 (46%)
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R VLLSGTP+L++P +++ QI+ + P ++F YC K Y ++ ++
Sbjct: 492 RCVLLSGTPALNKPSELYEQISSIMPNFFNY--HEFCDRYC-FKDKNLYTKKI--EYVGC 546
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXX---XXSEIVSA-KAAVGVIND 463
EEL++ L T+MIRRLK+ +L + SEI++ K N
Sbjct: 547 KHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPVEIPQKELSEILNYYKKLESKKNI 606
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGA 521
+ D N S+ + G L IS ++ G AK+ +E++S
Sbjct: 607 NFHDIDNIHLSNWSNSKSEDGDDENLS-ISHLFKITGYAKVKAIKEYISY---------L 656
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
D D+ K ++F HH V+D V+ F+ E+ ++R+DG T R+ + +FQ +
Sbjct: 657 IDADI-----KFLLFCHHKLVMDEVETFLKEQKCSYIRVDGLTPMEKREIYIKNFQNDDN 711
Query: 582 VKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAK 640
VK L+ ++A VVF EL P ++QAEDRAHR G VNI+ A+
Sbjct: 712 VKIALLSITACGMGLNLTAANTVVFGELFWVPGQIIQAEDRAHRIGTAHDVVNIHYLIAQ 771
Query: 641 DTTDESHWQNLNKSLRCVSSATNGKYDAL--QEIAVEGVSYLEMSDKTDRG--SEDLTLD 696
+T DE W+ +N+ +++A NG D+L +E+ +++++ T++ + +T
Sbjct: 772 NTIDEIVWKIINRKWNTLTTALNGIEDSLNVKEVNKFDKFMVDLTNDTNKSYPTSLVTTP 831
Query: 697 QVA--SSDQ--FQELMKVPESSEASDFRAINT-NDEITAKMNDKLLEESKTDHSPTETDD 751
+V SS+ F ++ + DF N N+ + N+ + + S D SP +D
Sbjct: 832 KVRRKSSEHGTFHNSSPKKKNRDIRDFFTANKCNESVEKSWNNNINKRSYHD-SPM--ND 888
Query: 752 HHNNVSQYTGR 762
N ++ +
Sbjct: 889 SPNTTLKFLSK 899
>UNIPROTKB|Q8IDD0 [details] [associations]
symbol:PF13_0308 "DNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
EMBL:AL844509 RefSeq:XP_001350286.1 ProteinModelPortal:Q8IDD0
EnsemblProtists:PF13_0308:mRNA GeneID:814271 KEGG:pfa:PF13_0308
EuPathDB:PlasmoDB:PF3D7_1357500 HOGENOM:HOG000281688
ProtClustDB:CLSZ2433477 Uniprot:Q8IDD0
Length = 906
Score = 341 (125.1 bits), Expect = 3.3e-27, P = 3.3e-27
Identities = 132/490 (26%), Positives = 222/490 (45%)
Query: 48 STEPTHFPKSALADPNSTTQLPENFR-----VRLEICSPDSFSVTPLAIEGFVYPGEEEC 102
S+E ++ + ++D N+ PE + V EI S DSF + +
Sbjct: 187 SSEYRNYEEKVMSDINNAYNQPEEKKEFDIIVAFEIFSDDSFKIVQKDNNNKKFVSFRNF 246
Query: 103 LRR-LGQWLSDVMPSHYTQNNSGGKACV-YKLRDYNPVLTCLKNSAGI--EVEGIPWVTL 158
+ + L + +S++ P+ NN C+ ++ Y VL LK I V IP L
Sbjct: 247 ISKDLFKIISELNPTLKKINNY---TCITFEAEKYEYVLNNLKEKCTILGGVHTIPNFLL 303
Query: 159 NVVEKLSHSIDTGRWNPCRPEHLSDEVVD---EMIGKLPKSL---LDVILP-FQLEGVRF 211
+ + + R + L++ + + KL L L V L FQ EGV F
Sbjct: 304 KCFKNYTKFSEPQRISEITANILTNTMCSYTKQHYDKLDHLLGEKLSVELRNFQREGVFF 363
Query: 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP 271
GL++ GR LI DEMGLGKTLQA+A+ A + +VVCP+ +R W ++ RWL +
Sbjct: 364 GLKKNGRVLIGDEMGLGKTLQALALMAFYKDDWPFIVVCPSSIRFQWKDQALRWLSHLIR 423
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKR 329
+ H+ +N + ++++ISY ++ + K + + +I DESH+++ SKR
Sbjct: 424 EE-HICVV-KNGKTDIPSNTKMIIISYELITKNDK--YQDKYKSIICDESHYLKNSLSKR 479
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
T R VLLSGTP+L++P +++ QI+ + P ++F YC
Sbjct: 480 TK------VITPIIKNAKRCVLLSGTPALNKPSELYEQISSIMPNFFNY--HEFCDRYC- 530
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXX--- 446
K Y ++ ++ EEL++ L T+MIRRLK+ +L +
Sbjct: 531 FKDKNLYTKKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPVEIPQK 588
Query: 447 XXSEIVS------AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500
SEI++ +K + + +N K D D++ + L KI+ G A
Sbjct: 589 ELSEILNYYKKLESKKNINFHDIDNIHLSNWSNSKSEDGDDENLSISHLFKIT----GYA 644
Query: 501 KLSGFREWLS 510
K+ +E++S
Sbjct: 645 KVKAIKEYIS 654
Score = 324 (119.1 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 116/431 (26%), Positives = 201/431 (46%)
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R VLLSGTP+L++P +++ QI+ + P ++F YC K Y ++ ++
Sbjct: 492 RCVLLSGTPALNKPSELYEQISSIMPNFFNY--HEFCDRYC-FKDKNLYTKKI--EYVGC 546
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXX---XXSEIVSA-KAAVGVIND 463
EEL++ L T+MIRRLK+ +L + SEI++ K N
Sbjct: 547 KHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPVEIPQKELSEILNYYKKLESKKNI 606
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGA 521
+ D N S+ + G L IS ++ G AK+ +E++S
Sbjct: 607 NFHDIDNIHLSNWSNSKSEDGDDENLS-ISHLFKITGYAKVKAIKEYISY---------L 656
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
D D+ K ++F HH V+D V+ F+ E+ ++R+DG T R+ + +FQ +
Sbjct: 657 IDADI-----KFLLFCHHKLVMDEVETFLKEQKCSYIRVDGLTPMEKREIYIKNFQNDDN 711
Query: 582 VKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAK 640
VK L+ ++A VVF EL P ++QAEDRAHR G VNI+ A+
Sbjct: 712 VKIALLSITACGMGLNLTAANTVVFGELFWVPGQIIQAEDRAHRIGTAHDVVNIHYLIAQ 771
Query: 641 DTTDESHWQNLNKSLRCVSSATNGKYDAL--QEIAVEGVSYLEMSDKTDRG--SEDLTLD 696
+T DE W+ +N+ +++A NG D+L +E+ +++++ T++ + +T
Sbjct: 772 NTIDEIVWKIINRKWNTLTTALNGIEDSLNVKEVNKFDKFMVDLTNDTNKSYPTSLVTTP 831
Query: 697 QVA--SSDQ--FQELMKVPESSEASDFRAINT-NDEITAKMNDKLLEESKTDHSPTETDD 751
+V SS+ F ++ + DF N N+ + N+ + + S D SP +D
Sbjct: 832 KVRRKSSEHGTFHNSSPKKKNRDIRDFFTANKCNESVEKSWNNNINKRSYHD-SPM--ND 888
Query: 752 HHNNVSQYTGR 762
N ++ +
Sbjct: 889 SPNTTLKFLSK 899
>DICTYBASE|DDB_G0274965 [details] [associations]
symbol:DDB_G0274965 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 dictyBase:DDB_G0274965 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0016568 EMBL:AAFI02000012
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K14440 RefSeq:XP_644229.1
EnsemblProtists:DDB0233438 GeneID:8619658 KEGG:ddi:DDB_G0274965
InParanoid:Q554U4 Uniprot:Q554U4
Length = 1400
Score = 342 (125.4 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 121/462 (26%), Positives = 208/462 (45%)
Query: 293 VVVISYTMLHRL-RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVL 351
V + SY ++ RL K ++ + + +I DESH+++ SE + +L
Sbjct: 802 VNICSYDLVGRLLEKELLPRAFKAIICDESHYMK----NSEAKRTKNVLKLVHTAKIRIL 857
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV-KTVQGYQGQLFQDFSKGVRL 410
L+GTP+LSRP ++F Q+ L + DF YC+ K + G+ D++ L
Sbjct: 858 LTGTPALSRPVELFPQMLALGASIYPTLN-DFGLRYCNAFKGIYGW------DYTGNSHL 910
Query: 411 EELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSEIVSAKAAVGVINDSEKDATN 470
+EL VL++ VMIRRLK +L + V + V + S K +
Sbjct: 911 QELYVLIRG-VMIRRLKNDVLKDLPPKVRIKVVVDTPTPKDVQNEVG-SVFSKSNKLSMI 968
Query: 471 DKTPKDSDEHD--DSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
+ K + + G + KI Y E G AKL +++ I++
Sbjct: 969 QQFQKQPNANSIGGGGGGGQKDKIMHLYVETGRAKLKASSDYI--------------INL 1014
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXX 586
++ K ++FAHH +++G++E I G G++RIDG+T RQ+ V FQ + K
Sbjct: 1015 IKKNEKFLVFAHHADIMNGLEEAIKSTGAGYIRIDGSTPAVQRQAFVTKFQNNASCKVAL 1074
Query: 587 XXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
L +++ VVF+EL +P ++ QAEDR HR GQT I+ K+T D+
Sbjct: 1075 LSITAAGTGLTLTASNLVVFVELYWTPGVLRQAEDRIHRIGQTKTCYIHYLIGKNTLDDR 1134
Query: 647 HWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD-QVASSDQ-- 703
W + L + +G+ + L ++ + +K G +D T+D + +D+
Sbjct: 1135 IWPTICNKLEVLGETLDGQEEVLHTQNLDMRGRVNTINKYFIG-KDGTIDLEKEDTDELV 1193
Query: 704 FQELMKVPESSEASDFRAI--NTNDEITAKMNDKLLEESKTD 743
F + P + F+ + +DE + + K +SK D
Sbjct: 1194 FSIIGDDPSVLQQQQFQQQLDDEDDEEESSNSKKSKNKSKKD 1235
Score = 301 (111.0 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 80/246 (32%), Positives = 133/246 (54%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250
++P L +LPFQ++ + F ++ G+CLI DEMGLGKT+QA+AI++ + S +L++C
Sbjct: 708 RIPVELFSTLLPFQMKSLSFCTQQLSGKCLIGDEMGLGKTIQALAISSYYRSEWPLLIIC 767
Query: 251 PAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKSMI 309
P+ LRLSW++E+E+W P DI+++ + + V + SY ++ RL K ++
Sbjct: 768 PSSLRLSWSKEVEKWFP---SVDINVIMTGEDKANAM-----VNICSYDLVGRLLEKELL 819
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
+ + +I DESH+++ SE + +LL+GTP+LSRP ++F Q+
Sbjct: 820 PRAFKAIICDESHYMK----NSEAKRTKNVLKLVHTAKIRILLTGTPALSRPVELFPQML 875
Query: 370 MLWPGLLGKAKYDFAKTYCDV-KTVQG--YQGQL-FQDFS---KGVRLEEL-NVLLKQTV 421
L + DF YC+ K + G Y G Q+ +GV + L N +LK
Sbjct: 876 ALGASIYPTLN-DFGLRYCNAFKGIYGWDYTGNSHLQELYVLIRGVMIRRLKNDVLKDLP 934
Query: 422 MIRRLK 427
R+K
Sbjct: 935 PKVRIK 940
Score = 54 (24.1 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 29/155 (18%), Positives = 59/155 (38%)
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ-EIAVEGVSYLEMSD 684
RG+ + +N Y F KD T + ++ ++ + + Q + ++ E S
Sbjct: 1165 RGRVNTINKY-FIGKDGTIDLEKEDTDELVFSIIGDDPSVLQQQQFQQQLDDEDDEEESS 1223
Query: 685 KTDRGSEDLTLDQVASSDQFQELM-----KVPESSEASDFRAINTN--DEITAKMNDKLL 737
+ + DQ +Q L P + FR IN N D + K N+ +
Sbjct: 1224 NSKKSKNKSKKDQQQEKKNYQSLQFSQPPPPPIFKNQTTFRNINPNFKDYLNNKNNNNIN 1283
Query: 738 EESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGT 772
+ +++ +++ N+ + + H Y GT
Sbjct: 1284 NNNNNNNNNNNNNNNKNSNNYRNLKFHQYQNNFGT 1318
Score = 50 (22.7 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 723 NTNDEITAKMNDKLLEESKTD-HSPTETDDHHNNVSQY 759
N N+ I N+ + +K + ++P D++ N ++QY
Sbjct: 1340 NINNNINNNNNNNNINNNKNNTNNPNNNDNNPNVITQY 1377
Score = 44 (20.5 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 723 NTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
NTN+ N ++ + + + +++ NN+SQY
Sbjct: 1360 NTNNPNNNDNNPNVITQYFQSNQGYDNNNNFNNISQY 1396
Score = 41 (19.5 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 159 NVVEKLSHSIDTGRWNPCRPEHLSDEVV 186
N++ + H++ +P +P+ S ++
Sbjct: 305 NIINQQQHNVKNNNISPSKPQSKSSPIL 332
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 202 (76.2 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 64/237 (27%), Positives = 107/237 (45%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAI 234
PE E+ + + K + + P+QL+GV++ ++ C++ DEMGLGKT Q I
Sbjct: 13 PEKDKSELTENDLKKWGLGAIH-LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTI 71
Query: 235 AIAACFISA----GSILVVCPAILRLSWAEELERWLP----FCLPADIHLVFGHRNNPVH 286
++ A + G LV+CP + +W +ELER+ P C D + N
Sbjct: 72 SLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKS 131
Query: 287 LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXX 346
RF V++ +Y M + + + W +L+VDE+H R E
Sbjct: 132 DPRF-HVLLTTYEMCLKDARYLKSWKWKILVVDEAH------RLKNQESLLHQTLKEFTV 184
Query: 347 XRIVLLSGTPSLSRPYDIFHQINMLWPGL-LGKAKYDFAKTYCDVKTVQGYQGQLFQ 402
VLL+GTP + +++ + + P + L +A DF Y D++T +L Q
Sbjct: 185 GFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEAVEDFVNAYADIQTEPALVDELHQ 241
Score = 178 (67.7 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 70/296 (23%), Positives = 128/296 (43%)
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXXX 592
+++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F + +V
Sbjct: 355 VLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFS-TKDVFIFLLSTKAG 413
Query: 593 XXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
++ ++A V+F++ +P LQA RAHR GQT V + +DT +E +
Sbjct: 414 GVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAV 473
Query: 653 KSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
LR + G++ L + A S L++S+ G + L L SS Q +L +
Sbjct: 474 SKLRLTDTVIEEGRFSLLDQ-AQSAASGLQLSEILKFGVDKL-LSSEESSVQDVDLQLIL 531
Query: 712 ESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPG 771
S + DE AK+N+ EE E + N++ + G+ YS P
Sbjct: 532 GQSRDGQW----LTDEEHAKLNESNEEED-------EDMEGQNHMYYFEGKD--YSKDPS 578
Query: 772 T-DSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKL 826
D + L + E+++ E L+ G + IN RP+ +L
Sbjct: 579 AEDEKTFELLLEKQFAEMEDAEKEGRALRNKAGVSLS-GPLINPARKKRPLTEAEL 633
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 396 YQGQLFQDFSKGVRLEELNVLLK 418
Y+G ++ VR EE N+ +K
Sbjct: 374 YRGYSYERLDGSVRGEERNLAIK 396
>DICTYBASE|DDB_G0281559 [details] [associations]
symbol:DDB_G0281559 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010003 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
PROSITE:PS51467 SMART:SM00490 dictyBase:DDB_G0281559 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016568
EMBL:AAFI02000042 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 RefSeq:XP_640643.1 ProteinModelPortal:Q54TE8
EnsemblProtists:DDB0214904 GeneID:8623254 KEGG:ddi:DDB_G0281559
InParanoid:Q54TE8 OMA:ENTIRRH Uniprot:Q54TE8
Length = 1021
Score = 335 (123.0 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 82/240 (34%), Positives = 140/240 (58%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L +LPFQ++G+ FG+ +GGRCLIAD+MGLGKT+Q I+IA + +L++ P+ LRL
Sbjct: 341 LPSTLLPFQIKGIEFGIEKGGRCLIADDMGLGKTIQGISIAYHYKEEWPLLIIAPSSLRL 400
Query: 257 SWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
WA+++E++ P + + +I+LV N L + +ISY ++ + + ++++++ +
Sbjct: 401 VWADQIEKFFPNKIQSSEINLVM---NGKCGLNGM--INIISYDLVTKKKDQILQKNFKV 455
Query: 316 LIVDESHHVRC--SKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I DE H+++ S+R+ E R +LLSGTP+LSRP ++F QI+ + P
Sbjct: 456 VIADECHYIKQFNSQRSKSTAEVLKRSK------RCILLSGTPALSRPMELFIQISCINP 509
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ Y F YC +Q + + S ++ELN+ L T MIRRLK ++ +
Sbjct: 510 YFMQWRDYAFR--YC-----AAFQEKFCFNTSGCSNMKELNLYLN-TFMIRRLKDDVMTE 561
Score = 309 (113.8 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 107/417 (25%), Positives = 184/417 (44%)
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R +LLSGTP+LSRP ++F QI+ + P + Y F YC +Q + + S
Sbjct: 484 RCILLSGTPALSRPMELFIQISCINPYFMQWRDYAFR--YC-----AAFQEKFCFNTSGC 536
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSEIVSAKAAVGVINDSEK- 466
++ELN+ L T MIRRLK ++ + +++ + + IN K
Sbjct: 537 SNMKELNLYLN-TFMIRRLKDDVMTELPEKRRERILVKLDKTKLKEVQKTLVEINQHRKV 595
Query: 467 --DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
D D +++ G +L ++ G+ KL+ ++L V A
Sbjct: 596 YLDPNTDMKTSFKNKNSRQGLFFKL----LRDTGLYKLTAVTQFLKEKLVDA-------- 643
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEF-----ISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
P K +IFAHH +V++G+ + +K + F++IDG+T ++R V+ FQ
Sbjct: 644 ---PIDQKFLIFAHHKEVINGIVHMLGKIKVDKKKLEFIKIDGSTPAQNRNDYVNDFQND 700
Query: 580 NEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ L ++A V+F EL +P ++ QAEDRAHR GQTS+V + A
Sbjct: 701 PNCRVAVLSITAAGTGLTLTAATCVIFAELSWTPGVLFQAEDRAHRYGQTSSVLVQYLIA 760
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
T DE W +L +S + + D Q + E LE +++ D + +V
Sbjct: 761 LGTVDEMIW-SLVESKKTLLGRVLDDEDG-QSLNAEDAGQLEHGEQSVDDFIDSLIKKVE 818
Query: 700 SSDQFQELMKVPESSEASDFRAINTN-DEITAKMNDKLLEESKTDHSPTETDDHHNN 755
DQ ++ K + + + + + + + S D+S + DD ++N
Sbjct: 819 EQDQIRK-KKYDDKQRRKEEKLLKLQLKNGSGGGGGEEDDNSDLDNSDDDEDDEYDN 874
Score = 39 (18.8 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 449 SEIVSAKAAVGVINDSEKDATNDKTPKDS 477
S + S+K+ V +KD TN P S
Sbjct: 923 STVASSKSTT-VKKTKDKDTTNPTKPSPS 950
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 217 (81.4 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 57/239 (23%), Positives = 110/239 (46%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++ +IF KVLD +++F++ G ++R+DG T DRQ F + +
Sbjct: 1263 HRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSR 1322
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+F + +P++ Q +DR HR GQT V+IY F ++ T + + +
Sbjct: 1323 SGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKK 1382
Query: 651 LNKSLRCVSSATN-GKY--DALQEIAVEGVSYLEMSDKTDRGSEDLTLD-QVASSDQFQE 706
N+ + + G + D +++V + E+ + G + L D VA+ D Q
Sbjct: 1383 ANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPENASGGDKPLIADADVAAKDPRQL 1442
Query: 707 LMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHL 765
+ ++ + D +A N ND +ES + E +++H + +Y G H+
Sbjct: 1443 ERLLAQAEDEDDVKAANLAMREVEIDNDDF-DESTEKKAANEEEENHAELDEYEGTAHV 1500
Score = 122 (48.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 44/174 (25%), Positives = 78/174 (44%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A G L+V P + L+W E +R+ P +
Sbjct: 718 ILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYY 777
Query: 276 LVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
R P V ++SY ++ + + S + W +++DE+H+++ + T
Sbjct: 778 GSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTR- 836
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLL--GKAKYDFA 384
R +LL+GTP + +++ + L P + GK FA
Sbjct: 837 -----WQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFA 885
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 180 (68.4 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 64/242 (26%), Positives = 113/242 (46%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAI 253
P+QLEGV F + G C++ DEMGLGKT Q IA+ A G L++CP
Sbjct: 50 PYQLEGVNWLAQCFHYQNG--CILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPLS 107
Query: 254 LRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPR------VVVISYTMLHRLRK 306
+ +W EE+ER C P + + G + HL + + V++ +Y + +
Sbjct: 108 VLSNWKEEMER----CAPGLCCVTYAGDKEERAHLQQDLKQESGFHVLLTTYEICLKDAS 163
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFH 366
+ W++L+VDE+H ++ ++ R+ LL+GTP + +++
Sbjct: 164 FLKSFPWSVLVVDEAHRLK-----NQNSLLHKSLSEFSVAFRL-LLTGTPIQNSLQELYS 217
Query: 367 QINMLWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLF---QDFS-KGVRLEELNVLLKQTV 421
++ + P L K + DF + Y D++ +L+ Q F + V+ E L K+T
Sbjct: 218 LLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEVAAELPKKTE 277
Query: 422 MI 423
++
Sbjct: 278 VV 279
Score = 144 (55.7 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 39/177 (22%), Positives = 85/177 (48%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ +++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 367 KGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFIFLLS 425
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F++ +P LQA RAHR GQ +V + +DT +E
Sbjct: 426 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIIC 485
Query: 649 QNLNKSLRCVSSATNGKYDAL--QEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ 703
+ L+ ++ G L Q A E + L++S+ G + L + ++ D+
Sbjct: 486 RKAASKLKLTNTIIEGGRFTLGAQRPAAE--ADLQLSEILKFGLDKLLSSEGSTMDE 540
Score = 55 (24.4 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 23/82 (28%), Positives = 33/82 (40%)
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
V S Q + ++ PE E D R E AK +L+EE K E H ++
Sbjct: 630 VEGSTQRKRILS-PE--ELEDRR--KKRQEAAAKRK-RLIEEKKRKKEEAE---HKKKMA 680
Query: 758 QYTGRIHLYSCVPGTDSRPRPL 779
+ + C+P DS P L
Sbjct: 681 WWESNGYQSFCLPSEDSEPEDL 702
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 187 (70.9 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 52/164 (31%), Positives = 78/164 (47%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
++ +IF +LD V+ + K + F+R+DG+T PRDRQS V F +
Sbjct: 1687 HRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLL 1746
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
L+ + A V+F+E +P LQA DRAHR GQ VN+Y KDT +E
Sbjct: 1747 TTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKI 1806
Query: 648 WQNLNK-SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGS 690
L K + S+ N + LQ + + L++ D D G+
Sbjct: 1807 -MGLQKFKMNIASTIVNQQNAGLQSMDTNQL--LDLFDVDDTGN 1847
Score = 150 (57.9 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 68/263 (25%), Positives = 118/263 (44%)
Query: 193 LPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC--------FI 241
LP ++ + +Q EGV F + ++ D+MGLGKTLQ I I + F
Sbjct: 1294 LPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREENFK 1353
Query: 242 SAGSI-------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT-RFPR- 292
GS LV+CP L W +E+ ++ PF + + G + + L + P
Sbjct: 1354 ETGSAEYRKLPSLVICPPSLIGHWEQEINQYAPFM---KVLVYAGSPSIRIPLRGQIPDA 1410
Query: 293 -VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR-CSKRTSEPEEXXXXXXXXXXXXRIV 350
VVV SY + +S+ + D+ ++DE H ++ S + S+ + R++
Sbjct: 1411 DVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEH------RLI 1464
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
L SGTP + +++ + L PG LG K K + + + + + + +
Sbjct: 1465 L-SGTPIQNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAM 1523
Query: 411 EELNVLLKQTV--MIRRLKQHLL 431
E L+ KQ + M+RRLK+ +L
Sbjct: 1524 ESLH---KQVLPFMLRRLKEDVL 1543
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 170 (64.9 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 37/128 (28%), Positives = 67/128 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKXXXX 587
R +++++F+ ++ LD ++++ K I + R DG + +RQSA+ SF N E+
Sbjct: 886 RGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLL 945
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA V+ L+ +P +QA RAHR GQ V +++ +D+ +E
Sbjct: 946 STRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKI 1005
Query: 648 WQNLNKSL 655
QN K L
Sbjct: 1006 IQNAQKKL 1013
Score = 164 (62.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 64/243 (26%), Positives = 112/243 (46%)
Query: 201 ILPFQLEGVRFGLRRGGR---CLIADEMGLGKTLQAIA-IAACFI--SAGSILVVCPAIL 254
++P+QL+G+ + R C++ADEMGLGKT+Q I+ I+ F +LV+ P
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHAT 615
Query: 255 RLSWAEELERWLPFC-------------LPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+W EL++W PF L D L+ ++ +P H++ V+VIS + +
Sbjct: 616 VANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLI--NQKDPKHVST--HVLVISASNV 671
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRP 361
R + + W +LIVDE ++ ++ ++ LL+GTP +
Sbjct: 672 EREISLLRKFQWKVLIVDEGQRLK-----NDQSSLFYYLSSVKSDFKL-LLTGTPLQNNV 725
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL-NVLLKQT 420
++F+ + L P + A+ + + D + V L F + V+ E L N K
Sbjct: 726 RELFNLLQFLNPMKINAAELEKRYSIIDTEKVTELHQILKPFFLRRVKSEVLDNFPTKVE 785
Query: 421 VMI 423
V+I
Sbjct: 786 VII 788
Score = 39 (18.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 722 INTNDEITAKMNDKLLEESKTDHSPTET-DDHHNN 755
+ T D + K+ ++ DH E+ D +HN+
Sbjct: 995 LTTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNS 1029
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 170 (64.9 bits), Expect = 8.4e-20, Sum P(3) = 8.4e-20
Identities = 64/237 (27%), Positives = 111/237 (46%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAILR 255
+QLEGV + R + G C++ DEMGLGKT Q IA+ A G L++CP +
Sbjct: 51 YQLEGVNWLARCFHCQNG-CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVL 109
Query: 256 LSWAEELERWLP--FCL--PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+W EE+ER+ P C+ D + + +RF V++ +Y + + +
Sbjct: 110 SNWTEEMERFAPGLSCVMYAGDKEERARLQQDLKQESRF-HVLLTTYEICLKDSSFLKSF 168
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W++L+VDE+H R + S + +LL+GTP + +++ ++ +
Sbjct: 169 PWSVLVVDEAH--RLKNQNSLLHKTLLEFSVVFS----LLLTGTPIQNSLQELYSLLSFV 222
Query: 372 WPGLLGKAKY-DFAKTYCDVKTVQGYQGQL---FQDFS-KGVRLEELNVLLKQTVMI 423
P L K + DF + Y D++ +L Q F + V+ E L K+T ++
Sbjct: 223 EPDLFPKEQVGDFVQRYQDIEKESDSASELHKLLQPFLLRRVKAEVATELPKKTEVV 279
Score = 156 (60.0 bits), Expect = 8.4e-20, Sum P(3) = 8.4e-20
Identities = 39/175 (22%), Positives = 84/175 (48%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
R +++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F V
Sbjct: 363 RGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPVFVFLLS 421
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F++ +P LQA RAHR GQ +V + +DT +E +
Sbjct: 422 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 481
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ 703
+ L+ ++ G + L + L++S+ G + L Q ++ D+
Sbjct: 482 RKAASKLQLTNAIIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLSSQGSTMDE 536
Score = 49 (22.3 bits), Expect = 8.4e-20, Sum P(3) = 8.4e-20
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 701 SDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYT 760
S++ + ++ E D R E AK +L+EE K E H + +
Sbjct: 626 SEESTKRKRILSPEELEDRR--KKRQEAAAKRK-RLMEEKKRKKEKVE---HEKKMVWWE 679
Query: 761 GRIHLYSCVPGTDSRPRPL 779
+ C+P +S P L
Sbjct: 680 SNNYQSFCLPSEESEPEDL 698
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 196 (74.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 64/261 (24%), Positives = 127/261 (48%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLRRGG-RCLIADEMGLGKTLQAIAIAA 238
++E + +I K P ++ + P+QLEG+ + L R ++ADEMGLGKTLQ I++
Sbjct: 303 ANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLL- 361
Query: 239 CFISAGS-----ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---- 289
C++ +++CP +W EE+++W C P +G+++ L R
Sbjct: 362 CYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW---CTPMKAFKYYGNKDQRKELNRNLLH 418
Query: 290 --FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
F V++ +Y ++ + + ++ + DW L++DE+H ++ +E
Sbjct: 419 SDFD-VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIK-----NEKSVLSSSVRFLRSEN 472
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSK 406
R+ L++GTP + +++ +N L P + ++ +D + T Q ++
Sbjct: 473 RL-LITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEI------ 525
Query: 407 GVRLEELNVLLKQTVMIRRLK 427
+ +L+ +LK M+RRLK
Sbjct: 526 ---ITQLHTILKP-FMLRRLK 542
Score = 139 (54.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 31/128 (24%), Positives = 66/128 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKXXXXX 588
++++++F+ ++LD + ++ K ++RIDG+T +RQ ++ F N +
Sbjct: 642 NSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLS 701
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+ + +P + +QA DRAHR GQ V +Y F +++ +E
Sbjct: 702 TRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIV 761
Query: 649 QNLNKSLR 656
+ K L+
Sbjct: 762 ERAAKKLK 769
Score = 53 (23.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+S + + ND EK+A+ + T DE D SG+
Sbjct: 848 ISLDGGLNMYNDLEKEASEEST----DEEDSSGS 877
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 461 INDSEKDATNDKTPKDSDE-HDD 482
+ND EK +TN T D++ H+D
Sbjct: 167 MNDKEKGSTNMSTINDNNNNHND 189
Score = 43 (20.2 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 876 AEWKKVRICSGSRKKEKEYTQGW 898
++WK + G K+K GW
Sbjct: 935 SKWKVMNTACGRTNKKKMVLHGW 957
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 196 (74.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 64/261 (24%), Positives = 127/261 (48%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLRRGG-RCLIADEMGLGKTLQAIAIAA 238
++E + +I K P ++ + P+QLEG+ + L R ++ADEMGLGKTLQ I++
Sbjct: 303 ANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLL- 361
Query: 239 CFISAGS-----ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---- 289
C++ +++CP +W EE+++W C P +G+++ L R
Sbjct: 362 CYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW---CTPMKAFKYYGNKDQRKELNRNLLH 418
Query: 290 --FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
F V++ +Y ++ + + ++ + DW L++DE+H ++ +E
Sbjct: 419 SDFD-VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIK-----NEKSVLSSSVRFLRSEN 472
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSK 406
R+ L++GTP + +++ +N L P + ++ +D + T Q ++
Sbjct: 473 RL-LITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEI------ 525
Query: 407 GVRLEELNVLLKQTVMIRRLK 427
+ +L+ +LK M+RRLK
Sbjct: 526 ---ITQLHTILKP-FMLRRLK 542
Score = 139 (54.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 31/128 (24%), Positives = 66/128 (51%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKXXXXX 588
++++++F+ ++LD + ++ K ++RIDG+T +RQ ++ F N +
Sbjct: 642 NSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLS 701
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+ + +P + +QA DRAHR GQ V +Y F +++ +E
Sbjct: 702 TRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIV 761
Query: 649 QNLNKSLR 656
+ K L+
Sbjct: 762 ERAAKKLK 769
Score = 53 (23.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+S + + ND EK+A+ + T DE D SG+
Sbjct: 848 ISLDGGLNMYNDLEKEASEEST----DEEDSSGS 877
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 461 INDSEKDATNDKTPKDSDE-HDD 482
+ND EK +TN T D++ H+D
Sbjct: 167 MNDKEKGSTNMSTINDNNNNHND 189
Score = 43 (20.2 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 876 AEWKKVRICSGSRKKEKEYTQGW 898
++WK + G K+K GW
Sbjct: 935 SKWKVMNTACGRTNKKKMVLHGW 957
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 185 (70.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 74/324 (22%), Positives = 140/324 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++ +IF K+LD ++ FI+ G ++R+DG+T P +RQ+ + F + ++
Sbjct: 1092 HRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTR 1151
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ A V+F + +P++ QA+DR HR GQT V+IY ++ T +E+ +
Sbjct: 1152 SGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKK 1211
Query: 651 LNKSLRCVSSAT--NGKYDA-----LQEIAV-EGVSYLEMSDKTDRGSEDLTLDQVASSD 702
N+ R + + NG+Y+ L + + G L D+ + S+ D S+
Sbjct: 1212 ANQK-RVLDNLVIQNGEYNTEFFKKLDPMELFSGHKALTTKDEKET-SKHCGADIPLSNA 1269
Query: 703 QFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGR 762
+ +K ++ + +D+ A+ ++ A N + EE E + + +
Sbjct: 1270 DVEAALK--QAEDEADYMALKRVEQEEAVDNQEFTEEPVERPEDDELVNEDDIKADEPAD 1327
Query: 763 IHLYSCVPGTDSRPRPLFESFRPEEL--------DNTEHISGCLKENPGYRHAIQAFINE 814
L + P + L R E D+T+ + + A QA +
Sbjct: 1328 QGLVAAGPAKEEMSL-LHSDIRDERAVITTSSQEDDTDVLDDVKQMAAAAADAGQAISSF 1386
Query: 815 WNALRPIERTKLLGKPLQLPLSVE 838
N LRPI+R + L P+ VE
Sbjct: 1387 ENQLRPIDRYAIRFLELWDPIIVE 1410
Score = 147 (56.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 60/221 (27%), Positives = 107/221 (48%)
Query: 220 LIADEMGLGKTLQAIAIAA---CFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+ IA+ A C G L+V P + L+W E +W P I
Sbjct: 558 ILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCP---AFKIL 614
Query: 276 LVFGH-------RNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
FG R + L F V + +Y ++ + K + W LI+DE+H ++ K
Sbjct: 615 TYFGSAKERKLKRQGWMKLNSF-HVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWK 673
Query: 329 RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
S+ + R +LL+GTP + +++ ++ L P + ++ +F +C
Sbjct: 674 --SQRWQTLLNFNSK----RRILLTGTPLQNDLMELWSLMHFLMPHVF-QSHQEFKDWFC 726
Query: 389 DVKTVQGY-QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ + G +GQ + +K V ++ L+ +L+ ++RRLK+
Sbjct: 727 N--PIAGMVEGQ--EKINKEV-IDRLHNVLRP-FLLRRLKR 761
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 661 ATNGKYDALQE--IAVEGV---SYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSE 715
A KY +L++ +A E S +++ D TD +E+ + SD L ++ +
Sbjct: 1511 AKKAKYKSLKKGSLAAESKHVKSVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGK 1570
Query: 716 ASDFRAINTNDEITAKMNDKLLEES 740
D ++T++E T+K K ++S
Sbjct: 1571 KRDL-IVDTDEEKTSKKKAKKHKKS 1594
Score = 39 (18.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 727 EITAKMNDKLLEESKTDHSPTETDD 751
++T+ ++ KLLE + D P++ D+
Sbjct: 1831 KVTS-LSRKLLESALQDSGPSQPDN 1854
Score = 37 (18.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 351 LLSGTPSLSRPYDI 364
L SG+P L YD+
Sbjct: 202 LESGSPELDEDYDL 215
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 152 (58.6 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ +K+++F++ +++LD +++F+ KG F R+DG+T RQS V F S +
Sbjct: 543 KGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLIS 602
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ SA VV + +PS LQA+DR+ R GQ V ++ + + +E
Sbjct: 603 TKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEE 659
Score = 139 (54.0 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 60/236 (25%), Positives = 107/236 (45%)
Query: 216 GGRCLIADEMGLGKTLQAIAIAA------------CFISA--GSILVVCPAILRLSWAEE 261
GG ++ D+MGLGKT+Q IA A C + + G +L++CP+ + +W E
Sbjct: 159 GG--ILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESE 216
Query: 262 LERWLPFCLPADIHLVFGHRNNPV--HL-TRFPRVVVISYTMLHRLRKSMIEQ-DWALLI 317
RW F + H G + + L R V+V S+ R++ ++ +W ++I
Sbjct: 217 FSRWASFFKVSVYH---GSNRDMILEKLKARGVEVLVTSFDTF-RIQGPVLSGINWEIVI 272
Query: 318 VDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
DE+H ++ +E + RI L +GT ++ ++F+ + PG LG
Sbjct: 273 ADEAHRLK-----NEKSKLYEACLEIKTKKRIGL-TGTVMQNKISELFNLFEWVAPGSLG 326
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSK--GVRLEELNVLLKQTVMIRRLKQHLL 431
++ F Y D G + + F + R + L LL++ M+RR K+ +
Sbjct: 327 TREH-FRDFY-DEPLKLGQRATAPERFVQIADKRKQHLGSLLRK-YMLRRTKEETI 379
Score = 78 (32.5 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 175 PCRPEHLSDEVVDEM-IGKLPKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKT 230
P P LS + E+ I +P S+ +L Q EGV+F L + ++ D+MGLGKT
Sbjct: 114 PYEPLMLSS--IGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKT 171
Query: 231 LQAIAIAA 238
+Q IA A
Sbjct: 172 IQTIAFLA 179
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 180 (68.4 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 70/266 (26%), Positives = 123/266 (46%)
Query: 187 DEMIGKLPKSLLDVIL-PFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI- 241
D+ K P+ L + IL P+QLEG+ + + G ++ADEMGLGKT+Q+IA+ A FI
Sbjct: 207 DDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLA-FIY 265
Query: 242 ---SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------ 292
+ G LV P +W E ++ P + G++ L F +
Sbjct: 266 EMDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTG 325
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
+V+ SY ++ R ++ Q+W LIVDE H ++ E R+ LL
Sbjct: 326 IVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKE-----LKKINTSNRL-LL 379
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR--- 409
+GTP + +++ +N + P + A ++ + D ++ G + +K +
Sbjct: 380 TGTPLQNNLAELWSLLNFIMPDIF--ADFEIFNKWFDFDSLNLGSGSNSEALNKLINDEL 437
Query: 410 ----LEELNVLLKQTVMIRRLKQHLL 431
+ L+ +LK ++RRLK+ +L
Sbjct: 438 QKNLISNLHTILKP-FLLRRLKKVVL 462
Score = 140 (54.3 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 52/216 (24%), Positives = 94/216 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV-KXXXXXX 589
+K++I++ + +LD ++++ RIDG+ R+ + F S +
Sbjct: 620 HKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLST 679
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE---S 646
++ A VV + +P + LQA DR HR GQ S V +Y C +T + +
Sbjct: 680 RAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILT 739
Query: 647 HWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
N R V GK++ L+++A+ S+L K ++ ++T + D QE
Sbjct: 740 RAANKRNLERMVIQM--GKFNNLKKLALNEGSFL----KANKAGVNVT-----NKDLVQE 788
Query: 707 LMKVPESSEAS-DFR--AINTNDEITAKMNDKLLEE 739
L + S E++ F N ++ DK +EE
Sbjct: 789 LSMLLMSDESNIGFENGGQKENKATEGQLTDKEVEE 824
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 173 (66.0 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 41/176 (23%), Positives = 86/176 (48%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ + ++++I+ K++D ++E+++ + +R+DG++ DR+ VH +Q + E+
Sbjct: 1309 VKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIF 1368
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
++ ++A V+F + +P++ QA DRAHR GQT V +Y + T
Sbjct: 1369 VFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTI 1428
Query: 644 DESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEM-SDKTDRGSEDLTLDQV 698
+E + + GK QE ++ + E S+ T GS+ ++ D +
Sbjct: 1429 EERMRDRAKQKEQVQQVVMEGK---TQEKNIKTIEVGENDSEVTREGSKSISQDGI 1481
Score = 152 (58.6 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 68/255 (26%), Positives = 123/255 (48%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
PK L + +QL+G+ + +G ++ADEMGLGKT+Q+I++ A G
Sbjct: 699 PKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPF 758
Query: 247 LVVCPAILRLSWAEELERWLP-F-CLP----ADIHLV---FGHRNNPVHLTRFP-RVVVI 296
LVV PA +W E+ ++LP F LP A+ V F R N + P V+V
Sbjct: 759 LVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVT 818
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP 356
SY M+ + + W +I+DE+ ++ S ++S + +LL+GTP
Sbjct: 819 SYQMVVTDANYLQKMKWQYMILDEAQAIK-SSQSSRWKNLLSFHCRNR-----LLLTGTP 872
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNV 415
+ +++ ++ + P L +F + + D+++ +L Q +L L++
Sbjct: 873 IQNSMQELWALLHFIMPSLFDSHD-EFNEWFSKDIESHAEANTKLNQQ-----QLRRLHM 926
Query: 416 LLKQTVMIRRLKQHL 430
+LK M+RR+K+++
Sbjct: 927 ILKP-FMLRRVKKNV 940
Score = 42 (19.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSG 484
ND+E + ND D+D+ +++G
Sbjct: 239 NDNENENDNDS---DNDDEEENG 258
Score = 38 (18.4 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
N+++ D+ ND ++ +E ++
Sbjct: 243 NENDNDSDNDDEEENGEEDEE 263
Score = 38 (18.4 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND++ + ND + +E+D+
Sbjct: 227 NDNDNENNNDNDNDNENENDN 247
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 462 NDSEKDATNDKTPKDSDEHD 481
ND+E + ND ++ +++D
Sbjct: 229 NDNENNNDNDNDNENENDND 248
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 400 LFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
L ++FS + + ++ + ++ +R+L + LLV+
Sbjct: 1278 LNKNFSSNISMPSMDRFITESAKLRKLDE-LLVK 1310
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 173 (66.0 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 63/239 (26%), Positives = 113/239 (47%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAI 253
P+QL+GV F + G C++ DEMGLGKT Q IA+ A G L++CP
Sbjct: 50 PYQLQGVNWLAQCFHCQNG--CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 107
Query: 254 LRLSWAEELERWLP--FCLP--ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
+ +W EE+ER+ P C+ D + + +RF V++ +Y + + +
Sbjct: 108 VLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRF-HVLLTTYEICLKDASFLK 166
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
W++L+VDE+H R ++S + +LL+GTP + +++ ++
Sbjct: 167 SFPWSVLVVDEAH--RLKNQSSLLHKTLSEFSVVFS----LLLTGTPIQNSLQELYSLLS 220
Query: 370 MLWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLF---QDFS-KGVRLEELNVLLKQTVMI 423
+ P L K + DF + Y D++ +L+ Q F + V+ E L ++T ++
Sbjct: 221 FVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVV 279
Score = 146 (56.5 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 38/174 (21%), Positives = 83/174 (47%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ +++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 364 KGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFTFLLS 422
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P LQA RAHR GQ +V + +DT +E +
Sbjct: 423 TRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 482
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+ L+ ++ G + L + L++S+ G LD++ SS+
Sbjct: 483 RKAASKLQLTNTIIEGGHFTLGAQKPAADADLQLSEILKFG-----LDKLLSSE 531
Score = 45 (20.9 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 711 PESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVP 770
PE E D R E AK +LLEE + E +H ++ + + C+P
Sbjct: 639 PE--ELEDRR--KRRQEAAAKRK-RLLEEKR---KKKEEAEHKKKMAWWESNNYQSFCLP 690
Query: 771 GTDSRP 776
+S P
Sbjct: 691 SEESEP 696
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 170 (64.9 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 64/238 (26%), Positives = 112/238 (47%)
Query: 204 FQLEGV-----RFGLRRGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAIL 254
+QLEGV RF + G C++ DEMGLGKT Q IA+ A G L++CP +
Sbjct: 49 YQLEGVNWLAQRFHCQNG--CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSV 106
Query: 255 RLSWAEELERWLP--FCLP--ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
+W EE++R+ P C+ D + + +RF V++ +Y + + +
Sbjct: 107 LSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRF-HVLLTTYEICLKDASFLKS 165
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINM 370
W++L+VDE+H R ++S + +LL+GTP + +++ ++
Sbjct: 166 FPWSVLVVDEAH--RLKNQSSLLHKTLSEFSVVFS----LLLTGTPIQNSLQELYSLLSF 219
Query: 371 LWPGLLGKAKY-DFAKTYCDVKTVQGYQGQL---FQDFS-KGVRLEELNVLLKQTVMI 423
+ P L K + DF + Y D++ +L Q F + V+ E L K+T ++
Sbjct: 220 VEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVV 277
Score = 146 (56.5 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 36/173 (20%), Positives = 82/173 (47%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 364 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFVFLLSTR 422
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ ++A V+F++ +P LQA RAHR GQ +V + +DT +E ++
Sbjct: 423 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 482
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ 703
L+ + G + L + L++S+ G + L + ++ D+
Sbjct: 483 AASKLQLTNMIIEGGHFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDE 535
Score = 48 (22.0 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 727 EITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPL 779
E AK +L+EE K E H ++ + + C+P +S P L
Sbjct: 649 EAAAKRR-RLIEEKKRQKEEAE---HKKKMAWWESNNYQSFCLPSEESEPEDL 697
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 161 (61.7 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 57/241 (23%), Positives = 107/241 (44%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKG-----IGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXX 586
K ++F ++LD ++EFIS K + ++R+DG T + RQS V F +
Sbjct: 669 KALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFN-NESFDVFL 727
Query: 587 XXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
++ + A ++ + +PS +QA +RA R GQ V+IY + +E
Sbjct: 728 LTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEK 787
Query: 647 --HWQNLNKSL--RCVSSATNGKYDALQEI-------AVEGVSYLEMSDKTDRGSEDLTL 695
H Q + L R ++ ++ + E+ G S E++++ + +E+L
Sbjct: 788 IYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSLGGENGYSTEELNEEVQKHTENLKN 847
Query: 696 DQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNN 755
+ SD F++L+ + S+ F E + +D+L+E S ET H++
Sbjct: 848 SKSEESDDFEQLVNLSGVSKLESFYNGKEKKENSKTEDDRLIEGLLGGESNLETVMSHDS 907
Query: 756 V 756
V
Sbjct: 908 V 908
Score = 131 (51.2 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 38/110 (34%), Positives = 56/110 (50%)
Query: 167 SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLRR---GGRCLI 221
S D W P ++ D ++ K+P + ++ +Q V+ + L + GG +I
Sbjct: 265 SSDLPEWRRPHP-NIPDAKLNSQF-KIPGEIYSLLFNYQKTCVQWLYELYQQNCGG--II 320
Query: 222 ADEMGLGKTLQAIA-IAACFISA---GSILVVCPAILRLSWAEELERWLP 267
DEMGLGKT+Q IA IAA S G +L+VCPA + W E + W P
Sbjct: 321 GDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPATVMKQWCNEFQHWWP 370
Score = 74 (31.1 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
+++ +Y L +++ W ++DE H +R P+ ++L
Sbjct: 443 ILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIR------NPDSEISLTCKKLKTHNRIIL 496
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLG 377
SGTP + +++ + ++PG LG
Sbjct: 497 SGTPIQNNLTELWSLFDFIFPGKLG 521
Score = 39 (18.8 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 449 SEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
+++ + A +G I S+K+A+ + ++ D+
Sbjct: 972 NKLTGSAAILGNITKSQKEASKEARQENYDD 1002
Score = 37 (18.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 488 RLGK-ISYQELGIAKLSGFREWLSIHPVIAES 518
RL K + + G + S EW HP I ++
Sbjct: 250 RLKKWVKQRSCGSQRSSDLPEWRRPHPNIPDA 281
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 164 (62.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 66/239 (27%), Positives = 115/239 (48%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 146 YQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 205
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPR---VVVISYTMLHRLRKSMIE 310
+W E +RW+P L A + L+ G+++ R P V V SY M+ R KS+ +
Sbjct: 206 NWMNEFKRWVP-TLKA-VCLI-GNKDERAAFIRDVMMPGEWDVCVTSYEMVIR-EKSVFK 261
Query: 311 Q-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
+ +W L++DE+H ++ +E + R+ LL+GTP + ++++ +N
Sbjct: 262 KFNWRYLVIDEAHRIK-----NEKSKLSEIAREFKTTNRL-LLTGTPLQNNLHELWSLLN 315
Query: 370 MLWPGLLGKAK-YD-FAKTYC--DVKTVQGYQGQLFQDFSKGVRLE-ELNVLLKQTVMI 423
L P + A +D + T C D K V+ L + ++ E E ++ K+ V I
Sbjct: 316 FLLPDVFNSASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKI 374
Score = 153 (58.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 35/132 (26%), Positives = 65/132 (49%)
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXX 585
V + ++++IF+ +VLD ++++ +G + R+DGNT R+ A+ +F N K
Sbjct: 457 VQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKFI 516
Query: 586 XXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P + LQA DRAHR GQ V ++ +T +
Sbjct: 517 FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVE 576
Query: 645 ESHWQNLNKSLR 656
E + LR
Sbjct: 577 ERIVERAEMKLR 588
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 173 (66.0 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 63/239 (26%), Positives = 113/239 (47%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAI 253
P+QL+GV F + G C++ DEMGLGKT Q IA+ A G L++CP
Sbjct: 50 PYQLQGVNWLAQCFHCQNG--CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 107
Query: 254 LRLSWAEELERWLP--FCLP--ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
+ +W EE+ER+ P C+ D + + +RF V++ +Y + + +
Sbjct: 108 VLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRF-HVLLTTYEICLKDASFLK 166
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
W++L+VDE+H R ++S + +LL+GTP + +++ ++
Sbjct: 167 SFPWSVLVVDEAH--RLKNQSSLLHKTLSEFSVVFS----LLLTGTPIQNSLQELYSLLS 220
Query: 370 MLWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLF---QDFS-KGVRLEELNVLLKQTVMI 423
+ P L K + DF + Y D++ +L+ Q F + V+ E L ++T ++
Sbjct: 221 FVEPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVV 279
Score = 144 (55.7 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 38/174 (21%), Positives = 83/174 (47%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ +++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 364 KGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF--GQQPIFTFLS 421
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P LQA RAHR GQ +V + +DT +E +
Sbjct: 422 TRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 481
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+ L+ ++ G + L + L++S+ G LD++ SS+
Sbjct: 482 RKAASKLQLTNTIIEGGHFTLGAQKPAADADLQLSEILKFG-----LDKLLSSE 530
Score = 45 (20.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 711 PESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVP 770
PE E D R E AK +LLEE + E +H ++ + + C+P
Sbjct: 638 PE--ELEDRR--KRRQEAAAKRK-RLLEEKR---KKKEEAEHKKKMAWWESNNYQSFCLP 689
Query: 771 GTDSRP 776
+S P
Sbjct: 690 SEESEP 695
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 158 (60.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 56/227 (24%), Positives = 106/227 (46%)
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLR--RGGR-CLIADEMGLGKTLQ 232
RPE + V ++ + + L + L +QLEGV + ++ G C++ DEMGLGKT Q
Sbjct: 17 RPEPVRTRVQEQDLQEW--GLTGIRLRSYQLEGVNWLVQCFHGQNGCILGDEMGLGKTCQ 74
Query: 233 AIAIAACFISA----GSILVVCPAILRLSWAEELERWLP--FCLP-ADIHLVFGHRNNPV 285
IA+ + G L++CP + +W EE+ER+ P C+ R +
Sbjct: 75 TIALLIYLVGRLNDEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARRQQDL 134
Query: 286 HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXX 345
V++ +Y + + + W++L VDE+H ++ ++
Sbjct: 135 RQESGFHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLK-----NQSSLLHRTLSEFSV 189
Query: 346 XXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY-DFAKTYCDVK 391
R+ LL+GTP + +++ ++++ P L + + DF + Y D++
Sbjct: 190 VFRL-LLTGTPIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIE 235
Score = 157 (60.3 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 71/308 (23%), Positives = 137/308 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ +LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 358 HRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-KQPIFVFLLSTR 416
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ ++A V+F++ +P LQA RAHR GQ +V + +DT +E ++
Sbjct: 417 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 476
Query: 651 LNKSLRCVSSATNGKYDAL--QEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
L+ + G + L Q+ A E + L++S+ G + L + +S D+ +L
Sbjct: 477 AASKLQLTNMVIEGGHFTLGAQKPAAE--ADLQLSEILKFGLDKLLSSEGSSMDEI-DLK 533
Query: 709 KVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSC 768
+ E D + T D + A + E+ + S + N++ + GR YS
Sbjct: 534 SI--LGETKDGQW--TPDALPAAAEGESREQE--EGSELNSYGKENHMYLFEGRD--YSK 585
Query: 769 VPGTDSRPRPLFE---SFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTK 825
P + R FE + + L+ T H L+ N G + + A PI+R K
Sbjct: 586 EPSKEDRKS--FEQLVNLQKTLLEKTSHGGRSLR-NKG------SVLIPGLAEGPIKRKK 636
Query: 826 LLGKPLQL 833
+L P +L
Sbjct: 637 ILS-PEEL 643
Score = 52 (23.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/123 (21%), Positives = 48/123 (39%)
Query: 670 QEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEIT 729
QE A + +E K +E S+ +Q E SE D + DE +
Sbjct: 651 QEAAAKRKKLMEEKKKAKEEAEHRKKMAWWESNGYQSFCLPSEDSELEDLEDLEDGDETS 710
Query: 730 AKMNDKLLEESKTD-------HSPTETDD----HHNNVSQYTGRIHLYSCVPGTDSRPRP 778
A+++ + L+ + + H +D H + S GR L++ + + PR
Sbjct: 711 AELDYEDLDLTSINYVSGDVTHPQAGEEDAVIVHCVDDSGRWGRGGLFTALEARSAEPRK 770
Query: 779 LFE 781
++E
Sbjct: 771 IYE 773
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 157 (60.3 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 403
Score = 155 (59.6 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 53/230 (23%), Positives = 109/230 (47%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F + N +
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFML 563
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA V+ + +P + LQA DRAHR GQ V ++ +T +E
Sbjct: 564 STRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 623
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR + +N K + LQ I G +++ S +++ ED+T
Sbjct: 624 VERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGATHVFASKESELTDEDITT 682
Query: 695 -LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESK 741
L+ + +++ + L K+ ESS +FR ++T + + E+ K
Sbjct: 683 LLERGERKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREKQK 730
Score = 41 (19.5 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K ++ Y G ++ +++ + +++++VL M +
Sbjct: 393 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRL 452
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 453 LNILMQ 458
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 158 (60.7 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 35/125 (28%), Positives = 63/125 (50%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +LD ++ + G+ + R+DG+T DRQ+ V +F +
Sbjct: 605 HRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTR 664
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
L+ + A V+ ++ +P + QAEDR HR GQT V I+ K T DE+ ++
Sbjct: 665 AGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEI 724
Query: 651 LNKSL 655
+ L
Sbjct: 725 AKRKL 729
Score = 152 (58.6 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 52/208 (25%), Positives = 91/208 (43%)
Query: 200 VILPFQLEGVRFGL---RRGGR-CLIADEMGLGKTLQAIAIAACFI----SAGSILVVCP 251
++ P+QL GV F L ++G ++ADEMGLGKT+QAI G LVVCP
Sbjct: 212 ILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCP 271
Query: 252 AILRLSWAEELERWLPFCLPADIH----LVFGHRNNPVHLTRFP---RVVVISYTMLHRL 304
A + +W EL +W P H + N + P V+++ Y++ R
Sbjct: 272 ASVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERH 331
Query: 305 -------RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPS 357
RK + W+ +++DE+H ++ K + + ++L+GTP
Sbjct: 332 SEQQKDDRKVLKRWRWSCVLMDEAHALK-DKNSYRWKNLMSVARNANQR---LMLTGTPL 387
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAK 385
+ ++++ + + P + D K
Sbjct: 388 QNDLHELWSLLEFMLPDIFTTENVDLKK 415
Score = 40 (19.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 449 SEIVSAKAAVG---VINDSEKDATNDKTPKDSDEHDDSG 484
+++V A VG VI D E +D + S D+ G
Sbjct: 98 TKVVMRAARVGRRFVIEDEEASDDDDDEAESSASEDEFG 136
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 159 (61.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 497 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFML 556
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 557 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 616
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 617 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 675
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 676 ILERGAKKTAEMNEKLSKMGESS 698
Score = 154 (59.3 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 58/206 (28%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 182 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 241
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P CL D + V L V V SY ML + KS+ ++
Sbjct: 242 NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 299
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 300 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 354 LPDVFNSAD-DF-DSWFDTNNCLGDQ 377
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 386 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 445
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 446 LNILMQ 451
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 159 (61.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 498 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFML 557
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 558 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 617
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 618 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 676
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 677 ILERGAKKTAEMNEKLSKMGESS 699
Score = 154 (59.3 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 58/206 (28%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 183 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 242
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P CL D + V L V V SY ML + KS+ ++
Sbjct: 243 NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 300
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 301 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 354
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 355 LPDVFNSAD-DF-DSWFDTNNCLGDQ 378
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 447 LNILMQ 452
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 159 (61.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 498 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFML 557
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 558 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 617
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 618 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 676
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 677 ILERGAKKTAEMNEKLSKMGESS 699
Score = 154 (59.3 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 58/206 (28%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 183 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 242
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P CL D + V L V V SY ML + KS+ ++
Sbjct: 243 NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 300
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 301 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 354
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 355 LPDVFNSAD-DF-DSWFDTNNCLGDQ 378
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 447 LNILMQ 452
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 159 (61.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 498 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFML 557
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 558 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 617
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 618 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 676
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 677 ILERGAKKTAEMNEKLSKMGESS 699
Score = 154 (59.3 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 58/206 (28%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 183 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 242
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P CL D + V L V V SY ML + KS+ ++
Sbjct: 243 NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 300
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 301 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 354
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 355 LPDVFNSAD-DF-DSWFDTNNCLGDQ 378
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 447 LNILMQ 452
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 159 (61.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 498 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFML 557
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 558 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 617
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 618 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 676
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 677 ILERGAKKTAEMNEKLSKMGESS 699
Score = 154 (59.3 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 58/206 (28%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 183 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 242
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P CL D + V L V V SY ML + KS+ ++
Sbjct: 243 NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 300
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 301 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 354
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 355 LPDVFNSAD-DF-DSWFDTNNCLGDQ 378
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 447 LNILMQ 452
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 164 (62.8 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 55/218 (25%), Positives = 100/218 (45%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPAILR 255
+Q+ G+ + ++ RG ++ADEMGLGKTLQ I++ ++S G L++ P
Sbjct: 279 YQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLG-YLSEYKGIRGPHLIIAPKSTL 337
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
WA+E RW PF H R N + +F V + +Y + R + + +
Sbjct: 338 SGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFKKFD-VCITTYEVAIREKSTFKKF 396
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W +I+DE+H ++ +E R+ L++GTP + ++++ +N L
Sbjct: 397 SWRYIIIDEAHRIK-----NENSVLSKGVRMFNSQFRL-LITGTPLQNNLHELWSLLNFL 450
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
P + + DF K + D+ Q ++ K +R
Sbjct: 451 LPDVFSSSD-DFDKWF-DLANNTENQQEVIDKLHKVLR 486
Score = 150 (57.9 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 30/118 (25%), Positives = 67/118 (56%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXX 587
R ++++IF+ ++LD +++++ +G + RIDG+T R++++ ++ +++
Sbjct: 596 RGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLL 655
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ ++A V+ + +P + LQA+DRAHR GQT V +Y F +++ +E
Sbjct: 656 TTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSMEE 713
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 157 (60.3 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 403
Score = 155 (59.6 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 53/230 (23%), Positives = 109/230 (47%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F + N +
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFML 563
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA V+ + +P + LQA DRAHR GQ V ++ +T +E
Sbjct: 564 STRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 623
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR + +N K + LQ I G +++ S +++ ED+T
Sbjct: 624 VERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGATHVFASKESELTDEDITT 682
Query: 695 -LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESK 741
L+ + +++ + L K+ ESS +FR ++T + + E+ K
Sbjct: 683 LLERGERKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREKQK 730
Score = 41 (19.5 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K ++ Y G ++ +++ + +++++VL M +
Sbjct: 393 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRL 452
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 453 LNILMQ 458
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 161 (61.7 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 68/245 (27%), Positives = 113/245 (46%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRL 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A + G LVV P
Sbjct: 236 YQVEGIEW-LRMLWENGINGILADEMGLGKTIQCIAHIAMMVEKKVLGPFLVVAPLSTLP 294
Query: 257 SWAEELERWLP------FCLPAD--IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W E +R+ P + P + LV R + L P VVV S+ + R RK +
Sbjct: 295 NWISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMCP-VVVTSFEIAMRDRKFL 353
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
W LIVDE H ++ + +E +LL+GTP + +++ +
Sbjct: 354 QRFHWNYLIVDEGHRIK-NLNCRLVQELKMLPTDNK-----LLLTGTPLQNNLSELWSLL 407
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
N L P + K F +++ D+ T+ + + + L L+++L ++RRLK
Sbjct: 408 NFLLPDVFDDLK-SF-ESWFDISTITSDAENIVANEREQNILHMLHLILTP-FLLRRLKS 464
Query: 429 HLLVQ 433
+ ++
Sbjct: 465 DVTLE 469
Score = 148 (57.2 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K++IF+ +LD + ++ +G + R+DG+ DR + F EV
Sbjct: 626 ELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFL 685
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ +SA V+ + +P LQA+DR HR GQT V ++ +T D
Sbjct: 686 FLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTID 745
Query: 645 E 645
E
Sbjct: 746 E 746
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 163 (62.4 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 66/243 (27%), Positives = 107/243 (44%)
Query: 204 FQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLS 257
+QLEG+ + L G C ++ADEMGLGKT+QAI++ A F +G L+ P +
Sbjct: 205 YQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHNVSGPFLISAPLSTVSN 264
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTR------------FPRVVVISYTMLHRLR 305
W +E RW P H G R+ L + FP VV SY + R
Sbjct: 265 WVDEFARWTPGIKTVLYH---GTRDERAQLRKKFMNLRDQKSPDFP-VVCTSYEICMNDR 320
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIF 365
K + + W +IVDE H ++ E R+ L++GTP + +++
Sbjct: 321 KFLAQYQWRYIIVDEGHRLKNMNCRLIKE-----LLSYNSANRL-LITGTPLQNNITELW 374
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIR 424
++ L P + F + + D +V GQ + K + ++ +LK ++R
Sbjct: 375 SLLHFLLPEIFNDLN-SF-QNWFDFSSVLDNNGQTDMIERRKRTLVSTMHSILKP-FLLR 431
Query: 425 RLK 427
R+K
Sbjct: 432 RVK 434
Score = 146 (56.5 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 50/233 (21%), Positives = 97/233 (41%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
+ +K++IF+ LD +Q++ + + RIDG DRQ+ + +F + K
Sbjct: 641 KGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNTDKDYKIFLL 700
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +A V+ + +P LQA+DRAHR GQT V +Y K T +++
Sbjct: 701 STRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTL 760
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQ- 705
+ + R L+ + ++ + + ++ +D+ L + D+F+
Sbjct: 761 LEKADSKRR------------LERLVIQKGKFKSLLSESTMSRDDVDELKRALGEDEFER 808
Query: 706 -ELMKVPESSEAS-DFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNV 756
E P S + D R + E + +K L+ ET +N+
Sbjct: 809 FEASADPASILSDEDLRVLTDRSEEAYALAEKGLDVDGKAFKAVETKRDGDNL 861
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 176 (67.0 bits), Expect = 7.1e-18, Sum P(3) = 7.1e-18
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
A +I VN +K++IF+ +VLD +++ + G F R+DG+T +RQS + F
Sbjct: 994 AKEIGVN--KSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKE 1051
Query: 581 EVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ ++ + A V+F +L +P + QAEDRAHR GQ V IY A+
Sbjct: 1052 TIPVFLLSTNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAE 1111
Query: 641 DTTDESHWQNLNK 653
+T D + ++ N+
Sbjct: 1112 NTVDINIHESANQ 1124
Score = 145 (56.1 bits), Expect = 7.1e-18, Sum P(3) = 7.1e-18
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
PK + V+ +QL G+ + + ++ADEMGLGKT+Q I++ A A G
Sbjct: 535 PKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLAHIKEAYNDNGPH 594
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT-----RFP----RVVVIS 297
LVV PA + +W E + W P I +G+ L + P V++ +
Sbjct: 595 LVVVPATILANWEREFQTWCP---SLSIVRYYGNLREREELRYELKKKRPGKDFNVILTT 651
Query: 298 YTMLHRLR-KSMIEQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
Y +L + +++ D++ LI+DE+ +++ S + R+ LL+GT
Sbjct: 652 YNLLFANNDRGFLKRFDYSFLILDEAQNIKNSD-----SKRYKNIFKIGAHHRL-LLTGT 705
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYD 382
P + Y+++ +N L P + G K D
Sbjct: 706 PLQNNLYELWSLLNFLMPHIFGSVKKD 732
Score = 39 (18.8 bits), Expect = 7.1e-18, Sum P(3) = 7.1e-18
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 731 KMNDKLLEESKTDHSPTE 748
K+ND +LEE +++ T+
Sbjct: 1127 KLNDNVLEEGTFNNAETK 1144
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 159 (61.0 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 51/203 (25%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ +++++ N K
Sbjct: 497 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFML 556
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 557 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 616
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 617 VERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIR-HGATHVFASKESEITDEDIDG 675
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 676 ILERGAKKTAEMNEKLSKMGESS 698
Score = 151 (58.2 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 57/206 (27%), Positives = 96/206 (46%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 182 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 241
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E ++W+P CL D + V L V V SY ML + KS+ ++
Sbjct: 242 NWMSEFKKWVPTLRSVCLIGDKEQRAAFVRD-VLLPGEWDVCVTSYEMLIK-EKSVFKKF 299
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 300 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWSLLNFL 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQ 397
P + A DF ++ D G Q
Sbjct: 354 LPDVFNSAD-DF-DSWFDTNNCLGDQ 377
Score = 41 (19.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L M +
Sbjct: 386 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 445
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 446 LNILMQ 451
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 176 (67.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
NK ++F +K+LD ++ F++ F+R+DG+T RQ V F +
Sbjct: 1785 NKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTR 1844
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+F + +PS+ QA DR HR GQT V+++ F + T +E+ W+
Sbjct: 1845 SGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWK 1903
Score = 139 (54.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 59/259 (22%), Positives = 125/259 (48%)
Query: 186 VDEM-IGKLPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAI----A 237
+DE + K+P + + +Q G+ + L + ++ADEMGLGKTLQ I++ A
Sbjct: 646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLA 705
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR--- 292
F G LV+ P + ++W EL+R+ P C I +G++N + F +
Sbjct: 706 YYFNIWGPHLVIVPTSILINWEIELKRFCP-CFK--ILSYYGNQNERYKKRVGWFNKDSF 762
Query: 293 -VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVL 351
+ + SY+ + + + W +I+DE+H+++ + T +L
Sbjct: 763 HICISSYSTVVKDHLVFKRKRWKYIILDEAHNIK-NFNTKR-----WNIILSLKRDNCLL 816
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
++GTP + +++ ++ L P + + DF + + D + + ++ SK + ++
Sbjct: 817 ITGTPLQNSLEELWSLLHFLMPNIF-TSHLDFKEWFSDPLNLAIEKSKIHH--SKEL-ID 872
Query: 412 ELNVLLKQTVMIRRLKQHL 430
L+ +++ ++ RRLK+++
Sbjct: 873 RLHTVIRPYIL-RRLKKNV 890
Score = 55 (24.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSGAC 486
ND D N++ DSD++DD C
Sbjct: 620 NDDNNDDNNNEHKNDSDDNDDILTC 644
Score = 45 (20.9 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D ND ++D+++D
Sbjct: 589 NDNNNDNNNDNNDDNNDDNND 609
Score = 44 (20.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D ND ++D+++D
Sbjct: 585 NDNNNDNNNDNNNDNNDDNND 605
Score = 44 (20.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 462 NDSEKDATNDKT-PKDSDEHDDS 483
N+SE D ND ++D +DD+
Sbjct: 581 NNSENDNNNDNNNDNNNDNNDDN 603
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D +D ++D+++D
Sbjct: 593 NDNNNDNNDDNNDDNNDDNND 613
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 462 NDSEKDATNDKTPKDS--DEHDDS 483
ND D ND D+ D +DD+
Sbjct: 604 NDDNNDDNNDDNNDDNNDDNNDDN 627
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 462 NDSEKDATNDKTPKDS--DEHDDS 483
ND D ND D+ D +DD+
Sbjct: 600 NDDNNDDNNDDNNDDNNDDNNDDN 623
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D +D ++D+++D
Sbjct: 597 NDNNDDNNDDNNDDNNDDNND 617
Score = 37 (18.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 121 NNSGGKACVYKLRDYN 136
NN+ G +Y + YN
Sbjct: 1302 NNNNGNNNIYNMNRYN 1317
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 176 (67.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
NK ++F +K+LD ++ F++ F+R+DG+T RQ V F +
Sbjct: 1785 NKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTR 1844
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+F + +PS+ QA DR HR GQT V+++ F + T +E+ W+
Sbjct: 1845 SGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWK 1903
Score = 139 (54.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 59/259 (22%), Positives = 125/259 (48%)
Query: 186 VDEM-IGKLPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAI----A 237
+DE + K+P + + +Q G+ + L + ++ADEMGLGKTLQ I++ A
Sbjct: 646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLA 705
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR--- 292
F G LV+ P + ++W EL+R+ P C I +G++N + F +
Sbjct: 706 YYFNIWGPHLVIVPTSILINWEIELKRFCP-CFK--ILSYYGNQNERYKKRVGWFNKDSF 762
Query: 293 -VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVL 351
+ + SY+ + + + W +I+DE+H+++ + T +L
Sbjct: 763 HICISSYSTVVKDHLVFKRKRWKYIILDEAHNIK-NFNTKR-----WNIILSLKRDNCLL 816
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
++GTP + +++ ++ L P + + DF + + D + + ++ SK + ++
Sbjct: 817 ITGTPLQNSLEELWSLLHFLMPNIF-TSHLDFKEWFSDPLNLAIEKSKIHH--SKEL-ID 872
Query: 412 ELNVLLKQTVMIRRLKQHL 430
L+ +++ ++ RRLK+++
Sbjct: 873 RLHTVIRPYIL-RRLKKNV 890
Score = 55 (24.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSGAC 486
ND D N++ DSD++DD C
Sbjct: 620 NDDNNDDNNNEHKNDSDDNDDILTC 644
Score = 45 (20.9 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D ND ++D+++D
Sbjct: 589 NDNNNDNNNDNNDDNNDDNND 609
Score = 44 (20.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D ND ++D+++D
Sbjct: 585 NDNNNDNNNDNNNDNNDDNND 605
Score = 44 (20.5 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 462 NDSEKDATNDKT-PKDSDEHDDS 483
N+SE D ND ++D +DD+
Sbjct: 581 NNSENDNNNDNNNDNNNDNNDDN 603
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D +D ++D+++D
Sbjct: 593 NDNNNDNNDDNNDDNNDDNND 613
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 462 NDSEKDATNDKTPKDS--DEHDDS 483
ND D ND D+ D +DD+
Sbjct: 604 NDDNNDDNNDDNNDDNNDDNNDDN 627
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 462 NDSEKDATNDKTPKDS--DEHDDS 483
ND D ND D+ D +DD+
Sbjct: 600 NDDNNDDNNDDNNDDNNDDNNDDN 623
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
ND+ D +D ++D+++D
Sbjct: 597 NDNNDDNNDDNNDDNNDDNND 617
Score = 37 (18.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 121 NNSGGKACVYKLRDYN 136
NN+ G +Y + YN
Sbjct: 1302 NNNNGNNNIYNMNRYN 1317
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 154 (59.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 62/238 (26%), Positives = 109/238 (45%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 166 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLY 225
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHL--TRFPR---VVVISYTMLHRLRKSMIEQ 311
+W E +RW+P L A + L+ + T P V V SY ML R +
Sbjct: 226 NWMNEFKRWVP-SLKA-VCLIGDREERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKF 283
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
+W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 284 NWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWALLNFL 337
Query: 372 WPGLLGKAK-YD--FAKTYC--DVKTVQGYQGQLFQDFSKGVRLE-ELNVLLKQTVMI 423
P + ++ +D F C D K V+ L + ++ + E ++L K+ + I
Sbjct: 338 LPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKI 395
Score = 153 (58.9 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + G+ R+DG T +RQ ++++F N K
Sbjct: 481 QGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFML 540
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQ V ++ F +T +E
Sbjct: 541 STRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERI 600
Query: 648 WQNLNKSLR 656
+ LR
Sbjct: 601 VERAEMKLR 609
Score = 47 (21.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 463 DSEKDATNDKTPKDSDEHDDSGACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDG 520
D E + N K DDS + + GK+ YQ G+ L E I+ ++A+ G
Sbjct: 134 DEELLSENSKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYE-NGINGILADEMG 191
Score = 41 (19.5 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 14/66 (21%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K ++ Y G ++ +++ + ++++++L M +
Sbjct: 370 VLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRL 429
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 430 LNVLMQ 435
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 159 (61.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 198 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLY 257
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 258 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 315
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 316 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 369
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 370 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 412
Score = 148 (57.2 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 54/232 (23%), Positives = 109/232 (46%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL--PRDRQSAVHSFQLSNEVKXXX 586
+ ++++IF+ ++LD ++++ +G + R+DG T R+++ A+ +F N K
Sbjct: 514 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIF 573
Query: 587 XXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ +SA V+ + +P + LQA DRAHR GQ V ++ +T +E
Sbjct: 574 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 633
Query: 646 SHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDL 693
+ LR + +N K + LQ I G +++ S +++ ED+
Sbjct: 634 RIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIR-HGATHVFASKESELTDEDI 692
Query: 694 T--LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESK 741
T L+ + +++ + L K+ ESS +FR ++T + + E+ K
Sbjct: 693 TTLLERGEKKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREKQK 742
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 160 (61.4 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 67/238 (28%), Positives = 116/238 (48%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 110 YQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 169
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPR---VVVISYTMLHRLRKSMIE 310
+W E +RW+P L A + L+ G ++ R P V V SY M+ + KS+ +
Sbjct: 170 NWMNEFKRWVP-SLRA-VCLI-GDKDARAAFIRDVMMPGEWDVCVTSYEMVIK-EKSVFK 225
Query: 311 Q-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
+ +W L++DE+H ++ +E + R+ LL+GTP + ++++ +N
Sbjct: 226 KFNWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWALLN 279
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 280 FLLPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 324
Score = 146 (56.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 47/203 (23%), Positives = 96/203 (47%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ +++++F+ ++LD ++++ +G + R+DG T +R+ A+ +F N K
Sbjct: 425 QGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFML 484
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQ V ++ +T +E
Sbjct: 485 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERI 544
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR + +N K + LQ I G +++ S ++ ED+T
Sbjct: 545 VERAEIKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMIR-HGATHVFASKDSELTEEDITT 603
Query: 695 -LD--QVASSDQFQELMKVPESS 714
L+ + +++ + L K+ ESS
Sbjct: 604 ILERGEKKTAEMNERLQKMGESS 626
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 154 (59.3 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 58/208 (27%), Positives = 101/208 (48%)
Query: 204 FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + L G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 168 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 227
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPR---VVVISYTMLHRLRKSMIE 310
+W E +RW+P L A + L+ G ++ R P V V SY ML + KS+ +
Sbjct: 228 NWMNEFKRWVP-TLRA-VCLI-GDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK-EKSVFK 283
Query: 311 Q-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
+ +W L++DE+H ++ +E + R+ LL+GTP + ++++ +N
Sbjct: 284 KFNWRYLVIDEAHRIK-----NEKSKLSEIVREFKTTNRL-LLTGTPLQNNLHELWALLN 337
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQ 397
L P + ++ DF ++ D G Q
Sbjct: 338 FLLPDVFNSSE-DF-DSWFDTNNCLGDQ 363
Score = 152 (58.6 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 50/203 (24%), Positives = 100/203 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + R+DG T +RQ++++++ K
Sbjct: 483 QGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFML 542
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQT V ++ F +T +E
Sbjct: 543 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERI 602
Query: 648 WQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT- 694
+ LR V N GK + LQ I G +++ S +++ ED+
Sbjct: 603 VERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIR-HGATHVFASKESEITDEDIDH 661
Query: 695 -LDQVA--SSDQFQELMKVPESS 714
L++ A +++ ++L K+ ESS
Sbjct: 662 ILERGAKKTAEMNEKLSKMGESS 684
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVL 416
+L P LL + K D K+ K V+ Y G ++ +++ + ++++++L
Sbjct: 372 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDIL 420
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 157 (60.3 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 53/195 (27%), Positives = 91/195 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ I++ AG +V+ P
Sbjct: 131 YQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQ 190
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMI 309
+W E ++W P CL D RN + P V V SY M R KS+
Sbjct: 191 NWVNEFKKWCPSLRAVCLIGDQDT----RNTFIRDVLMPGEWDVCVTSYEMCIR-EKSVF 245
Query: 310 EQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
++ +W L++DE+H ++ +E + R+ L++GTP + ++++ +
Sbjct: 246 KKFNWRYLVIDEAHRIK-----NEKSKLSEILREFKTANRL-LITGTPLQNNLHELWALL 299
Query: 369 NMLWPGLLGKAKYDF 383
N L P + ++ DF
Sbjct: 300 NFLLPDVFNSSE-DF 313
Score = 148 (57.2 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 51/215 (23%), Positives = 99/215 (46%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ ++LD ++++ + + R+DG T DR + F + N K
Sbjct: 446 QGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFML 505
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA DRAHR GQ V ++ + T +E
Sbjct: 506 STRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKI 565
Query: 648 WQN------LNKSL----RCVSSATNG-KYDALQEIAVEGVSYLEMSDKTDRGSEDLTL- 695
+ L+K + R V + +N D + I G + + S +TD ED+ +
Sbjct: 566 VERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFGANQVFSSKETDITDEDIDVI 625
Query: 696 ---DQVASSDQFQELMKVPESSEASDFRAINTNDE 727
+ +++Q L + ESS + F ++TN E
Sbjct: 626 LERGEAKTAEQKAALDSLGESSLRT-F-TMDTNGE 658
Score = 37 (18.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 302 HRLRKSMIEQDWALLIVDES 321
HR RK+ E+D LL D +
Sbjct: 90 HRHRKTEQEEDEELLAEDSA 109
Score = 37 (18.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 463 DSEKDATNDKTPKDSDEHDD 482
D EKD + + K E D+
Sbjct: 82 DKEKDVADHRHRKTEQEEDE 101
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 181 (68.8 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 212 GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAGSI---------LVVCPAILRLSWAE 260
G+R GRC ++ADEMGLGKTLQ + + + G LVVCP L +WA
Sbjct: 325 GMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAA 384
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E +WL + + HR + V+VISY ML R + E D+ +LI DE
Sbjct: 385 EFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDE 444
Query: 321 SHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLG-KA 379
H ++ S + R ++L+GTP + + + I + PG+LG A
Sbjct: 445 GHRLKNSNIKT------AGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSA 498
Query: 380 KY 381
Y
Sbjct: 499 AY 500
Score = 122 (48.0 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 33/125 (26%), Positives = 60/125 (48%)
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXX 585
VN R++++++ ++H + LD +Q+ + G + R+DG T RQ V SF +
Sbjct: 662 VN-RTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFL 720
Query: 586 XXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
L+ A ++V ++ +P+ +QA R R GQ V+IY F + +
Sbjct: 721 LLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIE 780
Query: 645 ESHWQ 649
E +Q
Sbjct: 781 EKIYQ 785
Score = 43 (20.2 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 467 DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK---LSGFREWLSIHPVIAESDGAAD 523
D + K+S E D+G C+LG+ + + + + +S W + +S G D
Sbjct: 839 DGNTPGSVKESSE--DTGRSCQLGRQADNAISVPQRVSMSELMHWRHFSGAV-QSYG--D 893
Query: 524 IDVNPRSN 531
I +N N
Sbjct: 894 IYLNQACN 901
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 159 (61.0 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 63/236 (26%), Positives = 111/236 (47%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 190 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 249
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + + V V SY M+ + KS+ ++
Sbjct: 250 NWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 307
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 308 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 361
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 362 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 404
Score = 146 (56.5 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 31/121 (25%), Positives = 62/121 (51%)
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXX 585
+ + ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F N K
Sbjct: 502 IKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFI 561
Query: 586 XXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ +SA V+ + +P + LQA DRAHR GQ V ++ +T +
Sbjct: 562 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Query: 645 E 645
E
Sbjct: 622 E 622
Score = 42 (19.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 15/66 (22%), Positives = 35/66 (53%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+L P LL + K D K+ K ++ Y G ++ +++ + +++++VL M +
Sbjct: 394 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 453
Query: 428 QHLLVQ 433
++L+Q
Sbjct: 454 LNILMQ 459
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 169 (64.5 bits), Expect = 4.8e-17, Sum P(3) = 4.8e-17
Identities = 67/257 (26%), Positives = 126/257 (49%)
Query: 192 KLPKSLLDVILPFQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----G 244
K PK L+ + +QL+G+ + L +G ++ADEMGLGKT+Q+I++ A G
Sbjct: 833 KQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWG 892
Query: 245 SILVVCPAILRLSWAEELERWLPF--CLP-----ADIHLV--FGHRNNPVHLTRFP-RVV 294
LV+ PA +W +E+ R++P C+P D ++ F R N + P VV
Sbjct: 893 PFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVV 952
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSG 354
V SY ++ + W +I+DE+ ++ S + R+ LL+G
Sbjct: 953 VTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSR-----WKSLLAFKCRNRL-LLTG 1006
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEEL 413
TP + +++ ++ + P L +F++ + D+++ QL + +L+ L
Sbjct: 1007 TPIQNTMQELWALLHFIMPSLFDSHN-EFSEWFSKDIESHAQSNTQLNEQ-----QLKRL 1060
Query: 414 NVLLKQTVMIRRLKQHL 430
+++LK M+RR+K+++
Sbjct: 1061 HMILKP-FMLRRVKKNV 1076
Score = 146 (56.5 bits), Expect = 4.8e-17, Sum P(3) = 4.8e-17
Identities = 29/122 (23%), Positives = 65/122 (53%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+++ ++++I+ +++D ++E+++ + ++R+DG++ R+ V +Q E+
Sbjct: 1439 VELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELF 1498
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
++ ++A V+F + +PS+ QA DRAHR GQ V +Y F + T
Sbjct: 1499 VFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTI 1558
Query: 644 DE 645
+E
Sbjct: 1559 EE 1560
Score = 44 (20.5 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 649 QNLNKSLRC-VSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
+ + K + C ++ Y AL+ +S E+ +K G +D + QF+++
Sbjct: 1082 EKIEKEVYCDLTQRQKILYQALRR----QISIAELLEKAILGGDDTVASIMNLVMQFRKV 1137
Query: 708 MKVPESSEASDFRA 721
P+ E D R+
Sbjct: 1138 CNHPDLFEREDVRS 1151
Score = 42 (19.8 bits), Expect = 4.8e-17, Sum P(3) = 4.8e-17
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 48 STEPTHFPKSALADPNSTTQLPENFRVRLE-ICSPDSFSVTP 88
+T+P F A +DP + P + R++ S D +++ P
Sbjct: 132 ATQPDLFETPAQSDPILFSSYPHAAQARVDPSISKDLYNMVP 173
Score = 38 (18.4 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSGA 485
+D + + T KDS+++D++ A
Sbjct: 486 SDKSRAKLSSDTNKDSEKNDNNDA 509
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 175 (66.7 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 76/274 (27%), Positives = 122/274 (44%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLR--RGGRCLIADEMGLGKT 230
+ + D VVD ++ K + P Q EGV+F G+R G ++AD+MGLGKT
Sbjct: 280 KRIVDVVVDPILAKH-------LRPHQREGVKFLYECVMGMRSFNGEGAILADDMGLGKT 332
Query: 231 LQAIAIAACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPADIHL-VFG 279
LQ I + + I L+VCP L +W E +WL + + VF
Sbjct: 333 LQTITLLWTLLKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKWL-----GNERIGVFV 387
Query: 280 HRNNPVHLTRFPR-----VVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEP 333
+ LT F ++++ Y L +++ + + ++I DE H ++ + S
Sbjct: 388 FDDKRKRLTDFTMGKAYSIMIVGYEKLRSVQEGLARGNGVDIVIADEGHRLKTLQNKS-- 445
Query: 334 EEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
RI+L SGTP + + F ++++ PG+LG K F K + + V
Sbjct: 446 ---GQAIQSLNATKRIIL-SGTPIQNDLKEFFAAVDLVNPGVLGSFK-SFIKEF-EGPIV 499
Query: 394 QGYQGQLFQ-DFSKG-VRLEELNVLLKQTVMIRR 425
+ Q + + D KG R EEL L Q M+RR
Sbjct: 500 RSRQPEATEKDIEKGEARNEELRELTSQ-FMLRR 532
Score = 127 (49.8 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL--SNEVKXXXX 587
S K+++ +++ LD + +S + F+R+DG+T + RQS V F ++
Sbjct: 648 SEKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDFNRHPASTCFAFLL 707
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
L+ A +V ++ +P+ +QA R HR GQ +IY + + +E
Sbjct: 708 SAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEKI 767
Query: 648 WQ 649
WQ
Sbjct: 768 WQ 769
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 177 (67.4 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 66/220 (30%), Positives = 100/220 (45%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRF------GLRRGGRC--LIADEMGLGKTLQAIAI 236
VVD +I P L+ + P Q EG+ F G+R GRC ++ADEMGLGKTLQ I++
Sbjct: 284 VVDVVID--PH-LVYHLRPHQKEGIMFLYECVMGMRVNGRCGAILADEMGLGKTLQCISL 340
Query: 237 AACFISAG---------SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
G L+V P L +W +E ++WL + H+
Sbjct: 341 IWTLQCQGPYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFPVDQDHKVEEFTR 400
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
+ F V++ISY ML R + + LLI DE H ++ S +
Sbjct: 401 SPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSAIKT------TAALISLSCE 454
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
+ V+L+GTP + + F I+ + PG+LG + + K Y
Sbjct: 455 KRVILTGTPVQNDLQEFFALIDFVNPGILGSLSF-YRKVY 493
Score = 116 (45.9 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 31/127 (24%), Positives = 60/127 (47%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF--QLSNEV 582
++ P + K+++ +++ + LD +QE G + R+DG T RQ V SF + S++
Sbjct: 657 ELRP-TEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDF 715
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
L+ +++ ++ +P+ +QA R R GQ + V+IY T
Sbjct: 716 -IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGT 774
Query: 643 TDESHWQ 649
+E +Q
Sbjct: 775 IEEKIYQ 781
Score = 54 (24.1 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 957 VCTNCQLDCHKLVKH-IKPLSLEQRRKY 983
V NCQL H+ + +KPLS+ Q +++
Sbjct: 848 VSRNCQLGAHQQKSNSLKPLSMSQLKQW 875
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 161 (61.7 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 65/257 (25%), Positives = 118/257 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E I K P L+ L +QL G+ + + L +ADEMGLGKT+Q+I++
Sbjct: 454 IKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLY 513
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHLTRFPRVVVI 296
G LV+ P +W E E+W P L I+ R++ H R V+
Sbjct: 514 EVKKDIGPFLVIVPLSTITNWTLEFEKWAP-SLNTIIYKGTPNQRHSLQHQIRVGNFDVL 572
Query: 297 SYTMLHRLR-KSMIEQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSG 354
T + ++ KS++ + DWA +I+DE H ++ ++ + R++L +G
Sbjct: 573 LTTYEYIIKDKSLLSKHDWAHMIIDEGHRMK----NAQSKLSFTISHYYRTRNRLIL-TG 627
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL-FQDFSKGVRLEEL 413
TP + +++ +N + P + AK F + G Q +L + + + L
Sbjct: 628 TPLQNNLPELWALLNFVLPKIFNSAK-TFEDWFNTPFANTGTQEKLELTEEETLLIIRRL 686
Query: 414 NVLLKQTVMIRRLKQHL 430
+ +L+ ++RRLK+ +
Sbjct: 687 HKVLRP-FLLRRLKKEV 702
Score = 143 (55.4 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 39/166 (23%), Positives = 80/166 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
+++++F +V+D +++F+ K + ++R+DG+T +R +++F ++
Sbjct: 808 HRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLST 867
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQ + V I D+ +E +
Sbjct: 868 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILE 927
Query: 650 NLNKSLRCVSSATN-GKYDALQEIAVEGVSYLE--MSDKTDRGSED 692
+ L GK+D + A E ++L + +T+R +D
Sbjct: 928 RAMQKLDIDGKVIQAGKFDN-KSTAEEQEAFLRRLIESETNRDDDD 972
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 169 (64.5 bits), Expect = 9.7e-17, Sum P(3) = 9.7e-17
Identities = 49/217 (22%), Positives = 105/217 (48%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
D+ ++++I++ K+++ +++F+ + ++R+DG++ DR+ V FQ +
Sbjct: 1778 DLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFA 1837
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ +SA V+F + +P++ QA+DRAHR GQT V +Y K+T +
Sbjct: 1838 FLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIE 1897
Query: 645 ESHWQNLNKSLRCVSSA-TNGKYDA----LQEIAV-EGVSYLEMSDKTDRGSEDLTLDQV 698
E + + + S GK+++ L ++ E +S+L D+ + ++ +D
Sbjct: 1898 EKILKRAKQKHQIQSIVIAGGKFESNPEELDQVGENEAISFLLDDDELEERFKN-QIDPA 1956
Query: 699 ASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDK 735
+ Q +VP ++ + + ND T K +K
Sbjct: 1957 TGKKRKQPEPEVPSIAD----KPFSPNDIPTTKPVNK 1989
Score = 146 (56.5 bits), Expect = 9.7e-17, Sum P(3) = 9.7e-17
Identities = 65/254 (25%), Positives = 115/254 (45%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----G 244
K P L + P+QL+G+ + + +G ++ADEMGLGKT+Q+IA+ A G
Sbjct: 1153 KQPTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWG 1212
Query: 245 SILVVCPAILRLSWAEELERWLP-F-CLP----ADIHLVFGHRNNPVHL--TRFP-RVVV 295
L+V P +W E +++P F +P NP L P V++
Sbjct: 1213 PFLIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLI 1272
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
SY ++ R K W +++DE+H ++ S R+ LL+GT
Sbjct: 1273 TSYNVIVRDEKYFHRLRWQYMVLDEAHAIK-----SSASNRWKTLMSFNCRNRL-LLTGT 1326
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELN 414
P + +++ ++ + P +FA+ + D++ QG L + +L L+
Sbjct: 1327 PIQNSMAELWALLHFIMPTFFDSHD-EFAEWFSKDIENHAMSQGGLNEH-----QLNRLH 1380
Query: 415 VLLKQTVMIRRLKQ 428
++LK M+RR+K+
Sbjct: 1381 MILKP-FMLRRIKR 1393
Score = 43 (20.2 bits), Expect = 9.7e-17, Sum P(3) = 9.7e-17
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 33 SNRQDAWRLSKCRKFSTEPTHFPKSALADPN 63
+N +++R S+ R S PT + PN
Sbjct: 37 NNNNNSYRRSRSRSRSPSPTRGRSPVMYSPN 67
Score = 39 (18.8 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 456 AAVG-VINDSEKDATNDKTPKDSDEHDDS 483
A +G ++N S+ +K K+ ++ DD+
Sbjct: 1022 ATIGSLMNGSQMPTEQNKKIKEKNDQDDN 1050
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 154 (59.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 31/121 (25%), Positives = 61/121 (50%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K+++F+ ++LD + ++ + F R+DG+ +R+ +HSF +V
Sbjct: 588 ELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFI 647
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D
Sbjct: 648 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTID 707
Query: 645 E 645
+
Sbjct: 708 Q 708
Score = 142 (55.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 63/246 (25%), Positives = 116/246 (47%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A I G +VC + L
Sbjct: 204 YQVEGMEW-LRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 262
Query: 257 SWAEELERWLPFCLPADIH--------LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W E +R+ P +P ++ ++ H + + VV+ S+ + R R ++
Sbjct: 263 NWMAEFKRFTPE-IPTMLYHGTQQERRILVKHIHERKGTLQIHPVVITSFEIAMRDRTTL 321
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
W LIVDE H ++ K E +LL+GTP + +++ +
Sbjct: 322 QNCYWKYLIVDEGHRIKNMKCRLIRE------LKRFNADNKLLLTGTPLQNNLSELWSLL 375
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N L P + K F +++ D+ ++ + + + ++ + V L L+ +L ++RRLK
Sbjct: 376 NFLLPDVFDDLK-SF-ESWFDITSLSETAEDIIAKEREQNV-LHMLHQILTP-FLLRRLK 431
Query: 428 QHLLVQ 433
+ ++
Sbjct: 432 SDVALE 437
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 155 (59.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 56/230 (24%), Positives = 103/230 (44%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K+++F+ +LD + ++ + F R+DG+ +R+ +HSF EV
Sbjct: 610 ELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFI 669
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D
Sbjct: 670 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 729
Query: 645 E------SHWQNLNKSLRCVSSATNGKYDA-LQEIAVEGVSYLEMSDKTDRGSEDLTLDQ 697
+ + + L K + + G+ L + ++ +E+ D E +
Sbjct: 730 QKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSRE 789
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEITAKMND-KLLEESKTDHSP 746
SD+ EL+ + S+ D +N + I KM K+LE S+ D SP
Sbjct: 790 KVISDKDLELLL--DRSDLID--QMNASGPIKEKMGIFKILENSE-DSSP 834
Score = 141 (54.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 66/248 (26%), Positives = 117/248 (47%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A I G +VC + L
Sbjct: 226 YQVEGMEW-LRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 284
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTR--FPR--------VVVISYTMLHRLRK 306
+W E +R+ P +P ++ G + L R + R VV+ S+ + R R
Sbjct: 285 NWMAEFKRFTPD-IPTMLY--HGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRN 341
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFH 366
++ W LIVDE H ++ K E +LL+GTP + +++
Sbjct: 342 ALQHCYWKYLIVDEGHRIKNMKCRLIRE------LKRFNADNKLLLTGTPLQNNLSELWS 395
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+N L P + K F +++ D+ ++ + + + ++ + V L L+ +L ++RR
Sbjct: 396 LLNFLLPDVFDDLK-SF-ESWFDITSLSETAEDIIAKEREQNV-LHMLHQILTP-FLLRR 451
Query: 426 LKQHLLVQ 433
LK + ++
Sbjct: 452 LKSDVALE 459
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 177 (67.4 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 72/298 (24%), Positives = 128/298 (42%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
D+ ++ +IF K+LD +++F++ G ++R+DG T RQ F N +
Sbjct: 1384 DLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILA 1443
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ + A V+F +L +P++ Q +DR HR GQT V+IY F ++ T +
Sbjct: 1444 FILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIE 1503
Query: 645 ESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQV-ASSDQ 703
+ + N+ R + + E + + L++ D G+++ D+ A+ D+
Sbjct: 1504 SNILRKANQK-RMLDDVVIQE----GEFTTDYFTKLDVRDMI--GNDEALKDEASAAMDR 1556
Query: 704 FQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHN-NVSQYTGR 762
E +V +S + +A + D AK K LE + D + DD N N S T
Sbjct: 1557 VLE-NRVTNTSRVFE-QAEDKEDIDAAKNAQKELEHA--DDG--DFDDRANANASGVTAA 1610
Query: 763 IHLYSCVPGTDSRP-RPL-FESFRPEELDNTEHISGCLKENPGYRHAIQAFIN--EWN 816
S T ++ PL E+ + +N E +P H + EWN
Sbjct: 1611 SASASGAGQTPTQAGTPLPDEAQQSLNANNAEVAEDTADSDPSVGHIDDYLLRFMEWN 1668
Score = 131 (51.2 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 56/226 (24%), Positives = 108/226 (47%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q IA+ A G LVV P + L+W E ++W P I
Sbjct: 847 ILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCP---GFKIM 903
Query: 276 LVFGHRNNPVHLTR------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
+G++ R V++ SY ++ + ++ + + W +I+DE+H+++ +
Sbjct: 904 TYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFR- 962
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWP------GLLGKAKY-D 382
+ R+ LL+GTP + +++ + L P G+ G A +
Sbjct: 963 ----SQRWQALLTFRTRARL-LLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRN 1017
Query: 383 FAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
F++ + V+ + + + D +K V + +L+ +L+ ++ RRLK
Sbjct: 1018 FSEWFRRPVEQILEHGRETMDDEAKQV-VTKLHTVLRPYIL-RRLK 1061
Score = 44 (20.5 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 898 WTINDEPLCKLCQKTCKSKNAKNAEY 923
W + DEPL K+ K K+ K E+
Sbjct: 1667 WNMKDEPLVLPVDKSMK-KSKKGKEH 1691
Score = 41 (19.5 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 459 GVINDSEKDATNDKTP---KDSDEHDDS-GACCRLGKISYQEL 497
G ND E+ +N T +D D+ DD G ++ Y L
Sbjct: 479 GSENDDEEGESNMSTETEEEDGDDRDDDVGLTAEELRLKYANL 521
Score = 40 (19.1 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502
++D D+ +D + + +D G LG S ++L ++ L
Sbjct: 588 MDDDMGDSDDDGYSEAESDDEDGGEPGLLGFFSAKDLSLSNL 629
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 155 (59.6 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 45/180 (25%), Positives = 84/180 (46%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ K+LD +Q+++ +G + R+DG+ +R A+ +F +
Sbjct: 364 HRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNFG-QQPIFVFLLSTR 422
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ ++A V+F + +P LQA RAHR GQ V I +DT +E ++
Sbjct: 423 AGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRR 482
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKV 710
LR ++ G AL + S L++S+ G + L L S+ Q EL +
Sbjct: 483 AASKLRLTNAIVEGGQFALGVHKPQEASDLQLSEILKFGLDKL-LSSEGSTVQDVELENI 541
Score = 143 (55.4 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 52/199 (26%), Positives = 94/199 (47%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAI 253
P+QL+GV + ++ G C++ DEMGLGKT Q I++ + L++CP
Sbjct: 48 PYQLDGVNWLVQCYQVQHG--CILGDEMGLGKTCQTISLLLYLTKKLTNKERSLILCPLS 105
Query: 254 LRLSWAEELERWLP---FCL-PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
+ +W EELER+ P F + + + N + F RV++ +Y + + +
Sbjct: 106 VLSNWKEELERFAPGLSFVTYVGNKEERYKLQQNLKEQSHF-RVLLTTYEICLKDAAFLK 164
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
DWA L+VDE+H R + S E +LL+GTP + +++ ++
Sbjct: 165 FFDWAALVVDEAH--RLKNQNSLLYETLTELPVGFS----LLLTGTPIQNSLQELYSLLS 218
Query: 370 MLWPGLLGKAKY-DFAKTY 387
+ P + + + +F + Y
Sbjct: 219 FIEPDIFPRKQVKEFVEYY 237
Score = 45 (20.9 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGT 772
S+E + R E AK KL+EE + + E H ++ + + +C+P
Sbjct: 635 SAEELETRR-KKRQEAAAK-RAKLMEERRKAKAEAE---HMKKMAWWESNRYTSTCLPSE 689
Query: 773 DSRPRPLFE 781
+S FE
Sbjct: 690 ESESEEEFE 698
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 154 (59.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 55/230 (23%), Positives = 102/230 (44%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K+++F+ ++LD + ++ + F R+DG+ +R+ +HSF +V
Sbjct: 611 ELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFI 670
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D
Sbjct: 671 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 730
Query: 645 ESHWQNL--NKSLRCVSSATN---GKYDALQEIA--VEGVSYLEMSDKTDRGSEDLTLDQ 697
+ + + L + N G L + ++ +E+ D E +
Sbjct: 731 QKIVERAAAKRKLEKLIIHKNHFKGGQSGLNQSKNFLDPKELMELLKSRDYEREVKGSRE 790
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEITAKMND-KLLEESKTDHSP 746
SD+ EL+ + S+ D +N + I KM K+LE S+ D SP
Sbjct: 791 KVISDKDLELLL--DRSDLID--QMNASGPIKEKMGIFKILENSE-DSSP 835
Score = 141 (54.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 66/246 (26%), Positives = 115/246 (46%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A I G +VC + L
Sbjct: 227 YQVEGMEW-LRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 285
Query: 257 SWAEELERWLPFCLPADI-HLVFGHRNNPV---HLTR----FPRVVVISYTMLHRLRKSM 308
+W E +R+ P +P + H R V H + VV+ S+ + R R ++
Sbjct: 286 NWMAEFQRFTPD-IPTMLYHGTQQERRKLVKNIHKRKGTLQIHPVVITSFEIAMRDRNAL 344
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
W LIVDE H ++ K E +LL+GTP + +++ +
Sbjct: 345 QHCYWKYLIVDEGHRIKNMKCRLIRE------LKRFNADNKLLLTGTPLQNNLSELWSLL 398
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N L P + K F +++ D+ ++ + + + ++ + V L L+ +L ++RRLK
Sbjct: 399 NFLLPDVFDDLK-SF-ESWFDITSLSETAEDIIAKEREQNV-LHMLHQILTP-FLLRRLK 454
Query: 428 QHLLVQ 433
+ ++
Sbjct: 455 SDVALE 460
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 151 (58.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 53/203 (26%), Positives = 97/203 (47%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
+QLEGV + ++ + G C++ DEMGLGKT Q IA+ + G LV+CP +
Sbjct: 43 YQLEGVNWLVQCFHCQNG-CILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVL 101
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------VVVISYTMLHRLRKSMI 309
+W EE+ER+ P L + G + L + R V++ +Y + + +
Sbjct: 102 SNWKEEMERFAPG-LSCVTYT--GDKEERARLQQDLRQESGFHVLLTTYEICLKDASFLK 158
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQIN 369
W++L VDE+H ++ ++ R+ LL+GTP + +++ +
Sbjct: 159 SFSWSVLAVDEAHRLK-----NQSSLLHRTLSEFSAVFRL-LLTGTPIQNSLRELYSLLC 212
Query: 370 MLWPGLLGKAKY-DFAKTYCDVK 391
++ P L + + DF + Y D++
Sbjct: 213 VVEPDLFCREQVEDFVQRYQDIE 235
Score = 144 (55.7 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 69/308 (22%), Positives = 132/308 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ +LD +Q+++ +G + R+DG+ +R A+ +F + +
Sbjct: 358 HRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-NQPIFVFLLSTR 416
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ ++A V+F++ +P LQA RAHR GQ +V + +DT +E ++
Sbjct: 417 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRK 476
Query: 651 LNKSLRCVSSATNGKY--DALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
L+ + G + Q+ + E + ++S+ G + L L SS + +L
Sbjct: 477 AASKLQLTNMVIEGGHFTPGAQKPSAE--ADFQLSEILKFGLDKL-LSSEGSSMEDIDLK 533
Query: 709 KVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSC 768
+ E D + A LE + S E+ + N++ + GR YS
Sbjct: 534 SI--LGETKDGQWTPDALPAAAAAGGGSLEPE--EGSELESRSYENHMYLFEGRD--YSK 587
Query: 769 VPGTDSRPRPLFE---SFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTK 825
P + R FE + + L+ T H G N G + + A PI+R K
Sbjct: 588 EPSKEDRKS--FEQLVNLQKTLLEKTSH-GGRTLRNKG------SVLIPGLAEGPIKRKK 638
Query: 826 LLGKPLQL 833
+L P +L
Sbjct: 639 ILS-PEEL 645
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 152 (58.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 55/226 (24%), Positives = 100/226 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
R +K+++F+ ++LD + ++ + F R+DG+ +R+ +HSF +V
Sbjct: 614 RGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVS 673
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D+
Sbjct: 674 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIV 733
Query: 649 QNL--NKSLRCVSSATN---GKYDALQEIA--VEGVSYLEMSDKTDRGSEDLTLDQVASS 701
+ + L + N G L + ++ +E+ D E + S
Sbjct: 734 ERAAAKRKLEKLIIHKNHFKGGQSGLNQSKNFLDPKELMELLKSRDYEREVKGSREKVIS 793
Query: 702 DQFQELMKVPESSEASDFRAINTNDEITAKMND-KLLEESKTDHSP 746
D+ EL+ + S+ D +N + I KM K+LE S+ D SP
Sbjct: 794 DKDLELLL--DRSDLID--QMNASGPIKEKMGIFKILENSE-DSSP 834
Score = 142 (55.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 66/246 (26%), Positives = 115/246 (46%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A I G +VC + L
Sbjct: 226 YQVEGMEW-LRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 284
Query: 257 SWAEELERWLPFCLPADI-HLVFGHRN---NPVHLTR----FPRVVVISYTMLHRLRKSM 308
+W E +R+ P +P + H R N +H + VV+ S+ + R R +
Sbjct: 285 NWMAEFQRFTPE-IPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVL 343
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
W LIVDE H ++ K E +LL+GTP + +++ +
Sbjct: 344 QHCYWKYLIVDEGHRIKNMKCRLIRE------LKRFNADNKLLLTGTPLQNNLSELWSLL 397
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N L P + K F +++ D+ ++ + + + ++ + V L L+ +L ++RRLK
Sbjct: 398 NFLLPDVFDDLK-SF-ESWFDITSLSETAEDIIAKEREQNV-LHMLHQILTP-FLLRRLK 453
Query: 428 QHLLVQ 433
+ ++
Sbjct: 454 SDVALE 459
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 154 (59.3 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 54/234 (23%), Positives = 96/234 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLST 1136
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F K + +E Q
Sbjct: 1137 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQ 1196
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + L A +S E+ D G+E L D++ D +E
Sbjct: 1197 VAKKKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEQLFKDELGEGDNKEEDSS 1252
Query: 710 VPESSEASDFRAINTNDEITA-----KMNDKLLEESKTDHSPTETDDHHNNVSQ 758
V + + R ++ N + T MN+ L + + D+ +V +
Sbjct: 1253 VIHYDDKAIDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDEEEEDVDR 1306
Score = 120 (47.3 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+QLEG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 738 PYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 797
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 798 INWEREFEMWAP 809
Score = 79 (32.9 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 24/98 (24%), Positives = 43/98 (43%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + + DWA L+VDE+H R + +LL
Sbjct: 857 VLLTSYELITIDQAILGSIDWACLVVDEAH------RLKNNQSKFFRVLNNYPLQHKLLL 910
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLE-GFLEEFADI 947
Score = 47 (21.6 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 681 EMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEE 739
E+ +KT+ E +V S Q E++++P+ E S A +E T K ++ E+
Sbjct: 1580 ELEEKTEGDGEK----EVKGSRQEDEIIEIPDEGEKSPSSA--KKEEKTDKESEASSEK 1632
Score = 45 (20.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINT--NDEITAKMNDKLLEES 740
S KT S + +D +SD+ +EL + + D + N + T+ D + EE
Sbjct: 1672 STKTKEESSEEKMDTSPASDEKKELKDEKDGVKPEDSAKLQNGENAKETSGGGDGVSEEK 1731
Query: 741 K 741
K
Sbjct: 1732 K 1732
Score = 39 (18.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFR---EWLSIHPVIAES 518
E D+ +C R K + K F EWL IH ++ S
Sbjct: 599 EGDEDKSCKRKNKDPFYARMEDKYGRFGVKIEWLFIHRILNHS 641
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 153 (58.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 29/115 (25%), Positives = 62/115 (53%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++++ +++D ++E+++ + + R+DG+T DR+ V FQ ++
Sbjct: 1338 HRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTR 1397
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ ++A V+F + +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1398 AGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEE 1452
Score = 145 (56.1 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 66/282 (23%), Positives = 132/282 (46%)
Query: 167 SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLR---RGGRCLIAD 223
++D N P L D + + P L + +QL+G+ + + +G ++AD
Sbjct: 769 TMDDSELNFQNPTSLGDIEISQ-----PTMLTAKLKEYQLKGLNWLVNLYEQGINGILAD 823
Query: 224 EMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFC--LP-----A 272
EMGLGKT+Q+I++ A G LV+ PA +W +E+ +++P LP
Sbjct: 824 EMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAK 883
Query: 273 DIHLV--FGHRNNPVHLTRFP-RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
D ++ F R + + V+V SY ++ + + W +I+DE+ ++ S+
Sbjct: 884 DRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQS 943
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC- 388
+ R+ LL+GTP + +++ ++ + P L +F++ +
Sbjct: 944 SR-----WKSLLGFHCRNRL-LLTGTPIQNNMQELWALLHFIMPTLFDSHD-EFSEWFSK 996
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
D+++ +L +D +L L+++LK M+RR+K+H+
Sbjct: 997 DIESHAQSNTKLNED-----QLRRLHMILKP-FMLRRVKKHV 1032
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 182 (69.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 55/228 (24%), Positives = 104/228 (45%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ + +K++IF+ +LD ++ +++ +G + R+DG T DRQ ++ F LS ++
Sbjct: 764 EIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFV 823
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ +SA +++ ++ +P QAEDR HR GQ V++ +K T +
Sbjct: 824 FLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVE 883
Query: 645 ESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQ 703
K L+ T+G L E A+ + E ++ G DL+ L A S +
Sbjct: 884 VGMLALAKKKLQLEKQVTDGVKGQLDEDALRELKEEEGGEQC--GGRDLSKLLSSAISGR 941
Query: 704 FQELMKVP-ESSEASDFR-AINTNDEITAKMNDKLLEESKTDHSPTET 749
+ ++ +S D A DE + +K E+ K + S T
Sbjct: 942 YDDVEDDSGDSKNGIDAEEAAKKEDEAVKEPVEK--EQQKEEESQPST 987
Score = 110 (43.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 63/253 (24%), Positives = 116/253 (45%)
Query: 204 FQLEGVRFGLRRGGR---CLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLS 257
+QL GV++ + + ++ DEMGLGKT+Q +A + G L+V P+ +
Sbjct: 397 YQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIEN 456
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLT-RFPR------VVVISYTML-HRLRKSMI 309
W E +W P + +G ++ HL R + V++ +Y M+ +
Sbjct: 457 WIGEFHKWCP---SIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKKF 513
Query: 310 EQDWAL--LIVDESHHVR-CSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFH 366
++++L +I DE H ++ C SE + +LL+GTP + ++
Sbjct: 514 FKNFSLNYVIYDEGHMLKNCD---SE----RYRGLMKVKGKKKILLTGTPLQN---NLIE 563
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKT--VQGYQ--GQLFQDFSKGV----RLEELNVLLK 418
I++++ +L K F K YC+ T +Q ++ G +K + R+EE +L
Sbjct: 564 LISLMY-FVLSKV---FNK-YCEDITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAIL- 617
Query: 419 QTVMIRRLKQHLL 431
Q ++RRLK +L
Sbjct: 618 QPYILRRLKNQVL 630
Score = 45 (20.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSG 484
++ E+D N++ +D D++++ G
Sbjct: 85 SEDEEDFDNNEEDEDDDDYEEEG 107
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSGA 485
++ + +A D+TP D + ++ A
Sbjct: 258 DEDDMNADGDETPSDDSDIEERRA 281
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 153 (58.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K+++F+ +LD + ++ +G F R+DG+ DR+ +H F EV
Sbjct: 610 ELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFL 669
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D
Sbjct: 670 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 729
Query: 645 E 645
+
Sbjct: 730 Q 730
Score = 138 (53.6 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 64/246 (26%), Positives = 111/246 (45%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A + G +VC + L
Sbjct: 225 YQVEGMEW-LRMLWENGINGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGPLSTLP 283
Query: 257 SWAEELERWLPFCLPADI-HLVFGHRNN---PVH-----LTRFPRVVVISYTMLHRLRKS 307
+W E +R+ P +P + H R +H L P VV+ S+ + R R +
Sbjct: 284 NWMSEFKRFTPE-IPLMLYHGAQQERRKLVRKIHGRQGSLKIHP-VVITSFEIAMRDRNA 341
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
+ W LIVDE H ++ + E +LL+GTP + +++
Sbjct: 342 LQSCFWKYLIVDEGHRIK-NMNCRLIRELKRFNADNK-----LLLTGTPLQNNLAELWSL 395
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+N L P + K F +++ D+ ++ + + L L+ +L ++RRLK
Sbjct: 396 LNFLLPDVFDDLK-SF-ESWFDITSITETAEDIIAKEKEQNILHMLHQILTP-FLLRRLK 452
Query: 428 QHLLVQ 433
+ ++
Sbjct: 453 SDVALE 458
Score = 40 (19.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVN 527
+ K+ G + L IHPV+ S A D N
Sbjct: 312 VRKIHGRQGSLKIHPVVITSFEIAMRDRN 340
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 172 (65.6 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 54/214 (25%), Positives = 100/214 (46%)
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAAC 239
DE ++ + P + + P+Q++GV + L + ++ADEMGLGKTLQ I+
Sbjct: 178 DESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGY 237
Query: 240 --FISA--GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--- 292
+I G LV+ P +W E+ RW P + ++ G + L +
Sbjct: 238 LRYIEKIPGPFLVIAPKSTLNNWLREINRWTP---DVNAFILQGDKEERAELIQKKLLGC 294
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRI 349
VV+ SY ++ R + + + +W +I+DE+H ++ +E R+
Sbjct: 295 DFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIK-----NEESMLSQVLREFTSRNRL 349
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
L++GTP + ++++ +N L P + A+ DF
Sbjct: 350 -LITGTPLQNNLHELWALLNFLLPDIFSDAQ-DF 381
Score = 132 (51.5 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 32/127 (25%), Positives = 61/127 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ ++LD ++++ + + RIDG+T DR A+ + + K
Sbjct: 519 SRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTT 578
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ +SA VV + +P LQA DRAHR GQ V ++ ++ +E +
Sbjct: 579 RAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILE 638
Query: 650 NLNKSLR 656
+ LR
Sbjct: 639 RATQKLR 645
Score = 37 (18.1 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 687 DRGSEDLTLDQVASSDQFQELMKVPESSEASD 718
+R ++ L LDQ+ L K +++ D
Sbjct: 638 ERATQKLRLDQLVIQQNRTSLKKKENKADSKD 669
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 151 (58.2 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 60/230 (26%), Positives = 100/230 (43%)
Query: 220 LIADEMGLGKTLQAIAIAAC--------FISAGS-------ILVVCPAILRLSWAEELER 264
++ D+MGLGKTLQ I I A F +GS L+VCP+ L W +EL
Sbjct: 1380 ILCDDMGLGKTLQTICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELST 1439
Query: 265 WLPFCLPADIHL-VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
+ PF L ++ R + VVV SY + +++ DW ++DE H
Sbjct: 1440 YAPF-LKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHV 1498
Query: 324 VRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
++ ++ + R++L SGTP + +++ + L PG LG K F
Sbjct: 1499 IKNARA-----KLTKAVKSLRSYHRLIL-SGTPIQNNVLELWSLFDFLMPGFLGTEK-TF 1551
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLL 431
+ + V+ + + + L + KQ + M+RRLK+ +L
Sbjct: 1552 QERF--VRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVL 1599
Score = 147 (56.8 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 44/176 (25%), Positives = 77/176 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
++++IF +LD V++ + + + ++R+DG+ P RQ AV F +
Sbjct: 1737 HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLL 1796
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
L+ + A V+F+E +P LQA DRAHR GQ VN+Y + +E
Sbjct: 1797 TTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKI 1856
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKT-DRGSEDLTLDQVASSD 702
+ S+ N + L I + + L++ + T D +D+ S D
Sbjct: 1857 MGLQRFKMNVASTVVNQQNAGLSSIGTDQI--LDLFNTTADEQQTVQNIDKEESED 1910
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 303 RLRKSMIE-QDWALLIV-DESHHVRCSKRTSEPEE 335
RL +S E +D L I DE +H+ C + + P E
Sbjct: 835 RLIESFFEVEDNDLTIQKDELYHLLCDQFATVPRE 869
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 162 (62.1 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 49/187 (26%), Positives = 91/187 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF ++LD +++F++ G ++R+DG+T RQ+ + F +
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTR 2119
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A VVF + +P++ QA+DR HR GQT V+IY ++ T +E N
Sbjct: 2120 SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE----N 2175
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLE--MSDKTDRGSEDLTLDQVASSDQFQELM 708
+ K N K L ++A+EG ++ +T R D+ L++ +SS +
Sbjct: 2176 ILKK-------ANQKR-MLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSSS----VP 2223
Query: 709 KVPESSE 715
PE E
Sbjct: 2224 SAPEEEE 2230
Score = 140 (54.3 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 52/215 (24%), Positives = 107/215 (49%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A G L++ P + L+W EL+RW P +
Sbjct: 640 ILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYY 699
Query: 276 LVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
R P V + SY ++ + ++ ++W LI+DE+ +++ K S+
Sbjct: 700 GAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFK--SQ 757
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ R +LL+GTP + +++ ++ L P + ++ +F + + + T
Sbjct: 758 RWQSLLNFNSQ----RRLLLTGTPLQNSLMELWSLMHFLMPHVF-QSHREFKEWFSNPLT 812
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+G Q++++G+ ++ L+ +L+ ++RR+K
Sbjct: 813 GM-IEGS--QEYNEGL-VKRLHKVLRP-FLLRRVK 842
Score = 44 (20.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
+ S+ D+ D++ + DEH +
Sbjct: 493 SSSQSDSVEDRSEDEEDEHSE 513
Score = 44 (20.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 462 NDSEKDATNDKTPKDSDEHDDSGA 485
+DS +D + D+ + S+E + SG+
Sbjct: 497 SDSVEDRSEDEEDEHSEEEETSGS 520
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 202 LPFQLEGV-RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P + E V R L + RCL D M T + +A F+S +IL+
Sbjct: 849 MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGH-FMSVINILM 895
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 148 (57.2 bits), Expect = 8.7e-16, Sum P(3) = 8.7e-16
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G+ + R+DG+T +R V F + +V
Sbjct: 536 DKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTM 595
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A VV + +P+ LQA DRA+R GQ V + + T +E +
Sbjct: 596 AGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLR 655
Query: 649 QNLNKSLRCVS-SATNGK--YDALQ 670
Q + L CV + N K ++A+Q
Sbjct: 656 QIYKQQLHCVVVGSENAKRYFEAVQ 680
Score = 95 (38.5 bits), Expect = 8.7e-16, Sum P(3) = 8.7e-16
Identities = 40/147 (27%), Positives = 68/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P + +W +EL+ W F + +H G+R + + R I+ T LR
Sbjct: 212 LIVAPLSVLYNWKDELDTWGYFRVTV-LH---GNRKDNELIRVKQRKCEIALTTYETLRL 267
Query: 307 SMIEQ---DWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ E +W+ +IVDE+H ++ K R +E + RI L +GT +
Sbjct: 268 CLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNV------RIGL-TGTILQNNMK 320
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG Y F K + D
Sbjct: 321 ELWCVMDWAVPGLLGSGTY-FKKQFSD 346
Score = 90 (36.7 bits), Expect = 8.7e-16, Sum P(3) = 8.7e-16
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 193 LPKSLLDVILPFQLEGVRF--G-LRRGGRCLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG RF G GG C++ D+MGLGKT+Q I+ A +
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVL 177
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 147 (56.8 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 43/169 (25%), Positives = 78/169 (46%)
Query: 220 LIADEMGLGKTLQAIAIAAC--FISA--GSILVVCPAILRLSWAEELERWLP----FCLP 271
++ADEMGLGKTLQ I+ ++ G L++ P +W E +W P L
Sbjct: 206 ILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLH 265
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
D N + RF V++ SY M+ R + ++ W +++DE+H ++ +
Sbjct: 266 GDKDTRADIVRNIILEARFD-VLITSYEMVIREKNALKRLAWQYIVIDEAHRIK-----N 319
Query: 332 EPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK 380
E R+ L++GTP + ++++ +N L P + G ++
Sbjct: 320 EQSALSQIIRLFYSKNRL-LITGTPLQNNLHELWALLNFLLPDIFGDSE 367
Score = 145 (56.1 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 52/231 (22%), Positives = 97/231 (41%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ ++LD ++++ + + RIDG+T +R A+ + N K
Sbjct: 505 KGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLL 564
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +A V+ + +P LQA DRAHR GQ V++Y F ++ +E
Sbjct: 565 TTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKV 624
Query: 648 WQNLNKSLRC------------VSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTL 695
+ + LR +S N K D L I + E K + + D +
Sbjct: 625 IERAAQKLRLDQLVIQQGTGKKTASLGNSKDDLLDMIQFGAKNMFEK--KASKVTVDADI 682
Query: 696 DQVASSDQ--FQELMKVPESSEASDFRAINTNDEITA-KMNDKLLEESKTD 743
D + + QEL +S D + N + +A + N K ++ D
Sbjct: 683 DDILKKGEQKTQELNAKYQSLGLDDLQKFNGIENQSAYEWNGKSFQKKSND 733
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 157 (60.3 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 56/217 (25%), Positives = 103/217 (47%)
Query: 220 LIADEMGLGKTLQAIAIAAC--FISA--GSILVVCPAILRLSWAEELERWLP----FCLP 271
++ADEMGLGKTLQ I+ +I G +V+ P +W E +W P L
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQ 220
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
D + ++ +F V++ S+ M+ R + ++ + W ++VDE+H ++ +
Sbjct: 221 GDKEQRASIIKDQLYTAKFD-VLITSFEMILREKSALQKFRWEYIVVDEAHRIK-----N 274
Query: 332 EPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA-KYDFAKTYCDV 390
E R+ L++GTP + ++++ +N L P + G + ++D A +
Sbjct: 275 EDSSLSKIIRLFYSRNRL-LITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNS 333
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ + + Q QD K V EL+ LL ++RR+K
Sbjct: 334 EELDEEEKQRRQD--KAV--SELHQLLSP-FLLRRVK 365
Score = 134 (52.2 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 33/127 (25%), Positives = 61/127 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +VLD ++++ + + RIDG+T DR A+ + + K
Sbjct: 470 SRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTT 529
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ +SA V+ + +P LQA DRAHR GQ V ++ F + +E +
Sbjct: 530 RAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLE 589
Query: 650 NLNKSLR 656
+ LR
Sbjct: 590 RAAQKLR 596
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 157 (60.3 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 56/217 (25%), Positives = 103/217 (47%)
Query: 220 LIADEMGLGKTLQAIAIAAC--FISA--GSILVVCPAILRLSWAEELERWLP----FCLP 271
++ADEMGLGKTLQ I+ +I G +V+ P +W E +W P L
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQ 220
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
D + ++ +F V++ S+ M+ R + ++ + W ++VDE+H ++ +
Sbjct: 221 GDKEQRASIIKDQLYTAKFD-VLITSFEMILREKSALQKFRWEYIVVDEAHRIK-----N 274
Query: 332 EPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA-KYDFAKTYCDV 390
E R+ L++GTP + ++++ +N L P + G + ++D A +
Sbjct: 275 EDSSLSKIIRLFYSRNRL-LITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAFDNQNS 333
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ + + Q QD K V EL+ LL ++RR+K
Sbjct: 334 EELDEEEKQRRQD--KAV--SELHQLLSP-FLLRRVK 365
Score = 134 (52.2 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 33/127 (25%), Positives = 61/127 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +VLD ++++ + + RIDG+T DR A+ + + K
Sbjct: 470 SRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTT 529
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ +SA V+ + +P LQA DRAHR GQ V ++ F + +E +
Sbjct: 530 RAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLE 589
Query: 650 NLNKSLR 656
+ LR
Sbjct: 590 RAAQKLR 596
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 161 (61.7 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 49/187 (26%), Positives = 90/187 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF ++LD +++F++ G ++R+DG+T RQ+ + F +
Sbjct: 2048 HRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTR 2107
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A VVF + +P++ QA+DR HR GQT V+IY ++ T +E N
Sbjct: 2108 SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE----N 2163
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLE--MSDKTDRGSEDLTLDQVASSDQFQELM 708
+ K N K L ++A+EG ++ +T R D+ L++ S +
Sbjct: 2164 ILKK-------ANQKR-MLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPPGSS----VS 2211
Query: 709 KVPESSE 715
VPE E
Sbjct: 2212 SVPEEEE 2218
Score = 140 (54.3 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 52/215 (24%), Positives = 107/215 (49%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A G L++ P + L+W EL+RW P +
Sbjct: 650 ILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYY 709
Query: 276 LVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
R P V + SY ++ + ++ ++W LI+DE+ +++ K S+
Sbjct: 710 GAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFK--SQ 767
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ R +LL+GTP + +++ ++ L P + ++ +F + + + T
Sbjct: 768 RWQSLLNFNSQ----RRLLLTGTPLQNSLMELWSLMHFLMPHVF-QSHREFKEWFSNPLT 822
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+G Q++++G+ ++ L+ +L+ ++RR+K
Sbjct: 823 GM-IEGS--QEYNEGL-VKRLHKVLRP-FLLRRVK 852
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 202 LPFQLEGV-RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P + E V R L + RCL D M T + +A F+S +IL+
Sbjct: 859 MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGH-FMSVINILM 905
Score = 37 (18.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
+ S+ D+ + + + DEH +
Sbjct: 497 SSSQSDSAEEHSEDEEDEHSE 517
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 181 (68.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 44/158 (27%), Positives = 78/158 (49%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
+ +++IF+ +VLD ++ ++ + F+R+DG+T RQ + F + K
Sbjct: 780 NERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLST 839
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ + A V+ + +P +QAEDRAHR GQT V++Y K+T +E+ +
Sbjct: 840 KSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRR 899
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTD 687
N L SS T +EI+ E + L+M + D
Sbjct: 900 LANTKLTLESSLTTDSEKIQKEISGELMKSLQMDGRVD 937
Score = 107 (42.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 53/221 (23%), Positives = 94/221 (42%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPADIHL 276
++ADEMGLGKT Q I+ A G LVV P+ +W E E++ P
Sbjct: 436 ILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKFCPSLRVESYSG 495
Query: 277 VFGHR-NNPVHL--TRFPRVVVISYTMLHRLR--KSMI-EQDWALLIVDESHHVRCSKRT 330
R N +L T F V+V +Y + R +S + +Q + + I DE H+++ R
Sbjct: 496 TQSERINKRYYLMDTDFD-VLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLK--NRM 552
Query: 331 SEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
SE + +L++GTP + ++ + + P + Y +
Sbjct: 553 SERYKHLMNIPANFR----LLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIY-KI 607
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
KT G + + + R+ ++ ++ RR K+++L
Sbjct: 608 KTTS--DGDIERAYLSQERISRAKTIMNPFIL-RRRKENVL 645
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 176 (67.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 808 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 867
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 868 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 927
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 928 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 984
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 985 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1034
Score = 113 (44.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 489 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 548
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 549 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 605
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 606 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 659
Query: 363 DIFHQI 368
+ H I
Sbjct: 660 SLLHFI 665
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 164 (62.8 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 60/228 (26%), Positives = 95/228 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
++ +IF +LD V+ + +K + ++R+DG+ PRDRQ V F +
Sbjct: 1647 HRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLL 1706
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
L+ + A V+F+E +P LQA DRAHR GQ VN+Y K T +E
Sbjct: 1707 TTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKI 1766
Query: 648 WQNLNK-SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
L K + S+ N + L + + L++ D D V S D E
Sbjct: 1767 -MGLQKFKMNIASTVVNQQNSGLASMDTHQL--LDLFDP----------DNVTSQDN--E 1811
Query: 707 LMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHN 754
+S A I +T K + L E K P++ ++ +N
Sbjct: 1812 EKNNGDSQAAKGMEDIANETGLTGKAKEAL-GELKELWDPSQYEEEYN 1858
Score = 137 (53.3 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 63/265 (23%), Positives = 113/265 (42%)
Query: 192 KLPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC--------F 240
KLP ++ + +Q +GV F + ++ D+MGLGKTLQ I I A +
Sbjct: 1263 KLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 241 ISAGSI-------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR- 292
S+ L++CP L W E +++ PF + +V V LT P+
Sbjct: 1323 EKTRSVESRALPSLIICPPSLTGHWENEFDQYAPF-----LKVVVYAGGPTVRLTLRPQL 1377
Query: 293 ----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXR 348
++V SY + + + ++ ++DE H ++ S+ + R
Sbjct: 1378 SDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQ-----SKLAKAVKEITANHR 1432
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
++L +GTP + +++ + L PG LG K F + + K + + +
Sbjct: 1433 LIL-TGTPIQNNVLELWSLFDFLMPGFLGTEKM-FQERFA--KPIAASRNSKTSSKEQEA 1488
Query: 409 RLEELNVLLKQTV--MIRRLKQHLL 431
+ L L KQ + M+RRLK+ +L
Sbjct: 1489 GVLALEALHKQVLPFMLRRLKEDVL 1513
Score = 44 (20.5 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 131 KLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKL----SHSIDTGR 172
KL D+ VL LKN A +E W ++V KL HSI + R
Sbjct: 519 KLCDHQEVLDILKNKA-LEHPS-EWSFKSLVPKLYPFLRHSISSVR 562
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 146 (56.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 43/171 (25%), Positives = 80/171 (46%)
Query: 220 LIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKTLQ I++ A LV+ P +WA E ++W P +
Sbjct: 154 ILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLI 213
Query: 276 LVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
RN + P+ V +Y M+ +++ + + +W +I+DE+H ++ +E
Sbjct: 214 GDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIK-----NE 268
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
+ R+ L++GTP + ++++ +N L P + + DF
Sbjct: 269 KSKLSETVRELNSENRL-LITGTPLQNNLHELWALLNFLLPDIFTSSD-DF 317
Score = 143 (55.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 43/192 (22%), Positives = 85/192 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ ++LD +++F + + R+DG+T DR +A+ ++ + K
Sbjct: 450 QGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFML 509
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P LQA DRAHR GQ V ++ ++T DE
Sbjct: 510 TTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERI 569
Query: 648 WQNLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDL--TLDQVASSDQF 704
+ LR + G+ Q+ +G +M G+E + D S D
Sbjct: 570 IEKAEAKLRLDNIVIQQGRMSEAQKTLGKG----DMISMIRHGAEQVFAAKDSTISDDDI 625
Query: 705 QELMKVPESSEA 716
+++ E A
Sbjct: 626 DTILEKAEVKTA 637
Score = 45 (20.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 357 SLSRPYDIFHQIN-MLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVRLEEL 413
++S D+ +++ +L P LL + K D K+ K V+ Y G ++ +++ V ++++
Sbjct: 325 AMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDI 384
Query: 414 NVL 416
+++
Sbjct: 385 DII 387
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 159 (61.0 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 49/227 (21%), Positives = 103/227 (45%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
+++++F +++D +++F+ K + ++R+DG+T +RQ + F ++
Sbjct: 837 HRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLST 896
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQ + V I D+ +E +
Sbjct: 897 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILE 956
Query: 650 NLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
++ L GK+D + A E ++L+ + D D + D+ E++
Sbjct: 957 RAHQKLDIDGKVIQAGKFDN-KSTAEEQEAFLKRLLEADANGADNEENDSLDDDELNEIL 1015
Query: 709 KVPESSEASDFRAINTNDEITAKM--NDKLLEESKTDHSPTETDDHH 753
E + F +++ + + K+ +L+E+ + TE HH
Sbjct: 1016 ARSEEEKVL-FASMD-EERKSEKVPYKSRLIEKDELPAVFTEDISHH 1060
Score = 132 (51.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 48/218 (22%), Positives = 104/218 (47%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
++ADEMGLGKT+Q+I++ I L++ P +W E E+W P + ++
Sbjct: 523 ILADEMGLGKTIQSISLVTYLIEKKHENKFLIIVPLSTITNWTLEFEKWAP-SIKVIVYK 581
Query: 277 VFGHRNNPVHLT-RFP--RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
+ + R+ +V++ +Y + R R + + ++ +I+DE H ++ ++
Sbjct: 582 GSQQQRRSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMK----NAQS 637
Query: 334 EEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YD--FAKTYCDV 390
+ R++L +GTP + +++ +N + PG+ K +D F + +
Sbjct: 638 KLSQTLRTYYKTKNRLIL-TGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANT 696
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ + L ++ S V + L+ +L+ ++RRLK+
Sbjct: 697 GAQEKIE--LTEEESLLV-IRRLHKVLRP-FLLRRLKK 730
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 158 (60.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 31/122 (25%), Positives = 66/122 (54%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
ID+ ++++I+ +++ +E+++ K ++R+DG+T R+ V ++Q + E+
Sbjct: 1246 IDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEIF 1305
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
L+ +SA V+F + +P++ QA DRAHR GQT V ++ ++T
Sbjct: 1306 IFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTI 1365
Query: 644 DE 645
++
Sbjct: 1366 EQ 1367
Score = 133 (51.9 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 63/255 (24%), Positives = 120/255 (47%)
Query: 194 PKSLLDVILPFQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P L + +QL+G+ + L +G ++ADEMGLGKT+Q+I++ A G
Sbjct: 665 PNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPF 724
Query: 247 LVVCPAILRLSWAEELERWLP-F-CLP-----ADIHLV--FGHRNNPVHLTRFP-RVVVI 296
LVV PA +W +E+ +++P F LP D ++ F R + + P V+V
Sbjct: 725 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVT 784
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP 356
SY ++ + W +I+DE+ ++ S + R+ LL+GTP
Sbjct: 785 SYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSR-----WKSLLNLTCRNRL-LLTGTP 838
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY-QGQLFQDFSKGVRLEELNV 415
+ +++ ++ + P + +F+ + K ++ + Q D + L L++
Sbjct: 839 IQNSMQELWALLHFIMPSIFDSHD-EFSDWFA--KDIESHAQSNTSLDEQQ---LRRLHM 892
Query: 416 LLKQTVMIRRLKQHL 430
+LK M+RR+K+++
Sbjct: 893 ILKP-FMLRRIKKNV 906
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 176 (67.0 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 795 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 854
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 855 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 914
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 915 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 971
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 972 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1021
Score = 116 (45.9 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 49/187 (26%), Positives = 77/187 (41%)
Query: 204 FQLEGVRF----GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
+QLEG+ + R ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 475 YQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTL 534
Query: 256 LSWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRL 304
SW E E W P ++ + G RN +H R ++ +Y +L +
Sbjct: 535 TSWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD 591
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRP 361
+ + +WA L VDE+H R + +L++GTP SL
Sbjct: 592 KTVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKEL 645
Query: 362 YDIFHQI 368
+ + H I
Sbjct: 646 WSLLHFI 652
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 158 (60.7 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 46/225 (20%), Positives = 101/225 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF K+LD ++ F++ G ++R+DG+T RQ + F +
Sbjct: 1675 HRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTR 1734
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+F + +P++ QA+DR HR GQT V+IY ++ T + + +
Sbjct: 1735 SGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKK 1794
Query: 651 LNKSLRCVSSAT--NGKYDA--LQEIAVEGVSYLEMSDKTDRGSEDL-TLDQVASSDQFQ 705
N+ R +S G + + ++ + +E S++ + E D++ ++
Sbjct: 1795 ANQK-RMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQEKSENKDRIVATTTLS 1853
Query: 706 ELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETD 750
+ +E RA + A +++ ++ +KT + D
Sbjct: 1854 DTPSTVVETEKQSLRAFE--HALAAAEDEQDVQATKTAKAEVAAD 1896
Score = 140 (54.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 54/219 (24%), Positives = 111/219 (50%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLP-FCLPADI 274
++ADEMGLGKT+Q IA+ A A G L+V P+ + L+W E ++W P F +
Sbjct: 936 ILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYY 995
Query: 275 HLVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
+ V T+ P V + SY ++ + ++S + W LI+DE+ +++ K S
Sbjct: 996 GSQKERKLKRVGWTK-PNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFK--S 1052
Query: 332 EPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+ + R +LL+GTP + +++ ++ L P + + +F + + +
Sbjct: 1053 QRWQLLLNFSTE----RRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHR-EFKEWFSNPM 1107
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
T +G + ++++ + + L+ +++ ++RRLK+ +
Sbjct: 1108 TGM-IEGNM--EYNETL-ITRLHKVIRP-FLLRRLKKEV 1141
Score = 43 (20.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 463 DSEKDATNDKTPKDSDEHDDSGA 485
D E D+ +D T DS E + A
Sbjct: 802 DPELDSDDDSTAVDSTEESEDAA 824
Score = 40 (19.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
S + + + E+D + KT D +E D+
Sbjct: 816 STEESEDAATEDEEDLSTVKTDTDMEEQDE 845
Score = 39 (18.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 460 VINDSEKDATNDKTPKDSDEHD 481
++ + + A +TP DSD+ +
Sbjct: 716 LMKEEQSSAIKTETPDDSDDSE 737
Score = 38 (18.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 201 ILPFQLEGVRF 211
I PFQ++G+ F
Sbjct: 1209 ISPFQMDGITF 1219
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 152 (58.6 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 39/177 (22%), Positives = 76/177 (42%)
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
EW S + A + + + + K I+F+ +LD +Q + G V++ G+ P
Sbjct: 676 EWRSSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSP 735
Query: 567 RDRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+ R + + F + EV+ L+ A V ++ +PS+ Q+ DR HR
Sbjct: 736 QQRDNTIKHFMENTEVEVFLVSLKAGGVALNLCEASQVFLMDPWWNPSVEWQSMDRVHRI 795
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMS 683
GQ + I FC +D+ + + K + + N A+ + + + +L M+
Sbjct: 796 GQKRPIRITRFCIEDSIESKIIELQEKKANMIHATINNDDAAISRLTPDDLQFLFMN 852
Score = 133 (51.9 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 41/123 (33%), Positives = 70/123 (56%)
Query: 194 PKSLLDVILPFQLEGVRFGLRR------GGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
P + +LPFQLEG+ + +++ GG ++ADEMG+GKT+Q I + S G L
Sbjct: 233 PPGMTIKLLPFQLEGLNWLIKQEDGEFNGG--ILADEMGMGKTIQTIGLFMHDRSKGPNL 290
Query: 248 VVCPAILRLSWAEELERWL-PFCLPADIHLVFG-HRNNPVH-LTRFPRVVVISYTMLHRL 304
V+ P + + W E+E+ P L + L G +R+N + L+++ V++ SY++L +
Sbjct: 291 VIGPTVALMQWKNEIEKHTEPGMLK--VLLYHGSNRSNSIQELSQYD-VILTSYSVLESV 347
Query: 305 -RK 306
RK
Sbjct: 348 YRK 350
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 173 (66.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 67/220 (30%), Positives = 99/220 (45%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRF------GLRRGGRC--LIADEMGLGKTLQAIAI 236
VVD +I P L+ + P Q EG+ F G+R GRC ++ADEMGLGKTLQ I++
Sbjct: 283 VVDVVID--PH-LVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEMGLGKTLQCISL 339
Query: 237 AACFISAG---------SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
G L+V P L +W +E ++WL + H+
Sbjct: 340 IWTLQCQGPYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDHKVEEFTK 399
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
+ F V++ISY ML R + + LLI DE H ++ S +
Sbjct: 400 SPFYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTI-----KTTTALISLSCEK 454
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
RI+L +GTP + + F I+ + PG+LG + K Y
Sbjct: 455 RIIL-TGTPVQNDLQEFFTLIDFVNPGILGSLSA-YRKIY 492
Score = 112 (44.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF--QLSNEV 582
++ P + K+++ +++ + LD +QE G + R+DG T RQ V F + S++
Sbjct: 656 ELRP-AEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSKYSSDF 714
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
L+ +++ ++ +P+ +QA R R GQ V+IY T
Sbjct: 715 -IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGT 773
Query: 643 TDESHWQ 649
+E +Q
Sbjct: 774 IEEKIYQ 780
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 176 (67.0 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 806 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 865
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 866 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 925
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 926 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 982
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 983 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1032
Score = 113 (44.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 487 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 547 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 603
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 604 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELW 657
Query: 363 DIFHQI 368
+ H I
Sbjct: 658 SLLHFI 663
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 155 (59.6 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 47/186 (25%), Positives = 91/186 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKXXXXXX 589
++++IF+ +++L+ + E++S +G + R+DG T+P R+ ++ F +
Sbjct: 721 HRVLIFSQMVRMLNILGEYMSLRGYNYQRLDG-TIPASVRRVSIDHFNAPDSPDFVFLLS 779
Query: 590 XXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+ + +P LQA RAHR GQ + VN+Y F +KDT +E
Sbjct: 780 TRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDIL 839
Query: 649 QNLNKSL----RCVS--------SATNGKYDA--LQEIAVEGVSYLEMSDKTDRGSEDLT 694
+ + + +S ++ N KYDA L I G S + + + + E++
Sbjct: 840 ERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKLENMN 899
Query: 695 LDQVAS 700
LD + S
Sbjct: 900 LDDILS 905
Score = 134 (52.2 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 45/190 (23%), Positives = 79/190 (41%)
Query: 201 ILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAI 253
I FQL G+ + R ++ADEMGLGKT+Q + + + + G L+V P
Sbjct: 390 IRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLS 449
Query: 254 LRLSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPR-----VVVISYTMLHRL 304
+W E L W P C + R +L+ R +++ +Y + +
Sbjct: 450 TVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKD 509
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDI 364
++ + W L +DE+H ++ S E +L++GTP + ++
Sbjct: 510 KQELNNIRWQYLAIDEAHRLKNS------ESSLYETLSQFRTANRLLITGTPLQNNLKEL 563
Query: 365 FHQINMLWPG 374
+N L PG
Sbjct: 564 ASLVNFLMPG 573
Score = 49 (22.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEI---AVEGVSYLEMSDKTDRGSEDLTLD 696
K T ++ +N+N L + S + D+ ++ ++ G +L+ + TD +EDL D
Sbjct: 887 KATENQKKLENMN--LDDILSHAEDR-DSSNDVGGASMGGEEFLKQFEVTDYKAEDLNWD 943
Query: 697 QVASSDQFQEL 707
+ ++ + +
Sbjct: 944 DIIPEEEMERI 954
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 170 (64.9 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 58/222 (26%), Positives = 109/222 (49%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
++++IF+ +++LD + E++S +G F R+DG+T RQ A+ F +++
Sbjct: 956 HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLST 1015
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A VV + +P LQA RAHR GQ VNIY F + +E +
Sbjct: 1016 RAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILE 1075
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQF--QEL 707
+ + + +Q++ EG LE + T +GS + +++++ +F +EL
Sbjct: 1076 RAKRKMVL-------DHLVIQKLNAEG--RLEKRE-TKKGS-NFDKNELSAILRFGAEEL 1124
Query: 708 MKVPESSEASDFRAINTN-DEITAKMNDKLLEESKTDHSPTE 748
K ++ E S R ++ + DEI + +EE TD + E
Sbjct: 1125 FKEDKNDEESKKRLLSMDIDEILERAEQ--VEEKHTDETEHE 1164
Score = 131 (51.2 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 50/204 (24%), Positives = 93/204 (45%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ F + ++ADEMGLGKT+Q++++ + G LVV P
Sbjct: 628 YQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLA 687
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF----------P---RVVVISYTMLHR 303
+WA+E +WLP +I + G R + ++ P ++ +Y ++ +
Sbjct: 688 NWAKEFRKWLP---GMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVLK 744
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYD 363
+ + + W L+VDE+H ++ S E +L++GTP + +
Sbjct: 745 DKAVLSKIKWIYLMVDEAHRLKNS------EAQLYTALLEFSTKNKLLITGTPLQNSVEE 798
Query: 364 IFHQINMLWPGLLGKAKYDFAKTY 387
++ ++ L PG K K +F + Y
Sbjct: 799 LWALLHFLDPGKF-KNKDEFVENY 821
Score = 49 (22.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
S++D +D+ SD DD G + K+ Q G K S E S H
Sbjct: 279 SDEDPESDEEIDLSDYEDDYGT--KKPKVRQQSKGFRKSSAGLERKSFH 325
Score = 45 (20.9 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 512 HPVIAES--DG-AADIDVNPRSNKMIIFAHHLKVLD 544
HP + ES G DI+ N + +K+I+ + L +LD
Sbjct: 910 HPFLFESADHGYGGDINDNSKLDKIILSSGKLVILD 945
Score = 41 (19.5 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
F D +KGVR +++ LL V +++ H
Sbjct: 883 FHDLNKGVRGNQVS-LLNIVVELKKCCNH 910
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 463 DSEK--DATNDKTPKDSDEHDDS 483
DSE D N K KD E +D+
Sbjct: 397 DSEDIDDGKNRKNQKDDIEEEDA 419
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 163 (62.4 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 40/145 (27%), Positives = 76/145 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1113 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLS 1172
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1173 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1232
Query: 649 QNLN-KS--LRCVSSATNGKYDALQ 670
Q KS R V S N K D L+
Sbjct: 1233 QRAKEKSEIQRMVISGGNFKPDTLK 1257
Score = 127 (49.8 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 57/236 (24%), Positives = 114/236 (48%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 523 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 582
Query: 257 SWAEELERWLP-F-CLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLHRLRKSMIEQDW 313
+W +E R++P F LP + + ++ P VV+ SY ++ + K W
Sbjct: 583 NWHQEFTRFVPKFKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKW 642
Query: 314 ALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWP 373
+++DE+ ++ S R+ LL+GTP + +++ ++ + P
Sbjct: 643 QYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWALLHFIMP 696
Query: 374 GLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L + +F + + D+++ + + ++ +L L+++LK M+RR+K+
Sbjct: 697 TLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRIKK 745
Score = 45 (20.9 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVY 96
PE F R E SP S+ P I F+Y
Sbjct: 815 PELFE-RQETWSPFHISLKPYEISKFIY 841
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 154 (59.3 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 32/128 (25%), Positives = 67/128 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
R ++++IF+ ++LD +++++ +G + RIDGNT +R +++ ++ K
Sbjct: 510 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLL 569
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC ++ +
Sbjct: 570 STRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKV 629
Query: 648 WQNLNKSL 655
+ K L
Sbjct: 630 IERAYKKL 637
Score = 132 (51.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 51/201 (25%), Positives = 91/201 (45%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P + + +QL G+ + +R G ++ADEMGLGKTLQ I++ A I
Sbjct: 187 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 246
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYT 299
+VV P +W E+ R+ P L A L G+ H+ +F + V S+
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPV-LRAVKFL--GNPEERRHIREELLVAGKFD-ICVTSFE 302
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
M + + ++ W +I+DE+H ++ +E R+ L++GTP +
Sbjct: 303 MAIKEKTTLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQN 356
Query: 360 RPYDIFHQINMLWPGLLGKAK 380
++++ +N L P + A+
Sbjct: 357 NLHELWALLNFLLPEVFSSAE 377
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 149 (57.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 68/255 (26%), Positives = 111/255 (43%)
Query: 197 LLDVILPFQLEGVRF------GLRR-GGR-CLIADEMGLGKTLQAIAIAAC------FIS 242
L V+ P Q+EGV+F G R GG CL+ADEMGLGKTL I F+
Sbjct: 191 LAKVLRPHQVEGVKFMYECLMGYRGFGGHGCLLADEMGLGKTLMTITTIWTLLKQNPFME 250
Query: 243 AGSI----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-----V 293
G++ LVVCP L +W +E +WL + L N + F + V
Sbjct: 251 KGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMSNEKQDILNFGKLNVYQV 310
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLS 353
+V++Y L + + LL+ DE H ++ S + +IVL +
Sbjct: 311 LVVNYEKLVAHFDELSAVKFDLLVCDEGHRLKNSAN-----KVLNNLIKLNIPKKIVL-T 364
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKY---DFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP + + I+ L PG+L + K +F + + + ++ + +G +
Sbjct: 365 GTPIQNELVEFHTLISFLNPGVLPELKLFQRNFITPISRARDINCFDPEVKK---RGEEI 421
Query: 411 EELNVLLKQTVMIRR 425
+ + L Q+ ++RR
Sbjct: 422 SQQLIELTQSFILRR 436
Score = 134 (52.2 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 46/215 (21%), Positives = 89/215 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+++ K+++ +++ K LD +++ + + + F R+DG+T R V+ F + ++
Sbjct: 527 LEIASLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSKLVNQFNTNPDIN 586
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
++ A ++ + +P+ LQ+ R HR GQ IY
Sbjct: 587 VFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQLKPCFIYRLFTTGCI 646
Query: 644 DESHWQNL---NK-SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
DE +Q NK S + + + K D ++ + E+ T + DL L+ V
Sbjct: 647 DEKIFQRQLVKNKLSSKFLDNDATSKSDVFDNDDLKNI--FEIDTSTISNTHDL-LECVC 703
Query: 700 SSDQFQELMKVPESSEASDFRAINTNDEITAKMND 734
D E SE +A T E+ K++D
Sbjct: 704 EGDGSMLSQPTIEESEPPPKQAWVTALELKKKIDD 738
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 149 (57.5 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 52/249 (20%), Positives = 108/249 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKXXXXXX 589
+++++F ++ V++F++ I ++R+DG+T P +R + + F N E
Sbjct: 700 HRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLST 759
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P +QA+DRAHR GQ + V ++ ++ +E
Sbjct: 760 RAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILA 819
Query: 650 NLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
L GK+D + E LE KT+ SE+ ++V + + +++
Sbjct: 820 AARYKLNVDEKVIQAGKFDN-RSTGAERREILENIIKTENESEED--EEVPNDEDINDIL 876
Query: 709 KVPESSEASDFRAINTN---DEITAKMNDKLLEESKTDHSPTETDDHHNNV--SQYTGRI 763
E E F+ ++ +E K +L+ E + D + + ++ GR+
Sbjct: 877 SRSEE-EFELFQKMDQERFENEQAQKAKPRLVGEDEIPRDILRAADETDYIEKAKEEGRV 935
Query: 764 HLYSCVPGT 772
+PG+
Sbjct: 936 PYLEVMPGS 944
Score = 139 (54.0 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 53/242 (21%), Positives = 114/242 (47%)
Query: 203 PFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILR 255
P+Q++G+ + + L +ADEMGLGKT+Q IA + ++G LV+ P
Sbjct: 368 PYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTV 427
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNN-----PVHLTRFPRVVVISYTMLHRLRKSM 308
+W E ++W A++HL+ G + P+ + V++ ++ + R + +
Sbjct: 428 PNWQNEFDKWA-----ANVHLIAYKGPKETRKVFEPIIKSGKFNVLLTTFEYVIREKALL 482
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
+ W +I+DE H ++ ++ + R +L++GTP ++ +++ +
Sbjct: 483 GKLRWKYMIIDEGHRLK-----NQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALL 537
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
N L P + F + + G + +L Q+ + + + L+ +L+ ++RRLK+
Sbjct: 538 NFLLPSIFSSCS-TFEQWFNAPFATTGEKVELTQEETMLI-IRRLHKVLRP-FLLRRLKK 594
Query: 429 HL 430
+
Sbjct: 595 EV 596
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 459 GVINDSEKDATNDKTPKDSDEHDD 482
GV + + + DK D DE+++
Sbjct: 307 GVAEEDKVKSILDKARNDDDEYEN 330
>UNIPROTKB|H7C1I3 [details] [associations]
symbol:SMARCAL1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC098820 HGNC:HGNC:11102
ProteinModelPortal:H7C1I3 Ensembl:ENST00000445153 Uniprot:H7C1I3
Length = 162
Score = 204 (76.9 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 45/120 (37%), Positives = 75/120 (62%)
Query: 209 VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPF 268
V F + +GGR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + RWLP
Sbjct: 2 VNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPS 61
Query: 269 CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
P I++V ++ LT + ++S+ +L +L K + + + ++I+DESH ++ S+
Sbjct: 62 LSPDCINVVVTGKDR---LTA-GLINIVSFDLLSKLEKQL-KTPFKVVIIDESHFLKNSR 116
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 174 (66.3 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 68/241 (28%), Positives = 106/241 (43%)
Query: 205 QLEGVRF--GLRRGGRC--LIADEMGLGKTLQAIA-IAACFISA--GSILVVCPAILRLS 257
Q EGV F L R GR ++AD+MGLGKT+Q IA ++ F S +L++ P L S
Sbjct: 84 QREGVAFLYRLHREGRPGGILADDMGLGKTIQIIAFLSGMFDSELIRHVLLIMPTTLVSS 143
Query: 258 WAEELERWLPFCLPADIHLVFG--HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE---QD 312
W E RW P + H N + R +V+ SY ML K + QD
Sbjct: 144 WLAEFARWTPGLRVKEFHGTSKTERTRNLEKIQRKNGIVITSYQMLINNWKQLASCHGQD 203
Query: 313 --WALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINM 370
W +I+DE+H ++C P +LL+GTP + +++ +
Sbjct: 204 FVWDYIILDEAHKIKC------PSNKTTKCVYAIPAKHRLLLTGTPLQNNLQEMWSLFDF 257
Query: 371 LWPG-LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
G LLG AK F Y + T + + + G+++ E + + + +RR K
Sbjct: 258 ACQGSLLGTAK-TFRMEYENPITRAREKDATVGEKALGLKISENLMTIIKPYFLRRTKDD 316
Query: 430 L 430
+
Sbjct: 317 I 317
Score = 103 (41.3 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 24/98 (24%), Positives = 49/98 (50%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN-TLPRDRQSAVHSFQLSNEVKXXXXXX 589
++ ++F+ K+LD ++ +S + +RIDG T +R+ +++FQ + +
Sbjct: 463 HRTLVFSQSRKMLDIIERVLSSRQFKIMRIDGTVTHLTEREKRINAFQSNKDYSVFLLTT 522
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
+ ++A VV + +P+ QA DRA+R G
Sbjct: 523 QVGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIG 560
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 176 (67.0 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 775 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 834
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 835 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 894
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 895 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 951
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 952 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1001
Score = 113 (44.8 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 456 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 515
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 516 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 572
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 573 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELW 626
Query: 363 DIFHQI 368
+ H I
Sbjct: 627 SLLHFI 632
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 176 (67.0 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 809 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 868
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 869 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 928
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 929 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 985
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 986 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1035
Score = 113 (44.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 490 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 549
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 550 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 606
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 607 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELW 660
Query: 363 DIFHQI 368
+ H I
Sbjct: 661 SLLHFI 666
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 176 (67.0 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 808 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 867
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 868 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 927
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 928 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 984
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 985 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1034
Score = 113 (44.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 489 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 548
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 549 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 605
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 606 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 659
Query: 363 DIFHQI 368
+ H I
Sbjct: 660 SLLHFI 665
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 176 (67.0 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 819 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 878
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 879 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 938
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 939 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 995
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 996 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1045
Score = 113 (44.8 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 500 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 559
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 560 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 616
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 617 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELW 670
Query: 363 DIFHQI 368
+ H I
Sbjct: 671 SLLHFI 676
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 151 (58.2 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G+ + R+DG+T +R V F S +V
Sbjct: 523 DKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTM 582
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A V+ + +P+ LQA DRA+R GQ V + + T +E +
Sbjct: 583 AGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLR 642
Query: 649 QNLNKSLRCVS-SATNGK--YDALQ 670
Q + L CV + N K ++A+Q
Sbjct: 643 QVYKQQLHCVVVGSENAKRYFEAVQ 667
Score = 90 (36.7 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P + +W +EL+ W F + +H G + + L R I+ T LR
Sbjct: 199 LIVAPLSVLYNWKDELDTWGYFRVTV-LH---GSKKDNELLRLKQRKCEIALTTYETLRL 254
Query: 307 SMIEQ---DWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ E +W+ +IVDE+H ++ K R +E + RI L +GT +
Sbjct: 255 CLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKV------RIGL-TGTVLQNNMK 307
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG ++ F K + D
Sbjct: 308 ELWCVMDWAVPGLLG-SRIHFKKQFSD 333
Score = 84 (34.6 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR--GGR-CLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG +F R GR C++ D+MGLGKT+Q I+ A +
Sbjct: 114 IPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVL 165
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 160 (61.4 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 35/134 (26%), Positives = 68/134 (50%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF ++LD +++F++ G ++R+DG+T RQ+ + F +
Sbjct: 2060 HRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTR 2119
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A VVF + +P++ QA+DR HR GQT V+IY ++ T +E+ +
Sbjct: 2120 SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKK 2179
Query: 651 LNKSLRCVSSATNG 664
N+ A G
Sbjct: 2180 ANQKRMLGDMAIEG 2193
Score = 140 (54.3 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 52/215 (24%), Positives = 107/215 (49%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A G L++ P + L+W EL+RW P +
Sbjct: 647 ILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYY 706
Query: 276 LVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
R P V + SY ++ + ++ ++W LI+DE+ +++ K S+
Sbjct: 707 GAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFK--SQ 764
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ R +LL+GTP + +++ ++ L P + ++ +F + + + T
Sbjct: 765 RWQSLLNFNSQ----RRLLLTGTPLQNSLMELWSLMHFLMPHVF-QSHREFKEWFSNPLT 819
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+G Q++++G+ ++ L+ +L+ ++RR+K
Sbjct: 820 GM-IEGS--QEYNEGL-VKRLHKVLRP-FLLRRVK 849
Score = 48 (22.0 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 728 ITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRP 778
++ ++ E +H+P T HH + R C P D PRP
Sbjct: 2395 VSERLRGARAETQGANHTPV-TSTHHTRSTSTPPR-----CSPARDRVPRP 2439
Score = 47 (21.6 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 677 VSYLEMSDKT-DRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDK 735
V L MS+K S + A S + +VPE +EA+ + +E+ A ++
Sbjct: 2591 VEILPMSEKNLSLASSAPSPTLAAGSVPNGQEQEVPEPAEATILSVLPDGEEVPACLS-- 2648
Query: 736 LLEESKTDHSPTETDD 751
E SK + P+ D
Sbjct: 2649 --ESSKLELPPSAASD 2662
Score = 42 (19.8 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 55 PKSALADPNSTTQLP--ENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECL 103
P + LA P+S LP + + + + S TPLA + P L
Sbjct: 1602 PTAILAPPSSLAPLPVLAPSQTSIPVLASSSTPGTPLASASSLVPAPAPAL 1652
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 202 LPFQLEGV-RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P + E V R L + RCL D M T + +A F+S +IL+
Sbjct: 856 MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGH-FMSVINILM 902
Score = 39 (18.8 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
+ S+ D+ +++ + DEH +
Sbjct: 499 SSSQSDSAEEQSEDEEDEHSE 519
Score = 37 (18.1 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPES 713
SS + D + +A + LE + ED+ A ++Q EL + E+
Sbjct: 2220 SSVPSAPEDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2274
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 146 (56.5 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 50/203 (24%), Positives = 90/203 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +++LD + +++ KG F R+DG R+ A+ F
Sbjct: 691 HRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLST 750
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ +A V+ + +P LQA RAHR GQ + V++Y F +KDT +E +
Sbjct: 751 RAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVEEQILE 810
Query: 650 NLNKSL----RCVS------SATNGKY-----DALQEIAVEGVSYLEMSDKTDRGSEDLT 694
K + +S SA NG + L +I G + + + E+L
Sbjct: 811 RARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKFGAGTMFKENNNQQKLENLN 870
Query: 695 LDQVASSDQFQELMKVPESSEAS 717
LD V S ++ + PE E++
Sbjct: 871 LDDVLS--HAEDHVTTPELGESN 891
Score = 145 (56.1 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 60/224 (26%), Positives = 92/224 (41%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F R ++ADEMGLGKT+Q +A + I A G LVV P
Sbjct: 365 FQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVP 424
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT----------RFPR--VVVISYTMLHRL 304
+W E E+W P D++ V+ N T R P+ V++ +Y + +
Sbjct: 425 AWQETFEKWAP-----DVNCVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKD 479
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDI 364
+ + W L VDE+H R E +L++GTP + ++
Sbjct: 480 KNELGAFKWQFLAVDEAH------RLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKEL 533
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
N L PG K+ + D +T+ Q Q +D K +
Sbjct: 534 AALCNFLMPG-----KFTIDQEI-DFETIDSEQEQYIKDLQKKI 571
Score = 45 (20.9 bits), Expect = 5.3e-15, Sum P(3) = 5.3e-15
Identities = 17/67 (25%), Positives = 24/67 (35%)
Query: 725 NDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFR 784
+D + N LE T D +V + G +HL R LF R
Sbjct: 1163 DDPLLGLQNKLFLENPAAGKDATANQDGKESVKKVPGSVHL-------GRRVDYLFTLLR 1215
Query: 785 PEELDNT 791
EE D++
Sbjct: 1216 DEESDSS 1222
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 23/119 (19%), Positives = 44/119 (36%)
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+D Q + L+ SP ++ + + + + + I D E + + K+
Sbjct: 556 IDSEQEQYIKDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNY 615
Query: 656 RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESS 714
+++ G +L I E D G+ED LD+ S + L + SS
Sbjct: 616 AALNAGNRGSQISLLNIMSELKKASNHPYLFD-GAEDKVLDKAGSPSRENTLKGIVMSS 673
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 21/83 (25%), Positives = 34/83 (40%)
Query: 463 DSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522
D +D DK S E+ G GK+ E +++L +E H V+ S
Sbjct: 647 DGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLR--KEG---HRVLIFSQMVR 701
Query: 523 DIDVNPRSNKMIIFAHHLKVLDG 545
+D+ + M I + + LDG
Sbjct: 702 MLDI--LGDYMFIKGYQFQRLDG 722
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 161 (61.7 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 57/256 (22%), Positives = 113/256 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++ +IF K+LD +Q F+S G + R+DG T RQ+ + F +V
Sbjct: 1205 HRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTR 1264
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+F + +P++ QA+DR HR GQT V+IY ++ T +E+ +
Sbjct: 1265 SGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRK 1324
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-MK 709
+ R A + + E + S ++ D E + VA++ +E+ +
Sbjct: 1325 ATQKRRLGELAID-EAGFTPEFFKQSDSIRDLFD--GENVEVTAVADVATTMSEKEMEVA 1381
Query: 710 VPESSEASDFRA----INTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHL 765
+ + + +D A + + A+ ++K L E D+ + + Q I
Sbjct: 1382 MAKCEDEADVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQLKPIER 1441
Query: 766 YSCVPGTDSRPRPLFE 781
Y+ + +++ +P FE
Sbjct: 1442 YA-INFLETQYKPEFE 1456
Score = 130 (50.8 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 55/221 (24%), Positives = 105/221 (47%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A + SI L+V P + L+W E ++W P I
Sbjct: 580 ILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCP---ALKIL 636
Query: 276 LVFGHRNNPVHLTRF---PR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
FG + P V + SY + + ++ ++ W LI+DE+ +++ K
Sbjct: 637 TYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWK- 695
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
S+ + R +LL+GTP + +++ ++ L P + DF + +
Sbjct: 696 -SQRWQALLNVRAR----RRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHD-DFKDWFSN 749
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
T +G + +F+ + + L+ +L+ ++ RRLK+ +
Sbjct: 750 PLTGM-MEGNM--EFNAPL-IGRLHKVLRPFIL-RRLKKEV 785
Score = 38 (18.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
+VS+ + + +D + K P E DD K +E
Sbjct: 354 LVSSSKSPSIASDRDDKDEEFKAPGSDSESDDEQTIANAEKSQKKE 399
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 175 (66.7 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 806 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 865
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 866 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 925
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 926 IERAKKKM-VLDHLVIQRMDTTGRTILENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 982
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 983 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1032
Score = 113 (44.8 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 487 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 547 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 603
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 604 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 657
Query: 363 DIFHQI 368
+ H I
Sbjct: 658 SLLHFI 663
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 174 (66.3 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 58/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 813 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 872
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 873 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 932
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 933 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 989
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
+ P+ + + R T + E++ D+LL + K + T D+
Sbjct: 990 IEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1039
Score = 114 (45.2 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 494 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 553
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 554 SWQREFEIWAP---EVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 610
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 611 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 664
Query: 363 DIFHQI 368
+ H I
Sbjct: 665 SLLHFI 670
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 164 (62.8 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 74/302 (24%), Positives = 136/302 (45%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNP-----CRPEHLSDEVVDEMIGKLPKSLLD--VILPFQL 206
P T + S TG+ NP + + E I + P +LL+ + P+Q+
Sbjct: 1658 PPTTTTTTTTTTTSTATGQTNPTYVSKAHSYYSKAHSIQEDIIEQP-ALLEGGKLKPYQM 1716
Query: 207 EGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWA 259
+G+++ + L +ADEMGLGKT+Q IA+ + I G LVV P +W
Sbjct: 1717 QGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKKNNGPFLVVVPLSTLSNWG 1776
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRF-----P---RVVVISYTMLHRLRKSMIEQ 311
+E +W P + V + + P ++F P VV +Y + + + ++ +
Sbjct: 1777 QEFSKWAP-----KVKRVLYYGDKPARKSKFEEFIAPGQFNAVVTTYEYIIKDKNALSKI 1831
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W LIVDE H R TS+ R+ LL+GTP + +++ +N L
Sbjct: 1832 KWNYLIVDEGH--RMKNYTSKLS--IILGTSYSSRYRL-LLTGTPLQNSLPELWALLNFL 1886
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
P + + DF + + G + ++ ++ + + ++ L+ +L+ ++RRLK+ +
Sbjct: 1887 LPTIFDCVE-DFEQWFNAPFAQTGEKIEMNEE-EQLLIIQRLHKVLRP-FLLRRLKKEVE 1943
Query: 432 VQ 433
Q
Sbjct: 1944 AQ 1945
Score = 143 (55.4 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 49/221 (22%), Positives = 102/221 (46%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKXXXXXX 589
++++IF+ ++++ ++ F + K F+R+DG+T +R + F N E
Sbjct: 2043 HRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPNSEYFIFVLST 2102
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P + LQA+DRAHR GQ V + + +ES
Sbjct: 2103 RAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTAHSVEES--- 2159
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
+ + N K + ++I G + ++K++R L+ + + D+ E+ K
Sbjct: 2160 --------ILARANFKKELDKKIIQAG----QFNNKSNRSDRKKMLEDLMTQDETAEMEK 2207
Query: 710 --VPESSEASDFRAINTND-EITAKMNDKLLE--ESKTDHS 745
VP S+ ++ A + + E+ M+ + +E + K D +
Sbjct: 2208 QTVPTDSQINEMIARSPEEFELYENMDKERMEIDQKKWDEA 2248
Score = 59 (25.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 711 PESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVP 770
P+SS+ S+ R N + K+ DK D +++++NN + + + P
Sbjct: 2359 PKSSKESNNRKEKKNTK--EKLKDKDTNGLDDDDDDNNSNNNNNNDDYDNNNVSVVATTP 2416
Query: 771 GTDSRPRPLFESFRPEELDNTE 792
++ + L ++ EE D+ +
Sbjct: 2417 SRTNKRKELESNYSDEEDDDDD 2438
Score = 58 (25.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 697 QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDH-----SPTETD- 750
Q Q Q+ + P+ +A ++ N+ T + KLL SK +H SP +
Sbjct: 2731 QQQQQQQQQQQQQKPQQQQAIQSPNVDKNNSTTTTTSTKLLNNSKGNHNNNSLSPPASPC 2790
Query: 751 --DHHNNVSQYTGRIH 764
+NN+S I+
Sbjct: 2791 NLSQNNNISNNNNNIN 2806
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 11/74 (14%), Positives = 31/74 (41%)
Query: 684 DKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTD 743
++ E D+ S DQ + + S+ + N N+ +N+ + +
Sbjct: 2856 ERQKESKEGRERDRERSRDQKEHHSRESNRSDHHHHNSNNNNNNSNININNNNNNMNNNN 2915
Query: 744 HSPTETDDHHNNVS 757
++ ++++NN++
Sbjct: 2916 NNMINNNNNNNNMN 2929
Score = 39 (18.8 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 723 NTNDEITAKMNDKLLEESKTDHSPTETDD-HHNNVSQYTGRIH 764
N N+ + N+ + + +++ + ++ ++NN ++G+ H
Sbjct: 2950 NNNNNMNNNNNNNMNNNNNNNNNNSNNNNTNNNNQRDHSGKDH 2992
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 157 (60.3 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 165 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 224
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 225 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 282
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 283 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 336
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 337 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 379
Score = 125 (49.1 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 51/221 (23%), Positives = 100/221 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AVHSF 576
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F
Sbjct: 480 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF 539
Query: 577 QLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
N K ++ +SA V+ + +P + LQA DRAHR GQ V ++
Sbjct: 540 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 599
Query: 636 IFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMS 683
+T +E + LR + +N K + LQ I G +++ S
Sbjct: 600 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIR-HGATHVFAS 658
Query: 684 DKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFR 720
+++ ED+T L+ + +++ + L K+ ESS +FR
Sbjct: 659 KESELTDEDITTILERGEKKTAEMNERLQKMGESS-LRNFR 698
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 230 (86.0 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 115/567 (20%), Positives = 239/567 (42%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K L++ L +Q++G+ + L ++ADEMGLGKT+Q I + +
Sbjct: 710 VIERVDKQSTFLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLM 769
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W EL++W P + R + V R + V++
Sbjct: 770 ELKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQLRSGKFNVLI 829
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 830 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 884
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 885 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 942
Query: 416 LLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXSEIVSAKAAVG---VIND-SEKDATND 471
+L+ ++RRLK+ + Q + V + G ++ D SEKD
Sbjct: 943 VLRP-FLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGK 1001
Query: 472 KTPKD--SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI-D-VN 527
K + C + E A+ GF + P + + G ++ D +
Sbjct: 1002 GGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKFELLDRIL 1061
Query: 528 PR----SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEV 582
P+ ++++++F ++ ++++ + ++R+DG T DR + F + ++
Sbjct: 1062 PKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQY 1121
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
L+ +A VV + +P LQA+DRAHR GQ + V + C ++
Sbjct: 1122 FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS 1181
Query: 643 TDE----SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTL 695
+E + LN + + + + + E ++ + + E + + D +D TL
Sbjct: 1182 VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVPDDETL 1241
Query: 696 DQVAS--SDQFQELMKVPESSEASDFR 720
+Q+ + D+F+ M++ D R
Sbjct: 1242 NQMIARNEDEFELFMRMDLDRRREDAR 1268
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 147 (56.8 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIG---FVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
+K++IFA KVLD +++++ E + R+DG+T + R + F + + K
Sbjct: 628 HKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLS 687
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ +A V+ ++ +P + LQA DR HR GQ + V I+ F KD+ +E
Sbjct: 688 STRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEE 745
Score = 140 (54.3 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 61/261 (23%), Positives = 119/261 (45%)
Query: 192 KLPKSLLDVILP-FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAG--- 244
K PK + L +Q++G+ + + + G ++ADEMGLGKTLQ I+ + I G
Sbjct: 165 KQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGING 224
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPRVVVISYTML 301
LVV P +W E+ ++ P + ++ N + L + +++ SY +
Sbjct: 225 PFLVVVPVSTLSNWYNEIRKFAPK-IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRP 361
R +++ +W LIVDE H ++ S+ R+ LL+GTP +
Sbjct: 284 IRDFNKLVKINWKYLIVDEGHRLKNSQCL-----LIKILKKLNVSNRL-LLTGTPLQNNL 337
Query: 362 YDIFHQINMLWPGL-----LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+++ +N + P + L + ++F + ++G + ++ ++L L
Sbjct: 338 NELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETL 397
Query: 417 LKQ--TV----MIRRLKQHLL 431
+K T+ M+RRLK+ ++
Sbjct: 398 IKNLHTILKPFMLRRLKRDVI 418
Score = 40 (19.1 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQ 670
+D+ + L++S+ C +S + K+D ++
Sbjct: 827 SDQEIDELLDRSVECYNSIDDSKFDKVK 854
Score = 40 (19.1 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA-GIEVEGIPW-VTLNVVEKLSHSIDTG 171
+GG+ Y++ ++T +N GI + + TL + LSH I+ G
Sbjct: 171 TGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENG 221
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 147 (56.8 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIG---FVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
+K++IFA KVLD +++++ E + R+DG+T + R + F + + K
Sbjct: 628 HKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLS 687
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ +A V+ ++ +P + LQA DR HR GQ + V I+ F KD+ +E
Sbjct: 688 STRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEE 745
Score = 140 (54.3 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 61/261 (23%), Positives = 119/261 (45%)
Query: 192 KLPKSLLDVILP-FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAG--- 244
K PK + L +Q++G+ + + + G ++ADEMGLGKTLQ I+ + I G
Sbjct: 165 KQPKLITGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGING 224
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPRVVVISYTML 301
LVV P +W E+ ++ P + ++ N + L + +++ SY +
Sbjct: 225 PFLVVVPVSTLSNWYNEIRKFAPK-IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRP 361
R +++ +W LIVDE H ++ S+ R+ LL+GTP +
Sbjct: 284 IRDFNKLVKINWKYLIVDEGHRLKNSQCL-----LIKILKKLNVSNRL-LLTGTPLQNNL 337
Query: 362 YDIFHQINMLWPGL-----LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+++ +N + P + L + ++F + ++G + ++ ++L L
Sbjct: 338 NELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETL 397
Query: 417 LKQ--TV----MIRRLKQHLL 431
+K T+ M+RRLK+ ++
Sbjct: 398 IKNLHTILKPFMLRRLKRDVI 418
Score = 40 (19.1 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQ 670
+D+ + L++S+ C +S + K+D ++
Sbjct: 827 SDQEIDELLDRSVECYNSIDDSKFDKVK 854
Score = 40 (19.1 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA-GIEVEGIPW-VTLNVVEKLSHSIDTG 171
+GG+ Y++ ++T +N GI + + TL + LSH I+ G
Sbjct: 171 TGGQLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENG 221
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 169 (64.5 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 65/263 (24%), Positives = 119/263 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + +++S K F R+DG+ R+ A+ F +E
Sbjct: 811 RGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLL 870
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 871 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDI 930
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQF--Q 705
+ K + + +Q + G + L+ S + S +++++ +F +
Sbjct: 931 IERAKKKMVL-------DHLVIQRMDTTGRTVLDNSS-ANSNSNPFNKEELSAILKFGAE 982
Query: 706 ELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY-TGRIH 764
+L K E E S+ + ++ DEI +L E ++D + TD+ +SQ+
Sbjct: 983 DLFKEAEGEE-SEPQEMDI-DEIL-----RLAETRESDQGSSATDEL---LSQFKVANFT 1032
Query: 765 LYSCVPGTDSRPRPLFESFRPEE 787
+ P D +P ++ PEE
Sbjct: 1033 MDESTPDLDEKPGRDWDEIIPEE 1055
Score = 118 (46.6 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 40/139 (28%), Positives = 66/139 (47%)
Query: 204 FQLEGVRFGLRRGGRC---LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+GV + RC ++ADEMGLGKT+Q I+ + G +VV P
Sbjct: 492 YQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPLSTLT 551
Query: 257 SWAEELERWLPFCLPADIHL--VFGHRN-------NP-VHLTRFPRVVVISYTMLHRLRK 306
SW E + W P + ++L V + NP +F ++ +Y +L + +
Sbjct: 552 SWQREFDTWAPD-MNVVVYLGDVTSRKTIRDYEWINPQTKRIKF-NALLTTYEILLKDKG 609
Query: 307 SMIEQDWALLIVDESHHVR 325
+ +WA L VDE+H ++
Sbjct: 610 VLGNINWAFLGVDEAHRLK 628
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 157 (60.3 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 186 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 245
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 246 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 303
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 304 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 357
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 358 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 400
Score = 125 (49.1 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 51/221 (23%), Positives = 100/221 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AVHSF 576
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F
Sbjct: 501 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF 560
Query: 577 QLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
N K ++ +SA V+ + +P + LQA DRAHR GQ V ++
Sbjct: 561 NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 620
Query: 636 IFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMS 683
+T +E + LR + +N K + LQ I G +++ S
Sbjct: 621 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIR-HGATHVFAS 679
Query: 684 DKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFR 720
+++ ED+T L+ + +++ + L K+ ESS +FR
Sbjct: 680 KESELTDEDITTILERGEKKTAEMNERLQKMGESS-LRNFR 719
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 157 (60.3 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 403
Score = 125 (49.1 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 53/242 (21%), Positives = 110/242 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AVHSF 576
+ ++++IF+ ++LD ++++ +G + R+DG T +R++ A+ +F
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAF 563
Query: 577 QLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+ N + ++ +SA V+ + +P + LQA DRAHR GQ V ++
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 636 IFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMS 683
+T +E + LR + +N K + LQ I G +++ S
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGATHVFAS 682
Query: 684 DKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEE 739
+++ ED+T L+ + +++ + L K+ ESS +FR ++T + + E+
Sbjct: 683 KESELTDEDITTLLERGERKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREK 740
Query: 740 SK 741
K
Sbjct: 741 QK 742
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 159 (61.0 bits), Expect = 8.3e-15, Sum P(3) = 8.3e-15
Identities = 71/252 (28%), Positives = 111/252 (44%)
Query: 192 KLPKSLLDVILPFQLEGVRF--GLRRGGRC--LIADEMGLGKTLQAIAIAACFISA---G 244
KL K L D + Q EGV F L R GR ++AD+MGLGKT+Q I+ + A
Sbjct: 96 KLYKGLYDKLYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLSGMYDAELAN 155
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRN-NPVHLTRFPRVVVISYTMLH 302
L+V P L +W E +W P + H RN N + R V++ +Y ML
Sbjct: 156 HTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLI 215
Query: 303 RLRKSM-----IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPS 357
+ + E W +I+DE+H ++ S + R VLL+GTP
Sbjct: 216 NNYEQLGSNGHREFKWDYVILDEAHKIKTSST-----KTAKSAHAIPAKNR-VLLTGTPV 269
Query: 358 LSRPYDIFHQINMLWPG-LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE-LNV 415
+ +++ + G LLG +K F Y + T + + + G+R+ + L
Sbjct: 270 QNNLREMWALFDFACQGSLLGTSK-TFKTEYENPITRAREKDATPGEKALGLRISQNLTD 328
Query: 416 LLKQTVMIRRLK 427
++K +RR K
Sbjct: 329 IIKP-YFLRRTK 339
Score = 113 (44.8 bits), Expect = 8.3e-15, Sum P(3) = 8.3e-15
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN-TLPRDRQSAVHSFQLSNEVKXXXXXX 589
++ +IF+ K+LD ++ + + +R+DG T +R+ + FQ
Sbjct: 492 HRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTT 551
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A VV + +P+ QA DRA+R GQT V IY T +E
Sbjct: 552 QVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEE 607
Score = 74 (31.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 33/143 (23%), Positives = 59/143 (41%)
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIA 673
SL+ D +T + CA + +E + + S +S NG E+
Sbjct: 1181 SLLENESDEESNEDKTKSSGASETCADELVEEVQTSSGDNSKSYETSEANGTL--ADELV 1238
Query: 674 VEGVSYLEMSDKTDRGSE--DLTLDQVASSDQFQ-ELMKVPESSEASDFRAINTNDEITA 730
E Y E + +D+ SE + ++ A ++ + + E SEAS+ N+ +EI
Sbjct: 1239 EEEGEYREGKNTSDKVSESNETHSEEFAEEEKPSGDKSESYEISEASETHTDNSEEEIIG 1298
Query: 731 KMND--KLLEESKTDHSPTETDD 751
K+ E S+ D S E ++
Sbjct: 1299 DHTGSYKISESSEADESVVEEEE 1321
Score = 62 (26.9 bits), Expect = 8.3e-15, Sum P(3) = 8.3e-15
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 677 VSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKL 736
VS LE ++ + +ED T AS EL++ ++S + ++ T+ E + D+L
Sbjct: 1180 VSLLE-NESDEESNEDKTKSSGASETCADELVEEVQTSSGDNSKSYETS-EANGTLADEL 1237
Query: 737 LEESKTDHSPTETDD 751
+EE T D
Sbjct: 1238 VEEEGEYREGKNTSD 1252
Score = 53 (23.7 bits), Expect = 6.9e-14, Sum P(3) = 6.9e-14
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 675 EGVSYLEMSDK-TDRGSEDLTLDQVAS---SDQFQELMKVPESSEASDFRAINTNDEITA 730
E E S+ TD E++ D S S+ + V E E S +NT + +
Sbjct: 1277 ESYEISEASETHTDNSEEEIIGDHTGSYKISESSEADESVVEEEEPSG-ETLNTEE---S 1332
Query: 731 KMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYS 767
+M ++ EES + E ++ H+ V + TG + L S
Sbjct: 1333 EMGEE--EESAELIAGQEQEEWHSAVLESTGDVELDS 1367
Score = 47 (21.6 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 15/75 (20%), Positives = 37/75 (49%)
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAK---MNDKLLEE 739
+++++ G E+ + + +A +Q + V ES+ + + T D+ K + +L
Sbjct: 1329 TEESEMGEEEESAELIAGQEQEEWHSAVLESTGDVELDSNETMDQCAPKTVPVETHVLPV 1388
Query: 740 SKTDHSPTETDDHHN 754
S T+ + +D+ +N
Sbjct: 1389 SSTNTAAEASDNKYN 1403
Score = 39 (18.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 861 RTTPSLEISHPLPSGAEWKKVRICSGSRKKEKE 893
R+TP+ + KK ++ S + ++E+E
Sbjct: 1096 RSTPNESVDDSFVHSVRTKKRQVISDTEEEEEE 1128
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 164 (62.8 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1126 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLS 1185
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1186 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1245
Query: 649 QNLN-KS--LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705
Q KS R V S N K D L+ V VS L ++ ++ L L Q Q +
Sbjct: 1246 QRAKEKSEIQRMVISGGNFKPDTLKPKEV--VSLLLDDEELEK---KLRLRQEEKRQQ-E 1299
Query: 706 ELMKVPE 712
E +V E
Sbjct: 1300 ETNRVKE 1306
Score = 121 (47.7 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 530 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 589
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 590 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 649
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 650 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 703
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 704 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 756
Query: 427 KQ 428
K+
Sbjct: 757 KK 758
Score = 47 (21.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 36/132 (27%), Positives = 53/132 (40%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVYP-GEEECLRRL-GQWL----SDVMPSHYTQN- 121
PE F R E SP S+ P I F+Y G+ +WL S P + Q+
Sbjct: 828 PELFE-RQETWSPFHISLKPYQISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSL 886
Query: 122 --NSG--GKACVYKLR--DYNPVLTCLKNSAGIEVEGI--PWVTLNVVEKLSHSIDTGR- 172
G ++C LR D +P A + ++G+ W+ L + K S+ + R
Sbjct: 887 FHRKGVNEESCFSFLRFIDVSPA-----EMANLMLQGLLARWLALFLSLKASYRLHQLRS 941
Query: 173 WNPCRPEHLSDE 184
W PE S E
Sbjct: 942 WG--EPEGESQE 951
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 144 (55.7 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 30/121 (24%), Positives = 60/121 (49%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ R +K+++F+ +LD + ++ + F R+DG+ +R+ ++SF +V
Sbjct: 593 ELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFL 652
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ ++A V+ + +P LQA+DR HR GQT V +Y +T D
Sbjct: 653 FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 712
Query: 645 E 645
+
Sbjct: 713 Q 713
Score = 135 (52.6 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 67/246 (27%), Positives = 113/246 (45%)
Query: 204 FQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRL- 256
+Q+EG+ + LR G ++ADEMGLGKT+Q IA A I G +VC + L
Sbjct: 209 YQVEGMEW-LRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 267
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV---H-----LTRFPRVVVISYTMLHRLRKSM 308
+W E +R+ P H R V H L P VVV S+ + R + ++
Sbjct: 268 NWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHP-VVVTSFEIAMRDQNAL 326
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQI 368
W LIVDE H ++ K E +LL+GTP + +++ +
Sbjct: 327 QHCYWKYLIVDEGHRIKNMKCRLIRE------LKRFNADNKLLLTGTPLQNNLSELWSLL 380
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N L P + K F +++ D+ ++ + + + ++ + V L L+ +L ++RRLK
Sbjct: 381 NFLLPDVFDDLK-SF-ESWFDITSLSETAEDIIAKEREQNV-LHMLHQILTP-FLLRRLK 436
Query: 428 QHLLVQ 433
+ ++
Sbjct: 437 SDVALE 442
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 161 (61.7 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 51/187 (27%), Positives = 92/187 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ ++
Sbjct: 1147 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQSRTDIFVFLLS 1206
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1207 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1266
Query: 649 QNLN-KS--LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705
Q KS R V S N K D L+ V VS L ++ ++ L L Q Q +
Sbjct: 1267 QRAKEKSEIQRMVISGGNFKPDTLKPKEV--VSLLLDDEELEK---KLRLRQ-EEKRQLE 1320
Query: 706 ELMKVPE 712
E KV E
Sbjct: 1321 ESSKVKE 1327
Score = 124 (48.7 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 59/243 (24%), Positives = 119/243 (48%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 522 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 581
Query: 257 SWAEELERWLP-FCL------PADIHLV--FGHRNNPVHLTRFP-RVVVISYTMLHRLRK 306
+W +E R++P F + P D ++ F + ++ P VV+ SY ++ + K
Sbjct: 582 NWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKT-LYTQNAPFHVVITSYQLVVQDVK 640
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFH 366
W +++DE+ ++ S TS + +LL+GTP + +++
Sbjct: 641 YFQRVKWQYMVLDEAQALKSS--TSVRWKILLQFQCRNR----LLLTGTPIQNTMAELWA 694
Query: 367 QINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR
Sbjct: 695 LLHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRR 747
Query: 426 LKQ 428
+K+
Sbjct: 748 IKK 750
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 157 (60.3 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 403
Score = 124 (48.7 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 53/242 (21%), Positives = 109/242 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AVHSF 576
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF 563
Query: 577 QLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+ N + ++ +SA V+ + +P + LQA DRAHR GQ V ++
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 636 IFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMS 683
+T +E + LR + +N K + LQ I G +++ S
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGATHVFAS 682
Query: 684 DKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEE 739
+++ ED+T L+ + +++ + L K+ ESS +FR ++T + + E+
Sbjct: 683 KESELTDEDITTLLERGERKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREK 740
Query: 740 SK 741
K
Sbjct: 741 QK 742
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 157 (60.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 403
Score = 124 (48.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 53/242 (21%), Positives = 109/242 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AVHSF 576
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ A+ +F
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF 563
Query: 577 QLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+ N + ++ +SA V+ + +P + LQA DRAHR GQ V ++
Sbjct: 564 NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVF 623
Query: 636 IFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVSYLEMS 683
+T +E + LR + +N K + LQ I G +++ S
Sbjct: 624 RLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGATHVFAS 682
Query: 684 DKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEE 739
+++ ED+T L+ + +++ + L K+ ESS +FR ++T + + E+
Sbjct: 683 KESELTDEDITTLLERGERKTAEMNERLQKMGESS-LRNFR-MDTEQSLYKFEGEDYREK 740
Query: 740 SK 741
K
Sbjct: 741 QK 742
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 160 (61.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 35/134 (26%), Positives = 68/134 (50%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF ++LD +++F++ G ++R+DG+T RQ+ + F +
Sbjct: 2071 HRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTR 2130
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A VVF + +P++ QA+DR HR GQT V+IY ++ T +E+ +
Sbjct: 2131 SGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKK 2190
Query: 651 LNKSLRCVSSATNG 664
N+ A G
Sbjct: 2191 ANQKRMLGDMAIEG 2204
Score = 140 (54.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 52/215 (24%), Positives = 107/215 (49%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A G L++ P + L+W EL+RW P +
Sbjct: 648 ILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYY 707
Query: 276 LVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
R P V + SY ++ + ++ ++W LI+DE+ +++ K S+
Sbjct: 708 GAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFK--SQ 765
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ R +LL+GTP + +++ ++ L P + ++ +F + + + T
Sbjct: 766 RWQSLLNFNSQ----RRLLLTGTPLQNSLMELWSLMHFLMPHVF-QSHREFKEWFSNPLT 820
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+G Q++++G+ ++ L+ +L+ ++RR+K
Sbjct: 821 GM-IEGS--QEYNEGL-VKRLHKVLRP-FLLRRVK 850
Score = 44 (20.5 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 728 ITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRP 778
++ ++ E +H+P T HH + R C P + PRP
Sbjct: 2406 VSERLRGARAETQGANHTPV-TSTHHTRSTSTPPR-----CSPARERVPRP 2450
Score = 41 (19.5 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 51 PTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYP 97
P P SALA+P T P + L +P + ++ V P
Sbjct: 1555 PVLVPASALANPFPATPNPAPAQASLLAPAPTASQALATSLAPMVAP 1601
Score = 40 (19.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 202 LPFQLEGV-RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P + E V R L + RCL D M T + +A F+S +IL+
Sbjct: 857 MPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGH-FMSVINILM 903
Score = 38 (18.4 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 715 EASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
E +F + ++ D LEE P+ DD V+
Sbjct: 2203 EGGNFTTAYFKQQTIRELFDMPLEEPSGSSVPSAPDDEEETVA 2245
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 463 DSEKDATNDKTPKDSDEHDDSG 484
+SE+ + + ++ +E DD G
Sbjct: 536 ESEESQSQSQADEEEEEDDDFG 557
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 115 (45.5 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAG--------SILVVCPAILRLSWAEELERWL 266
C++ADEMGLGKTLQ IA+ + G ++VCP+ L +WA EL +WL
Sbjct: 331 CIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL 386
Score = 106 (42.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 47/230 (20%), Positives = 94/230 (40%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXXX 589
+K+++ +++ + LD +++ K VR+DG RQ V F +
Sbjct: 673 DKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSS 732
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ A ++ ++ +P+ QA R R GQ IY F + T +E +Q
Sbjct: 733 KAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQ 792
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
+ + S + K D + + + + L ++ T + Q ++L +
Sbjct: 793 RQSMKMSLSSCVVDAKEDVERLFSSDNLRQLFQKNENTICETHETYHCKRCNAQGKQLKR 852
Query: 710 VPES--SEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
P +A+ + +N +D + K ND LL K +H H+N++S
Sbjct: 853 APAMLYGDATTWNHLN-HDALE-KTNDHLL---KNEH-------HYNDIS 890
Score = 104 (41.7 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 51/197 (25%), Positives = 88/197 (44%)
Query: 247 LVVCPAILRLSWAEELERWL-PFCL-PADIH---LVFGHRNNPV----HLTRFPR----- 292
++VCP+ L +WA EL +WL P L P + G N V H +
Sbjct: 367 IIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIV 426
Query: 293 --VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIV 350
V++ISY L R + + L++ DE H R + R V
Sbjct: 427 KPVLIISYETLRRNVDQLKNCNVGLMLADEGH------RLKNGDSLTFTALDSISCPRRV 480
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-QDFSKG-V 408
+LSGTP + + F ++ PGLLG ++ +F K + + ++G ++ +KG
Sbjct: 481 ILSGTPIQNDLSEYFALLSFSNPGLLG-SRAEFRKNF-ENPILRGRDADATDKEITKGEA 538
Query: 409 RLEELNVLLKQTVMIRR 425
+L++L+ ++ + + IRR
Sbjct: 539 QLQKLSTIVSKFI-IRR 554
Score = 46 (21.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 194 PKSLLDVILPFQLEGVRF 211
PK L ++ P Q+EGVRF
Sbjct: 265 PK-LAKILRPHQVEGVRF 281
Score = 41 (19.5 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 702 DQF--QELMKVPESSEASDFRAINTNDEITAKMN--DKLLEESKTDHSPTETDDHHNNVS 757
D+F ++ +++P+ +A + + +AK + ++ L + KT E+DD +S
Sbjct: 625 DEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFSILERFLHKIKT-----ESDDKIVLIS 679
Query: 758 QYTGRIHL 765
YT + L
Sbjct: 680 NYTQTLDL 687
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 163 (62.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 40/145 (27%), Positives = 76/145 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1119 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLS 1178
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1179 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1238
Query: 649 QNLN-KS--LRCVSSATNGKYDALQ 670
Q KS R V S N K D L+
Sbjct: 1239 QRAKEKSEIQRMVISGGNFKPDTLK 1263
Score = 121 (47.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 523 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 582
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 583 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 642
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 643 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 696
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 697 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 749
Query: 427 KQ 428
K+
Sbjct: 750 KK 751
Score = 45 (20.9 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVY 96
PE F R E SP S+ P I F+Y
Sbjct: 821 PELFE-RQETWSPFHISLKPYEISKFIY 847
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 140 (54.3 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 48/201 (23%), Positives = 85/201 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1051 HRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLST 1110
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A VV + +P +QA RAHR GQ V IY F K + +E Q
Sbjct: 1111 RAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQ 1170
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQ-VASSDQFQELM 708
K + + +S E+ D G+E+L D+ + + QE
Sbjct: 1171 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEGEGENKEGQEDS 1226
Query: 709 KVPESSEASDFRAINTNDEIT 729
V + + R ++ N + T
Sbjct: 1227 SVIHYDDKAIDRLLDRNQDAT 1247
Score = 120 (47.3 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+QLEG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 712 PYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 771
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 772 INWEREFEMWAP 783
Score = 77 (32.2 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 24/98 (24%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA L+VDE+H R + +LL
Sbjct: 831 VLLTSYELITIDTAVLGSIDWACLVVDEAH------RLKNNQSKFFRILNNYPLQHKLLL 884
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 885 TGTPLQNNLEELFHLLNFLTPERFSNLE-GFLEEFADI 921
Score = 42 (19.8 bits), Expect = 0.00037, Sum P(4) = 0.00037
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 705 QELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDD 751
+E K PESS ++ + K +K E +K+ S +TDD
Sbjct: 1598 EEKEKTPESSSEAE--------KADGKQEEKEEENAKSGDSEEKTDD 1636
Score = 39 (18.8 bits), Expect = 0.00037, Sum P(4) = 0.00037
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 640 KDTTDESHWQNLNK---SLRCVSSATNGKYDALQEIAVEGVSYLEMSD 684
+D TD++ Q++N+ S + + +A +E+ E + E D
Sbjct: 1244 QDATDDTELQSMNEYLSSFKVAQYVVKDEEEAEEEVQREIIKQEESVD 1291
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 144 (55.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 61/218 (27%), Positives = 100/218 (45%)
Query: 179 EHLSDEVVDEMIG-KLPKSLLDVILPFQLEGVRFGLRRG-----GRCLIADEMGLGKTLQ 232
E L +E E+ + PK L+ +LPFQ EGV + L+R G ++ADEMG+GKT+Q
Sbjct: 232 EKLEEEAPREVKQIEQPKELVLNLLPFQREGV-YWLKRQEDSSFGGGILADEMGMGKTIQ 290
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN--PVHLTRF 290
IA+ LVV P + + W EE++ L +L +G + L+ +
Sbjct: 291 TIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKALST--YLYYGQARDISGEELSSY 348
Query: 291 PRVVVISYTMLHRL----------------RKSMIEQ-DWALLIVDESHHVRCSKRTSEP 333
VV+ SY ++ + KS++ Q ++ +I+DE+H ++ RT
Sbjct: 349 D-VVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIK--SRTCN- 404
Query: 334 EEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
R + LSGTP +R ++F + L
Sbjct: 405 ---TARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFL 439
Score = 134 (52.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 31/152 (20%), Positives = 68/152 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
R+ K I+F+ +LD + + + G V++DG P+ R + + +F +
Sbjct: 707 RTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVS 766
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
L+ + A V ++ + ++ QA DR HR GQ + + C +++ +
Sbjct: 767 LKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKII 826
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
+ K + + + + AL +++VE + +L
Sbjct: 827 ELQEKKAQMIHATIDQDEKALNQLSVEDMQFL 858
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/110 (23%), Positives = 46/110 (41%)
Query: 722 INTNDEITAKMNDKLLE---ESKTDHSPTETD-DHHNNVSQYTGRIHLYSC-VPGTDSRP 776
I + I K+ D++ + ES+ H+ + N + ++ SC +P +
Sbjct: 601 IENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLS 660
Query: 777 RPLFESFRPEELDNTEHISGCLKENPGYRHA--IQAFINEWNALRPIERT 824
P E F E+ N I + N +R + I+A + E LR +RT
Sbjct: 661 APALEDFSEEKFKNAS-ILNRIDMN-SWRSSTKIEALVEELYLLRKKDRT 708
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 162 (62.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1116 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLS 1175
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1176 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1235
Query: 649 QNLN-KS--LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705
Q KS R V S N K D L+ V VS L ++ ++ L L Q Q +
Sbjct: 1236 QRAKEKSEIQRMVISGGNFKPDTLKPKEV--VSLLLDDEELEK---KLRLRQEEKRQQ-E 1289
Query: 706 ELMKVPE 712
E +V E
Sbjct: 1290 ETNRVKE 1296
Score = 121 (47.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 521 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 580
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 581 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 640
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 641 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 694
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 695 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 747
Query: 427 KQ 428
K+
Sbjct: 748 KK 749
Score = 44 (20.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVY 96
PE F R E SP S+ P I F+Y
Sbjct: 819 PELFE-RQETWSPFHISLKPYHISKFIY 845
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 162 (62.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1120 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLS 1179
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1180 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1239
Query: 649 QNLN-KS--LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705
Q KS R V S N K D L+ V VS L ++ ++ L L Q Q +
Sbjct: 1240 QRAKEKSEIQRMVISGGNFKPDTLKPKEV--VSLLLDDEELEK---KLRLRQEEKRQQ-E 1293
Query: 706 ELMKVPE 712
E +V E
Sbjct: 1294 ETNRVKE 1300
Score = 121 (47.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 524 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 583
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 584 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 643
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 644 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 697
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 698 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 750
Query: 427 KQ 428
K+
Sbjct: 751 KK 752
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVY 96
PE F R E SP S+ P I F+Y
Sbjct: 822 PELFE-RQETWSPFHISLKPYQISKFIY 848
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 162 (62.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 51/187 (27%), Positives = 93/187 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1126 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLS 1185
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1186 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1245
Query: 649 QNLN-KS--LRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705
Q KS R V S N K D L+ V VS L ++ ++ L L Q Q +
Sbjct: 1246 QRAKEKSEIQRMVISGGNFKPDTLKPKEV--VSLLLDDEELEK---KLRLRQEEKRQQ-E 1299
Query: 706 ELMKVPE 712
E +V E
Sbjct: 1300 ETNRVKE 1306
Score = 121 (47.7 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 530 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 589
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 590 NWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 649
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 650 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 703
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 704 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 756
Query: 427 KQ 428
K+
Sbjct: 757 KK 758
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVY 96
PE F R E SP S+ P I F+Y
Sbjct: 828 PELFE-RQETWSPFHISLKPYQISKFIY 854
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 141 (54.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 64/265 (24%), Positives = 116/265 (43%)
Query: 194 PKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACFIS----AGSI 246
P + + +Q+ G+ + L G ++ADEMGLGKTLQ I+ G
Sbjct: 179 PAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMGITGPH 238
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV-------VISYT 299
LV+ P +W E +W P ++ ++ G + L R+V + SY
Sbjct: 239 LVIVPKSTLDNWKREFGKWTP---EVNVLVLQGAKEERAALIA-ERLVDESFDVCITSYE 294
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
M+ R + + + W +I+DE+H ++ +E R+ L++GTP +
Sbjct: 295 MILREKSHLKKFAWEYIIIDEAHRIK-----NEESSLAQVIRLFNSRNRL-LITGTPLQN 348
Query: 360 RPYDIFHQINMLWPGLLGKAK-YD--FAKTYCDVKTVQGYQGQLFQDFS-KGVRLE---- 411
++++ +N L P + G ++ +D F+ D TV ++ + F + V+ +
Sbjct: 349 NIHELWALLNFLLPDVFGDSEAFDQWFSGEGQDSDTVVQQLHRVLRPFLLRRVKADVEKS 408
Query: 412 -----ELNVLLKQTVMIRRLKQHLL 431
E+N+ LK T M R Q +L
Sbjct: 409 LLPKKEVNLYLKMTEMQRTWYQKIL 433
Score = 139 (54.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 33/118 (27%), Positives = 59/118 (50%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++IF+ +VLD ++++ + + RIDG T DR +A+ + K
Sbjct: 505 QGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVFLL 564
Query: 589 XXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ ++A V+ + +P LQA DRAHR GQT V +Y F +T +E
Sbjct: 565 TTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEE 622
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 154 (59.3 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 40/143 (27%), Positives = 73/143 (51%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++I++ K++D ++E++ + ++R+DG++ R+ V FQ ++
Sbjct: 1173 HRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTR 1232
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E Q
Sbjct: 1233 AGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQR 1292
Query: 651 LN-KS--LRCVSSATNGKYDALQ 670
KS R V S N K D L+
Sbjct: 1293 AREKSEIQRMVISGGNFKPDTLK 1315
Score = 129 (50.5 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 63/253 (24%), Positives = 118/253 (46%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA-----GS 245
PK + +Q++G+ + +G ++ADEMGLGKT+Q+IA C I+ G
Sbjct: 528 PKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFL-CHIAEHYGVWGP 586
Query: 246 ILVVCPAILRLSWAEELERWLP-FCL------PADIHLVFGHRNNPVHL-TRFP--RVVV 295
LV+ PA +W +E+ R++P F + PA+ ++ + HL TR VV+
Sbjct: 587 FLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQK-HLHTRDASFHVVI 645
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
SY ++ K W +++DE+ ++ S + R+ LLSGT
Sbjct: 646 TSYQLVVSDYKYFNRIKWQYMVLDEAQAIK-----SAASQRWKLLLGFSCRNRL-LLSGT 699
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + +++ ++ + P L +F + + K ++ + K ++ L++
Sbjct: 700 PIQNSMAELWALLHFIMPTLFDSHD-EFNEWFS--KDIESHAENKTGIDEK--QISRLHM 754
Query: 416 LLKQTVMIRRLKQ 428
+LK M+RR+K+
Sbjct: 755 ILKP-FMLRRIKK 766
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 167 (63.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 61/202 (30%), Positives = 90/202 (44%)
Query: 203 PFQLEGVRF------GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAG---------S 245
P Q EG+ F G+R GRC ++ADEMGLGKTLQ I++ G
Sbjct: 298 PHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKK 357
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+V P L +W +E ++WL + H+ + F V++ISY ML R
Sbjct: 358 TLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSL 417
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIF 365
+ + LLI DE H ++ S + RI+L +GTP + + F
Sbjct: 418 DQIKNIKFDLLICDEGHRLKNSAI-----KTTTALISLSCEKRIIL-TGTPIQNDLQEFF 471
Query: 366 HQINMLWPGLLGKAKYDFAKTY 387
I+ + PG+LG + K Y
Sbjct: 472 ALIDFVNPGILGSLS-SYRKIY 492
Score = 112 (44.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 39/175 (22%), Positives = 76/175 (43%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VK 583
++ P + K+++ +++ + L+ +QE G + R+DG T RQ V F +
Sbjct: 656 ELRP-TEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFF 714
Query: 584 XXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
L+ +++ ++ +P+ +QA R R GQ V+IY T
Sbjct: 715 IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTI 774
Query: 644 DESHWQN-LNKSLRCVSSATNGKYDALQEIAVEGVSYL-EMSDKTDRGSEDLTLD 696
+E +Q ++K C + K + +VE + L + + +D + DL LD
Sbjct: 775 EEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTLHESSDCVTHDL-LD 828
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 957 VCTNCQLDCHKLVKH-IKPLSLEQRRKY 983
V +CQL H + +KPLS+ Q +++
Sbjct: 847 VSRDCQLGPHHQKSNSLKPLSMSQLKQW 874
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 157 (60.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 74/333 (22%), Positives = 140/333 (42%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 794 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 853
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 854 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 913
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + T S +++++
Sbjct: 914 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSTPSSSTPFNKEELSAIL 965
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I N+ + D+LL + K + +
Sbjct: 966 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1025
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + R + +P +S+ R + E R +EL+ + C K+ +
Sbjct: 1026 DDIELEPERNSR-NWEEIIP--ESQRRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1082
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1083 GRRSRSRRYSGSDSDSITERKRPKKRGRPRTIP 1115
Score = 126 (49.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 47/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 480 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 539
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W P + A ++L N + H P+ +++ +Y +L + +
Sbjct: 540 SWQREIQTWAPQ-MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF 598
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 599 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 652
Query: 365 FHQI 368
H I
Sbjct: 653 LHFI 656
Score = 39 (18.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 452 VSAKAAV-GVINDSEKDATNDKTPKDSDEHD 481
+S +V G +DSE + DK+ + E D
Sbjct: 148 MSGSGSVSGTGSDSESEEDGDKSSCEESESD 178
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 161 (61.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 40/145 (27%), Positives = 76/145 (52%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++I++ +++D ++E++ + ++R+DG++ +R+ V FQ N++
Sbjct: 1124 QGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLS 1183
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ ++A V+F + +P++ QA DRAHR GQT V +Y K T +E
Sbjct: 1184 TRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIL 1243
Query: 649 QNLN-KS--LRCVSSATNGKYDALQ 670
Q KS R V S N K D L+
Sbjct: 1244 QRAKEKSEIQRMVISGGNFKPDTLK 1268
Score = 121 (47.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 58/242 (23%), Positives = 116/242 (47%)
Query: 204 FQLEGVRF--GL-RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L +G ++ADEMGLGKT+Q+IA+ A G L++ PA
Sbjct: 526 YQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLN 585
Query: 257 SWAEELERWLP-FCL------PADIHLVFGHRNNPVHLTR-FP-RVVVISYTMLHRLRKS 307
+W +E R++P F + P D ++ + T+ P VV+ SY ++ + K
Sbjct: 586 NWHQEFARFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 645
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQ 367
W +++DE+ ++ S R+ LL+GTP + +++
Sbjct: 646 FQRVKWQYMVLDEAQALKSSSSVR-----WKILLQFQCRNRL-LLTGTPIQNTMAELWAL 699
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++ + P L + +F + + D+++ + + ++ +L L+++LK M+RR+
Sbjct: 700 LHFIMPTLFDSHE-EFNEWFSKDIESHAENKSAIDEN-----QLSRLHMILKP-FMLRRI 752
Query: 427 KQ 428
K+
Sbjct: 753 KK 754
Score = 51 (23.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 42/150 (28%), Positives = 57/150 (38%)
Query: 69 PENFRVRLEICSPDSFSVTPLAIEGFVYP-GEEECLRRL-GQWL----SDVMPSHYTQN- 121
PE F R E SP S+ P I F+Y G+ +WL S P H Q+
Sbjct: 824 PELFE-RQETWSPFHISLKPYPISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDHIQQSL 882
Query: 122 --NSG--GKACVYKLR--DYNPV-LTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGR-W 173
G ++C LR D +P + L N + W+ L + K S+ + R W
Sbjct: 883 FHRKGINEESCFSFLRFIDVSPAEMANLMNQGHLA----RWLALFLSLKASYRLHHLRSW 938
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILP 203
PE + D K LLDV P
Sbjct: 939 --MEPEREKQQ--DSHCLKNKDFLLDVNFP 964
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 159 (61.0 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 63/236 (26%), Positives = 111/236 (47%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ +I +V+ P
Sbjct: 189 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 248
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + V V SY M+ + KS+ ++
Sbjct: 249 NWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 306
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 307 HWRYLVIDEAHRIK-----NEKSKLSEIVRDFKSTNRL-LLTGTPLQNNLHELWALLNFL 360
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A+ DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 361 LPDVFNSAE-DF-DSWFDTKNCLGDQ-KL---------VERLHTVLKP-FLLRRIK 403
Score = 97 (39.2 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 41/166 (24%), Positives = 74/166 (44%)
Query: 572 AVHSFQLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630
A+ +F + N K ++ +SA V+ + +P + LQA DRAHR GQ
Sbjct: 564 AIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKK 623
Query: 631 AVNIYIFCAKDTTDESHWQNLNKSLRC----------VSSATN--GKYDALQEIAVEGVS 678
V ++ +T +E + LR + +N K + LQ I G +
Sbjct: 624 PVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIR-HGAT 682
Query: 679 YLEMSDKTDRGSEDLT--LD--QVASSDQFQELMKVPESSEASDFR 720
++ S +++ ED+T L+ + +++ + L K+ ESS +FR
Sbjct: 683 HVFASKESELTDEDITTLLERGEKKTAEMNERLQKMGESS-LRNFR 727
Score = 70 (29.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 11/50 (22%), Positives = 31/50 (62%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
+ ++++IF+ ++LD ++++ +G + R+DG T +R+ + F++
Sbjct: 504 QGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDFKI 553
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 148 (57.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 58/246 (23%), Positives = 106/246 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
+K++IF ++++ +++F+ +G+ ++R+DG T DR + SF ++
Sbjct: 1119 HKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLST 1178
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQ + V I +++ +E +
Sbjct: 1179 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILE 1238
Query: 650 NLNKSLRCVSSATN-GKYD---ALQEIAVEGVSYLEMSDK------TDRGSEDLT---LD 696
+K L GK+D +E + +E D+ TD EDL L+
Sbjct: 1239 RAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELN 1298
Query: 697 QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNV 756
Q+ + ++ EL+ + E N ++L E K D P E +
Sbjct: 1299 QIIARNE-NELVVFRKMDEERYLATKNAPYPSRLYTEEELPEIYKID--PEELFKKEDVA 1355
Query: 757 SQYTGR 762
S+ GR
Sbjct: 1356 SEEYGR 1361
Score = 135 (52.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 58/255 (22%), Positives = 112/255 (43%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E + K P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ +
Sbjct: 765 IKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLV 824
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
G LV+ P +W E E+W P R H R ++
Sbjct: 825 EVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVL 884
Query: 298 YTMLHRLR-KSMIEQ-DWALLIVDESHHVR-CSKRTSEPEEXXXXXXXXXXXXRIVLLSG 354
T + ++ K ++ + W +I+DE H ++ + + SE R++L +G
Sbjct: 885 TTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSE-----TLTQNYHSDYRLIL-TG 938
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL-FQDFSKGVRLEEL 413
TP + +++ +N + P + K F + + G Q ++ + + + L
Sbjct: 939 TPLQNNLPELWALLNFVLPKIFNSVK-SFDEWFNTPFANTGGQDKIELTEEETLLVIRRL 997
Query: 414 NVLLKQTVMIRRLKQ 428
+ +L+ ++RRLK+
Sbjct: 998 HKVLRP-FLLRRLKK 1011
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 148 (57.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 58/246 (23%), Positives = 106/246 (43%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
+K++IF ++++ +++F+ +G+ ++R+DG T DR + SF ++
Sbjct: 1119 HKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLST 1178
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQ + V I +++ +E +
Sbjct: 1179 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILE 1238
Query: 650 NLNKSLRCVSSATN-GKYD---ALQEIAVEGVSYLEMSDK------TDRGSEDLT---LD 696
+K L GK+D +E + +E D+ TD EDL L+
Sbjct: 1239 RAHKKLEIDGKVIQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELN 1298
Query: 697 QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNV 756
Q+ + ++ EL+ + E N ++L E K D P E +
Sbjct: 1299 QIIARNE-NELVVFRKMDEERYLATKNAPYPSRLYTEEELPEIYKID--PEELFKKEDVA 1355
Query: 757 SQYTGR 762
S+ GR
Sbjct: 1356 SEEYGR 1361
Score = 135 (52.6 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 58/255 (22%), Positives = 112/255 (43%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E + K P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ +
Sbjct: 765 IKEEVTKQPSILVGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLV 824
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
G LV+ P +W E E+W P R H R ++
Sbjct: 825 EVKKIPGPFLVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVL 884
Query: 298 YTMLHRLR-KSMIEQ-DWALLIVDESHHVR-CSKRTSEPEEXXXXXXXXXXXXRIVLLSG 354
T + ++ K ++ + W +I+DE H ++ + + SE R++L +G
Sbjct: 885 TTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSE-----TLTQNYHSDYRLIL-TG 938
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL-FQDFSKGVRLEEL 413
TP + +++ +N + P + K F + + G Q ++ + + + L
Sbjct: 939 TPLQNNLPELWALLNFVLPKIFNSVK-SFDEWFNTPFANTGGQDKIELTEEETLLVIRRL 997
Query: 414 NVLLKQTVMIRRLKQ 428
+ +L+ ++RRLK+
Sbjct: 998 HKVLRP-FLLRRLKK 1011
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 165 (63.1 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 48/175 (27%), Positives = 76/175 (43%)
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
EW S + DI + R+ K+++++ + L V + + I VR DG
Sbjct: 718 EWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSA 777
Query: 567 RDRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
RQ ++HSF +V L+ + A +V+ E +PS+ QA DR HR
Sbjct: 778 NQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRL 837
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG-KYDALQEIAVEGVSYL 680
GQ V +Y F KDT +E K + V A + + + L + E + YL
Sbjct: 838 GQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYL 892
Score = 105 (42.0 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 37/117 (31%), Positives = 64/117 (54%)
Query: 197 LLDVILPFQLEGVRF--GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAG-----SIL 247
LL +LP Q+EG + + + +C ++AD+MGLGKT+Q IA+ S +++
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPLRKTNLI 305
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGH--RN-NPVHLTRFPRVVVISYTML 301
VV A+L WAEEL + +++ G +N + L+++ VV+ +Y+ML
Sbjct: 306 VVSVALLH-QWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYD-VVLTTYSML 360
Score = 51 (23.0 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 307 SMIEQDWALLIVDESHHVR 325
S++E W +++DE+H +R
Sbjct: 385 SLLETSWYRIVLDEAHTIR 403
Score = 44 (20.5 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 28 SATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQLP 69
++++ S R+ WR + F P P + P++++ LP
Sbjct: 80 TSSSLSTRK-RWRQKRLWSFKNFPFRPPTRLTSTPSNSSSLP 120
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 138 (53.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 348 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 407
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 408 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 467
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 468 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 527
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 528 HEEEFDLFMRM 538
Score = 138 (53.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 55/243 (22%), Positives = 112/243 (46%)
Query: 200 VILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPA 252
V+ +Q++G+ + L ++ADEMGLGKT+Q IA+ + G L++ P
Sbjct: 5 VLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 64
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHRLRKSMIE 310
+WA E ++W P + R V R + V++ +Y + + + + +
Sbjct: 65 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 124
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINM 370
W +IVDE H ++ + + R +LL+GTP ++ +++ +N
Sbjct: 125 IRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 179
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L P + K+ F + + + G + L ++ + + + L+ +L+ ++RRLK+ +
Sbjct: 180 LLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHKVLRP-FLLRRLKKEV 236
Query: 431 LVQ 433
Q
Sbjct: 237 EAQ 239
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 141 (54.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 71 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 130
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 131 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 190
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 191 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 245
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 246 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 303
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 304 VLRP-FLLRRLKKEVEAQ 320
Score = 136 (52.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 429 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 488
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 489 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE 545
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 159 (61.0 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 63/236 (26%), Positives = 110/236 (46%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ IA+ G +V+ P
Sbjct: 166 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKSTLH 225
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ- 311
+W E +RW+P C D + + + + V V SY M+ + KS+ ++
Sbjct: 226 NWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWD-VCVTSYEMVIK-EKSVFKKF 283
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE+H ++ +E + R+ LL+GTP + ++++ +N L
Sbjct: 284 HWRYLVIDEAHRIK-----NEKSKLSEIVREFKSTNRL-LLTGTPLQNNLHELWALLNFL 337
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
P + A DF ++ D K G Q +L +E L+ +LK ++RR+K
Sbjct: 338 LPDVFNSAD-DF-DSWFDTKNCLGDQ-KL---------VERLHAVLKP-FLLRRIK 380
Score = 118 (46.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 31/133 (23%), Positives = 63/133 (47%)
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS------------AV 573
+ + ++++IF+ ++LD ++++ +G + R+DG T +R++ A+
Sbjct: 478 IKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAI 537
Query: 574 HSFQLSNEVKXXXXXXXXXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
+F N K ++ +SA V+ + +P + LQA DRAHR GQ V
Sbjct: 538 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 597
Query: 633 NIYIFCAKDTTDE 645
++ +T +E
Sbjct: 598 RVFRLITDNTVEE 610
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 125 (49.1 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 108 QWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNV-VEKLSH 166
+WL ++++ +GG + K R+ L+ +S E + IP + + + K
Sbjct: 177 EWLLVQRVINHSEEPNGGTMYLVKWRE----LSYNDSSWERESDSIPGLNQAIALYKKLR 232
Query: 167 SIDTGRWN--PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGV---RFGLRRGGRCLI 221
S + GR P L+ + D+ + L ++ L + PFQ+EGV R+ +G ++
Sbjct: 233 SSNKGRQRDRPAPTIDLNKKYEDQPVF-LKEAGLK-LHPFQIEGVSWLRYSWGQGIPTIL 290
Query: 222 ADEMGLGKTLQAIA-IAACFISA---GSILVVCPAILRLSWAEELERWLP--FCL 270
ADEMGLGKT+Q + + + F G L+ P +W ELE W P +C+
Sbjct: 291 ADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCV 345
Score = 119 (46.9 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 61/283 (21%), Positives = 114/283 (40%)
Query: 482 DSGACCR---LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVNPRSNKMIIF 536
D CC L + +E I+ SG E S+ + D + + + ++++++F
Sbjct: 550 DLRKCCNHPYLFPSAAEEATISP-SGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLLF 608
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXXXXXXXXXX 595
+ K+L+ ++ F+ +G + RIDG+ RQ A+ F +E
Sbjct: 609 SQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLG 668
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
++ ++A V+ + +P +QA RAHR GQ V IY F ++ +E Q +
Sbjct: 669 INLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKM 728
Query: 656 RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSE 715
+ S E+ D G+EDL D + + + + V + +
Sbjct: 729 MLTHLVVRPGMGGM----TTNFSKDELEDILRFGTEDLFKDGKSEAIHYDD-KAVADLLD 783
Query: 716 ASDFRAINTNDEITAKMNDKLLEES---KTDHSPTETDDHHNN 755
++ R I + + S K DH E DD++N+
Sbjct: 784 RTN-RGIEEKESWANEYLSSFKVASYATKEDHE--EHDDYNND 823
Score = 79 (32.9 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 312 DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINML 371
DWA L+VDE+H +R S + ++ LL+GTP + ++FH +N L
Sbjct: 402 DWAALVVDEAHRLR-----SNQSKFFRILSKYRIGYKL-LLTGTPLQNNLEELFHLLNFL 455
Query: 372 WPGLLGKAKYDFAKTYCDV 390
G + F + DV
Sbjct: 456 SSGKFNDLQ-TFQAEFTDV 473
Score = 37 (18.1 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 473 TPKDSDEHDD 482
T +D +EHDD
Sbjct: 810 TKEDHEEHDD 819
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 143 (55.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 62/259 (23%), Positives = 117/259 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E++ + P L+ L +QL G+++ + L +ADEMGLGKT+Q I++ I
Sbjct: 401 IREVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLI 460
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCL------PADIHLVFGHRNNPVHLTRFP 291
G LV+ P +W E ERW P + P + H V + F
Sbjct: 461 EKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKAL-HPQ--VRHSNF- 516
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVL 351
+V++ +Y + + R + W +I+DE H ++ ++ + R++L
Sbjct: 517 QVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMK----NTQSKLTNTLTTYYSSRYRLIL 572
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQG--QLFQDFSKGVR 409
+GTP + +++ +N + P + K F + + G Q +L ++ S V
Sbjct: 573 -TGTPLQNNLPELWALLNFVLPRIFNSIK-SFDEWFNTPFANTGGQDKMELTEEESLLV- 629
Query: 410 LEELNVLLKQTVMIRRLKQ 428
+ L+ +L+ ++RRLK+
Sbjct: 630 IRRLHKVLRP-FLLRRLKK 647
Score = 135 (52.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 39/180 (21%), Positives = 80/180 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXXX 589
+++++F ++++ +++++ + ++R+DG+T DR + F + EV
Sbjct: 753 HRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLST 812
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQT V IY + + +E+
Sbjct: 813 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILA 872
Query: 650 NLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
L GK+D + E ++L + + G E+ D+ E++
Sbjct: 873 RAQYKLDIDGKVIQAGKFDN-KSTPEEREAFLRSLLENENGEEENDEKGELDDDELNEIL 931
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 157 (60.3 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 74/333 (22%), Positives = 140/333 (42%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 790 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 849
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 850 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 909
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + T S +++++
Sbjct: 910 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSTPSSSTPFNKEELSAIL 961
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I N+ + D+LL + K + +
Sbjct: 962 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1021
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + R + +P +S+ R + E R +EL+ + C K+ +
Sbjct: 1022 DDIELEPERNSR-NWEEIIP--ESQRRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1078
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1079 GRRSRSRRYSGSDSDSITERKRPKKRGRPRTIP 1111
Score = 124 (48.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 204 FQLEGVRFGLR--RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLS 257
+QL G+ +G C++ADEMGLGKT+Q I+ G L+V P S
Sbjct: 481 YQLNGLWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS 540
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKSM 308
W E++ W P + A ++L N + H P+ +++ +Y +L + + +
Sbjct: 541 WQREIQTWAPQ-MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL 599
Query: 309 IEQDWALLIVDESHHVR 325
+WA + VDE+H ++
Sbjct: 600 GGLNWAFIGVDEAHRLK 616
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 452 VSAKAAV-GVINDSEKDATNDKTPKDSDEHD 481
+S +V G +DSE + DK+ + E D
Sbjct: 149 MSGSGSVSGTGSDSESEEDGDKSSCEESESD 179
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 157 (60.3 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 74/333 (22%), Positives = 140/333 (42%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 790 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 849
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 850 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 909
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + T S +++++
Sbjct: 910 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSTPSSSTPFNKEELSAIL 961
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I N+ + D+LL + K + +
Sbjct: 962 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1021
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + R + +P +S+ R + E R +EL+ + C K+ +
Sbjct: 1022 DDIELEPERNSR-NWEEIIP--ESQRRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1078
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1079 GRRSRSRRYSGSDSDSITERKRPKKRGRPRTIP 1111
Score = 124 (48.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 204 FQLEGVRFGLR--RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLS 257
+QL G+ +G C++ADEMGLGKT+Q I+ G L+V P S
Sbjct: 481 YQLNGLWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS 540
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKSM 308
W E++ W P + A ++L N + H P+ +++ +Y +L + + +
Sbjct: 541 WQREIQTWAPQ-MNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL 599
Query: 309 IEQDWALLIVDESHHVR 325
+WA + VDE+H ++
Sbjct: 600 GGLNWAFIGVDEAHRLK 616
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 452 VSAKAAV-GVINDSEKDATNDKTPKDSDEHD 481
+S +V G +DSE + DK+ + E D
Sbjct: 149 MSGSGSVSGTGSDSESEEDGDKSSCEESESD 179
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 148 (57.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 54/202 (26%), Positives = 92/202 (45%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL--SNEVKXXXXX 588
++++IF+ +++LD + +++S KGI F R+DG R+ ++ F SN+
Sbjct: 712 HRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF-VFLLS 770
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ +A VV + +P LQA RAHR GQ + V +Y +KDT +E
Sbjct: 771 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 830
Query: 649 QNLNKSL----RCVS-SATNG-KYDALQEIAVEGVSYL------EMSDKTDRGS--EDLT 694
+ K + +S T+G KY E +S + M TD EDL
Sbjct: 831 ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLN 890
Query: 695 LDQVASSDQFQELMKVPESSEA 716
LD V + ++ + P+ E+
Sbjct: 891 LDDVLN--HAEDHVTTPDLGES 910
Score = 131 (51.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 49/190 (25%), Positives = 78/190 (41%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F +G ++ADEMGLGKT+Q +A + I A G ++V P
Sbjct: 379 FQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMP 438
Query: 257 SWAEELERWLPF--CL-------PADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRL 304
+W + E+W P C+ D + NP T V++ +Y + +
Sbjct: 439 AWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD 498
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDI 364
R + W + VDE+H R E +L++GTP + ++
Sbjct: 499 RAELGSIKWQFMAVDEAH------RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKEL 552
Query: 365 FHQINMLWPG 374
+N L PG
Sbjct: 553 AALVNFLMPG 562
Score = 48 (22.0 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 711 PESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDH 752
P + E S + TA N K LE+ D +DH
Sbjct: 860 PNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDH 901
Score = 41 (19.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 463 DSEKDATNDKTPKDSDEHDD 482
+ E+D+ D+ +D +E DD
Sbjct: 67 EGEEDSGEDEDEEDFEEDDD 86
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
S + + I D E + +++ +DS E +D
Sbjct: 48 SRRKRMTTIEDDEDEFEDEEGEEDSGEDED 77
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 176 (67.0 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 59/230 (25%), Positives = 105/230 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 788 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 847
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 848 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 907
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D +E S S+ ++ E+LT + + + D F+E
Sbjct: 908 IERAKKKM-VLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK--EELTAILKFGAEDLFKE 964
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESKTDHSPTETDD 751
L P+ + + R T + E++ D+LL + K + T D+
Sbjct: 965 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDE 1014
Score = 113 (44.8 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 48/186 (25%), Positives = 77/186 (41%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G L+V P
Sbjct: 469 YQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 528
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RNNP-----VH--LTRFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 529 SWQREFEIWAP---EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 585
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ +WA L VDE+H R + +L++GTP SL +
Sbjct: 586 TVLGSINWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 639
Query: 363 DIFHQI 368
+ H I
Sbjct: 640 SLLHFI 645
Score = 41 (19.5 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 867 EISHP-LPSGAEWKKVRICSGSRKKEKEYTQGWTINDE 903
E+ H +P E KK + C R K + W + D+
Sbjct: 1212 EMLHKSIPVDPEEKK-KYCLSCRVKAAHFDVEWGVEDD 1248
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 164 (62.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 53/225 (23%), Positives = 101/225 (44%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
D+ ++++IF KVLD +++F++ G ++R+DG T RQ F +++
Sbjct: 1002 DLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPV 1061
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ + A V+F + +P L QA+DR+HR GQT V+IY ++ T +
Sbjct: 1062 FILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVE 1121
Query: 645 ESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQF 704
+ + N+ G + V L++ D D + + D + S +
Sbjct: 1122 SNMLRRANQKRMLDKIVIQGGEFTTEWFRKADV--LDLFDLDDESLKKVKADSDSGSTKN 1179
Query: 705 QELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTET 749
+E +V ++ A D + ++ K + LE+ T+ S T T
Sbjct: 1180 EENWEVALAA-AEDEEDVQAA-QVARK--ESALEQ--TEFSETST 1218
Score = 113 (44.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 51/227 (22%), Positives = 104/227 (45%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q IA+ A G L++ P + L+W E +++LP I
Sbjct: 469 ILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLP---GFKIL 525
Query: 276 LVFGH------RNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
+G+ + + + V + SY ++ + + + W +I+DE+H+++ +
Sbjct: 526 TYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFR- 584
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ R+ LL+GTP + +++ + L P G + + A + +
Sbjct: 585 ----SQRWQSLLNFNAEHRL-LLTGTPLQNNLVELWSLLYFLMPA--GVTQNNSA--FAN 635
Query: 390 VKTVQGY----QGQLFQDFSKGVRLEELNVLLK-----QTVMIRRLK 427
+K Q + +L ++ + + E +N + K + ++RRLK
Sbjct: 636 LKDFQDWFSKPMDRLIEE-GQDMNPEAMNTVAKLHRVLRPYLLRRLK 681
Score = 37 (18.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 113 VMPSHYTQNNS 123
+MP+ TQNNS
Sbjct: 621 LMPAGVTQNNS 631
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 134 (52.2 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ + + ++++I+ +LD ++++ + K + RIDG +RQ + F N K
Sbjct: 605 VKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNK 664
Query: 584 X-XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ ++A V+ + +P LQA RAHR GQT+ V IY + T
Sbjct: 665 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGT 724
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDL 693
+E Q L K + GK + + ++ E+ D GS++L
Sbjct: 725 IEERMMQ-LTKKKMVLEHLVVGK------LKTQNINQEELDDIIRYGSKEL 768
Score = 131 (51.2 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI--LV 248
P+ L ++ P+QLEG+ RF + ++ADEMGLGKT+Q+IA+ A I LV
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLV 325
Query: 249 VCPAILRLSWAEELERWLP 267
+ P +W E W P
Sbjct: 326 IAPLSTLRNWEREFATWAP 344
Score = 71 (30.1 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 24/99 (24%), Positives = 49/99 (49%)
Query: 293 VVVISYTMLHRLRKSMIEQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVL 351
V++ SY M++ L ++++ W +IVDE H ++ ++ + RI L
Sbjct: 396 VLLTSYEMIN-LDSAVLKPIKWECMIVDEGHRLK-----NKDSKLFSSLTQYSSNHRI-L 448
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
L+GTP + ++F ++ L G G + +F + + D+
Sbjct: 449 LTGTPLQNNLDELFMLMHFLDAGKFGSLE-EFQEEFKDI 486
Score = 37 (18.1 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 21/104 (20%), Positives = 40/104 (38%)
Query: 671 EIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITA 730
EIA ++ D+ R S ++ S + E + +S + INT IT+
Sbjct: 1258 EIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRALKSINGN----INTILSITS 1313
Query: 731 KMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDS 774
+ +++K D + E D G + + V G ++
Sbjct: 1314 DQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVDLNVVEGEEN 1357
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 153 (58.9 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 42/144 (29%), Positives = 71/144 (49%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G+ + R+DG+T +R V F + +V
Sbjct: 459 DKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNSTQDVNICLVSTM 518
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A VV + +P+ LQA DRA+R GQ V + + T +E +
Sbjct: 519 AGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLR 578
Query: 649 QNLNKSLRCVS-SATNGK-YDALQ 670
Q + L CV + N K Y+A+Q
Sbjct: 579 QLYKQQLHCVVVGSENAKRYEAVQ 602
Score = 85 (35.0 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 37/147 (25%), Positives = 69/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P + +W +EL+ W F + ++ G++ + + R I+ T LR
Sbjct: 135 LIVAPLSVLYNWRDELDTWGYF----RVTILHGNKKDNELIRVKQRKCEIALTTYETLRL 190
Query: 307 SMIEQ---DWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ E +W+ +IVDE+H ++ K R +E + RI L +GT +
Sbjct: 191 CLDELNSLEWSAVIVDEAHRIKNPKARITEVMKALKCNV------RIGL-TGTILQNNMK 243
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG ++ F K + D
Sbjct: 244 ELWCVMDWAVPGLLG-SEIHFKKHFSD 269
Score = 80 (33.2 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGGR-CLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG +F G GR C++ D+MGLGKT+Q I+ A +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAVL 104
Score = 46 (21.3 bits), Expect = 4.0e-14, Sum P(4) = 4.0e-14
Identities = 23/116 (19%), Positives = 48/116 (41%)
Query: 655 LRC-VSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPES 713
L+C S KY A+++ + S E SD+ D A + Q + + +
Sbjct: 723 LQCGFSKLFETKYKAVEDSDGDTASDDESSDEQPTCLSTEAKD--AGCQKSQGSLGISKP 780
Query: 714 SEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCV 769
+ +N +++ ++K+LE++ + S E D ++ H+Y+ V
Sbjct: 781 RRLAS--PLNPSEKCILGKSEKILEQNVSSESDDEAIDEFSSSDDDLSVGHIYTLV 834
Score = 44 (20.5 bits), Expect = 6.3e-14, Sum P(4) = 6.3e-14
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDE 727
S+KT LTL Q S F+ K E S+ ++DE
Sbjct: 710 SNKTSGSPGQLTLLQCGFSKLFETKYKAVEDSDGDTASDDESSDE 754
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 706 ELMKVPESSEASDFRAINTNDEI------TAKMNDKLLEESKTDHSP 746
E + P + EA DF + + DE+ TAK +K + +KT SP
Sbjct: 673 EQLAEPLAKEACDFCSDFSEDELGNSVVKTAK--NKASDSNKTSGSP 717
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 162 (62.1 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 58/215 (26%), Positives = 101/215 (46%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ ++LD +++ + I +VR+DG+T RQ + F +V
Sbjct: 941 SRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTK 1000
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+ + +P LQAEDRAHR GQ V + I D T E + Q
Sbjct: 1001 AGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTV-IRLITDNTIEEYIQK 1059
Query: 651 L-NKSLRC-VSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
L N L +S +++GK D +EI V +M D+ + G+ T ++ ++ E
Sbjct: 1060 LANTKLALDMSLSSDGK-DR-EEIGERLVQ--DMLDEENNGNN--TKPEITGNESDGEF- 1112
Query: 709 KVPESSEASDFRAINTNDEITAKMNDKLLEESKTD 743
KV S+ + A TN + + + E KTD
Sbjct: 1113 KVSSSNNSKQTDAEETNTGVPLEGSQPNSVE-KTD 1146
Score = 115 (45.5 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 71/315 (22%), Positives = 122/315 (38%)
Query: 188 EMIGKLPKSLL-DVILP-FQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
+ + + PK+L DV L +QL GV + + G ++ADEMGLGKT Q +A A
Sbjct: 535 KFVTEQPKTLASDVQLKSYQLVGVNWLHLLYQQKLSG--ILADEMGLGKTCQVVAFFALL 592
Query: 241 ISAGSI---LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
+ G LVV P+ +W EL R FC + +G + ++ I
Sbjct: 593 LEQGHHGPHLVVVPSSTLENWLRELAR---FCPSLRVEPYYGSQQERANIREAIEENEIK 649
Query: 298 YTML---HRL-------RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
Y +L ++L R + Q++ + + DE H+++ R SE +
Sbjct: 650 YDILVTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLK--NRMSERYKHLMNLNANFR-- 705
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
+LL+GTP + ++ + + P + D + K + Q
Sbjct: 706 --LLLTGTPLQNNLKELVSLLAFILPNMFDSDMDDLDVIF---KAKPTADADIEQALLSK 760
Query: 408 VRLEELNVLLKQTVMIRRLKQHLL-VQXXXXXXXXXXXXXXXSEIVSAKAAVGVINDSEK 466
R+ ++ V+ RR Q L + EI + AA+ +
Sbjct: 761 QRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRR 820
Query: 467 DATNDKTPKDSDEHD 481
D +K K+ +E D
Sbjct: 821 DDKRNKRSKNDEESD 835
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 134 (52.2 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 51/236 (21%), Positives = 99/236 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 973 HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLST 1032
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1033 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1092
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
+ + + ++ E+ D G+E+L D V
Sbjct: 1093 VAKRKMMLTHLVVRPGLGSKSG----SMTKQELDDILKFGTEELFKDDVEGG-------- 1140
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNN---VSQYTGR 762
V ++ + D I+ +D +K+ D+ + TD + + + + + V+QY R
Sbjct: 1141 VSDNKDVDDSSVIHYDDAAISKLLDR--NQDATDDTELQNMNEYLSSFKVAQYVVR 1194
Score = 118 (46.6 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-----SAGSILVVCPAIL 254
P+QLEG+ RF +G ++ADEMGLGKT+Q I S G LV P
Sbjct: 633 PYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLST 692
Query: 255 RLSWAEELERWLP 267
++W E E W P
Sbjct: 693 IINWEREFEMWAP 705
Score = 79 (32.9 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 33/135 (24%), Positives = 66/135 (48%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + + +WA L+VDE+H ++ + + ++ LL
Sbjct: 753 VLLTSYELITIDQAVLGSIEWACLVVDEAHRLK-----NNQSKFFRVLNSYKIDYKL-LL 806
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 807 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 851
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 852 LHDLLGPH-MLRRLK 865
Score = 41 (19.5 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 708 MKVPESSEASDFRAINTNDEITAKMNDKLLEESK 741
+KVP S+E + N E K+ ++ EE++
Sbjct: 1526 IKVPGSTEKVESEEYQENCESKEKLKEEKQEENE 1559
Score = 40 (19.1 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 456 AAVGVINDSEKDATNDKTPKDSDEH 480
AA+ + D +DAT+D ++ +E+
Sbjct: 1158 AAISKLLDRNQDATDDTELQNMNEY 1182
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 141 (54.7 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 537 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 596
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 597 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 656
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 657 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 711
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 712 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 769
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 770 VLRP-FLLRRLKKEVEAQ 786
Score = 136 (52.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 895 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 954
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 955 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE 1011
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 133 (51.9 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+H +K+L ++ + +DG+ +RQ V F +
Sbjct: 588 DKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQFVFLISTK 647
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ +SA VV + +PS LQA+DRA+R GQT V+++ ++ T +E
Sbjct: 648 AGGVGLNITSANKVVIFDPHWNPSWDLQAQDRAYRIGQTRDVDVFRLVSQGTIEE 702
Score = 102 (41.0 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 172 RWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFG-----LRRGGRCLIADEMG 226
R PCRP D ++ G +P + + +Q++GV F +RG C++ D+MG
Sbjct: 167 RIKPCRP--YEDVELERSAGIIPAPIAQYLRDYQVDGVSFMHEAFVYQRG--CILGDDMG 222
Query: 227 LGKTLQAIA-IAACFISAG 244
LGKT+Q A + A F G
Sbjct: 223 LGKTVQVAAFLTAAFGKTG 241
Score = 91 (37.1 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 34/134 (25%), Positives = 65/134 (48%)
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-VVISYTMLHRL 304
+LVVCP+ + +W +EL RW + H G +++ + + R+ V+++ +RL
Sbjct: 262 VLVVCPSSVMENWRQELARW-GWWKVESYHGP-G-KDDVLDTAKSGRLEVMLTTPATYRL 318
Query: 305 RKSMIEQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYD 363
+K + W ++VDE H+++ +R SE RI L +GT ++ +
Sbjct: 319 QKERVNTVSWDAVVVDECHNIK--ERRSE---ITKAMTEVNALCRIGL-TGTAIQNKYEE 372
Query: 364 IFHQINMLWPGLLG 377
++ +N PG G
Sbjct: 373 LWTLLNWTNPGRFG 386
Score = 42 (19.8 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASD 718
S++ K + +E + G+ ++ K +E D S + + + PES ++ D
Sbjct: 1007 STSARTKTEVPEEHGMVGLENVQTKSKVQIKNEAGVAD---SKVKMEPVNDEPES-DSDD 1062
Query: 719 FRAINTNDEITAKM 732
A+ DE +K+
Sbjct: 1063 LDAVKVKDEDLSKI 1076
Score = 40 (19.1 bits), Expect = 9.0e-05, Sum P(4) = 9.0e-05
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQN 603
D +Q +S G+G+ + + + A QLS + + + F+ +Q+
Sbjct: 836 DAIQAILSSAGVGYTHDNAEVVGTSKVEA----QLSRKAERDHEIDEKEALKVLFADSQD 891
Query: 604 V 604
V
Sbjct: 892 V 892
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 730 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 789
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 790 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 849
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 850 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 904
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 905 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 962
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 963 VLRP-FLLRRLKKEVEAQ 979
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1088 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1147
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1148 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1207
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1208 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1267
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1268 HEEEFDLFMRM 1278
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1215
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1216 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1276 HEEEFDLFMRM 1286
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1215
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1216 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1276 HEEEFDLFMRM 1286
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1215
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1216 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1276 HEEEFDLFMRM 1286
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1215
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1216 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1276 HEEEFDLFMRM 1286
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 141 (54.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 138 (53.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 39/191 (20%), Positives = 90/191 (47%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1215
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1216 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIAR 1275
Query: 701 -SDQFQELMKV 710
++F M++
Sbjct: 1276 HEEEFDLFMRM 1286
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 154 (59.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 38/152 (25%), Positives = 75/152 (49%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ +D ++ + + + FVR+DG T DRQS + +F + ++
Sbjct: 943 DRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQSIMDTFHENTDIPVFLLSTK 1002
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+ + +P +QAE+RAHR GQT V + KDT +E +
Sbjct: 1003 AGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREVEVIRLVTKDTIEEQIYA- 1061
Query: 651 LNKSLRCVSSATNGKYDALQEIAVE-GVSYLE 681
L ++ + A G+ A + + E G+ +E
Sbjct: 1062 LGQTKLALDQAVAGEDGADSKKSEEAGIKAVE 1093
Score = 121 (47.7 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 59/225 (26%), Positives = 97/225 (43%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFC--LP-- 271
C++AD+MGLGKT Q IA A G LVV P+ +W E +++ P +P
Sbjct: 585 CILADDMGLGKTCQVIAFLAHLYEKGIKGPHLVVVPSSTIENWLREFQKFCPTLSVMPYY 644
Query: 272 ADIHLVFGHRNNPVHLTRFP-RVVVISYTMLH-RLRKSMIEQ-DWALLIVDESHHVRCSK 328
AD + V + R VV+ +YT+ ++ + D+ + DE H ++ S
Sbjct: 645 ADQN-VRAQIREQIEGNRDDINVVITTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSS- 702
Query: 329 RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
TS E +LL+GTP + ++ + + P + + K D +
Sbjct: 703 -TSVLYEKLIRIRARFR----LLLTGTPLQNNLQELASLLGFILPKVFQERKDDLQYIFS 757
Query: 389 D-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ KTV L R+E +LK V+ RR K+H ++
Sbjct: 758 NKAKTVDESHSALLS----AQRIERAKSMLKPFVL-RR-KKHQVI 796
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 156 (60.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 33/129 (25%), Positives = 65/129 (50%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
++ + ++ +IF KVLD +++F++ G ++R+DG T DRQ F ++
Sbjct: 1377 ELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPV 1436
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ + A V+F + +P++ Q +DR HR GQ V+IY F ++ T +
Sbjct: 1437 FILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIE 1496
Query: 645 ESHWQNLNK 653
+ + N+
Sbjct: 1497 SNIIKKANQ 1505
Score = 122 (48.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 45/191 (23%), Positives = 85/191 (44%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISA----GS 245
+P L + P+Q +G+ + L ++ADEMGLGKT+Q I++ A G
Sbjct: 815 IPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLH 302
L++ P + L+W E +++ P + R P V + SY ++
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVV 934
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ ++S + W +I+DE+H+++ + T R+ LL+GTP +
Sbjct: 935 QDQQSFKRRRWTYMILDEAHNIKNFRSTR-----WRALLNFNTENRL-LLTGTPLQNNLM 988
Query: 363 DIFHQINMLWP 373
+++ + L P
Sbjct: 989 ELWSLLYFLMP 999
Score = 39 (18.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500
V +D E+++ +S + DD+ L + YQ +A
Sbjct: 629 VTSDKERESETSSEDAESSDDDDTDVTRGLASL-YQNDEVA 668
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 130 (50.8 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
+K ++FA H +LD +++F+ S G + R+DG T + RQ+ V F ++
Sbjct: 753 HKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQTMVDEFNKDPDLHVFLLTT 812
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + A V+ + +PS +QA +RA R GQ V IY T +E
Sbjct: 813 KVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTIYRLMTAGTIEE 868
Score = 123 (48.4 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 192 KLPKSLLDVILPFQLEGVRF--GLRR---GGRCLIADEMGLGKTLQAIA-IAACFIS--- 242
++P + ++ +Q GV++ L + GG +I DEMGLGKT+QAIA +A S
Sbjct: 389 RIPGDIHPLLFDYQKTGVQWMWELHQQQVGG--IIGDEMGLGKTIQAIAFLAGLHYSKRL 446
Query: 243 AGSILVVCPAILRLSWAEELERWLP 267
I+VVCPA + W E RW P
Sbjct: 447 TKPIIVVCPATVMKQWVNEFHRWWP 471
Score = 71 (30.1 bits), Expect = 5.8e-14, Sum P(3) = 5.8e-14
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V+V +Y+ L +I +W I+DE H +R P ++L
Sbjct: 528 VLVTTYSGLQSYASLLIPVEWGGTILDEGHKIR------NPNTSITMHAKELRTPHRIIL 581
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLG 377
SGTP + +++ + ++P LG
Sbjct: 582 SGTPMQNNLTELWSLFDFVFPMRLG 606
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 142 (55.0 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 50/192 (26%), Positives = 83/192 (43%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILV 248
P+ L + +QLEG+ R+ + ++ADEMGLGKT+Q+IA A + LV
Sbjct: 218 PEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENLSPHLV 277
Query: 249 VCPAILRLSWAEELERWLPFC----LPADIH---LVFGHRN--NPVHLTRFPRVVVISYT 299
V P +W E W P D +++ H + ++F V++ +Y
Sbjct: 278 VAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFD-VLLTTYE 336
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
M+H + W +I+DE H ++ K IVLL+GTP +
Sbjct: 337 MVHPGISVLSPIKWTCMIIDEGHRLKNQK------SKLYSSLSQFTSKHIVLLTGTPLQN 390
Query: 360 RPYDIFHQINML 371
++F ++ L
Sbjct: 391 NLNELFALMHFL 402
Score = 128 (50.1 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 45/207 (21%), Positives = 85/207 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ + + ++++I+ L ++++ + K + RIDG +RQ + F N +
Sbjct: 534 VKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNR 593
Query: 584 X-XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ ++A V+ + +P LQA R HR GQT+ V IY K T
Sbjct: 594 FCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGT 653
Query: 643 TDESHWQNLNKSLRCVSSATNGKY----DALQEIAVEGVSYL--EMSDKTDRGS----ED 692
+E + K+ + GK D L +I G L E +D+ R +D
Sbjct: 654 VEE-RMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEAGRSGKIHYDD 712
Query: 693 LTLDQVASSDQFQELMKVPESSEASDF 719
++Q+ + + + E +DF
Sbjct: 713 AAIEQLLDRNHVDAVEVSLDDEEETDF 739
Score = 52 (23.4 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 725 NDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGR-IHLYSCVPGTDSRPRPLFESF 783
ND IT+K N ++K + +V++ +G Y + + PR ESF
Sbjct: 1113 NDPITSKKNSATAVDNKQGRVEM-AQSYDQSVNEKSGESFQTYLDIQPLNRMPR---ESF 1168
Query: 784 RPEELDNTE 792
+P E N E
Sbjct: 1169 KPLEPINEE 1177
Score = 46 (21.3 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
FQD +K ++ L+ +L ++RRLK+ +L
Sbjct: 413 FQDINKEEQISRLHQMLAPH-LLRRLKKDVL 442
Score = 43 (20.2 bits), Expect = 0.00025, Sum P(4) = 0.00025
Identities = 36/152 (23%), Positives = 63/152 (41%)
Query: 668 ALQEI-AVEGVSYLEMSDKTDRGSEDLTLD--QVASSDQFQELMKVPESSEASDFRAINT 724
AL+E A+E S + +D+T +DL D +V +++ L K + + + +
Sbjct: 759 ALEEAQAIENNSSVRNADRTSHW-KDLLKDKYEVQQAEELSALGKRKRNGKQVMYAEDDL 817
Query: 725 N--DEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFES 782
+ +EI+ + ++ L++ K E D Q P T +RP
Sbjct: 818 DGLEEISDEEDEYCLDDLKVTSDEEEEADEPEAARQRK---------PRTVTRP------ 862
Query: 783 FRPEELDNTEHISGCLKENPGYRHAIQAFINE 814
+R DN+E I L E G R+ + NE
Sbjct: 863 YRKRARDNSEEIP--LMEGEG-RYLMVLGFNE 891
Score = 40 (19.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 449 SEIVSAKAAVGVINDSEKDATND 471
+E +S + +VG +D E DA ++
Sbjct: 1175 NEEISTRLSVGTDHDVEMDAADN 1197
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 867 EISHPLPSGAEWKKVRICS--GSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAE 922
+++ P P + + RIC G R K+ E + ++ L + + K + +AE
Sbjct: 1050 DLNIPFPPDTKSARKRICDHVGKRVKKMEDAIKYEYAEKILAEQAKAETKGTSFVDAE 1107
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 147 (56.8 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G+ + R+DG+T +R V F + +V
Sbjct: 462 DKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNSTQDVNICLVSTM 521
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A VV + +P+ LQA DRA+R GQ V + + T +E +
Sbjct: 522 AGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLR 581
Query: 649 QNLNKSLRCVS-SATNGK--YDALQ 670
Q + L CV + N K ++A+Q
Sbjct: 582 QVYKQQLHCVVVGSENAKRYFEAVQ 606
Score = 89 (36.4 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 37/147 (25%), Positives = 68/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P + +W +EL+ W F + ++ G++ + + R I+ T LR
Sbjct: 138 LIVAPLSVLYNWKDELDTWGYF----RVTILHGNKKDSELIRVKQRKCEIALTTYETLRL 193
Query: 307 SMIEQ---DWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ E +W+ +IVDE+H ++ K R +E RI L +GT +
Sbjct: 194 CLDELNSLEWSAVIVDEAHRIKNPKARVTE------IMKALRCNVRIGL-TGTILQNNMK 246
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG ++ F K + D
Sbjct: 247 ELWCVMDWAVPGLLG-SRIHFKKQFSD 272
Score = 80 (33.2 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGGR-CLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG +F G GR C++ D+MGLGKT+Q I+ A +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAVL 104
Score = 46 (21.3 bits), Expect = 6.2e-14, Sum P(4) = 6.2e-14
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 686 TDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHS 745
TD T+D +SSD + + S + + I +++K+ + +
Sbjct: 787 TDEDCNSQTIDDFSSSDDNLSVGHISFSKQNHRPKTIKDKISVSSKLTNHKRNSTFIPRK 846
Query: 746 PTETDDHH 753
P DD +
Sbjct: 847 PINRDDKY 854
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 179 (68.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 68/229 (29%), Positives = 106/229 (46%)
Query: 219 CLIADEMGLGKTLQAIAIAACFIS----AGS-----ILVVCPAILRLSWAEELERWL--- 266
C++ADEMGLGKTLQ IA+ + AG ++ CP+ L +WA EL +WL
Sbjct: 290 CIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKD 349
Query: 267 ---PFCLPADI---HLVFGHRN-NPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALLIV 318
PF L L+ + VH + R V+I SY L + + + +L+
Sbjct: 350 AITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLC 409
Query: 319 DESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
DE H ++ S + R V+LSGTP + + F +N PGLLG
Sbjct: 410 DEGHRLKNS------DSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLG- 462
Query: 379 AKYDFAKTYCDVKTVQGYQGQ-LFQDFSKG-VRLEELNVLLKQTVMIRR 425
++ +F K Y ++ ++G +D G +L EL ++ + + IRR
Sbjct: 463 SRQEFRKNY-EIPILKGRDADGTEKDKENGDAKLAELAKIVNRFI-IRR 509
Score = 127 (49.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 36/90 (40%), Positives = 49/90 (54%)
Query: 194 PKSLLDVILPFQLEGVRF------GL--RRGGRCLIADEMGLGKTLQAIAIAACFIS--- 242
PK L ++ P Q+EGV+F G R C++ADEMGLGKTLQ IA+ +
Sbjct: 258 PK-LARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSP 316
Query: 243 -AGS-----ILVVCPAILRLSWAEELERWL 266
AG ++ CP+ L +WA EL +WL
Sbjct: 317 QAGKPTIEKAIITCPSSLVKNWANELVKWL 346
Score = 91 (37.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 30/158 (18%), Positives = 64/158 (40%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXXX 589
+K+++ +++ LD ++ +G +R+DG RQ V +F +
Sbjct: 628 DKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSS 687
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ A ++ + +P+ QA R R GQ +Y F A T +E +Q
Sbjct: 688 KAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQ 747
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYL-EMSDKT 686
+ S + D + +++ + L +++D T
Sbjct: 748 RQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQLNDHT 785
Score = 41 (19.5 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 723 NTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLY 766
N + ++ KM L+ E ETDD +S YT + L+
Sbjct: 603 NIDSSLSGKM---LVLERMLYQIKQETDDKIVLISNYTSTLDLF 643
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 148 (57.2 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G + R+DG+T +R V F + +V
Sbjct: 463 DKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQDVNICLVSTM 522
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A VV + +P+ LQA DRA+R GQ V ++ + T +E +
Sbjct: 523 AGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLR 582
Query: 649 QNLNKSLRCVS-SATNGK--YDALQ 670
Q + L CV + N K ++A+Q
Sbjct: 583 QVYKQQLHCVVVGSENAKRYFEAVQ 607
Score = 88 (36.0 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 36/147 (24%), Positives = 69/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR--NNPVHLT-RFPRVVVISYTMLHR 303
L+V P + +W +EL+ W F + ++ G++ N V + R + + +Y L
Sbjct: 139 LIVAPLSVLYNWRDELDTWGYF----RVTILHGNKKDNELVRVKQRKCEIALTTYETLRL 194
Query: 304 LRKSMIEQDWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ +W+ +IVDE+H ++ K R +E + RI L +GT +
Sbjct: 195 CLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNV------RIGL-TGTILQNNMK 247
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG ++ F K + D
Sbjct: 248 ELWCVMDWAVPGLLG-SRIHFKKQFSD 273
Score = 79 (32.9 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 193 LPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG +F +G C++ D+MGLGKT+Q I+ A +
Sbjct: 53 IPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVL 104
Score = 47 (21.6 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 722 INTNDEITAKMNDKLLEESKTDHSPTE-----TDDHH 753
+N N++ T ++K+ E++ + S E T DHH
Sbjct: 793 LNPNEKCTFDKSEKIFEQNISSESDDEKKFKNTADHH 829
Score = 37 (18.1 bits), Expect = 6.7e-13, Sum P(4) = 6.7e-13
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKL 736
+AS D+ + + S EA D ++D + + KL
Sbjct: 751 IASDDESSDEQPMCLSVEAKDVGYQKSHDSLGTSQHQKL 789
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 160 (61.4 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 36/125 (28%), Positives = 62/125 (49%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++ +IF K+LD + F++ ++R+DG+T RQ F ++
Sbjct: 1394 QGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLFILS 1453
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
L+ + A V+F + +PS+ QA+DR HR GQT VNIY F + T +E+
Sbjct: 1454 TRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEENIL 1513
Query: 649 QNLNK 653
+ N+
Sbjct: 1514 KKSNQ 1518
Score = 128 (50.1 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 52/217 (23%), Positives = 101/217 (46%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA-----GSILVVCPAILRLSWAEELERWLPFCLPADI 274
++ADEMGLGKT+ I++ A +++ G L+V P+ + +W E +RW P
Sbjct: 803 ILADEMGLGKTIMTISLIA-YLAVQKGVWGPHLIVVPSSVLFNWEMEFKRWCPGLKIFTY 861
Query: 275 HLVFGHRN-NPVHLTRFP--RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
H R N ++ V + SY+M+ + W +I+DE+H ++ K T
Sbjct: 862 HGTSRDRKANRKGWSKSNAFHVCITSYSMVMSDHLIFRRKKWVYMILDEAHVIKNFK-TQ 920
Query: 332 EPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+ R +LL+GTP + +++ ++ L P + ++ +F + +
Sbjct: 921 RWQNMLHFNTE-----RRLLLTGTPLQNNLMELWSLMHFLMPDIF-QSHREFQDWFSNPV 974
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
T G D ++ + + L+ +L+ ++RRLK+
Sbjct: 975 TGMIEGGD---DVNEDI-INRLHAVLRP-FLLRRLKK 1006
Score = 59 (25.8 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 684 DKTDRGSEDLTLDQVASSDQFQELMKV--PESSEASDFRAINTNDEITAKMNDKLLEESK 741
+K + +D DQ DQ +++ P++ E D N N+ N+ L
Sbjct: 1795 EKENERDKDKDKDQDQDKDQEMKIINEIPPKNDEDEDNNINNNNNNNNNNNNNNLSNNGN 1854
Query: 742 TDHSPTETDDHHNN 755
D++ ++++NN
Sbjct: 1855 GDNNNNNNNNNNNN 1868
Score = 38 (18.4 bits), Expect = 8.5e-12, Sum P(4) = 8.5e-12
Identities = 10/59 (16%), Positives = 22/59 (37%)
Query: 697 QVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNN 755
Q Q Q+ + + + ++ D+ K N+K E + + E + +N
Sbjct: 1705 QKQQQQQQQQQQQQQQQQQQPKILKLDEKDKENLKENEKEKENENENENENENEKEKDN 1763
Score = 37 (18.1 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 51 PTHFPKSALADPN-STTQLPENFRVRLEICSPDSFSVTPLA 90
PT + ++ N +TT P R L + SP + LA
Sbjct: 37 PTLSEDTVTSNTNPTTTTTPRQTRSSLSLSSPSIDNTIALA 77
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 140 (54.3 bits), Expect = 7.3e-14, Sum P(4) = 7.3e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1180 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1229
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1230 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1273
Score = 118 (46.6 bits), Expect = 7.3e-14, Sum P(4) = 7.3e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 721 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 780
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 781 INWEREFEMWAP 792
Score = 78 (32.5 bits), Expect = 7.3e-14, Sum P(4) = 7.3e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 840 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 893
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 894 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 930
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1219 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1271
Score = 40 (19.1 bits), Expect = 7.3e-14, Sum P(4) = 7.3e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 509 PTPVPRPPDADPNTPSPKP 527
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 140 (54.3 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1187 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1236
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1237 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1280
Score = 118 (46.6 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 728 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 787
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 788 INWEREFEMWAP 799
Score = 78 (32.5 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 847 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 900
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 901 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 937
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1226 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1278
Score = 40 (19.1 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 516 PTPVPRPPDADPNTPSPKP 534
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 140 (54.3 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1187 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1236
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1237 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1280
Score = 118 (46.6 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 728 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 787
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 788 INWEREFEMWAP 799
Score = 78 (32.5 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 847 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 900
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 901 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 937
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1226 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1278
Score = 40 (19.1 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 516 PTPVPRPPDADPNTPSPKP 534
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 140 (54.3 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1126
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1127 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1186
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1187 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1236
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1237 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1280
Score = 118 (46.6 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 728 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 787
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 788 INWEREFEMWAP 799
Score = 78 (32.5 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 847 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 900
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 901 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 937
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1226 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1278
Score = 40 (19.1 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 516 PTPVPRPPDADPNTPSPKP 534
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 140 (54.3 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1180 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1229
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1230 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1273
Score = 118 (46.6 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 721 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 780
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 781 INWEREFEMWAP 792
Score = 78 (32.5 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 840 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 893
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 894 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 930
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1219 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1271
Score = 40 (19.1 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 509 PTPVPRPPDADPNTPSPKP 527
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 140 (54.3 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1119
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1179
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1180 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1229
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1230 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1273
Score = 118 (46.6 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 721 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 780
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 781 INWEREFEMWAP 792
Score = 78 (32.5 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 840 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 893
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 894 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 930
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1219 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1271
Score = 40 (19.1 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 509 PTPVPRPPDADPNTPSPKP 527
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 140 (54.3 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1087 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1146
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1147 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1206
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1207 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1256
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1257 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1300
Score = 118 (46.6 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 748 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 807
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 808 INWEREFEMWAP 819
Score = 78 (32.5 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 867 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 920
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 921 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 957
Score = 42 (19.8 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1246 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1298
Score = 40 (19.1 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 536 PTPVPRPPDADPNTPSPKP 554
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 140 (54.3 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1089 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1148
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1149 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1208
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1209 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1258
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1259 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1302
Score = 118 (46.6 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 750 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 809
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 810 INWEREFEMWAP 821
Score = 78 (32.5 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 869 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 922
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 923 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 959
Score = 42 (19.8 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1248 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1300
Score = 40 (19.1 bits), Expect = 7.8e-14, Sum P(4) = 7.8e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 538 PTPVPRPPDADPNTPSPKP 556
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 141 (54.7 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 136 (52.9 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE 1212
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 140 (54.3 bits), Expect = 8.0e-14, Sum P(4) = 8.0e-14
Identities = 50/230 (21%), Positives = 95/230 (41%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXXXX 589
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1088 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLST 1147
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F + + +E Q
Sbjct: 1148 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQ 1207
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
K + + +S E+ D G+E+L D+
Sbjct: 1208 VAKKKMMLTHLVVRPGLGS----KTGSMSKQELDDILKFGTEELFKDEATDGGG------ 1257
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQY 759
++ E D I+ +D K ++LL+ ++ + TE + +S +
Sbjct: 1258 --DNKEGEDSSVIHYDD----KAIERLLDRNQDETEDTELQGMNEYLSSF 1301
Score = 118 (46.6 bits), Expect = 8.0e-14, Sum P(4) = 8.0e-14
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPAILR 255
P+Q+EG+ RF +G ++ADEMGLGKT+Q A+ + + + S G LV P
Sbjct: 749 PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 808
Query: 256 LSWAEELERWLP 267
++W E E W P
Sbjct: 809 INWEREFEMWAP 820
Score = 78 (32.5 bits), Expect = 8.0e-14, Sum P(4) = 8.0e-14
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + DWA LIVDE+H R + +LL
Sbjct: 868 VLLTSYELITIDMAILGSIDWACLIVDEAH------RLKNNQSKFFRVLNGYSLQHKLLL 921
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+GTP + ++FH +N L P + F + + D+
Sbjct: 922 TGTPLQNNLEELFHLLNFLTPERFHNLE-GFLEEFADI 958
Score = 42 (19.8 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 460 VINDSEKDATND-KTPKDSDE-HDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ D D D K +DS H D A RL + E +L G E+LS
Sbjct: 1247 LFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLS 1299
Score = 40 (19.1 bits), Expect = 8.0e-14, Sum P(4) = 8.0e-14
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 PTHFPKSALADPNSTTQLP 69
PT P+ ADPN+ + P
Sbjct: 537 PTPVPRPPDADPNTPSPKP 555
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 140 (54.3 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 51/221 (23%), Positives = 96/221 (43%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKG-IGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
+ +K+++F ++LD V+++I + ++R+DG T R RQ V F + +
Sbjct: 1128 QGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNIDPSLFIFLL 1187
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES- 646
L+ + A V+ + +PS +QA +R +R GQ AV IY T +E
Sbjct: 1188 TTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKI 1247
Query: 647 -HWQNLNKSLRCVSSATNGKY-DALQEIAVEGVSYLEMSD--KTDRGSEDLTLDQVASSD 702
H Q + L TN D Q+ + + ++ K +GSE + ++S+
Sbjct: 1248 YHRQIYKQFL------TNKILKDPRQKRFFKSKHFKDLFTYTKNKKGSETGDIFSGSNSE 1301
Query: 703 QFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTD 743
E M + ++ + + N N+ + L+ + K D
Sbjct: 1302 ILPEHMN--DKNDKNSIKNKNNNNNSILNSSSPLIPKKKKD 1340
Score = 137 (53.3 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 51/213 (23%), Positives = 95/213 (44%)
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLR---RGGRCLIADEMGLGKTLQAIA-I 236
D +DE K+P + + +Q+ VR + L GG ++ DEMGLGKT+Q ++ +
Sbjct: 778 DYEIDENF-KIPFDIYKNLFEYQVTCVRWLYELHCQETGG--IVGDEMGLGKTVQIVSFL 834
Query: 237 AACFIS---AGSILVVCPAILRLSWAEELERWLPFCLPADIHLV-FGHRNNP-------- 284
A+ S G L+V PA L +W +E +W P H G N
Sbjct: 835 ASLHYSRRLGGPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIV 894
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXX 344
+ +++ ++ + ++ +++ W +I+DE H +R P+
Sbjct: 895 KKIAEKGHILLTTFDSIRINQEILLKYHWEYVILDEGHKIR------NPDAEITLSCKQL 948
Query: 345 XXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
V+LSG+P ++ +++ + ++PG LG
Sbjct: 949 QTPHRVILSGSPIQNKLTELWSLFDFVFPGRLG 981
Score = 43 (20.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 463 DSEKDATNDKTPKDSDEHDDS 483
+ EKD N+K D +E++++
Sbjct: 548 NKEKDDDNEKEENDENENEEN 568
Score = 42 (19.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
+D+EK+ ++ +++D+ DD
Sbjct: 553 DDNEKEENDENENEENDDDDD 573
Score = 39 (18.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 462 NDSEKDATNDKTPKDSDEHDD 482
N+ E++ N+ D D+ +D
Sbjct: 555 NEKEENDENENEENDDDDDED 575
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 141 (54.7 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 738 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 797
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 798 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 858 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 913 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 970
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 971 VLRP-FLLRRLKKEVEAQ 987
Score = 136 (52.9 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++K+++F ++ ++++ + +G ++R+DG T DR + +F + +E
Sbjct: 1096 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLS 1155
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1156 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE 1212
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 163 (62.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 64/208 (30%), Positives = 94/208 (45%)
Query: 203 PFQLEGVRF------GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAG---------S 245
P Q EG+ F G+R GRC ++ADEMGLGKTLQ I++ G
Sbjct: 194 PHQREGIIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKK 253
Query: 246 ILVVCPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
L+V P L +W +E ++WL F + D H V +P++ V++ISY
Sbjct: 254 TLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPD-HKVEEFTKSPLY-----SVLIISYE 307
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
ML R + + LLI DE H ++ S + RI+L +GTP +
Sbjct: 308 MLLRSLDQIKNIKFDLLICDEGHRLKNSAI-----KTTTALFSLPCEKRIIL-TGTPVQN 361
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTY 387
+ F I+ + PG+LG + K Y
Sbjct: 362 DLQEFFSLIDFVNPGILGSLSC-YRKIY 388
Score = 106 (42.4 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF--QLSNEV 582
++ P + K+++ +++ + L+ +QE G G R+DG T RQ V F + S++
Sbjct: 552 ELRP-AEKVVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDF 610
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
L+ +++ ++ +P+ +QA R R GQ V+IY T
Sbjct: 611 -IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGT 669
Query: 643 TDESHWQ 649
+E +Q
Sbjct: 670 IEEKIYQ 676
Score = 40 (19.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 887 SRKKEKEYTQGWTINDE 903
S KEKE + W N+E
Sbjct: 496 SSVKEKECSSAWDENEE 512
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 467 DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS--GFREW 508
+ T + P DS E C+LG + + LS ++W
Sbjct: 726 ECTGENHPGDSLEKFPLSRTCQLGPHQQKSNSLKPLSMSQLKQW 769
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 218 (81.8 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 101/438 (23%), Positives = 187/438 (42%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILRLSWAEELERWLPFCLPADI- 274
++AD+MGLGKT+Q +A G IL+V P + +WA E++++ P L +
Sbjct: 684 ILADDMGLGKTIQTLAHLLIEKQQGRLTKPILIVAPTSVIFNWANEIDKFTPQ-LSYQVL 742
Query: 275 -----HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
H FG + +++ SY ++ + ++ + L++DE+H+++ +K
Sbjct: 743 HGNKRHEQFGCLEGVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKT 802
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ L+GTP + + + Q N L PG LG + F K +
Sbjct: 803 K------LYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQR-QFTKLF-- 853
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXS 449
+T G+L R + LN +K ++ RR K + +
Sbjct: 854 -RTPIEKHGEL-------ERKQLLNQRIKPFIL-RRTKDKIATELPPKTEIIQTLRIEGK 904
Query: 450 EIVSAKAAVGVINDSE-KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
+ +V + DS KD DK K S + + A +L ++ + KL G ++
Sbjct: 905 Q-AELYESVRLAMDSRLKDIIADKGLKRS-QIEVLDALLKLRQVCNHPK-LLKLEGAKKV 961
Query: 509 LSIHPVIAESDGAAD-IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
+ + + ID K++IF+ +L +++ + + GIG+V++ G+T R
Sbjct: 962 NQSAKLDYLMETLPEQID---EGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKR 1018
Query: 568 DRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
Q V FQ EV L+ ++A V+ + +P++ QA DRA+R G
Sbjct: 1019 --QEVVDKFQ-RGEVPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIG 1075
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V +Y +++ +E
Sbjct: 1076 QNKPVFVYKLIIENSIEE 1093
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 218 (81.8 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 101/438 (23%), Positives = 187/438 (42%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILRLSWAEELERWLPFCLPADI- 274
++AD+MGLGKT+Q +A G IL+V P + +WA E++++ P L +
Sbjct: 684 ILADDMGLGKTIQTLAHLLIEKQQGRLTKPILIVAPTSVIFNWANEIDKFTPQ-LSYQVL 742
Query: 275 -----HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
H FG + +++ SY ++ + ++ + L++DE+H+++ +K
Sbjct: 743 HGNKRHEQFGCLEGVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKT 802
Query: 330 TSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ L+GTP + + + Q N L PG LG + F K +
Sbjct: 803 K------LYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQR-QFTKLF-- 853
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQXXXXXXXXXXXXXXXS 449
+T G+L R + LN +K ++ RR K + +
Sbjct: 854 -RTPIEKHGEL-------ERKQLLNQRIKPFIL-RRTKDKIATELPPKTEIIQTLRIEGK 904
Query: 450 EIVSAKAAVGVINDSE-KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
+ +V + DS KD DK K S + + A +L ++ + KL G ++
Sbjct: 905 Q-AELYESVRLAMDSRLKDIIADKGLKRS-QIEVLDALLKLRQVCNHPK-LLKLEGAKKV 961
Query: 509 LSIHPVIAESDGAAD-IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
+ + + ID K++IF+ +L +++ + + GIG+V++ G+T R
Sbjct: 962 NQSAKLDYLMETLPEQID---EGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKR 1018
Query: 568 DRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
Q V FQ EV L+ ++A V+ + +P++ QA DRA+R G
Sbjct: 1019 --QEVVDKFQ-RGEVPVFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIG 1075
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V +Y +++ +E
Sbjct: 1076 QNKPVFVYKLIIENSIEE 1093
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 148 (57.2 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+K+++F+ K+LD +Q++ G + R+DG+T +R V F + +V
Sbjct: 525 DKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIKIVKEFNSTQDVNICLVSTM 584
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW-- 648
L+F A VV + +P+ LQA DRA+R GQ V ++ + T +E +
Sbjct: 585 AGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLR 644
Query: 649 QNLNKSLRCVS-SATNGK--YDALQ 670
Q + L CV + N K ++A+Q
Sbjct: 645 QVYKQQLHCVVVGSENAKRYFEAVQ 669
Score = 88 (36.0 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 36/147 (24%), Positives = 69/147 (46%)
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR--NNPVHLT-RFPRVVVISYTMLHR 303
L+V P + +W +EL+ W F + ++ G++ N V + R + + +Y L
Sbjct: 201 LIVAPLSVLYNWRDELDTWGYF----RVTILHGNKKDNELVRVKQRKCEIALTTYETLRL 256
Query: 304 LRKSMIEQDWALLIVDESHHVRCSK-RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+ +W+ +IVDE+H ++ K R +E + RI L +GT +
Sbjct: 257 CLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNV------RIGL-TGTILQNNMK 309
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCD 389
+++ ++ PGLLG ++ F K + D
Sbjct: 310 ELWCVMDWAVPGLLG-SRIHFKKQFSD 335
Score = 79 (32.9 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 193 LPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI 241
+P ++ + +Q EG +F +G C++ D+MGLGKT+Q I+ A +
Sbjct: 115 IPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVL 166
Score = 47 (21.6 bits), Expect = 9.5e-14, Sum P(4) = 9.5e-14
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 722 INTNDEITAKMNDKLLEESKTDHSPTE-----TDDHH 753
+N N++ T ++K+ E++ + S E T DHH
Sbjct: 855 LNPNEKCTFDKSEKIFEQNISSESDDEKKFKNTADHH 891
Score = 37 (18.1 bits), Expect = 9.4e-13, Sum P(4) = 9.4e-13
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKL 736
+AS D+ + + S EA D ++D + + KL
Sbjct: 813 IASDDESSDEQPMCLSVEAKDVGYQKSHDSLGTSQHQKL 851
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 161 (61.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 61/208 (29%), Positives = 95/208 (45%)
Query: 203 PFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIAACFISAG---------S 245
P Q EG+ F G+R GR ++ADEMGLGKTLQ I++ + G
Sbjct: 305 PHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPVLKR 364
Query: 246 ILVVCPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
L+V P L +W +E ++WL F + D H V ++P++ V++ISY
Sbjct: 365 ALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQD-HKVEEFISSPLY-----SVMIISYE 418
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
ML R + ++ LLI DE H ++ S + R ++L+GTP +
Sbjct: 419 MLLRSLDQIQAIEFNLLICDEGHRLKNSSIKT------TTALTNLSCERRIILTGTPIQN 472
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTY 387
+ + I + PG+LG + K Y
Sbjct: 473 DLQEFYALIEFVNPGVLGSLS-TYRKIY 499
Score = 108 (43.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXXXXXX 591
+++ +++ + L+ +QE G + R+DGNT RQ V SF +
Sbjct: 672 VVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKA 731
Query: 592 XXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ A +++ ++ +P+ +QA R R GQ V+IY T +E +Q
Sbjct: 732 GGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQ 789
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 146 (56.5 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 71/290 (24%), Positives = 118/290 (40%)
Query: 162 EKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR---FGLRRGGR 218
EKL D R + L V+E KLP ++ + P+Q EGV F R
Sbjct: 1283 EKLLEGRDRER--KFMSQMLDSRKVEEF--KLPVAIKAELRPYQQEGVNWLAFLNRYNLH 1338
Query: 219 CLIADEMGLGKTLQAIAIAAC--FISAGSI-------------LVVCPAILRLSWAEELE 263
++ D+MGLGKTLQ I I A + A L++CP L W +E++
Sbjct: 1339 GILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKVPSLIICPPSLSGHWQQEVK 1398
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
++ PF R+ +VV SY + + W ++DE H
Sbjct: 1399 QYAPFLNCVAYVGPPAERSKLQGSLADADIVVTSYDICRNDNDVLRPISWNYCVLDEGHL 1458
Query: 324 VRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
++ P+ ++LSGTP + +++ + L PG LG K
Sbjct: 1459 IK------NPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFL 1512
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLL 431
+ + T + + Q+ + + +E L+ KQ + ++RRLK+ +L
Sbjct: 1513 DRFAKPIATSRFSKSSKEQE-AGALAIEALH---KQVLPFLLRRLKEEVL 1558
Score = 142 (55.0 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSF 576
GA V+P ++ ++F ++LD VQ + +K + F+R+DG RQ V+ F
Sbjct: 1677 GAGASYVSP--HRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRF 1734
Query: 577 QLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
L+ + A V+F+E +P +QA DRAHR GQ VN+Y
Sbjct: 1735 NSDPSYDVLLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYR 1794
Query: 637 FCAKDTTDE 645
+ T +E
Sbjct: 1795 LITRGTLEE 1803
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 131 KLRDYNPVLTCLKNSAGIEVE 151
KL + PVL +K +A + E
Sbjct: 557 KLCTFQPVLDAMKENAAADSE 577
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 161 (61.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 61/208 (29%), Positives = 95/208 (45%)
Query: 203 PFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIAACFISAG---------S 245
P Q EG+ F G+R GR ++ADEMGLGKTLQ I++ + G
Sbjct: 305 PHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPVLKR 364
Query: 246 ILVVCPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
L+V P L +W +E ++WL F + D H V ++P++ V++ISY
Sbjct: 365 ALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQD-HKVEEFISSPLY-----SVMIISYE 418
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLS 359
ML R + ++ LLI DE H ++ S + R ++L+GTP +
Sbjct: 419 MLLRSLDQIQAIEFNLLICDEGHRLKNSSIKT------TTALTNLSCERRIILTGTPIQN 472
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTY 387
+ + I + PG+LG + K Y
Sbjct: 473 DLQEFYALIEFVNPGVLGSLS-TYRKIY 499
Score = 107 (42.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXXX 588
S ++++ +++ + L+ + E G + R+DGNT RQ V SF +
Sbjct: 667 SERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLS 726
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
L+ A +++ ++ +P+ +QA R R GQ V+IY T +E +
Sbjct: 727 SKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIY 786
Query: 649 Q 649
Q
Sbjct: 787 Q 787
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 137 (53.3 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 40/182 (21%), Positives = 76/182 (41%)
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
+++L+ +W S + A + + N R+ K I+F+ +LD V+ + G V
Sbjct: 606 VSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTV 665
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQ 618
++ G+ P R + F + + + L+ A V L+ +PS+ Q
Sbjct: 666 KLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQ 725
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVS 678
+ DR HR GQ V I FC +D+ + + K + + N A+ + +
Sbjct: 726 SGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQDEAAISRLTPADLQ 785
Query: 679 YL 680
+L
Sbjct: 786 FL 787
Score = 129 (50.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 58/222 (26%), Positives = 99/222 (44%)
Query: 192 KLPKSLLDVILPFQLEGVRF------GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
K P + +LPFQLEG+ + + GG ++ADEMG+GKT+Q IA+ ++
Sbjct: 175 KQPDGMTIKLLPFQLEGLHWLISQEESIYAGG--VLADEMGMGKTIQTIALLMNDLTKSP 232
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPVHLTRFPRVVVISYTMLH-- 302
LVV P + + W E+E+ L I++ G R + + VV+ +Y +L
Sbjct: 233 SLVVAPTVALMQWKNEIEQHTKGQLK--IYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 303 --------RLRKSMIEQ-------DWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXX 347
R + + +Q D+ +I+DE+H+++ + +
Sbjct: 291 FRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIK------DRQSNTARAVNNLKTQ 344
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ LSGTP +R +++ I L + KY F T CD
Sbjct: 345 KRWCLSGTPLQNRIGEMYSLIRFL--NINPFTKY-FC-TKCD 382
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 461 INDSEK-----DATNDKTPKDSDE 479
+NDS+ DAT K+P D D+
Sbjct: 46 VNDSQDEEYRDDATLVKSPDDDDK 69
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 126 (49.4 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 39/170 (22%), Positives = 73/170 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +LD +++F +G + RIDG+ + RQ A+ + +
Sbjct: 957 HRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLST 1016
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F K + +E
Sbjct: 1017 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITS 1076
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
K + A + +S E+ D G+E+L ++ A
Sbjct: 1077 VAKKKMLLTHLVVRAGLGAKDG---KSMSKTELDDVLRWGTEELFKEEEA 1123
Score = 111 (44.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 203 PFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAIL 254
P+QLEG+ + LR G ++ADEMGLGKT+Q++ + + G L+ P
Sbjct: 618 PYQLEGINW-LRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLST 676
Query: 255 RLSWAEELERWLP 267
++W E E W P
Sbjct: 677 IINWEREAELWCP 689
Score = 87 (35.7 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + + DWA L+VDE+H ++ ++ T R VLL
Sbjct: 737 VLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQST-----FFKNLREYNIQYR-VLL 790
Query: 353 SGTPSLSRPYDIFHQINMLWP 373
+GTP + ++FH +N L P
Sbjct: 791 TGTPLQNNLEELFHLLNFLAP 811
Score = 41 (19.5 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 20/108 (18%), Positives = 43/108 (39%)
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
+D + HW N S V++ + D + E E +++ D + L
Sbjct: 1163 QDGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHY 1222
Query: 700 SSDQFQELMKVPESSEAS---DFRAINTNDEITAKMNDKLLEESKTDH 744
DQ EL K+ + ++ + N + +A+ N + E+ +++
Sbjct: 1223 EQDQETELQKLGKGKRVRRQVNYASENMGQDWSAQNNQQQEEDDGSEY 1270
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 526 VNPRSNKMIIFAHHLKVLDG 545
V R ++M+I H +DG
Sbjct: 697 VGDRESRMVIREHEFSFVDG 716
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 459 GVINDSEKDATNDKTPKDSDE 479
G+I E+ D+TP D D+
Sbjct: 1437 GMIKIKEEPIDIDETPMDVDQ 1457
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 126 (49.4 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 39/170 (22%), Positives = 73/170 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
++++IF+ +LD +++F +G + RIDG+ + RQ A+ + +
Sbjct: 957 HRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLST 1016
Query: 591 XXXXX-LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ ++A V+ + +P +QA RAHR GQ V IY F K + +E
Sbjct: 1017 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITS 1076
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
K + A + +S E+ D G+E+L ++ A
Sbjct: 1077 VAKKKMLLTHLVVRAGLGAKDG---KSMSKTELDDVLRWGTEELFKEEEA 1123
Score = 111 (44.1 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 203 PFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAIL 254
P+QLEG+ + LR G ++ADEMGLGKT+Q++ + + G L+ P
Sbjct: 618 PYQLEGINW-LRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLST 676
Query: 255 RLSWAEELERWLP 267
++W E E W P
Sbjct: 677 IINWEREAELWCP 689
Score = 87 (35.7 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + + DWA L+VDE+H ++ ++ T R VLL
Sbjct: 737 VLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQST-----FFKNLREYNIQYR-VLL 790
Query: 353 SGTPSLSRPYDIFHQINMLWP 373
+GTP + ++FH +N L P
Sbjct: 791 TGTPLQNNLEELFHLLNFLAP 811
Score = 41 (19.5 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 20/108 (18%), Positives = 43/108 (39%)
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
+D + HW N S V++ + D + E E +++ D + L
Sbjct: 1163 QDGEKKEHWTNEYLSSFKVATYNTKEADDADDDEDETEVIKEGTEEQDPNYWEKLLKHHY 1222
Query: 700 SSDQFQELMKVPESSEAS---DFRAINTNDEITAKMNDKLLEESKTDH 744
DQ EL K+ + ++ + N + +A+ N + E+ +++
Sbjct: 1223 EQDQETELQKLGKGKRVRRQVNYASENMGQDWSAQNNQQQEEDDGSEY 1270
Score = 39 (18.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 526 VNPRSNKMIIFAHHLKVLDG 545
V R ++M+I H +DG
Sbjct: 697 VGDRESRMVIREHEFSFVDG 716
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 459 GVINDSEKDATNDKTPKDSDE 479
G+I E+ D+TP D D+
Sbjct: 1437 GMIKIKEEPIDIDETPMDVDQ 1457
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 174 (66.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 71/260 (27%), Positives = 119/260 (45%)
Query: 197 LLDVILPFQLEGVRFGL-----RRG--GRCLIADEMGLGKTLQAIAIAACFISAG----- 244
L +++ P Q EGVRF ++G C++ADEMGLGKTLQ + + + G
Sbjct: 155 LSNILRPHQREGVRFMYECVEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKP 214
Query: 245 ---SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-LTRFPR-------- 292
+VV P+ L +W +E +WL L + + G + N + L +F
Sbjct: 215 TINKAIVVSPSSLVKNWEKEFTKWLQGRLLC-LAMEGGTKENTIRVLEQFSMTSSKLGTP 273
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ISY + + + + ++I DE H ++ S + R VLL
Sbjct: 274 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNS------DNLTYQALMGLKTKRRVLL 327
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGV-RL 410
SGTP + + F +N + P +LG A DF + + + ++G + + K + +
Sbjct: 328 SGTPIQNDLTEYFSLVNFVNPEMLGTAA-DFKRNF-ENSILRGQNADSTEGERKKAIEKT 385
Query: 411 EELNVLLKQTVMIRRLKQHL 430
+EL L+ Q + IRR Q L
Sbjct: 386 QELIGLVDQCI-IRRTNQIL 404
Score = 90 (36.7 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 31/129 (24%), Positives = 53/129 (41%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXX 588
++K+++ +++ + LD ++ ++ GFVR+DG + R V F +E
Sbjct: 519 NDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLS 578
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES-- 646
L+ A + + +P+ QA R R GQ IY A T +E
Sbjct: 579 SKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKIL 638
Query: 647 HWQNLNKSL 655
Q KSL
Sbjct: 639 QRQTHKKSL 647
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 150 (57.9 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 58/224 (25%), Positives = 100/224 (44%)
Query: 180 HLSDEVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIA 235
+L + E I + P SL+ L +Q+ G+R+ + L +ADEMGLGKT+Q I+
Sbjct: 732 YLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVIS 791
Query: 236 IAACFI-----SAGSILVVCPAILRLSWAEELERWLP------FC-LPADIHLVFGHRNN 283
+ C++ G LVV P+ + W E+ W P +C P + +F +
Sbjct: 792 LI-CYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLF--KEQ 848
Query: 284 PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXX 343
VH + Y M R + + W +I+DE H + K S +
Sbjct: 849 IVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRI---KNASC--KLNADLKHY 903
Query: 344 XXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
R+ LL+GTP + +++ +N L P + ++ DF++ +
Sbjct: 904 VSSHRL-LLTGTPLQNNLEELWALLNFLLPNIFNSSE-DFSQWF 945
Score = 136 (52.9 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKXXXXXX 589
++++ F+ ++LD ++++++ KG ++R+DG T DR + + F S
Sbjct: 1090 HRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSI 1149
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
++ +A V+ + +P + LQA+ RAHR GQ V + F ++ +E
Sbjct: 1150 RAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRA 1209
Query: 650 NLNKSLRCVS-SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELM 708
+ L + S T G +D A + YLE + + ED V D +L+
Sbjct: 1210 SAEHKLGVANQSITAGFFDN-NTSAEDRKEYLESLLRESKKEEDAP---VLDDDALNDLI 1265
Query: 709 KVPESSEASDFRAIN 723
ES E F +I+
Sbjct: 1266 ARRES-EIDIFESID 1279
Score = 64 (27.6 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 34/129 (26%), Positives = 58/129 (44%)
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGS---EDLTLD 696
K T D+ + L++ + A++G+ L E +SY+ S+ T S E L D
Sbjct: 2006 KCTADQLLGEKLSQEGE-TTPASDGETCHLAEETASSLSYVR-SEPTASASTTAEPLPTD 2063
Query: 697 QVASSDQFQELMKV--PESSEA---SDFRAINTNDEITAKMNDKLLEESKTDHSPTETDD 751
++ + FQ+ +K + EA S N N +I + N + L+ S+TD P D
Sbjct: 2064 KLEKNISFQDEVKTLNGDKREAILLSSEEQTNVNSKI--ETNSEELQASRTDEVP-HVDG 2120
Query: 752 HHNNVSQYT 760
+V+ T
Sbjct: 2121 KSVDVANQT 2129
Score = 50 (22.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 696 DQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDH-SPTETDDHHN 754
+QV +S + + + V S + F NT+ E + + LL ESK + +P DD N
Sbjct: 1205 EQVRASAEHK--LGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALN 1262
Query: 755 N-VSQYTGRIHLYSCV 769
+ +++ I ++ +
Sbjct: 1263 DLIARRESEIDIFESI 1278
Score = 46 (21.3 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 775 RPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNAL--RPIERTK 825
RP+ E++D+ + + GC E+ ++Q+ + +A+ P E TK
Sbjct: 2439 RPKDGTADTHMEDIDDAKLLVGCSVESEEKEKSLQSHMPSDDAVLHAPFENTK 2491
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 35/147 (23%), Positives = 54/147 (36%)
Query: 680 LEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESS---EASDFRAINTNDEITAKMND-K 735
L M + ++ TL D + K PE S + D + T D ND K
Sbjct: 2282 LLMGCSVESEEKEKTLQSHIPGDD-ADTEKNPEESVSVQGVDRPKVGTTDTQMEDTNDAK 2340
Query: 736 LL--------EESKT--DHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRP 785
LL E+ KT H P + D N + V G + RP+ + +
Sbjct: 2341 LLVGCSVASEEKEKTLQSHIPGDDADTEQNPEESVS-------VQGVN-RPKVGNANTQM 2392
Query: 786 EELDNTEHISGCLKENPGYRHAIQAFI 812
E+ D + + GC E+ +Q+ I
Sbjct: 2393 EDTDEAKVLVGCSVESEEKEKTLQSHI 2419
Score = 40 (19.1 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 772 TDSRPRPLFESFRPEELDNTEHISGCLKENPGYRHAIQAFI 812
+D RP+ + E+ D + + GC E+ +Q+ I
Sbjct: 2261 SDQRPKVGSAYTQMEDTDEAKLLMGCSVESEEKEKTLQSHI 2301
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 137 (53.3 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1031 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1090
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1091 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1150
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1151 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1206
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1207 SVIHYDNEAIA-RLLDRNQDAT 1227
Score = 109 (43.4 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 695 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 754
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 755 NWEREFQMWAP 765
Score = 78 (32.5 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 813 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 866
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 867 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 911
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 912 LHDLLGPH-MLRRLK 925
Score = 44 (20.5 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 640 KDTTDESHWQNLNKSLRC--VSSATNGKYDALQEIAVEGVSYLEMSD 684
+D TD++ QN+N+ L V+ + D ++EI E + E D
Sbjct: 1224 QDATDDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVD 1270
Score = 43 (20.2 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 28/120 (23%), Positives = 45/120 (37%)
Query: 692 DLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDK------LLEESKTDHS 745
D + D SS P + EAS + T+ T ++K LLE+ T++
Sbjct: 1476 DPSADSKRSSRASSPTKTSPTTPEASTTNSPCTSKPATPAPSEKGDGVRTLLEKDDTEN- 1534
Query: 746 PTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYR 805
P E + + V + + S P R E D+ + G ++ PGYR
Sbjct: 1535 PEEKPEKSSKVGEKM-ETEIDSPSPAPSLGERLEHRKILLE--DDAPGVPGEIEPEPGYR 1591
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 137 (53.3 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 50/218 (22%), Positives = 101/218 (46%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ + G L++ P +W E E+W P
Sbjct: 795 ILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYK 854
Query: 276 -LVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
G R N + T+F V++ +Y + + + + + W +I+DE H ++
Sbjct: 855 GSPQGRRLLQNQMRATKF-NVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMK----NHH 909
Query: 333 PEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ R+ LL+GTP ++ +++ +N L P + K+ F + +
Sbjct: 910 CKLTQVLNTHYIAPYRL-LLTGTPLQNKLPELWALLNFLLPSIF-KSCSTFEQWFNAPFA 967
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
G + +L ++ + + + L+ +L+ ++RRLK+ +
Sbjct: 968 TTGEKVELNEEETILI-IRRLHKVLRP-FLLRRLKKEV 1003
Score = 135 (52.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 46/228 (20%), Positives = 93/228 (40%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXXX 588
++++++F + + +++++ + G++R+DG T DR + F ++V
Sbjct: 1114 NHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLS 1173
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
L+ +A VV + +P LQA+DRAHR GQ + V + ++ +E
Sbjct: 1174 TRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERIL 1233
Query: 649 QNLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
L G +D + E +L+ D E+ + D+ +
Sbjct: 1234 AAARYKLNMDEKVIQAGMFDQ-KSTGSERQQFLQTILHQDDNEEEE--ENEVPDDEMINM 1290
Query: 708 MKVPESSEASDFRAINTN----DEITAKMNDKLLEESKTDHSPTETDD 751
M E F+ ++ DE ++L++ES+ T+ DD
Sbjct: 1291 MIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDD 1338
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 142 (55.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 715 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 774
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 775 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 834
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 889
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 890 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 947
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 948 VLRP-FLLRRLKKEV 961
Score = 129 (50.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1252
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1253 REEEFDLFMRMDMDRRREDAR 1273
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 142 (55.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 690 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 749
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 750 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 809
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 810 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 864
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 865 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 922
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 923 VLRP-FLLRRLKKEV 936
Score = 129 (50.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1048 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1107
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1108 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1167
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1168 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1227
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1228 REEEFDLFMRMDMDRRREDAR 1248
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQ-ELGIAKLSGFREWL- 509
SA+ + +SE ++ ++ +D +E + ++ K++ + E G K G +
Sbjct: 1465 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNR 1524
Query: 510 -SIHPVIAESDGAADIDVNPRS 530
PV+++ D + D N +S
Sbjct: 1525 GKAKPVVSDFDSDEEQDENEQS 1546
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 142 (55.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 692 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 751
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 752 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 811
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 866
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 867 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 924
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 925 VLRP-FLLRRLKKEV 938
Score = 129 (50.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1229
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1230 REEEFDLFMRMDMDRRREDAR 1250
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQ-ELGIAKLSGFREWL- 509
SA+ + +SE ++ ++ +D +E + ++ K++ + E G K G +
Sbjct: 1467 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNR 1526
Query: 510 -SIHPVIAESDGAADIDVNPRS 530
PV+++ D + D N +S
Sbjct: 1527 GKAKPVVSDFDSDEEQDENEQS 1548
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 142 (55.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 692 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 751
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 752 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 811
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 866
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 867 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 924
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 925 VLRP-FLLRRLKKEV 938
Score = 129 (50.5 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1229
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1230 REEEFDLFMRMDMDRRREDAR 1250
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQ-ELGIAKLSGFREWL- 509
SA+ + +SE ++ ++ +D +E + ++ K++ + E G K G +
Sbjct: 1467 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNR 1526
Query: 510 -SIHPVIAESDGAADIDVNPRS 530
PV+++ D + D N +S
Sbjct: 1527 GKAKPVVSDFDSDEEQDENEQS 1548
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 138 (53.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 49/207 (23%), Positives = 88/207 (42%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+Q+EG+ + + ++ADEMGLGKT+Q I+ + + G LVV P
Sbjct: 758 YQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQDIKGPFLVVVPLSTIE 817
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP------------RVVVISYTMLHRL 304
+W E +W P + ++ G + + L F V++ +Y + +
Sbjct: 818 NWQREFAKWAP-AMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFNVLLTTYDFILKD 876
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDI 364
+ ++ W L VDE+H ++ S E +L++GTP + ++
Sbjct: 877 KNTLGTIKWEFLAVDEAHRLKNS------ESVLHEVLKLYNTTNRLLVTGTPLQNSLKEL 930
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVK 391
++ +N L P K DF Y D+K
Sbjct: 931 WNLLNFLMPNKFTSLK-DFQDQYSDLK 956
Score = 135 (52.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 51/242 (21%), Positives = 103/242 (42%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
I + ++++IF+ +++LD + +++ + F R+DG+ R A+ F +
Sbjct: 1075 IRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFNAVDSPD 1134
Query: 584 X-XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ S+A V+ + +P LQAE RAHR GQ + VNIY +K +
Sbjct: 1135 FCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSS 1194
Query: 643 TDESHWQNLNKSL-------RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTL 695
+E + + + + + + K + V LE K G+E+L
Sbjct: 1195 VEEDILERAKQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKF--GAEELFK 1252
Query: 696 DQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNN 755
+ ++ +E M + E ++ R +D TA ++LL + + T + + N
Sbjct: 1253 ETGEEANPIEE-MDIDEILSRAETR--EASDSTTA--GEELLNSFRVANFSTTSKEEQQN 1307
Query: 756 VS 757
+
Sbjct: 1308 AT 1309
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/194 (20%), Positives = 71/194 (36%)
Query: 644 DESHWQNLNKSLRCVSSATNGKY------DALQEIAVEGVSYLEMSDKTDRGSEDLTLDQ 697
D ++ N N S TN KY D + Y+E +K ++ T +
Sbjct: 1612 DNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDNDNDEDYMEEEEKKEKTKNTRTKKR 1671
Query: 698 VASSDQFQELMK----------VPESS--EASDFRAINTNDEITAKMNDKLLEESKTDHS 745
+ S + +E++ VP + E S ++ T T + K SK HS
Sbjct: 1672 IKSEELQKEILSPKKTSFGRLSVPPNKMGERSPSKSTTTTTTTTTS-SSKSSRNSK-HHS 1729
Query: 746 PTETDDHHNNVSQY-TGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGY 804
+ DD+ + S GR S + S ++ +E D+ + L++ Y
Sbjct: 1730 DDDDDDYRDKDSNSGRGRGRGRSSNSSSSSSSSSRNKNHESDEEDDKYYDKNLLRKCQQY 1789
Query: 805 RHAIQAFINEWNAL 818
I+ + + +L
Sbjct: 1790 LSPIKELLENFRSL 1803
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 137 (53.3 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1071 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFLL 1130
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1131 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1190
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1191 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1246
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1247 SVIHYDNEAIA-RLLDRNQDAT 1267
Score = 109 (43.4 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 735 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 794
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 795 NWEREFQMWAP 805
Score = 78 (32.5 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 853 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 906
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 907 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 951
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 952 LHDLLGPH-MLRRLK 965
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 137 (53.3 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1073 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1132
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1133 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1192
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1193 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1248
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1249 SVIHYDNEAIA-RLLDRNQDAT 1269
Score = 109 (43.4 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 737 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 796
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 797 NWEREFQMWAP 807
Score = 78 (32.5 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 855 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 908
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 909 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 953
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 954 LHDLLGPH-MLRRLK 967
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 137 (53.3 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1075 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1134
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1135 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1194
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1195 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1250
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1251 SVIHYDNEAIA-RLLDRNQDAT 1271
Score = 109 (43.4 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 739 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 798
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 799 NWEREFQMWAP 809
Score = 78 (32.5 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 857 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 911 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 955
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 956 LHDLLGPH-MLRRLK 969
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 137 (53.3 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1075 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1134
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1135 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1194
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1195 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1250
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1251 SVIHYDNEAIA-RLLDRNQDAT 1271
Score = 109 (43.4 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 739 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 798
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 799 NWEREFQMWAP 809
Score = 78 (32.5 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 857 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 911 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 955
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 956 LHDLLGPH-MLRRLK 969
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 142 (55.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 692 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 751
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 752 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 811
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 866
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 867 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 924
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 925 VLRP-FLLRRLKKEV 938
Score = 129 (50.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1050 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1109
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1110 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1169
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1170 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1229
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1230 REEEFDLFMRMDMDRRREDAR 1250
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/82 (20%), Positives = 38/82 (46%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQ-ELGIAKLSGFREWL- 509
SA+ + +SE ++ ++ +D +E + ++ K++ + E G K G +
Sbjct: 1485 SARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNR 1544
Query: 510 -SIHPVIAESDGAADIDVNPRS 530
PV+++ D + D N +S
Sbjct: 1545 GKAKPVVSDFDSDEEQDENEQS 1566
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 142 (55.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 713 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 772
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 773 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 832
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 833 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 887
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 888 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 945
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 946 VLRP-FLLRRLKKEV 959
Score = 129 (50.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1071 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1130
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1131 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1190
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1191 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1250
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1251 REEEFDLFMRMDMDRRREDAR 1271
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
SA+ + +SE+++ N++ +D +E +S A
Sbjct: 1488 SARQKIAKEEESEEES-NEEEEEDDEEESESEA 1519
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 137 (53.3 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1126 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1185
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1186 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1245
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1246 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1301
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1302 SVIHYDNEAIA-RLLDRNQDAT 1322
Score = 109 (43.4 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 790 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 849
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 850 NWEREFQMWAP 860
Score = 78 (32.5 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 908 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 961
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 962 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 1006
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 1007 LHDLLGPH-MLRRLK 1020
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 142 (55.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 708 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 767
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 768 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 827
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 828 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 882
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 883 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 940
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 941 VLRP-FLLRRLKKEV 954
Score = 129 (50.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1066 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1125
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1126 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1185
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1186 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1245
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1246 REEEFDLFMRMDMDRRREDAR 1266
Score = 39 (18.8 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
SA+ + +SE D +N++ ++ +E +S A
Sbjct: 1501 SARQKIAKEEESE-DESNEEEEEEDEEESESEA 1532
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 142 (55.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 715 ISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 774
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 775 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 834
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 889
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 890 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 947
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 948 VLRP-FLLRRLKKEV 961
Score = 129 (50.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 39/201 (19%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1073 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1132
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A VV + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1133 TRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1192
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1193 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1252
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1253 REEEFDLFMRMDMDRRREDAR 1273
Score = 39 (18.8 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 17/84 (20%), Positives = 38/84 (45%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQE-----LGIAKLSGFR 506
SA+ + +SE+++ ++ +D +E + ++ K++ +E G K R
Sbjct: 1508 SARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNR 1567
Query: 507 EWLSIHPVIAESDGAADIDVNPRS 530
PV+++ D + D N +S
Sbjct: 1568 G--KAKPVVSDFDSDEEQDENEQS 1589
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 141 (54.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 58/258 (22%), Positives = 119/258 (46%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
V E + K +++ +L +Q++G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 730 VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLM 789
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +WA E ++W P + R V R + V++
Sbjct: 790 EHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLL 849
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 850 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRLLLTGT 904
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 905 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGEKVDLNEEETILI-IRRLHK 962
Query: 416 LLKQTVMIRRLKQHLLVQ 433
+L+ ++RRLK+ + Q
Sbjct: 963 VLRP-FLLRRLKKEVEAQ 979
Score = 130 (50.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 38/190 (20%), Positives = 87/190 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXX 589
++K+++F ++ ++++ + +G ++R+DG T DR + +F
Sbjct: 1088 NHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLL-TFNEPGSEYFILLST 1146
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE---- 645
L+ SA V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1147 RAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA 1206
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS-- 700
+ LN + + + + + E ++ + + E ++ D +D T++Q+ +
Sbjct: 1207 AAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARH 1266
Query: 701 SDQFQELMKV 710
++F M++
Sbjct: 1267 EEEFDLFMRM 1276
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 137 (53.3 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1126 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1185
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1186 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1245
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1246 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1301
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1302 SVIHYDNEAIA-RLLDRNQDAT 1322
Score = 109 (43.4 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 790 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 849
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 850 NWEREFQMWAP 860
Score = 78 (32.5 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 908 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 961
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 962 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 1006
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 1007 LHDLLGPH-MLRRLK 1020
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 137 (53.3 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX-XXX 587
+ ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1134 QGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLL 1193
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ ++A V+ + +P +QA RAHR GQ + V IY F + + +E
Sbjct: 1194 STRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERI 1253
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
Q + + L A +S E+ D G+E+L D+ ++ ++
Sbjct: 1254 TQVAKRKMMLTHLVVR---PGLGSKA-GSMSKQELDDILKFGTEELFKDENEGENKEEDS 1309
Query: 708 MKVPESSEASDFRAINTNDEIT 729
+ +EA R ++ N + T
Sbjct: 1310 SVIHYDNEAIA-RLLDRNQDAT 1330
Score = 109 (43.4 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 798 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTII 857
Query: 257 SWAEELERWLP 267
+W E + W P
Sbjct: 858 NWEREFQMWAP 868
Score = 78 (32.5 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
V++ SY ++ + ++ WA L+VDE+H R + +LL
Sbjct: 916 VLLTSYELITIDQAALGSIRWACLVVDEAH------RLKNNQSKFFRVLNGYKIDHKLLL 969
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++FH +N L P +++ ++G+ + F D SK ++++
Sbjct: 970 TGTPLQNNLEELFHLLNFLTP-----ERFN---------NLEGFLEE-FADISKEDQIKK 1014
Query: 413 LNVLLKQTVMIRRLK 427
L+ LL M+RRLK
Sbjct: 1015 LHDLLGPH-MLRRLK 1028
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 174 (66.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 77/265 (29%), Positives = 122/265 (46%)
Query: 185 VVDEMIGKL--PKSLLDVILPFQ-LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA---- 237
V D ++GK+ P V + + G+ G C++ADEMGLGKTLQ I++
Sbjct: 193 VADPVVGKILRPHQRDGVKFMWDCVTGINIPEFHG--CIMADEMGLGKTLQCISLLWTLL 250
Query: 238 -----ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-LTRFP 291
AC + SI +VCP+ L +W +E+++WL L A + + G R + L F
Sbjct: 251 RQSPDACPTVSKSI-IVCPSSLVKNWDKEIKKWLGTRLNA-MPVDSGKREQIIACLNSFM 308
Query: 292 R---------VVVISYTMLHRLRKSMIEQ-DWALLIVDESHHVRCSKRTSEPEEXXXXXX 341
V++ISY RL +++ D ++I DE H ++ S E
Sbjct: 309 ADSKMRCAIPVLIISYETF-RLYANILHSGDVGIVICDEGHRLKNS------ENLTYQAL 361
Query: 342 XXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
R VL+SGTP + + F +N + PGLLG A +F K + + ++G
Sbjct: 362 SGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTAS-EFRKKF-ENAILKGRDADAS 419
Query: 402 -QDFSKGVRLEELNVLLKQTVMIRR 425
+D KG + + L + +IRR
Sbjct: 420 SEDQKKGEEKTKEMISLVEKCIIRR 444
Score = 122 (48.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 40/112 (35%), Positives = 60/112 (53%)
Query: 178 PEHLSD-----EVVDEMIGKLPKSLLDVIL-PFQLEGVRF------GLR--RGGRCLIAD 223
PEHLS+ E D + + ++ IL P Q +GV+F G+ C++AD
Sbjct: 173 PEHLSEHAQLKEDKDRKVHVVADPVVGKILRPHQRDGVKFMWDCVTGINIPEFHGCIMAD 232
Query: 224 EMGLGKTLQAIAIA---------ACFISAGSILVVCPAILRLSWAEELERWL 266
EMGLGKTLQ I++ AC + SI +VCP+ L +W +E+++WL
Sbjct: 233 EMGLGKTLQCISLLWTLLRQSPDACPTVSKSI-IVCPSSLVKNWDKEIKKWL 283
Score = 89 (36.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 32/135 (23%), Positives = 57/135 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXXX 589
+K ++ +++ + +D E +G FVR+DG+ + R V +F ++ +
Sbjct: 565 DKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSS 624
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ A +V + +P+ QA R R GQ IY A + +E +Q
Sbjct: 625 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQ 684
Query: 650 NLN--KSLR-CVSSA 661
K+L CV A
Sbjct: 685 RQTHKKALSSCVVDA 699
Score = 43 (20.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 652 NKSLRCVSSATNGK-YDALQEIAVEGVSY-LEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
NK L + N K +D ++ + Y L ++ KT L + + DQF EL K
Sbjct: 526 NKCLSIFPESFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCK 585
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTET 749
+ DF + + ++ K K+++ T + P T
Sbjct: 586 L----RGYDF--VRLDGSMSIKQRSKIVD---TFNDPAST 616
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
S V + + ++ D P +++E+DD
Sbjct: 789 SHNVEVKKVQEKVEEVDEDYVPSEAEENDD 818
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 142 (55.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 34/138 (24%), Positives = 63/138 (45%)
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKX 584
D+ + +++++F+ +LD ++ F+ +VR+DG T +R + F ++
Sbjct: 842 DIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDIFI 901
Query: 585 XXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ +SA V+ ++ +P QAEDR HR GQT V + K T +
Sbjct: 902 FLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIE 961
Query: 645 ESHWQNLNKSLRCVSSAT 662
ES + + LR T
Sbjct: 962 ESMLKISQQKLRLEQDMT 979
Score = 124 (48.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 61/251 (24%), Positives = 111/251 (44%)
Query: 200 VILPFQLEGVRF-GL--RRGGRCLIADEMGLGKTLQAIA-IAACFIS--AGSILVVCPAI 253
V+ P+Q G+ + L + ++ADEMGLGKT+QAIA +A +++ +G LVV PA
Sbjct: 473 VLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSGPHLVVVPAS 532
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-VVISYTMLHRLRKSMIE-- 310
+W E +W P +I L +G + HL R+ + V+ + ++ I
Sbjct: 533 TMDNWIREFNQWCP---SMNILLYYGSQEERKHL-RYDILNKVVEFNVIVTTYNCAISSA 588
Query: 311 QDWALL--------IVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPY 362
+D +L + DE H + K S R+ LL+GTP +
Sbjct: 589 EDRSLFRRLKLNFAVFDEGHML---KNMSAIR--YQHLMTLNARSRL-LLTGTPVQNNLL 642
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ +N + P + + + + + K + +F+ R+ ++K ++
Sbjct: 643 ELMSLLNFVMPHMFSSSTSEIKRLFSS-KAKSTDEQTIFEK----ERIAHAKQIMKPFIL 697
Query: 423 IRRLKQHLLVQ 433
RR+K +L Q
Sbjct: 698 -RRVKSEVLKQ 707
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 142 (55.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 57/255 (22%), Positives = 117/255 (45%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241
+ E + K L++ L +QL+G+ + L ++ADEMGLGKT+Q IA+ +
Sbjct: 682 ITERVEKQSSLLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLM 741
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
G L++ P +W E ++W P + R + V R + V++
Sbjct: 742 EHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLL 801
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + + + + W +IVDE H ++ + + R +LL+GT
Sbjct: 802 TTYEYIIKDKHILAKIRWKYMIVDEGHRMK-----NHHCKLTQVLNTHYVAPRRILLTGT 856
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P ++ +++ +N L P + K+ F + + + G + L ++ + + + L+
Sbjct: 857 PLQNKLPELWALLNFLLPTIF-KSCSTFEQWFNAPFAMTGERVDLNEEETILI-IRRLHK 914
Query: 416 LLKQTVMIRRLKQHL 430
+L+ ++RRLK+ +
Sbjct: 915 VLRP-FLLRRLKKEV 928
Score = 128 (50.1 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 38/201 (18%), Positives = 92/201 (45%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXX 588
++++++F ++ ++++ + + ++R+DG T DR + + F + ++
Sbjct: 1040 NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLS 1099
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE--- 645
L+ +A V+ + +P LQA+DRAHR GQ + V + C ++ +E
Sbjct: 1100 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKIL 1159
Query: 646 -SHWQNLNKSLRCVSSATNGKYDALQE--IAVEGV-SYLEMSDKTDRGSEDLTLDQVAS- 700
+ LN + + + + + E ++ + + E +++ D +D TL+Q+ +
Sbjct: 1160 AAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIAR 1219
Query: 701 -SDQFQELMKVPESSEASDFR 720
++F M++ D R
Sbjct: 1220 REEEFDLFMRMDMDRRREDAR 1240
Score = 51 (23.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG-KISYQ-ELGIAKLSGFREW-- 508
SA+ + +SE ++ +D+ D +E + ++ K++ + E K G +
Sbjct: 1457 SARQKIAKEEESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSREKGKGKKRQSR 1516
Query: 509 LSIHPVIAESDGAADIDVNPRS 530
PV+++ D D D N +S
Sbjct: 1517 AKAKPVVSDDDSDEDQDENDQS 1538
Score = 38 (18.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 469 TNDKTPKDSDEHDDSGA 485
++D + +D DE+D S A
Sbjct: 1524 SDDDSDEDQDENDQSEA 1540
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 173 (66.0 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 61/238 (25%), Positives = 102/238 (42%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD +E K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 484 SDTEFEEGF-KVPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 540
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
A + G ++VCPA + W +E W P A +H + N
Sbjct: 541 LAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTN 600
Query: 283 NPVHLTR----FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXX 338
V L R +++ SY+ + ++ ++ DW +I+DE H +R P
Sbjct: 601 KKVKLIREIASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIR------NPNAAVT 654
Query: 339 XXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
++LSG+P + +++ + ++PG LG F + + T+ GY
Sbjct: 655 LACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPV-FMEQFSVPITMGGY 711
Score = 107 (42.7 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 24/117 (20%), Positives = 51/117 (43%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXX 588
+ ++++ F ++L ++ F+ ++ ++R+DG T RQ + + +
Sbjct: 850 QGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNEDKSIFIFLLT 909
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + A V+ + +PS QA +RA R GQ V +Y T +E
Sbjct: 910 TRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 966
Score = 37 (18.1 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 152 GIPWVTLNV-VEKLS--HSIDTGRWNPCRPEHLSDEVVDE 188
GIP N+ KL D+G + EHL E V+E
Sbjct: 349 GIPKEKKNLETTKLKPGQKDDSGESDYVPDEHLEPEAVEE 388
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 150 (57.9 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 780 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 839
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 840 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 899
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 900 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 951
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 952 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDE 1011
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1012 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1068
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1069 GRRSRSRRYSGSDSDSISERKRPKKRGRPRTIP 1101
Score = 120 (47.3 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 466 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 525
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H P+ +++ +Y +L + +
Sbjct: 526 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF 584
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 585 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 638
Query: 365 FHQI 368
H I
Sbjct: 639 LHFI 642
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 150 (57.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 792 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 851
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR G S VNIY K +
Sbjct: 852 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 911
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 912 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 963
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 964 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDE 1023
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1024 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1080
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1081 GRRSRNRRYSGSDSDSISERKRPKKRGRPRTIP 1113
Score = 120 (47.3 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 478 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 537
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H P+ +++ +Y +L + +
Sbjct: 538 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF 596
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 597 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 650
Query: 365 FHQI 368
H I
Sbjct: 651 LHFI 654
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 150 (57.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 792 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 851
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR G S VNIY K +
Sbjct: 852 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 911
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 912 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 963
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 964 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDE 1023
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1024 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1080
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1081 GRRSRNRRYSGSDSDSISERKRPKKRGRPRTIP 1113
Score = 120 (47.3 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 478 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 537
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H P+ +++ +Y +L + +
Sbjct: 538 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF 596
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 597 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 650
Query: 365 FHQI 368
H I
Sbjct: 651 LHFI 654
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 165 (63.1 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 38/140 (27%), Positives = 68/140 (48%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXXXXX 590
+++++F+ +VLD +Q + + F+R DG+T RQ + F +
Sbjct: 778 DRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTK 837
Query: 591 XXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
++ + A V+ ++ +P LQAEDRAHR GQ V +Y F KDT +E H Q
Sbjct: 838 AGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEE-HIQR 896
Query: 651 LNKSLRCVSSATNGKYDALQ 670
L + + + +G + ++
Sbjct: 897 LANAKIALDATLSGNAETVE 916
Score = 98 (39.6 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 56/229 (24%), Positives = 92/229 (40%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
++ADEMGLGKT Q IA + + G LV+ PA +W E + FC I L
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAK---FCPKLKIEL 465
Query: 277 VFGHRNNPVHLTRFPRVVVISYTML---HRL-------RKSMIEQDWALLIVDESHHVRC 326
+G + + SY ++ +RL R + Q + + + DE H+++
Sbjct: 466 YYGSQVEREEIRERINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLK- 524
Query: 327 SKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
R SE VLL+GTP + ++ + + P + +D+
Sbjct: 525 -NRASERYRHLMSIPADFR----VLLTGTPLQNNLKELISLLAFILPHV-----FDYGLK 574
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM----IRRLKQHLL 431
DV + DF + + L E V + +M +RR K +L
Sbjct: 575 SLDVIFTMKKSPE--SDFERAL-LSEQRVSRAKMMMAPFVLRRKKSQVL 620
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 150 (57.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 793 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 852
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR G S VNIY K +
Sbjct: 853 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGS 912
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 913 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 964
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 965 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDE 1024
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1025 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1081
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1082 GRRSRNRRYSGSDSDSISERKRPKKRGRPRTIP 1114
Score = 120 (47.3 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 479 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 538
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H P+ +++ +Y +L + +
Sbjct: 539 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF 597
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 598 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 651
Query: 365 FHQI 368
H I
Sbjct: 652 LHFI 655
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 150 (57.9 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 810 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 869
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 870 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 929
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 930 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 981
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 982 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKVANFSNMDE 1041
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1042 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1098
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1099 GRRSRSRRYSGSDSDSISERKRPKKRGRPRTIP 1131
Score = 120 (47.3 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 496 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 555
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H P+ +++ +Y +L + +
Sbjct: 556 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF 614
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 615 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 668
Query: 365 FHQI 368
H I
Sbjct: 669 LHFI 672
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 462 NDSEKDATNDKTPKDSDEHD 481
+DSE + DK+ D E D
Sbjct: 160 SDSESEEERDKSSCDETESD 179
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 149 (57.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 74/333 (22%), Positives = 139/333 (41%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEV 582
I + R N+++IF+ +++LD + E++ + F R+DG+ R+ A+ F +E
Sbjct: 798 IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857
Query: 583 KXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
++ +SA VV + +P LQA+ RAHR GQ VNIY K +
Sbjct: 858 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
+E + K + + +Q + G + L + S +++++
Sbjct: 918 VEEDILERAKKKMVL-------DHLVIQRMDTTGKTVLH-TGSAPSSSTPFNKEELSAIL 969
Query: 703 QF--QELMKVPESSEAS----DFRAI------NTNDEITAKMNDKLLEESKTDHSPTETD 750
+F +EL K PE E D I + N+ + D+LL + K + +
Sbjct: 970 KFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDE 1029
Query: 751 DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT---EHISGCLKE-----NP 802
D + + + +P D R R L E R +EL+ + C K+ +
Sbjct: 1030 DDIELEPERNSK-NWEEIIP-EDQRRR-LEEEERQKELEEIYMLPRMRNCAKQISFNGSE 1086
Query: 803 GYRHAIQAFI-NEWNALRPIERTKLLGKPLQLP 834
G R + + ++ +++ +R K G+P +P
Sbjct: 1087 GRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIP 1119
Score = 120 (47.3 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 46/184 (25%), Positives = 81/184 (44%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL G+ + +G C++ADEMGLGKT+Q I+ G L+V P
Sbjct: 484 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 543
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV-------HLTRFPR--VVVISYTMLHRLRKS 307
SW E++ W + A ++L + N + H T+ + +++ +Y +L + +
Sbjct: 544 SWQREIQTWASQ-MNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAF 602
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPYDI 364
+ +WA + VDE+H R + +L++GTP SL + +
Sbjct: 603 LGGLNWAFIGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 365 FHQI 368
H I
Sbjct: 657 LHFI 660
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLG 490
S++++ + + + S DDSG+ G
Sbjct: 5 SDEESVRNSSGESSQSDDDSGSASGSG 31
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 167 (63.8 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 56/220 (25%), Positives = 101/220 (45%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKXXXX 587
R N+++IF+ +++LD + E+++ K F R+DG+ R+ A+ F +E
Sbjct: 808 RGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLL 867
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
++ +SA VV + +P LQA+ RAHR GQ VNIY K T +E
Sbjct: 868 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEI 927
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLT-LDQVASSDQFQE 706
+ K + + + D ++ S S+ ++ E+LT + + + D F+E
Sbjct: 928 IERAKKKM-VLDHLVIQRMDTTGRTVLDNNSGRSNSNPFNK--EELTAILKFGAEDLFKE 984
Query: 707 LM---KVPESSEASDF-RAINTND-EITAKMNDKLLEESK 741
L P+ + + R T + E++ D+LL + K
Sbjct: 985 LEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFK 1024
Score = 111 (44.1 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 49/186 (26%), Positives = 76/186 (40%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ + + ++ADEMGLGKT+Q I+ + G LVV P
Sbjct: 489 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLSTLT 548
Query: 257 SWAEELERWLPFCLPADIHLVFGH---RN-----NPVHLT--RFP-RVVVISYTMLHRLR 305
SW E E W P ++ + G RN +H R ++ +Y +L + +
Sbjct: 549 SWQREFEVWAP---EINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNALITTYEILLKDK 605
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTP---SLSRPY 362
+ WA L VDE+H R + +L++GTP SL +
Sbjct: 606 AVLGSISWAFLGVDEAH------RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 659
Query: 363 DIFHQI 368
+ H I
Sbjct: 660 SLLHFI 665
Score = 42 (19.8 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 463 DSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522
+++ D + T + +DEH+D+ + K+ LG +G +++ A + +A
Sbjct: 242 ETDSDDLIEMTGEGADEHEDNSET--IEKVLDIRLGKKGATGAST--TVYATEANGNPSA 297
Query: 523 DID 525
D D
Sbjct: 298 DFD 300
Score = 39 (18.8 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 723 NTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
N D K+ + K + +P D+H N +S
Sbjct: 1334 NMKDGEEGKLKKRKPRVKKENKAPKVKDEHGNELS 1368
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 260 EELERWLPFCLPADI 274
EE+++WL P D+
Sbjct: 349 EEIKQWLAKVSPEDV 363
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 210 (79.0 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 83/434 (19%), Positives = 170/434 (39%)
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV--FGHRNNPV- 285
K L+ + A F G ++VCP + W +E W P A +H F H+ +
Sbjct: 543 KRLRVRGVYALFEGLGPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGSFTHKKEKLV 602
Query: 286 -HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXX 344
+ R +++ SY+ + ++ + DW +I+DE H +R P
Sbjct: 603 RDIARCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR------NPNAAVTLACKQF 656
Query: 345 XXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404
++LSG+P + +++ + ++PG LG F + + T+ GY
Sbjct: 657 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGGYSNASPVQV 715
Query: 405 SKGVRLEELNVLLKQTV---MIRRLKQHLLVQXXXXXXXXXXXXXXXSE--------IVS 453
+ +L+ T+ ++RR+K + + ++ +
Sbjct: 716 KTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFID 772
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKLSGFREWLSI 511
+K ++N + + + H D SG L I +ELG + ++ S
Sbjct: 773 SKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGEDQFGYWKR--SG 830
Query: 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
++ ES I + + ++++F+ ++LD ++ F+ + ++++DG T RQ
Sbjct: 831 KMIVVES--LLKI-WHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQP 887
Query: 572 AVHSFQLSNEVKXXXXXXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
+ + + ++ + A V+ + +PS QA +RA R GQ
Sbjct: 888 LITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQ 947
Query: 632 VNIYIFCAKDTTDE 645
V +Y T +E
Sbjct: 948 VTVYRLLTAGTIEE 961
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 132 (51.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXX 588
++K++IF+ K+LD + + SEKG RIDG+ +R+ + F +
Sbjct: 540 NHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLS 599
Query: 589 XXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
++ ++A + + +P + LQA DR HR GQT V++Y
Sbjct: 600 TRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVY 646
Score = 127 (49.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 59/268 (22%), Positives = 121/268 (45%)
Query: 182 SDEVVDEMIGKLPKSLLDVIL-----PFQLEGVRFGL---RRGGRCLIADEMGLGKTLQA 233
SD +E + KL L ++ +QL+GV++ + + G ++AD+MGLGKT+Q
Sbjct: 178 SDLTEEETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQT 237
Query: 234 IAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR- 289
I + G LV+ P +W E+ R+ P + A I+ G +N L R
Sbjct: 238 IGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTP-SINAIIY--HGDKNQRDELRRK 294
Query: 290 -FPR-------VVVISYTM-LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXX 340
P+ +V+ SY + ++ ++ + W +++DE H ++ K E
Sbjct: 295 HMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRE------ 348
Query: 341 XXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+LL+GTP + +++ +N + P + +D +++ D +
Sbjct: 349 LKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIF--TSHDEFESWFDFSEKNKNEATK 406
Query: 401 FQDFSKGVRL-EELNVLLKQTVMIRRLK 427
++ + ++ +L+ +L+ ++ RR+K
Sbjct: 407 EEEEKRRAQVVSKLHGILRPFIL-RRMK 433
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 141 (54.7 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 46/171 (26%), Positives = 79/171 (46%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q IA + ++ LVV P +W E RW P +H
Sbjct: 646 ILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLSTISNWVSEFARWSP-----KLH 700
Query: 276 LVF--GHRNNPVHLTR-FPR----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
++ G ++ R PR VV+ S+ + + RK++ W +I+DE H ++
Sbjct: 701 VIVYKGKQDERRETARTIPRNAFCVVITSFEYIIKDRKTLGRVHWIYIIIDEGHRIK--- 757
Query: 329 RTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA 379
++ + R+ LL+GTP + +++ +N L P + A
Sbjct: 758 --NKNSKLSVQLRQYHSRNRL-LLTGTPLQNDLGELWALLNFLLPTIFNSA 805
Score = 134 (52.2 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 29/116 (25%), Positives = 62/116 (53%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKXXXXXX 589
++++IF +V++ ++E+ S K F+R+DG+T P +R V + +
Sbjct: 955 HRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLST 1014
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ +A V+ + +P + LQA+DR HR GQT++V+++ + ++ +E
Sbjct: 1015 HAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEE 1070
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 20/103 (19%), Positives = 45/103 (43%)
Query: 640 KDTTDESHWQNLN-KSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQV 698
K+ T E + +L K L+ S +G+ ++ G SD D ++L + +
Sbjct: 1220 KNMTFEQYKAHLEAKKLKNGKSKKDGEKSKKKKGKSRGRK--NKSDDEDSSDDELDDEGI 1277
Query: 699 ASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESK 741
+S D + +++ ++ N +DE T + +++E +
Sbjct: 1278 SSDDDDNNINNNNNNNDNNNKNNNNNDDEETGAIQKQIVERRR 1320
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 22/107 (20%), Positives = 42/107 (39%)
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKT 742
SD + + S+ + + +SD Q + S+ ++ N N+ K N+ E S
Sbjct: 1425 SDDSPKPSKKSLMSETETSDNEQSMDSGDNSNNNNNNNNSNNNNNNNEKNNNSNGEPS-- 1482
Query: 743 DHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELD 789
++ E + + NV+ PG R + + + EE D
Sbjct: 1483 ENGSQENVNGNGNVASTAATNGTSVHTPGKRGRKKKIRPNPEDEEKD 1529
Score = 41 (19.5 bits), Expect = 6.8e-12, Sum P(4) = 6.8e-12
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 726 DEITAKMNDKLLEESKTDHSPTETDDHHNNV 756
D++ K +D K+ S TET D+ ++
Sbjct: 1419 DDLKGKSDDSPKPSKKSLMSETETSDNEQSM 1449
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 57 SALADPNSTTQLPENFRV 74
S++ D +TTQLPE+ V
Sbjct: 419 SSIYD-TTTTQLPESILV 435
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 731 KMNDKLLEESKTDHSPTETDDHHNNVS 757
K +D+ + + D +DD NN++
Sbjct: 1261 KSDDEDSSDDELDDEGISSDDDDNNIN 1287
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 148 (57.2 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 53/210 (25%), Positives = 97/210 (46%)
Query: 177 RPEHLSDEVVDEMIGKLPKSLLD--VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTL 231
R +L+ + E + K P SLL + +QLEG+++ + ++ADEMGLGKT+
Sbjct: 361 RQFNLAIHSIQEKVTKQP-SLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTI 419
Query: 232 QAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
Q IA+ A + + G L++ P + +W E W P + A ++ + +
Sbjct: 420 QTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAP-SISAFLYDGSKEKRTEIRA 478
Query: 288 T----RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXX 343
+F V++ Y ++ R + + + DW +IVDE H ++ +
Sbjct: 479 RIAGGKF-NVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLK-----NHECALAKTLGTG 532
Query: 344 XXXXRIVLLSGTPSLSRPYDIFHQINMLWP 373
R +LL+GTP + +++ +N L P
Sbjct: 533 YRIKRRLLLTGTPIQNSLQELWSLLNFLLP 562
Score = 113 (44.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 45/238 (18%), Positives = 100/238 (42%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKXXXXXX 589
+++++F+ +++D ++ ++S ++R+DG+T R + F + +
Sbjct: 712 HRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLST 771
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A ++ + +P + QAEDRAHR GQ V +++ + + +E +
Sbjct: 772 RAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILE 831
Query: 650 NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709
+ + + A + LE + +G+ L D V S +E+ +
Sbjct: 832 RAKQKMGIDAKVIQAGLFNTTSTAQDRREMLE--EIMSKGTSSLGED-VPSE---REINR 885
Query: 710 VPESSEASDFRAINTNDEITAKMNDK--LLEESKTDH--SPTETDDHHNNVSQYTGRI 763
+ +E + ++E K N K L+EE + +ET + N + G +
Sbjct: 886 LAARTEEEFWMFEQMDEERRKKENYKTRLMEEKEVPEWAYTSETQEDKTNAKNHFGSL 943
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 135 (52.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 59/255 (23%), Positives = 113/255 (44%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E I + P L+ L +Q++G+++ + L +ADEMGLGKT+Q I++ I
Sbjct: 521 IKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHII 580
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVV 295
G LV+ P +W E E+W P R R+ +V++
Sbjct: 581 ERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIRWGNFQVLL 640
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGT 355
+Y + + R + + W +IVDE H ++ ++ + R++L +GT
Sbjct: 641 TTYEYIIKDRPILSKIKWTHMIVDEGHRMK----NTQSKLSSTLSQYYTSRYRLIL-TGT 695
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + +++ +N + P + K F + + G Q ++ D ++ +L +
Sbjct: 696 PLQNNLPELWALLNFVLPNIFKSVK-SFDEWFNTPFANTGGQDRM--DLTEEEQLLVIRR 752
Query: 416 LLK--QTVMIRRLKQ 428
L K + ++RRLK+
Sbjct: 753 LHKVLRPFLLRRLKK 767
Score = 129 (50.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 40/184 (21%), Positives = 84/184 (45%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKXXXXXX 589
+++++F ++++ +++F+ +G+ ++R+DG+T DR + F +E
Sbjct: 873 HRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLST 932
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQ + V I ++ +E +
Sbjct: 933 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVEEKILE 992
Query: 650 NLNKSL----RCVSS------ATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
L + + + +TN + DAL +E + + D +D + +A
Sbjct: 993 RAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDEMDDDDLNNIMA 1052
Query: 700 SSDQ 703
SD+
Sbjct: 1053 RSDE 1056
Score = 46 (21.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
+A+LS +E + HP A+ DG A+ + NP S
Sbjct: 1343 VAELS--KE-VEAHPQFADFDGPANSNDNPVS 1371
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 150 (57.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKXXXX 587
P ++++IF+ K+L+ +Q+ ++ G F+RIDG T DR V FQ +
Sbjct: 746 PEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLL 805
Query: 588 XXXXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L + A V+ ++ +PS Q+ DRA+R GQT V +Y T +E
Sbjct: 806 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEE 863
Score = 111 (44.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 48/215 (22%), Positives = 90/215 (41%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACFISAGSI--- 246
LP + ++ P Q EG+ + L G+ ++ D+MGLGKT+Q + A + I
Sbjct: 369 LPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRA 428
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIH--LVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
LVV P L W +EL + + + + H+ + +++ +Y ++
Sbjct: 429 LVVAPKTLLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRNN 488
Query: 305 RKSM------IEQD------WALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLL 352
K++ ++D W +I+DE H ++ P +++
Sbjct: 489 TKALQGDDHYTDEDDEDGNKWDYMILDEGHLIK------NPNTQRAKSLLEIPSSHRIII 542
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
SGTP + +++ N PGLLG + F + Y
Sbjct: 543 SGTPIQNNLKELWALFNFSCPGLLGDKNW-FKQNY 576
Score = 38 (18.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAK 501
+D DE DD C L E+ I K
Sbjct: 309 RDLDEDDDDDDCLILSGKKAAEMKINK 335
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 134 (52.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 43/181 (23%), Positives = 81/181 (44%)
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKXXXXXX 589
+K ++F +++ +++++ K ++R+DG+T DR S + F ++V
Sbjct: 1204 HKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLST 1263
Query: 590 XXXXXXLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
L+ +A V+ + +P LQA+DRAHR GQT V I + + +E+
Sbjct: 1264 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILS 1323
Query: 650 NLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSE-DLTLDQVASSDQFQEL 707
L GK+D + E ++L + D + DLT ++ D+ EL
Sbjct: 1324 RAQYKLDLDGKVIQAGKFDN-KSTPEEREAFLRSLLEHDGDDDHDLTYGEL-QDDELNEL 1381
Query: 708 M 708
+
Sbjct: 1382 I 1382
Score = 131 (51.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 52/239 (21%), Positives = 105/239 (43%)
Query: 204 FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+ + L L +ADEMGLGKT+Q IA I G L++ P
Sbjct: 872 YQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLT 931
Query: 257 SWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
+W E E+W P + P + + + + F V++ ++ + + R +
Sbjct: 932 NWIMEFEKWAPSVKKIAYKGPPQLRKTL---QSQIRSSNF-NVLLTTFEYIIKDRPLLSR 987
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEXXXXXXXXXXXXRIVLLSGTPSLSRPYDIFHQINM 370
W +I+DE H ++ ++ + R++L +GTP + +++ +N
Sbjct: 988 IKWVHMIIDEGHRIK----NTQSKLTSTLSTYYHSQYRLIL-TGTPLQNNLPELWALLNF 1042
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL-EELNVLLKQTVMIRRLKQ 428
+ P + K F + + G Q ++ + + + + + L+ +L+ + RRLK+
Sbjct: 1043 VLPKIFNSIK-SFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRP-FLFRRLKK 1099
WARNING: HSPs involving 255 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 997 924 0.00091 122 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 505
No. of states in DFA: 634 (67 KB)
Total size of DFA: 491 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 78.72u 0.10s 78.82t Elapsed: 00:00:05
Total cpu time: 78.83u 0.10s 78.93t Elapsed: 00:00:06
Start: Tue May 21 09:59:35 2013 End: Tue May 21 09:59:41 2013
WARNINGS ISSUED: 2