BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001912
(997 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255547283|ref|XP_002514699.1| ATP binding protein, putative [Ricinus communis]
gi|223546303|gb|EEF47805.1| ATP binding protein, putative [Ricinus communis]
Length = 1229
Score = 1355 bits (3508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/1104 (63%), Positives = 813/1104 (73%), Gaps = 109/1104 (9%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQ-DAWRLSKCRKFS---------TE 50
M ITEEQR+RAE+NRLAALAKRK +S +Q + W+L KCRK S T+
Sbjct: 1 MPITEEQRERAESNRLAALAKRKVFTESVINQQQQQHNPWKLFKCRKLSSDRISTTSTTQ 60
Query: 51 PTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWL 110
+ P A DPNS L + FRVRLEICSPDSFS+TP A+ GF+Y GEEECLRRL +L
Sbjct: 61 HSKPPPLAPIDPNSDAHLGQKFRVRLEICSPDSFSLTPEALRGFIYAGEEECLRRLNVFL 120
Query: 111 SDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDT 170
+DVMPSHYTQN+ GGKACVYKLRDY+ VL+CLKN IE+E IP+ TL+VV++LSHS +T
Sbjct: 121 ADVMPSHYTQNHGGGKACVYKLRDYDAVLSCLKNYKVIEIEKIPFGTLHVVQRLSHSFET 180
Query: 171 GRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKT 230
GRW P RPEH +DE VDE+IG LP+ +LDV+LPFQL+G+RFGLRRGGRCLIADEMGLGKT
Sbjct: 181 GRWEPIRPEHFTDEKVDELIGNLPRKILDVLLPFQLDGLRFGLRRGGRCLIADEMGLGKT 240
Query: 231 LQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
LQAIAIA CF++ G ILVVCPAILR SWAEELERWLP CLP++IHLVFGH+NNP +LTR
Sbjct: 241 LQAIAIAGCFMNEGPILVVCPAILRFSWAEELERWLPSCLPSEIHLVFGHQNNPAYLTRC 300
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
PRVVVIS+ MLH L KSM+E++WALLIVDESHHVRCSK+ SEP E+KAVLDVAAKVKR+V
Sbjct: 301 PRVVVISFKMLHHLGKSMLEREWALLIVDESHHVRCSKKKSEPNEIKAVLDVAAKVKRMV 360
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
LLSGTPSLSRPYDIFHQINM PGLLG++KYDFAKTYC +K V +G+ FQDFS+G RL
Sbjct: 361 LLSGTPSLSRPYDIFHQINM--PGLLGQSKYDFAKTYCAIKHVPTSEGKSFQDFSRGTRL 418
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
EELN+LL QTVMIRRLK+H++ QLPPKRRQIIR+LLK+S IVSAK A G ++D+ +A
Sbjct: 419 EELNMLLTQTVMIRRLKKHVMEQLPPKRRQIIRILLKKSNIVSAKGAFGTMSDNASEALL 478
Query: 471 DKT-PKDSDEH---------DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
T +D+ H G+ C+L K+SYQELGIAKL FREWLSIHP+I ESDG
Sbjct: 479 KFTIHEDNTLHAFTLYLHFLSGCGSFCKLNKLSYQELGIAKLPAFREWLSIHPLITESDG 538
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
A++DVN S KMIIFAHH KVLDGVQE I EKGIGFVRIDGNTLPRDRQSAV SFQ SN
Sbjct: 539 VAELDVNCISQKMIIFAHHHKVLDGVQELIFEKGIGFVRIDGNTLPRDRQSAVRSFQSSN 598
Query: 581 E---VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
E VKIAIIG+TAGGVGLDFSSAQNVVFLELPQS SLMLQAEDRAHRRGQT+AVNIYIF
Sbjct: 599 EASIVKIAIIGVTAGGVGLDFSSAQNVVFLELPQSSSLMLQAEDRAHRRGQTNAVNIYIF 658
Query: 638 CAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLE----------MSDKT- 686
CAKDT DE HWQ LNKSL VSS TNGKYDA+ EI V+GVSYLE +SDK
Sbjct: 659 CAKDTVDERHWQYLNKSLHRVSSTTNGKYDAVPEIPVDGVSYLESTSEGSSGNQISDKAS 718
Query: 687 -------------------------------DRGSE------------DLTLD-QVASSD 702
DR E D L ++AS+
Sbjct: 719 YAKLSAITEDSCTAKNMQPFENHDEAAGTLIDRSEEHPSYGATAVQTDDFHLKVELASTA 778
Query: 703 QFQELMKVPESSEASDFRAINTND---------EITAKMNDKLLEESKTDHSPT---ETD 750
+EL SE++ I+++ EI + N + +H P E D
Sbjct: 779 LDKELYNYIAESESNSDGGISSSKLDKGNGSEHEIEKEQNPLSQTKETYNHVPALGNEAD 838
Query: 751 DHHNN--------VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEEL---------DNTEH 793
+ +N VS+YTGRIHLYSC+ GTD RP+PLFE+FRPEE+ +N E
Sbjct: 839 ETFSNQVYSLRFEVSKYTGRIHLYSCILGTDPRPQPLFENFRPEEIESFNSLVANNNNES 898
Query: 794 ISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGL 853
+ K P YRHA+ AFI EWN LRPIER KL+GK LQLPLS+ELCYL E INHS+ GL
Sbjct: 899 ATKPFKGIPPYRHALLAFIKEWNKLRPIERRKLVGKTLQLPLSIELCYLNENINHSTEGL 958
Query: 854 LKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTC 913
LKGGSKRR TP EIS+PLPSGA WK V + S KKEK+YTQGWT+ DEPLCKLCQ C
Sbjct: 959 LKGGSKRRMTPWFEISYPLPSGAVWKNVNLSSSYGKKEKQYTQGWTLMDEPLCKLCQTPC 1018
Query: 914 KSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIK 973
K NAK E+FEDLFCNL CYEEYR+RTS R LR+ELF+IE+GVCTNCQLDCHKLVK I+
Sbjct: 1019 KGSNAKTPEFFEDLFCNLSCYEEYRIRTSSRSLRQELFQIEYGVCTNCQLDCHKLVKTIQ 1078
Query: 974 PLSLEQRRKYIVRVAPNVASRQNM 997
PL+LE+RR+YI +VAPN+ASR+ +
Sbjct: 1079 PLTLERRREYIEKVAPNLASRKKL 1102
>gi|297733908|emb|CBI15155.3| unnamed protein product [Vitis vinifera]
Length = 1201
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1061 (64%), Positives = 803/1061 (75%), Gaps = 68/1061 (6%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHF------ 54
MEITEEQR+RAEANRLAAL KRKA A + + D W+L KCRK S E T
Sbjct: 1 MEITEEQRKRAEANRLAALEKRKA----ALEPAKQSDPWKLFKCRKVSRESTSAATAIHP 56
Query: 55 --PKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSD 112
P++A D L E FRVRLEICSPDSFS+TP A+ GF YPGE ECL+RL L++
Sbjct: 57 PKPQNASNDAFLKPHLTEKFRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLAN 116
Query: 113 VMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGR 172
V+PSHYTQN+SGGKACVYKL DY+ VL CLKNS GIE E IPW T NVVE+LSHS +
Sbjct: 117 VVPSHYTQNHSGGKACVYKLGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLSHSFVLEQ 176
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQ 232
W PCRPEHLSD+ VDE+IG LPK LLD +LPFQL+GVRFGLRRGGRCLIADEMGLGKTLQ
Sbjct: 177 WMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQ 236
Query: 233 A-IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291
+ C I+ G ILVVCPAILR SWAEELERWLPFCLPADIHLVFGH+NNP HLTR P
Sbjct: 237 VRVTTECCDINEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGHQNNPAHLTRCP 296
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVL 351
RVVVISYTMLHRLRKSM+E++W LLIVDESHH++C+K+ SEP+++KAVLDVA KV+RIVL
Sbjct: 297 RVVVISYTMLHRLRKSMLEREWPLLIVDESHHLQCTKKKSEPQKIKAVLDVAMKVRRIVL 356
Query: 352 LSGTPSLSR-PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
LSGTPSLSR PYDIFHQINMLWPGLLG+ KY+FAK YC V V+G QG++FQDFSKG+RL
Sbjct: 357 LSGTPSLSRLPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRL 416
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN-DSEKDAT 469
EELNVLLKQTVMIRRLK+H+L +LPPKRRQIIRLLLKR++I A AA V D+ ++
Sbjct: 417 EELNVLLKQTVMIRRLKEHVLGELPPKRRQIIRLLLKRADIDFAIAATRVTKCDASENNV 476
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
++ P D+ D GA K+S Q+LGIAKLSGF EWLS HP++A+SDG A +D+ PR
Sbjct: 477 AEEKPSDNKPDDSGGAHSSSKKLSNQQLGIAKLSGFLEWLSFHPIVADSDGVASLDMKPR 536
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
KMIIFAHHLKVLDG+QEFI +KGIGFVRIDGNTL RDRQSAV SF+ S EVKIAIIGI
Sbjct: 537 CLKMIIFAHHLKVLDGIQEFICKKGIGFVRIDGNTLARDRQSAVLSFRSSTEVKIAIIGI 596
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
TAGG GLDFSSAQNVVFLELPQSPS+MLQAEDRAHRRGQT+AVNIYIFCAKDT DESHWQ
Sbjct: 597 TAGGFGLDFSSAQNVVFLELPQSPSIMLQAEDRAHRRGQTNAVNIYIFCAKDTMDESHWQ 656
Query: 650 NLNKSLRCVSSATNGKYDALQEIAV------------------EGVSYLEMSDKTDRGSE 691
NLNKSLR VS TNGKYDA+QE+ V E +SYLE S KTDR E
Sbjct: 657 NLNKSLRRVSYTTNGKYDAIQELVVMLPLQISQLNCISLVWQAEDISYLETSCKTDRSCE 716
Query: 692 DLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSP----- 746
+ D +L+K+ + A D + +++ +ND+L + +T+
Sbjct: 717 IRDVGYATGCDISTKLIKLSNTGLAQDMQPREAYIKVSETINDRLEKHGETEMQEVSVSS 776
Query: 747 ---------------------TETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRP 785
+E +D + VSQYTGRIHLYSC+PG DSRPRPLFE+FRP
Sbjct: 777 GELEGNAVTLGRVSFCKLSRQSEDEDKMHKVSQYTGRIHLYSCIPGIDSRPRPLFENFRP 836
Query: 786 EEL--------DNTEHISGC-LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLS 836
EEL DN++ + +K+NP YR + AF+ EWN LRPIE+ KLL KPLQLPL+
Sbjct: 837 EELDPLQSTGVDNSKKTTLIPVKDNPAYRDVLLAFVKEWNNLRPIEQKKLLQKPLQLPLT 896
Query: 837 VELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ 896
VELC L E INHSSGGLLK GSKRRTTP +IS+PLPS A WKKV +CSG K+ KEYTQ
Sbjct: 897 VELCCLSEGINHSSGGLLKRGSKRRTTPLGDISYPLPSNAVWKKVYLCSGYGKRVKEYTQ 956
Query: 897 GWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHG 956
GWT+ DEPLCKLCQ CK+ NAK ++FEDLFC+L CYEEYR+RTS R LR+ELF+IEHG
Sbjct: 957 GWTLMDEPLCKLCQTPCKNSNAKTPDFFEDLFCSLGCYEEYRIRTSNRSLRQELFQIEHG 1016
Query: 957 VCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
+CT+CQLDCHKLV++IKPLSL RR+YI +VAP +A R+N+
Sbjct: 1017 ICTSCQLDCHKLVQYIKPLSLTGRREYIEKVAPRLAVRKNL 1057
>gi|42567734|ref|NP_196398.2| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
gi|332003824|gb|AED91207.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
Length = 1190
Score = 1206 bits (3121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1082 (56%), Positives = 764/1082 (70%), Gaps = 97/1082 (8%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASN--RQDAWRLSKCRKFSTEPTHFPKSA 58
ME++EEQR+R EA RLA KRK QS ++ N RQ +RL+KCRK P+
Sbjct: 1 MEVSEEQRRRDEATRLAFAEKRK---QSFDSSENPQRQQDFRLAKCRKLDGSNDVCPQEG 57
Query: 59 LADPNS----TTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVM 114
+ +T +PE FRVRLEICSPDSFSVTP+ ++GF P E+ECLR+L + LSD +
Sbjct: 58 YRNYEPVRVLSTSVPEKFRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLRKILSDAI 117
Query: 115 PSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWN 174
P HYTQN+ GGKA VYK+RDYN V CLK S +EVEG+PW TL VVEKLS S +G+W
Sbjct: 118 PLHYTQNDDGGKAGVYKIRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLSQSYISGKWQ 177
Query: 175 PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI 234
PC PEH ++E V+++I LP+ L++ +LPFQL+G+RFGLRRGGRC IADEMGLGKTLQAI
Sbjct: 178 PCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAI 237
Query: 235 AIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294
AIA CFIS GSILVVCPA+LR +WAEELERWLP CLP+D+HLVFGH++NP +L R+P+VV
Sbjct: 238 AIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWPKVV 297
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
VISY ML LR +M+E++WALLIVDESHH+RCSK+ S+P E+K VLDVA KVK I+LLSG
Sbjct: 298 VISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSG 357
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TPS+SRP+DIFHQINMLWPGLLGK KY+FAKTYC+V V+G QG++FQDFSKG RL ELN
Sbjct: 358 TPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELN 417
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--------GVIND-SE 465
+LL QTVMIRRLKQHLL QLPPKRRQI+ +LLK+S+I A A V G I + +E
Sbjct: 418 ILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGAIAEVTE 477
Query: 466 KDATNDKTPKDSDE-------------HDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
K D+ + S+E D C GK+SYQ+LGIAKLS FREWLS+H
Sbjct: 478 KSHEPDQNARGSNEAGHVNAENSDGPNSDKENQLC--GKLSYQQLGIAKLSAFREWLSLH 535
Query: 513 PVIAESD-GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
P+++ D +ID + S KM++FAHH KVLDG+QEFI +KGIGFVRIDG TLPRDRQ
Sbjct: 536 PLLSGLDYTPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQL 595
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
AV SFQ S+EVKIAIIG+ AGGVGLDFS+AQNVVFLELP++PSL+LQAEDRAHRRGQTSA
Sbjct: 596 AVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSA 655
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSE 691
VN+YIFCAKDT DES+WQNLNK L +SS T+GKYD EI + G S + ++++ SE
Sbjct: 656 VNVYIFCAKDTMDESNWQNLNKKLHRISSTTDGKYDGKTEIEIGGASIFKPAEES---SE 712
Query: 692 DLTLDQVASSDQFQELMKVPES-----SEASDFRAINTNDEITAKMN------------- 733
L+ S K+ ES +E I+ D++T+++
Sbjct: 713 REVLEGQPSESNTVVADKIVESCDDPGTETDVSNTIDLKDDMTSQLEILEVCPFVENGSG 772
Query: 734 -----------DKLLEESKTDHSPTE-------------------TDDHHNNVSQYTGRI 763
L +E++ +H P D VSQ TGRI
Sbjct: 773 SGMRSSGTISLTMLAQENQENHKPKNLIADDGLVKEVDSSSIFPLIDSLRFEVSQNTGRI 832
Query: 764 HLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKE--------NPGYRHAIQAFINEW 815
HLYSC+PG D RPRP F++FRPEE++ + G KE +P + AI F+ EW
Sbjct: 833 HLYSCIPGKDPRPRPHFQNFRPEEIEASNPSQGTTKEKNPESITDDPVHVLAILEFMKEW 892
Query: 816 NALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSG 875
+LRPIE+ KLLGKPLQLPLS+EL YL E+ +H+S GLL+GGSKRR TP EIS PLP
Sbjct: 893 KSLRPIEKRKLLGKPLQLPLSLELSYLSESTSHNSEGLLRGGSKRRNTPFSEISIPLPEN 952
Query: 876 AEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYE 935
A W KV + SG ++KEKEYTQ W++++EPLCKLCQK C NAK EY EDLFC L CYE
Sbjct: 953 AVWIKVNLRSGHQRKEKEYTQAWSMSNEPLCKLCQKPCAGYNAKEPEYLEDLFCELACYE 1012
Query: 936 EYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQ 995
+YR RTS R++R+ IEHG+CTNC+LDCH+LVK ++PL LE+RR YI + AP + +R+
Sbjct: 1013 DYRTRTSSRYIRQ----IEHGICTNCKLDCHQLVKRLRPLPLEKRRTYINKAAPELFARK 1068
Query: 996 NM 997
N+
Sbjct: 1069 NL 1070
>gi|297810883|ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319162|gb|EFH49584.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 1194
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1092 (56%), Positives = 768/1092 (70%), Gaps = 112/1092 (10%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEP--------- 51
ME++EEQR+R EANRLA KRK S+ +QD +RL+KCRK
Sbjct: 1 MEVSEEQRRRDEANRLAFSEKRKTSFDSSENPQRQQD-FRLAKCRKLDGGNDVCFQEGYR 59
Query: 52 THFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLS 111
+ P+ L +T +PE FRVRLEICSPDSFSVTP+ ++GF P E+ECLR+L + LS
Sbjct: 60 NYEPERGL-----STSVPEKFRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLREILS 114
Query: 112 DVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTG 171
+ +P HYTQN+ GGKA VYK+RDYN V CLK S +EVE IPW TL VVEKLS S +G
Sbjct: 115 EAIPLHYTQNDDGGKAGVYKIRDYNMVSGCLKRSKSVEVEEIPWKTLAVVEKLSQSFISG 174
Query: 172 RWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTL 231
+W PC PEH ++E V+++I LP+ L+ +LPFQL+G+RFGLRRGGRC IADEMGLGKTL
Sbjct: 175 KWQPCIPEHYTEEKVEKLIETLPRKLVSALLPFQLDGLRFGLRRGGRCFIADEMGLGKTL 234
Query: 232 QAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291
QAIAIA CFIS GSILVVCPA+LR SWAEELERWLPFCLP+DIHLVFGH++NP +L R+P
Sbjct: 235 QAIAIAGCFISEGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGHQDNPAYLPRWP 294
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVL 351
+VVVISY ML LR +M+E++WALLIVDESHH+RCSK+ S+P E+K VL+VA KVK IVL
Sbjct: 295 KVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLNVAEKVKHIVL 354
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
LSGTPS+SRP+DIFHQIN+LWPGLLGK KY+FAKTYC+V V+G QG++FQDFSKG RL
Sbjct: 355 LSGTPSISRPFDIFHQINILWPGLLGKEKYEFAKTYCEVGLVRGMQGKIFQDFSKGTRLL 414
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN---DSEKDA 468
ELN+LL QTVMIRRLKQH+L QLPPKRRQI+ +LLK+S+I A A V N + + D
Sbjct: 415 ELNILLNQTVMIRRLKQHVLTQLPPKRRQIVTILLKKSDIALATAIVSEANQKANKQNDG 474
Query: 469 T------NDKTPKDSD------------EHDDSGACCR----LGKISYQELGIAKLSGFR 506
T N PKD + E+ D R GK+SYQ+LGIAKLS FR
Sbjct: 475 TIAEVTENSHEPKDQNAQGSNEAGHVNAENSDGPNSDRENQLCGKLSYQQLGIAKLSAFR 534
Query: 507 EWLSIHPVIAESD-GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
EWLS+HP+++ D DID + S KM++FAHH KVLDG+QEF+ +KGIGFVRIDG TL
Sbjct: 535 EWLSLHPLLSGLDYTPEDIDGDTSSTKMVVFAHHHKVLDGIQEFMCDKGIGFVRIDGMTL 594
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
PRDRQ AV SFQ S+EVK+AIIG+ AGGVGLDFS+AQNVVFLELP++PSL+LQAEDRAHR
Sbjct: 595 PRDRQLAVQSFQFSSEVKVAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHR 654
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLE---- 681
RGQTSAVN+YIFCAKDT DES+WQNLNK L +SS T+GKYD EI +E +
Sbjct: 655 RGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISSTTDGKYDGKTEIEIERAYIFKPDEE 714
Query: 682 -----------------MSDKT-----DRGSE-------DLTLDQVASSDQFQELMKVPE 712
++DK D GSE DL D + S + E+ K E
Sbjct: 715 SSEREVLEAQPSKANTVVADKIVESCDDLGSETDVSNTIDLK-DDMTSHLEILEVCKFVE 773
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTE-------------------TDDHH 753
+ S+ R+ T I M D +E++ +H P D
Sbjct: 774 NGSGSEMRSSGT---ICLTMLD---QENQENHQPKNLIADDGLVKEFDSSSIFPLIDSLR 827
Query: 754 NNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELD--------NTEHISGCLKENPGYR 805
VSQ TGRIHLYSC+ G D RPRP F++FRPEE++ N E + ++P +
Sbjct: 828 FEVSQNTGRIHLYSCILGKDPRPRPHFQNFRPEEIEASNPSQGPNKEKNPESITDDPVHV 887
Query: 806 HAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPS 865
AI F+ EW +LRPIE+ KLLGKPLQLPLS+EL YL E+ +H++ GLL+GGSKRR TP
Sbjct: 888 LAILEFMKEWKSLRPIEKRKLLGKPLQLPLSLELSYLSESTSHNNEGLLRGGSKRRNTPF 947
Query: 866 LEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFE 925
EIS P+P A WKKV + SG +KKEKEYTQ W++++EPLCKLCQK CK NAK EYFE
Sbjct: 948 SEISIPVPENAVWKKVNLRSGHQKKEKEYTQAWSMSNEPLCKLCQKPCKGNNAKEPEYFE 1007
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIV 985
DLFC+L CYE+YR RTS R++R+ IEHG+CTNC+LDCH+LV+ ++PL LE+RR YI
Sbjct: 1008 DLFCDLACYEDYRTRTSSRYIRQ----IEHGICTNCELDCHQLVRRLRPLPLEKRRTYIN 1063
Query: 986 RVAPNVASRQNM 997
+VAP + +R+N+
Sbjct: 1064 KVAPELFARKNL 1075
>gi|356519100|ref|XP_003528212.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Glycine max]
Length = 1193
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 639/1113 (57%), Positives = 776/1113 (69%), Gaps = 144/1113 (12%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQS-------------ATTASNRQDAWRLSKCRKF 47
ME+TEEQR++ EANR AA+AKRKA +S ++ + W L KC+KF
Sbjct: 1 MELTEEQRRQVEANRAAAIAKRKAFLESREEEQQQQKNPEGENNSNTNPNPWNLFKCQKF 60
Query: 48 STEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLG 107
P S P F RLEICSPDSFS+TPL + F +PG + CL L
Sbjct: 61 --------------PLSPKPQPPKFLARLEICSPDSFSITPLPLSSFPFPGHQHCLNTLS 106
Query: 108 QWLSD--VMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEG---IPWVTLNVVE 162
LS V+PSHYTQ + G K CV+KL +Y VL LK +A EV IPW T NVVE
Sbjct: 107 STLSQQHVVPSHYTQTSEGEKVCVFKLAEYRAVLKQLKAAAAAEVLLVEEIPWATFNVVE 166
Query: 163 KLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIA 222
LS S GRW P RPEHL D+ VD +IG+LP++LL+ +LPFQ +G+RF LRRG RCLIA
Sbjct: 167 CLSRSFAAGRWAPVRPEHLPDDEVDRLIGRLPRTLLERLLPFQHDGLRFALRRGARCLIA 226
Query: 223 DEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
D+MGLGKTLQAIAIA CF+ GSILVVCPA+LR SWAEELERWLP CLPAD+HLVFGH++
Sbjct: 227 DDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRYSWAEELERWLPSCLPADVHLVFGHQD 286
Query: 283 NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV 342
NP++L R PRVVVISYTMLHRLRKSM+E++WALLI+DESHHVRC+K+T EP E++AVLDV
Sbjct: 287 NPIYLKRSPRVVVISYTMLHRLRKSMLEREWALLIIDESHHVRCTKKT-EPGEIQAVLDV 345
Query: 343 AAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ 402
A+KVKRI+LLSGTPSLSRPYDI+HQINM PGLLGK KY+FAKTYCD+K ++G QG+ F
Sbjct: 346 ASKVKRIILLSGTPSLSRPYDIYHQINM--PGLLGKTKYEFAKTYCDLKYIKGIQGKFFA 403
Query: 403 DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN 462
D+SKGVRLEELNVLLKQTVMIRRLK+H+++QLPPKRRQIIRLL+KRS+IV+AK VGV N
Sbjct: 404 DYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTVVGVFN 463
Query: 463 DSEKDATNDKTPKDS-DEHDDSGACCR----LGKISYQELGIAKLSGFREWLSIHPVIAE 517
+ ++ P ++ DE D+ + GK+SYQELGIAKLSGFREWL++HP+IA
Sbjct: 464 IDASERESEDVPLETLDEPDEVSSFIYSTFLSGKLSYQELGIAKLSGFREWLALHPIIAG 523
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
S+ A+ KMIIFAHH KVLDGVQ F+ EKGI FVRIDGNTL RDRQSAV SF+
Sbjct: 524 SENAS---------KMIIFAHHHKVLDGVQVFLCEKGISFVRIDGNTLARDRQSAVVSFR 574
Query: 578 LSNE------------VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
S E VKIAIIGI A G GLDFS+AQ+VVFLELP+ P++MLQAEDRAHR
Sbjct: 575 SSPEVSQPLHFSPQVIVKIAIIGILAAGFGLDFSTAQDVVFLELPKCPTIMLQAEDRAHR 634
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685
RGQT+AVN+YIFCAKDT DESHW+NLNKSL+ VS T+GKYDA++EI VEG+SYL+ S
Sbjct: 635 RGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLN 694
Query: 686 TDRGSE---------DLTLDQVASSDQFQELMK----------VPESSEASDFRAINTND 726
+D E + LD+ S++ E + S ++S+ A N +
Sbjct: 695 SDNCEEQSARRDAVGETQLDKQPSAENSNESEANRDDKSDETFLNNSIQSSNIMAENISC 754
Query: 727 EITAKMN--------------DKLLEESKTDH------------SPTETDDHHN-NVSQY 759
+ K + ++ E+S D S TE DD+ + N+ +
Sbjct: 755 QDLGKASVLDGTCDVDVFDGMERCPEKSFEDGDQEIRLQDLKKISTTEADDNQSVNLVEV 814
Query: 760 TG------------------RIHLYSCVPGTDSRPRPLFESFRPEELD------------ 789
G RIHLY+C+ GTD RP+PL E+FRPEEL+
Sbjct: 815 NGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLHENFRPEELELLSSVADDEKQA 874
Query: 790 -----NTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKE 844
TE ++ +K+NP YRHA+ AF EW LR IER KLLGKPLQLPL+VELCYL E
Sbjct: 875 HDEKQKTEFVT--VKDNPAYRHALMAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSE 932
Query: 845 TINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEP 904
+ NH++ GLL GGSKRR TP +EIS+PLPS A W+KV + SG KKEKEYTQGW++ DEP
Sbjct: 933 SNNHNNKGLLNGGSKRRRTPLMEISYPLPSDAVWRKVSLRSGLGKKEKEYTQGWSVTDEP 992
Query: 905 LCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLD 964
LCKLCQK C + NAK E+FEDLFCNL CYEEYR+RTS RFLREELF+IEHGVCTNCQ D
Sbjct: 993 LCKLCQKQCLANNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQFD 1052
Query: 965 CHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
CHKLV+ I+PLSLE+RR+YI +VAP VA R+ M
Sbjct: 1053 CHKLVEDIRPLSLERRREYIEKVAPKVAKRKKM 1085
>gi|10176715|dbj|BAB09945.1| unnamed protein product [Arabidopsis thaliana]
Length = 1178
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/1082 (55%), Positives = 752/1082 (69%), Gaps = 109/1082 (10%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASN--RQDAWRLSKCRKFSTEPTHFPKSA 58
ME++EEQR+R EA RLA KRK QS ++ N RQ +RL+KCRK P+
Sbjct: 1 MEVSEEQRRRDEATRLAFAEKRK---QSFDSSENPQRQQDFRLAKCRKLDGSNDVCPQEG 57
Query: 59 LADPNS----TTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVM 114
+ +T +PE FRVRLEICSPDSFSVTP+ ++GF P E+ECLR+L + LSD +
Sbjct: 58 YRNYEPVRVLSTSVPEKFRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLRKILSDAI 117
Query: 115 PSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWN 174
P HYTQN+ GGKA VYK+RDYN V CLK S +EVEG+PW TL VVEKLS S +G+W
Sbjct: 118 PLHYTQNDDGGKAGVYKIRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLSQSYISGKWQ 177
Query: 175 PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI 234
PC PEH ++E V+++I LP+ L++ +LPFQL+G+RFGLRRGGRC IADEMGLGKTLQAI
Sbjct: 178 PCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAI 237
Query: 235 AIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294
AIA CFIS GSILVVCPA+LR +WAEELERWLP CLP+D+HLVFGH++NP +L R+P+VV
Sbjct: 238 AIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWPKVV 297
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
VISY ML LR +M+E++WALLIVDESHH+RCSK+ S+P E+K VLDVA KVK I+LLSG
Sbjct: 298 VISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSG 357
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TPS+SR PGLLGK KY+FAKTYC+V V+G QG++FQDFSKG RL ELN
Sbjct: 358 TPSVSR------------PGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELN 405
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--------GVIND-SE 465
+LL QTVMIRRLKQHLL QLPPKRRQI+ +LLK+S+I A A V G I + +E
Sbjct: 406 ILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGAIAEVTE 465
Query: 466 KDATNDKTPKDSDE-------------HDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
K D+ + S+E D C GK+SYQ+LGIAKLS FREWLS+H
Sbjct: 466 KSHEPDQNARGSNEAGHVNAENSDGPNSDKENQLC--GKLSYQQLGIAKLSAFREWLSLH 523
Query: 513 PVIAESD-GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
P+++ D +ID + S KM++FAHH KVLDG+QEFI +KGIGFVRIDG TLPRDRQ
Sbjct: 524 PLLSGLDYTPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQL 583
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
AV SFQ S+EVKIAIIG+ AGGVGLDFS+AQNVVFLELP++PSL+LQAEDRAHRRGQTSA
Sbjct: 584 AVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSA 643
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSE 691
VN+YIFCAKDT DES+WQNLNK L +SS T+GKYD EI + G S + ++++ SE
Sbjct: 644 VNVYIFCAKDTMDESNWQNLNKKLHRISSTTDGKYDGKTEIEIGGASIFKPAEES---SE 700
Query: 692 DLTLDQVASSDQFQELMKVPES-----SEASDFRAINTNDEITAKMN------------- 733
L+ S K+ ES +E I+ D++T+++
Sbjct: 701 REVLEGQPSESNTVVADKIVESCDDPGTETDVSNTIDLKDDMTSQLEILEVCPFVENGSG 760
Query: 734 -----------DKLLEESKTDHSPTE-------------------TDDHHNNVSQYTGRI 763
L +E++ +H P D VSQ TGRI
Sbjct: 761 SGMRSSGTISLTMLAQENQENHKPKNLIADDGLVKEVDSSSIFPLIDSLRFEVSQNTGRI 820
Query: 764 HLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKE--------NPGYRHAIQAFINEW 815
HLYSC+PG D RPRP F++FRPEE++ + G KE +P + AI F+ EW
Sbjct: 821 HLYSCIPGKDPRPRPHFQNFRPEEIEASNPSQGTTKEKNPESITDDPVHVLAILEFMKEW 880
Query: 816 NALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSG 875
+LRPIE+ KLLGKPLQLPLS+EL YL E+ +H+S GLL+GGSKRR TP EIS PLP
Sbjct: 881 KSLRPIEKRKLLGKPLQLPLSLELSYLSESTSHNSEGLLRGGSKRRNTPFSEISIPLPEN 940
Query: 876 AEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYE 935
A W KV + SG ++KEKEYTQ W++++EPLCKLCQK C NAK EY EDLFC L CYE
Sbjct: 941 AVWIKVNLRSGHQRKEKEYTQAWSMSNEPLCKLCQKPCAGYNAKEPEYLEDLFCELACYE 1000
Query: 936 EYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQ 995
+YR RTS R++R+ IEHG+CTNC+LDCH+LVK ++PL LE+RR YI + AP + +R+
Sbjct: 1001 DYRTRTSSRYIRQ----IEHGICTNCKLDCHQLVKRLRPLPLEKRRTYINKAAPELFARK 1056
Query: 996 NM 997
N+
Sbjct: 1057 NL 1058
>gi|359491297|ref|XP_002281382.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Vitis vinifera]
Length = 1280
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/803 (64%), Positives = 602/803 (74%), Gaps = 56/803 (6%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHF------ 54
MEITEEQR+RAEANRLAAL KRKA A + + D W+L KCRK S E T
Sbjct: 1 MEITEEQRKRAEANRLAALEKRKA----ALEPAKQSDPWKLFKCRKVSRESTSAATAIHP 56
Query: 55 --PKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSD 112
P++A D L E FRVRLEICSPDSFS+TP A+ GF YPGE ECL+RL L++
Sbjct: 57 PKPQNASNDAFLKPHLTEKFRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLAN 116
Query: 113 VMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGR 172
V+PSHYTQN+SGGKACVYKL DY+ VL CLKNS GIE E IPW T NVVE+LSHS +
Sbjct: 117 VVPSHYTQNHSGGKACVYKLGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLSHSFVLEQ 176
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQ 232
W PCRPEHLSD+ VDE+IG LPK LLD +LPFQL+GVRFGLRRGGRCLIADEMGLGKTLQ
Sbjct: 177 WMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQ 236
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292
AIAIA+CF++ G ILVVCPAILR SWAEELERWLPFCLPADIHLVFGH+NNP HLTR PR
Sbjct: 237 AIAIASCFMNEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGHQNNPAHLTRCPR 296
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352
VVVISYTMLHRLRKSM+E++W LLIVDESHH++C+K+ SEP+++KAVLDVA KV+RIVLL
Sbjct: 297 VVVISYTMLHRLRKSMLEREWPLLIVDESHHLQCTKKKSEPQKIKAVLDVAMKVRRIVLL 356
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
SGTPSLSRPYDIFHQINMLWPGLLG+ KY+FAK YC V V+G QG++FQDFSKG+RLEE
Sbjct: 357 SGTPSLSRPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEE 416
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN-DSEKDATND 471
LNVLLKQTVMIRRLK+H+L +LPPKRRQIIRLLLKR++I A AA V D+ ++ +
Sbjct: 417 LNVLLKQTVMIRRLKEHVLGELPPKRRQIIRLLLKRADIDFAIAATRVTKCDASENNVAE 476
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
+ P D+ D GA K+S Q+LGIAKLSGF EWLS HP++A+SDG A +D+ PR
Sbjct: 477 EKPSDNKPDDSGGAHSSSKKLSNQQLGIAKLSGFLEWLSFHPIVADSDGVASLDMKPRCL 536
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
KMIIFAHHLKVLDG+QEFI +KGIGFVRIDGNTL RDRQSAV SF+ S EVKIAIIGITA
Sbjct: 537 KMIIFAHHLKVLDGIQEFICKKGIGFVRIDGNTLARDRQSAVLSFRSSTEVKIAIIGITA 596
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG GLDFSSAQNVVFLELPQSPS+MLQAEDRAHRRGQT+AVNIYIFCAKDT DESHWQNL
Sbjct: 597 GGFGLDFSSAQNVVFLELPQSPSIMLQAEDRAHRRGQTNAVNIYIFCAKDTMDESHWQNL 656
Query: 652 NKSLRCVSSATNGKYDALQEIA-------------------------------------- 673
NKSLR VS TNGKYDA+QE+
Sbjct: 657 NKSLRRVSYTTNGKYDAIQELEWDELYYLETLSKSSLSFLSEHYISNKEKLSSSSRLYVE 716
Query: 674 -----VEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEI 728
E +SYLE S KTDR E + D +L+K+ + A D + ++
Sbjct: 717 SFHCDAEDISYLETSCKTDRSCEIRDVGYATGCDISTKLIKLSNTGLAQDMQPREAYIKV 776
Query: 729 TAKMNDKLLEESKTDHSPTETDD 751
+ +ND+L + +T T D+
Sbjct: 777 SETINDRLEKHGETGGCSTRIDN 799
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 206/261 (78%), Gaps = 9/261 (3%)
Query: 746 PTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELD--------NTEHISGC 797
P + D VSQYTGRIHLYSC+PG DSRPRPLFE+FRPEELD N++ +
Sbjct: 876 PNQVDFLRFQVSQYTGRIHLYSCIPGIDSRPRPLFENFRPEELDPLQSTGVDNSKKTTLI 935
Query: 798 -LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKG 856
+K+NP YR + AF+ EWN LRPIE+ KLL KPLQLPL+VELC L E INHSSGGLLK
Sbjct: 936 PVKDNPAYRDVLLAFVKEWNNLRPIEQKKLLQKPLQLPLTVELCCLSEGINHSSGGLLKR 995
Query: 857 GSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSK 916
GSKRRTTP +IS+PLPS A WKKV +CSG K+ KEYTQGWT+ DEPLCKLCQ CK+
Sbjct: 996 GSKRRTTPLGDISYPLPSNAVWKKVYLCSGYGKRVKEYTQGWTLMDEPLCKLCQTPCKNS 1055
Query: 917 NAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLS 976
NAK ++FEDLFC+L CYEEYR+RTS R LR+ELF+IEHG+CT+CQLDCHKLV++IKPLS
Sbjct: 1056 NAKTPDFFEDLFCSLGCYEEYRIRTSNRSLRQELFQIEHGICTSCQLDCHKLVQYIKPLS 1115
Query: 977 LEQRRKYIVRVAPNVASRQNM 997
L RR+YI +VAP +A R+N+
Sbjct: 1116 LTGRREYIEKVAPRLAVRKNL 1136
>gi|218199966|gb|EEC82393.1| hypothetical protein OsI_26740 [Oryza sativa Indica Group]
Length = 1165
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/1075 (51%), Positives = 704/1075 (65%), Gaps = 92/1075 (8%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALA 60
M ITEEQR+R EANRLAAL +RK ++A ++ WRL+KC +F+ P
Sbjct: 1 MGITEEQRRRIEANRLAALERRKRFAEAAAADASV--GWRLAKCPRFAPPPPQPTLPPPP 58
Query: 61 DPNSTTQLPE-------NFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDV 113
P F+V LE+C P+ FSV EGF YPGE ECLR + +S
Sbjct: 59 PRTLPPPPPPPPPQPPVGFKVVLEVCGPEDFSVAVGPAEGFAYPGEAECLRAVQDCISSA 118
Query: 114 MPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRW 173
P TQ+ SG V+KL DY PVL CLK G+ V+ IP+ T NV++ L
Sbjct: 119 APFSTTQSQSGHIFSVFKLMDYEPVLKCLKKLPGVAVQDIPYKTRNVIKNLPKFFAES-- 176
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
C SD+ VD ++ KLP+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQA
Sbjct: 177 --C----ASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQA 230
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
IAIA C+ G +L+VCPA+LR +WAEELERW P LP DIHLVFGH+++ L P+
Sbjct: 231 IAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLPKDIHLVFGHQDSLERLGACPKA 290
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VVISY ML RLRKSM+ + WAL+I+DESH++RC+K+ E E +AVL++A V RIVLLS
Sbjct: 291 VVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKHEKNETQAVLELAPNVSRIVLLS 350
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTPSLSRP+DI+HQINMLWP LLG K+DFA YC + TVQG G+ +QDFSKG RL EL
Sbjct: 351 GTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTEL 410
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK------- 466
NVLL QT+MIRRLK+HLL +LPPKRRQIIRL L S+I +A + + +N S++
Sbjct: 411 NVLLSQTLMIRRLKEHLLNELPPKRRQIIRLKLNASDIKTAISCIKGVNTSDEIPTIASP 470
Query: 467 DATNDKTPKDSDE------------------------HDDSGACCRLG--KISYQELGIA 500
D +ND + +E H + C+ ++ QE+GI
Sbjct: 471 DNSNDSEEVNMEEGFKISKIGLSAPYKHCAHFLVFPFHLPTADGCKKSPRNLTTQEIGIV 530
Query: 501 KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
K+ GF EW H ++ E +D K IIFAHHLKVLDGVQ F++E+ I +VRI
Sbjct: 531 KIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRI 590
Query: 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
DG+T PR+R+ AV SF+L+ EV +AIIGITAGGVGLDFSSAQNVVF+ELP+S S +LQAE
Sbjct: 591 DGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVFVELPKSASELLQAE 650
Query: 621 DRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
DRAHRRGQT+AVNIYIFCA++T DESHW +LN+SL VSS NGK DA++EI V+ V +L
Sbjct: 651 DRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIREIEVDQVYHL 710
Query: 681 EMSDKTDRGSEDLTL--------------DQVASSDQ-FQELMKVPESSEASDFRAINT- 724
E S K++ S+ L + V S D + + + + SDF +I T
Sbjct: 711 EESSKSEGKSQLGFLPLENHNADCGHGPGENVESDDMSIENFPGLNDMNFESDFFSIRTI 770
Query: 725 -----NDEITAKMND----KLLEESKTDHS---------PTETDDHHNNVSQYTGRIHLY 766
+D + M + EE D S P+ + VSQ+TGRIHLY
Sbjct: 771 PLHFEDDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKVSQHTGRIHLY 830
Query: 767 SCVPGTDSRPRPLFESFRPEEL------DNTEHISG-CLKENPGYRHAIQAFINEWNALR 819
CVPG DSRPRPLFE+F PEE+ DNT S LK +P + + +AF+ EW ALR
Sbjct: 831 ICVPGHDSRPRPLFENFLPEEVESPLCSDNTMKTSNRLLKRDPAFCNTFKAFVKEWLALR 890
Query: 820 PIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWK 879
PIE+ +LLGKPLQLPLS+ELCYLK+T NHS+ GLLKGGSKRR TP +IS+PLP AEW+
Sbjct: 891 PIEQKRLLGKPLQLPLSLELCYLKDTNNHSTKGLLKGGSKRRVTPWCDISNPLPENAEWR 950
Query: 880 KVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRL 939
KV + +G+ +E+EYTQGWT++DEPLCKLCQ C + AK+ EYFEDLFC L C+E +R
Sbjct: 951 KVVLHNGT-SREREYTQGWTVHDEPLCKLCQGPCNGRLAKSPEYFEDLFCGLPCFEVFRS 1009
Query: 940 RTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASR 994
RTSG F R+ LF IEHG+C+ C+LDCH+LVK+I+PL ++R +YI VAPN+ASR
Sbjct: 1010 RTSGWFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKREEYIRNVAPNIASR 1064
>gi|222637395|gb|EEE67527.1| hypothetical protein OsJ_24993 [Oryza sativa Japonica Group]
Length = 1174
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/1085 (51%), Positives = 705/1085 (64%), Gaps = 102/1085 (9%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALA 60
M ITEEQR+R EANRLAAL +RK ++A ++ WRL+KC +F+ P
Sbjct: 1 MGITEEQRRRIEANRLAALERRKRFAEAAAADASV--GWRLAKCPRFAPPPPQPTLPPPP 58
Query: 61 DPNSTTQLPE-------NFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDV 113
P F+V LE+C P+ FSV EGF YPGE ECLR + +S
Sbjct: 59 PRTLPPPPPPPPPQPPVGFKVVLEVCGPEDFSVAVGPAEGFAYPGEAECLRAVQDCISSA 118
Query: 114 MPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRW 173
P TQ+ SG V+KL DY PVL CLK G+ V+ IP+ T NV++ L
Sbjct: 119 APFSTTQSQSGHIFSVFKLMDYEPVLKCLKKLPGVAVQDIPYKTRNVIKNLPKFFAES-- 176
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
C SD+ VD ++ KLP+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQA
Sbjct: 177 --C----ASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQA 230
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
IAIA C+ G +L+VCPA+LR +WAEELERW P LP DIHLVFGH+++ L P+
Sbjct: 231 IAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLPKDIHLVFGHQDSLERLGACPKA 290
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VVISY ML RLRKSM+ + WAL+I+DESH++RC+K+ E E +AVL++A V RIVLLS
Sbjct: 291 VVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKHEKNETQAVLELAPNVSRIVLLS 350
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTPSLSRP+DI+HQINMLWP LLG K+DFA YC + TVQG G+ +QDFSKG RL EL
Sbjct: 351 GTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTEL 410
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK------- 466
NVLL QT+MIRRLK+HLL +LPPKRRQII L L S+I +A + + +N S++
Sbjct: 411 NVLLSQTLMIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASP 470
Query: 467 DATNDKTPKDSDE------------------------HDDSGACCRLG--KISYQELGIA 500
D +ND + +E H + C+ ++ QE+GI
Sbjct: 471 DNSNDSEEVNMEEGFKISKIGLSAPYKHCAHFLVFPFHLPTADGCKKSPRNLTTQEIGIV 530
Query: 501 KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
K+ GF EW H ++ E +D K IIFAHHLKVLDGVQ F++E+ I +VRI
Sbjct: 531 KIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRI 590
Query: 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
DG+T PR+R+ AV SF+L+ EV +AIIGITAGGVGLDFSSAQNVVF+ELP+S S +LQAE
Sbjct: 591 DGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVFVELPKSASELLQAE 650
Query: 621 DRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
DRAHRRGQT+AVNIYIFCA++T DESHW +LN+SL VSS NGK DA++EI V+ V +L
Sbjct: 651 DRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKKDAIREIEVDQVYHL 710
Query: 681 EMSDKTDRGSEDLTL--------------DQVASSD----QFQELMKVPESSEASDFRAI 722
E S K++ S+ L + V S D F L + S+ R I
Sbjct: 711 EESSKSEGKSQLGFLPLENHNADCGHGPGENVESDDMSIENFPGLNDMNFESDFFSIRTI 770
Query: 723 NTNDEITAKMNDKLLEE----------SKTDHS----------------PTETDDHHNNV 756
+ E+ + + ++L++ S T H P+ + V
Sbjct: 771 PLHFEVEKRRSLQILDDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKV 830
Query: 757 SQYTGRIHLYSCVPGTDSRPRPLFESFRPEEL------DNTEHISG-CLKENPGYRHAIQ 809
SQ+TGRIHLY CVPG DSRPRPLFE+F PEE+ DNT S LK +P + + +
Sbjct: 831 SQHTGRIHLYICVPGHDSRPRPLFENFLPEEVESPLCSDNTMKTSNRLLKRDPAFCNTFK 890
Query: 810 AFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEIS 869
AF+ EW ALRPIE+ +LLGKPLQLPLS+ELCYLK+T NHS+ GLLKGGSKRR TP +IS
Sbjct: 891 AFVKEWLALRPIEQKRLLGKPLQLPLSLELCYLKDTNNHSTKGLLKGGSKRRVTPWCDIS 950
Query: 870 HPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFC 929
+PLP AEW+KV + +G+ +E+EYTQGWT++DEPLCKLCQ C + AK+ EYFEDLFC
Sbjct: 951 NPLPENAEWRKVVLHNGT-SREREYTQGWTVHDEPLCKLCQGPCNGRLAKSPEYFEDLFC 1009
Query: 930 NLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAP 989
L C+E +R RTSGRF R+ LF IEHG+C+ C+LDCH+LVK+I+PL ++R +YI VAP
Sbjct: 1010 GLPCFEVFRSRTSGRFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKREEYIRNVAP 1069
Query: 990 NVASR 994
N+ASR
Sbjct: 1070 NIASR 1074
>gi|297607570|ref|NP_001060181.2| Os07g0598300 [Oryza sativa Japonica Group]
gi|255677946|dbj|BAF22095.2| Os07g0598300, partial [Oryza sativa Japonica Group]
Length = 1158
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/1071 (51%), Positives = 693/1071 (64%), Gaps = 98/1071 (9%)
Query: 9 QRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQL 68
+R EANRLAAL +RK ++A ++ WRL+KC +F+ P
Sbjct: 1 RRIEANRLAALERRKRFAEAAAADASV--GWRLAKCPRFAPPPPQPTLPPPPPRTLPPPP 58
Query: 69 PE-------NFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQN 121
P F+V LE+C P+ FSV EGF YPGE ECLR + +S P TQ+
Sbjct: 59 PPPPPQPPVGFKVVLEVCGPEDFSVAVGPAEGFAYPGEAECLRAVQDCISSAAPFSTTQS 118
Query: 122 NSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHL 181
SG V+KL DY PVL CLK G+ V+ IP+ T NV++ L C
Sbjct: 119 QSGHIFSVFKLMDYEPVLKCLKKLPGVAVQDIPYKTRNVIKNLPKFFAES----C----A 170
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI 241
SD+ VD ++ KLP+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQAIAIA C+
Sbjct: 171 SDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYK 230
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
G +L+VCPA+LR +WAEELERW P LP DIHLVFGH+++ L P+ VVISY ML
Sbjct: 231 DEGPVLIVCPAVLRYTWAEELERWDPSFLPKDIHLVFGHQDSLERLGACPKAVVISYQML 290
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
RLRKSM+ + WAL+I+DESH++RC+K+ E E +AVL++A V RIVLLSGTPSLSRP
Sbjct: 291 SRLRKSMMNRRWALMIIDESHNIRCTKKKHEKNETQAVLELAPNVSRIVLLSGTPSLSRP 350
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+DI+HQINMLWP LLG K+DFA YC + TVQG G+ +QDFSKG RL ELNVLL QT+
Sbjct: 351 FDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTL 410
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK-------DATNDKTP 474
MIRRLK+HLL +LPPKRRQII L L S+I +A + + +N S++ D +ND
Sbjct: 411 MIRRLKEHLLNELPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEE 470
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
+ +E D R ++ QE+GI K+ GF EW H ++ E +D K I
Sbjct: 471 VNMEEADGCKKSPR--NLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTI 528
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
IFAHHLKVLDGVQ F++E+ I +VRIDG+T PR+R+ AV SF+L+ EV +AIIGITAGGV
Sbjct: 529 IFAHHLKVLDGVQVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGV 588
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GLDFSSAQNVVF+ELP+S S +LQAEDRAHRRGQT+AVNIYIFCA++T DESHW +LN+S
Sbjct: 589 GLDFSSAQNVVFVELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQS 648
Query: 655 LRCVSSATNGKYDALQEIAV------------EGVSYLEM----SDKTDRG--------S 690
L VSS NGK DA++EI V EG S L + D G S
Sbjct: 649 LFRVSSLMNGKKDAIREIEVDQVYHLEESSKSEGKSQLGFLPLENHNADCGHGPGENVES 708
Query: 691 EDLT------LDQVASSDQFQELMKVPESSEASDFRAINTN-------DEI--------- 728
+D++ L+ + F + +P E + N +EI
Sbjct: 709 DDMSIENFPGLNDMNFESDFFSIRTIPLHFEDDSLHTVMQNCPSPTAHEEIAFDSSSISQ 768
Query: 729 ------------TAKMNDKLLEESKTDHSPTETDDH------HNNVSQYTGRIHLYSCVP 770
+ K +L E +T P TD + VSQ+TGRIHLY CVP
Sbjct: 769 ASVICPSMSSAKSVKARRRLSEIFQTLGLPATTDCNIEEKFLRFEVSQHTGRIHLYICVP 828
Query: 771 GTDSRPRPLFESFRPEEL------DNTEHISG-CLKENPGYRHAIQAFINEWNALRPIER 823
G DSRPRPLFE+F PEE+ DNT S LK +P + + +AF+ EW ALRPIE+
Sbjct: 829 GHDSRPRPLFENFLPEEVESPLCSDNTMKTSNRLLKRDPAFCNTFKAFVKEWLALRPIEQ 888
Query: 824 TKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRI 883
+LLGKPLQLPLS+ELCYLK+T NHS+ GLLKGGSKRR TP +IS+PLP AEW+KV +
Sbjct: 889 KRLLGKPLQLPLSLELCYLKDTNNHSTKGLLKGGSKRRVTPWCDISNPLPENAEWRKVVL 948
Query: 884 CSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSG 943
+G+ +E+EYTQGWT++DEPLCKLCQ C + AK+ EYFEDLFC L C+E +R RTSG
Sbjct: 949 HNGT-SREREYTQGWTVHDEPLCKLCQGPCNGRLAKSPEYFEDLFCGLPCFEVFRSRTSG 1007
Query: 944 RFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASR 994
RF R+ LF IEHG+C+ C+LDCH+LVK+I+PL ++R +YI VAPN+ASR
Sbjct: 1008 RFARQALFEIEHGICSKCKLDCHELVKNIRPLCKKKREEYIRNVAPNIASR 1058
>gi|449477556|ref|XP_004155056.1| PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and
endonuclease ZRANB3-like [Cucumis sativus]
Length = 1241
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/723 (68%), Positives = 567/723 (78%), Gaps = 39/723 (5%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTE--PTHFPKSA 58
M+ITEEQR+RAEANRLAA+AKRKAL +S+ + W+L KCRKFSTE + +S+
Sbjct: 1 MDITEEQRKRAEANRLAAIAKRKALVESSNGQLQHHEPWKLFKCRKFSTEFDASTTIQSS 60
Query: 59 LADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHY 118
+ + T LPE FRVRLEICSPDSFS+TP +EG YPGEE C R L LS+V SHY
Sbjct: 61 KSLTVNNTHLPEKFRVRLEICSPDSFSITPEVVEGCFYPGEENCFRILSDCLSNVTHSHY 120
Query: 119 TQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRP 178
TQ GGKACVYKLRDY +L CLKNS I+VE IPW T NVVE+LSHS +GRW PCRP
Sbjct: 121 TQIIGGGKACVYKLRDYCSILKCLKNSKDIDVEEIPWTTFNVVERLSHSFSSGRWMPCRP 180
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
EHLSDE V+E++ KLP LL+ +LPFQL+G+RFGL+RGGRCLIADEMGLGKTLQAIAIA
Sbjct: 181 EHLSDEKVEELMKKLPDRLLNRLLPFQLDGIRFGLQRGGRCLIADEMGLGKTLQAIAIAC 240
Query: 239 CFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
C + GSILVVCPA+LR WAEELERWLPFCLP+DIHLVFGH +NP HL++FP++VVIS
Sbjct: 241 CLMDEEGSILVVCPAVLRFXWAEELERWLPFCLPSDIHLVFGHLDNPCHLSKFPKIVVIS 300
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
YTML RLRKS+ +Q W+LLIVDESHHVRC+K++SEPEE+KAVLD+A KV+ I+LLSGTPS
Sbjct: 301 YTMLQRLRKSIFQQKWSLLIVDESHHVRCAKKSSEPEEIKAVLDLATKVQHIILLSGTPS 360
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
LSRPYDIFHQINM PGLLGK KY+FAKTYC VK V QG+ F+DFSKG+RL ELNVLL
Sbjct: 361 LSRPYDIFHQINM--PGLLGKTKYEFAKTYCAVKFVSTSQGKTFKDFSKGIRLNELNVLL 418
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV-GVINDSEKDATNDKTPKD 476
KQTVMIRRLK H+L QLPPKRRQIIRLLLK S+I+ AKAA VIN +D+ +
Sbjct: 419 KQTVMIRRLKVHVLAQLPPKRRQIIRLLLKSSDIIGAKAATREVIN-----CGHDRNAAE 473
Query: 477 SDEHDDS----------------------GACCRLGKISYQELGIAKLSGFREWLSIHPV 514
+ H+ S G C +GK+S+QELGIAKLSGFREW SIHP+
Sbjct: 474 NSSHNISQFQLLFELPIFFLXLISHYFSDGGDCGIGKLSFQELGIAKLSGFREWFSIHPI 533
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
I+ESDG D+D+ S KMIIFAHH KVLDG+QE + EKGI FVRIDG TL RDRQSAV
Sbjct: 534 ISESDGLMDLDLKTDSQKMIIFAHHHKVLDGLQELMCEKGIQFVRIDGTTLARDRQSAVL 593
Query: 575 SFQLSNE------VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
FQ S E VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR+HRRGQ
Sbjct: 594 LFQSSAEVXYNSCVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRSHRRGQ 653
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDR 688
T AVNIYIFCAKDT+DESHWQNLNKSLR ++S T+GKYDA+QEIAVE +SYLE ++
Sbjct: 654 TKAVNIYIFCAKDTSDESHWQNLNKSLRRITSTTDGKYDAIQEIAVEHISYLEACGRSGA 713
Query: 689 GSE 691
SE
Sbjct: 714 SSE 716
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/248 (61%), Positives = 188/248 (75%), Gaps = 6/248 (2%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTE-HISGCLK-----ENPGYRHAIQ 809
VSQYTGR+HLY+C+PG D RPRPLF +FRPEE++ + C K + Y+HA+Q
Sbjct: 862 VSQYTGRVHLYACIPGIDLRPRPLFLNFRPEEVELMNCSVDDCQKTDFNLDTTLYKHALQ 921
Query: 810 AFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEIS 869
F+ EW LRPIE+ KL GK LQLPL +ELCYLKE INH++ G+LKG S RRTTP +IS
Sbjct: 922 EFLGEWRKLRPIEQRKLHGKALQLPLDIELCYLKENINHNAAGVLKGKSLRRTTPLDDIS 981
Query: 870 HPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFC 929
PLPS A WK V++ G K++KEY QGWT+ +EPLCKLCQ C+ NAK EY EDLFC
Sbjct: 982 RPLPSSAVWKLVQLGCGFGKRKKEYAQGWTLTEEPLCKLCQTPCQGINAKAPEYLEDLFC 1041
Query: 930 NLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAP 989
NL CYEEYR+R S LR ELF++EHGVC+NC+LDCHKLVKHI+PL+L+ RR YI +VAP
Sbjct: 1042 NLGCYEEYRVRISTTSLRRELFQMEHGVCSNCRLDCHKLVKHIQPLTLDMRRDYIEKVAP 1101
Query: 990 NVASRQNM 997
N+ASR+ +
Sbjct: 1102 NLASRKKL 1109
>gi|357116480|ref|XP_003560009.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Brachypodium distachyon]
Length = 1153
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/1065 (50%), Positives = 683/1065 (64%), Gaps = 97/1065 (9%)
Query: 3 ITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADP 62
+T+EQR+R EANR++A+ + K +A + ++ + RL+KC + + P
Sbjct: 10 LTDEQRRRIEANRISAIERLKRSAAAAGSTADAGVS-RLAKCPRIAP-------PLPPRP 61
Query: 63 NSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNN 122
F LE+CSPD F VT EG +PGE ECLR + ++ +P TQ+
Sbjct: 62 CPPPAPLTGFLAVLEVCSPDEFQVTVGPAEGAAFPGESECLRAVEDCVASAVPFCTTQSQ 121
Query: 123 SGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLS 182
SG + V+KL Y VL CLK GI V+ IP+ T V+ C S
Sbjct: 122 SGHVSSVFKLVHYELVLKCLKKLPGIVVQDIPYRTRRAVQN------------CGTNWAS 169
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
D+ V++++ KLP L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQAIAIA CF
Sbjct: 170 DKEVNDLLTKLPDHLRDALLPFQLEGVKFGLRRRGRCLIADEMGLGKTLQAIAIACCFKD 229
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
GS+L+VCPA+LR +WAEELERW P LP +IHLVFG +++ +L P+VVVISY ML
Sbjct: 230 EGSLLIVCPAVLRYTWAEELERWDPSFLPKEIHLVFGRQDSLEYLDACPKVVVISYKMLS 289
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
RLRKSM+ + WAL+I+DESH++RC+K E E AVL++A + RIVLLSGTPSLSRP+
Sbjct: 290 RLRKSMVNRRWALMIIDESHNIRCTKMKEEKNETNAVLELAPNINRIVLLSGTPSLSRPF 349
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
DI+HQINML P LLG K++FAK YC + + QG+++QDFSKGVRL ELNVLL QT+M
Sbjct: 350 DIYHQINMLCPHLLGSDKFEFAKKYCSLHVARSSQGKIYQDFSKGVRLTELNVLLSQTLM 409
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLK--------RSEIVSAKAAVGVINDSEKDATNDKTP 474
IRRLK+HLL +LPPKRRQIIRL L+ S I +D+ AT++K+
Sbjct: 410 IRRLKEHLLNELPPKRRQIIRLKLRALGFKTTMASYIQEMDTGTYSSSDTPTVATSEKSN 469
Query: 475 KDSDEHDDSGACCRLGK-ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
E + C + + S QE+GIAK+ GF EW S H + D + K
Sbjct: 470 DYEAEVGEDDVCKKSPRHFSQQEIGIAKIPGFSEWFSNHLIHDNPDSQSS------CQKT 523
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
IIFAHHLKVLDGVQ F+ EKGI FVRIDG++LPR+R+ AV SF+ + EVK+ +IGITAGG
Sbjct: 524 IIFAHHLKVLDGVQVFLCEKGINFVRIDGSSLPRERKEAVDSFRSNPEVKVVVIGITAGG 583
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGLDFSSAQNVVFLELP+S S +LQAEDRAHRRGQT+AVNIYIFCAK+T+DESHW +LN+
Sbjct: 584 VGLDFSSAQNVVFLELPRSSSELLQAEDRAHRRGQTNAVNIYIFCAKNTSDESHWLHLNQ 643
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYL-EMSDKTDRGS-EDLTLDQVASSDQFQELMK-- 709
SL VSS NGK DA++EI V+ V +L E+S+ ++ E L S+D +EL++
Sbjct: 644 SLFRVSSVMNGKKDAIREIEVDQVYHLGEISNTKEKTQHESLENHDPGSNDGSKELLESD 703
Query: 710 ------VPESSEAS---DF--RAINTNDE-----ITAKMNDKLLEESKT----------- 742
VP S+ DF R+I N E + N L T
Sbjct: 704 TMSINFVPGISDMEFEWDFTIRSIPLNFEDESLHSVMQYNTALTAHEATVCNSFSISPNA 763
Query: 743 -----------------DHSPTETDDHH-------NNVSQYTGRIHLYSCVPGTDSRPRP 778
SP D H VS +TGRIHLY CVPG DSRPRP
Sbjct: 764 FCYSVPSSKSIKARRRISESPGTISDGHIQVEYLRFEVSHHTGRIHLYICVPGHDSRPRP 823
Query: 779 LFESFRPEELDNTEHIS------GCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQ 832
LF++F PEE+ + S LK NP + + + F EW ALRPI++ KLLGKPLQ
Sbjct: 824 LFQNFLPEEVQSLCSSSVKKASRQLLKSNPTFCNMFKDFFKEWLALRPIDQRKLLGKPLQ 883
Query: 833 LPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEK 892
+PLSVELCYLK +INH++ GL+KGGSKRR TP IS PLP AEW+KV + +G+ KEK
Sbjct: 884 IPLSVELCYLKNSINHTTQGLIKGGSKRRITPLSVISDPLPENAEWRKVVLHNGT-TKEK 942
Query: 893 EYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFR 952
EYTQGWT +DEPLCKLCQ CK AK+ EYFEDLFC LDC++ YRLRTS LR+ LF+
Sbjct: 943 EYTQGWTADDEPLCKLCQGLCKGNLAKSPEYFEDLFCCLDCFQNYRLRTSQGALRQALFQ 1002
Query: 953 IEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
IEHG+C+ C+LDC KLVK+IKPL + R YI VAPN+A+R+ +
Sbjct: 1003 IEHGICSQCKLDCCKLVKYIKPLGKQNREAYIRNVAPNIANRRKL 1047
>gi|34393589|dbj|BAC83216.1| putative DNA helicase [Oryza sativa Japonica Group]
Length = 1029
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/939 (53%), Positives = 628/939 (66%), Gaps = 89/939 (9%)
Query: 134 DYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL 193
DY PVL CLK G+ V+ IP+ T NV++ L C SD+ VD ++ KL
Sbjct: 2 DYEPVLKCLKKLPGVAVQDIPYKTRNVIKNLPKFFAES----C----ASDKEVDGLLMKL 53
Query: 194 PKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAI 253
P+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQAIAIA C+ G +L+VCPA+
Sbjct: 54 PQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAV 113
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDW 313
LR +WAEELERW P LP DIHLVFGH+++ L P+ VVISY ML RLRKSM+ + W
Sbjct: 114 LRYTWAEELERWDPSFLPKDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRW 173
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
AL+I+DESH++RC+K+ E E +AVL++A V RIVLLSGTPSLSRP+DI+HQINMLWP
Sbjct: 174 ALMIIDESHNIRCTKKKHEKNETQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWP 233
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
LLG K+DFA YC + TVQG G+ +QDFSKG RL ELNVLL QT+MIRRLK+HLL +
Sbjct: 234 HLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIRRLKEHLLNE 293
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK-------DATNDKTPKDSDEHDDSGAC 486
LPPKRRQII L L S+I +A + + +N S++ D +ND + +E D
Sbjct: 294 LPPKRRQIIWLKLNASDIKTAISCIKGVNTSDEIPTIASPDNSNDSEEVNMEEADGCKKS 353
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R ++ QE+GI K+ GF EW H ++ E +D K IIFAHHLKVLDGV
Sbjct: 354 PR--NLTTQEIGIVKIPGFSEWFLNHFIMKEPADNGSLDSQSNCQKTIIFAHHLKVLDGV 411
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
Q F++E+ I +VRIDG+T PR+R+ AV SF+L+ EV +AIIGITAGGVGLDFSSAQNVVF
Sbjct: 412 QVFVTEQRIKYVRIDGSTSPRERKDAVDSFRLNPEVMVAIIGITAGGVGLDFSSAQNVVF 471
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
+ELP+S S +LQAEDRAHRRGQT+AVNIYIFCA++T DESHW +LN+SL VSS NGK
Sbjct: 472 VELPKSASELLQAEDRAHRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNGKK 531
Query: 667 DALQEIAV------------EGVSYLEM----SDKTDRG--------SEDLT------LD 696
DA++EI V EG S L + D G S+D++ L+
Sbjct: 532 DAIREIEVDQVYHLEESSKSEGKSQLGFLPLENHNADCGHGPGENVESDDMSIENFPGLN 591
Query: 697 QVASSDQFQELMKVPESSEASDFRAINTN-------DEI--------------------- 728
+ F + +P E + N +EI
Sbjct: 592 DMNFESDFFSIRTIPLHFEDDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAK 651
Query: 729 TAKMNDKLLEESKTDHSPTETDDH------HNNVSQYTGRIHLYSCVPGTDSRPRPLFES 782
+ K +L E +T P TD + VSQ+TGRIHLY CVPG DSRPRPLFE+
Sbjct: 652 SVKARRRLSEIFQTLGLPATTDCNIEEKFLRFEVSQHTGRIHLYICVPGHDSRPRPLFEN 711
Query: 783 FRPEEL------DNTEHISG-CLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
F PEE+ DNT S LK +P + + +AF+ EW ALRPIE+ +LLGKPLQLPL
Sbjct: 712 FLPEEVESPLCSDNTMKTSNRLLKRDPAFCNTFKAFVKEWLALRPIEQKRLLGKPLQLPL 771
Query: 836 SVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYT 895
S+ELCYLK+T NHS+ GLLKGGSKRR TP +IS+PLP AEW+KV + +G+ +E+EYT
Sbjct: 772 SLELCYLKDTNNHSTKGLLKGGSKRRVTPWCDISNPLPENAEWRKVVLHNGT-SREREYT 830
Query: 896 QGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEH 955
QGWT++DEPLCKLCQ C + AK+ EYFEDLFC L C+E +R RTSGRF R+ LF IEH
Sbjct: 831 QGWTVHDEPLCKLCQGPCNGRLAKSPEYFEDLFCGLPCFEVFRSRTSGRFARQALFEIEH 890
Query: 956 GVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASR 994
G+C+ C+LDCH+LVK+I+PL ++R +YI VAPN+ASR
Sbjct: 891 GICSKCKLDCHELVKNIRPLCKKKREEYIRNVAPNIASR 929
>gi|449441079|ref|XP_004138311.1| PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and
endonuclease ZRANB3-like [Cucumis sativus]
Length = 1211
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/705 (66%), Positives = 546/705 (77%), Gaps = 33/705 (4%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTE--PTHFPKSA 58
M+ITEEQR+RAEANRLAA+AKRKAL +S+ + W+L KCRKFSTE + +S+
Sbjct: 1 MDITEEQRKRAEANRLAAIAKRKALVESSNGQLQHHEPWKLFKCRKFSTEFDASTTIQSS 60
Query: 59 LADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHY 118
+ + T LPE FRVRLEICSPDSFS+TP +EG YPGEE C R L LS+V SHY
Sbjct: 61 KSLTVNNTHLPEKFRVRLEICSPDSFSITPEVVEGCFYPGEENCFRILSDCLSNVTHSHY 120
Query: 119 TQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRP 178
TQ GGKACVYKLRDY +L CLKNS I+VE IPW T NVVE+LSHS +GRW PCRP
Sbjct: 121 TQIIGGGKACVYKLRDYCSILKCLKNSKDIDVEEIPWTTFNVVERLSHSFSSGRWMPCRP 180
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
EHLSDE V+E++ KLP LL+ +LPFQL+G+RFGL+RGGRCLIADEMGLGKTLQAIAIA
Sbjct: 181 EHLSDEKVEELMKKLPDRLLNRLLPFQLDGIRFGLQRGGRCLIADEMGLGKTLQAIAIAC 240
Query: 239 CFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
C + GSILVVCPA+LR SWAEELERWLPFCLP+DIHLVFGH +NP HL++FP++VVIS
Sbjct: 241 CLMDEEGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLVFGHLDNPCHLSKFPKIVVIS 300
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
YTML RLRKS+ +Q W+LLIVDESHHVRC+K++SEPEE+KAVLD+A KV+ I+LLSGTPS
Sbjct: 301 YTMLQRLRKSIFQQKWSLLIVDESHHVRCAKKSSEPEEIKAVLDLATKVQHIILLSGTPS 360
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
LSRPYDIFHQINM PGLLGK KY+FAKTYC VK V QG+ F+DFSKG+RL ELNVLL
Sbjct: 361 LSRPYDIFHQINM--PGLLGKTKYEFAKTYCAVKFVSTSQGKTFKDFSKGIRLNELNVLL 418
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV-GVINDSEKDATNDKTPKD 476
KQTVMIRRLK H+L QLPPKRRQIIRLLLK S+I+ AKAA VIN +D+ +
Sbjct: 419 KQTVMIRRLKVHVLAQLPPKRRQIIRLLLKSSDIIGAKAATREVIN-----CGHDRNAAE 473
Query: 477 SDEHDDSG----ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+ H+ G AC + + + L +R W DG D+D+ S K
Sbjct: 474 NSSHNICGEETDACDDIFRHT-------TLLWWRLW-----NWETLDGLMDLDLKTDSQK 521
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE------VKIAI 586
MIIFAHH KVLDG+QE + EKGI FVRIDG TL RDRQSAV FQ S E VKIAI
Sbjct: 522 MIIFAHHHKVLDGLQELMCEKGIQFVRIDGTTLARDRQSAVLLFQSSAEVXYNSCVKIAI 581
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR+HRRGQT AVNIYIFCAKDT+DES
Sbjct: 582 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRSHRRGQTKAVNIYIFCAKDTSDES 641
Query: 647 HWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSE 691
HWQNLNKSLR ++S T+GKYDA+QEIAVE +SYLE + + SE
Sbjct: 642 HWQNLNKSLRRITSTTDGKYDAIQEIAVEHISYLEACGRRNASSE 686
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 152/248 (61%), Positives = 188/248 (75%), Gaps = 6/248 (2%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTE-HISGCLK-----ENPGYRHAIQ 809
VSQYTGR+HLY+C+PG D RPRPLF +FRPEE++ + C K + Y+HA+Q
Sbjct: 832 VSQYTGRVHLYACIPGIDLRPRPLFLNFRPEEVELMNCSVDDCQKTDFNLDTTLYKHALQ 891
Query: 810 AFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEIS 869
F+ EW LRPIE+ KL GK LQLPL +ELCYLKE INH++ G+LKG S RRTTP +IS
Sbjct: 892 EFLGEWRKLRPIEQRKLHGKALQLPLDIELCYLKENINHNAAGVLKGKSLRRTTPLDDIS 951
Query: 870 HPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFC 929
PLPS A WK V++ G K++KEY QGWT+ +EPLCKLCQ C+ NAK EY EDLFC
Sbjct: 952 RPLPSSAVWKLVQLGCGFGKRKKEYAQGWTLTEEPLCKLCQTPCQGINAKAPEYLEDLFC 1011
Query: 930 NLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAP 989
NL CYEEYR+R S LR ELF++EHGVC+NC+LDCHKLVKHI+PL+L+ RR YI +VAP
Sbjct: 1012 NLGCYEEYRVRISTTSLRRELFQMEHGVCSNCRLDCHKLVKHIQPLTLDMRRDYIEKVAP 1071
Query: 990 NVASRQNM 997
N+ASR+ +
Sbjct: 1072 NLASRKKL 1079
>gi|6562295|emb|CAB62593.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 786
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/766 (59%), Positives = 558/766 (72%), Gaps = 54/766 (7%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASN--RQDAWRLSKCRKFSTEPTHFPKSA 58
ME++EEQR+R EA RLA KRK QS ++ N RQ +RL+KCRK P+
Sbjct: 1 MEVSEEQRRRDEATRLAFAEKRK---QSFDSSENPQRQQDFRLAKCRKLDGSNDVCPQEG 57
Query: 59 LADPNS----TTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVM 114
+ +T +PE FRVRLEICSPDSFSVTP+ ++GF P E+ECLR+L + LSD +
Sbjct: 58 YRNYEPVRVLSTSVPEKFRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLRKILSDAI 117
Query: 115 PSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWN 174
P HYTQN+ GGKA VYK+RDYN V CLK S +EVEG+PW TL VVEKLS S +G+W
Sbjct: 118 PLHYTQNDDGGKAGVYKIRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLSQSYISGKWQ 177
Query: 175 PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI 234
PC PEH ++E V+++I LP+ L++ +LPFQL+G+RFGLRRGGRC IADEMGLGKTLQAI
Sbjct: 178 PCLPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAI 237
Query: 235 AIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294
AIA CFIS GSILVVCPA+LR +WAEELERWLP CLP+D+HLVFGH++NP +L R+P+VV
Sbjct: 238 AIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWPKVV 297
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
VISY ML LR +M+E++WALLIVDESHH+RCSK+ S+P E+K VLDVA KVK I+LLSG
Sbjct: 298 VISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSG 357
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TPS+SR PGLLGK KY+FAKTYC+V V+G QG++FQDFSKG RL ELN
Sbjct: 358 TPSVSR------------PGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELN 405
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--------GVIND-SE 465
+LL QTVMIRRLKQHLL QLPPKRRQI+ +LLK+S+I A A V G I + +E
Sbjct: 406 ILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGAIAEVTE 465
Query: 466 KDATNDKTPKDSDE-------------HDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
K D+ + S+E D C GK+SYQ+LGIAKLS FREWLS+H
Sbjct: 466 KSHEPDQNARGSNEAGHVNAENSDGPNSDKENQLC--GKLSYQQLGIAKLSAFREWLSLH 523
Query: 513 PVIAESD-GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
P+++ D +ID + S KM++FAHH KVLDG+QEFI +KGIGFVRIDG TLPRDRQ
Sbjct: 524 PLLSGLDYTPEEIDGDRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQL 583
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
AV SFQ S+EVKIAIIG+ AGGVGLDFS+AQNVVFLELP++PSL+LQAEDRAHRRGQTSA
Sbjct: 584 AVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSA 643
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSE 691
VN+YIFCAKDT DES+WQNLNK L +SS T+GKYD EI + G S + ++++ SE
Sbjct: 644 VNVYIFCAKDTMDESNWQNLNKKLHRISSTTDGKYDGKTEIEIGGASIFKPAEES---SE 700
Query: 692 DLTLDQVASSDQFQELMKVPES-----SEASDFRAINTNDEITAKM 732
L+ S K+ ES +E I+ D++T+++
Sbjct: 701 REVLEGQPSESNTVVADKIVESCDDPGTETDVSNTIDLKDDMTSQL 746
>gi|242046190|ref|XP_002460966.1| hypothetical protein SORBIDRAFT_02g038340 [Sorghum bicolor]
gi|241924343|gb|EER97487.1| hypothetical protein SORBIDRAFT_02g038340 [Sorghum bicolor]
Length = 1150
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/1101 (45%), Positives = 657/1101 (59%), Gaps = 166/1101 (15%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQ--------------QSATTASNRQDA----WRLS 42
MEITEEQR+R+EANRLAAL KRK + A T A WRL+
Sbjct: 1 MEITEEQRRRSEANRLAALEKRKRIAEAAAAAAAATAFPASGAPTFPAYDTAAAAEWRLA 60
Query: 43 KCRKFSTEPTHFPKSALADPNSTTQLPE---------NFRVRLEICSPDSFSVTPLAIEG 93
KC + + P A P + P F+V LE+CSPD F V + G
Sbjct: 61 KCPRIAPPAPQPPPFAPLPPRPSPPPPPPPTPPQPLVGFQVVLEVCSPDEFLVAVGPVVG 120
Query: 94 FVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKAC----VYKLRDYNPVLTCLKNSAGIE 149
YPGE ECL + L+ Y+ S ++ V+KL DY+ VL CLK G
Sbjct: 121 RAYPGEAECLGAVQDCLAAASVVQYSATQSLSQSAHLRPVFKLVDYDVVLKCLKKLPGAS 180
Query: 150 VEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGV 209
V+ IP T +++ + P+ SDE VDE++ KLP+ + D +LPFQLEGV
Sbjct: 181 VQEIPSSTKTIIQNIPRYPG--------PKWASDEEVDELLKKLPQQIKDALLPFQLEGV 232
Query: 210 RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFC 269
FGLRR GRCLIADEMGLGKTLQAIAIA CF GSIL+VCPA+LR SW EELERW P
Sbjct: 233 MFGLRRRGRCLIADEMGLGKTLQAIAIACCFKDEGSILIVCPAVLRYSWVEELERWDPSF 292
Query: 270 LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
+P DIH+VFG +++ HL PR V+ SY ML RLR+SM+ + WAL+IVDESH++RC+ +
Sbjct: 293 MPKDIHIVFGRQDSLEHLNATPRAVITSYQMLSRLRESMVNRTWALMIVDESHNIRCTTK 352
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
E E+ I L G +RP+DI+HQINMLWP +LG+ K+D+AK YC
Sbjct: 353 QEEKYELSLT---------ICFLLGD---NRPFDIYHQINMLWPRMLGRDKFDYAKKYCL 400
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
+ + YQG++F+DFSK IRRLK+HLL +LPPKRRQIIRL LK
Sbjct: 401 LHAARSYQGKIFKDFSKA--------------KIRRLKEHLLNELPPKRRQIIRLKLKAP 446
Query: 450 EIVSAKAA-VGVINDSEKDAT-NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+I +A ++ V +N S + T + P +E DD R ++ QE+GIAKLSGF E
Sbjct: 447 DIRAATSSCVKRMNSSSCNGTLTVELPSKEEEDDDCKKSPR--NLTPQEIGIAKLSGFSE 504
Query: 508 WLSIHPVIAESDG-AADIDVNPRSN--KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564
W S H ++ DG A+ +++P+S+ K IIFAHHLKVLDG+Q FISE GI FVRIDG+T
Sbjct: 505 WFSNHFIM---DGFGANHNLDPKSSCQKTIIFAHHLKVLDGIQVFISENGIKFVRIDGST 561
Query: 565 LPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624
L R+R+ AV SF+L EVK+AIIGITAGGVGLDFSSAQNV+F+ELP++ S +LQ
Sbjct: 562 LQRERKEAVDSFRLDPEVKVAIIGITAGGVGLDFSSAQNVIFVELPKTASELLQ------ 615
Query: 625 RRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA-----------LQEIA 673
DT+DESHW LN+SL VSS NGK DA L+EI
Sbjct: 616 ----------------DTSDESHWFQLNQSLFRVSSLMNGKKDAVREIEVDQVCQLEEIK 659
Query: 674 VE-------------------GVSYL--EMSDKTDRGSEDLTLDQ--------------- 697
+ G YL ++S G EDL D
Sbjct: 660 TKEETQCKLHPPENHNADLTHGSKYLSDDLSINGFLGIEDLEFDSDFTIRTIPLEFEDER 719
Query: 698 ---------VASSDQFQELMKVPESSEASDFRAINTNDEITAKMN-----DKLLEESKTD 743
+ + + + V S A+ I++ + A+ L + +
Sbjct: 720 PGTSLKNNPTPTVLEDRSCIDVSLSPAAAFCSVISSCKSVKARKRLSGNAGSLSQAAPVP 779
Query: 744 HSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELD-------NTEHISG 796
P + + VS++TGRIHLYSCVPG DSRP+PL E+F PEEL+ + + +
Sbjct: 780 DFPIQVESLRFEVSRHTGRIHLYSCVPGHDSRPKPLCENFLPEELNSPLCSPSDVKTRTL 839
Query: 797 CLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKG 856
LK+ P + + +AFI EW ALRPI++ KLLGKPLQLPLS+ELC+LK++INHS+ G+LKG
Sbjct: 840 LLKKIPAFCNVFKAFIKEWLALRPIDQNKLLGKPLQLPLSLELCFLKDSINHSTEGILKG 899
Query: 857 GSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSK 916
GSKRR P +S+PLP AEW++V + +G+ KE++YTQGWTI+DEPLCKLCQ C +
Sbjct: 900 GSKRRAAPLNGVSNPLPENAEWRQVVLRNGT-CKERQYTQGWTIDDEPLCKLCQGLCNGR 958
Query: 917 NAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLS 976
AK+ EYFEDLFC L C++EYRLRTSGR LR+ LF+IE G C+ C+LDC KLVKHIKPL
Sbjct: 959 LAKSPEYFEDLFCGLACFQEYRLRTSGRALRQALFQIERGKCSQCKLDCCKLVKHIKPLP 1018
Query: 977 LEQRRKYIVRVAPNVASRQNM 997
LE+R +YI +VAPN+ASR+ +
Sbjct: 1019 LEKREEYIRKVAPNIASRKKL 1039
>gi|302760235|ref|XP_002963540.1| hypothetical protein SELMODRAFT_80139 [Selaginella moellendorffii]
gi|300168808|gb|EFJ35411.1| hypothetical protein SELMODRAFT_80139 [Selaginella moellendorffii]
Length = 959
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/900 (46%), Positives = 563/900 (62%), Gaps = 65/900 (7%)
Query: 115 PSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSI-DTGRW 173
P + N + VY+LRDY V L+ G+++E IP T N + SH + + +W
Sbjct: 1 PVCWKSCNDYNRCPVYRLRDYEVVTDVLQRLPGVKLEHIPLSTRNSLRSCSHQLRNADQW 60
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
P P H D VVD+++ LP L +LPFQ +G+R+GLRRGGR LIADEMGLGKTLQA
Sbjct: 61 LPFHPRHAPDSVVDKLLLGLPWKLKQYLLPFQWDGIRYGLRRGGRVLIADEMGLGKTLQA 120
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
IAIAAC+++ GS+LVVCPA LRL WAEELERWLPF P+D+HLVFG R + + + P+V
Sbjct: 121 IAIAACYLNDGSLLVVCPASLRLVWAEELERWLPFLSPSDVHLVFG-REDDLKDLKTPKV 179
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VVISY ML RLR+S++ W ++IVDESH++RCSKR ++ EE A+++VA R V LS
Sbjct: 180 VVISYNMLRRLRESILRCSWEMVIVDESHNIRCSKRPTDSEETTALMEVARAAPRAVFLS 239
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ-GQLFQDFSKGVRLEE 412
GTPSLSRP+DIF+Q+N LWPG+LGK KY+FA+ YC + Y+ FQD+ +GVRLEE
Sbjct: 240 GTPSLSRPFDIFNQVNALWPGILGKNKYNFARNYCSSSSDAAYKFHHYFQDYQRGVRLEE 299
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK 472
LN+LL++ VMIRRLK +L QLPPKRRQIIRL L +++ AKA++ DA
Sbjct: 300 LNILLREIVMIRRLKDQILTQLPPKRRQIIRLRLSSGDMLEAKASI--------DA---- 347
Query: 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
D G+ R +++ QE+GIAKL G +WLS +P A V K
Sbjct: 348 ---------DGGSYER--QLNTQEIGIAKLKGVTDWLSNNPFSA---------VKEEMQK 387
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
+IIF HH KV++ +QEFI K I F+RIDG+T +DRQ A F+ +EVK+AI+G+TAG
Sbjct: 388 LIIFCHHHKVMNSLQEFIVRKEIEFIRIDGHTDAKDRQKATEIFRQKDEVKVAIVGVTAG 447
Query: 593 GVGLDFSSAQNVVFLELPQSPS-LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GVGLD S+A+NVVF+ELP++ S L+ QAEDRAHRRGQ SAVNIYIFCAK+T+DE HWQ+L
Sbjct: 448 GVGLDLSAARNVVFVELPKTASELVQQAEDRAHRRGQKSAVNIYIFCAKETSDECHWQSL 507
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG-SEDLTLDQVASSDQFQELMKV 710
+KSL V++ TNG DA+ + VE + D+T+ G ++ +L + + + +V
Sbjct: 508 SKSLERVTTMTNGSEDAIPGLEVE-----TLMDQTESGDTKACSLLRRCQNSLLPD--EV 560
Query: 711 PES----SEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLY 766
PE SE + A N + A + + E H E VS TGR+HLY
Sbjct: 561 PEGRRVVSETAQQNASNESWNFDAHL--LMFEVHNRYHVVIEMSPAFFQVSSNTGRVHLY 618
Query: 767 SCVPGTDSRPRPLFESFRPEELDNTEHISG---------CLKENPGYRHAIQAFINEWNA 817
L E+F+PE+L+ E I CL EN A AFI EW
Sbjct: 619 KKSLEEPPVVTALSENFKPEDLEKLEQIPSTERNLLLPTCLLENTSLVDASMAFIREWKT 678
Query: 818 LRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAE 877
LRP+ R +L G+PLQLPLS L L E + GGL+KGGSKRR P E++ PLP GA
Sbjct: 679 LRPVHRKRLYGRPLQLPLSRALSRLTE----AQGGLVKGGSKRRRRPIGELACPLPDGAS 734
Query: 878 WKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEY 937
W+ + + + Q WT +D PLCKLC + C ++++ EDLFC DC+EEY
Sbjct: 735 WRDIYL--RGNMSSRPILQAWTADDNPLCKLCHRPCTRQDSREPTTLEDLFCKSDCFEEY 792
Query: 938 RLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
+TS F+RE+LFR+E GVC C LDCH LV+ I+ L + RR YI++ AP + + +
Sbjct: 793 MTKTSSHFMREKLFRLERGVCVTCNLDCHALVECIRNLDVNLRRAYILKKAPAFGTHETL 852
>gi|168028268|ref|XP_001766650.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162682082|gb|EDQ68503.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 1180
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/942 (44%), Positives = 571/942 (60%), Gaps = 82/942 (8%)
Query: 129 VYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
VYKL+DY+ V LK + +E + IPW T V+EK + ++G P H++D V++
Sbjct: 1 VYKLKDYDKVTEALKGLSNVEYDQIPWSTRMVLEKFPRAAESGVLGV--PNHITDSEVEQ 58
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
++ KLP +L +LPFQ EGV+FGL+RGGRCL ADEMG+GKT+QAIA+A+C+ GS+LV
Sbjct: 59 LLLKLPPNLSKTLLPFQKEGVKFGLQRGGRCLFADEMGVGKTIQAIAMASCYKEEGSLLV 118
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+CPA LRL WA+ELERWLP+ P D+HLVFG +NN P+VVV S+ ML RLR+SM
Sbjct: 119 ICPASLRLVWADELERWLPYLSPVDVHLVFGRKNNLTENMELPKVVVTSFNMLTRLRESM 178
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVK---AVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + W ++IVDE+H++RC+ R E +EV AVL+V VKR+VLL+GTPSLSRP+DIF
Sbjct: 179 LSRKWGMVIVDEAHNIRCTSRKVECDEVSLTMAVLEVVQYVKRVVLLTGTPSLSRPFDIF 238
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLF----QDFSKGVRLEELNVLLKQT 420
+QIN LWP LLGK KY+FA+ YCD + + G+ F QD+S+G RL ELNVLLKQT
Sbjct: 239 NQINCLWPNLLGKNKYEFARNYCDRQWSPCGHSNFKFCVFPQDYSRGSRLTELNVLLKQT 298
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK-------------- 466
VMIRRLK+ +++QLPPKRRQ+I L L S++ AKA N E+
Sbjct: 299 VMIRRLKEDVMMQLPPKRRQLICLQLAPSDVKEAKAFTAA-NARERISVQLGEEACKCGF 357
Query: 467 ---------DATNDKTPKDSDEHDDSGACCRLGK-ISYQELGIAKLSGFREWLSIHPVIA 516
D D++ DS+E ++ A + ++ QE+G+AKL GF+EWL + + A
Sbjct: 358 TRKGFCDCEDENEDESHADSEEGENPLASKTSARSLTEQEVGVAKLRGFQEWLLNNSIFA 417
Query: 517 ESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
+ + + K+IIFAHHLKVLD +Q F+ KG+ +VRIDG+TLP+DR V+ F
Sbjct: 418 DRESQDEAT----REKIIIFAHHLKVLDTIQTFVQSKGVEYVRIDGSTLPQDRLKNVNRF 473
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
+ EVK+AI+G+ AGGVGLDFS+AQ+VVF+ELP+S S MLQAEDRAHRRGQ ++VNIYI
Sbjct: 474 RSQREVKVAIVGLQAGGVGLDFSAAQSVVFVELPKSASEMLQAEDRAHRRGQKNSVNIYI 533
Query: 637 FCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGS------ 690
F AK T D+ HWQ+L++SL VS+ TNG L+ +S + +S R S
Sbjct: 534 FVAKGTADDRHWQSLSRSLERVSTMTNGAETTLEVSCYLSLSIIRISYILSRCSDSFSCF 593
Query: 691 --------EDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMN--DKLLEES 740
+ LT + +DQF E + +SE ++ A + E+ + D L E
Sbjct: 594 LFELIELQDSLTFFALDINDQFSE--ESCMTSEITNVEAQASVKELCKSLTSVDSLTREH 651
Query: 741 KTDHSPTETDDHHN-----------------NVSQYTGRIHLYSCVPGTDSRPRPLFESF 783
+ + E D + VS TGR+HL+ SRP L +F
Sbjct: 652 ELQSNVPEFKDMTDELGFDACVEFPATSLMFEVSSNTGRVHLFRRSSDGHSRPTSLQANF 711
Query: 784 RPEELDNTEHISGC--------LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+PE+L C L + +R A F++E+N LRP+ R +L G+PL LPL
Sbjct: 712 KPEDLALFAENGICERGALPAWLIFSASHREAAILFLDEYNRLRPVLRNRLRGRPLSLPL 771
Query: 836 SVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYT 895
EL K+ ++ +GG++KGGSKRR TP E+ +P+GA W+ V + KE +
Sbjct: 772 ETELKSYKDKDHYVAGGIMKGGSKRRWTPKEEVGAKIPAGATWRTVSFHRRNGLKETKIE 831
Query: 896 QGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEH 955
Q W+ D PLCK CQ CK K + E FEDLFC C EY +TS R +REELF +E
Sbjct: 832 QAWSAEDVPLCKYCQNPCKGKRSMLPELFEDLFCQTTCLNEYSNKTSRRRIREELFDLEG 891
Query: 956 GVCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
GVC C LDCH LV+ I+PL +E R+ Y++ A + M
Sbjct: 892 GVCVKCGLDCHALVERIRPLPVELRQAYVMEKASQFTKHKRM 933
>gi|302799561|ref|XP_002981539.1| hypothetical protein SELMODRAFT_233770 [Selaginella moellendorffii]
gi|300150705|gb|EFJ17354.1| hypothetical protein SELMODRAFT_233770 [Selaginella moellendorffii]
Length = 981
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/881 (46%), Positives = 535/881 (60%), Gaps = 73/881 (8%)
Query: 129 VYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSI-DTGRWNPCRPEHLSDEVVD 187
VY+LRDY V L+ G+++E IP T N + SH + + +W P P H D VVD
Sbjct: 60 VYRLRDYEVVTDVLQRLPGVKLEHIPLSTRNSLRSCSHQLRNADQWLPFHPRHAPDSVVD 119
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+++ LP L +LPFQ +G+R+GLRRGGR LIADEMGLGKTLQAIAIAAC+++ G +L
Sbjct: 120 KLLLGLPWKLKQYLLPFQWDGIRYGLRRGGRVLIADEMGLGKTLQAIAIAACYLNDGPLL 179
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VVCPA LRL WAEELERWLPF P+D+HLVFG R + + + P+VVVISY ML RLR+S
Sbjct: 180 VVCPASLRLVWAEELERWLPFLSPSDVHLVFG-REDDLKDLKTPKVVVISYNMLRRLRES 238
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++ W +IVDESH++RCSKR ++ EE A+++VA R V LSGTPSLSRP+DIF+Q
Sbjct: 239 ILRCSWETVIVDESHNIRCSKRPTDSEETTALMEVARAAPRAVFLSGTPSLSRPFDIFNQ 298
Query: 368 INMLWPGLLGKAKYDFAKTYCDV--KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+N L C + +T FQD+ +GVRLEELN+LL++ VMIRR
Sbjct: 299 VNAL----------------CIILRETTAAQSHHYFQDYQRGVRLEELNILLREIVMIRR 342
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK +L QLPPKRRQIIRL L +++ AKA++ DA D DE
Sbjct: 343 LKDQILTQLPPKRRQIIRLRLSSGDMLEAKASI--------DA-------DGDER----- 382
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
+++ QE+GIAKL G +WLS +P A V K+IIF HH KV++
Sbjct: 383 -----QLNTQEIGIAKLKGVTDWLSNNPFSA---------VKEEMQKLIIFCHHHKVMNS 428
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+QEFI K I F+RIDG+T +DRQ A F+ +EVK+AI+G+TAGGVGLD S+A+NVV
Sbjct: 429 LQEFIVSKEIEFIRIDGHTDAKDRQKATEIFRQKDEVKVAIVGVTAGGVGLDLSAARNVV 488
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
F+ELP++ S ++QAEDRAHRRGQ SAVNIYIFCAK+T+DE HWQ+L+KSL V++ TNG
Sbjct: 489 FVELPKTASELVQAEDRAHRRGQKSAVNIYIFCAKETSDECHWQSLSKSLERVTTMTNGS 548
Query: 666 YDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTN 725
DA+ + VE + S T S D+ E +V SE + A N +
Sbjct: 549 EDAIPGLEVETLMDQTESGDTKACSLLRRCQNSLPPDEVPEGRRV--VSETAQQNASNES 606
Query: 726 DEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRP 785
A + + E H E VS TGR+HLY L E+F+P
Sbjct: 607 WNFDAHL--LMFEVHNRYHVVIEMSPAFFQVSSNTGRVHLYKKSLEEPPVVTALSENFKP 664
Query: 786 EELDNTEHISG---------CLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLS 836
E+L+ E I CL EN A AFI EW LRP+ R +L G+PLQLPLS
Sbjct: 665 EDLEKLEQIPSTERNLLLPTCLLENTSLVDASMAFIREWKTLRPVHRKRLYGRPLQLPLS 724
Query: 837 VELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ 896
L L + GGL+KGGSKRR P E++ PLP GA W+ + + SG+ + Q
Sbjct: 725 RALSRL----TGAQGGLVKGGSKRRRRPIGELACPLPDGASWRDIYL-SGN-MSSRPILQ 778
Query: 897 GWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHG 956
WT +D PLCKLC + C ++++ EDLFC DC+EEY +TS F+RE+LFR+E G
Sbjct: 779 AWTADDNPLCKLCHRPCTRQDSREPTTLEDLFCKSDCFEEYMTKTSSHFMREKLFRLERG 838
Query: 957 VCTNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
VC C LDCH LV+ I+ L + R YI++ AP + + +
Sbjct: 839 VCVTCNLDCHALVECIRNLDVNLRSAYILKKAPAFGTHETL 879
>gi|224121478|ref|XP_002318592.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222859265|gb|EEE96812.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 726
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 342/579 (59%), Positives = 392/579 (67%), Gaps = 81/579 (13%)
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
K+SYQELGIAKLSGF EWLSIHP+I+ESDG A +DVN S KMIIFAHHLKVLDGVQEF+
Sbjct: 32 KLSYQELGIAKLSGFCEWLSIHPLISESDGVAKLDVNHSSQKMIIFAHHLKVLDGVQEFV 91
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
EKG+GFVRIDGNTL DRQ+AV KIAIIGITAGGVGLDFSSAQNVVFLELP
Sbjct: 92 HEKGVGFVRIDGNTLASDRQNAV---------KIAIIGITAGGVGLDFSSAQNVVFLELP 142
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
QSPSLMLQAEDRAHRRGQ++AVNIYIFCAKDT DE+ WQNLNKSL VSS T+GKYDA+
Sbjct: 143 QSPSLMLQAEDRAHRRGQSNAVNIYIFCAKDTMDETCWQNLNKSLHRVSSITDGKYDAVP 202
Query: 671 EIAVEGVSYLEMSDKTDRGSEDLTL----------DQVASSDQFQELMKVPESSEASDFR 720
EI VE +SY SDK R S ++ + Q +D + +M + + + D
Sbjct: 203 EILVERISYFGKSDKGIRRSSEVQVKLPDSGSVWDSQPFKTDDEENVMLIGSTFQTDDLN 262
Query: 721 --AINTNDEITAK--------------------------------MNDKLLEESKTDHSP 746
A+ D +T K ND+ +E+K
Sbjct: 263 LGAVMVLDNVTDKDSVANKNLEGISEIEIRSSSRVSSSESSEGHEGNDQSEKENKLCVQT 322
Query: 747 TETDD----HHNN---------------VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE 787
TET+D N VS+YTGRIHLYSC+ G DSRP+PL+E+F+PEE
Sbjct: 323 TETNDSELAQQNEADECWSNEVYSLRFEVSKYTGRIHLYSCILGKDSRPQPLYENFQPEE 382
Query: 788 L---------DNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVE 838
L D+ E LK NP RHA+ +FI EWNALRPIER KL GK LQLPL VE
Sbjct: 383 LESLNLPAANDSKETDFKFLKGNPVSRHALLSFIKEWNALRPIERRKLRGKTLQLPLRVE 442
Query: 839 LCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGW 898
LCYL E+ NH GGLLKGGSKRR TP EISHPLPS A KKV + S +KEK+YTQGW
Sbjct: 443 LCYLNESTNHKIGGLLKGGSKRRLTPLGEISHPLPSNAILKKVHLSSSYGQKEKQYTQGW 502
Query: 899 TINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVC 958
T+ DEPLCKLCQ CK NAK YFEDLFCNL C EEYRLRTS R LR+ELF IEHGVC
Sbjct: 503 TLMDEPLCKLCQMPCKGSNAKTPVYFEDLFCNLICCEEYRLRTSSRSLRQELFEIEHGVC 562
Query: 959 TNCQLDCHKLVKHIKPLSLEQRRKYIVRVAPNVASRQNM 997
T CQLDCH+LV+ IKPLSLE+RR+YI VAPNVAS++ +
Sbjct: 563 TICQLDCHQLVRTIKPLSLERRREYIEEVAPNVASQKKL 601
>gi|224121482|ref|XP_002318593.1| hypothetical protein POPTRDRAFT_569944 [Populus trichocarpa]
gi|222859266|gb|EEE96813.1| hypothetical protein POPTRDRAFT_569944 [Populus trichocarpa]
Length = 420
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 282/429 (65%), Positives = 326/429 (75%), Gaps = 29/429 (6%)
Query: 1 MEITEEQRQRAEANRLAALAKRKAL---QQSATTASNRQDAWRLSKCRKFSTEP------ 51
M+ITEEQRQR+EANRLAAL KRKA QQ Q+ WRL KCRK S +P
Sbjct: 1 MQITEEQRQRSEANRLAALEKRKAYIINQQQQQQPPPPQNPWRLFKCRKLSPKPSSSKTT 60
Query: 52 THFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLS 111
T+ P +P+ T LP+ FRVRLEICSPDSFS+TP A++GF YPGEE+CL L LS
Sbjct: 61 TNPPLFNRVNPDLDTHLPQTFRVRLEICSPDSFSITPEAMKGFPYPGEEKCLNTLKSRLS 120
Query: 112 DVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTG 171
+ M YTQ N GG+ACVY +RDY+ VLTCLKN GIE+E IP+ TLN++++LS+S D G
Sbjct: 121 NAMEPRYTQINGGGRACVYNIRDYDVVLTCLKNCKGIEIEKIPFTTLNIIQRLSNSFDAG 180
Query: 172 RWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTL 231
RW PCRPEH +DE VDE I LP+ LLDV+LPFQ +G+RFGLRRGGRCLIADEMGLGKTL
Sbjct: 181 RWEPCRPEHFTDEKVDEFIRMLPRKLLDVLLPFQHDGLRFGLRRGGRCLIADEMGLGKTL 240
Query: 232 QAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291
QAIAIA CFI+ G ILVVCPAILR SWAEELERW+PFCLP++IHLVFGHR NP+HLTR P
Sbjct: 241 QAIAIAGCFINEGPILVVCPAILRFSWAEELERWMPFCLPSEIHLVFGHRTNPMHLTRCP 300
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVL 351
+VVVISYTMLH LRK+M+EQ+WALLIVDESHHVRCSK SEP E+KAVLDVA KVKRIVL
Sbjct: 301 KVVVISYTMLHHLRKTMLEQEWALLIVDESHHVRCSKNKSEPNEIKAVLDVAEKVKRIVL 360
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
LSGTPSLSR PGLLG+ KYDFAKTYC ++ V+ Y+G+ FQ
Sbjct: 361 LSGTPSLSR------------PGLLGQNKYDFAKTYCALRLVRTYEGKGFQVI------- 401
Query: 412 ELNVLLKQT 420
L VL K T
Sbjct: 402 -LGVLFKST 409
>gi|308808864|ref|XP_003081742.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
gi|116060208|emb|CAL56267.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
Length = 1791
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 286/882 (32%), Positives = 403/882 (45%), Gaps = 136/882 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
VD G + ++ + PFQ GV+F +RR GR LIAD+MG+GKTLQAIA+A + AG
Sbjct: 186 VDRRFGTIAGNIRRALYPFQETGVKFAIRRNGRALIADQMGVGKTLQAIAVADAYRDAGP 245
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN--------------NPVHLTRFP 291
+LV+ PA +R WA+E+ERWL P + ++FG + N T
Sbjct: 246 LLVIVPAAMRFVWADEIERWLTDVTPRQLSVIFGSGDKFLLEKLAKESREANSAAATTGR 305
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK--RTSEPEEVKAVLDVAAKVKRI 349
RVVV SY ML L +E W +I DESH++ SK SE + + + K K
Sbjct: 306 RVVVSSYHMLAPLFDEFLEVKWGCVIADESHNMHVSKSFNGSETKMTETAWKLIKKAKYA 365
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
VL +GTPSL++P+D+F+QI+ L PG+LG+ K++FA+ YCDVK + + D S G R
Sbjct: 366 VLTTGTPSLTKPFDMFYQIDALRPGMLGQTKWEFAEYYCDVK----FDMKGRSDVSGGSR 421
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
L EL LL T MIRRLK+ ++ LPPKRRQ++ + +I + A VG K A
Sbjct: 422 LLELRSLLTHTTMIRRLKKDVMGDLPPKRRQVVPI-----DIDQSIARVGGPKIWAKIAK 476
Query: 470 NDKTPK-------------DSDEHDD-----SGACCRLGK---ISYQEL-GIAKLSGFRE 507
+ P+ D DE DD + C L K +S ++ G+ K++ +
Sbjct: 477 AARAPRDEMSYGEEDDNILDEDERDDVEYVLNAKLCNLEKGRRVSVSQIVGMLKIAPIID 536
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI------SEKGIGFVRID 561
WL ESD D S + +IFAHH VLD ++ + +G +VRID
Sbjct: 537 WL-------ESDLLRD-----DSMQFVIFAHHQAVLDAIERDVCMCLEKQNRGT-YVRID 583
Query: 562 GNTLPRDRQSAVHSFQLSN--------EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
G+T +R+ V F+ V+IA++ + A G GLDFS+A VVF ELP
Sbjct: 584 GSTPSDERKVLVDKFREGAAVGADGVVSVRIALLSVKAAGTGLDFSTASCVVFAELPDDA 643
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKD---TTDESHWQNLNKSLRCVSSATNGKYDALQ 670
SL+ QAE R HRRG S VN+Y CA+ + DE WQ L L A +G
Sbjct: 644 SLLEQAEARVHRRGNDSGVNVYFLCARGGACSHDEDRWQRLESQLDVCKEAIDG------ 697
Query: 671 EIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITA 730
D L + +S + E+++ S F + T
Sbjct: 698 ----------------DDARVGLDVSAYGASIEL-------EATKKSVFSKSVVVESSTV 734
Query: 731 KMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDN 790
K D L S+ + VS +GR+H ++ G++ PL S +L
Sbjct: 735 K--DPTLSPSRVETKQATPLQLWFEVSATSGRLHAHASADGSE----PLHVSVSRSQLTR 788
Query: 791 TEHISGCLKE-------NPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSV-ELCYL 842
+ KE NP A F N WNA+ +R +L + Q P EL +
Sbjct: 789 ALASAKYAKELPEPFSSNPAAVAAALDFSNTWNAMTARDRNSILAR--QQPCRANELNEV 846
Query: 843 KETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ------ 896
E +N + G + R + PLP A+W V + +++ Y
Sbjct: 847 AEALNSKAATAATGSTSRHSRLV-----PLPKDADWCTVLVSDIAQRNRANYEMRVPCRF 901
Query: 897 -GWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEH 955
T LC C + DLFC +C Y S LR LF IE
Sbjct: 902 VPGTTRRALLCVNCVDELDRVFSDRIRRV-DLFCGEECLRAYDQGMSSSALRRALFEIER 960
Query: 956 GVCTNCQLDCHKLVKHIKPLSLEQRR-KYIVRVAPNVASRQN 996
GVC C LDC KLVKH++ +R K I+R+AP R N
Sbjct: 961 GVCVECGLDCEKLVKHVRVFKSRMKRVKEILRLAPAFEKRGN 1002
>gi|145351304|ref|XP_001420022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580255|gb|ABO98315.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1148
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 281/881 (31%), Positives = 409/881 (46%), Gaps = 135/881 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
VD + K+ + + + FQ EGVRF LRR GR LIAD+MG+GKTLQAIAIA + AG
Sbjct: 182 VDAVYEKIAPRIREALYSFQEEGVRFALRRRGRALIADQMGVGKTLQAIAIADAYRDAGP 241
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV------------HLTRFPRV 293
+L V PA +R WA+ELERWL P + ++FG + + T RV
Sbjct: 242 LLCVVPAAMRFVWADELERWLTDMTPRQLSVIFGSSDKFMLDKLAAESKTAKTWTGGRRV 301
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS--EPEEVKAVLDVAAKVKRIVL 351
VV SY ML L + + W +I DESH + SK+ E + A + + K VL
Sbjct: 302 VVTSYHMLAPLLEEFLAVKWGCVIADESHTMHVSKKYGGDETKLTDAAWRLIKRAKYAVL 361
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
+GTPSL++P+D+F+QI+ L PG+LGK K+DFA+ YCD++ Q +G+ D S G RL
Sbjct: 362 TTGTPSLTKPFDMFYQIDALRPGILGK-KWDFAEHYCDIQFDQ--KGR--SDVSGGSRLL 416
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
EL LL T M+RRLK+ ++ LPPKRRQ++ + +I + A VG K A
Sbjct: 417 ELRTLLTHTTMVRRLKRDVMRDLPPKRRQVVPI-----DITQSIARVGGPKIWSKIAKVA 471
Query: 472 KTPK-----DSDEHDDSGACC---------------RLGKISY-QELGIAKLSGFREWLS 510
+ P+ D E DD+G ++G++ + + ++++ G L
Sbjct: 472 RAPRDDLRYDDGEDDDAGNILEEDDEQDDIEYVLNQKIGELERGKRVSVSQIVGM---LK 528
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI-----SEKGIGFVRIDGNTL 565
+ P++ + + S + +IFAHH VLD ++ + ++ +VRIDG+T
Sbjct: 529 VEPIVEWLESGV---LKDDSMQFVIFAHHQAVLDALEREVCVRIQNQNRGSYVRIDGSTP 585
Query: 566 PRDRQSAVHSFQLSNE--------VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
+R+ V F+ + V++A++ + A G GLDFS+A V+F ELP SL+
Sbjct: 586 SDERKVLVDKFREGAQTREDGVVGVRVALLSVKAAGTGLDFSTASCVIFAELPDDASLLE 645
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTT---DESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
QAEDRAHRRG S VN+Y CA+ DE W L L A +G
Sbjct: 646 QAEDRAHRRGNDSGVNVYFLCARGGACAHDEDRWARLESQLDLCREALDGD--------- 696
Query: 675 EGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMND 734
E + L+ A Q + E++ S F T+ + ++
Sbjct: 697 ---------------GERVGLNVEAYGTQIE-----LEATRKSAFSVATTSKSVATEVVA 736
Query: 735 KLLE---ESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNT 791
LE E KT+ P + VS +GR+HL+ G+ PL S +L
Sbjct: 737 DALESAPEMKTEECPMWFE-----VSATSGRLHLHGKADGS----APLGASVSRSQLTRA 787
Query: 792 EHISGCLKENP--------GYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSV-ELCYL 842
+ KE P + A+ F N WNA+ +R +L + Q P EL L
Sbjct: 788 RLSAKYAKELPEPLASDPIAFAAAVD-FSNTWNAMTARDRNSILAR--QQPARAHELNEL 844
Query: 843 KETINHSSGGLLKG-GSKRRTTPSLEISHPLPSGAEWKKV---RICSGSRKKEK----EY 894
E +N + GS R + PLP A+W+ + I RK E +
Sbjct: 845 AEALNSKTAAATSATGSTTRHGRLV----PLPKEADWRTIVVTDIAKAGRKYEMRVPCRF 900
Query: 895 TQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIE 954
+G T LC C A DLFC +C Y + LR LF +E
Sbjct: 901 AEG-TSRRTLLCLHCVSDIDRITTDVARRV-DLFCGEECMRVYDQGSRASALRRALFALE 958
Query: 955 HGVCTNCQLDCHKLVKHIKPLSLEQRR-KYIVRVAPNVASR 994
GVC C+LDC LVK ++ +R I+R AP R
Sbjct: 959 RGVCVECKLDCDALVKKVRVHRKRSKRVAEILRFAPAFGER 999
>gi|428172225|gb|EKX41136.1| hypothetical protein GUITHDRAFT_142285 [Guillardia theta CCMP2712]
Length = 1294
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 204/603 (33%), Positives = 319/603 (52%), Gaps = 86/603 (14%)
Query: 106 LGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLS 165
LG D P + + G + V++L+DY V + + ++ +P VTL + KL
Sbjct: 141 LGSQQHDASPVSFATRDDGREGVVFRLQDYGKVTRRISRLHWVCMDRLPAVTLRALRKLK 200
Query: 166 HSIDTGRWNPCRPEHLSDEVVDE-----MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCL 220
G VVDE M+ +LP + + P+Q+EG++F L R RC+
Sbjct: 201 DEAFRG-------------VVDEREVGGMLERLPMGMRACLCPYQIEGIKFVLSRSCRCM 247
Query: 221 IADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGH 280
IADEMGLGK+LQA+A+AAC + A +LVV PA LRL WAEE+E+W+ + LP DIH++F
Sbjct: 248 IADEMGLGKSLQALAVAAC-LDAWPLLVVVPATLRLGWAEEIEKWITWLLPTDIHVIFSS 306
Query: 281 RNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
+ P T P+VV++SY MLHRLR ++ + W L++ DESH +R K ++ ++ +
Sbjct: 307 TDRPPQAT--PKVVIVSYKMLHRLRSDLLSRQWRLVVFDESHTLRTPKARADVQQTSTSI 364
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ V+R +LL+GTPS RP D+F Q++ L GLLG +K++FA ++C+V
Sbjct: 365 RLIRNVRRCLLLTGTPSPHRPMDMFLQLDALHAGLLGSSKFEFANSFCEVARFP------ 418
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
F + VR ELN++L +VM+RRLK+ ++ QLPPKRR +I + S + +
Sbjct: 419 FYSVGRCVRAHELNLILASSVMLRRLKKDIMKQLPPKRRCLIYAPIDCSRL-------RL 471
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
+N S ++ + K+ + + + +YQ +G+AKL +EWL H I S G
Sbjct: 472 VNASGEEKGEELQLKNHTRNHE----VLVATTAYQLVGLAKLYAAKEWLQ-HAAI--SSG 524
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
S+K+++FAHH +V++ ++ F+ + + VRIDG T R+R ++ F+
Sbjct: 525 C--------SSKIVVFAHHRRVMNELESFLLQHNVSCVRIDGETAGRERVDLLNQFRHRA 576
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
VK+A+I +TA G G+D S A +F+ P L+ RGQT V+IY A+
Sbjct: 577 HVKVALISVTASGQGVDLSVASTAIFVGAPSRHLLV--------PRGQTGCVDIYYLVAR 628
Query: 641 ------------------------DTTDESHWQNLNKSLRCVSSATNG-----KYDALQE 671
D W +L++ L VSS T+G + D E
Sbjct: 629 SPWKHYDDLLQPHCHGRDQSQHRLSNFDMHRWISLSRDLEDVSSVTDGPKNHARMDLDDE 688
Query: 672 IAV 674
IA+
Sbjct: 689 IAL 691
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
+ +LFC C EY+ +TS +LR+ + + E GVC C ++ +L K + L+ RR
Sbjct: 1020 YHELFCGGLCMMEYKEKTSQSYLRKRIAQAERGVCQACGMNARELCKVVARAQLDSRRDV 1079
Query: 984 IVRVAPNVASRQNM 997
+++ AP R+ +
Sbjct: 1080 LLQRAPEFRGREKL 1093
>gi|384246460|gb|EIE19950.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 1302
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 228/598 (38%), Positives = 319/598 (53%), Gaps = 60/598 (10%)
Query: 110 LSDVMPSHYTQNNSGGK-ACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSH 166
LS + ++ G K A + Y+ V+ L+ + G+++ G +++ ++
Sbjct: 130 LSKALTDAESEEEEGVKPAVLIGWEHYDAVVAALRKKSHHGLDLIG----RASLIPDITL 185
Query: 167 SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMG 226
+ GR+ E SD V++ G++ L +LPFQ EGVRF LRRGGR LIADEMG
Sbjct: 186 AAHKGRY-----EKASDAEVEDRFGRMAPVLARALLPFQREGVRFALRRGGRALIADEMG 240
Query: 227 LGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH 286
+GKT+QAIA+A+C+ +LVV PA LRL WAEEL RWLP +H++ G R + +
Sbjct: 241 VGKTVQAIALASCYQEEWPLLVVAPASLRLVWAEELARWLPHLRACAVHVIEG-RTDRLQ 299
Query: 287 LTRFPRVVVISYTMLHRLRKS---------------------MIEQDWALLIVDESHHVR 325
P+VVV SY ML L S M + + ++IVDESH +R
Sbjct: 300 GGPVPQVVVTSYEMLANLTCSGCCAGGPAANKTNKCAGADHCMAARGFKVVIVDESHTMR 359
Query: 326 CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAK 385
R + +A + R VLLSGTPSLSRPYD+F Q++ L PGLLG + FA
Sbjct: 360 TQDRPPDSRNTEAAVAAVRAAARAVLLSGTPSLSRPYDLFRQVDALRPGLLGPNREAFAH 419
Query: 386 TYCDVKTVQGY---QGQLFQDFSKGVRL-EELNVLLKQTVMIRRLKQHLLVQLPPKRRQI 441
YC+ + V + Q + + G+ EL+ LLKQ VM+RRLK+ ++ QLPPKRRQ+
Sbjct: 420 RYCNRRLVPVFGRGGAQRMKWCNTGLAYAAELHALLKQEVMLRRLKREVMAQLPPKRRQV 479
Query: 442 IRL--LLK-------RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+RL LK RS SA G +D ++D D + D G + +
Sbjct: 480 VRLPPPLKHHWPPELRSR--SASGEGGSQDDDDEDDDVDADRDADMDADGDGPAGQPSAM 537
Query: 493 SY-QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN--KMIIFAHHLKV------- 542
S Q G+AKL EWL H + + S A + K ++FAHH V
Sbjct: 538 SVGQRTGLAKLPNVLEWLR-HALGSTSGRATAGQAAAQEALPKFLVFAHHKSVMAKLAAA 596
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L+G + G +VRI+G T RDR+ A F+ V++A++ +TA G GLDFS+A
Sbjct: 597 LEGEEGNADWAGAEYVRIEGATDHRDRREACARFRDDPSVRVALLSVTAAGTGLDFSAAS 656
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
VVF ELP+ S + QAEDRAHR GQ VN+Y A+ T+DE WQNLN+SL VS+
Sbjct: 657 AVVFAELPEEVSSVRQAEDRAHRHGQRFPVNVYFLLARGTSDERRWQNLNRSLERVSA 714
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 140/370 (37%), Gaps = 81/370 (21%)
Query: 698 VASSDQFQELMKVPESSEASDF----RAINTN----------------DEITAKMNDKLL 737
+A D +E M VP+S + D+ R + D+ A N +
Sbjct: 802 IADEDSNEEAMVVPDSDDDEDWVPLARGVQAPPPGGTGGPTGGSSPEPDQAAAPSNSEEP 861
Query: 738 EESKTDHSPTETDDHHN----------NVSQYTGRIHLYSCVPGTD----SRPRPLFESF 783
+ +++ +P D VS++T R+H + G+D S P L
Sbjct: 862 DAAESAPAPDGADFGKALDDDRPKVWFEVSRHTNRVHFHGSAGGSDMLGLSLPMDLLTV- 920
Query: 784 RPEELDNTEHI-------------------SGCLKENPG--------YRHAIQAFINEWN 816
PE+ + I +G L PG + + F EW
Sbjct: 921 -PEDQGTPQTILDLLAAVGDREGGKAVVGQAGLLALGPGVDAKEVLRWIGEAREFAAEWG 979
Query: 817 ALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGSKRRTTPSLEISHP---LP 873
LR + + +L G P++ PL L L+E S G T L+ P LP
Sbjct: 980 ELRALHQNQLAGTPMRCPLQDALIVLEEKAKAS------GAYGISTDRQLDTGRPHMALP 1033
Query: 874 SGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFE---DLFCN 930
SGAE V + R Y Q +T + LC C K+ + + E DLFC
Sbjct: 1034 SGAELATVHVRYVGRGNTVAYKQAFTGSGARLCIHCMKSVELSTLPPSAVLEGAADLFCG 1093
Query: 931 LDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLS------LEQRRKYI 984
+ C Y LR G LR LFR+E G C C+LD L+ ++ + E+R+ +
Sbjct: 1094 VSCETAYALRAGGGALRRALFRLERGRCQICRLDTANLLARLRVIEKGTRNWKERRQARL 1153
Query: 985 VRVAPNVASR 994
++AP +R
Sbjct: 1154 AQLAPGFCTR 1163
>gi|147864189|emb|CAN78815.1| hypothetical protein VITISV_041732 [Vitis vinifera]
Length = 781
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/277 (62%), Positives = 196/277 (70%), Gaps = 15/277 (5%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHF------ 54
MEITEEQR+RAEANRLAAL KRKA +SA + D W+L KCRK S E T
Sbjct: 1 MEITEEQRKRAEANRLAALEKRKAALESA----KQSDPWKLFKCRKVSRESTSAATAIHP 56
Query: 55 --PKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSD 112
P++A D L E FRVRLEICSPDSFS+TP A+ GF YPGE ECL+RL L++
Sbjct: 57 PKPQNASNDAFLKPHLTEKFRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLAN 116
Query: 113 VMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGR 172
V+PSHYTQN+SGGKACVYKL DY+ VL CLKNS GIE E IPW T NVVE+LSHS +
Sbjct: 117 VVPSHYTQNHSGGKACVYKLGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLSHSFVLEQ 176
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQ 232
W PCRPEHLSD+ VDE+IG LPK LLD +LPFQL+GVRFGLRRGGRCLIADEMGLGKTLQ
Sbjct: 177 WMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQ 236
Query: 233 A---IAIAACFISAGSILVVCPAILRLSWAEELERWL 266
I F + +LV P + LS EE W+
Sbjct: 237 ECCDINEVTKFKLSEMVLVSFPVAVHLSSDEEGSLWV 273
>gi|34393588|dbj|BAC83215.1| DNA-dependent ATPase A-like protein [Oryza sativa Japonica Group]
Length = 361
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 220/353 (62%), Gaps = 17/353 (4%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALA 60
M ITEEQR+R EANRLAAL +RK ++A ++ WRL+KC +F+ P
Sbjct: 1 MGITEEQRRRIEANRLAALERRKRFAEAAAADASV--GWRLAKCPRFAPPPPQPTLPPPP 58
Query: 61 DPNSTTQLPE-------NFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDV 113
P F+V LE+C P+ FSV EGF YPGE ECLR + +S
Sbjct: 59 PRTLPPPPPPPPPQPPVGFKVVLEVCGPEDFSVAVGPAEGFAYPGEAECLRAVQDCISSA 118
Query: 114 MPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRW 173
P TQ+ SG V+KL DY PVL CLK G+ V+ IP+ T NV++ L
Sbjct: 119 APFSTTQSQSGHIFSVFKLMDYEPVLKCLKKLPGVAVQDIPYKTRNVIKNLPKFFAES-- 176
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
SD+ VD ++ KLP+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQA
Sbjct: 177 ------CASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQA 230
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
IAIA C+ G +L+VCPA+LR +WAEELERW P LP DIHLVFGH+++ L P+
Sbjct: 231 IAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLPKDIHLVFGHQDSLERLGACPKA 290
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV 346
VVISY ML RLRKSM+ + WAL+I+DESH++RC+K+ E EV +L A +
Sbjct: 291 VVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKHEKNEVFKLLACHATI 343
>gi|307106882|gb|EFN55126.1| hypothetical protein CHLNCDRAFT_57917 [Chlorella variabilis]
Length = 914
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 207/573 (36%), Positives = 285/573 (49%), Gaps = 87/573 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
V + ++P L +LPFQ EGV FGL R GRCLIADEMG+GKT+QAIA+A+CF
Sbjct: 340 VRALYARMPAFLEAALLPFQREGVLFGLARAGRCLIADEMGVGKTVQAIALASCFQEEWP 399
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL- 304
+LV+ PA LRL WAEELE+WLP PA IHLV G + V P V + SY M+ RL
Sbjct: 400 LLVIVPASLRLVWAEELEKWLPHLRPACIHLVEGKEDR-VARGALPLVTITSYEMMQRLT 458
Query: 305 -------------------------RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339
+ M Q W ++IVDESH +R S + + +A
Sbjct: 459 CDACKNRVVQGAGMRAGRRPSCRDLQNCMASQRWKVVIVDESHTLRTSNKPPDALHTEAT 518
Query: 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK----TVQG 395
+ +R +LL+GTPSLSRP+D+F Q++ + PGLLG + FA YC+ + TV
Sbjct: 519 VTAVKLARRAILLTGTPSLSRPFDLFRQVDAVAPGLLGANRICFASAYCNRREVALTVHN 578
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ---------------LPPKRRQ 440
+ D R EL+ +LK VM+RRLKQ +L Q LPPKRRQ
Sbjct: 579 GERTTRWDVGGLSRGGELHDMLKAEVMLRRLKQDVLSQASGMGALGRAAKSHALPPKRRQ 638
Query: 441 IIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS-----YQ 495
+IR L K + K A G ++ + + + + + + G+ +
Sbjct: 639 VIR-LPKPAASEWPKLAEGATRHADDSEGSASSASEDEGEEGAEDADGGGQSAKPMSAAH 697
Query: 496 ELGIAKLSGFREWLSIHPVIAES-------------------------DGAADIDVNPRS 530
G+AK S +WL +S DG A +
Sbjct: 698 RTGLAKASSVIDWLMTALGARKSQRQQGGTGQKAEDEEDAAGGGDPSRDGCASTSGDSGG 757
Query: 531 NKMIIFAHHLKV-------LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
K ++FAHH V L+G +++ + +VRIDG T DR+ AV F + V+
Sbjct: 758 PKFLVFAHHKTVMNRLAAALEGAKQYAP---VNYVRIDGGTDQEDRRQAVRRFHSDSAVR 814
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+A++ +TA GVGLDFS+A VVF ELP + + QAEDRAHR+GQ VN+Y CAK T
Sbjct: 815 VALLSVTAAGVGLDFSAASVVVFAELPDEVAHVRQAEDRAHRQGQRHPVNVYFLCAKGTA 874
Query: 644 DESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
D+ WQ LN+SL S+ + AV G
Sbjct: 875 DDRRWQALNRSLARASACQRHRLGNRMARAVAG 907
>gi|428170105|gb|EKX39033.1| hypothetical protein GUITHDRAFT_76774, partial [Guillardia theta
CCMP2712]
Length = 522
Score = 313 bits (803), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/486 (38%), Positives = 281/486 (57%), Gaps = 48/486 (9%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
++ LP ++ +LPFQ EGV FGL R GR LI DEMGLGKT+QAIAIAA ++ +L+
Sbjct: 68 LLEALPLTISKKLLPFQREGVLFGLAREGRVLIGDEMGLGKTVQAIAIAAAYLDEWPLLI 127
Query: 249 VCPAILRLSWAEELERWLPFCL-PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VCP+ +R WA+EL WLP L P D++ +F R+ + V +ISY + +
Sbjct: 128 VCPSSMRCMWAQELVNWLPGELTPQDVNTIFSGRD----VVGNQLVTIISYDLFCKFAPE 183
Query: 308 MIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + ++I DESH+++ +KR+ K +L +R +LL+GTP+LSRP ++F
Sbjct: 184 ISSMQFKVIIGDESHYLKNPNAKRS------KTILPFIRSARRSILLTGTPALSRPVELF 237
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ +N L P L +FA YCD +QG + S LEEL+VLL Q M+RR
Sbjct: 238 NLLNSLHPRLFNNF-LEFAYRYCD-----AHQGPFGLETSGASNLEELHVLLDQHTMVRR 291
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK+ +L QLP KRRQ ++L+K SE S + A +E D + DE +DS A
Sbjct: 292 LKKDVLTQLPAKRRQ--KILIKISEAESKRFA------TEMDKLKELERVTQDEEEDSEA 343
Query: 486 CCR-------LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
R L Y + G+AKL +E+++ D+ K ++FAH
Sbjct: 344 RFRAQSRKKALIMKMYVDTGVAKLQAIQEYVA--------------DLIECGAKFLVFAH 389
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H+++LDG+++ +S+K + ++RIDG+T R+RQ V SFQ S+ V++AI+ +TA G GL
Sbjct: 390 HMEILDGLEDVVSKKKVQYIRIDGSTPSRERQLRVSSFQESSSVRVAILSVTAAGTGLTL 449
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A VVF EL +P ++LQAEDRAHR GQ S+VN+ + T DE W +++ ++ +
Sbjct: 450 TAANLVVFAELHWTPGILLQAEDRAHRIGQQSSVNVMYLVGQGTCDELIWDSISYKVKVI 509
Query: 659 SSATNG 664
A +G
Sbjct: 510 GRALDG 515
>gi|414887452|tpg|DAA63466.1| TPA: hypothetical protein ZEAMMB73_458112 [Zea mays]
Length = 766
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/259 (57%), Positives = 197/259 (76%), Gaps = 8/259 (3%)
Query: 746 PTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELD-------NTEHISGCL 798
P + + VS++TGRIHLYSCVPG DSRP+PL E+F PEEL+ + + + L
Sbjct: 398 PIQVESLRFEVSRHTGRIHLYSCVPGHDSRPKPLCENFLPEELNSPLCSPSDVKTRTLLL 457
Query: 799 KENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLKGGS 858
K+ P + + AFI EW ALRPI++ KLLGKPLQLPL++ELC+LK++INHS+ G+LKGGS
Sbjct: 458 KKIPSFCNVFNAFIKEWLALRPIDQNKLLGKPLQLPLNLELCFLKDSINHSTEGILKGGS 517
Query: 859 KRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKSKNA 918
KRR ++S+PLP AEW++V + +G+ KE++YTQGWTI+DEPLCKLCQ C + A
Sbjct: 518 KRRAASLNDVSNPLPENAEWRQVVLRNGT-CKERQYTQGWTIDDEPLCKLCQGLCNGRLA 576
Query: 919 KNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLE 978
K+ EYFEDLFC+L C++EYRLRTSGR LR+ LF+IE G C+ C+LDC KLVKHIK L L
Sbjct: 577 KSPEYFEDLFCSLACFQEYRLRTSGRALRQALFQIERGKCSQCKLDCCKLVKHIKLLPLG 636
Query: 979 QRRKYIVRVAPNVASRQNM 997
+R +YI +VAPN+ASR+ +
Sbjct: 637 KREEYIRKVAPNIASRKKL 655
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 169/269 (62%), Gaps = 34/269 (12%)
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV-INDSEKDAT---------NDK 472
IRRLK+HLL +LPPKRRQIIRL LK +I +A ++ G +N + + T ND
Sbjct: 26 IRRLKEHLLNELPPKRRQIIRLKLKAPDIRAATSSCGKRVNPNSCNGTLTIELPSKSNDD 85
Query: 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+E DD R ++ QE+GIAKLSGF EW S H ++ D ++D K
Sbjct: 86 ENTKEEEEDDCKKSPR--SLTPQEIGIAKLSGFSEWFSNHFIMNGFDANHNLDPQSSCQK 143
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
IIFAHHLKVLDG+Q FISE I FVRIDG+TL R+R+ AV SF+L EVK+AIIGITAG
Sbjct: 144 TIIFAHHLKVLDGIQVFISENEIRFVRIDGSTLQRERKEAVDSFRLDPEVKVAIIGITAG 203
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
GVGLDFSSAQNV+F+ELP+S S +LQ +T DESHW LN
Sbjct: 204 GVGLDFSSAQNVIFVELPKSASELLQ----------------------NTLDESHWLQLN 241
Query: 653 KSLRCVSSATNGKYDALQEIAVEGVSYLE 681
+SL VSS NGK DA++EI V+ V LE
Sbjct: 242 QSLFRVSSLMNGKKDAVREIEVDQVCQLE 270
>gi|348506836|ref|XP_003440963.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Oreochromis niloticus]
Length = 1148
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 184/495 (37%), Positives = 262/495 (52%), Gaps = 36/495 (7%)
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
D E + LP LL ++PFQ EGV F L R GRC+IADEMGLGKT+QAIA+A F
Sbjct: 12 DTRWSEQLSGLPHKLLQRLMPFQREGVEFALSRNGRCMIADEMGLGKTVQAIAVAYAFRQ 71
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF--PRVVVISYTM 300
+LVV P+ L+ W EELERW+P P DI LV N H +V V+ Y +
Sbjct: 72 EWPLLVVVPSSLKYPWIEELERWIPELQPGDISLV----ENKSHTMGIGSSKVTVLGYGL 127
Query: 301 LHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
L + ++E Q +A+++VDESH+++ + K ++ + KR +LL+GTP
Sbjct: 128 LTTDARPLVEALSRQRFAVVVVDESHYLK----SRNAARTKILVPLIQSAKRAILLTGTP 183
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNV 415
+L RP ++F QI+ L+P G D+AK YC+ Y G Q D LEEL+
Sbjct: 184 ALGRPEELFMQIDALYPKRFGTWT-DYAKKYCNAHYR--YFGPHRQWDCRGASNLEELHQ 240
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
L Q +MIRRLK +L QLPPK RQ I L + A A+ G K +
Sbjct: 241 RLSQ-IMIRRLKADVLSQLPPKIRQRIPFDLPKEAAKEALASFGEWERLMKSLGSGVATT 299
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
D+ + G ++ Y++ IAK ++++ + + K ++
Sbjct: 300 DNPFTEVMGLVTQM----YKQTAIAKAGAVKDYIKMM-------------LEAEQLKFLV 342
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHHL +L E + E G++RIDG+ +R VH FQ E ++AI+ I A G G
Sbjct: 343 FAHHLTMLQACTEAVIEAKAGYIRIDGSVPSSERIQLVHKFQSEPETRVAILSIQAAGQG 402
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L F++A +VVF EL +P + QAEDRAHR GQTS+VN++ AK T D W LN+
Sbjct: 403 LTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTSSVNVHYLIAKGTFDTVMWSMLNRKE 462
Query: 656 RCVSSATNGKYDALQ 670
+ S NG+ + L+
Sbjct: 463 KVTGSTLNGRKEYLK 477
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 44/261 (16%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGYRHAIQAFIN 813
SQYT RI+LYS PL SF P + L N + + R + F
Sbjct: 809 ASQYTDRIYLYS------KDGAPLNLSFIPLDIKLTNWDDLPEAFSRRRENRIQVLRFAV 862
Query: 814 EWNALRPIERTKLLGK----------------PLQLPLSVELCYL-KETINHSS--GGLL 854
EW+ L P + KLL + Q P S YL ++ + +S
Sbjct: 863 EWSGL-PAMKQKLLRRSGLLFHSPTLGLQQLSAAQRPHSSTKRYLGRDDVAEASLSKAQE 921
Query: 855 KGGS-----------KRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDE 903
+GGS KRR+ SL S + + R E Y Q
Sbjct: 922 EGGSVRLVTKENFFTKRRSASSL-TPPATQSRQDTQSCRTSDAQPSTESSYLQAVDSQGV 980
Query: 904 PLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQL 963
PLC CQ+ C + + ++ FC+ C +E++LR+S ++R ++ E G+C +C L
Sbjct: 981 PLCLSCQQPCSTTGGE----WDTRFCSHRCQDEFQLRSSQTYMRSQVLEAERGICQHCGL 1036
Query: 964 DCHKLVKHIKPLSLEQRRKYI 984
H L ++ QR++ +
Sbjct: 1037 HAHDLFIKVRDAPPSQRKEIL 1057
>gi|410906125|ref|XP_003966542.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like
[Takifugu rubripes]
Length = 1035
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/489 (35%), Positives = 267/489 (54%), Gaps = 34/489 (6%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+ + LP LL ++PFQ EGV F L + GRC+IADEMGLGKT+QAIA+A+ F +L
Sbjct: 16 QQLSGLPHKLLQRLMPFQREGVEFALSKNGRCMIADEMGLGKTVQAIAVASAFRKEWPLL 75
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF--PRVVVISYTMLHRLR 305
VV P+ L+ W EELERW+P P DI+LV N H +V V+ Y +L
Sbjct: 76 VVVPSSLKYPWIEELERWIPELQPGDINLV----ENKSHTMGIGSSKVTVLGYGLLTTDA 131
Query: 306 KSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+++IE Q +A+++VDESH+++ + K ++ + KR VLL+GTP+L RP
Sbjct: 132 RALIEALNRQHFAVVVVDESHYLK----SRNAARTKILVPLIHSAKRAVLLTGTPALGRP 187
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
++F QI+ L+P G D+AK YC+ + + + D L+EL+ L Q +
Sbjct: 188 EELFMQIDALYPKKFGTWS-DYAKKYCNAH-YKFFGPRRQWDCRGASNLDELHQRLSQ-I 244
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
MIRRLK +L QLPPK RQ I L + +AK A + E ++ ++ E+
Sbjct: 245 MIRRLKAEVLTQLPPKVRQRIPFDLPKE---AAKEASATFAEWEILMKGQRSGVETTENP 301
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
+ + ++ Y++ +AK ++++ + + K ++FAHHL
Sbjct: 302 FTQVMGLVTQM-YKQTAVAKAGAVKDYIKMM-------------LEAEKIKFLVFAHHLT 347
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+L E + E G++RIDG+ +R VH FQ E ++A++ I A G GL F++A
Sbjct: 348 MLQACTEAVIEAKAGYIRIDGSVPSSERIQLVHKFQNDPETRVAVLSIQAAGQGLTFTAA 407
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+VVF EL +P + QAEDRAHR GQTS++N++ AK T D W LN+ S
Sbjct: 408 SHVVFAELYWNPGHIKQAEDRAHRIGQTSSINVHYLIAKGTFDTVMWSMLNRKETVTGST 467
Query: 662 TNGKYDALQ 670
NG+ + L+
Sbjct: 468 LNGRKEYLK 476
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 46/310 (14%)
Query: 706 ELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDH-----HNNVSQYT 760
E+ + P SS A +T I+AK + S++DH + T SQYT
Sbjct: 653 EMCEYPRSSSA---LKSDTKWSISAKSRIQTSSSSESDHKESSTTKPVYLGLQFCASQYT 709
Query: 761 GRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGYRHAIQAFINEWNAL 818
RI+LY+ D P L SF P + L N + + R + F+ EW +L
Sbjct: 710 DRIYLYT----KDGAPLSL--SFIPLDIKLTNWDDLPKAFSGRKENRIQVLRFVQEWCSL 763
Query: 819 RPIERTKLL---GKPLQLPL---------------------SVELCYLKETINHSSGGLL 854
+++ KLL G P+ E+ + GG +
Sbjct: 764 SAMKQ-KLLRRSGLLFHSPILGLQQQAAAQRSQSSTKRYLSKAEVAQASLSKAQQEGGSV 822
Query: 855 KGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCK 914
+ +K +P + P+ +K C S Y Q PLC CQ+ C
Sbjct: 823 RLVTKEPFSPQRSAAASPPASHSLEK-DSCLESPPSSSGYLQAVDSGGVPLCLSCQQACS 881
Query: 915 SKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKP 974
+ ++ FC+ C +++++RTS ++R + +EHG C +C L H L ++
Sbjct: 882 ASGGP----WDTRFCSHKCQDDFQMRTSQTYMRSRVLEVEHGTCQHCGLHAHDLFLKVRD 937
Query: 975 LSLEQRRKYI 984
+R++ +
Sbjct: 938 APPSKRKEML 947
>gi|326923079|ref|XP_003207769.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
domain-containing protein 3-like [Meleagris gallopavo]
Length = 1262
Score = 289 bits (739), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 186/511 (36%), Positives = 280/511 (54%), Gaps = 46/511 (9%)
Query: 176 CRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
C E E VD + LP+ L +LPFQ +G+ F L+R GRC+IADEMGLGKT+QAIA
Sbjct: 175 CTLEASYSESVDAELSFLPERLRKKLLPFQEKGIMFALQRSGRCMIADEMGLGKTIQAIA 234
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RV 293
I+ + +L+V P+ LR W +E+E+W+P P DI ++ N + R +V
Sbjct: 235 ISYYYRKEWPLLIVVPSSLRYPWVDEMEKWIPELSPDDIIII----QNKTDIGRISSSKV 290
Query: 294 VVISYTML----HRLRKSMIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVK 347
V+ Y +L L ++ Q++ ++++DESH++ R +KR+ K +L + K
Sbjct: 291 TVLGYGLLTSDAQTLVDALYRQNFKVVVIDESHYMKSRNAKRS------KILLPIVQKAT 344
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R +LL+GTP+L RP ++F QI L+PG G ++AK YCD + ++ + + D
Sbjct: 345 RAILLTGTPALGRPEELFMQIEALFPGRFGTWS-EYAKKYCDAR-LRFFGKRKQWDCRGA 402
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD 467
LEEL+ LL++ +MIRRLK +L QLPPK RQ I L ++ +AK + EK
Sbjct: 403 SNLEELHQLLRK-IMIRRLKNDVLTQLPPKIRQRIPFDLPQA---TAKNLNTTFAEWEKL 458
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADID 525
K + E DS + I+ Y+E IAK ++++ + + E+D
Sbjct: 459 MR-----KLNSESSDSHFVEVMSLITRMYKETAIAKAGAVKDYIRM---MLENDKL---- 506
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K ++FAHHL +L E + E + ++RIDG+ +R V+ FQ + ++A
Sbjct: 507 ------KFLVFAHHLSMLQACAEAVIENKVRYIRIDGSVPSAERIHLVNQFQKDPDTRVA 560
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+ AK T D
Sbjct: 561 ILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDP 620
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
W LN+ + S NGK + +Q A EG
Sbjct: 621 LMWAMLNRKAKVTGSTLNGKKERMQ--AEEG 649
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 141/350 (40%), Gaps = 71/350 (20%)
Query: 681 EMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEES 740
++S+ + R + D + +EL V + SE S+ A+ +I +K N++ E
Sbjct: 850 DVSEDSRRDEQRAAWDAEDGREDLEEL--VTKQSEISEQEAV----KIRSKENERRCGED 903
Query: 741 KTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPE--ELDNTEHISGCL 798
++D + D S+ T RIHLY+ D P L +F P +LDN E +
Sbjct: 904 QSD-AFLVYDGLMFCASRNTDRIHLYT----KDGEPLNL--NFIPLDIQLDNWEDLPENF 956
Query: 799 KENPGYRHAIQAFINEWNAL----------------RPIERTKLLGKPLQLPLSVELCYL 842
+ R I F+ EW+ L PI + + K S +
Sbjct: 957 QHKRN-RSMILRFVKEWSHLTAMKQKVVRKSGQLFCSPIHAAEEMSKKQSATSSTKRYVT 1015
Query: 843 KETI---------------------------NHSSGGLLKGGSKRRTTPSLEISHPLPSG 875
KE + N ++ G S + PS+ LPS
Sbjct: 1016 KEDVAAASLSKVSSSGGSVRLITKESRACLRNENASMAQPGHSTKXVNPSV-----LPSN 1070
Query: 876 AEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCY 934
W +V+ S K Y Q PLC CQ+ T + + A ++ FC+L C
Sbjct: 1071 --WTEVQNSS----LPKGYLQALDGEGNPLCLRCQQPTAQLDQSCQARAWDTRFCSLACQ 1124
Query: 935 EEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
EE+ +R+S +LR ++F IEHGVC C + +L +I+ QR+K +
Sbjct: 1125 EEFSVRSSQSYLRTKVFEIEHGVCQFCHQNAQELYLNIRDAPKTQRKKLL 1174
>gi|168046653|ref|XP_001775787.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162672794|gb|EDQ59326.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 657
Score = 286 bits (731), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 177/496 (35%), Positives = 268/496 (54%), Gaps = 43/496 (8%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E ++P+ L +LPFQ +GVRF L+RG R +IADEMGLGKTLQAIA+ +C +L
Sbjct: 188 EKYNEVPEHLETKLLPFQRDGVRFALQRGCRVMIADEMGLGKTLQAIAVVSCLEEDWPVL 247
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN-------NPV------HLTRFPRVV 294
+V P+ LRL WA L++WL P+DI + + N V H+
Sbjct: 248 IVVPSSLRLQWAMSLQQWLDI-RPSDITVFMSQYSSWNKEGFNIVNSATRGHVKLDGLFN 306
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
++SY ++ +L ++ E + ++I DE+H+++ ++ + A + + K K VLLSG
Sbjct: 307 IVSYDLVTKLADAISEAQFKIIIADEAHYLK----NAQAKRTNACVPLLQKAKYAVLLSG 362
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP ++F Q+ L P + ++ YC YQG L+EL+
Sbjct: 363 TPALSRPIELFKQLEALQPTVYKNGVSEYGNRYCLGGHFGMYQG--------SSNLQELH 414
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
L+K TVMIRRLK+ +L +LP KRRQ + + L+ I KA +N+ KDA
Sbjct: 415 ALVKSTVMIRRLKKDVLSELPQKRRQQVFVSLEDKGIRHMKALFHELNEI-KDAMK-LCK 472
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
+D E L KI Y E + KL +E+L+ ID K +
Sbjct: 473 EDEKERMKYSEKQLLNKI-YTESAVVKLPAVQEYLTTM-----------IDAE---CKFL 517
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+FAHH +LDG+++ + +K +G +RIDG T RQ+ V FQ ++ + A++GI A GV
Sbjct: 518 VFAHHQSMLDGIEQLLMKKKVGLIRIDGGTPQSARQALVTRFQENDNIIAAVLGIRAAGV 577
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL ++A V+F E+ +P ++QAEDRAHR GQ S+VN+Y A DT D+ W +
Sbjct: 578 GLTLTAASTVIFAEMSWTPGDLVQAEDRAHRIGQASSVNVYYLHAHDTIDDIIWDTVQNK 637
Query: 655 LRCVSSATNGKYDALQ 670
L +S +G+ + LQ
Sbjct: 638 LENLSQVLDGQENTLQ 653
>gi|428178195|gb|EKX47071.1| hypothetical protein GUITHDRAFT_69936 [Guillardia theta CCMP2712]
Length = 629
Score = 284 bits (727), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 184/552 (33%), Positives = 289/552 (52%), Gaps = 75/552 (13%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E +++ +P ++ ++PFQ EGV+FG+ GGR LIADEMGLGKTLQAIAIA F
Sbjct: 89 EEAEDLYKLIPGNIESALMPFQKEGVKFGISHGGRVLIADEMGLGKTLQAIAIACVFSQD 148
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
++ + PA +R WAEELE+WL P DI +V + V + ++V+++Y +L R
Sbjct: 149 WPVVCLMPASMRWVWAEELEKWLTDLRPGDIKVV--RSSTDVDNLKTAKMVIVTYDLLSR 206
Query: 304 ---LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L+ S+I + +IVDESH+ + + + KAV+ +A + +R VLLSGTP+L+R
Sbjct: 207 SDFLQTSLIGCGFRTIIVDESHYC----KNKDTKRTKAVMRLAKQARRCVLLSGTPALNR 262
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
P ++F QI M+ G + ++ YCD G +G+ + +EEL+ ++
Sbjct: 263 PAELFSQITMIADKTFG-SWTEYTTRYCD-----GRRGRFGWECRGATHIEELH---DKS 313
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
+MIRRLK ++ +LP KRRQ I L L ++ + S + +
Sbjct: 314 IMIRRLKNDVMSELPAKRRQHIPLELDQNSLKSIRENMN--------------------- 352
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREW--LSIHPVIAESDGAAD--IDVNPRSNKMIIF 536
++G + E + W L+ +A+++ AA +D+ K++IF
Sbjct: 353 -------KMGGLDGFERNVV-------WGELTKQTALAKAELAAQYMMDLVEGGAKLLIF 398
Query: 537 AHHLKVLDGVQEFIS---------EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
AH+L VLD +++ + K +G++RIDG DR V FQ ++V++A++
Sbjct: 399 AHYLAVLDTLEKELCRAKARSNEINKCVGYIRIDGGVSASDRPDLVKKFQTRSDVRVAVL 458
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
G+ A G GL ++A VVF EL +P +M+QAEDRAHR GQT++VN++ A+ T DE
Sbjct: 459 GLQAAGQGLTLTAASAVVFAELHVTPGVMVQAEDRAHRIGQTASVNVHYLVARQTLDECI 518
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
W+ L + L VS NGK L+ V G R S +L+ + F EL
Sbjct: 519 WRLLTRKLSVVSHTLNGKKQRLEAERVAG---------GRRDSSELSFTLPDDDEVFNEL 569
Query: 708 MKVPESSEASDF 719
P + F
Sbjct: 570 AVTPGKPDIRSF 581
>gi|440796019|gb|ELR17128.1| helicase, putative [Acanthamoeba castellanii str. Neff]
Length = 800
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 191/548 (34%), Positives = 293/548 (53%), Gaps = 59/548 (10%)
Query: 108 QWLSDVMPS-HYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGI--PWVTLNVVEKL 164
+WLSD S + ++ K + L Y +++S G+ + G PW+ V K
Sbjct: 285 KWLSDFYASVPGSTFDACTKMWTFPLSCYTSFTKAIEDSRGVTLNGPLPPWIMRLFVYKE 344
Query: 165 SHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADE 224
+P ++S + + K+P LL+ + PFQ EGV F L+R GR LIADE
Sbjct: 345 K-----------KPLNMSVQ-----LDKIPVGLLNALYPFQREGVMFALQRNGRALIADE 388
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKTLQAIAIAA + +LVV P+ +R+ WA+ E+W+P P I ++ ++NP
Sbjct: 389 MGLGKTLQAIAIAAYYKEDWPVLVVAPSSVRVQWADNFEKWIPGLRPDQIKVIMKTKDNP 448
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDV 342
L V +ISY ++ R + ++ ++ + ++I DESH ++ +KRTS ++ +L
Sbjct: 449 DGL-----VNIISYDLVVR-QTNIAQKKFRVIIADESHTIKSWKAKRTSH---LQPLLKD 499
Query: 343 AAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ 402
A +R +LL+GTP+LSRP ++F Q++ L + + DF YC G+Q +
Sbjct: 500 A---RRCILLTGTPALSRPEELFTQLHALDSQVFVRMT-DFGVRYC-----AGHQTRFCW 550
Query: 403 DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN 462
D+S L+ELN+LL++TVMIRRLK +L QLP K+R + L + I K +G IN
Sbjct: 551 DYSGSSNLKELNLLLQETVMIRRLKCDVLGQLPAKKRMQVFLGI----IDKHKKIIGNIN 606
Query: 463 DSEKDATNDKTPKDSDEHDDSG--ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
D K+ S + S RL K Y G AKL E++
Sbjct: 607 DKIKEHKKMFHIAHSTDAAKSARFEAWRLIKELYHNTGTAKLPAVTEYIK---------- 656
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
++ NK+I+FA+H V+DG+ + +G+ +VRIDG T P+ RQ V +Q
Sbjct: 657 ----EMLKTKNKIIVFAYHHDVMDGIGLLLEREGVEYVRIDGMTPPQHRQELVDYYQNQP 712
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ A++G+T+ GVGL + A+ V+ EL +P ++ QAEDRAHR G V ++ A+
Sbjct: 713 NCRAAVLGLTSAGVGLTMTKAEAVIMTELYWNPGILRQAEDRAHRIGVEHEVEVFYLVAR 772
Query: 641 DTTDESHW 648
T DES W
Sbjct: 773 GTLDESIW 780
>gi|332236921|ref|XP_003267647.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Nomascus
leucogenys]
Length = 1079
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 181/517 (35%), Positives = 278/517 (53%), Gaps = 44/517 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRISTSKVTVLGYGLLTADAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ + Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNARI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN-DKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L L AAV +N S + +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPLDL-------PSAAVKELNTSFDEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E G++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTGYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQ--EIAVEGVSYLEMSD--KTDRGSEDL 693
NG+ + +Q E E +L+ ++ D SE+L
Sbjct: 469 TLNGRKEKIQAEEGDKEKWDFLQFAEAWTPDDSSEEL 505
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
>gi|327260656|ref|XP_003215150.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Anolis carolinensis]
Length = 1095
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/498 (35%), Positives = 272/498 (54%), Gaps = 42/498 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
DE + LP+ L +LPFQ +G+ F L RGGRC+IADEMGLGKT+QAIA++ + + +
Sbjct: 17 DEKLSYLPERLKKRLLPFQKKGIVFALERGGRCMIADEMGLGKTIQAIAVSYYYKNEWPL 76
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W +ELE+W+P P DI ++ + +V+V+ Y +L +
Sbjct: 77 LIVLPSSLRYPWVDELEKWIPDLSPEDIIII--QNKTDIWRVSTSKVIVLGYGLLTSDAQ 134
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ + K +L + R +LL+GTP+L RP
Sbjct: 135 TLIDTLYKQEFKVVIVDESHYMK----SRNAARSKILLPIVQNAMRAILLTGTPALGRPE 190
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++F Q+ + P G ++AK YC+ + V+ + + D L+EL+ LL VM
Sbjct: 191 ELFMQLEAVCPRKFGTWT-EYAKKYCNAR-VRFFGKKRQWDCRGASNLDELHQLLNH-VM 247
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV----GVINDSEKDATNDKTPKDSD 478
IRRLK +L QLPPK RQ I L +S A+ ++ S+ D+T +SD
Sbjct: 248 IRRLKNDVLTQLPPKIRQRIPFDLPKSAASEFNASFEEWEKLMRASDLDST------ESD 301
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
G R+ +++ IAK ++++ + + E+D K ++FAH
Sbjct: 302 FVQVMGLITRM----FKQTAIAKAGAVKDYIKM---LLENDNL----------KFLVFAH 344
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
HL +L E + E ++RIDG+ +R + V+ FQ + ++AI+ I A G GL F
Sbjct: 345 HLSMLQACTEAVIENKTRYIRIDGSVASSERINLVNQFQKDPDTRVAILSIQAAGQGLTF 404
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ R
Sbjct: 405 TAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTMDPLMWAMLNRKARVT 464
Query: 659 SSATNGKYDALQEIAVEG 676
+ NGK + LQ A+EG
Sbjct: 465 GTTLNGKKEKLQ--ALEG 480
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 113/275 (41%), Gaps = 57/275 (20%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGYRHAIQAFIN 813
S+ T RIH+Y+ PL +F P + LDN E + C ++ R I F+
Sbjct: 744 ASRNTDRIHIYT------KDGEPLNCNFIPLDIKLDNWEDLPECFQQKQN-RSLILKFVR 796
Query: 814 EWNALRPIERTKLLGKPLQL---PL---------------SVELCYLKETINHSS----- 850
EW+ L + + K++ K QL P S + KE I +S
Sbjct: 797 EWSGL-TVMKQKIIRKSGQLFSSPFLAAEEMLSKQQAKLNSTKRYTTKEDITKASVEKAG 855
Query: 851 --GGLLKGGSKRRTTP-SLEISHPLPSGAEWKKVRICSGSRKK----------------- 890
GG ++ +K+ TT ++ LP + R+ SG
Sbjct: 856 TIGGSVRMVTKKTTTTIEYQVLQLLPFHIYF---RLSSGKNDSGSILDSIQSDDVEEAHL 912
Query: 891 EKEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREE 949
K Y Q PLC CQK + + + ++ FC+ +C +++ RTS +LR +
Sbjct: 913 SKGYLQAVDNEGNPLCLSCQKPAVQVAQSPVSTAWDARFCSHNCQDDFLFRTSQGYLRRK 972
Query: 950 LFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+F IEHGVC C L +L ++ ++R+ +
Sbjct: 973 VFEIEHGVCQTCGLKAQELFLCVRDAPKDKRKSLL 1007
>gi|224056086|ref|XP_002194081.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3
[Taeniopygia guttata]
Length = 1026
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 268/497 (53%), Gaps = 34/497 (6%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E VD + LP+ L +LPFQ +G+ F L+R GRC+IADEMGLGKT+QAIAI+ + +
Sbjct: 17 EDVDPKLSFLPERLRRKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYYYKNE 76
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML-- 301
+L+V P+ LR W +E+E+W+P P DI ++ + +V ++ Y +L
Sbjct: 77 WPLLIVVPSSLRYPWVDEMEKWIPELSPDDISII--QNKTDIGGISTSKVTILGYGLLTS 134
Query: 302 --HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
L ++ Q + ++++DESH+++ T K +L + K R VLL+GTP+L
Sbjct: 135 DAQTLVDTLYRQKFKVVVIDESHYMKSRNATRS----KILLPIVQKALRAVLLTGTPALG 190
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
RP ++F QI L+P G ++AK YCD + V+ + + D LEEL+ LL +
Sbjct: 191 RPEELFMQIEALFPRRFGTWN-EYAKKYCDAR-VRFFGKRRQWDCRGASNLEELHQLLSE 248
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
+MIRRLK +L QLPPK RQ I L ++ + A +E + D+ E
Sbjct: 249 -IMIRRLKNDVLTQLPPKVRQRIPFDLPQAAAKNLNATF-----AEWEKLMRSLSSDASE 302
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
S + ++ Y+E IAK ++++ + + ++D K ++FAHH
Sbjct: 303 SHFSQVMNLITRM-YKETAIAKAGAVKDYIKM---MLDNDKL----------KFLVFAHH 348
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
L +L E + E ++RIDG+ +R V+ FQ E ++AI+ I A G GL F+
Sbjct: 349 LSMLQACTEAVIESKARYIRIDGSVPSAERIHLVNQFQKDPETRVAILSIQAAGQGLTFT 408
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A +VVF EL P + QAEDRAHR GQ S+VNI+ AK T D W LN+ +
Sbjct: 409 AATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTMDTLMWAMLNRKAKVTG 468
Query: 660 SATNGKYDALQEIAVEG 676
S NGK + +Q A EG
Sbjct: 469 STLNGKKEKMQ--AEEG 483
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 103/271 (38%), Gaps = 57/271 (21%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPE--ELDNTEHISGCLKENPGYRHAIQAFIN 813
S+ T RIHLY+ PL +F P +LDN E + +N R I F+
Sbjct: 683 ASKNTDRIHLYT------KDGEPLNHNFIPLDIQLDNWEDLPETF-QNKKNRALILRFVK 735
Query: 814 EWNAL----------------RPIERTKLLGKPLQLPLSVELCYLKETI----------- 846
EW L PI + L K + S + +E +
Sbjct: 736 EWTHLTAMKQKIVRKSGQIFCSPIRAAEELSKKQSVGSSTKRYVTREDVAAASLSKASSS 795
Query: 847 --------NHSSGGLLKGGSKRRTTPSLEIS----HPLPSG-AEWKKVRICSGSRKKEKE 893
L KG S + +T L + LP G + +C G
Sbjct: 796 GGSVRLISKEMGASLDKGASPKPSTKLLSETGNDPSTLPPGQTDAADSSLCKG------- 848
Query: 894 YTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRI 953
Y Q PLC CQ+ ++ ++ FC C E++ +R+S +LR ++F+I
Sbjct: 849 YLQALDKQGTPLCLSCQQPT-AQPPPGCPAWDTRFCCHACQEDFSIRSSQSYLRSKVFQI 907
Query: 954 EHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
EHGVC CQ + +L ++ QR++ +
Sbjct: 908 EHGVCQCCQHNAQELYLSVRDAPRSQRKQLL 938
>gi|348586025|ref|XP_003478771.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
isoform 2 [Cavia porcellus]
Length = 1073
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 180/492 (36%), Positives = 268/492 (54%), Gaps = 44/492 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+ + LP+ L +LPFQ EG+ F LRR GRC++ADEMGLGKT+QAIAIA + +
Sbjct: 23 DKQLDYLPERLRAKLLPFQKEGIIFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRL 304
L+V P+ LR W EE+E+W+P P DI+++ N + + P +V V+ Y +L
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELGPEDINVI----QNKTDVGKIPNSKVTVLGYGLLTTG 138
Query: 305 RKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+++I+ Q++ ++IVDESH+++ RT+ + +L + K +R VLL+GTP+L R
Sbjct: 139 AETLIDAVNNQNFRVVIVDESHYMK--SRTATRSNI--LLPIVQKARRAVLLTGTPALGR 194
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQ 419
P ++F QI L+P G D++K YC+ Y G+ Q D L EL+ LL
Sbjct: 195 PEELFMQIEALFPQKFGTWT-DYSKRYCNAHV--RYFGKRAQWDCRGASNLHELHKLLSD 251
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSD 478
+MIRRLK +L QLPPK RQ I L AA +N S E+ + P
Sbjct: 252 -IMIRRLKTEVLTQLPPKIRQRIPFDL-------PPAAAKELNTSFEEWEKLMRAPNPGG 303
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
G R+ +++ IAK ++++ + + ++D S K ++FAH
Sbjct: 304 SETVIGLITRI----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAH 346
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
HL +L E + E +VRIDG+ +R V+ FQ + ++AI+ I A G GL F
Sbjct: 347 HLNMLQACTEAVIENKTRYVRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTF 406
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ +
Sbjct: 407 TAASHVVFAELYWDPGHLKQAEDRAHRIGQYSSVNIHYLIANGTLDTFMWGMLNRKAQIT 466
Query: 659 SSATNGKYDALQ 670
S NG+ + LQ
Sbjct: 467 GSTLNGRKEQLQ 478
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K ++ FC+L C EE+ +R++ +LR +
Sbjct: 892 KGYLQAVNNEGNPLCLYCQRLTCQTKQQYTTSAWDSRFCSLKCQEEFWIRSNNSYLRATV 951
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C ++ +L ++ QR+ +
Sbjct: 952 FEIEHGVCQLCNINAQELFLRLRDAPKSQRKSLL 985
>gi|348586023|ref|XP_003478770.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
isoform 1 [Cavia porcellus]
Length = 1077
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 180/492 (36%), Positives = 268/492 (54%), Gaps = 44/492 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+ + LP+ L +LPFQ EG+ F LRR GRC++ADEMGLGKT+QAIAIA + +
Sbjct: 23 DKQLDYLPERLRAKLLPFQKEGIIFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRL 304
L+V P+ LR W EE+E+W+P P DI+++ N + + P +V V+ Y +L
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELGPEDINVI----QNKTDVGKIPNSKVTVLGYGLLTTG 138
Query: 305 RKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+++I+ Q++ ++IVDESH+++ RT+ + +L + K +R VLL+GTP+L R
Sbjct: 139 AETLIDAVNNQNFRVVIVDESHYMK--SRTATRSNI--LLPIVQKARRAVLLTGTPALGR 194
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQ 419
P ++F QI L+P G D++K YC+ Y G+ Q D L EL+ LL
Sbjct: 195 PEELFMQIEALFPQKFGTWT-DYSKRYCNAHV--RYFGKRAQWDCRGASNLHELHKLLSD 251
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSD 478
+MIRRLK +L QLPPK RQ I L AA +N S E+ + P
Sbjct: 252 -IMIRRLKTEVLTQLPPKIRQRIPFDL-------PPAAAKELNTSFEEWEKLMRAPNPGG 303
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
G R+ +++ IAK ++++ + + ++D S K ++FAH
Sbjct: 304 SETVIGLITRI----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAH 346
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
HL +L E + E +VRIDG+ +R V+ FQ + ++AI+ I A G GL F
Sbjct: 347 HLNMLQACTEAVIENKTRYVRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTF 406
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ +
Sbjct: 407 TAASHVVFAELYWDPGHLKQAEDRAHRIGQYSSVNIHYLIANGTLDTFMWGMLNRKAQIT 466
Query: 659 SSATNGKYDALQ 670
S NG+ + LQ
Sbjct: 467 GSTLNGRKEQLQ 478
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K ++ FC+L C EE+ +R++ +LR +
Sbjct: 896 KGYLQAVNNEGNPLCLYCQRLTCQTKQQYTTSAWDSRFCSLKCQEEFWIRSNNSYLRATV 955
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C ++ +L ++ QR+ +
Sbjct: 956 FEIEHGVCQLCNINAQELFLRLRDAPKSQRKSLL 989
>gi|428176602|gb|EKX45486.1| hypothetical protein GUITHDRAFT_42086, partial [Guillardia theta
CCMP2712]
Length = 472
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 265/481 (55%), Gaps = 43/481 (8%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +GVRF L+R GR LI DEMGLGKTLQA+A+AA + +L++CP+ LRL+WA+E
Sbjct: 20 FQRDGVRFALKRKGRVLIGDEMGLGKTLQALAVAAAYKREWPLLIICPSSLRLNWAQECS 79
Query: 264 RWLPFCL--PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDES 321
RWL P ++ +V + + V ++SY + R+ ++ + ++I DES
Sbjct: 80 RWLEGMKEEPLEVQVVMKGSDA----IKGVDVTIVSYDLATRMSDAIKASSFKVVIADES 135
Query: 322 HHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY 381
H+++ T + +A + + + R +LLSGTP+LSRP ++ Q+ L P + +K
Sbjct: 136 HYIK----TDKALRTRACMPLLRQASRAILLSGTPALSRPVELLSQLQCLQPKIFS-SKR 190
Query: 382 DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQI 441
+F + YC+ K QG+ D S L+EL++LL +VMIRRLK+ +LV+LP KRRQ
Sbjct: 191 EFQRRYCNAK-----QGRWGLDTSGASCLQELSILLSSSVMIRRLKREVLVELPAKRRQK 245
Query: 442 IRLLLKRSEIVSAKAAVGVINDSE-KDATNDKTPKDSDEHDDSGACC-----RLGKI--- 492
+ + + ++ ++ + I+ + + +++ DE + G R G +
Sbjct: 246 VFINVANKDLKKIQSIMNRIDSVDMRPSSSPPAGHAGDEKEQVGENGGERKRRRGSMLDS 305
Query: 493 ----SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+Y E G+AKL +L+ D+ K ++FAHHL+VLDG++
Sbjct: 306 LITEAYLETGLAKLPEVCSYLA--------------DLIEGGCKFLVFAHHLQVLDGIER 351
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
F+ + ++RIDG+ P R V FQ EV++ ++G+TA G GL +SA VVF E
Sbjct: 352 FLLRSSVKYIRIDGSVPPAARAERVKMFQEEEEVRVGVLGMTAAGTGLTLTSAATVVFAE 411
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
L +P +M+QAEDR HR Q VNI+ A+ T DE W ++ ++ VS A +G A
Sbjct: 412 LYWTPGVMMQAEDRVHRISQQLPVNIHYLLARGTADELVWSSIVSKVKIVSWALDGSQQA 471
Query: 669 L 669
+
Sbjct: 472 V 472
>gi|429329966|gb|AFZ81725.1| helicase family member protein [Babesia equi]
Length = 784
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 189/565 (33%), Positives = 304/565 (53%), Gaps = 68/565 (12%)
Query: 126 KACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSD 183
K YK DYN VL L+N ++E IP L S + E L D
Sbjct: 244 KCTTYKASDYNLVLKSLRNVIRDKSQIETIPNFILRTFPSFSSYAKDSKLPQKTMETLFD 303
Query: 184 EV----------VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
+ +IG+ L + PFQ EGV FG+R+ GR LI DEMGLGKTLQA
Sbjct: 304 NQSPYTKRNAPNLSSLIGE---ELYRELKPFQHEGVEFGIRKNGRVLIGDEMGLGKTLQA 360
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP-ADIHLVFGHRNN-PVHLTRFP 291
+AI+A + +++VCP+ LR W ++ RWLP + DI LV RN+ P+H
Sbjct: 361 LAISAFYSIDWPMMIVCPSSLRFQWRDQCIRWLPHLVDHGDIFLVKNGRNDIPLH----A 416
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVKRI 349
+VV+ISY +L + ++ ++++DESH++ R +KRT K ++ + KR
Sbjct: 417 KVVIISYDLL--TKNERFRHNYRVIVIDESHYLKNRLAKRT------KQIVPLIRMAKRA 468
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LLSGTP+L+ P +++ QI+ + P + +F + YC+ K Y ++ ++
Sbjct: 469 ILLSGTPALNLPSELYEQISCIIPEF--SSYNNFVERYCEKKK-NWYTNKM--EYVGSKH 523
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
EL++ L +TVMIRRLK+++L +LPPK R I + L S + S KAA+ + T
Sbjct: 524 THELHLFLVKTVMIRRLKENVLHELPPKIRSKIPIELPPSFLKSCKAALSPL------ET 577
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQEL----GIAKLSGFREWLSIHPVIAESDGAADID 525
+ KDSD ++ S+Q++ G AK G +++ + D +
Sbjct: 578 RILSDKDSDNFEEEFK-------SFQDIFRMTGEAKCKGVCQYI---------EHLIDTN 621
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
+ K +IFAHH+ V+D +++ + EKG ++RIDG+T R++ V+ FQ KIA
Sbjct: 622 I-----KFLIFAHHMIVMDSIEDKLKEKGANYIRIDGSTSLDKREAYVNLFQTDKHCKIA 676
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTD 644
++ ++A GVGL+ +++ VVF EL P M+QAEDRAHR G + +++NI+ A+++ +
Sbjct: 677 LLSLSACGVGLNLTASSTVVFAELFWVPGQMIQAEDRAHRLGTKHTSINIHYLIAENSVE 736
Query: 645 ESHWQNLNKSLRCVSSATNGKYDAL 669
E+ W+ +N+ ++S NG+ L
Sbjct: 737 ETVWKVINRKWETITSTLNGQISNL 761
>gi|351695375|gb|EHA98293.1| Zinc finger Ran-binding domain-containing protein 3 [Heterocephalus
glaber]
Length = 1077
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 184/497 (37%), Positives = 268/497 (53%), Gaps = 44/497 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
DE + LP+ L +LPFQ EG+ F LRR GRCL+ADEMGLGKT+QAIAIA + +
Sbjct: 23 DEQLDFLPEKLKAKLLPFQKEGIIFALRRDGRCLVADEMGLGKTIQAIAIAYFYREEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWIEEIEKWIPELEPEGINVI--QNKTDVGRISTSKVTVLGYGLLTTGAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T K +L + K +R VLL+GTP+L RP
Sbjct: 141 TLIDALNYQNFKVVIVDESHYMKSRTATRS----KILLPIVQKARRAVLLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G D++K YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGTWT-DYSKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
MIRRLK +L QLPPK RQ I L S AA + N E+ + P +
Sbjct: 253 MIRRLKTEVLTQLPPKIRQRIPFDLPPS------AAKELNNSFEEWEKLMRAP------N 300
Query: 482 DSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
G +G I+ +++ IAK + ++ + + ++D S K ++FAHH
Sbjct: 301 PGGIETVMGLITHIFKQTAIAKAGAVKNYIKM---MLQND----------SLKFLVFAHH 347
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
L +L E + E +VRIDG+ L +R V+ FQ + + ++AI+ I A G GL F+
Sbjct: 348 LSMLQACTEAVIENKARYVRIDGSVLSSERIHLVNQFQKNPDTRVAILSIQAAGQGLTFT 407
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A +VVF EL P + QAEDRAHR GQ +VNI+ A T D W LN+ +
Sbjct: 408 AASHVVFAELYWDPGHIKQAEDRAHRIGQCCSVNIHYLIANGTLDTFMWGMLNRKTQVTG 467
Query: 660 SATNGKYDALQEIAVEG 676
S NG+ + LQ A EG
Sbjct: 468 STLNGRKEQLQ--AEEG 482
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 107/263 (40%), Gaps = 43/263 (16%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC--LKENPGYRHAIQAF 811
S+ T RIHLY + + + +F P + LD E + LK+N R I F
Sbjct: 736 ASKNTDRIHLY------NKDGKQMNYNFIPLDIKLDLWEDLPASFQLKQN---RSLILRF 786
Query: 812 INEWNAL-----RPIERTKLLGKPLQLPL-----------SVELCYLKETINHSS----- 850
+ EWN+L R I R+ L L L S + KE + +S
Sbjct: 787 VREWNSLTAMKQRIIRRSGQLFSSPVLALEEITKEQAKQNSTKRYITKEDVAIASMNKVK 846
Query: 851 --GGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGS------RKKEKEYTQGWTIND 902
GG ++ K L I + L GA V + K Y Q
Sbjct: 847 KDGGHIRLIMKESRPQDLSIKNFLEDGAYNPSVNPHTAQADLTVKSSASKGYLQAVDNEG 906
Query: 903 EPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNC 961
LC CQ TC++K ++ FC+L C EE+ +R++ +LR +F IEHGVC C
Sbjct: 907 HSLCLHCQHPTCQTKQEYTTNTWDSWFCSLKCQEEFWIRSNNSYLRSRVFEIEHGVCQLC 966
Query: 962 QLDCHKLVKHIKPLSLEQRRKYI 984
++ +L ++ QR+ +
Sbjct: 967 NVNAQELFLRLRDAPKSQRKNLL 989
>gi|363736001|ref|XP_003641641.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Gallus gallus]
Length = 1093
Score = 279 bits (713), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 173/498 (34%), Positives = 275/498 (55%), Gaps = 36/498 (7%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E VD + LP+ L +LPFQ +G+ F L+R GRC+IADEMGLGKT+QAIAI+ +
Sbjct: 9 ENVDAELSFLPERLRKKLLPFQEKGIIFALQRSGRCMIADEMGLGKTIQAIAISYYYRRE 68
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML-- 301
+L+V P+ LR W +ELE+W+P P DI ++ ++ + ++ +V+V+ Y +L
Sbjct: 69 WPLLIVVPSSLRYPWVDELEKWIPELSPDDI-IIIQNKTDTGRIST-SKVIVLGYGLLTS 126
Query: 302 --HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
L ++ Q++ ++++DESH+++ + +L + K R +LL+GTP+L
Sbjct: 127 DAQTLVDTLYRQNFKVVVIDESHYMK----SRNAMRSNILLPIVQKATRAILLTGTPALG 182
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
RP ++F QI L+P G ++AK YCD + ++ + + D L+EL+ LL++
Sbjct: 183 RPEELFMQIEALFPRRFGTWS-EYAKKYCDAR-LRFFGKRKQWDCRGASNLKELHQLLRE 240
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN-DKTPKDSD 478
+MIRRLK +L QLPPK RQ I L ++ +AK + E+ + P DS
Sbjct: 241 -IMIRRLKNDVLTQLPPKVRQRIPFDLPQA---TAKNLSTTFAEWERLMRKLNSEPTDSH 296
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ R+ Y+E IAK ++++ + + E+D K ++FAH
Sbjct: 297 FVEIMSLITRM----YKETAIAKAGAVKDYIRM---MLENDKL----------KFLVFAH 339
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H+ +L E + E + ++RIDG+ +R V+ FQ + ++AI+ I A G GL F
Sbjct: 340 HISMLQACTEAVIENKVRYIRIDGSVPSAERIRLVNQFQKDPDTRVAILSIQAAGQGLTF 399
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A ++VF EL P + QAEDRAHR GQ S+VNI+ AK T D W LN+ +
Sbjct: 400 TAATHIVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHFLIAKGTLDPLMWAMLNRKAKVT 459
Query: 659 SSATNGKYDALQEIAVEG 676
S NGK + +Q A EG
Sbjct: 460 GSTLNGKKEKMQ--AEEG 475
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 129/322 (40%), Gaps = 65/322 (20%)
Query: 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCV 769
V + SE S+ A+ +I +K N++ E ++D + D S+ T RIHLY+
Sbjct: 702 VTQQSEISEQEAV----KIKSKENERTCGEDESD-AFLVYDGLMFCASRNTDRIHLYT-- 754
Query: 770 PGTDSRPRPLFESFRPE--ELDNTEHISGCLKENPGYRH---AIQAFINEWNAL------ 818
D P L +F P +LDN E L EN ++H I F+ EWN L
Sbjct: 755 --KDGEPLNL--NFIPLDIQLDNWED----LPENFQHKHNRSMILRFVKEWNQLTAMKQK 806
Query: 819 ----------RPIERTKLLGKPLQLPLSVELCYLKET------------------INHSS 850
PI + + K S + KE I S
Sbjct: 807 MVRKSGQLFCSPIHAAEEMSKKQSAASSTKRYVTKEDVAAASLSKASSSGGSVRLITKES 866
Query: 851 GGLLKGGSKRRTTPSLEISHPLPSG-------AEWKKVRICSGSRKKEKEYTQGWTINDE 903
LK + P L +G ++W +V S + + G
Sbjct: 867 RACLKNENASMAQPGHSTKLFLENGKTPSVLPSDWTEVESSSLPKGYLLQALDG---EGN 923
Query: 904 PLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQ 962
PLC CQ+ T + + A ++ FC+L C E++ +R+S +LR ++F IEHGVC C
Sbjct: 924 PLCLHCQQPTAQLDQSCQAHAWDTRFCSLACQEDFSVRSSQSYLRVKVFEIEHGVCQFCH 983
Query: 963 LDCHKLVKHIKPLSLEQRRKYI 984
+ +L +++ QR+K +
Sbjct: 984 QNAQELYLNVRDAPKSQRKKLL 1005
>gi|403259078|ref|XP_003922062.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Saimiri boliviensis boliviensis]
Length = 1080
Score = 278 bits (712), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 178/496 (35%), Positives = 268/496 (54%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAIA+A + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALQRNGRCMVADEMGLGKTIQAIAVAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRISTSKVTVLGYGLLTTDAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q + ++IVDESH+++ T K +L V K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQKFKVVIVDESHYMKSRNATRS----KILLPVVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L+EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLQELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKIRQRIPFDL-------PSAAAKELNTSFEEWKKLMRTPNSRGME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 885 SGSRKKEKEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSG 943
+G K Y Q PLC CQ+ TC++K A ++ FC+L C EE+ +R++
Sbjct: 892 TGKPSTSKGYLQAVDNEGNPLCLRCQQPTCQTKQVCKANAWDSRFCSLKCQEEFWIRSNN 951
Query: 944 RFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+LR ++F EHGVC C ++ +L ++ QR+ +
Sbjct: 952 SYLRAKVFETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 992
>gi|124430705|ref|NP_081954.1| DNA annealing helicase and endonuclease ZRANB3 [Mus musculus]
gi|81885066|sp|Q6NZP1.1|ZRAB3_MOUSE RecName: Full=DNA annealing helicase and endonuclease ZRANB3;
AltName: Full=Annealing helicase 2; Short=AH2; AltName:
Full=Zinc finger Ran-binding domain-containing protein
3; Includes: RecName: Full=DNA annealing helicase
ZRANB3; Includes: RecName: Full=Endonuclease ZRANB3
gi|42406402|gb|AAH66035.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
Length = 1069
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 413 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 472
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 473 RKEKLQ 478
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 148/361 (40%), Gaps = 80/361 (22%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 649 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 695
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 696 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 749
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 750 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 805
Query: 836 SVELC----------------YL-KETINHSSGGLLK--GGSKRRTTPSLEISHPLPSGA 876
S L Y+ KE + +S +K GG R T + +
Sbjct: 806 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLIT-----KESMTQDS 860
Query: 877 EWKKV--------RICSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEY 923
KK+ C E K Y Q PLC CQ TC+ + A
Sbjct: 861 SLKKIDSACVPSLNPCPADLTVEPSPSKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASA 920
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
++ FC+L C EE+ +R++ +LR ++F EHGVC +C +D +L ++ R+
Sbjct: 921 WDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQHCGVDAQELFLRMRDAPKSHRKSL 980
Query: 984 I 984
+
Sbjct: 981 L 981
>gi|148707811|gb|EDL39758.1| mCG13937, isoform CRA_b [Mus musculus]
Length = 1097
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 57 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 116
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 117 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 172
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 173 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 228
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 229 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 284
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 285 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 337
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 338 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 380
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 381 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 440
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 441 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 500
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 501 RKEKLQ 506
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 80/361 (22%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 677 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 723
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 724 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 777
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 778 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 833
Query: 836 SVELC----------------YL-KETINHSSGGLLK--GGSKRRTTPSLEISHPLPSGA 876
S L Y+ KE + +S +K GG R T + +
Sbjct: 834 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLIT-----KESMTQDS 888
Query: 877 EWKKV--------RICSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEY 923
KK+ C E K Y Q PLC CQ TC+ + A
Sbjct: 889 SLKKIDSACVPSLNPCPADLTVEPSPSKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASA 948
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
++ FC+L C EE+ +R++ +LR ++F EHGVC C +D +L ++ R+
Sbjct: 949 WDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQRCGVDAQELFLRMRDAPKSHRKSL 1008
Query: 984 I 984
+
Sbjct: 1009 L 1009
>gi|431894787|gb|ELK04580.1| Zinc finger Ran-binding domain-containing protein 3 [Pteropus
alecto]
Length = 1068
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/490 (36%), Positives = 260/490 (53%), Gaps = 42/490 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L + +LPFQ +G+ F LRR GRC+IADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLREKLLPFQKDGITFALRRNGRCMIADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P +I+++ V +V V+ Y +L +++++
Sbjct: 89 SLRYPWTEEIEKWIPELGPEEINVI--QNKTDVGRISISKVTVLGYGLLTTDAEALVDAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T K +L + K KR +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFNVVIVDESHYMKSRNATRS----KILLPIVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G D+AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-DYAKRYCNAHI--RYFGKRSQWDCRGASNLSELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L AA +N S E+ + P G
Sbjct: 259 TEVLTQLPPKIRQRIPFDL-------PSAAAKELNTSFEEWEKLMRAPNPGATETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
+ +++ IAK ++++ + ++ S K ++FAHHL +L
Sbjct: 312 THI----FKQTAIAKAGAVKDYIKMM-------------LHNDSLKFLVFAHHLNMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E +VRIDG+ +R V+ FQ E ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIENKTRYVRIDGSVPSSERIYLVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTIMWGMLNRKAQVTGSTLNGRK 474
Query: 667 DALQEIAVEG 676
+ LQ A EG
Sbjct: 475 EQLQ--AEEG 482
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K + FC+L C EE+ R++ +LR ++
Sbjct: 887 KGYLQAVNNEGNPLCLHCQQPTCQTKQECKVNAWNSRFCSLKCQEEFWTRSNNSYLRAKV 946
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C ++ +L ++ QR+ +
Sbjct: 947 FEIEHGVCQLCNMNAQELFLRLRDAPKSQRKNLL 980
>gi|242046444|ref|XP_002461093.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
gi|241924470|gb|EER97614.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
Length = 756
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 187/585 (31%), Positives = 297/585 (50%), Gaps = 74/585 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P +L ++PFQ EG+ F L+ GGR LIADEMGLGKT+QAIA+A+C A +LV+ P
Sbjct: 207 RIPPNLESQLMPFQREGIGFVLQHGGRALIADEMGLGKTVQAIAVASCLRDAWPVLVISP 266
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV---------------VI 296
+ LRL WA ++ WL + DI +V H H F RVV VI
Sbjct: 267 SSLRLHWATAIQSWLNIPM-EDILVVLPHTGGS-HKAGF-RVVYSNTKGDFHLDGVFNVI 323
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +++ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP
Sbjct: 324 SYDVVPKIQSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTP 379
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F Q+ L+P + K ++ YC +G F + EEL+ L
Sbjct: 380 ALSRPIELFTQMQALYPTVY-KNVNEYGNRYC--------KGGFFGLYQGASNHEELHNL 430
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K TVMIRRLK+ +L QLP KRRQ + L L ++ + +A +T K
Sbjct: 431 MKATVMIRRLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKI 480
Query: 477 SDEHDDSGACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
E DS + +YQ + +AK+ ++L + E+
Sbjct: 481 KIESSDSKETIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLG---TMIEA---------- 527
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K +IFAHH ++D +++ +S+K + ++IDG T RQ+ V SFQ ++++K A++
Sbjct: 528 -GCKFLIFAHHQPMIDAIEQHLSKKKVKCIKIDGKTPLTTRQTLVTSFQENDDIKAAVLS 586
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
I AGG G+ ++A V+F EL +P ++QAEDRAHR GQ S+VN+Y A T D+ W
Sbjct: 587 IKAGGYGITLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNVYYLLANGTADDLMW 646
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE-- 706
++ L + +G+ L VS ++ + + TLD + S Q+
Sbjct: 647 DSVQGKLENLGQMLDGQEKTLD------VSQIDSRPSPSKSKQQKTLDGLGPSPSKQQKT 700
Query: 707 ---LMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTE 748
+K P +S + + + + K D L+ T S E
Sbjct: 701 LDGFLKRPNTSTSMELDRLGPSPSKQQKTLDGFLKRPNTSTSMEE 745
>gi|356564685|ref|XP_003550580.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Glycine max]
Length = 751
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 188/565 (33%), Positives = 290/565 (51%), Gaps = 65/565 (11%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EGVRF L+ GGR L+ADEMGLGKTLQAIA+A+C +L++ P
Sbjct: 227 KIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAP 286
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV--------------VIS 297
+ LRL WA +++WL +P+ L+ ++ + F V +IS
Sbjct: 287 SSLRLQWASMIQQWL--NIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIIS 344
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
Y ++ +L+ ++ D+ ++I DESH ++ +KRT+ A L V K + +LLSGT
Sbjct: 345 YDLVPKLQNMLMTHDFKVVIADESHFLKNAQAKRTT------ASLPVIKKAQYALLLSGT 398
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P+LSRP ++F Q+ L+P + + +++ YC +G +F + EEL+
Sbjct: 399 PALSRPIELFKQLEALYPDVY-RNVHEYGNRYC--------KGGVFGVYQGASNHEELHN 449
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
L+K TVMIRRLK+ +L QLP KRRQ + L L+ ++ K + + E K K
Sbjct: 450 LIKATVMIRRLKKDVLSQLPVKRRQQVFLDLENKDM---KQINALFQELEMVKAKIKAAK 506
Query: 476 DSDEHDDSGACCR--LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
+E + + + KI Y + AK+ +++ V K
Sbjct: 507 SQEEAESLKFAQKNLINKI-YTDSAEAKIPSVLDYIGT--------------VIEAGCKF 551
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+IFAHH ++D + EF+ +K +G +RIDG T RQ V FQ + +K A++ I AGG
Sbjct: 552 LIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGG 611
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W +
Sbjct: 612 VGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQS 671
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQ-VASSDQFQELMKVPE 712
L + +G + L+ + S + S+ T+DQ V SD L+ P
Sbjct: 672 KLENLGQMLDGHENVLE---------VSASLPVNSPSKQKTIDQYVRKSDNMGSLVSSPS 722
Query: 713 SSEASD--FRAINTNDEITAKMNDK 735
+ D R + D + + N K
Sbjct: 723 KQKTLDQFVRRCDNTDRLEYEPNPK 747
>gi|148707810|gb|EDL39757.1| mCG13937, isoform CRA_a [Mus musculus]
Length = 1073
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 33 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 92
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 93 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 148
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 149 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 204
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 205 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 260
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 261 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 313
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 314 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 356
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 357 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 416
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 417 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 476
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 477 RKEKLQ 482
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 80/361 (22%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 653 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 699
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 700 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 753
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 754 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 809
Query: 836 SVELC----------------YL-KETINHSSGGLLK--GGSKRRTTPSLEISHPLPSGA 876
S L Y+ KE + +S +K GG R T + +
Sbjct: 810 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLIT-----KESMTQDS 864
Query: 877 EWKKV--------RICSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEY 923
KK+ C E K Y Q PLC CQ TC+ + A
Sbjct: 865 SLKKIDSACVPSLNPCPADLTVEPSPSKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASA 924
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
++ FC+L C EE+ +R++ +LR ++F EHGVC C +D +L ++ R+
Sbjct: 925 WDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQRCGVDAQELFLRMRDAPKSHRKSL 984
Query: 984 I 984
+
Sbjct: 985 L 985
>gi|109730809|gb|AAI17923.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
gi|109731403|gb|AAI17922.1| Zranb3 protein [Mus musculus]
Length = 1069
Score = 277 bits (708), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 413 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 472
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 473 RKEKLQ 478
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 82/346 (23%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 649 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 695
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 696 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 749
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 750 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 805
Query: 836 SVELC----------------YL------KETINH--SSGGLLKGGSKRRTTPSLEI--- 868
S L Y+ K ++N S GG ++ +K T +
Sbjct: 806 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLITKESMTQDSSLKKL 865
Query: 869 -SHPLPSGAEWKKVRICSGSRKKEKEYTQGW--TINDE--PLCKLCQK-TCKSKNAKNAE 922
S +PS + C E T+G+ ++ E PLC CQ TC+ + A
Sbjct: 866 DSACVPS------LNPCPADLTVEPSPTKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKAS 919
Query: 923 YFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKL 968
++ FC+L C EE+ +R++ +LR ++F EHGVC C +D +L
Sbjct: 920 AWDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQRCGVDAQEL 965
>gi|149730550|ref|XP_001489638.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Equus caballus]
Length = 1072
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 179/489 (36%), Positives = 263/489 (53%), Gaps = 40/489 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F L R GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGITFALSRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EELE+W+P P +I+++ V +V V+ Y +L +++I+
Sbjct: 89 SLRYPWTEELEKWIPELGPEEINVI--QNKTDVGSISTSKVTVLGYGLLTTDAETLIDTL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ + + +L V K KR +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFQVVIVDESHYMK----SRNAARSRILLPVVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G D+AK YC+ + Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-DYAKRYCNARI--RYFGKRRQWDCRGASNLNELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK RQ I L A AA + + E+ + P G
Sbjct: 259 TEVLTQLPPKIRQRIPFDL------PAAAAKELNSSFEEWEKLLRAPNSGATETVMGLIT 312
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 313 RI----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQACT 355
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
E + E ++RIDG+ +R V+ FQ E ++AI+ I A G GL F++A +VVF
Sbjct: 356 EAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVFA 415
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL P + QAEDRAHR GQ S+VNI+ AK T D W LN+ + S NG+ +
Sbjct: 416 ELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIAKGTLDTLMWGMLNRKAQVTGSTLNGRKE 475
Query: 668 ALQEIAVEG 676
LQ A EG
Sbjct: 476 QLQ--AEEG 482
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC+++ A ++ FC+L C EE+ +R+ +LR ++
Sbjct: 891 KGYLQAVDNEGNPLCLRCQQPTCQTRQECKANAWDSRFCSLRCQEEFWIRSHNSYLRAKV 950
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 951 FEIEHGVCQLCNLNAQELFLRLRDAPKGQRKNLL 984
>gi|355751623|gb|EHH55878.1| hypothetical protein EGM_05169 [Macaca fascicularis]
Length = 1078
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 267/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
++++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI IA + +
Sbjct: 23 EKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGIAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRISTSKVTVLGYGLLTADAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L V K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPVVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ + Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNARI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGGVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 897 KGYLQAVDNEGNPLCLHCQQPTCQTKQACKVNAWDSRFCSLKCQEEFWIRSNNSYLRAKV 956
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F E GVC C ++ +L ++ QR+K +
Sbjct: 957 FETERGVCQLCNVNAQELFLRLRDAPKSQRKKLL 990
>gi|296204912|ref|XP_002749531.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Callithrix jacchus]
Length = 1080
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 175/490 (35%), Positives = 265/490 (54%), Gaps = 40/490 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAIA+A + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALQRNGRCMVADEMGLGKTIQAIAVAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRISTSKVTVLGYGLLTTDAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q + ++IVDESH+++ T K +L V K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQKFKVVIVDESHYMKSRNATRS----KILLPVVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G + D+AK YC+ Y G+ Q D L+EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFG-SWTDYAKRYCNAHI--RYFGKRPQWDCRGASNLKELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ + P
Sbjct: 253 MIRRLKTEVLTQLPPKIRQRIPFDL-------PSAAAKELNTSFEEWKKLMRMPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E I ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKIRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQ 670
NG+ + +Q
Sbjct: 469 TLNGRKEKIQ 478
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ T ++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 899 KGYLQAVDNEGNPLCLHCQQPTWQTKQACQANAWDSRFCSLKCQEEFWIRSNNSYLRAKV 958
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 959 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 992
>gi|117646930|emb|CAL37580.1| hypothetical protein [synthetic construct]
Length = 1077
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 265/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 896 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 955
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 956 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 989
>gi|26351357|dbj|BAC39315.1| unnamed protein product [Mus musculus]
Length = 616
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 265/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMKS--RTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 413 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 472
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 473 RKEKLQ 478
>gi|62860046|ref|NP_115519.2| DNA annealing helicase and endonuclease ZRANB3 [Homo sapiens]
gi|74741477|sp|Q5FWF4.2|ZRAB3_HUMAN RecName: Full=DNA annealing helicase and endonuclease ZRANB3;
AltName: Full=Annealing helicase 2; Short=AH2; AltName:
Full=Zinc finger Ran-binding domain-containing protein
3; Includes: RecName: Full=DNA annealing helicase
ZRANB3; Includes: RecName: Full=Endonuclease ZRANB3
gi|66840172|gb|AAH89429.2| Zinc finger, RAN-binding domain containing 3 [Homo sapiens]
Length = 1079
Score = 276 bits (706), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 265/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
>gi|117646914|emb|CAL37572.1| hypothetical protein [synthetic construct]
Length = 1077
Score = 276 bits (706), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 265/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D ++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 896 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 955
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 956 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 989
>gi|426221165|ref|XP_004004781.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Ovis
aries]
Length = 1077
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 180/497 (36%), Positives = 266/497 (53%), Gaps = 46/497 (9%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E + LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAI IA + +L
Sbjct: 24 EQLDFLPDKLRAKLLPFQKDGITFALRRDGRCMVADEMGLGKTVQAIGIAYFYKEEWPVL 83
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLR 305
VV P+ LR W EE+E+W+P P +I+++ N + + R +V V+ Y +L
Sbjct: 84 VVVPSSLRYPWTEEIEKWIPELSPEEINVI----QNKIDVGRISTSKVTVLGYGLLTADA 139
Query: 306 KSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+++I+ Q++ ++IVDESH+++ T + +L + K KR +LL+GTP+L RP
Sbjct: 140 ETLIDALNNQNFKVVIVDESHYMKSRSATRS----RILLPIVQKAKRAILLTGTPALGRP 195
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQT 420
++F QI L+P G ++AK YC+ Y G+ Q D L EL+ LL
Sbjct: 196 EELFMQIEALFPQKFGTWT-EYAKRYCNAHV--RYFGKRPQWDCRGASNLNELHQLLSD- 251
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDE 479
+MIRRLK +L QLPPK RQ I L AA +N S E+ + P
Sbjct: 252 IMIRRLKAEVLTQLPPKIRQRIPFDL-------PSAAAKELNSSFEEWEKLMRAPYSGAT 304
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
G R+ +++ IAK ++++ + + ++D S K ++FAHH
Sbjct: 305 ETVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHH 347
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
L +L E + E ++RIDG+ +R V+ FQ E ++AI+ I A G GL F+
Sbjct: 348 LSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFT 407
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ +
Sbjct: 408 AATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTG 467
Query: 660 SATNGKYDALQEIAVEG 676
S NG+ + LQ A EG
Sbjct: 468 STLNGRKEKLQ--AEEG 482
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 896 KGYLQAVDNEGNPLCLRCQQPTCQTKQECKADAWDSRFCSLKCQEEFWIRSNNSYLRAKV 955
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 956 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKSLL 989
>gi|332814492|ref|XP_515805.3| PREDICTED: zinc finger Ran-binding domain-containing protein 3 [Pan
troglodytes]
gi|410211198|gb|JAA02818.1| zinc finger, RAN-binding domain containing 3 [Pan troglodytes]
gi|410265392|gb|JAA20662.1| zinc finger, RAN-binding domain containing 3 [Pan troglodytes]
gi|410294334|gb|JAA25767.1| zinc finger, RAN-binding domain containing 3 [Pan troglodytes]
Length = 1079
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 266/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKADVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
>gi|397504563|ref|XP_003822857.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
domain-containing protein 3 [Pan paniscus]
Length = 1079
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 266/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-I 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDILMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
>gi|363736302|ref|XP_422070.3| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 [Gallus
gallus]
Length = 966
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 172/533 (32%), Positives = 288/533 (54%), Gaps = 52/533 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ ++ +EVE +P V++ + I + + VVD
Sbjct: 399 FLLEDYPKLMKVFQSLVSVEVEPLPGT---VIQAFAAQIQSSTSQKMDFPDVDLSVVDSK 455
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
I + ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 456 I-------VTSLMPFQREGVNFAILKNGRLLLADDMGLGKTVQAICIAAYYQKEWPLLVV 508
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P +++ +++ LT + +IS+ +L ++ K +
Sbjct: 509 TPSSVRFTWAEAFHRWLPSLRPGSTNVIVTSKDS---LTA-SLINIISFDLLSKMDKQL- 563
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH+++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 564 KSTFQVVIIDESHYLKNIKTA----RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQIA 619
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ PG + + FA YCD K + G+ D+S L EL +LL++++MIRRLK
Sbjct: 620 AVQPGFFPQF-HTFALRYCDAKKMPWGW------DYSGSSNLAELKILLEESIMIRRLKS 672
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R+++ + E ++AK + +++K A ++ + E
Sbjct: 673 DVLSQLPAKQRKMVVVA---PEGINAKTKAMLAAEAKKMAKGYESKQQEKEA-------- 721
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ Y AK IH VI + D+ + NK ++FAHH VLD + E
Sbjct: 722 -LLLFYNRTAEAK---------IHSVI---EYILDL-LESGKNKFLVFAHHKVVLDAIVE 767
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +K ++RIDG+T +RQS FQ S + +A++ +TA +GL S+A VVF E
Sbjct: 768 ELEKKRFDYIRIDGSTSSAERQSLCQKFQFSEKQAVAVLSLTAANMGLTLSAADLVVFAE 827
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
L +P +++QAEDRAHR GQTS+VN++ A+ T D+ W + + ++ + A
Sbjct: 828 LFWNPGVLIQAEDRAHRIGQTSSVNVHYLVARGTADDFLWPMIQEKIKVLGEA 880
>gi|293352708|ref|XP_002728046.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Rattus norvegicus]
Length = 1069
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 264/484 (54%), Gaps = 40/484 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRRGGRC++ADEMGLGKT+QAIAI+ + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGIVFALRRGGRCMVADEMGLGKTIQAIAISYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EELE+W+P P +I+++ + T RV V+ Y +L ++++E
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVITNKTDTGRIATS--RVTVLGYGLLTTDAETLLEAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F QI
Sbjct: 147 DRQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKAQRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQRFG-TWVEYAKRYCNAHI--RYFGKRRQWDCRGASNLSELHQLLND-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L A A V +N S E+ + P G
Sbjct: 259 SEVLSQLPPKVRQRIPFDL-------APATVKELNASFEEWQKLMRAPDAGAMETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIESKARYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELFWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRK 474
Query: 667 DALQ 670
+ LQ
Sbjct: 475 EKLQ 478
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 147/360 (40%), Gaps = 62/360 (17%)
Query: 676 GVSYLEMSD-----------KTDRGSEDLTLDQVASSDQFQ-ELMKVPESSEASDFRAIN 723
G+ Y EM + + D E+ Q ++S Q L V SE + +
Sbjct: 633 GLPYCEMCESPQGRAAGLNHRQDNNKEEKEESQKSTSKNDQARLHCVKPCSEQPEVERLA 692
Query: 724 TNDEITAKMNDKL-------LEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRP 776
N E T+K K L + +P + S+ T RIHLY+
Sbjct: 693 RNKEETSKGEGKTDLPSIPTLGQLSNSDTPPVCETFMFCASKNTDRIHLYT------KDG 746
Query: 777 RPLFESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNAL-----RPIERTKLL 827
+P+ +F P + LD E + LK+N R I F+ EW+ L R I ++ L
Sbjct: 747 KPMNCNFIPLDIKLDLWEDLPAIFQLKQN---RSLILRFVREWSGLTAMKQRVIRKSGQL 803
Query: 828 GKPLQLPL-----------SVELCYLKETINHSSGGLLK--GGSKRRTTPSLEISHPLPS 874
+ L L S KE + +S +K GG R T +P S
Sbjct: 804 FRSPVLALEEITKQQAKESSTRRYITKEDVATASMNKVKNEGGHIRLITKGSLTQNP--S 861
Query: 875 GAEWKKVRICS-----GSRKKEKEYTQGW--TINDE--PLCKLCQK-TCKSKNAKNAEYF 924
+ + R+ S E +QG+ ++ E PLC CQ TC+ + A +
Sbjct: 862 TKKPDRARVPSPNPGPSGHTAEPSPSQGYLQAVDKEGRPLCLRCQHPTCQPEQGSKASAW 921
Query: 925 EDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+ FC+L+C EE+ +R++ +LR ++F EHGVC C ++ +L ++ QR+ +
Sbjct: 922 DSRFCSLNCQEEFWIRSNNSYLRAQVFATEHGVCQLCGVNAQELFLRMRDAPKSQRKNLL 981
>gi|149058725|gb|EDM09882.1| rCG46237 [Rattus norvegicus]
Length = 716
Score = 275 bits (704), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 264/484 (54%), Gaps = 40/484 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRRGGRC++ADEMGLGKT+QAIAI+ + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGIVFALRRGGRCMVADEMGLGKTIQAIAISYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EELE+W+P P +I+++ + T RV V+ Y +L ++++E
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVITNKTDTGRIATS--RVTVLGYGLLTTDAETLLEAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F QI
Sbjct: 147 DRQNFRVVIVDESHYMKS--RTAA--RSKILLPMVQKAQRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQRFG-TWVEYAKRYCNAHI--RYFGKRRQWDCRGASNLSELHQLLND-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L A A V +N S E+ + P G
Sbjct: 259 SEVLSQLPPKVRQRIPFDL-------APATVKELNASFEEWQKLMRAPDAGAMETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIESKARYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELFWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRK 474
Query: 667 DALQ 670
+ LQ
Sbjct: 475 EKLQ 478
>gi|410334213|gb|JAA36053.1| zinc finger, RAN-binding domain containing 3 [Pan troglodytes]
Length = 1079
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 266/496 (53%), Gaps = 42/496 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L K
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKADVRRMSTSKVTVLGYGLLTADAK 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTV 421
++F QI L+P G+ D+AK YC+ Y G+ Q D L EL+ LL +
Sbjct: 197 ELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-M 252
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 305
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 348
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 349 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 408
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 468
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 469 TLNGRKEKIQ--AEEG 482
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 898 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 957
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 958 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 991
>gi|293341309|ref|XP_002724934.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Rattus norvegicus]
Length = 1037
Score = 275 bits (703), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 264/484 (54%), Gaps = 40/484 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRRGGRC++ADEMGLGKT+QAIAI+ + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGIVFALRRGGRCMVADEMGLGKTIQAIAISYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EELE+W+P P +I+++ + T RV V+ Y +L ++++E
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVITNKTDTGRIATS--RVTVLGYGLLTTDAETLLEAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F QI
Sbjct: 147 DRQNFRVVIVDESHYMKS--RTAA--RSKILLPMVQKAQRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQRFG-TWVEYAKRYCNAHI--RYFGKRRQWDCRGASNLSELHQLLND-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L A A V +N S E+ + P G
Sbjct: 259 SEVLSQLPPKVRQRIPFDL-------APATVKELNASFEEWQKLMRAPDAGAMETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIESKARYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELFWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRK 474
Query: 667 DALQ 670
+ LQ
Sbjct: 475 EKLQ 478
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 894 YTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFR 952
Y Q PLC CQ TC+ + A ++ FC+L+C EE+ +R++ +LR ++F
Sbjct: 858 YLQAVDKEGRPLCLRCQHPTCQPEQGSKASAWDSRFCSLNCQEEFWIRSNNSYLRAQVFA 917
Query: 953 IEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
EHGVC C ++ +L ++ QR+ +
Sbjct: 918 TEHGVCQLCGVNAQELFLRMRDAPKSQRKNLL 949
>gi|115473589|ref|NP_001060393.1| Os07g0636200 [Oryza sativa Japonica Group]
gi|50508331|dbj|BAD30182.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin a-like [Oryza sativa Japonica Group]
gi|113611929|dbj|BAF22307.1| Os07g0636200 [Oryza sativa Japonica Group]
gi|215697224|dbj|BAG91218.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 747
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 264/499 (52%), Gaps = 51/499 (10%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++ GK+P + ++PFQ EGVRF L+ G R LIADEMGLGKTLQAIA+A+C A +L
Sbjct: 243 DLYGKIPTDVESKLMPFQREGVRFALQHGARTLIADEMGLGKTLQAIAVASCLHDAWPVL 302
Query: 248 VVCPAILRLSWAEELERWLPF-------CLP-------ADIHLVFGHRNNPVHLTRFPRV 293
V+ P+ LRL WA ++ WL LP A LV+ + +L
Sbjct: 303 VISPSSLRLHWASMIQHWLNIPTEDILVVLPQTGGSNKAGYRLVYSNTKGDFNLDGV--F 360
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VISY ++ +++ +++ D+ ++I DESH ++ ++ + L V K K +VLLS
Sbjct: 361 NVISYDVVPKIKDMLLDLDFKIVIADESHFLK----NAQAKRTMHSLPVLQKAKYVVLLS 416
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP+LSRP ++F Q+ L+P + K ++ YC +G F + EEL
Sbjct: 417 GTPALSRPIELFTQLQALYPTVY-KNVNEYGNRYC--------KGGFFGLYQGASNHEEL 467
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ L+K TVMIRRLK+ +L QLP KRRQ L L E+ +A E + K
Sbjct: 468 HNLMKATVMIRRLKKDVLSQLPVKRRQQAFLDLSEKEMRHIRALF-----HELETVKIKI 522
Query: 474 PK-DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
DS E DS + I+ Y + AK+ ++L I E++
Sbjct: 523 QSCDSQETMDSLKFAQKNLINKIYNDSAEAKIPAVLDYLG---TIIEAEC---------- 569
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K +IFAHH +L+ + + + +K + +RIDG T RQ+ V FQ +++K A++ I
Sbjct: 570 -KFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTDFQNKDDIKAAVLSIK 628
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGGVGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W
Sbjct: 629 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDV 688
Query: 651 LNKSLRCVSSATNGKYDAL 669
+ L + +G+ L
Sbjct: 689 VQGKLENLGQMLDGQEKTL 707
>gi|12855912|dbj|BAB30499.1| unnamed protein product [Mus musculus]
Length = 530
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 180/486 (37%), Positives = 266/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 33 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 92
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 93 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 148
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 149 ALNTQNFRVVIVDESHYMKS--RTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 204
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q +G L EL+ LL +MIRR
Sbjct: 205 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 260
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 261 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 313
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 314 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 356
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 357 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 416
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG
Sbjct: 417 VFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 476
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 477 RKEKLQ 482
>gi|345784223|ref|XP_533335.3| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Canis lupus familiaris]
Length = 1072
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 175/489 (35%), Positives = 261/489 (53%), Gaps = 40/489 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIA+A + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGIAFALRRDGRCMVADEMGLGKTIQAIAVAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P DI+++ V +V ++ Y +L +++I+
Sbjct: 89 SLRYPWTEEIEKWIPELGPEDINVI--QNKTDVGRISTSKVTILGYGLLTTDAETLIDVL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T K +L + K KR +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFKVVIVDESHYMKSRNATRS----KILLPIVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L+P G ++AK YC+ ++ + + D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-EYAKRYCNAH-IRFFGRRPQWDCRGASNLNELHQLLSD-IMIRRLKN 259
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK RQ I L AA +N S E+ K P G
Sbjct: 260 DVLTQLPPKVRQRIPFDL-------PSAAAKELNSSFEEWEKLMKAPNSGATKTVMGLIT 312
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 313 RM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQACT 355
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A VVF
Sbjct: 356 EAVIESKTRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATYVVFA 415
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+ +
Sbjct: 416 ELYWDPGHIKQAEDRAHRIGQCSSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKE 475
Query: 668 ALQEIAVEG 676
LQ A EG
Sbjct: 476 QLQ--AEEG 482
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 139/340 (40%), Gaps = 52/340 (15%)
Query: 684 DKTDRGSEDLTLDQVASSDQFQELMKVPE----SSEASDFRAINTNDEITAKMNDKLLEE 739
+K D +D + + +SSD ++++ PE + + I D +T + +D+ L+
Sbjct: 658 NKKDDPQKDTSKNIWSSSDCEKQVLASPEPNPLAESKEEISEIKREDGLTPQPSDEQLKS 717
Query: 740 SKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC 797
S D+ P D SQ T RIHLY+ + +F P + LD E +
Sbjct: 718 S--DNLPV-YDTLMFCASQNTDRIHLYT------KEGNQMNCNFIPLDIKLDLWEDLPAS 768
Query: 798 --LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVELCYLKETINHSSGGLLK 855
LK+N R I F+ EW++L +++ K++ K +L S L + T S K
Sbjct: 769 FQLKQN---RSLILRFVREWSSLTAMKQ-KIIRKSGRLFCSPILALEEITKQQSKQNTTK 824
Query: 856 GGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKE------------------------ 891
+ + G + + SG R
Sbjct: 825 RYITKEDVAVASLDKVKKDGGHVRLITKESGPRDPSTQKFLDDGVCVPFLNPCIAQADLT 884
Query: 892 ------KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGR 944
K Y Q PLC CQ+ TC++K ++ FC++ C EE+ +R++
Sbjct: 885 VKPSISKGYLQAVDNEGNPLCLRCQQPTCQTKQECKVNAWDSRFCSVKCQEEFWIRSNNN 944
Query: 945 FLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+LR ++F IEHGVC C ++ +L ++ QR+ +
Sbjct: 945 YLRAKVFEIEHGVCQLCNVNAQELFLCLRDAPKSQRKNLL 984
>gi|26350683|dbj|BAC38978.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 179/486 (36%), Positives = 264/486 (54%), Gaps = 44/486 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMK--SRTAA--RSKILLPMVQKARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL P + QAEDRAHR Q S+VNI+ A T D W LN+ + S NG
Sbjct: 413 VFAELYWDPGHIKQAEDRAHRIRQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNG 472
Query: 665 KYDALQ 670
+ + LQ
Sbjct: 473 RKEKLQ 478
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 148/361 (40%), Gaps = 80/361 (22%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 649 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 695
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 696 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 749
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 750 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 805
Query: 836 SVELC----------------YL-KETINHSSGGLLK--GGSKRRTTPSLEISHPLPSGA 876
S L Y+ KE + +S +K GG R T + +
Sbjct: 806 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLIT-----KESMTQDS 860
Query: 877 EWKKV--------RICSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEY 923
KK+ C E K Y Q PLC CQ TC+ + A
Sbjct: 861 SLKKIDSACVPSLNPCPADLTVEPSPSKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASA 920
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
++ FC+L C EE+ +R++ +LR ++F EHGVC +C +D +L ++ R+
Sbjct: 921 WDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQHCGVDAQELFLRMRDAPKSHRKSL 980
Query: 984 I 984
+
Sbjct: 981 L 981
>gi|145207323|gb|AAH78216.2| Zranb3 protein [Danio rerio]
Length = 541
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 263/483 (54%), Gaps = 38/483 (7%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP+ L + ++PFQ EGV F L R GRC+IADEMGLGKT+QAI++A F +L+V P+
Sbjct: 26 LPQKLREKLMPFQREGVCFALSRNGRCMIADEMGLGKTIQAISVAYIFKQEWPLLIVVPS 85
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
L+ W EELE+W+P P DI+LV + T +V ++ Y +L ++++E
Sbjct: 86 SLKYPWIEELEKWIPELDPRDINLVESKTDTMSIST--SKVTILGYGLLTTDARALLEAL 143
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q +A+++VDESH+++ + K ++ + KR +LL+GTP+L RP ++F QI
Sbjct: 144 NKQRFAVVLVDESHYLK----SRNAARSKILVPIIQSAKRAILLTGTPALGRPEELFMQI 199
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLK 427
+ L+P G D+A YC+ Y G Q +G L+EL+ L + +MIRRLK
Sbjct: 200 DALYPRRFGTWS-DYANKYCNAHY--RYFGARRQWDCRGASHLDELHKRLSE-IMIRRLK 255
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK RQ I L + +AK A EK + S+ +
Sbjct: 256 NQVLTQLPPKIRQRIPFDLPKD---AAKEASASFEQWEKLMS-------SESENQFVEVM 305
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
L Y++ +AK ++++ + + ES+ K ++FAHHL +L
Sbjct: 306 SLITHMYKQTAVAKAGAVKDYIKM---MLESEQL----------KFLVFAHHLSMLQACT 352
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
E + E G++RIDG+ +R VH FQ + ++A++ I A G GL F++A +VVF
Sbjct: 353 EAVIEAKAGYIRIDGSVPSAERIQLVHRFQNDPDTRVAVLSIQAAGQGLTFTAASHVVFA 412
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL +P + QAEDRAHR GQT+ V+I+ AK T D W LN+ SA NGK +
Sbjct: 413 ELYWNPGHIKQAEDRAHRIGQTATVHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKKE 472
Query: 668 ALQ 670
L+
Sbjct: 473 YLK 475
>gi|440903001|gb|ELR53718.1| Zinc finger Ran-binding domain-containing protein 3 [Bos grunniens
mutus]
Length = 1070
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/490 (36%), Positives = 261/490 (53%), Gaps = 42/490 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAI IA + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGITFALRRDGRCMVADEMGLGKTVQAIGIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P +I+++ V +V V+ Y +L +++I+
Sbjct: 89 SLRYPWTEEIEKWIPELSPEEINVI--QNKTDVGRISTSKVTVLGYGLLTTDAETLIDAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T + +L V K KR +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFKVVIVDESHYMKSRSATRS----RILLPVVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-EYAKRYCNAHV--RYFGRRSQWDCRGASNLNELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L AA +N S E+ + P G
Sbjct: 259 TEVLTQLPPKIRQRIPFDL-------PSAAAKELNSSFEEWEKLMRDPYSGATETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ E ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRK 474
Query: 667 DALQEIAVEG 676
+ LQ A EG
Sbjct: 475 EKLQ--AEEG 482
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K + A+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 889 KGYLQAVDNEGNPLCLRCQQPTCQTKQERKADAWDSRFCSLKCQEEFWIRSNNSYLRAKV 948
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 949 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKSLL 982
>gi|218200089|gb|EEC82516.1| hypothetical protein OsI_27014 [Oryza sativa Indica Group]
Length = 700
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 264/499 (52%), Gaps = 51/499 (10%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++ GK+P + ++PFQ EGVRF L+ G R LIADEMGLGKTLQAIA+A+C A +L
Sbjct: 196 DLYGKIPTDVESKLMPFQREGVRFALQHGARTLIADEMGLGKTLQAIAVASCLHDAWPVL 255
Query: 248 VVCPAILRLSWAEELERWLPF-------CLP-------ADIHLVFGHRNNPVHLTRFPRV 293
V+ P+ LRL WA ++ WL LP A LV+ + +L
Sbjct: 256 VISPSSLRLHWASMIQHWLNIPTEDILVVLPQTGGSNKAGYRLVYSNTKGDFNLDGV--F 313
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VISY ++ +++ +++ D+ ++I DESH ++ ++ + L V K K +VLLS
Sbjct: 314 NVISYDVVPKIKDMLLDLDFKIVIADESHFLK----NAQAKRTMHSLPVLQKAKYVVLLS 369
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP+LSRP ++F Q+ L+P + K ++ YC +G F + EEL
Sbjct: 370 GTPALSRPIELFTQLQALYPTVY-KNVNEYGNRYC--------KGGFFGLYQGASNHEEL 420
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ L+K TVMIRRLK+ +L QLP KRRQ L L E+ +A E + K
Sbjct: 421 HNLMKATVMIRRLKKDVLSQLPVKRRQQAFLDLSEKEMRHIRALF-----HELETVKIKI 475
Query: 474 PK-DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
DS E DS + I+ Y + AK+ ++L I E++
Sbjct: 476 QSCDSQETMDSLKFAQKNLINKIYNDSAEAKIPAVLDYLG---TIIEAEC---------- 522
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K +IFAHH +L+ + + + +K + +RIDG T RQ+ V FQ +++K A++ I
Sbjct: 523 -KFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTDFQNKDDIKAAVLSIK 581
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGGVGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W
Sbjct: 582 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDV 641
Query: 651 LNKSLRCVSSATNGKYDAL 669
+ L + +G+ L
Sbjct: 642 VQGKLENLGQMLDGQEKTL 660
>gi|345326021|ref|XP_001510449.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Ornithorhynchus anatinus]
Length = 982
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 258/501 (51%), Gaps = 34/501 (6%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L ++ D+++ LP L +LPFQ +G+ F L RGGRC+IADEMGLGKT+QAIAIA +
Sbjct: 18 LKNKCDDQLLSFLPVKLRARLLPFQKDGIAFALARGGRCMIADEMGLGKTIQAIAIAYFY 77
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ LR W EE+E+W+P P +I ++ V +V ++ Y +
Sbjct: 78 KKEWPLLVVTPSSLRYPWVEEIEKWIPELGPEEIVII--QNKTDVGRISTSKVTILGYGL 135
Query: 301 LHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
L +++IE Q + +++VDESH+++ + K +L + R +LL+GTP
Sbjct: 136 LTTDARTLIETLNHQHFKVVVVDESHYMK----SRNASRSKILLPLVQNADRAILLTGTP 191
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNV 415
+L RP ++F QI L+P G ++AK YC+ Y G+ Q D L EL+
Sbjct: 192 ALGRPEELFMQIEALFPKKFGTWT-EYAKKYCNAHVR--YFGRRIQWDCRGASNLSELHR 248
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL +MIRRLK +L QLPPK RQ I L A+ + + + T
Sbjct: 249 LLSD-IMIRRLKSEVLAQLPPKVRQRIPFDLPAGAAKQLNASFEEWEKLMRASASGTTEN 307
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
D G RL ++E +AK ++++ + + S K ++
Sbjct: 308 SGDFSRAMGLITRL----FKETTLAKAGAVKDYIKLM-------------LQNESLKFLV 350
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHHL +L E E + ++RIDG+ +R V FQ + ++A++ I A G G
Sbjct: 351 FAHHLSMLQACTEAAVENKVRYIRIDGSVPSSERMHLVQQFQKDPDTRMAVLSIQAAGQG 410
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+
Sbjct: 411 LTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSVMWGMLNRKA 470
Query: 656 RCVSSATNGKYDALQEIAVEG 676
S NG+ + LQ A EG
Sbjct: 471 GITGSTLNGRKERLQ--AAEG 489
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q + PLC CQ+ +C+S A ++ FC+L C EE+ +R+S +LR ++
Sbjct: 801 KGYVQAVDRDGNPLCLYCQQPSCQSGQQNKAIGWDWRFCSLKCQEEFGIRSSNSYLRAKV 860
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F E GVC C+ + +L I+ QR+ +
Sbjct: 861 FEAERGVCQLCKQNVQELFLRIRDAPTSQRKSLL 894
>gi|222637530|gb|EEE67662.1| hypothetical protein OsJ_25277 [Oryza sativa Japonica Group]
Length = 716
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 264/499 (52%), Gaps = 51/499 (10%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++ GK+P + ++PFQ EGVRF L+ G R LIADEMGLGKTLQAIA+A+C A +L
Sbjct: 212 DLYGKIPTDVESKLMPFQREGVRFALQHGARTLIADEMGLGKTLQAIAVASCLHDAWPVL 271
Query: 248 VVCPAILRLSWAEELERWLPF-------CLP-------ADIHLVFGHRNNPVHLTRFPRV 293
V+ P+ LRL WA ++ WL LP A LV+ + +L
Sbjct: 272 VISPSSLRLHWASMIQHWLNIPTEDILVVLPQTGGSNKAGYRLVYSNTKGDFNLDGV--F 329
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
VISY ++ +++ +++ D+ ++I DESH ++ ++ + L V K K +VLLS
Sbjct: 330 NVISYDVVPKIKDMLLDLDFKIVIADESHFLK----NAQAKRTMHSLPVLQKAKYVVLLS 385
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP+LSRP ++F Q+ L+P + K ++ YC +G F + EEL
Sbjct: 386 GTPALSRPIELFTQLQALYPTVY-KNVNEYGNRYC--------KGGFFGLYQGASNHEEL 436
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ L+K TVMIRRLK+ +L QLP KRRQ L L E+ +A E + K
Sbjct: 437 HNLMKATVMIRRLKKDVLSQLPVKRRQQAFLDLSEKEMRHIRALF-----HELETVKIKI 491
Query: 474 PK-DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
DS E DS + I+ Y + AK+ ++L I E++
Sbjct: 492 QSCDSQETMDSLKFAQKNLINKIYNDSAEAKIPAVLDYLG---TIIEAEC---------- 538
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K +IFAHH +L+ + + + +K + +RIDG T RQ+ V FQ +++K A++ I
Sbjct: 539 -KFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTDFQNKDDIKAAVLSIK 597
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGGVGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W
Sbjct: 598 AGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDV 657
Query: 651 LNKSLRCVSSATNGKYDAL 669
+ L + +G+ L
Sbjct: 658 VQGKLENLGQMLDGQEKTL 676
>gi|297852448|ref|XP_002894105.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297339947|gb|EFH70364.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 673
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 172/499 (34%), Positives = 267/499 (53%), Gaps = 57/499 (11%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EG+ F L+ GGR L+ADEMGLGKTLQAIA+ C + +L++ P
Sbjct: 163 KIPSHIEPKLLPFQREGIEFILQHGGRVLLADEMGLGKTLQAIAVTTCVHESWPVLIIAP 222
Query: 252 AILRLSWAEELERWLPFCLPADIHLVF---------------GHRNNPVHLTRFPRVVVI 296
+ LRL WA + +WL P+DI +V + +HL +V
Sbjct: 223 SSLRLHWATMIHQWL-HVPPSDIVVVLPQPGGSNKCGYTIVSSNTKGTIHLDGVFNIV-- 279
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCS--KRTSEPEEVKAVLDVAAKVKRIVLLSG 354
SY ++ +L K ++ D+ ++I DESH+++ + KRTS A L V K + +LLSG
Sbjct: 280 SYDVVTKLDKLLMALDFKVVIADESHYLKNAQAKRTS------ACLPVIKKAQYAILLSG 333
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP ++F Q+ L+P + + +++ YC +G F + EEL+
Sbjct: 334 TPALSRPIELFKQLEALYPDVY-RNVHEYGSRYC--------KGGFFGAYQGASNHEELH 384
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA---AVGVINDSEKDATND 471
L+K TVMIRRLK+ +L +LP KRRQ + L L ++ A + V+ KD ++
Sbjct: 385 NLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAEKDMKQINALFHELRVVKSKIKDCVSE 444
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
K + + + KI Y + AK+ ++L V
Sbjct: 445 DDIKSLKFTEKN----LINKI-YTDSAGAKIPAVLDYLGT--------------VLEAGC 485
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHH +LD + +F+ +K +G +RIDG+T RQ+ V FQ +E+K A++ I A
Sbjct: 486 KFLVFAHHQSMLDAIHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRA 545
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GVG+ ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A DT D+ W +
Sbjct: 546 AGVGITLTAASTVIFAELAWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVV 605
Query: 652 NKSLRCVSSATNGKYDALQ 670
L + +G+ +AL+
Sbjct: 606 QSKLDNLGQMLDGQENALE 624
>gi|357121797|ref|XP_003562604.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Brachypodium distachyon]
Length = 703
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 175/498 (35%), Positives = 266/498 (53%), Gaps = 51/498 (10%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ ++P + ++PFQ EGVRF L+ GGR LIADEMGLGKTLQAIA+A+C A +LV
Sbjct: 201 LYDRIPTDVESKLMPFQREGVRFSLQHGGRVLIADEMGLGKTLQAIAVASCLHDAWPVLV 260
Query: 249 VCPAILRLSWAEELERWLPF-------CLP-------ADIHLVFGHRNNPVHLTRFPRVV 294
+ P+ LRL WA +++WL LP A LV+ + L
Sbjct: 261 ISPSSLRLHWATMIQQWLNIPTEDILVVLPQTGGSNKAGFRLVYSNTKGDFDLDGV--FN 318
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
VISY ++ +++ ++++ D+ ++I DESH ++ ++ + A L V K + +VLLSG
Sbjct: 319 VISYDVIPKIQSTLLDLDFKIVIADESHFLK----NAQAKRTIASLPVLQKAQYVVLLSG 374
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP ++F Q+ L+P + K ++ YC +G F + EEL+
Sbjct: 375 TPALSRPIELFTQLQALYPNVY-KNVNEYGNRYC--------KGGFFGMYQGASNHEELH 425
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
L+K TVMIRRLK+ +L +LP KRRQ + L L E+ +A E + K
Sbjct: 426 NLMKATVMIRRLKKDVLSELPVKRRQQVFLDLSEKEMKHIRALF-----RELETVKIKMQ 480
Query: 475 K-DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
DS E DS + I+ Y + AK+ ++L + E+D
Sbjct: 481 SCDSKEMFDSLKFNQKNIINKIYTDSADAKIPAVLDYLG---TVIEADC----------- 526
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K +IFAHH ++D + + + +K + +RIDG T RQ+ V FQ +++K A++ I A
Sbjct: 527 KFLIFAHHQPMIDAIHQHLLKKKVNCIRIDGQTPVAVRQTLVTDFQNKDDIKAAVLSIKA 586
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GGVGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A +T D+ W +
Sbjct: 587 GGVGLTLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNIYYLLANETVDDIIWDVV 646
Query: 652 NKSLRCVSSATNGKYDAL 669
L + +G+ L
Sbjct: 647 QGKLENLGQMLDGQEKTL 664
>gi|297471769|ref|XP_002685457.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3 [Bos
taurus]
gi|358410961|ref|XP_003581888.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3 [Bos
taurus]
gi|408407572|sp|E1BB03.3|ZRAB3_BOVIN RecName: Full=DNA annealing helicase and endonuclease ZRANB3;
AltName: Full=Annealing helicase 2; Short=AH2; AltName:
Full=Zinc finger Ran-binding domain-containing protein
3; Includes: RecName: Full=DNA annealing helicase
ZRANB3; Includes: RecName: Full=Endonuclease ZRANB3
gi|296490526|tpg|DAA32639.1| TPA: zinc finger, RAN-binding domain containing 3 [Bos taurus]
Length = 1074
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 177/490 (36%), Positives = 261/490 (53%), Gaps = 42/490 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAI IA + +L+V P+
Sbjct: 29 LPDKLRAKLLPFQKDGITFALRRDGRCMVADEMGLGKTVQAIGIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR W EE+E+W+P P +I+++ V +V V+ Y +L +++I+
Sbjct: 89 SLRYPWTEEIEKWIPELSPEEINVI--QNKTDVGRISTSKVTVLGYGLLTTDAETLIDAL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T + +L + K KR +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFKVVIVDESHYMKSRSATRS----RILLPIVQKAKRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGTWT-EYAKRYCNAHV--RYFGRRSQWDCRGASNLNELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L AA +N S E+ + P G
Sbjct: 259 TEVLTQLPPKIRQRIPFDL-------PSAAAKELNSSFEEWEKLMRDPYSGATETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ E ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPETRVAILSIQAAGQGLTFTAATHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRK 474
Query: 667 DALQEIAVEG 676
+ LQ A EG
Sbjct: 475 EKLQ--AEEG 482
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K + A+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 893 KGYLQAVDNEGNPLCLRCQQPTCQTKQERKADAWDSRFCSLKCQEEFWIRSNNSYLRAKV 952
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 953 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKSLL 986
>gi|343960649|dbj|BAK61914.1| zinc finger RAN-binding domain-containing protein 3 [Pan
troglodytes]
Length = 526
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 174/492 (35%), Positives = 266/492 (54%), Gaps = 44/492 (8%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI I + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRL 304
L+V P+ LR W EE+E+W+P P +I+++ N + R +V V+ Y +L
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI----QNKADVRRMSTSKVTVLGYGLLTAD 138
Query: 305 RKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
K++I+ Q++ ++IVDESH+++ T + +L + K +R +LL+GTP+L R
Sbjct: 139 AKTLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPIVQKARRAILLTGTPALGR 194
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQ 419
P ++F QI L+P G+ D+AK YC+ Y G+ Q +G L EL+ LL
Sbjct: 195 PEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD 251
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSD 478
+MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 252 -MMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGA 303
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
G R+ +++ IAK ++++ + + ++D S K ++FAH
Sbjct: 304 METVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAH 346
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
HL +L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F
Sbjct: 347 HLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTF 406
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ +
Sbjct: 407 TAASHVVFAELYWDPGRIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVT 466
Query: 659 SSATNGKYDALQ 670
S NG+ + +Q
Sbjct: 467 GSTLNGRKEKIQ 478
>gi|355566023|gb|EHH22452.1| hypothetical protein EGK_05722 [Macaca mulatta]
Length = 1078
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 180/501 (35%), Positives = 273/501 (54%), Gaps = 52/501 (10%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
++++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI IA + +
Sbjct: 23 EKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGIAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRL 304
L+V P+ LR W EE+E+W+P P +I+++ N R +V V+ Y +L
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI----QNKTEKKRISTSKVTVLGYGLLTAD 138
Query: 305 RKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+++I+ Q++ ++IVDESH+++ T + +L V K +R +LL+GTP+L R
Sbjct: 139 AETLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPVVQKARRAILLTGTPALGR 194
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQ 419
P ++F QI L+P G+ D+AK YC+ + Y G+ Q D L EL+ LL
Sbjct: 195 PEELFMQIEALFPQKFGRWT-DYAKRYCNARI--RYFGKRPQWDCRGASNLNELHQLLSD 251
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSD 478
+MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 252 -IMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTP---- 299
Query: 479 EHDDSGAC-CRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
+SGA +G I+ +++ IAK ++++ + + ++D S K ++
Sbjct: 300 ---NSGAMETVMGLITHMFKQTAIAKAGAVKDYIKM---MLQND----------SLKFLV 343
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHHL +L E + E ++RIDG +R V+ FQ + ++AI+ I A G G
Sbjct: 344 FAHHLSMLQACTEAVIENKTRYIRIDGGVSSSERIHLVNQFQKDPDTRVAILSIQAAGQG 403
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+
Sbjct: 404 LTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKA 463
Query: 656 RCVSSATNGKYDALQEIAVEG 676
+ S NG+ + +Q A EG
Sbjct: 464 QVTGSTLNGRKEKIQ--AEEG 482
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A ++ FC+L C EE+ +R++ +LR +
Sbjct: 897 KGYLQAVDNEGNPLCLHCQQPTCQTKQACKVNAWDSRFCSLKCQEEFWIRSNNSYLRARV 956
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F E GVC C ++ +L ++ QR+K +
Sbjct: 957 FETERGVCQLCNVNAQELFLRLRDAPKSQRKKLL 990
>gi|395843290|ref|XP_003794425.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Otolemur garnettii]
Length = 1077
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 258/484 (53%), Gaps = 40/484 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ EG+ F LRR GRC++ADEMGLGKT+Q I+IA + +L+V P+
Sbjct: 29 LPDKLRANLLPFQKEGITFALRRDGRCMVADEMGLGKTIQGISIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
LR WAEE+E+W+P P +++++ V +V ++ Y +L K++I+
Sbjct: 89 SLRYPWAEEIEKWIPELGPEEVNII--QNKTDVRRILTSKVTILGYGLLTTDAKTLIDTL 146
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ + K +L + K R +LL+GTP+L RP ++F QI
Sbjct: 147 NNQNFKVVIVDESHYMK----SRNAARSKILLPMVQKATRAILLTGTPALGRPEELFMQI 202
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G D+AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 203 EALFPQKFGSWN-DYAKRYCNAHI--RYFGKRPQWDCRGASNLNELHQLLSD-IMIRRLK 258
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGAC 486
+L QLPPK RQ I L AA +N S E+ + P G
Sbjct: 259 TEVLTQLPPKIRQRIPFDL-------LPAAAKELNTSLEEWEKLMRGPNSGATETVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 312 TRI----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIENKTRYIRIDGSVPSSERIQLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDNLMWGMLNRKAQVTGSTLNGRK 474
Query: 667 DALQ 670
+ +Q
Sbjct: 475 EKIQ 478
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 46/263 (17%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC--LKENPGYRHAIQAF 811
S+ T RIHLY+ + + +F P + LD E + LK+N R I F
Sbjct: 739 ASKNTDRIHLYT------KDGKQMNCNFIPLDIKLDLWEDLPASFQLKQN---RSLILRF 789
Query: 812 INEWNAL-----RPIERT-KLLGKPLQL----------PLSVELCYLKETINHSSGGLLK 855
I EWN+L R I R+ +L P + P KE + +S +K
Sbjct: 790 IQEWNSLTAMKQRIIRRSGQLFCSPFLVLEEITKQQTKPNCTTRYTTKEDVAVASADKVK 849
Query: 856 --GGSKRRTTPSLEISHP-----LPSGAEWKKVRICSGSRK------KEKEYTQGWTIND 902
GG R T P L GA + C+ K Y Q
Sbjct: 850 NAGGHLRLITKESGPWDPFTKKFLEDGACVPFLNPCTAQADLTVKPFSSKGYLQAVDSEG 909
Query: 903 EPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNC 961
PLC CQ+ +C++K A NA ++ FC+L C EE+ +R++ +LR ++F E GVC C
Sbjct: 910 NPLCLCCQQPSCQTKQA-NA--WDSRFCSLKCQEEFWIRSNNSYLRAKVFETERGVCQLC 966
Query: 962 QLDCHKLVKHIKPLSLEQRRKYI 984
+++ +L ++ + QR+ +
Sbjct: 967 KVNAQELFLRMRDAPISQRKNLL 989
>gi|356545812|ref|XP_003541328.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Glycine max]
Length = 665
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 171/496 (34%), Positives = 264/496 (53%), Gaps = 51/496 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EGVRF L+ GGR L+ADEMGLGKTLQAIA+A+C + +L++ P
Sbjct: 164 KIPSFIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCVQDSWPVLIIAP 223
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRN---------------NPVHLTRFPRVVVI 296
+ LRL WA +++WL +DI +V + +HL + I
Sbjct: 224 SSLRLQWASMIQQWLNIP-SSDILIVLSQNGGSNRGGFNIVSSSAKSSIHLDGLFNI--I 280
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +L+ ++ ++ ++I DESH ++ ++ + A L V K + +LLSGTP
Sbjct: 281 SYDLVPKLQNMLMTCNFKVVIADESHFLK----NAQAKRTTASLPVIKKAQYALLLSGTP 336
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F Q+ L+P + + +++ YC +G F + EEL+ L
Sbjct: 337 ALSRPIELFKQLEALYPDVY-RNVHEYGNRYC--------KGGFFGVYQGASNHEELHNL 387
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K TVMIRRLK+ +L QLP KRRQ + L L ++ K + + E K K
Sbjct: 388 IKATVMIRRLKKDVLSQLPVKRRQQVFLDLAGKDM---KQINALFRELEMVKAKIKAAKS 444
Query: 477 SDEHDDSGACCR--LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
+E + + + KI Y + AK+ +++ V K +
Sbjct: 445 QEEAESLKFAQKNLINKI-YTDSAEAKIPSVLDYVGT--------------VIEAGCKFL 489
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
IFAHH ++D + EF+ +K +G +RIDG+T RQ V FQ + +K A++ I AGGV
Sbjct: 490 IFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTDFQEKDSIKAAVLSIKAGGV 549
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W +
Sbjct: 550 GLTLTAASTVIFSELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQNK 609
Query: 655 LRCVSSATNGKYDALQ 670
L + +G +AL+
Sbjct: 610 LENLGQMLDGHENALE 625
>gi|255556614|ref|XP_002519341.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
communis]
gi|223541656|gb|EEF43205.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
communis]
Length = 674
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/496 (34%), Positives = 265/496 (53%), Gaps = 51/496 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +L FQ +GVRF L+ GGR LIADEMGLGKTLQAIA+ AC +L++ P
Sbjct: 173 KVPDYIESKLLSFQRDGVRFVLQHGGRALIADEMGLGKTLQAIAVTACLRDFWPVLILTP 232
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFG---------------HRNNPVHLTRFPRVVVI 296
+ LRL WA +++WL +DI +V + +HL + I
Sbjct: 233 SSLRLHWASMIQQWLHIP-SSDILVVLSQWSGSNRGGFTIVSSNTKGSIHLDGLFNI--I 289
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +L+ ++ ++ ++I DESH ++ ++ + A L V K + VLLSGTP
Sbjct: 290 SYDVVPKLQNVLMASEFKVVIADESHFMK----NAQAKRTTASLPVIKKAQYAVLLSGTP 345
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F Q+ L+P + + +++ YC +G +F + EEL+ L
Sbjct: 346 ALSRPIELFKQLEALYPDVY-RNVHEYGNRYC--------RGGIFGVYQGASNHEELHNL 396
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K TVMIRRLK+ +L +LP KRRQ + L L ++ K + + E K
Sbjct: 397 MKATVMIRRLKKDVLAELPLKRRQQVFLDLAEKDM---KKINALFRELEVVKGKIKACSS 453
Query: 477 SDEHDDSGACCR--LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
++E + + + KI Y + AK+ G ++L+ V K +
Sbjct: 454 AEEVESLKFSEKNIINKI-YTDSAEAKIPGVLDYLAT--------------VIEAGCKFL 498
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
IFAHH ++D + EF+ +K +G +RIDG T P RQS V FQ + +K A++ I AGGV
Sbjct: 499 IFAHHQPMIDSIHEFLVKKKVGCIRIDGRTPPVSRQSLVTDFQEKDAIKAAVLSIKAGGV 558
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+ W +
Sbjct: 559 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSK 618
Query: 655 LRCVSSATNGKYDALQ 670
L + +G +AL+
Sbjct: 619 LENLGQMLDGHENALE 634
>gi|403362793|gb|EJY81131.1| SNF2 family N-terminal domain containing protein [Oxytricha
trifallax]
Length = 1116
Score = 272 bits (695), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 162/492 (32%), Positives = 263/492 (53%), Gaps = 54/492 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP +L+ + FQ +G+ FG R GR L+ DEMG+GKT+QAI I+ + + +V P+
Sbjct: 341 LPPKILENLYEFQKKGIEFGFSRFGRLLLGDEMGVGKTIQAIGISYGYKQDWPLFIVAPS 400
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR +W +E+ +W+P DI + + + + ++SY + + + + +
Sbjct: 401 SLRYTWKDEIMKWIPTIKEKDIQMF---KKGTDQWSPDACIFIMSYDLAQKRHEEIDAKK 457
Query: 313 WALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ + I DE+H++ R SKR+ K ++ + K KR++L+SGTP LSRPY+I++ + +
Sbjct: 458 FKICIADEAHYLKSRDSKRS------KHLMPILTKAKRVILISGTPMLSRPYEIYNLMKI 511
Query: 371 LWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L P ++G + +++ YC+ K T G D++ +EL+ +L Q+VMIRRLK+
Sbjct: 512 LRPDIVG-SFTEYSARYCNPKETPYGM------DYTGNSCTKELHYILSQSVMIRRLKKE 564
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA-------TNDKTP-------- 474
+L QLPPKRRQ I++ + K + + + E D D T
Sbjct: 565 VLDQLPPKRRQKIQVQTDAKLVTQVKKILNNLKNDEGDVEKFVQTLITDNTSFSEYLSGQ 624
Query: 475 -KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
++ E DD+ +Y+ G +K+ G +++ + S K
Sbjct: 625 RANNKEQDDNSFMS-----AYRLTGESKIDGITDFMDT--------------LIQNSCKF 665
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
I+FAHH V+DG++EF+ + +G++RIDG T R V FQ ++ KIAI+ ITA
Sbjct: 666 IVFAHHQVVMDGIEEFVKKTKVGYIRIDGKTNVDHRHDRVTKFQNDDDTKIAILSITACS 725
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
GL ++A +VF E+ +PS+M QAEDRAHR Q + VNIY DT DE +Q L +
Sbjct: 726 QGLTLTAASTIVFAEMFWTPSIMTQAEDRAHRISQQNCVNIYYLHGPDTVDEMLFQMLAE 785
Query: 654 SLRCVSSATNGK 665
+ VS A +GK
Sbjct: 786 KSQVVSDALDGK 797
>gi|443684099|gb|ELT88125.1| hypothetical protein CAPTEDRAFT_113875 [Capitella teleta]
Length = 1042
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 198/588 (33%), Positives = 300/588 (51%), Gaps = 61/588 (10%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
++ + LP L ++ FQ EGV F L+ GRCLIADEMGLGKTLQA++ A F +
Sbjct: 1 MENRLSYLPSRLRGRLMAFQKEGVVFALKNAGRCLIADEMGLGKTLQALSAAYFFRNEWP 60
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR-- 303
+L++ P+ +R SW EE+E+WLP P DI+LV + V R+ +++Y ++
Sbjct: 61 LLIIVPSSIRYSWIEEIEKWLPEINPRDINLVMSGMD--VGNIPTARISIVTYGLIRHPA 118
Query: 304 ---LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+R+++++Q + +LI+DESH ++ K K ++ + KR LL+GTP+LSR
Sbjct: 119 CKLVREALVKQKFQVLILDESHMIKNRKSAG----TKFLVPLLRNAKRKFLLTGTPALSR 174
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQ 419
P ++F Q+ L P FA+ YCD VQ + G++ + + GV EEL+ +L
Sbjct: 175 PEELFPQLEALDPKRFNNWN-KFAQRYCDAH-VQKF-GRISRYITSGVSNAEELHSVLTT 231
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT-PKDSD 478
++MIRRLK +L QLPPK+RQ I LK SE+ V+N + ++T + P+
Sbjct: 232 SLMIRRLKSAVLTQLPPKQRQKIPFDLKDSELKK------VLNCACSNSTWTRVEPRFFV 285
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ IS Q L ++++ + + ES S KMI+FAH
Sbjct: 286 FENHFLFAVNFILISLQ------LGPVKDYVKM---MCESC----------SEKMIVFAH 326
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H+ +LD V + + E I F+RIDG+T +DR V FQ+ ++IA++ + A GVGL
Sbjct: 327 HIMMLDSVCQTLIENKIQFIRIDGSTCQQDRPHFVRQFQVDPSIRIAVLSMKAAGVGLTL 386
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A V+F EL +P M Q EDRAHR GQ S VN++ A T D W L + V
Sbjct: 387 TAANVVIFAELDWTPGHMEQCEDRAHRIGQKSNVNVHYLVANGTVDSYMWSALCRKTTVV 446
Query: 659 SSATNGKYDALQE-----IAVEGVSYLEMSD----KTDRGSEDLTLDQVAS----SDQFQ 705
++ NG L+ AV+ +S E D KT+ E Q + SD+
Sbjct: 447 TTTLNGCTKTLEAEFGDGNAVQCLSNAEAYDPEKLKTNDSMEFFPTTQSQTVRIYSDENS 506
Query: 706 ELMK---VPESSEASDFRAINTNDEITAKMNDKL----LEESKTDHSP 746
E P F A ND I + D + L+ES +P
Sbjct: 507 EFRTNRCKPTKYTDESFNATLDNDRIEISLEDTVESPQLKESDIVETP 554
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 105/272 (38%), Gaps = 54/272 (19%)
Query: 757 SQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGYRHAIQAFINE 814
S YT R+HL+ D + L +F P + + N + L +RH + F+ +
Sbjct: 700 SLYTSRVHLF------DINGKCLQMNFVPMDITMKNLSELPDTLLHPTNFRH-LTVFMKQ 752
Query: 815 WNALRPIERTKLL--GKPLQLPLSVELCYLK----------------------------- 843
WN+L ++ ++ G+P P+ + LK
Sbjct: 753 WNSLSVAKQRMVIRHGEPFLNPVLLYEEQLKGGRKLTNQRYLTKANLASAAAEKAKSVNG 812
Query: 844 --ETINHSSGGLLKGGSKRRTT--PSLEISHPLPSGAEWKKVRICSGSRKKEKE-YTQGW 898
I+ SS K K T PS H K ++ SR E Y Q
Sbjct: 813 TLRLISRSSPKQSKKAEKCDDTLRPSQMSKHEFV-----KAIQEADESRLNNMEGYVQAV 867
Query: 899 TINDEPLCKLCQKTCKSK----NAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIE 954
PLC C K S +A + ++ C++ C E+Y L++S + R+ ++ E
Sbjct: 868 NAQGVPLCINCHKEFPSNQVSASALRSHAWQTRLCSVSCTEQYWLKSSREYGRKAVYDAE 927
Query: 955 HGVCTNCQLDCHKLVKHIKPLSLEQRRKYIVR 986
HG C C ++ H+ ++ + ++R +++
Sbjct: 928 HGQCQLCGIEAHQFFTNLNMIHDRKKRAEMIQ 959
>gi|326922946|ref|XP_003207703.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Meleagris gallopavo]
Length = 760
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 171/533 (32%), Positives = 286/533 (53%), Gaps = 52/533 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ +N +EVE +P V++ + I + VVD
Sbjct: 194 FLLEDYPKLMKVFQNLVSVEVEPLPG---TVIQAFAAQIQSSTSQKMDFPDADLSVVDSK 250
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
I + ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 251 I-------VTSLMPFQREGVNFAVLKNGRLLLADDMGLGKTVQAICIAAYYQKEWPLLVV 303
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P +++ +++ LT + +IS+ +L ++ K I
Sbjct: 304 TPSSVRFTWAEAFHRWLPSLRPGSTNVIVTGKDS---LTA-SLINIISFDLLSKMDKQ-I 358
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH+++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 359 KSTFQVIIIDESHYLKNIKTA----RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQIA 414
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ PG + + F YCD K + G+ D+S L EL +LL++++MIRRLK
Sbjct: 415 AVQPGFFPQF-HTFGLRYCDAKKMPWGW------DYSGSSNLVELKILLEESIMIRRLKS 467
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R ++++ E ++AK + +++K A ++ + E
Sbjct: 468 DVLSQLPAKQR---KMVVVAPEGINAKTKAMLAAEAKKMAKGYESKQQEKEA-------- 516
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ Y AK+ E++ + ES +K ++FAHH VLD + E
Sbjct: 517 -LLLFYNRTAEAKIHSVIEYIL---ELLESG----------KDKFLVFAHHKVVLDAIVE 562
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +K ++RIDG+T +RQS FQLS + +A++ +TA +GL S+A VVF E
Sbjct: 563 ELEKKHFDYIRIDGSTPSAERQSLCQKFQLSEKQAVAVLSLTAANMGLTLSAADLVVFAE 622
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
L +P +++QAEDRAHR GQTS+VN++ A+ T D+ W + + ++ + A
Sbjct: 623 LFWNPGVLIQAEDRAHRIGQTSSVNVHYLVARGTADDFLWPMIQEKIKVLGEA 675
>gi|449498863|ref|XP_004160655.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Cucumis sativus]
Length = 725
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 265/501 (52%), Gaps = 53/501 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
KLP + ++LPFQ EGVRF L+ GGR L+ADEMGLGKTLQAIA+AAC A +L++ P
Sbjct: 222 KLPADIESMLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVAACVREAWPVLILTP 281
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGH---------------RNNPVHLTRFPRVVVI 296
+ LRL WA +++WL +DIH+V + +HL +I
Sbjct: 282 SSLRLHWAAMIQQWLKIP-SSDIHVVLSQYCGSNKGGFTILSSSSKSSLHLDGLFN--II 338
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +L+ ++ ++ ++I DESH + + ++ + A + V K + +LLSGTP
Sbjct: 339 SYDVVQKLQNILMASEFKVVIADESHFM----KNAQAKRTVACVPVIQKAQYAILLSGTP 394
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++ Q+ L+P + K +++ YC T YQG S V EL+ L
Sbjct: 395 ALSRPIELLKQLEALYPNVYKKV-HEYGNRYCKGGTFGLYQGA-----SNHV---ELHNL 445
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K T+MIRRLK+ +L +LP KRRQ + L L +I +A E + K
Sbjct: 446 MKATLMIRRLKKDVLSELPQKRRQQVFLDLAEKDIREIRALF-----CELEVVKGKIKAC 500
Query: 477 SDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
E +S + I+ Y + AK+ +L V K +
Sbjct: 501 RSEEVESLKFQQKNLINKIYTDSAEAKIPAVLNYLET--------------VIEAGCKFL 546
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+FAHH ++D + +F +K + +RIDG T P RQ+ V FQ + + A++ I AGGV
Sbjct: 547 VFAHHQPMIDAIHQFFQKKKVNCIRIDGGTPPAMRQALVSEFQQKDSIMAAVLSIKAGGV 606
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A DT D+ W +
Sbjct: 607 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSK 666
Query: 655 LRCVSSATNGKYDALQEIAVE 675
L + +G+ + L E+AV+
Sbjct: 667 LENLGQMLDGEENTL-EVAVK 686
>gi|354471091|ref|XP_003497777.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Cricetulus griseus]
Length = 1069
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 179/489 (36%), Positives = 263/489 (53%), Gaps = 50/489 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L + +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIA+A + +L+V P+
Sbjct: 29 LPYKLREKLLPFQKDGIIFALRRDGRCMVADEMGLGKTIQAIAVAYFYKEEWPMLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTML----HRLRK 306
LR W EELE+W+P P DI+++ N R RV V+ Y ++ L
Sbjct: 89 SLRYPWTEELEKWIPELEPEDINIIM----NKTDFGRISTSRVTVLGYGLITTDAETLMN 144
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
++ Q++ ++IVDESH+++ RT+ K +L + + +R +LL+GTP+L RP ++F
Sbjct: 145 ALNSQNFQVVIVDESHYMK--SRTAA--RSKLLLPLVQRARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q D L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHI--RYFGKRRQWDCRGASNLGELHQLLSD-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P +SG
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAP-------NSG 302
Query: 485 AC-CRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
A +G I+ +++ IAK ++++ + + S K ++FAHHL
Sbjct: 303 AMETVMGLITCMFKQTAIAKAGAVKDYIKML-------------LQNESLKFLVFAHHLS 349
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+L E + E ++RIDG+ +R V+ FQ ++AI+ I A G GL F++A
Sbjct: 350 MLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPNTRVAILSIQAAGQGLTFTAA 409
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 410 SHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGST 469
Query: 662 TNGKYDALQ 670
NG+ + LQ
Sbjct: 470 LNGRKERLQ 478
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 154/349 (44%), Gaps = 56/349 (16%)
Query: 676 GVSYLEMSDKTDR-GSE-DLTLDQVASSDQFQELMKVPESSE--ASDFRAIN--TNDEIT 729
G+++++ +K + GS+ + + + AS D ++L + P + S A+N D +T
Sbjct: 645 GLNHMQHDNKNEEVGSQKNTSKNDQASLDCVKQLPEQPTPKQLPTSKEEALNGEKEDRVT 704
Query: 730 AKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE-- 787
++ + L S T H ET S+ T RIHLY+ +P+ +F P +
Sbjct: 705 SQAGHEQLNNSDT-HPVCET--FMFCASRNTDRIHLYT------KDGKPMSCNFIPLDIK 755
Query: 788 LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL---PL------- 835
LD E + LK+N R I F+ EWN+L +++ +L+ K QL P+
Sbjct: 756 LDLWEDLPASFQLKQN---RSLILRFVREWNSLTAMKQ-RLIRKSGQLFCSPILALEEIT 811
Query: 836 -------SVELCYLKETINHSSGGLLK--GGSKRRTTPSLEISHPL-PSGAEWKKVRI-- 883
S + KE + +S +K GG R T S P PS + K +
Sbjct: 812 KQQAKENSAKRYITKEDVATASMNKVKADGGHIRLITRE---SRPRDPSTKKLDKACVPS 868
Query: 884 ---CSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYE 935
C E K Y Q +PLC CQ TC+ ++ FC+L C E
Sbjct: 869 LNPCQADLTVEPSSSKGYIQAVDKEGKPLCLRCQHPTCQPVQGSKTSTWDSRFCSLKCQE 928
Query: 936 EYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
E+ +R++ +LR ++F EHGVC C ++ +L ++ QR+ +
Sbjct: 929 EFWIRSNNSYLRAQVFATEHGVCQLCSMNAQELFLRVRDAPKSQRKNLL 977
>gi|414887797|tpg|DAA63811.1| TPA: hypothetical protein ZEAMMB73_058078 [Zea mays]
Length = 705
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 172/502 (34%), Positives = 266/502 (52%), Gaps = 63/502 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P L ++PFQ EG+RF L+ GGR LIADEMGLGKTLQAIA+A+C A +LV+ P
Sbjct: 207 RIPPHLESKLMPFQREGIRFVLQHGGRALIADEMGLGKTLQAIAVASCLRDAWPVLVISP 266
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV---------------VI 296
+ LRL WA ++ WL + DI +V H H F RV VI
Sbjct: 267 SSLRLHWASAIQSWLNIPV-EDILVVLPHTGGS-HKAGF-RVAYSNSKGDFHLDGVFNVI 323
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +++ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP
Sbjct: 324 SYDVVPKIQSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTP 379
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F QI L+P + K+ ++ YC +G F + EEL+ L
Sbjct: 380 ALSRPIELFTQIQALYPTVY-KSVSEYGNIYC--------KGGFFGLYQGASNHEELHNL 430
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K TVMIRRLK+ +L QLP KRRQ + L L ++ + +A +T K
Sbjct: 431 MKATVMIRRLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKV 480
Query: 477 SDEHDDSGACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
E DS + +YQ + +AK+ ++L +I E
Sbjct: 481 KIESSDSKEMIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLGT--MIEEG---------- 528
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K +IFAHH ++D +++ + +K + ++IDG T RQ+ V FQ +++VK A++
Sbjct: 529 --CKFLIFAHHQPMIDAIEKHLLKKKVKCIKIDGKTPLTTRQTLVTDFQNNDDVKAAVLS 586
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
I AGG G+ ++A V+F EL +P ++QAEDRAHR GQ S+VN+Y + T D+ W
Sbjct: 587 IKAGGYGITLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNVYYLLSNGTIDDLMW 646
Query: 649 QNLNKSLRCVSSATNGKYDALQ 670
+ L + +G+ L+
Sbjct: 647 DVVQGKLENLGQMLDGQEKTLE 668
>gi|449459866|ref|XP_004147667.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Cucumis sativus]
Length = 725
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 265/501 (52%), Gaps = 53/501 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
KLP + ++LPFQ EGVRF L+ GGR L+ADEMGLGKTLQAIA+AAC A +L++ P
Sbjct: 222 KLPADIESMLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVAACVREAWPVLILTP 281
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGH---------------RNNPVHLTRFPRVVVI 296
+ LRL WA +++WL +DIH+V + +HL +I
Sbjct: 282 SSLRLHWAAMIQQWLKIP-SSDIHVVLSQYCGSNKGGFTILSSSSKSSLHLDGLFN--II 338
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +L+ ++ ++ ++I DESH + + ++ + A + V K + +LLSGTP
Sbjct: 339 SYDVVQKLQNILMASEFKVVIADESHFM----KNAQAKRTVACVPVIQKAQYAILLSGTP 394
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++ Q+ L+P + K +++ YC T YQG S V EL+ L
Sbjct: 395 ALSRPIELLKQLEALYPNVY-KNVHEYGNRYCKGGTFGLYQGA-----SNHV---ELHNL 445
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K T+MIRRLK+ +L +LP KRRQ + L L +I +A E + K
Sbjct: 446 MKATLMIRRLKKDVLSELPQKRRQQVFLDLAEKDIREIRALF-----CELEVVKGKIKAC 500
Query: 477 SDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
E +S + I+ Y + AK+ +L V K +
Sbjct: 501 RSEEVESLKFQQKNLINKIYTDSAEAKIPAVLNYLET--------------VIEAGCKFL 546
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+FAHH ++D + +F +K + +RIDG T P RQ+ V FQ + + A++ I AGGV
Sbjct: 547 VFAHHQPMIDAIHQFFQKKKVNCIRIDGGTPPAMRQALVSEFQQKDSIMAAVLSIKAGGV 606
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A DT D+ W +
Sbjct: 607 GLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSK 666
Query: 655 LRCVSSATNGKYDALQEIAVE 675
L + +G+ + L E+AV+
Sbjct: 667 LENLGQMLDGEENTL-EVAVK 686
>gi|42562605|ref|NP_175265.3| chromatin remodeling factor18 [Arabidopsis thaliana]
gi|332194152|gb|AEE32273.1| chromatin remodeling factor18 [Arabidopsis thaliana]
Length = 673
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 170/498 (34%), Positives = 267/498 (53%), Gaps = 57/498 (11%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EG+ F L+ GGR L+ADEMGLGKTLQAIA+ C + +L++ P
Sbjct: 163 KIPSHIEPKLLPFQREGIEFILQHGGRVLLADEMGLGKTLQAIAVTTCVQESWPVLIIAP 222
Query: 252 AILRLSWAEELERWLPFCLPADIHLVF---------------GHRNNPVHLTRFPRVVVI 296
+ LRL WA + +WL P+DI +V + +HL +V
Sbjct: 223 SSLRLHWATMIHQWL-HVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFNIV-- 279
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
SY ++ +L K ++ D+ ++I DESH ++ +KRTS A L V K + +LLSG
Sbjct: 280 SYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTS------ACLPVIKKAQYAILLSG 333
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP ++F Q+ L+P + + +++ YC +G F + +EL+
Sbjct: 334 TPALSRPIELFKQLEALYPDVY-RNIHEYGGRYC--------KGGFFGTYQGASNHDELH 384
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA---AVGVINDSEKDATND 471
L+K TVMIRRLK+ +L +LP KRRQ + L L ++ A + V+ KD ++
Sbjct: 385 NLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKIKDCISE 444
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
K + + + KI Y + +AK+ ++L +V
Sbjct: 445 DDIKSLKFIEKN----LINKI-YTDSAVAKIPAVLDYLE--------------NVIEAGC 485
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHH +L+ + +F+ +K +G +RIDG+T RQ+ V FQ +E+K A++ I A
Sbjct: 486 KFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRA 545
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GVG+ ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A DT D+ W +
Sbjct: 546 AGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVV 605
Query: 652 NKSLRCVSSATNGKYDAL 669
L + +G+ +AL
Sbjct: 606 QSKLDNLGQMLDGQENAL 623
>gi|344268120|ref|XP_003405911.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Loxodonta africana]
Length = 1080
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/490 (34%), Positives = 257/490 (52%), Gaps = 36/490 (7%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAI IA + +L+V P+
Sbjct: 23 LPDKLRTKLLPFQKDGITFALRRDGRCMVADEMGLGKTIQAIGIAYFYKEEWPLLIVVPS 82
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EE+E+W+P P +I ++ N + R +V ++ Y +L K++I+
Sbjct: 83 SLRYPWTEEIEKWIPELGPEEITVI----QNKADVGRISTSKVTILGYGLLTTDAKTLID 138
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 139 TLNNQNFRVVIVDESHYMK--SRTAA--RSKILLPLVQKARRAILLTGTPALGRPEELFM 194
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
QI L+P G D++K YC+ V+ + + D L EL+ LL +MIRRL
Sbjct: 195 QIEALFPQKFGTWT-DYSKRYCNAH-VRYFGRRPLWDCRGASNLNELHQLLSD-IMIRRL 251
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K +L QLPPK RQ I L + + + +D T S G
Sbjct: 252 KSEVLTQLPPKIRQRIPFDLPAAAAKELNTSFEEWERLMRALNSDATETGSPFFQVMGLI 311
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
R+ +++ IAK ++++ + + S K ++F HHL +L
Sbjct: 312 TRM----FKQTAIAKAGAVKDYIKMM-------------LQNESLKFLVFGHHLSMLQAC 354
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
E + E +VRIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 355 TEAVIESKTRYVRIDGSVPSLERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAATHVVF 414
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL P + QAEDR HR GQ ++VNI+ A T D W LN+ + S NG+
Sbjct: 415 AELYWDPGHIKQAEDRVHRIGQCNSVNIHYLVANGTLDTLMWGMLNRKAQVTGSTLNGRK 474
Query: 667 DALQEIAVEG 676
+ LQ A EG
Sbjct: 475 EQLQ--AEEG 482
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 114/266 (42%), Gaps = 51/266 (19%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGC--LKENPGYRHAIQAF 811
S+ T RIHLY+ + + +F P + LD E + LK+N R I F
Sbjct: 741 ASKNTDRIHLYT------KDGKQMNCNFIPLDIKLDLWEDLPANFQLKQN---RSLILRF 791
Query: 812 INEWNALRPIERTKLLGKPLQLPLSVELCY-----------------LKETINHSS---- 850
+ EWN+L +++ +++ K QL S L + KE + +S
Sbjct: 792 VREWNSLTAMKQ-RIIRKSGQLFCSPILAFEEITKQQTKQNSTKRYITKEDVAAASMDKV 850
Query: 851 ---GGLLKGGSKRRTTPSLE--------ISHPLPSGAEWKKVRICSGSRKKEKEYTQGWT 899
GG ++ +K PS + + P P A+ S S K Y Q
Sbjct: 851 KNDGGHVRLITKESHDPSAKKFLGAGACVPFPNPCTAQSDLTVKPSTS----KGYLQAVD 906
Query: 900 INDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVC 958
PLC CQ+ TC++ ++ FC+L C EE+ +R++ +LR ++F EHGVC
Sbjct: 907 NEGNPLCLFCQQPTCQTNQECKVNTWDSRFCSLKCQEEFWIRSNNSYLRAKVFETEHGVC 966
Query: 959 TNCQLDCHKLVKHIKPLSLEQRRKYI 984
C L+ +L ++ QR+ +
Sbjct: 967 QLCNLNAQELFLLLRNAPKSQRKNLL 992
>gi|395519477|ref|XP_003763875.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Sarcophilus harrisii]
Length = 1087
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 178/503 (35%), Positives = 271/503 (53%), Gaps = 39/503 (7%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L E DE++ LP+ L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAIAIA +
Sbjct: 18 LKSEHEDELLF-LPEKLRARLLPFQKDGITFALKRDGRCMVADEMGLGKTIQAIAIAYFY 76
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+ +L+V P+ LR W EE+E+W+P P +I ++ V +V V+ Y +
Sbjct: 77 KNEWPLLIVVPSSLRYPWTEEIEKWIPELGPHEIIII--QNKTDVGRISTSKVTVLGYGL 134
Query: 301 LHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
L K +I+ Q++ ++I+DESH+++ S+ S K +L V +R +LL+GTP
Sbjct: 135 LTTDAKLLIDTLYKQNFKVVIIDESHYMK-SRNASRS---KILLPVVQNSRRAILLTGTP 190
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNV 415
+L RP ++F QI+ L+P G ++AK YC+ Y G+ Q D L EL+
Sbjct: 191 ALGRPEELFMQIDALFPKQFGTWT-EYAKRYCNAHI--RYFGKRAQWDCRGASNLNELHQ 247
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL +MIRRLK +L QLPPK RQ I L V+AK + EK + P
Sbjct: 248 LLS-NIMIRRLKTEVLTQLPPKIRQRIPFDLPS---VAAKELNTSFEEWEKLI---RAPH 300
Query: 476 DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
S +G ++ +++ IAK ++++ + + ++D S K
Sbjct: 301 SGSTETGSHFFQAMGLMTRMFKQTAIAKAGAVKDYIKM---MLQND----------SLKF 347
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++FAHHL +L E E ++RIDG+ +R V+ FQ E ++AI+ I A G
Sbjct: 348 LVFAHHLSMLQACTEAAIESKARYIRIDGSVPSSERVYLVNQFQKDPETRVAILSIQAAG 407
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
GL F++A +V+F EL P + QAEDRAHR GQ+S++N++ A T D W LN+
Sbjct: 408 QGLTFTAANHVIFAELYWDPGHIKQAEDRAHRIGQSSSINVHYLIANGTLDSLMWGMLNR 467
Query: 654 SLRCVSSATNGKYDALQEIAVEG 676
S NG+ + L+ A EG
Sbjct: 468 KAIVTGSTLNGRKEKLE--AEEG 488
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K + Q I PLC CQ+ TCKS N ++ FC+ C EE+ +R++ +LR ++
Sbjct: 906 KGFLQAMDIKGNPLCLHCQQPTCKSDQQYNMSAWDSRFCSQKCQEEFWIRSNNSYLRAKV 965
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 966 FEIEHGVCQLCNLNAQELFLSVRDAPKNQRKNLL 999
>gi|302775146|ref|XP_002970990.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
gi|300160972|gb|EFJ27588.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
Length = 692
Score = 267 bits (682), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 266/503 (52%), Gaps = 56/503 (11%)
Query: 186 VDEMIG---KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
V ++IG +P L ++PFQ EGV+F L GGR LIADEMGLGK++QAIA+ +C
Sbjct: 162 VSDLIGYYKNIPGHLESSLMPFQQEGVQFALHHGGRALIADEMGLGKSVQAIAVVSCLRD 221
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF------------GHRNNPVHLTRF 290
+LV+ P+ LR+ WA L+ WL DI +V H L
Sbjct: 222 YWPVLVIVPSSLRIHWATMLKTWLEI-RSCDITIVLSQGTGSSQGYTIAHSQGKKVLQLG 280
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
+ISY M+ +L ++ ++I DESH+++ ++ + A + + K K V
Sbjct: 281 GLFNIISYDMVSKLPVD----NFKVVIADESHYIK----NAQAKRTNACVPIIQKAKYAV 332
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
LL+GTP+LSRP ++F Q+ L P + +++ + YC YQG
Sbjct: 333 LLTGTPALSRPVELFKQLEALQPSVYSDF-HEYGQRYCSGSHFGIYQG--------ASNR 383
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG---VINDSEKD 467
EEL+ LLK TVMIRRLK +L +LP K R+ + L L +A + I + ++
Sbjct: 384 EELHALLKSTVMIRRLKNDVLSELPEKCREQVFLSLDMKSTRQLRALINELKSIREKMQN 443
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+T +T K E + KI Y E + K+ +++LS + E++
Sbjct: 444 STESETEKLKREEK-----VLITKI-YAESAVVKVPAVQDYLS---TMLETNC------- 487
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K ++FAHH +++G+ E + +K + F+RIDG+T P RQS V FQ + +V+ A++
Sbjct: 488 ----KFLVFAHHHTMVNGIDEHLKKKNVEFIRIDGDTSPVIRQSMVDKFQNNEKVRAAVL 543
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
I A G+GL +SA V+F E+ +P ++QAEDRAHR GQ S+VNIY A DT D+
Sbjct: 544 SIRAAGLGLTLTSASTVIFAEMTWTPGDLIQAEDRAHRIGQRSSVNIYYLHAPDTIDDFI 603
Query: 648 WQNLNKSLRCVSSATNGKYDALQ 670
W+ +++ L + NG+ + ++
Sbjct: 604 WETIHRKLGNLGQVLNGREETMR 626
>gi|82596817|ref|XP_726418.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481821|gb|EAA17983.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 875
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 193/644 (29%), Positives = 328/644 (50%), Gaps = 65/644 (10%)
Query: 74 VRLEICSPDSFSVTPLAIEGFVYPGEEECL-RRLGQWLSDVMPSHYTQNNSGGKACV-YK 131
V EI + DSF + Y + + + L + LS+ P+ NN +CV ++
Sbjct: 148 VAFEIFNSDSFKIVQKDNNNKKYSNFKNFVPKELFKILSEFNPTLKKINNY---SCVTFE 204
Query: 132 LRDYNPVLTCLKNSAGI--EVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEV---- 185
Y VL L I + IP L + S + + L++ +
Sbjct: 205 SDKYEYVLNNLAEKCTILGGIHSIPNFLLKCFQNYSKFSQPQKISEVTANILTNTMCSYT 264
Query: 186 ---VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
D + L + L + + FQ EGV FGL++ GR LI DEMGLGKTLQA+A+ A +
Sbjct: 265 KVHYDNLNNLLGEKLSEELKNFQKEGVHFGLKKNGRVLIGDEMGLGKTLQALALMAFYNK 324
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
+V+CP+ +R W ++ RWLP + + V ++ + + R ++++ISY ++
Sbjct: 325 DWPFIVICPSSIRFQWKDQALRWLPHLIEENEICVI--KSGKMDIPRNTKMIIISYELIT 382
Query: 303 RLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ K + + ++ DESH+++ SKRT KA++ + KR VLLSGTP+L++
Sbjct: 383 KNDK--YQNKYKCIVCDESHYLKNSFSKRT------KAIVPIIKSAKRCVLLSGTPALNK 434
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
P +++ Q++ + P L +F YC K Y ++ ++ EEL++ L T
Sbjct: 435 PSELYEQVSSIIPNLFNYN--EFCDRYC-YKDKNIYTRKI--EYVGCKHTEELHLFLTNT 489
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRL---------LLKRSEIVSAKAAVGVINDSEK---DA 468
+MIRRLK+ +L +LP K R I + +L S+ + +K + IND +
Sbjct: 490 IMIRRLKKDVLKELPDKLRSKIPIEIPPNELSEILIYSKKLESKKNIN-INDLDNINLSR 548
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
ND + +++ +L K++ G AK+ +E+++ D D+
Sbjct: 549 FNDFNSNRDNNDEENITISQLFKMT----GYAKVKAIKEYITY---------LIDADI-- 593
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K ++F HH V+D + EF+ EK +GF+R+DG T R+ + +FQ +++IA++
Sbjct: 594 ---KFLLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYIKNFQSDEKIRIALLS 650
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESH 647
ITA GVGL+ ++A VVF EL P M+QAEDRAHR G T VNI+ A++T DE
Sbjct: 651 ITACGVGLNLTAANTVVFGELYWVPGQMIQAEDRAHRIGTTHDTVNIHYLVAQNTIDEVV 710
Query: 648 WQNLNKSLRCVSSATNGKYDAL--QEIAVEGVSYLEMSDKTDRG 689
W+ +N+ +++A NG D+L +E++ L++++ T++
Sbjct: 711 WKIINRKWNTLTTALNGTEDSLNVKEVSKFDQFMLDLTNDTNKS 754
>gi|449675654|ref|XP_002156270.2| PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like
[Hydra magnipapillata]
Length = 921
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 271/507 (53%), Gaps = 54/507 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LPK + + FQ +G+RFG++ GR LI DEMGLGKTLQAIAIA F +L++ P+
Sbjct: 13 LPKQIRRSLTNFQKKGIRFGIKMKGRVLIGDEMGLGKTLQAIAIAYYFYEKWPLLIIAPS 72
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH--------RL 304
LR +W ELE WLPF LP DI+++ + + +V +ISY ++ ++
Sbjct: 73 SLRYNWVNELEDWLPFLLPGDINMIRSFAD--LSQMFVAKVTIISYGLISISHSHKNAKV 130
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + ++ ++IVDESH ++ K K +L+ ++ ++LLSGTPSLSRP ++
Sbjct: 131 SDLIAKSNFGVVIVDESHFLKSMKTV----RTKVILNSLKRIPHVILLSGTPSLSRPEEL 186
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCD--VKTVQGYQGQLFQDF-SKGV-RLEELNVLLKQT 420
+ Q+++L P +DF + +C +TV+G GQ+F F ++G LE+LN LL+
Sbjct: 187 YPQLHLLHPTKFNNF-HDFGERFCGGYFETVRGRGGQIFNSFQTRGASNLEDLNRLLRN- 244
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
VMIRRLK +L +LP KRR ++ + E K ++ D + K +
Sbjct: 245 VMIRRLKNEVLTELPSKRRS--KIFFEIPESNKYKKSI--------DEQFKQIRKVLKQL 294
Query: 481 DDSGACCRLGKISYQE--------LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+S L Y + +AK ++++ D+ ++ NK
Sbjct: 295 KNSEDGFFLSAFDYNQPFNQLFCDTALAKAGAVQKYI------------CDL-IDGMPNK 341
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++F H+ ++ +QE + +K + ++ I G+ P R V +FQ + E ++AI+ I A
Sbjct: 342 FLVFCFHMTMVQAIQETLVQKKVKYICITGSVPPVQRGHLVETFQSNKEYRVAILSIQAA 401
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
GL ++A +VVF EL +P ++LQAEDR HR GQ +AV I+ A+ T D+ W L
Sbjct: 402 STGLTLTAADHVVFAELHHTPGVLLQAEDRCHRIGQKNAVQIHYLLAQGTIDDILWTMLQ 461
Query: 653 KSLRCVSSATNGKYDALQEIAVEGVSY 679
+ + ++A NGK + EI+++ Y
Sbjct: 462 RKVMVTTAALNGK---ISEISMDENDY 485
>gi|340369960|ref|XP_003383515.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Amphimedon queenslandica]
Length = 710
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 250/465 (53%), Gaps = 41/465 (8%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
+ ++ FQ EG+ + ++R GRCL+AD+MGLGKT+QAIA+A+ + S +LVVCP+ L++
Sbjct: 174 IYSTLMDFQKEGIEYIIQRQGRCLLADDMGLGKTIQAIAVASYYRSDWPLLVVCPSSLKI 233
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
SWAE +RW+P DI+++ + L V +ISY +L ++ K E +
Sbjct: 234 SWAEAFQRWIPSLSKKDINVIMTMKCPTKGL-----VTIISYDLLSKMSKQFKEMGPGFV 288
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I DESH ++ K KA + + K KR +LLSGTP+LSRP +++ QI L
Sbjct: 289 IADESHFLKNYKTARS----KATVPLIKKAKRALLLSGTPALSRPIELYTQIASL-DKQF 343
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPP 436
+ D+ K YC G Q + DFS + EL + ++Q +MIRRLK +L QLP
Sbjct: 344 TLSIIDYGKRYC-----SGAQNKFGWDFSGSSNMSELQLFMEQKLMIRRLKIDVLDQLPS 398
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
K+RQ + LL AK + + K T DK + A L + +
Sbjct: 399 KQRQTV-LLDPSMTKGRAKEWKELQTELSKVPTLDKKTR-------KAALLPL----FSK 446
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
G+ KL ++++ ID K+++FAHH +V+DG+ + + +K
Sbjct: 447 TGLMKLPAVKDYI--------------IDQLQGDRKLLVFAHHKQVMDGICQSLRDKKYP 492
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
FVRIDGNT RQ FQ + +A++ ITA GL ++A V+F EL +P ++
Sbjct: 493 FVRIDGNTASELRQQYCDRFQHDTKCLVAVLSITAANTGLTLTAASCVIFAELFWNPGVL 552
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+QAEDR +R GQ ++VNIY A+DT D+ W + + L+ ++ A
Sbjct: 553 VQAEDRVYRIGQHNSVNIYYLVAQDTADDYIWPMVRRKLKVLNEA 597
>gi|256073537|ref|XP_002573086.1| harp (smarcal1)-related [Schistosoma mansoni]
gi|353232452|emb|CCD79807.1| harp (smarcal1)-related [Schistosoma mansoni]
Length = 695
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 184/624 (29%), Positives = 312/624 (50%), Gaps = 71/624 (11%)
Query: 120 QNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPE 179
Q +S + + L +YN + +KN + +E +P+ + + K S+ G + +
Sbjct: 105 QYDSQTRRWSFDLSEYNEFVKKVKNIDELHLEELPYAVIKIFRK-RISMKPGA-DDLKDH 162
Query: 180 HLSDEVVDEMI-GKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
+DE+ + ++P LL + PFQ +GV L+R GR L+AD+MGLGKT+Q++AIA+
Sbjct: 163 DNNDEIDHSTLKDRIPDDLLATLFPFQKDGVCLALKRSGRVLLADDMGLGKTIQSLAIAS 222
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADI-HLVFGHRNNPV-----HLTRFPR 292
+ S +L++ P+ +R SW +++ RWL L ++ H+ + + P
Sbjct: 223 AYYSEWPLLIITPSSVRFSWRDQIIRWLGKPLNLNLTHITVVNSGKDIMDDWDSFNSSP- 281
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352
+ +ISY ++ R K ++++ + ++I DESH ++ K KA + KR++LL
Sbjct: 282 ITIISYDLMSRYGKELLKRRYGVVIADESHFIKNIKAA----RTKAATPILKWAKRVILL 337
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV-QGYQGQLFQDFSKGVRLE 411
SGTP++SRP ++F QI+ + P L ++F YC K G+ D+S +
Sbjct: 338 SGTPAMSRPAELFPQISAISPNLFQGGFHEFGLRYCSAKECPWGW------DYSGCSNMT 391
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
EL ++L++++MIRR+K +L QLPPKRR+++ L V K +G + A
Sbjct: 392 ELQLVLEKSIMIRRVKADVLSQLPPKRRELVVL----DPSVIKKGNLG------RHAKTM 441
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
T K S + S + E G KL +++ +D+ +
Sbjct: 442 LTDKLSSKEKRSALFEY-----FHETGSVKLPAIEQYV--------------LDLIECGH 482
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHH VLD + + +SEK I F+RIDG T R FQ ++ ++A++ ITA
Sbjct: 483 KFLLFAHHTDVLDSLDKLLSEKSIRFIRIDGRTNSEQRSVVCQIFQKEDDCRVALLSITA 542
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
G GL ++A V+F EL +P ++QAEDRA+R GQ +V I A+ T D+ W +
Sbjct: 543 AGTGLHLTAANLVIFAELFWNPGALVQAEDRAYRIGQMDSVLIRYLIAEQTADDFIWPLV 602
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVP 711
+ L +S A + M+D T R + TL+Q D F++
Sbjct: 603 ERKLDVLSKAGLNR------------ETFRMADSTTRLGSN-TLEQQKILDYFKK----- 644
Query: 712 ESSEASDFRAINTNDEITAKMNDK 735
E +DF D +T+ +N++
Sbjct: 645 ---ELNDFEEWENVDSVTSIINEQ 665
>gi|350402620|ref|XP_003486546.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Bombus impatiens]
Length = 704
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 184/599 (30%), Positives = 305/599 (50%), Gaps = 82/599 (13%)
Query: 130 YKLRDYNPVLTCLKN-SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVD- 187
+ L+DY V+ + N + I++ G+P L + K S++T E++ +D
Sbjct: 152 FLLKDYETVIEKVINFKSDIQITGLPKPVLQIFRKNDTSMNT--------ENIDLLDIDP 203
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+++G L +PFQ EGV +G+ +GGRC+IAD+MGLGKT+QA+ IA F +L
Sbjct: 204 QLVGNL--------MPFQREGVCYGISKGGRCMIADDMGLGKTIQALGIAHYFRKNWPLL 255
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+V PA +R WAE + +LP +PA F + + + ++ +V+ +Y +L R +
Sbjct: 256 IVTPASVRYQWAEAIYTFLP-SVPAHYIHQFANTKDCIDSSK---IVITTYDLLVRAMDT 311
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
Q + +I+DESH ++ K A V + + +VLLSGTP+LSRP +++ Q
Sbjct: 312 FERQIFGFVILDESHALKSLKTA----RFNAAQCVVLQARHVVLLSGTPALSRPMELYSQ 367
Query: 368 INMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
IN++ P +G +Y YC KT G+ DFS ++EL +LL++T +IRRL
Sbjct: 368 INLIMPNFMGYQEYGI--RYCAGEKTSYGW------DFSGSSNMQELQLLLRRTCVIRRL 419
Query: 427 KQHLLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
K +L QLP K+R++I L L+K V K V + E++ N + H
Sbjct: 420 KNDVLNQLPAKKREVIILDPGLIK----VGTKEMVEISKKLEREVLNGMEKHRTLLH--- 472
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
Y E G+AK +++S + K IIFAHH V+
Sbjct: 473 ---------YYNESGVAKQKAICDYIS--------------KLFMNKQKFIIFAHHQNVM 509
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
D + + I ++RIDG T P R+ + FQ ++ +A++ ITA G+ +SA+
Sbjct: 510 DAICDVAESMDIKYIRIDGKTNPERRKYQIDQFQNCDDCTVAVLSITAANAGITLTSAKL 569
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VVF EL +P ++ QAEDR HR GQ ++V I AK T D+ W + K + ++
Sbjct: 570 VVFAELFWNPGILCQAEDRVHRIGQDNSVIIQYLVAKQTADDYLWPLIQKKMNVLNEVGL 629
Query: 664 GKYDALQEIAVEGV----------SYLEMSDKTDRGSEDLTLD----QVASSDQFQELM 708
+ +L++I V S+++ S K +E++T + Q +++++ +EL+
Sbjct: 630 DQNFSLKDIDVTVQAFSSEQKTLDSFMDNSQKIVHSNENVTKNTSQSQFSTTEELKELL 688
>gi|334329860|ref|XP_001370015.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Monodelphis domestica]
Length = 1416
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 264/501 (52%), Gaps = 35/501 (6%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L E D+++ LPK L +LPFQ G++F L+R GRC++ADEMGLGKT+QA+AIA +
Sbjct: 18 LKTEFEDQLLF-LPKKLRARLLPFQKNGIKFALKRDGRCMVADEMGLGKTIQAVAIAYFY 76
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+ +L+V P+ LR W EE+E+W+P P +I ++ + +V V+ Y +
Sbjct: 77 KNEWPLLIVVPSSLRYPWTEEIEKWIPELGPQEIVII--QNKTDIGSISTSKVTVLGYGL 134
Query: 301 LHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
L K +I+ Q++ ++I+DESH+++ + K +L + +R +LL+GTP
Sbjct: 135 LTTDAKLLIDTLYNQNFKVVIIDESHYMK----SRNASRSKILLPIIQNSRRAILLTGTP 190
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNV 415
+L RP ++F QI+ L+P G ++AK YC+ Y G+ Q D L EL+
Sbjct: 191 ALGRPEELFMQIDALYPKRFGTWT-EYAKRYCNAHL--RYFGKRAQWDCRGASNLGELHQ 247
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL +MIRRLK +L QLPPK RQ I L + + + +D
Sbjct: 248 LLS-NIMIRRLKNEVLTQLPPKIRQRIPFDLPSTAAKELNTSFEEWEKLMRAPHSDANKT 306
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
S G R+ +++ IAK ++++ + + ++D K ++
Sbjct: 307 GSHFFQVMGLMTRM----FKQTAIAKAGAVKDYIKL---MLQNDLL----------KFLV 349
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHHL +L E E + ++RIDG+ +R V+ FQ + ++AI+ I A G G
Sbjct: 350 FAHHLSMLQACTEAAIESKVRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQG 409
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L F++A +V+F EL P + QAEDRAHR GQ+S+VNI+ A T D W LN+
Sbjct: 410 LTFTAATHVIFAELYWDPGHIKQAEDRAHRIGQSSSVNIHYLIANGTLDSLMWGMLNRKA 469
Query: 656 RCVSSATNGKYDALQEIAVEG 676
S NG+ + L+ A EG
Sbjct: 470 IVTGSTLNGRKEKLE--AEEG 488
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K + Q PLC CQ+ TC+S ++ FC+ C EE+ +R++ +LR ++
Sbjct: 907 KGFLQAIDTEGNPLCLHCQQPTCQSDQQDKVNAWDSRFCSQKCQEEFWIRSNNSYLRAKV 966
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 967 FEIEHGVCQLCHLNAQELFLSLRDAPKHQRKNLL 1000
>gi|449275320|gb|EMC84192.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A [Columba livia]
Length = 964
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 280/534 (52%), Gaps = 55/534 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ L++ +EVE +P V++ + I R +D + D
Sbjct: 397 FLLEDYPKLMEALQSLVSVEVEPLPEA---VIQTFAAQIQ-------RSTSQTD-IPDAD 445
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + ++ ++PFQ EGV F + R GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 446 LSVVDSEIVTSLMPFQREGVNFAILRNGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVV 505
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P +++ ++N LT + +IS+ +L ++ K +
Sbjct: 506 TPSSVRFTWAEAFHRWLPSLSPGSTNVIVTGKDN---LTS-SLINIISFDLLSKMDKQL- 560
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++IVDESH ++ K +A + + +R++LLSGTP++SRP +++ QI
Sbjct: 561 KSTFQVVIVDESHFLKNIKTA----RCRAAMPLLKAARRVILLSGTPAMSRPAELYTQIA 616
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ P + + F YCD K + G+ D+S+ L EL +LL++++MIRRLK
Sbjct: 617 AVQPAFFPQF-HSFGLRYCDAKKMPWGW------DYSRSSNLTELKILLEESIMIRRLKS 669
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R++I +V+ + + + + A
Sbjct: 670 DVLSQLPAKQRKVI--------VVAPEGISAKTKAALAAEAKKMAKGYESKQQEKEALL- 720
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN-KMIIFAHHLKVLDGVQ 547
+ Y AK+ E++ +++ R N K ++FAHH VLD +
Sbjct: 721 ---LFYNRTAEAKIHSVIEYI--------------LELLERGNDKFLVFAHHKIVLDAIV 763
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ +K + ++RIDG+T +RQS FQ S + +A++ +TA +GL S+A VVF
Sbjct: 764 AELEKKRVEYIRIDGSTPSAERQSLCQKFQFSEKQIVALLSLTAANMGLTLSAADLVVFA 823
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
EL +P +++QAEDRAHR GQTS+VN++ AK T D+ W + K + + A
Sbjct: 824 ELFWNPGVLIQAEDRAHRIGQTSSVNVHYLVAKGTADDYLWPMIQKKIEVLGEA 877
>gi|403355431|gb|EJY77291.1| hypothetical protein OXYTRI_01078 [Oxytricha trifallax]
Length = 1135
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 302/551 (54%), Gaps = 73/551 (13%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
++ D++++ + KLP +++ + FQ EG++FG++R GR ++ADEMG+GKT+QA+ I+
Sbjct: 289 DYTKDQMLNICLDKLPNQMINKLFNFQKEGIQFGIKRHGRIILADEMGVGKTVQALGISY 348
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH------LVFGHRNNPVHLTRFPR 292
+ S +++ P+ L+ W EE+ +WLP DIH L ++ P+ +
Sbjct: 349 IYRSEWPLIIFAPSQLKSQWKEEILKWLP-----DIHSNTVSILDHAKQSWPIK----SQ 399
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIV 350
+V++SY + +L ++ + + I DE+H+++ +KRT KA++ + K KR++
Sbjct: 400 IVILSYEIAQKLSATIEGFQFKVFIADEAHYLKSYNTKRT------KALMPILMKAKRVL 453
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
L+SGTP +SRP +I++ I ++ P + ++FA+ YC+ Q YQ + S+
Sbjct: 454 LISGTPMISRPNEIYNIIKIVRPDITPFF-HEFAERYCNP---QNYQYGTCYNGSQCT-- 507
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA---KAAVGVIND---- 463
+ELN LL ++MIRRLK+ +L QLPPK RQ I + K + +S K +++D
Sbjct: 508 QELNFLLTSSIMIRRLKKTVLDQLPPKIRQKIEI--KTDQKISGQVFKLMNKILDDKDCL 565
Query: 464 ------SEKDATNDKTPKDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIA 516
EK ++ ++H+ S YQ G AK+ G E++ H V
Sbjct: 566 PRFLQTQEKLYLQNQEQNFENQHEVPVQKQEDHIFSIYQLTGTAKIPGIIEFIQ-HLV-- 622
Query: 517 ESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
+ +V K IIFA+H+ VLD ++ F+++K + F+RIDG+T R V F
Sbjct: 623 ------ECNV-----KFIIFAYHMNVLDAIEVFMNQKAVRFIRIDGSTSMNQRTLKVSQF 671
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
Q + +AI+GI + VGL+ +SA +VF E+ +PS+M QAEDRAHR GQ S+VNIY
Sbjct: 672 QTDDFCLVAILGIHSCAVGLNLTSASTIVFAEMFWTPSMMTQAEDRAHRIGQKSSVNIYY 731
Query: 637 FCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
A T D+ ++ L + + ++S+ +G ++I VE + D+ + DL
Sbjct: 732 LFAPQTIDDVLYRMLQEKHKILASSLDG-----EQIQVE---------QKDKVNRDLIAK 777
Query: 697 QVASSDQFQEL 707
+ ++F E+
Sbjct: 778 RAQQKNRFNEI 788
>gi|340711952|ref|XP_003394530.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Bombus terrestris]
Length = 703
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 185/602 (30%), Positives = 302/602 (50%), Gaps = 80/602 (13%)
Query: 130 YKLRDYNPVLTCLKN-SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L+DY V+ + N + I++ G+P L + K S++T N
Sbjct: 151 FLLKDYEAVMEKVINFKSDIQITGLPKPILQIFRKDDTSMNTENIN-------------- 196
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ + L+ ++PFQ EGV +G+ +GGRC+IAD+MGLGKT+QA+ IA F +L+
Sbjct: 197 -LLDIDPQLVKNLMPFQREGVCYGISKGGRCMIADDMGLGKTIQALGIAHYFRKNWPLLI 255
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA +R WAE + +LP +PA F + + + ++ +V+ +Y +L R +
Sbjct: 256 VTPASVRYQWAEAIYTFLP-SVPAHYIHQFANTKDCIDGSK---IVITTYDLLARAMDTF 311
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q + +I+DESH ++ K KA V + +VLLSGTP+LSRP +++ QI
Sbjct: 312 ERQIFGFVILDESHALKSVKTA----RFKAAQCVVLQACHVVLLSGTPALSRPMELYSQI 367
Query: 369 NMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N++ P +G +Y YC KT G+ DFS ++EL +LL++T +IRRLK
Sbjct: 368 NLIMPNFMGYQEYGI--RYCAGEKTSYGW------DFSGSSNMQELQLLLRRTCVIRRLK 419
Query: 428 QHLLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
+L QLP K+R++I L L+K V K V + E++ N + H
Sbjct: 420 NDVLNQLPAKKREVIILDPGLIK----VGTKEMVEISKKLEREVLNG-----VERHHTLL 470
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
Y E G+AK +++S + + K IIFAHH V+D
Sbjct: 471 Q-------YYNESGVAKQKAICDYIS--------------KLFMKKQKFIIFAHHQNVMD 509
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ + I ++RIDG T P R+ + FQ ++ +A++ ITA G+ ++A+
Sbjct: 510 AICDVAESMDIKYIRIDGKTNPERRKYQIDQFQNCDDCMVAVLSITAANAGITLTAAKLA 569
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL +P ++ QAEDR HR GQ ++V I AK T D+ W + K + ++
Sbjct: 570 VFAELFWNPGILCQAEDRVHRIGQDNSVIIQYLVAKQTADDYLWPLIQKKMNVLNEVGLD 629
Query: 665 KYDALQEIAVEGV----------SYLEMSDKTDRGSEDLTLD----QVASSDQFQELMKV 710
+ +L++I V S+ + S K +E+ T + Q +S+++FQEL+ +
Sbjct: 630 QNFSLKDIDVTVQAFRSEQKTLDSFTDNSQKIVHNNENATKNTSQSQFSSTEEFQELLDL 689
Query: 711 PE 712
E
Sbjct: 690 NE 691
>gi|242018235|ref|XP_002429584.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514551|gb|EEB16846.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 657
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 195/652 (29%), Positives = 315/652 (48%), Gaps = 86/652 (13%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQ---SATTASNRQDAWRLSKCRKFSTEPTHFPKS 57
M ++ +QR++ E NR AAL K+K Q S T++ + ++++ + +F K
Sbjct: 1 MNLSADQRKKIEENRAAALLKKKQFNQKTNSILTSNLTSSSNKINENINKNKITNNFFKK 60
Query: 58 ALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSH 117
N Q V + D F +A + P E + + L D +
Sbjct: 61 -----NVEKQETPYVNVTFSAINEDRF----IADMNYHAPSIE-VFKTIPGKLYDSVLKK 110
Query: 118 YTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCR 177
+T S KLR+ P + V IP NV + L C
Sbjct: 111 WTFPLSEHSNLTSKLRNLKP---------EVIVNAIP---DNVFKTL-----------CA 147
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
P+ E VD ++ K+L D ++PFQ+EGVRFG+++ GRCLIAD+MGLGKT+Q++ IA
Sbjct: 148 PDE--PEEVD--WSRIDKNLRDSLMPFQVEGVRFGIKKNGRCLIADDMGLGKTIQSLGIA 203
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
F + +L++CP+ +R W E ++ ++P P L+ G + +++ S
Sbjct: 204 CYFKNNWPLLIICPSSMRFPWQEAIKTFMPNINPTISVLISGKDS-----IYNEDIIITS 258
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
Y ++ +++ ++ + ++I DESH ++ +K + L + + R++LLSGTP+
Sbjct: 259 YDIMKICYENIRKKKFGVVIFDESHALKNNKSA----RTQVALQLCKNISRVILLSGTPA 314
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
LSRP +++ QI+ + P L+ YDF YC+ G + + +F+ LEEL + L
Sbjct: 315 LSRPLELYSQISAIDP-LIFPNFYDFGIRYCN-----GKKDKFGWNFTGSSNLEELEIFL 368
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K+ +M+RRLK +L QLP K R+I+ L + VS K +S
Sbjct: 369 KKRIMVRRLKSEVLAQLPSKIRKIVILNPNMVKSVSKKM----------------RQMES 412
Query: 478 DEHDDSGACCRLGKISYQEL-GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
G + ISY + G AKLS E++ D SNK ++F
Sbjct: 413 QFESQKGVEKQSTLISYYSITGNAKLSAVCEYIG--------------DKLENSNKFLVF 458
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
AHH VLDG+ + ++ K + ++RIDG +RQ FQ + K+A++ + A GL
Sbjct: 459 AHHSNVLDGICDLLNNKKVDYIRIDGTVSSENRQIKCQEFQSNPNCKVAVLSLKAANTGL 518
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+ AQ V+F EL +P ++QAEDRAHR GQ +V + AK T D+ W
Sbjct: 519 TLTEAQLVIFAELYWNPGELIQAEDRAHRIGQRDSVLVEYLIAKGTADDHLW 570
>gi|302757351|ref|XP_002962099.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
gi|300170758|gb|EFJ37359.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
Length = 616
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 169/490 (34%), Positives = 258/490 (52%), Gaps = 55/490 (11%)
Query: 186 VDEMIG---KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
V ++IG +P L ++PFQ EGV+F L GGR LIADEMGLGK++QAIA+ +C
Sbjct: 162 VSDLIGYYKNIPGHLESSLMPFQQEGVQFALHHGGRALIADEMGLGKSVQAIAVVSCLRD 221
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF------------GHRNNPVHLTRF 290
+LV+ P+ LR+ WA L+ WL DI +V H L
Sbjct: 222 YWPVLVIVPSSLRIHWATMLKTWLEI-RSCDITIVLSQGTGSSQGYTIAHSQGKKVLQLG 280
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
+ISY M+ +L ++ ++ ++I DESH+++ ++ + A + + K K V
Sbjct: 281 GLFNIISYDMVSKLP---VDNNFKVVIADESHYIK----NAQAKRTNACVPIIQKAKYAV 333
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
LL+GTP+LSRP ++F Q+ L P + +++ + YC YQG
Sbjct: 334 LLTGTPALSRPVELFKQLEALQPSVYSDF-HEYGQRYCSGSHFGIYQG--------ASNR 384
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG---VINDSEKD 467
EEL+ LLK TVMIRRLK +L +LP K R+ + L L +A + I + ++
Sbjct: 385 EELHALLKSTVMIRRLKNDVLSELPEKCREQVFLSLDMKSTRQLRALINELKSIREKMQN 444
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+T +T K E + KI Y E + K+ +++LS + E++
Sbjct: 445 STESETEKLKREEK-----VLITKI-YAESAVVKVPAVQDYLS---TMLETNC------- 488
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K ++FAHH +++G+ E + +K + F+RIDG+T P RQS V FQ + +V+ A++
Sbjct: 489 ----KFLVFAHHHTMVNGIDEHLKKKNVEFIRIDGDTSPVIRQSMVDKFQNNEKVRAAVL 544
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
I A G+GL +SA V+F E+ +P ++QAEDRAHR GQ S+VNIY A DT D+
Sbjct: 545 SIRAAGLGLTLTSASTVIFAEMSWTPGDLIQAEDRAHRIGQRSSVNIYYLHAPDTIDDFI 604
Query: 648 WQNLNKSLRC 657
W L C
Sbjct: 605 WYYFACFLEC 614
>gi|432934245|ref|XP_004081926.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Oryzias latipes]
Length = 893
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 173/576 (30%), Positives = 287/576 (49%), Gaps = 61/576 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY +L + A +EVE +P +++ + D P ++ +
Sbjct: 322 FSLTDYGGLLDLISGIAAVEVEPLPRA---IIQAFAARFDGSEARPS-------DIPEAD 371
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + +L ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + + +LVV
Sbjct: 372 LSSIDPALTSSLMPFQREGVNFAVAKQGRLLLADDMGLGKTVQAICIAAYYRNEWPLLVV 431
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P I++V ++ R V ++SY +L+R+ K
Sbjct: 432 APSSVRFTWAEAFRRWLPSLSPDCINVVVKAKDR----LRSGLVNIVSYDLLNRMDKQHP 487
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
Q + +LI+DESH ++ K KA L + KR++LLSGTP++SRP +++ QI
Sbjct: 488 GQPFNVLIMDESHFLKNMKTA----RCKAALPLLKAAKRVILLSGTPAMSRPCELYTQIL 543
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ P L + ++F YCD + + D+S L EL +LL+ +M+RRLK
Sbjct: 544 AVRPTLFPRF-HEFGLRYCDAR-----EKPWGWDYSGSSNLGELKLLLEDCLMLRRLKSE 597
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QLP K+R+++ + + +N K A + + + H
Sbjct: 598 VLSQLPAKQRKVVTV------------TIDGVNTRIKAALSAAAAELTRNHRSKIEEKEA 645
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+ Y AK E+++ D+ + R K ++FAHH VLD +
Sbjct: 646 LLVFYNHTAEAKQQAIMEYIT------------DMLESGR-EKFLVFAHHKSVLDHITSS 692
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+GI ++RIDG+T +RQ FQ S + +A++ ITA +G+ +A V+F EL
Sbjct: 693 FHHQGISYIRIDGSTPSAERQQLCEKFQYSTKTCVAVLSITAANMGITLHTADLVIFAEL 752
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV----------- 658
+P +++QAEDR HR GQT+ VNI+ AK T D+ W + + +
Sbjct: 753 FWNPGVLIQAEDRVHRIGQTNNVNIHYLVAKGTADDHLWPMIQAKMNVLEKVGLSESNLS 812
Query: 659 SSATNGKYDALQEIAVE-GVSYLEMSDKTDRGSEDL 693
+A N + + + + + G + LEM ++ ED+
Sbjct: 813 DNAQNSSFHSKEAGSFQDGKTILEMFQRSFSADEDM 848
>gi|328871601|gb|EGG19971.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
Length = 1331
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 276/498 (55%), Gaps = 44/498 (8%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++PK+LLD +LPFQ GV FG++ GRC+I DEMGLGKT+QA+ IA+ F S +L++CP
Sbjct: 537 RIPKALLDSLLPFQARGVLFGVQHNGRCMIGDEMGLGKTIQALGIASYFRSYWPLLIICP 596
Query: 252 AILRLSWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKSMI 309
+ LR +W++E++RW + DI ++ N+ L V ++SY ++ R+ +K +
Sbjct: 597 SSLRHNWSKEVQRWFRSDITQQDISIMMSGDNSADQL-----VNIVSYDLVTRVYKKKLA 651
Query: 310 EQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
Q + +I DESH+++ +KRTS AVL + +LL+GTP+LSRP +++ Q
Sbjct: 652 NQHFRAIICDESHYLKNVDAKRTS------AVLSLVQSATIRILLTGTPALSRPIELYPQ 705
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ L + K + DF K YC G +G+ DFS L EL+ LL+ +VMIRR K
Sbjct: 706 LAALDAPIFDKQE-DFGKRYC-----AGVKGRYGWDFSGNSHLAELHYLLR-SVMIRRHK 758
Query: 428 QHLLVQLPPKRR-QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
+L +LPPK R Q++ + + +++ + A V + S K++ K +E
Sbjct: 759 HSVLRELPPKHRSQVVVDVPRDHQLLYEQKAALVFSRSNKESMVRKGAAGENER---AHV 815
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
L Y G AKL+ + + + +I E+ K ++FAHH VL+G+
Sbjct: 816 MDL----YLLTGQAKLAAAKSYTT--QLILEN------------KKFLLFAHHSDVLNGL 857
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
++ I I ++RIDG+T P R++ V FQ + ++A++ ITA G GL +++ VVF
Sbjct: 858 EQEIRSHQISYIRIDGSTPPAVREANVTRFQNQPKCQVALLSITAAGTGLTLTASSLVVF 917
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL +P ++ QAEDR HR GQ + VNI+ K T D+ W + L + +G+
Sbjct: 918 AELYWTPGVLRQAEDRVHRIGQKNEVNIHYLIGKGTLDDRIWPMICNKLEVIGETLDGQE 977
Query: 667 DALQEIAVEGVSYLEMSD 684
+ L ++ LEM++
Sbjct: 978 EKLLTNHLDLRGALEMNE 995
>gi|326437103|gb|EGD82673.1| hypothetical protein PTSG_03334 [Salpingoeca sp. ATCC 50818]
Length = 884
Score = 262 bits (669), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 184/572 (32%), Positives = 285/572 (49%), Gaps = 80/572 (13%)
Query: 118 YTQNNSGGKACVYKLRDYNPVLTCLKNSAGIE--VEGIP-WVTLNVVEKLSHSIDTGRWN 174
Y ++ + V LR Y +LT L +E + G+P WV ++ + WN
Sbjct: 174 YDRDRTPVSGWVLPLRMYKTLLTKLHELTAVETRITGLPKWVLA--------AMHSSTWN 225
Query: 175 PCRPEHLS---DEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTL 231
H + ++ + + G++P LL +LP+QL GV +RR GR L DEMGLGKT+
Sbjct: 226 TLELLHSTVTPEQAYEALQGRVPLELLQKLLPYQLTGVLCAVRRSGRILWCDEMGLGKTV 285
Query: 232 QAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291
QA+ A + S +L+VCP+ L+L+WA E+ RWL A + +V R H
Sbjct: 286 QALVTALHYRSEWPLLIVCPSSLKLTWANEIHRWLGLGEDA-VQVVQNGREKLTHA---- 340
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVL 351
V ++SY + LR + ++ + ++I DE+H++ + + KA++ V KR +L
Sbjct: 341 -VCILSYDLARGLRTQVQQRKFRVVIADEAHYI----KNRQAARTKALVPVVQDAKRALL 395
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLFQDFSKGVRL 410
LSGTP+LS+P ++F Q+ L L + + F + YC+ T G+ D S
Sbjct: 396 LSGTPALSKPIELFQQLRALRRDLF-RVEIAFGERYCNSHMTAYGW----CHDGSSNE-- 448
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAA 457
EEL+ LL++TVMIRR K+ +L LPPK RR+I +L+ KR + +A A
Sbjct: 449 EELHTLLQRTVMIRRDKKGVLSSLPPKTRQTVVVDCSAKHRREISQLMKKRFHMDAAAVA 508
Query: 458 VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE 517
G D + H G +L +Q G AKL+ ++
Sbjct: 509 AG--------------RGDGEMH---GVTLKL----FQATGQAKLAACVTYV-------- 539
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
++ + KM++FAHH V+DG+ + + EK I VRIDG+T R FQ
Sbjct: 540 ------LEQLAKGVKMLLFAHHQPVMDGLMQALCEKSIRHVRIDGSTPSSLRNELATRFQ 593
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
++A++ ITA G GL +A VVF EL +P +LQAEDRAHR GQ AV++
Sbjct: 594 TDETCRVALLSITAAGTGLTLHAATLVVFAELFWNPGQLLQAEDRAHRVGQQCAVDVKYL 653
Query: 638 CAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
++T DES W+ + + + V A G + +
Sbjct: 654 ICRNTLDESMWEKVERKMAVVGRAVKGASETM 685
>gi|198430961|ref|XP_002124279.1| PREDICTED: similar to MGC115661 protein [Ciona intestinalis]
Length = 831
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 174/542 (32%), Positives = 283/542 (52%), Gaps = 55/542 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DYN +++ + + +E P L + + T D V+ E
Sbjct: 212 FHLTDYNQLVSSINKEQDLHLETFPSTLLQIFKSKISGAKT------------DSVLQEF 259
Query: 190 -IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ + + + ++PFQ EGV F L + GR L+AD+MGLGKT+Q+I IA+ + S+ +L+
Sbjct: 260 DLSHVDEKVETSLMPFQREGVNFALSKNGRILLADDMGLGKTVQSICIASYYRSSWPLLI 319
Query: 249 VCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+CP+ +RL W E L RWLP L D ++++ R+N + V VISY +L + +
Sbjct: 320 ICPSSVRLMWKESLLRWLPSQLEHDDVNVMLTGRDN---IPTNSLVTVISYDLLTKHQAR 376
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+ + IVDESH ++ K K+ V K ++LLSGTP+LSRP +++ Q
Sbjct: 377 FEAKKYKCAIVDESHFIKNFKTA----RAKSATAVLKHTKHLLLLSGTPALSRPSELYTQ 432
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
I+ L L + F YC+ K Q D+S + EL ++L++TVM+RR K
Sbjct: 433 ISTLRSDLFPYF-HQFGLRYCNAK-----QNTWGWDYSGSSNMTELRLILQETVMLRRTK 486
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV--INDSEKDATNDKTPKDSDEHDDSGA 485
+L QLPPK R+ + L ++ KA++ + ++ + A N K +++H G
Sbjct: 487 DDVLHQLPPKLRRTVAL-----DVSIEKASIKQRKLLEASQSAVNQKGLSAAEKH---GI 538
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
+ + E KL G + ++ +D+ +K ++FAHH VLD
Sbjct: 539 LLQY----FNETAKFKLPGIKSYV--------------LDLLEGGHKFLLFAHHKSVLDS 580
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
V+ +++KG ++RIDG+T RQ+ V FQ ++ K+A++ ITA +G+ SA VV
Sbjct: 581 VETDLNKKGCDYIRIDGSTPSERRQTEVARFQENSSCKVALLSITAANMGITLHSASLVV 640
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
F EL +P +++QAEDR +R GQ VN++ AK+T D+ WQ + K L +S A K
Sbjct: 641 FAELFWNPGILVQAEDRCYRIGQRDVVNVHYLIAKNTADDLIWQMIKKKLEVLSKAGLNK 700
Query: 666 YD 667
D
Sbjct: 701 TD 702
>gi|224054730|ref|XP_002191300.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Taeniopygia guttata]
Length = 963
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/533 (32%), Positives = 290/533 (54%), Gaps = 53/533 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ L + +EVE +P V++ + + R L+D + D
Sbjct: 399 FLLEDYPKLMEVLLSLVSVEVEPLPEA---VIKTFAAQLQ-------RSPSLTD-IPDAD 447
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + ++ ++PFQ EGV F + R GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 448 LSVVDSKIVTSLMPFQREGVNFAISRNGRLLLADDMGLGKTIQAICIAAYYQQEWPLLVV 507
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WA+ RWLP P +++ ++N LT + +IS+ +L R+ K +
Sbjct: 508 TPSSVRFTWAQAFHRWLPSLSPESTNVIVSGKDN---LTG-SLINIISFDLLSRMDKQL- 562
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++IVDESH ++ +K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 563 KSTFQVVIVDESHFLKNTKTA----RCQAAMPLLKAAKRVILLSGTPAMSRPAELYTQIA 618
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ P + + F YCD + + G+ D+S L EL +LL++++MIRRLK
Sbjct: 619 AVQPTFFPQF-HSFGLRYCDARKMPWGW------DYSGSSNLTELKILLEESIMIRRLKS 671
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R+++ + L E +SAK + +++K A +S + + G
Sbjct: 672 DVLSQLPAKQRKMVVVAL---EGISAKTKAALAAEAKKMAKG----YESKQQEKEGLL-- 722
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ + AK+ E++ + ES +NK ++FAHH +LD V
Sbjct: 723 ---VYFSRTAEAKIHSVVEYIL---ELLESG----------NNKFLVFAHHKIMLDAVAA 766
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +K I +RIDG+T +RQS FQL+ + +A++ +TA +GL +A VVF E
Sbjct: 767 ELKKKHIEHIRIDGSTSSAERQSLCQKFQLAEKHAVAVLSLTAANMGLTLCAADLVVFAE 826
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
L +P +++QAEDRAHR GQTS+VN++ AK T D+ W + + ++ + A
Sbjct: 827 LFWNPGILIQAEDRAHRIGQTSSVNVHYLVAKGTADDYLWPMIQEKIKVLGEA 879
>gi|225432202|ref|XP_002269671.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1 [Vitis
vinifera]
gi|297736823|emb|CBI26024.3| unnamed protein product [Vitis vinifera]
Length = 677
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 171/497 (34%), Positives = 271/497 (54%), Gaps = 53/497 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P + +LPFQ +G+RF L+ GGR L+ADEMGLGKTLQAIA+ C + +LV+ P
Sbjct: 176 RIPSYIETKLLPFQRDGIRFVLQHGGRVLLADEMGLGKTLQAIAVTTCVRDSWPVLVLTP 235
Query: 252 AILRLSWAEELERWLPFCLPA-DIHLVF---------GHRNNP------VHLTRFPRVVV 295
+ LRL WA +++WL +P+ DI +V G R P +HL +
Sbjct: 236 SSLRLHWASMIQQWL--NIPSSDILVVLSQWSGSNRGGFRIVPSNTKGTIHLDGV--FNI 291
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCS--KRTSEPEEVKAVLDVAAKVKRIVLLS 353
ISY ++ +L+K + E ++ ++I DESH ++ + KRTS A L V K + +LLS
Sbjct: 292 ISYDVVLKLQKILAESEFKVVIADESHFLKNAQAKRTS------ASLPVLQKAQYTILLS 345
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP+LSRP ++F Q+ L+P + + +++ YC +G +F + EEL
Sbjct: 346 GTPALSRPIELFKQLEALYPDVY-RNVHEYGNRYC--------KGGVFGMYQGASNHEEL 396
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ L+K TV+IRRLK+ +L +LP KRRQ + L L ++ A + + K+
Sbjct: 397 HNLMKATVLIRRLKKDVLSELPVKRRQQVFLDLDEKDMKQINALFRELEVVKSKIKASKS 456
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
++++ S + KI Y + AK+ ++L + E+ K
Sbjct: 457 KEEAESLKFSEKNL-INKI-YTDSAQAKIPAVLDYLG---TVVEA-----------GCKF 500
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+IFAHH ++D + +F+ +K +G +RIDG+T RQ+ V FQ + +K A++ I AGG
Sbjct: 501 LIFAHHQPMIDSIFQFLVKKKVGCIRIDGSTPSSSRQAFVTDFQEKDTIKAAVLSIKAGG 560
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGL ++A V+F EL +P ++QAEDR HR GQ S+VNI+ A DT D+ W +
Sbjct: 561 VGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVVQS 620
Query: 654 SLRCVSSATNGKYDALQ 670
L + +G + L+
Sbjct: 621 KLENLGQMLDGHENTLE 637
>gi|255080480|ref|XP_002503820.1| SNF2 super family [Micromonas sp. RCC299]
gi|226519087|gb|ACO65078.1| SNF2 super family [Micromonas sp. RCC299]
Length = 1445
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 215/717 (29%), Positives = 321/717 (44%), Gaps = 132/717 (18%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI 241
SDE VD+ + K+P L + PFQ GVRFGL+R GRCLI D+MG+GKTLQA+A+ +C++
Sbjct: 251 SDEEVDDAMRKIPSRLKRALFPFQEAGVRFGLKRRGRCLIGDQMGVGKTLQALALGSCYL 310
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF----------- 290
G +LV+ P +RL+WA ELERWLP P ++ LV +N R
Sbjct: 311 DEGPLLVIAPKSMRLTWARELERWLPDLRPKNL-LVCDSQNQATAPLRLMARAMRIRDEL 369
Query: 291 -------------------------------------PRVVVISYTMLHRLRKSMIEQDW 313
PRVVV++Y M L + W
Sbjct: 370 RRSRIDDDGDDEDDVGGSTDAIARMEAAQAAREILDQPRVVVVAYKMCQLLSAHIRSIRW 429
Query: 314 ALLIVDESHHVRCSKRTS-----EPEEVKAVLDVAAKVK-------------------RI 349
+IVDESH +R + S E E+ +L + K R+
Sbjct: 430 GAVIVDESHTLRTTPSLSGGDGCESEQTATILRMIRGSKPEYARVDPPETRGWRPISDRV 489
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL-FQDFSKGV 408
VL SGTPSL++P+D+++QI+ L GLLG K F YCD +Q + + G
Sbjct: 490 VLCSGTPSLTKPFDMYNQIDALRLGLLGDKKT-FMHAYCDF-----HQNRFGHHNVRGGK 543
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
R E VLL+ VMIRRLK + LP KRR + + + + ++ +A +G E+
Sbjct: 544 RFAEYQVLLR-NVMIRRLKSDVANDLPAKRRDKVYVDVTKDDMSAAWRHIG-----EQGR 597
Query: 469 TNDKTPKDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLS------IHPVIAESDGA 521
N + D D G G I+ Q +G+AK G EW+ I+E D
Sbjct: 598 VN----LEDDGVDCEGEPNSAGSIAKMQAIGLAKARGASEWIKDFLGIETGGDISERDWR 653
Query: 522 ----------ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--------GIGFVRIDGN 563
A D K +IFAHH V+D V++ + K + ++R DG+
Sbjct: 654 ELGLDEDQRRAYTDSLKEMPKTVIFAHHRLVMDYVEDKVLRKMPRDWDDANLPYIRFDGS 713
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T ++R + F+ + ++A++ +TAGGVG+DFS V+F+ELP + L+ QAEDR
Sbjct: 714 TPGQERDAGCDRFKNDDNCRVALVSVTAGGVGIDFSRGSVVIFVELPLA-HLVEQAEDRV 772
Query: 624 HRRGQTSAVNIYIFCAKDTT---DESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
HR+G V +Y A+ D ++++ SL A G +DA ++ V
Sbjct: 773 HRQGVADPVTVYYLVARGAGEWHDRKRLESIDVSLDTTRRAL-GDHDAADARGLD-VRNR 830
Query: 681 EMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTN---DEITAKMNDKLL 737
+ + G E + E P S D + T D A ++
Sbjct: 831 KSARGAGPGGESPPGESPPGESPPGE--SPPGESPGRDDLSAETETRLDWFNASSRERRC 888
Query: 738 --EESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTE 792
+E ++ +P DD S T R+HL+ G+ PL +SF P ++ TE
Sbjct: 889 GEDEERSYATPPPPDDLWFEYSGATQRVHLHGAADGS----APLGQSFDPNDVCRTE 941
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 67/193 (34%), Gaps = 53/193 (27%)
Query: 849 SSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICS----GSRKKEKE-YTQGW----- 898
S + GS RR PLP AEW+ V I + G ++ KE + GW
Sbjct: 1059 GSASTTRHGSGRR--------EPLPEHAEWRPVLIANVRGRGEPREAKEPVSLGWEDVSA 1110
Query: 899 ------TIN-DEPLCKLCQKTCKSKNA---------------------------KNAEYF 924
T+ PLC C K N +
Sbjct: 1111 DGTKKKTVPVGTPLCLKCMKPRDGANPLGDGAPDLDLDSMVHVRAFTQAIASGPRTVAST 1170
Query: 925 EDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSL-EQRRKY 983
DLFC+ +C S LR F + GVC C LDC LV+ I+ + + RR
Sbjct: 1171 ADLFCSEECAVLDSQTRSAAALRRACFERDRGVCATCGLDCDDLVRRIRVMRCQDDRRDA 1230
Query: 984 IVRVAPNVASRQN 996
++ P + R N
Sbjct: 1231 VLAAWPAMGHRGN 1243
>gi|324505946|gb|ADY42546.1| SMARCAL1-like protein [Ascaris suum]
Length = 696
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 167/478 (34%), Positives = 260/478 (54%), Gaps = 60/478 (12%)
Query: 195 KSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254
++L+D + PFQ +GV FG++R GR LIADEMGLGKT+QA+AI F S +L+VCP+ +
Sbjct: 226 RTLVDALFPFQRKGVLFGIQRRGRLLIADEMGLGKTIQALAIMRYFSSDWPLLIVCPSSV 285
Query: 255 RLSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
+ SW +++ +LP C+ L G P+ + V ++SY ++ RK ++E
Sbjct: 286 KFSWMNQIKTFLPSVNNMCI-----LEKGSDQLPMQKSA-STVAIMSYDLMVIKRKHLLE 339
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ ++ DESH ++ + + K D++ K R++LLSGTP+LSRP ++F QI +
Sbjct: 340 YAFQAIVFDESHMIK----DGQAQRTKVATDISKKALRVILLSGTPALSRPVELFSQIRI 395
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
+ P + + DFA YCD G QG+ + EEL ++L ++MIRRLK+ +
Sbjct: 396 IDPKIFPNFR-DFAIRYCD-----GKQGRFSFEAKGCTNSEELALILSNSIMIRRLKKDV 449
Query: 431 LVQLPPKRRQIIRLL-----LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
L LP KRR+++ L + S + SAKAA D D+
Sbjct: 450 LDDLPEKRREVVFLNDGSIDVNISNLRSAKAAYHGAADK-----------------DTKH 492
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAES---DGAADIDVNPRSNKMIIFAHHLKV 542
C +G Y E GIAK S+ I ++ +GA PR K+++FAHH V
Sbjct: 493 QCLVG--YYYETGIAKAK------SVASHIVDNFFYEGA------PR-RKVLVFAHHQVV 537
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LD + ++++KG+ +RIDG T + R+ FQ ++V +AI+ +TA G+G+ ++A
Sbjct: 538 LDTISMYVTKKGLRSIRIDGTTASKSREEQCRLFQEDDDVVVAILSMTAAGLGITLTAAT 597
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
VVF EL +P + QAEDRAHR GQT +V + A T D+ W + + L + S
Sbjct: 598 VVVFAELHWNPGTLKQAEDRAHRVGQTDSVFVQYLLANRTADDVMWPLIQRKLDVLGS 655
>gi|407036763|gb|EKE38321.1| helicase, putative [Entamoeba nuttalli P19]
Length = 956
Score = 260 bits (665), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 177/543 (32%), Positives = 285/543 (52%), Gaps = 69/543 (12%)
Query: 132 LRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIG 191
LR Y+ +++ LKN G ++ IP L + IDT EVVD +
Sbjct: 71 LRHYHNIVSQLKN-MGFSMKEIPNEVLQYFQDEIEGIDTS----------PQEVVD--MS 117
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++ + LL + PFQ++GV FG+R GRCLIADEMGLGKTLQAI+IA + + +LV+CP
Sbjct: 118 RIGEQLLFKLKPFQIQGVEFGIRHNGRCLIADEMGLGKTLQAISIAQYYKTDWPLLVICP 177
Query: 252 AILRLSWAEELERWLPFC-LPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ LR +W E+ + C D+ ++F + N P + RV ++SY + + + +
Sbjct: 178 SSLRTNWKNEI---MTNCKCYDDVVVMFSSKDLNKP-----WGRVTIVSYEIAAKHSQEI 229
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+++ + ++I DE H+++ S+ + + +L V + +LLSGT LSRP +++ Q+
Sbjct: 230 LDKQFKIVIADECHYLK----NSQSKRCRELLPVLVNAEHTILLSGTALLSRPSELYPQM 285
Query: 369 NML-WPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
L +P + + ++F YC+ K Q G+ D++ L EL++LL + VMIRRL
Sbjct: 286 QALRFP--IFSSFHNFGIRYCNAKVTQFGW------DYTGNSHLPELHILLSKFVMIRRL 337
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ +L +LP K R + + + + +I+ K + + + +K DK K + +
Sbjct: 338 KEEVLSELPDKERMEVVIEISQEDIIKMKD-LRLAAEIQKKKLGDKVEKFTKQ------- 389
Query: 487 CRLGKISYQELG----IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
I + EL AKL G +L +I E K+++F HH ++
Sbjct: 390 -----IQFVELYNMTCTAKLKGVCSFLD--KMIIEG------------KKLLVFGHHQEM 430
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LDG++ +I E I ++RIDG+T R V FQ ++IAI+ +TA G G+ SA
Sbjct: 431 LDGIETYIKENNIEYIRIDGSTNAPLRAKYVDRFQKEKRIRIAILSVTAAGTGITLHSAD 490
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
VVF EL +P ++ QAEDR HR GQ + V I+ K T D+ W L K L+
Sbjct: 491 TVVFAELYWTPGVLRQAEDRVHRIGQKNDVRIFYLIGKQTVDDLIWPLLEKKLKISGETL 550
Query: 663 NGK 665
+GK
Sbjct: 551 DGK 553
>gi|328875547|gb|EGG23911.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
Length = 1107
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/484 (32%), Positives = 262/484 (54%), Gaps = 36/484 (7%)
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ ++P +LL+ ++PFQL+G+ FG+ GRC++ DEMGLGKT+QAIAI+ + +L++
Sbjct: 360 LSRVPATLLNTLMPFQLKGLEFGVEHEGRCIVGDEMGLGKTVQAIAISYYYRKEWPLLII 419
Query: 250 CPAILRLSWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
P+ LRL WA+ L+++LP + +I+LV + L V +ISY + + +
Sbjct: 420 TPSSLRLVWADALDKFLPGIFKSGEINLVMSGKCGLNGL-----VNIISYDLCRTKLEDV 474
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ +++ ++I DESH ++ K + + V + AK R +LL+GTP++SRP +++ QI
Sbjct: 475 LAKNFKVVIADESHFIKDFKS----QRTQCVGKIMAKANRKLLLTGTPAISRPCELYQQI 530
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ + P LG Y F YC+ + ++ F + + +ELN L T+MIRRLK
Sbjct: 531 HCIAPFFLGWKDYVFR--YCNAYYDKFHRLNYFGNSNS----KELNTYL-NTIMIRRLKD 583
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN--DKTPKDSDEHDDSGAC 486
+L LP KRR+ I + +K+ ++ K +G I ++ N D+T +
Sbjct: 584 DVLSDLPEKRREKILVEIKKGDLRKIKKTMGDIQSAKNTIKNTGDRTEAARKTYSKKSLY 643
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
+L +++ G+ KL +L + DG K IIFAHHL VLDG+
Sbjct: 644 TKL----FRDTGLGKLGAIDRFLKDK--LEVFDG-----------KFIIFAHHLDVLDGI 686
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
+ + ++RIDGNT + R V+ FQ + ++ A++ +TA GL ++A V+F
Sbjct: 687 SNVLKSRNCEYIRIDGNTNVQTRADYVNLFQTDDTIRAAVLSLTAASTGLTLTAANLVIF 746
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL +P + QAEDRAHR GQTS+V I + DES W + + + +G+
Sbjct: 747 AELYWTPGTLFQAEDRAHRYGQTSSVLIQYLVGIGSVDESIWNMIEEKKDVLGRVLDGQG 806
Query: 667 DALQ 670
AL+
Sbjct: 807 SALE 810
>gi|156407998|ref|XP_001641644.1| predicted protein [Nematostella vectensis]
gi|156228783|gb|EDO49581.1| predicted protein [Nematostella vectensis]
Length = 532
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 277/541 (51%), Gaps = 62/541 (11%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY +++ ++ G+ +EG+P L++ K S P + LS E D
Sbjct: 39 FSLEDYETLMSASRDLVGVSLEGLPKTVLSLFTKSS---------PGTLKSLSTE--DIN 87
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L+ ++PFQ EGV F + + GR +IAD+MGLGKT+QAI +A+ + +LVV
Sbjct: 88 LNCVDTKLVSSLMPFQREGVAFCICQDGRAIIADDMGLGKTVQAICVASYYRKEWPLLVV 147
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +RL+W + +WLP P I++V ++N + +ISY +L + +
Sbjct: 148 APSSMRLTWKQAFIKWLPSLDPQSINVVLTGKDNVTA----GLINIISYDLLTKFVGKLQ 203
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
E+ + ++I DESH ++ +K K L + R++LLSGTP+LSRP +++ QI
Sbjct: 204 EKRFRVIIADESHFIKNNK----AARTKTFLPILKAATRVILLSGTPALSRPEELYTQIC 259
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ P + + ++F K YC G + + D+S +EEL ++L+Q++MIRRLK+
Sbjct: 260 AVNPRMF-PSFHEFGKRYC-----AGVENRWGWDYSGASNMEELQLVLEQSIMIRRLKKD 313
Query: 430 LLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
+L QLP KRRQ++ L L+K ++ A V +T K ++H GA
Sbjct: 314 VLHQLPSKRRQMVLLDPSLIKVKPLMKAAKEV-------------ETAKKKEQH---GAL 357
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
+ E +K++ R ++ +D+ +K ++F HH +LD +
Sbjct: 358 LNY----FCETSASKIAAVRNYV--------------LDLLEGGHKFLVFGHHQDMLDAI 399
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
+ + K ++RIDG T RQ FQ +A++ ITA GL + VVF
Sbjct: 400 SDCLMHKKYSYIRIDGKTPSSKRQMLCDQFQKDKNTVVAVLSITAANTGLTLTEGTAVVF 459
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
EL +P ++QAEDR +R GQ ++VNI+ AK T D+ W + L +S A K
Sbjct: 460 AELFWNPGALVQAEDRVYRIGQKNSVNIHYLVAKGTADDYLWPLIQHKLDVLSKAGLTKD 519
Query: 667 D 667
D
Sbjct: 520 D 520
>gi|303288742|ref|XP_003063659.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454727|gb|EEH52032.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 518
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 252/470 (53%), Gaps = 44/470 (9%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
V+ ++P++L D + PFQ EGV+FGL RGGR LI D+MGLGKT+QA+A+ +C+
Sbjct: 87 VEAAYERIPETLRDAMFPFQREGVKFGLARGGRVLIGDQMGLGKTIQALALVSCYPEDWP 146
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
LV+ P LR +W L RWL + G N ++ F ++ Y+++ +L
Sbjct: 147 CLVLVPTSLRDAWESALRRWLGVRPSLIAAVASGADGNKINGAAF---AIVPYSLVGKLG 203
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + + + +++ DESH ++ K + KAV+ + +R + L+GTP+LSRP +++
Sbjct: 204 EKLARKKYQIVVCDESHFLKDGK----AQRTKAVVPLIKAARRAICLTGTPALSRPIELY 259
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
Q+ L P + K +FA+ YC G+QG D EL ++ + VM+RR
Sbjct: 260 TQLEALRPNVFTKFN-EFAQRYCSGSRF-GWQGCTNAD--------ELFGVISRLVMVRR 309
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK+ +L QLPPK R+ + L L +SE +S A+ ++ ND + DE
Sbjct: 310 LKKDVLTQLPPKTREQVFLPLPKSEALSEVKAI-------RERLNDIKESNRDEG----- 357
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
RL Y AK+ +E+L DG AD K + FAHH ++LD
Sbjct: 358 --RLMNQLYVASAKAKIGPVQEYLETL-----IDGGAD--------KFLFFAHHAELLDA 402
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+ ++ I +RIDG+T R V +FQ + V++A++ I A GVGL ++A V+
Sbjct: 403 AAATLKKRKIQHIRIDGSTPSTARGKLVETFQTVDAVRVAVLSIKAAGVGLTLTAASAVI 462
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
F EL +P ++QAEDRAHR GQ ++V++ CA++T D+ W ++ L
Sbjct: 463 FGELSWTPGEIVQAEDRAHRIGQVNSVSVQFLCARNTVDDIMWGSVQNKL 512
>gi|167524411|ref|XP_001746541.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774811|gb|EDQ88437.1| predicted protein [Monosiga brevicollis MX1]
Length = 1057
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 176/565 (31%), Positives = 290/565 (51%), Gaps = 70/565 (12%)
Query: 171 GRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKT 230
G P + + ++ +LP L +LPFQ E V FG+ R GR LI D+MG GKT
Sbjct: 38 GALAPTTEASTTGTIARDLADRLPVRLWQGLLPFQREAVVFGVARNGRILIGDQMGCGKT 97
Query: 231 LQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
+ AIA+A F +L+V P +R SW +ELE WL F P DI +V ++ + R
Sbjct: 98 ISAIALACAFRQEWPVLIVAPTSVRGSWVDELEEWLRFLTPNDICVVRSGKD----VARL 153
Query: 291 -PRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
VVV++Y +L++ + ++ Q + ++I+DESH+++ S+ + +++L + + +
Sbjct: 154 DAAVVVVTYGLLNQSTMMDALAAQRFKVVIIDESHYLKNSR----AKRTQSLLPILRRAR 209
Query: 348 RIVLLSGTPSLSRP----------------------YDIFHQINMLWPGLLGKAKYDFAK 385
R+++LSGTP+L+RP +++ Q++ L PG LG + +A+
Sbjct: 210 RVIMLSGTPALARPEKQEERARESRLASAHFPQMRAQELYTQVDALKPGYLG-SWTSYAQ 268
Query: 386 TYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
YCD K + Y G D L EL+ L+ +MIRRLK+ +L QLPPKRRQ + L
Sbjct: 269 RYCDRK--RNYFGGW--DTKGASNLPELHDKLR-AIMIRRLKKDVLSQLPPKRRQRVLLD 323
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
+ +++ + K + P D++ S A L + Y+E G AK+
Sbjct: 324 VGEADLKRVQQI--------KQQLDKLDPVDAESKMQSHA---LLQSLYKETGAAKIPAV 372
Query: 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
RE++ + +K ++FA+HL VLD V + + ++ I G+T
Sbjct: 373 REYIR--------------GLCQTGDKFLVFAYHLDVLDAVHVEVVAAKLDYIMIRGDTP 418
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
+RQ+ V FQ ++ ++AI+ +TA G GL ++A V+F EL +P ++ QAEDR HR
Sbjct: 419 VSERQAGVRKFQGNDSCRVAILSMTAAGQGLTLTAASTVIFAELHWTPGIIEQAEDRVHR 478
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685
GQ VN+ A+ T D++ W +++ + VSSA +G+ + L+ A + EM D
Sbjct: 479 IGQGDPVNVQYLVARRTLDDTMWNIVDRKVGVVSSALDGQRERLR--AKNSTAQREMGDL 536
Query: 686 TDRG----SEDLTLDQVASSDQFQE 706
R SED+ +D +E
Sbjct: 537 RQRNSLVDSEDVREGAAQVTDMLRE 561
>gi|68076919|ref|XP_680379.1| DNA helicase [Plasmodium berghei strain ANKA]
gi|56501303|emb|CAH95084.1| DNA helicase, putative [Plasmodium berghei]
Length = 835
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 186/633 (29%), Positives = 319/633 (50%), Gaps = 41/633 (6%)
Query: 74 VRLEICSPDSFSVTPLAIEGFVYPGEEECL-RRLGQWLSDVMPSHYTQNNSGGKACV-YK 131
V EI + DSF + Y + + + L + LS+ P+ NN +CV ++
Sbjct: 147 VAFEIFNSDSFKIVQKDNNNKKYSNFKNFVPKELFKILSEFNPTLKKINNY---SCVTFE 203
Query: 132 LRDYNPVLTCLKNSAGI--EVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEV---- 185
Y VL L I + IP L + S + + L++ +
Sbjct: 204 SDKYEYVLNNLAEKCTILGGIHSIPNFLLKCFQNYSKFSQPQKISEVTANILTNTMCSYT 263
Query: 186 ---VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
D + L + L D + FQ EGV FGL++ GR LI DEMGLGKTLQA+A+ A +
Sbjct: 264 KVHYDNLNNLLGEKLSDELKNFQKEGVHFGLKKNGRVLIGDEMGLGKTLQALALMAFYNK 323
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLP-ADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+V+CP+ +R W ++ RWLP + DI ++ ++ + + R ++++ISY ++
Sbjct: 324 DWPFIVICPSSIRFQWKDQALRWLPHLIEEKDICVI---KSGKMDIPRNTKMIIISYELI 380
Query: 302 HRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+ K + + ++ DESH+++ SKRT KA++ + KR VLLSGTP+L+
Sbjct: 381 TKNDK--YQNKYKCIVCDESHYLKNSFSKRT------KAIVPIIKSAKRCVLLSGTPALN 432
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+P +++ Q++ + P L +F YC K Y ++ ++ EEL++ L
Sbjct: 433 KPSELYEQVSSIIPNLFNYN--EFCDRYC-YKDKNIYTRKI--EYVGCKHTEELHLFLTN 487
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
T+MIRRLK+ +L +LP K R I + + +E+ + + ND +
Sbjct: 488 TIMIRRLKKDVLKELPDKLRSKIPIEIPPNELSEILIYSKKLESKKNININDLDNINLSR 547
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
+D + + + I++L + + + D D+ K ++F HH
Sbjct: 548 FNDFNSNHDNNNNDEENITISQLFKMTGYAKVKAIKEYITYLIDADI-----KFLLFCHH 602
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
V+D + EF+ EK +GF+R+DG T R+ + +FQ +++IA++ ITA GVGL+ +
Sbjct: 603 KLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYIKNFQSDEKIRIALLSITACGVGLNLT 662
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
+A VVF EL P M+QAEDRAHR G T +NI+ A++T DE W+ +N+ +
Sbjct: 663 AANTVVFGELYWVPGQMIQAEDRAHRIGTTHDTINIHYLVAQNTIDEVVWKIINRKWNTL 722
Query: 659 SSATNGKYDAL--QEIAVEGVSYLEMSDKTDRG 689
++A NG D+L +E++ L++++ T++
Sbjct: 723 TTALNGTEDSLNVKEVSKFDKFMLDLTNDTNKS 755
>gi|412992577|emb|CCO18557.1| SNF2 super family [Bathycoccus prasinos]
Length = 1344
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 186/552 (33%), Positives = 273/552 (49%), Gaps = 90/552 (16%)
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILV 248
+ ++PK L+ + FQ+EGV++GL RGGR +IAD+MG+GKTLQAIA+ C+ + G +L+
Sbjct: 181 LNRIPKETLEKMYKFQIEGVKYGLSRGGRVMIADQMGVGKTLQAIALMCCYEVKEGPVLI 240
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFG-------------HRNNPVHLTRFP---R 292
V PA +R WA ELERW+P P D+ +V G ++ N + +
Sbjct: 241 VAPASMRTVWANELERWIPDIGPEDVVVVEGSTAKWDLEALGEAYKKNEREGREYKGKRK 300
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK-AVLDVAAKVKRIVL 351
+ V SY ML LR S + +W +I DESH + S SE A + + +R +L
Sbjct: 301 IAVSSYHMLSNLRTSFLNINWGTIICDESHVLSTSVYGSEAAYTAIATQLLKTRSRRAIL 360
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ-GQLFQDFSKGVRL 410
+GTPSL +P+DIF+Q++ L P + G K +F YC + Q + G F G RL
Sbjct: 361 CTGTPSLVKPFDIFNQLDSLRPNMFG-TKQEFGVNYCRLVLAQASRSGNKFWKSLGGRRL 419
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL------------KRSEIVSAKAAV 458
EL+ LLK VMIRRLK ++ QLPPKRRQ+I L + K+ ++ + V
Sbjct: 420 NELHTLLKHAVMIRRLKCEVMDQLPPKRRQVIYLDISSEFTHWMKEHAKKFALLRKQLGV 479
Query: 459 GVINDSEKD-----------------ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501
G D E++ + T ++ DE D Q +G K
Sbjct: 480 GEGGDDEREHRYVVSDEDDEDEEPIVVSQRNTFEEIDEEKDDLNIVTDTDGEAQAIGKLK 539
Query: 502 LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD----GVQEFISEKGIGF 557
+ ++L +I +S ++++F HH VLD G+Q+ +S + I
Sbjct: 540 VKKAVKFLEESILI------------DKSQQVVVFGHHHSVLDEIYAGLQKVLSPEEI-- 585
Query: 558 VRIDGNTLPRDRQSAVHSFQLSN--------------EVKIAIIGITAGGVGLDFSSAQN 603
V +DG T +R+ V F +V++A+ GIT VG+D SSA
Sbjct: 586 VCVDGRTDAVERRERVDKFYGGKSQGFEEDGKTPSPAKVRVAVFGITL-AVGIDLSSAST 644
Query: 604 VVFLELPQSPSLMLQAEDRAHRR---GQTS--AVNIYIFCAKD---TTDESHWQNLNKSL 655
V F+ELPQ P+ +LQAEDRA RR G+ S VNIY AK D WQ L + +
Sbjct: 645 VCFVELPQKPADLLQAEDRAWRRERNGKNSKTCVNIYYCIAKAEGCAFDTDRWQRLGRKI 704
Query: 656 RCVSSATNGKYD 667
+ T+G D
Sbjct: 705 EQNTMMTDGSDD 716
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%)
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
DLFC+ DC+E + SG+ LR +F + GVC C+LDCH LV IK L QR
Sbjct: 1049 LHDLFCSKDCFEYHVQSRSGKTLRMAVFERDRGVCEKCKLDCHALVSRIKCLKPHQRLPI 1108
Query: 984 IVRVAPNVASRQ 995
I +AP Q
Sbjct: 1109 IESLAPQFTRAQ 1120
>gi|148226355|ref|NP_001089668.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Xenopus laevis]
gi|123903207|sp|Q498E7.1|SMAL1_XENLA RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; AltName:
Full=Sucrose nonfermenting protein 2-like 1
gi|71681279|gb|AAI00246.1| Smarcal1 protein [Xenopus laevis]
Length = 960
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 279/538 (51%), Gaps = 62/538 (11%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVV----EKLSHSIDTGRWNPCRPEHLSDEV 185
+ L DY ++ ++N +EVE +P L EK + S+ E+
Sbjct: 396 FMLEDYQKLMESVRNIQQVEVEPLPRPVLQAFAPQFEKTTISLA--------------EI 441
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
D + + L+ ++PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA +
Sbjct: 442 EDVDLSHVDSKLIGNLMPFQRDGVNFAISREGRLLLADDMGLGKTIQAICIAAYYRKEWP 501
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
+LVV P+ +R +WAE RWLP P ++ +V G + +L + +IS+ +L ++
Sbjct: 502 LLVVAPSSVRFTWAEAFHRWLPSLNPESVNVIVTGRDSQSANL-----INIISFDLLGKM 556
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
K I ++ ++I+DESH ++ K KA + + KR++LLSGTP++SRP ++
Sbjct: 557 DK-QIAANFKVIIIDESHFLKNVKTA----RCKAAMPLLKSAKRVMLLSGTPAMSRPAEL 611
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ QI + P + +DF YCD K Q D+S L EL +LL++++MIR
Sbjct: 612 YTQIAAVRPTFFPRF-HDFGIRYCDAK-----QMPWGWDYSGSSNLNELKLLLEESIMIR 665
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK +L QLP K+R+++ +V+ + + A + + +
Sbjct: 666 RLKSEVLSQLPAKQRKMV--------VVAPEGITAKTKAALAAAAKEMAKGFKSKVQEKE 717
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV-NPRSNKMIIFAHHLKVL 543
A + Y AK+ E++ ID+ K ++FAHH VL
Sbjct: 718 ALL----LFYNRTAEAKIRSVLEYI--------------IDLLESGREKFLVFAHHKLVL 759
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
D + E + +K + ++RIDGNT DRQS H FQ S + +A++ ITA +GL SSA
Sbjct: 760 DNICEELGKKEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTLSSADL 819
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
VVF EL +P +++QAEDR HR GQTS+VNI+ AK T D+ W + + ++ + A
Sbjct: 820 VVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQA 877
>gi|328778817|ref|XP_624010.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Apis mellifera]
Length = 673
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 179/579 (30%), Positives = 296/579 (51%), Gaps = 71/579 (12%)
Query: 130 YKLRDYNPVLTCLKN-SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L+DY ++ + N + +++ G+P + L + K SI+T E++ +D
Sbjct: 115 FHLKDYETLMEKIINFKSNVQITGLPKIVLQIFRKNDTSINT-------IENIDLSDID- 166
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
PK LL+ I+PFQ EG+ +G+ +GGRC+IAD+MGLGKT+QA+ IA +L+
Sbjct: 167 -----PK-LLENIMPFQREGICYGISKGGRCMIADDMGLGKTIQALGIAHYCRKNWPLLI 220
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ P+ +R WAE + +LP +P H ++ N + ++V+ +Y +L R +
Sbjct: 221 IVPSSMRYQWAEAIYTFLP-SVPT--HYIYQFTNTK-DVIDDSKIVITTYDLLVRAVDTF 276
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ + +I+DESH ++ SK KA + ++ + +VLLSGTP LSRP +++ QI
Sbjct: 277 QCKIFGFVILDESHVLKSSKTA----RFKAAQCIVSQARHVVLLSGTPVLSRPIELYSQI 332
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
N++ P +G +Y YC G + DF+ ++EL++LLK+T +IRRLK
Sbjct: 333 NLIMPNFMGYHEYGIR--YC-----AGEKTSFGWDFTGSSNMQELHLLLKRTCIIRRLKN 385
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R++I LL I K + + EK N+ ++
Sbjct: 386 DILNQLPIKKREVI--LLNPDLIKIGKEMLEISKKLEKKVLNNLEKHNTLLQ-------- 435
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
Y E IAK +++S + +N + K IIFAHH +L+ + E
Sbjct: 436 ----YYNESSIAKQKAICDYVS------------KLFINKQ--KCIIFAHHHNILNAICE 477
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ I F+RIDG T P R+ + FQ ++ A++ ITA G+ ++AQ V+F E
Sbjct: 478 VVESMNIKFIRIDGKTNPERRKYEIDKFQNNDSYIAAVLSITAANAGITLTAAQLVIFAE 537
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
L +P ++ QAEDR HR GQ V I AK T D+ W + K K +
Sbjct: 538 LFWNPGILCQAEDRVHRIGQYKNVIIQYLVAKHTADDYLWPLIQK-----------KMNV 586
Query: 669 LQEIAVEGVSYLEMSDKTDRG--SEDLTLDQVASSDQFQ 705
L E+ ++ L+ D T +G S+ TL+ +++Q++
Sbjct: 587 LNEVGLDQDFSLKNIDYTTQGLNSKQKTLNFFINNEQYK 625
>gi|167539902|ref|XP_001741408.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165894110|gb|EDR22194.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 956
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 176/543 (32%), Positives = 286/543 (52%), Gaps = 69/543 (12%)
Query: 132 LRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIG 191
LR Y+ +++ LKN G ++ IP L + + IDT S EVVD +
Sbjct: 71 LRHYHDIVSQLKN-MGFSMKEIPNEVLQYFQDVIEGIDTS----------SKEVVD--MS 117
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++ + LL + PFQ++GV FG++ GRCLIADEMGLGKTLQAI+IA + + +LV+CP
Sbjct: 118 QIGEQLLFKLKPFQIQGVEFGIQHNGRCLIADEMGLGKTLQAISIAQYYKTDWPLLVICP 177
Query: 252 AILRLSWAEELERWLPFC-LPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ LR +W E+ + C D+ ++F + N P + RV ++SY + + + +
Sbjct: 178 SSLRANWKNEI---ITNCKCYDDVVVMFSSKDLNKP-----WGRVTIVSYEIAAKHAQEI 229
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+++ + ++I DE H+++ S+ + + +L V + +LLSGT LSRP +++ Q+
Sbjct: 230 LDKQFKIVIADECHYLK----NSQSKRCRELLPVLINAEHTILLSGTALLSRPSELYPQM 285
Query: 369 NML-WPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
L +P + + + F YC+ K Q G+ D++ L EL++LL + VMIRRL
Sbjct: 286 QALRFP--IFPSFHKFGVRYCNAKVTQFGW------DYTGNSHLPELHILLSKFVMIRRL 337
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ +L +LP K R + + + + +++ K + + + +K DK K + +
Sbjct: 338 KEEVLSELPDKERMEVVIDIPQEDVIKMKD-LRLAAELQKKKLGDKVEKFTKQ------- 389
Query: 487 CRLGKISYQELG----IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
I + EL AKL G +L +I E K+++F HH ++
Sbjct: 390 -----IQFVELYNMTCTAKLKGVCSFLD--KMIIEG------------KKLLVFGHHQEM 430
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LDG++ +I E I ++RIDG+T R V FQ ++IAI+ +TA G G+ SA
Sbjct: 431 LDGIENYIKESNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAAGTGITLHSAD 490
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
VVF EL +P ++ QAEDR HR GQ + V I+ K T D+ W L K L+
Sbjct: 491 TVVFAELYWTPGVLRQAEDRVHRIGQKNDVRIFYLIGKQTVDDLIWPLLEKKLKISGETL 550
Query: 663 NGK 665
+GK
Sbjct: 551 DGK 553
>gi|118403613|ref|NP_001072923.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|123908803|sp|Q0P4U8.1|SMAL1_XENTR RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; AltName:
Full=Sucrose nonfermenting protein 2-like 1
gi|112418502|gb|AAI21898.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Xenopus (Silurana)
tropicalis]
Length = 942
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 281/532 (52%), Gaps = 50/532 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ ++N +EVE +P L + + G+ R +E+ +
Sbjct: 378 FMLEDYQKLMESVRNIQQVEVEPLPRPVLQ-----AFAPQFGKTTIIR-----EEIPEVD 427
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ ++ L ++PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 428 LSQVDSKLGSNLMPFQRDGVNFAVSREGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVV 487
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE +RWLP P ++++ R++ + ++S+ +L ++ K I
Sbjct: 488 APSSVRFTWAEAFQRWLPSIRPESVNVIVTGRDS----QSASLINIVSFDLLGKMDK-QI 542
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ ++I+DESH ++ K KA + + KR++LLSGTP++SRP +++ QI
Sbjct: 543 AATFQVIIIDESHFLKNVKTA----RCKAAMPLLKSAKRVMLLSGTPAMSRPAELYTQIA 598
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ P + +DF YCD K Q D+S L EL +LL++++MIRRLK
Sbjct: 599 AVRPSFFPRF-HDFGIRYCDAK-----QMPWGWDYSGSSNLNELKLLLEESIMIRRLKSE 652
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QLP K+R+++ +V+ + + A + + + A
Sbjct: 653 VLSQLPAKQRKMV--------VVAPEGITAKTKAALAAAAKEMAKGFKSKVQEKEALL-- 702
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+ Y AK+ E++ D+ + R K ++FAHH VLD + E
Sbjct: 703 --LFYNRTAEAKIRSVLEYI------------MDLLESGR-EKFLVFAHHKLVLDHICEE 747
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ +K + ++RIDGNT DRQS H FQ+S + +A++ ITA +GL SSA VVF EL
Sbjct: 748 LGKKDVPYIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTLSSADLVVFAEL 807
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+P +++QAEDR HR GQTS+VNI+ AK T D+ W + + ++ + A
Sbjct: 808 FWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQA 859
>gi|183233301|ref|XP_654593.2| helicase [Entamoeba histolytica HM-1:IMSS]
gi|169801642|gb|EAL49206.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449702489|gb|EMD43120.1| helicase, putative [Entamoeba histolytica KU27]
Length = 956
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 176/543 (32%), Positives = 285/543 (52%), Gaps = 69/543 (12%)
Query: 132 LRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIG 191
LR Y+ +++ LKN G ++ IP L + IDT EVVD +
Sbjct: 71 LRHYHNIVSQLKN-MGFSMKEIPNEVLQYFQDEIEGIDTS----------PQEVVD--MS 117
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++ + LL + PFQ++GV FG+R GRCLIADEMGLGKTLQAI+IA + + +LV+CP
Sbjct: 118 RIGEQLLFKLKPFQVQGVEFGIRHNGRCLIADEMGLGKTLQAISIAQYYKTDWPLLVICP 177
Query: 252 AILRLSWAEELERWLPFC-LPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ LR +W E+ + C D+ ++F + N P + +V ++SY + + + +
Sbjct: 178 SSLRTNWKNEI---VTNCKCYDDVVVMFSSKDLNKP-----WGKVTIVSYEIAAKHAQEI 229
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+++ + ++I DE H+++ S+ + + +L V + +LLSGT LSRP +++ Q+
Sbjct: 230 LDKQFKIVIADECHYLK----NSQSKRCRELLPVLVNAEHTILLSGTALLSRPSELYPQM 285
Query: 369 NML-WPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
L +P + + ++F YC+ K Q G+ D++ L EL++LL + VMIRRL
Sbjct: 286 QALRFP--IFSSFHNFGIRYCNAKVTQFGW------DYTGNSHLPELHILLSKFVMIRRL 337
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ +L +LP K R + + + + +I+ K + + + +K DK K + +
Sbjct: 338 KEEVLSELPDKERMEVVIDISQEDIIKMKD-LRLAAEIQKKKLGDKVEKFTKQ------- 389
Query: 487 CRLGKISYQELG----IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
I + EL AKL G +L +I E K+++F HH ++
Sbjct: 390 -----IQFVELYNMTCTAKLKGVCSFLD--KMIIEG------------KKLLVFGHHQEM 430
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LDG++ +I E I ++RIDG+T R V FQ ++IAI+ +TA G G+ SA
Sbjct: 431 LDGIETYIKENNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAAGTGITLHSAD 490
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
VVF EL +P ++ QAEDR HR GQ + V I+ K T D+ W L K L+
Sbjct: 491 TVVFAELYWTPGVLRQAEDRVHRIGQKNDVRIFYLIGKQTVDDLIWPLLEKKLKISGETL 550
Query: 663 NGK 665
+GK
Sbjct: 551 DGK 553
>gi|124513860|ref|XP_001350286.1| DNA helicase, putative [Plasmodium falciparum 3D7]
gi|23615703|emb|CAD52695.1| DNA helicase, putative [Plasmodium falciparum 3D7]
Length = 906
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 200/681 (29%), Positives = 331/681 (48%), Gaps = 73/681 (10%)
Query: 48 STEPTHFPKSALADPNSTTQLPE-----NFRVRLEICSPDSFSVTPLAIEGFVYPGEEEC 102
S+E ++ + ++D N+ PE + V EI S DSF + +
Sbjct: 187 SSEYRNYEEKVMSDINNAYNQPEEKKEFDIIVAFEIFSDDSFKIVQKDNNNKKFVSFRNF 246
Query: 103 LRR-LGQWLSDVMPSHYTQNNSGGKACV-YKLRDYNPVLTCLKNSAGI--EVEGIPWVTL 158
+ + L + +S++ P+ NN C+ ++ Y VL LK I V IP L
Sbjct: 247 ISKDLFKIISELNPTLKKINNY---TCITFEAEKYEYVLNNLKEKCTILGGVHTIPNFLL 303
Query: 159 NVVEKLSHSIDTGRWNPCRPEHLSDEV-------VDEMIGKLPKSLLDVILPFQLEGVRF 211
+ + + R + L++ + D++ L + L + FQ EGV F
Sbjct: 304 KCFKNYTKFSEPQRISEITANILTNTMCSYTKQHYDKLDHLLGEKLSVELRNFQREGVFF 363
Query: 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP 271
GL++ GR LI DEMGLGKTLQA+A+ A + +VVCP+ +R W ++ RWL +
Sbjct: 364 GLKKNGRVLIGDEMGLGKTLQALALMAFYKDDWPFIVVCPSSIRFQWKDQALRWLSHLIR 423
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKR 329
+ V +N + ++++ISY ++ + K + + +I DESH+++ SKR
Sbjct: 424 EEHICVV--KNGKTDIPSNTKMIIISYELITKNDK--YQDKYKSIICDESHYLKNSLSKR 479
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
T K + + KR VLLSGTP+L++P +++ QI+ + P ++F YC
Sbjct: 480 T------KVITPIIKNAKRCVLLSGTPALNKPSELYEQISSIMPNFFNY--HEFCDRYC- 530
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
K Y ++ ++ EEL++ L T+MIRRLK+ +L +LP K R I + + +
Sbjct: 531 FKDKNLYTKKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPVEIPQK 588
Query: 450 EI---------VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500
E+ + +K + + +N K D D++ + L KI+ G A
Sbjct: 589 ELSEILNYYKKLESKKNINFHDIDNIHLSNWSNSKSEDGDDENLSISHLFKIT----GYA 644
Query: 501 KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
K+ +E++S D D+ K ++F HH V+D V+ F+ E+ ++R+
Sbjct: 645 KVKAIKEYISY---------LIDADI-----KFLLFCHHKLVMDEVETFLKEQKCSYIRV 690
Query: 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
DG T R+ + +FQ + VKIA++ ITA G+GL+ ++A VVF EL P ++QAE
Sbjct: 691 DGLTPMEKREIYIKNFQNDDNVKIALLSITACGMGLNLTAANTVVFGELFWVPGQIIQAE 750
Query: 621 DRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSY 679
DRAHR G VNI+ A++T DE W+ +N+ +++A NG D+L V
Sbjct: 751 DRAHRIGTAHDVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGIEDSLNVKEV----- 805
Query: 680 LEMSDKTDRGSEDLTLDQVAS 700
+K D+ DLT D S
Sbjct: 806 ----NKFDKFMVDLTNDTNKS 822
>gi|224110292|ref|XP_002315473.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222864513|gb|EEF01644.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 670
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 169/504 (33%), Positives = 263/504 (52%), Gaps = 59/504 (11%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI---------AIAACFIS 242
++P + ++PFQ +GVRF L+ GGR L+ADEMGLGKTLQAI +I+ C +
Sbjct: 162 RIPDHIESKLMPFQRDGVRFVLQHGGRALLADEMGLGKTLQAIYLLISISILSISTCVRN 221
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV-------- 294
+ +L++ P+ LRL WA + +WL +P+ LV +++ + F V
Sbjct: 222 SWPVLILAPSSLRLHWASTIHQWLD--IPSSDILVVLSQSSGSNRAGFNIVSSSRSTIRL 279
Query: 295 -----VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
+ISY + +L+ ++ ++ ++I DESH ++ ++ + A L V K +
Sbjct: 280 DGLFNIISYDAVPKLQNKLMTSEFKVVIADESHFLK----NAQAKRTTASLPVIKKAQYA 335
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LLSGTP+LSRP ++F Q+ L+P + K +++ YC +G +F +
Sbjct: 336 ILLSGTPALSRPIELFKQLEALYPDVY-KNVHEYGNRYC--------KGGIFGVYQGASN 386
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
EEL+ L+K TVMIRRLK+ +L +LP KRRQ + L L ++ E +
Sbjct: 387 HEELHNLIKATVMIRRLKKDVLSELPVKRRQQVFLDLPEKDMKQINTLF-----RELEVV 441
Query: 470 NDKTPK-DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
K SDE +S I+ Y + AK+SG ++L V
Sbjct: 442 KGKIKACASDEEVESLKFTEKNLINKIYTDSAEAKISGVLDYLGT--------------V 487
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
K +IFAHH ++D + EF+ +K +G +RIDG T RQ+ V FQ + +K A+
Sbjct: 488 IEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGKTAAASRQALVTDFQEKDAIKAAV 547
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ I AGGVGL ++A V+F EL +P ++QAEDRAHR GQ S+VNIY A DT D+
Sbjct: 548 LSIRAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDI 607
Query: 647 HWQNLNKSLRCVSSATNGKYDALQ 670
W + L + +G+ L+
Sbjct: 608 IWDVVQSKLENLGQMLDGQEKTLE 631
>gi|428173499|gb|EKX42401.1| hypothetical protein GUITHDRAFT_141340 [Guillardia theta CCMP2712]
Length = 542
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 274/542 (50%), Gaps = 64/542 (11%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ + +++ +++ L + + V+ +P L + +L E S V EM
Sbjct: 38 FHVSEHDELVSSLSKCSNVSVKPLPATFLKALREL--------------ESQSSAVSSEM 83
Query: 190 IG------KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
+ LP LL +LPFQ EG+ F +R GGR LI DEMGLGKT+QAIAIA +
Sbjct: 84 VSLEHIWQALPPDLLAGLLPFQREGIAFAIRHGGRALIGDEMGLGKTVQAIAIAKYYEKE 143
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+L+V P+ LRL W +EL +WL D++++ ++ ++ +ISY + +
Sbjct: 144 WPLLIVTPSPLRLVWKQELMKWLKDVDHEDVNVIMSGKDQ-----MGGKITIISYDLFLK 198
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ + + +LI DESH + ++S + KA+L + KV+R +LL+GTP+LSRP +
Sbjct: 199 FTEELSKMSINVLIADESHFL----KSSSAKRTKAILPLIRKVRRAILLTGTPALSRPSE 254
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ QI+ L P L G +FA YCD K G+ D S L EL LL VMI
Sbjct: 255 LYTQISSLRPKLFGSWN-EFAYRYCDAKP-----GRWALDASGASNLSELRCLLND-VMI 307
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RRLK +L QLP KRRQ I + + + K + + N++ + ++
Sbjct: 308 RRLKSEVLTQLPSKRRQQIWVQTSKEANAAFKKKLEEMQSLNAIVMNNRAAPEERKNAKG 367
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
A + ++ Y+E G KL+ +E+L+ DG K ++F HH++
Sbjct: 368 LAQLLMNQL-YKETGAEKLAAVKEYLATM-----VDGGG---------KFLVFGHHIE-- 410
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+E + +T +R V +FQ ++ A++ +TA G GL F++A
Sbjct: 411 --DEEHPHRR---------STSMSERARLVDAFQKDPDISAAVLSVTAAGTGLTFTAANA 459
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VVF EL +P +M+QAEDR HR GQ +VNI+ AK + D+ W + K L V +A +
Sbjct: 460 VVFAELHWTPGVMMQAEDRVHRIGQQYSVNIHYMLAKGSVDDIMWPCIEKKLNVVGNALD 519
Query: 664 GK 665
G+
Sbjct: 520 GQ 521
>gi|405950921|gb|EKC18876.1| Zinc finger Ran-binding domain-containing protein 3 [Crassostrea
gigas]
Length = 1211
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 166/511 (32%), Positives = 272/511 (53%), Gaps = 57/511 (11%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKTLQA+++A + S +L++ P+ LR W EE+E+W P P DI +V N
Sbjct: 1 MGLGKTLQALSVAYLYQSEWPLLIIVPSSLRFCWVEEIEKWFPDTSPEDIFMV--QTGND 58
Query: 285 VHLTRFPRVVVISYTMLHR-----LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339
+ ++V+ +Y +L + + +++ Q + ++IVDESH++R K S KA+
Sbjct: 59 ASGIQDAKIVIATYGLLSKATSRVVLQALTNQKFQVVIVDESHYIRNIKTAS----CKAI 114
Query: 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQ 399
+ R +LLSGTPSLS+P ++F QI+ + P G + + + +CD K +Q +
Sbjct: 115 GPLIRAANRRILLSGTPSLSKPVELFSQIDAICPNKFG-SWWTYTAHFCDAK-IQHFGKI 172
Query: 400 LFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
++ LEEL L+ +MIRR+K +L QLP K+RQ I LK S++ +K
Sbjct: 173 RKRNVDGACNLEELQKKLRDVLMIRRMKDDVLTQLPAKQRQQILFQLKDSQV--SKDIQK 230
Query: 460 VINDSEKDATNDKTPKDS------DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
+ + D+ D+ +E S + K+ YQ G AK+ RE++++
Sbjct: 231 TFQELKSSMKRDRCQVDTVLQTVANEGSSSNTLSLIQKL-YQLSGEAKIGPAREYVAML- 288
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++ K ++FA+H +++G+Q+ + E + FVRIDG+T P DRQ V
Sbjct: 289 ------------CDNKNLKFLVFAYHRAMMNGLQQTLMEHDVKFVRIDGDTKPSDRQLYV 336
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
FQ + ++AI+ I A GVGL F+ A VVF E+ +P +++Q EDRAHR GQT V+
Sbjct: 337 QQFQSDPDTRVAILSILAAGVGLTFTKATLVVFAEMYWTPGVLIQCEDRAHRIGQTRCVS 396
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDL 693
I+ AKDT DE W + + ++A NG+ ++ +DK D+ +L
Sbjct: 397 IHYLVAKDTMDEWVWSAICRKTIVTTTALNGQKQLMK------------ADKGDKYQVEL 444
Query: 694 TLDQVASSDQFQELMKVPESSEA--SDFRAI 722
++++D + K P + EA +DF AI
Sbjct: 445 ----LSTADVY----KAPSAEEAVNTDFAAI 467
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 29/245 (11%)
Query: 753 HNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRP--EELDNTEHISGCLKENPGYRHAIQA 810
H S YT RI+LY D PL +F P EL+N ++ L +P +Q
Sbjct: 897 HFKCSAYTSRIYLY------DENGVPLRANFVPLDVELNNQGNLPDLLL-HPHNLRLVQK 949
Query: 811 FINEWNALRPIERTKLLGKPLQLPLSVELCY--LKETINHSSGGLLKGGSKRRTTPSLEI 868
F+ EWN+L +R +L+ K QL S + Y LK N ++ ++ +K
Sbjct: 950 FLREWNSLTETKR-RLIVKSSQLFDSPLVAYEALKSGKNITT---VRHKTKEDIAAESLA 1005
Query: 869 SHPLPSGAEWKKVRICSGSRKKEKEYTQGWTINDEPLCKLCQKTCKS--------KNAKN 920
L G VR+ S Q T + P+C C K C + KN+ +
Sbjct: 1006 KANLVQGG----VRVVKRSHHSGSSLMQATTSDGIPICLNCSKPCDNELLDKETLKNSDS 1061
Query: 921 AEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQR 980
A + FC+ C ++Y ++T+ + R++++ EHGVC C LD H L K I+ Q+
Sbjct: 1062 A--WATRFCSQRCMDKYWIQTNSSYCRDQVYEAEHGVCQLCHLDAHSLYKQIRDTEDVQK 1119
Query: 981 RKYIV 985
R I+
Sbjct: 1120 RVDIL 1124
>gi|307209215|gb|EFN86322.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Harpegnathos
saltator]
Length = 670
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 169/536 (31%), Positives = 272/536 (50%), Gaps = 64/536 (11%)
Query: 130 YKLRDY-NPVLTCLKNSAGIEVEGIPWVTLNVVEK-LSHSIDTGRWNPCRPEHLSDEVVD 187
+ + DY N + +++ I + IP L V ++ L I T P+
Sbjct: 116 FHINDYENLMQKLIRHELKISITRIPETVLQVFKRNLKFDIQTSE-----PD-------- 162
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+ K+ K+L+D ++PFQ +G+ +G+ + GRC+IAD+MGLGKT+QA+ IA F ++ +L
Sbjct: 163 --LSKIDKTLIDTLMPFQQDGLCYGISKNGRCIIADDMGLGKTIQALGIAYYFKASWPLL 220
Query: 248 VVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
+V P+ +R W+E + +LP +PA IH H N ++ +ISY +L R
Sbjct: 221 IVVPSSVRFQWSEAIYEFLP-SIPAQYIH----HFANTKDYIGDEKITIISYDLLSRAVD 275
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
++ + + +I+DESH ++ +K +A + A+ +VLL+GTP+LSRP +++
Sbjct: 276 TLQKHIYGFVILDESHLLKSNKTV----RFQAAQRICAQAHHVVLLTGTPALSRPIELYS 331
Query: 367 QINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
QIN++ P + +Y YC KT G+ DF+ ++EL +LLK T MIRR
Sbjct: 332 QINLIIPRFMKYEEYGIR--YCAGQKTAFGW------DFTGFSNMQELQLLLKMTCMIRR 383
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK +L QLP K RQ+I L A G +K KT D D+H+ A
Sbjct: 384 LKADVLNQLPSKIRQVIIL-------DPALIKAGTKEMKKKFEQMQKTTTDFDKHN---A 433
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
+ Y E IA+L E++ D+ + K +++AHH +LD
Sbjct: 434 MLQY----YYESSIARLKAVSEYVK--------------DLFEKKRKCLLYAHHQNILDA 475
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+ + I ++RIDG T R+ + FQ ++ A++ ITA G+ ++A VV
Sbjct: 476 ICDVAESMNIQYIRIDGKTTSEQRKYQIDKFQEHDDYLAAVLSITAANAGITLTAAHLVV 535
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
F EL +P ++ QAEDR HR GQ V I AKDT D+ W + K + +++
Sbjct: 536 FTELFWNPGILCQAEDRVHRIGQNDNVIIQYLVAKDTADDYMWPLIKKKMDILNAV 591
>gi|348519922|ref|XP_003447478.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Oreochromis niloticus]
Length = 810
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 178/565 (31%), Positives = 287/565 (50%), Gaps = 60/565 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ L A +EVE +P + + R++ L+ V +
Sbjct: 250 FSLEDYKRLMDLLSGIAAVEVEPLPRAIIQAF--------SARFDGTEARILN--VPEAD 299
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + SL ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 300 LSSIDPSLTRSLMPFQREGVNFAVSKQGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVV 359
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP P I++V +++ R + +ISY +L R+ K
Sbjct: 360 TPSSVRFTWAEAFRRWLPSLTPDSINVVVKAKDS----LRSGLINIISYDLLSRMDKQQP 415
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ +LI+DESH ++ K KA L + KR++LLSGTP++SRP +++ QI
Sbjct: 416 GNPFNVLIMDESHFLKNMKTA----RCKAALPLLKVAKRVILLSGTPAMSRPAELYTQIL 471
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ P L + ++F YCD + Q D++ L EL +LL++ +M+RRLK
Sbjct: 472 AVRPTLFPRF-HEFGIRYCDAR-----QMTWGWDYTGSSNLGELKLLLEECLMLRRLKSE 525
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QLP K+R+++ + + IN K A + + + H +
Sbjct: 526 VLSQLPAKQRKVVTV------------TIDGINTRTKAALSAAAKQLAKGHRNKMEEKEA 573
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+ Y AKL E+++ D+ R K ++FAHH VLD +
Sbjct: 574 LLVFYNHTAEAKLQAIMEYIT------------DMLECGR-EKFLVFAHHKLVLDHITTE 620
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ +K + F+RIDG+T +RQ FQ S + +A++ ITA +GL SA V+F EL
Sbjct: 621 LEKKNVDFIRIDGSTPSAERQQLCERFQYSAKTCVAVLSITAANMGLTLHSADLVIFAEL 680
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
+P +++QAEDR HR GQTS+VNI+ AK T D+ W + + K + L
Sbjct: 681 FWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDHLWPMIQE-----------KMNVL 729
Query: 670 QEIAVEGVSYLEMSDKTDRGSEDLT 694
+++ + ++ E ++ T S+D T
Sbjct: 730 EQVGLSESNFSETAENTSFHSKDPT 754
>gi|301608898|ref|XP_002934016.1| PREDICTED: zinc finger Ran-binding domain-containing protein
3-like, partial [Xenopus (Silurana) tropicalis]
Length = 489
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 259/501 (51%), Gaps = 62/501 (12%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
VD + LP L + +LPFQ EGV F L+R GRC+IADEMGLGKTLQAIA+A + +
Sbjct: 17 VDSQLSYLPDKLRERLLPFQREGVCFALKRHGRCMIADEMGLGKTLQAIAVAYYYRNEWP 76
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTML-- 301
+L+V P+ LR W EE+E+W+P P DI ++ N + R +V V+ Y +L
Sbjct: 77 LLIVVPSSLRYPWIEEMEKWIPELCPEDITVI----ENKTDVGRMSACKVTVLGYGLLTT 132
Query: 302 --HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
L ++ +Q + +++VDESH+++ S+ S K +L + K R +LL+GTP+L
Sbjct: 133 DAQTLIDALYKQHFRVVLVDESHYMK-SRNASRS---KLLLPIVQKAARALLLTGTPALG 188
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG------------------------ 395
RP +++ QI+ L+P G ++AK YC+
Sbjct: 189 RPEELYMQIDALFPKKFGTWT-EYAKKYCNAHVSYPPCTFVTECGKAPEDSCLSQQLPLM 247
Query: 396 YQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
Y G Q D+ L+EL+ L +MIRRLK +L QLPPK RQ I L + A
Sbjct: 248 YFGNRTQWDYRGASNLDELHQRLG-NIMIRRLKNEVLTQLPPKIRQRIPFDLPKD---VA 303
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIH 512
K G I + EK + P + +G I+ +++ +AK ++++ +
Sbjct: 304 KEMNGSIEEWEKLM---RCPDSMAAESSNPFTQIMGLITRMFKQTALAKAGAVKDYIKM- 359
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
+ E+D K ++FAHHL +L E E ++RIDG+ +R
Sbjct: 360 --MLENDKL----------KFLVFAHHLSMLQACTEAAIESKARYIRIDGSVPSSERIHL 407
Query: 573 VHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
VH FQ E ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+V
Sbjct: 408 VHQFQNDPETRVAILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSV 467
Query: 633 NIYIFCAKDTTDESHWQNLNK 653
+I+ A+ T D W LN+
Sbjct: 468 HIHYLIARGTMDTLMWGMLNR 488
>gi|330797634|ref|XP_003286864.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
gi|325083166|gb|EGC36626.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
Length = 534
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 174/548 (31%), Positives = 290/548 (52%), Gaps = 63/548 (11%)
Query: 114 MPSHYTQNNSGGKACVYKLRDYNPVLTCLK--NSAGIEVEGIPWVTLNVVEKLSHSIDTG 171
+P + + G K ++K+++++ + L N + ++V +P H I T
Sbjct: 25 VPGAHYKEYQGCKWWLFKIQEHDRLCAKLYSLNQSELKVHRLP----------PHIIKTF 74
Query: 172 RWNPCRPEHLSD-EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKT 230
+PE+ SD + +D ++P SLL PFQ +G+ FG+ +GGRCLIAD+MGLGKT
Sbjct: 75 ----LKPENASDPKPLDIDFSQMPSSLL----PFQKKGIEFGIEKGGRCLIADDMGLGKT 126
Query: 231 LQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
+Q I+IA + + +L+V P+ LRL WA+ +E++ P +DI+LV + L
Sbjct: 127 IQGISIAYHYRNEWPLLIVTPSSLRLVWADSIEKFFPQIPSSDINLVMNGKCGLNGL--- 183
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
+ +ISY ++ ++++ + ++++DE H+++ + + K+ D+ ++ KR +
Sbjct: 184 --INIISYDLVTTKLDVILKKGFKVVVLDECHYIK--QNVFRSQRSKSSCDILSRAKRTI 239
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
LLSGTP+LSRP ++++QIN + P + + D+A YC Y+ + + S
Sbjct: 240 LLSGTPALSRPIELYNQINCIKPNFM--SWMDYAYRYC-----AAYKDRYSINTSGFSNT 292
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
+ELN+ L T MIRRLK +L +LP KRR+ I + L + + K V EK +
Sbjct: 293 KELNLFL-NTFMIRRLKDEVLTELPAKRRERITVKLDKKRLKDIKQTV------EKIRQH 345
Query: 471 DKTPKDSDEHDDSGACCRLGKISY-----QELGIAKLSGFREWLSIHPVIAESDGAADID 525
K D + + R K S ++ G+ KLS ++L D D
Sbjct: 346 SKVMGDGGVDNRTAMSARGSKSSMFLKLLRDTGLYKLSAINQFL--------KDKLTD-- 395
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEF-----ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
P K +IFAHH V++G+ I ++ + F+ I G+T ++R V+ FQ +
Sbjct: 396 -APPDQKFLIFAHHKGVIEGICNMLRKIKIDKEKLDFITIVGSTQAQNRNELVNHFQSNP 454
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ +IA++ ITA G GL ++A V+F EL +P ++ QAEDRAHR GQTS+V +
Sbjct: 455 KCRIAVLSITAAGTGLTLTAATCVIFAELLWTPGVLFQAEDRAHRYGQTSSVLVQYLIGM 514
Query: 641 DTTDESHW 648
T DES W
Sbjct: 515 GTVDESIW 522
>gi|358336414|dbj|GAA54929.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Clonorchis
sinensis]
Length = 1159
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/527 (31%), Positives = 268/527 (50%), Gaps = 57/527 (10%)
Query: 143 KNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVIL 202
K GI ++G+P + + NP + V + LP L+ V+
Sbjct: 503 KAMPGIAIDGLPSAVFKTFKSAFSA------NPSEAVE-GNPTVKNLTDYLPGDLVRVLF 555
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
PFQ EGV L R GR L+AD+MGLGKT+QA+A+AA + S +L+V P+ +R SW ++
Sbjct: 556 PFQREGVSLALARSGRVLLADDMGLGKTIQALAVAAAYRSDWPLLIVAPSSVRFSWRDQC 615
Query: 263 ERWLPFCL---PADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
RWL L ADI +V R+ + TR + +ISY ++ + + + + ++
Sbjct: 616 LRWLSGPLRITSADILVVANGRDMEGINQYTTRL--ITIISYDLMAKHAEQLRLCHFGVI 673
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ SK + KA + + KR++LLSGTP++SRP +++ QI+ + P L
Sbjct: 674 IMDESHFLKNSKAS----RTKAAIPLLKATKRVLLLSGTPAVSRPAELYSQISGVAPNLF 729
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
++F YC K G+ D++ + EL ++L++++MIRRLK +L QLP
Sbjct: 730 RGGFHEFGLRYCAAKECPWGW------DYTGCSHMTELQLILEESIMIRRLKSDVLSQLP 783
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY- 494
PKRR+++ L ++ A G + K P SDE R + Y
Sbjct: 784 PKRRELVVL---DPNVIKA----GRLKFHAKRMVTSSLP--SDER-------RAAMLQYF 827
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
E K+ ++++ +D+ K +++AHH +VLD + + EK
Sbjct: 828 HETASVKVPALQQYV--------------LDLVEVGRKFLVYAHHTEVLDALSNLLMEKS 873
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
I F+RIDG T R FQ +A++ ITA G GL+ ++A VVF EL +P
Sbjct: 874 IDFIRIDGRTNSEQRSVVCRKFQQEENCLVALLSITAAGTGLNMTAASLVVFAELYWNPG 933
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
++QAEDRA+R GQ +V++ A+ T D+ W + K L +S A
Sbjct: 934 ALVQAEDRAYRIGQQDSVSVRYLLAEGTADDYIWSLIEKKLNVLSKA 980
>gi|221057618|ref|XP_002261317.1| DNA helicase [Plasmodium knowlesi strain H]
gi|194247322|emb|CAQ40722.1| DNA helicase, putative [Plasmodium knowlesi strain H]
Length = 875
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 205/667 (30%), Positives = 327/667 (49%), Gaps = 96/667 (14%)
Query: 74 VRLEICSPDSFSVTPL----AIEGFVYPGEEECL-RRLGQWLSDVMPSHYTQNNSGGKAC 128
V EI S D+F + + G Y + L + L + LS+ P+ NN
Sbjct: 174 VAFEIFSVDTFKIVQMDNNSTGSGRKYASFKNYLPKELFKILSEFNPTLKKLNNYS--CT 231
Query: 129 VYKLRDYNPVLTCLKNSAGI--EVEGIPWVTLNV------------VEKLSHSIDTGRWN 174
++ Y VL+ LK I V+ IP L V +++ +I T
Sbjct: 232 TFEADKYEYVLSNLKEKCTILGGVQSIPNFLLKCFKLYSRFSEPQKVSEMTANILTNTLC 291
Query: 175 PCRPEHLSDEVVDEMIG-KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
P ++ + +D ++G KL L + FQ EGV FGL++ GR LI DEMGLGKTLQA
Sbjct: 292 PYTEKNY--DKMDILVGEKLSAELKN----FQREGVYFGLKKNGRVLIGDEMGLGKTLQA 345
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A+ A + +VVCP+ +R W ++ RWL L + V ++ + R ++
Sbjct: 346 LALMAFYQEDWPFIVVCPSSIRFQWKDQALRWLSHLLSENEICVV--KSGKTDIPRNCKM 403
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVL 351
++ISY ++ + K + + ++ DESH+++ SKRT KA+ + KR VL
Sbjct: 404 IIISYELMTKNDK--YQNKYKSIVCDESHYLKNSFSKRT------KAITPIIRSAKRCVL 455
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
LSGTP+L++P +++ Q++ + P L +F + YC + Y + ++ E
Sbjct: 456 LSGTPALNKPSELYEQVSSIIPDLFNYN--EFCERYC-FRDKNMYTRKF--EYVGCKHTE 510
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL---------LLKRSEIVSAKAAV---- 458
EL++ L T+MIRRLK+ +L +LP K R I + +L ++ K +
Sbjct: 511 ELHLFLTNTIMIRRLKKDVLKELPEKLRSKIPVEIPPKELSEILTYQRMLEGKKNINLED 570
Query: 459 --------GVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
G N+ TN TP DE + S L KI+ G AK+ +E+++
Sbjct: 571 DLDGFPLTGGANEYGYGRTNIDTPNRIDEENVS--ISHLFKIT----GYAKVKAIKEYIT 624
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
D D+ K ++F HH V+D + +F++EK F+RIDG T R+
Sbjct: 625 Y---------LIDADI-----KFLLFCHHKLVMDEIDKFLTEKKCMFIRIDGLTPIDKRE 670
Query: 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT- 629
+ SFQ +++KIA++ +TA G+GL+ ++A VVF EL P ++QAEDRAHR G T
Sbjct: 671 LYIKSFQNDDKIKIALLSLTACGLGLNLTAANTVVFGELYWVPGQIIQAEDRAHRIGTTH 730
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
+NI+ A+ T DE+ W+ +N+ +++A NG D+L V +K DR
Sbjct: 731 EVINIHYLIAQKTIDETVWRIINRKWNTLTTALNGMEDSLNVKEV---------NKFDRF 781
Query: 690 SEDLTLD 696
DLT D
Sbjct: 782 MLDLTND 788
>gi|126337900|ref|XP_001367889.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 [Monodelphis
domestica]
Length = 965
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 291/533 (54%), Gaps = 52/533 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L+D+ ++ + GI +E +P VV+ + + + S+E+ +
Sbjct: 392 FHLKDHKRLMEEIHRLPGIHLEPLPKA---VVQAFAGYL-------AKTSSHSEEIPEAD 441
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA + + +LVV
Sbjct: 442 LSAVDPKLVSSLMPFQRIGVNFAISKGGRLLLADDMGLGKTIQAICIAAYYRTEWPLLVV 501
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +W + RWLP P ++V +++ LT + ++S+ +L ++ K +
Sbjct: 502 TPSTVRYTWEQAFHRWLPSLSPDSTNVVVTGKDS---LTAG-LINIVSFDLLSKMNKKL- 556
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 557 QTSFQVIIIDESHFLKNIKTA----RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQIV 612
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ P + +DFA YCD K + G+ D+S L EL +LL+++VM+RRLK
Sbjct: 613 AVKPFFF-RQFHDFALRYCDAKKLPWGW------DYSGSSNLGELKLLLEESVMLRRLKS 665
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R+++ + L + +SAK + +++ AT + + E A
Sbjct: 666 DVLSQLPAKQRKMVVVALGQ---MSAKTRASLAAAAKEMATEKTSRRQQKE-----ALL- 716
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ + AK I P +D D+ + R K+++FAHH VLD + +
Sbjct: 717 ---LFFHRTAEAK---------IQPA---TDYILDLLESGR-EKLLVFAHHKLVLDALSD 760
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +K IG++RIDG T DRQ+ FQLS + +A++ ITA +GL FS+ VVF E
Sbjct: 761 ELEKKHIGYIRIDGATSSSDRQTLCQQFQLSEKCAVAVLSITAANMGLTFSATDLVVFAE 820
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
L +P +++QAEDR HR GQTS+V I+ A+ T D+ W + + ++ + A
Sbjct: 821 LFWNPGVLIQAEDRVHRIGQTSSVTIHYLVARGTADDYLWPLIQEKIKVLGQA 873
>gi|71029760|ref|XP_764523.1| DNA helicase [Theileria parva strain Muguga]
gi|68351477|gb|EAN32240.1| DNA helicase, putative [Theileria parva]
Length = 941
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 188/660 (28%), Positives = 319/660 (48%), Gaps = 131/660 (19%)
Query: 122 NSGGKACV-YKLRDYNPVLTCLKNSAGIE--VEGIPWVTLNV------------VEKLSH 166
N G + C+ YK DYN VL L+++ + VE IP L V +E+ +
Sbjct: 279 NLGKERCITYKASDYNTVLKGLRSALKDKNAVEPIPNFVLRVFPSFIPFSRDFNLEEKTR 338
Query: 167 SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMG 226
I +GR + E++ + + ++IG L ++PFQ +GV FGL + GR LI DEMG
Sbjct: 339 QILSGRQDDYTRENMVN--LSKLIGD---ELWSQLMPFQRQGVYFGLAKNGRVLIGDEMG 393
Query: 227 LGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPA-------------- 272
LGKTLQA+AIAA + + +L++CP+ LR W ++ WLP +
Sbjct: 394 LGKTLQALAIAAFYNNDWPLLIICPSSLRFQWMDQCLTWLPHLVDEYQILMVMSSKPFTT 453
Query: 273 ---------------DIHLVFGHRNN-------------PVHLTRFPRVVVISYTMLHRL 304
D + + N+ + L +VV+ISY ++ R+
Sbjct: 454 TESKRKKSKNLFDFDDFDTYYAYNNSNTTVKTKTKSKGMDLELLDMYKVVIISYDLMVRI 513
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++ +++ ++I DESH+++ S+R+ K V+ V KR++LLSGTP+L+ P
Sbjct: 514 KEL---KEFKVVICDESHYLKNKASQRS------KRVVPVLKSAKRVILLSGTPALNFPS 564
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++F QI+ + PG + + F YC +T + ++ ++ EL++ L TVM
Sbjct: 565 ELFEQISSIIPGF--SSSHLFIDRYCKKRT-NWFTKRI--EYVDSKHTNELHLFLISTVM 619
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
IRRLK +L QLPPK R I + + + + K + + + +A + DS D
Sbjct: 620 IRRLKNDVLTQLPPKIRSKIPIEIPEKLVKTTKVMLEKFSSLKSNALFNNLDSDSGSTPD 679
Query: 483 SGACCRLGKI----------SYQELGIAKLSGF--------------REWLSIHPVIAES 518
S + KI +Y + + L+ F R +S+ + +
Sbjct: 680 SELGSKRPKIKIGPGKDRIENYYNVVMEHLNSFGDGDEMGYKEGDVKRAHMSLMAKLFQL 739
Query: 519 DGAADI--------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
G + ++ NK IIFAHH+ ++D +++ + K +G++RIDG+T DR
Sbjct: 740 TGESKTKGVCKYIEEILENQNKFIIFAHHMFMMDAIEDTLRSKKVGYIRIDGSTKMNDRA 799
Query: 571 SAVHSFQLSNE--------------------VKIAIIGITAGGVGLDFSSAQNVVFLELP 610
V+ FQ +NE V++A++ +T+ GVGL+ +S+ V+F EL
Sbjct: 800 KLVNLFQNTNESTKHEGKVDKVEDEDSPDYTVRVALLSLTSCGVGLNLTSSSTVIFAELY 859
Query: 611 QSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
P ++LQAEDR HR G + + +NI A+++ +E W+ +NK + V+S +G+ L
Sbjct: 860 WVPGVLLQAEDRVHRIGTKFNKININYLIAQNSVEEVMWKVINKKYKTVTSTLDGETGTL 919
>gi|66812928|ref|XP_640643.1| SNF2-related domain-containing protein [Dictyostelium discoideum
AX4]
gi|60468538|gb|EAL66541.1| SNF2-related domain-containing protein [Dictyostelium discoideum
AX4]
Length = 1021
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 259/463 (55%), Gaps = 45/463 (9%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L +LPFQ++G+ FG+ +GGRCLIAD+MGLGKT+Q I+IA + +L++ P+ LRL
Sbjct: 341 LPSTLLPFQIKGIEFGIEKGGRCLIADDMGLGKTIQGISIAYHYKEEWPLLIIAPSSLRL 400
Query: 257 SWAEELERWLPFCL-PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
WA+++E++ P + ++I+LV N L + +ISY ++ + + ++++++ +
Sbjct: 401 VWADQIEKFFPNKIQSSEINLVM---NGKCGLNGM--INIISYDLVTKKKDQILQKNFKV 455
Query: 316 LIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I DE H+++ S+R+ K+ +V + KR +LLSGTP+LSRP ++F QI+ + P
Sbjct: 456 VIADECHYIKQFNSQRS------KSTAEVLKRSKRCILLSGTPALSRPMELFIQISCINP 509
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ Y F YC +Q + + S ++ELN+ L T MIRRLK ++ +
Sbjct: 510 YFMQWRDYAFR--YC-----AAFQEKFCFNTSGCSNMKELNLYL-NTFMIRRLKDDVMTE 561
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK---DATNDKTPKDSDEHDDSGACCRLG 490
LP KRR+ I + L ++++ + + IN K D D +++ G +L
Sbjct: 562 LPEKRRERILVKLDKTKLKEVQKTLVEINQHRKVYLDPNTDMKTSFKNKNSRQGLFFKL- 620
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF- 549
++ G+ KL+ ++L V A P K +IFAHH +V++G+
Sbjct: 621 ---LRDTGLYKLTAVTQFLKEKLVDA-----------PIDQKFLIFAHHKEVINGIVHML 666
Query: 550 ----ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+ +K + F++IDG+T ++R V+ FQ ++A++ ITA G GL ++A V+
Sbjct: 667 GKIKVDKKKLEFIKIDGSTPAQNRNDYVNDFQNDPNCRVAVLSITAAGTGLTLTAATCVI 726
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
F EL +P ++ QAEDRAHR GQTS+V + A T DE W
Sbjct: 727 FAELSWTPGVLFQAEDRAHRYGQTSSVLVQYLIALGTVDEMIW 769
>gi|255087256|ref|XP_002505551.1| SNF2 super family [Micromonas sp. RCC299]
gi|226520821|gb|ACO66809.1| SNF2 super family [Micromonas sp. RCC299]
Length = 700
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 257/487 (52%), Gaps = 35/487 (7%)
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
+ V+ ++P+SL + PFQ+EGV++GL RGGR LI D+MGLGKT+QA+A+ +C+
Sbjct: 151 ERAVERAYARVPESLRTRMFPFQIEGVKYGLSRGGRVLIGDQMGLGKTVQALALISCYRE 210
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
L++ P LR +W E L RWL + G + ++ F ++ Y+++
Sbjct: 211 EWPCLILVPTSLRDAWHEALRRWLDVRPGLIASVGSGAEAHKINAATF---AIVPYSLVG 267
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+++ + +++ +++ DESH ++ +K + KAV+ + +R + L+GTP+LSRP
Sbjct: 268 KMQGKLAARNFQVVVCDESHFIKDAK----AQRTKAVVPLLKAARRAICLTGTPALSRPV 323
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ Q+ L P + K +FA+ YC G+QG D EL ++ + VM
Sbjct: 324 ELYSQVEALRPNVFTKFT-EFAQRYCSGSRF-GWQGCENPD--------ELYAIISRLVM 373
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRS-----EIVSAKAAVGVINDSEKDATNDKTPKDS 477
+RRLK+ +L QLPPKRR+ + + L + E+ + + + + D KD N
Sbjct: 374 VRRLKRDVLTQLPPKRREQVYIALDKKTEAYREMKAVQEQLQRLRDHAKD--NGLLLGAG 431
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
+ + RL Y AK + +++L + + GA D K + FA
Sbjct: 432 GDGKMNVEEKRLMNAYYVASAKAKATSVQDYLE---TLLDGSGAGD--------KFLFFA 480
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
HH ++LD + ++ F+RIDG T +R V FQ + +K+A++ I A G+GL
Sbjct: 481 HHKELLDAASTVLRKRKTQFIRIDGTTPTTERGGLVQQFQTVDAIKVAVLSIKAAGMGLT 540
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657
++A VVF EL +P ++QAEDRAHR GQ S+V + AK++ D+ W ++ L
Sbjct: 541 LTAASTVVFGELSWTPGDIVQAEDRAHRIGQASSVLVQFLHAKNSVDDVMWGSVQNKLEN 600
Query: 658 VSSATNG 664
+ +G
Sbjct: 601 LGQVLDG 607
>gi|260793856|ref|XP_002591926.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
gi|229277139|gb|EEN47937.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
Length = 563
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 169/571 (29%), Positives = 277/571 (48%), Gaps = 84/571 (14%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
++L+DY + K +++ +P L + PE L V +
Sbjct: 42 FELKDYEKLSKIQKAQLPVQLTPLPKTVLTTFR--------NQLKGNMPEELERRVPEAD 93
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L++ ++PFQ GV F + R GR LIAD+MGLGKT+QA+ +AA + +L+V
Sbjct: 94 LSGVEPRLVNTLMPFQRRGVNFAIWRNGRVLIADDMGLGKTVQALCVAAYYRKEWPLLIV 153
Query: 250 CPAILRLSWAEEL---------------------------------ERWLPFCLPADIHL 276
P+ LRL+WAE L RWLP I +
Sbjct: 154 TPSSLRLTWAEILVDIILVSSHIIAPESLLSSPQICLLFVSCFQAFHRWLPSVDAQSITV 213
Query: 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
+ ++NP +V + SY ++ R + + + + ++I+DESH ++ K
Sbjct: 214 MLTGKDNPAS----GQVTITSYDLMVRCSQQIRARGYRVIIMDESHVLKNFKTA----RT 265
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
KA L + R++LLSGTP+LSRP ++F Q++ + P L + ++F YC+ G
Sbjct: 266 KAALPLLKAASRVLLLSGTPALSRPSELFTQLSAVEPRLFS-SFHEFGIRYCE-----GK 319
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA 456
Q D+S ++EL ++L++ VMIRRLK+ +L QLP K+RQ+ +V
Sbjct: 320 QTAFCWDYSGSCNMKELQLVLEERVMIRRLKKDVLSQLPAKQRQV---------VVMEPG 370
Query: 457 AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA 516
AV S A N+ T K + + GA + + E + K+ ++++
Sbjct: 371 AVN--TKSFNAAANEMTKKHKNNAEQRGALLQY----FNETALVKIPHIKDYV------- 417
Query: 517 ESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
+D+ K ++FAHH VLD +++ + +KG G++RIDG T RQ +
Sbjct: 418 -------LDLLEADRKFLVFAHHQIVLDSLRDALDKKGYGYIRIDGKTPSDIRQQLCDRY 470
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
Q + ++A++ ITA GL ++A VVF EL +P +++QAEDRAHR GQ VN++
Sbjct: 471 QTQDSCQVALLSITAASTGLTLTAASLVVFTELFWNPGVLVQAEDRAHRIGQQDCVNVHY 530
Query: 637 FCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
A+ T D+ W + L +S A K D
Sbjct: 531 LVARGTADDYIWPLVQGKLDVLSKAGLTKDD 561
>gi|145481069|ref|XP_001426557.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393632|emb|CAK59159.1| unnamed protein product [Paramecium tetraurelia]
Length = 746
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 166/544 (30%), Positives = 291/544 (53%), Gaps = 52/544 (9%)
Query: 187 DEMIG--KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG 244
D MI ++ K+L + + +Q + ++ GL+ GR LIAD+MG+GKT+Q++A+A+ +
Sbjct: 111 DNMINYEQIDKALHENLYQYQRDCIKQGLKFNGRILIADDMGVGKTVQSLALASMYKQNW 170
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
+L++CP+ LRL+W +E+ WL DI L+ R + ++V++SY ++ ++
Sbjct: 171 PLLIMCPSPLRLNWQDEIIHWLKI-YKTDIQLINSGREG---IRMNAKIVIVSYDIVSKI 226
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK--AVLDVAAKVKRIVLLSGTPSLSRPY 362
+ S++ + + + I DE H+++ P ++ A + + + R +LL+GTP+LS+P
Sbjct: 227 KDSLMSRKFQICIADECHYLKS------PSAIRSQACVPILRQCMRTILLTGTPALSKPR 280
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
D+F+ +N++ P + G K +F YCD K + +G DF L+EL+ LL +M
Sbjct: 281 DLFNLLNIIRPDIFGSFK-EFGYRYCDPKLSRYTKGI---DFDGASNLKELHFLLTNYIM 336
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
IRRLK+ +L QLP KRRQI LL + I + +IN KDA ++ KD E
Sbjct: 337 IRRLKKDVLNQLPEKRRQIDALLKQLGNIDIQQ----LIN---KDAIFQESSKDHSEQ-- 387
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
+ + + Y G AK+ +++++ + E++ K + FAHH V
Sbjct: 388 LLSINSILQKCYMLTGQAKIKAIKDYIN---TLFENEI-----------KFLFFAHHQDV 433
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LD VQE+ E I ++RIDG+ R V FQ + ++IAI+ +T+ G+ ++A
Sbjct: 434 LDAVQEYCVENNIQYMRIDGSVSIEQRHLNVQMFQNNEAIRIAILSVTSANYGITLTAAS 493
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
+VF E+ +P++M+QAEDRAHR GQ V+ + T D+ + + + VS+
Sbjct: 494 TIVFGEMHWTPAIMMQAEDRAHRIGQVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFI 553
Query: 663 NGKYDAL-------QEIAVEGVSYLEM-SDKTDRGSEDLTLD---QVASSDQFQELMKVP 711
+G+ L EI ++G + SDK + ++ + Q + D +E+ ++
Sbjct: 554 DGQKQNLGAQEFSANEILMKGTQKASLISDKCEPVFQEANVQSSIQTLTEDDIEEIYQLL 613
Query: 712 ESSE 715
ES E
Sbjct: 614 ESKE 617
>gi|440296361|gb|ELP89188.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
invadens IP1]
Length = 1128
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 178/552 (32%), Positives = 278/552 (50%), Gaps = 63/552 (11%)
Query: 132 LRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIG 191
L+ Y+ V + L+ S G++V IP + ++ T + D++
Sbjct: 69 LKKYDSVFSQLR-STGLKVREIPNEVMRHFNSSQNTPQTTNF-------------DDIQK 114
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
+LP +L + FQ +G FG++ GRCLIADEMGLGKTLQAI+IA+ + +LV+CP
Sbjct: 115 RLPSALRTKLKDFQKDGFLFGIQHEGRCLIADEMGLGKTLQAISIASYYQREWPLLVICP 174
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+ +R +W +E+ + P C ++ L + P F V +++Y + + + I++
Sbjct: 175 SSVRHNWKDEILKNNPLCGSVNVILSSNDLSMP-----FGDVTIVTYEIASKHAELFIKK 229
Query: 312 DWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
++ +++VDE H+++ SKR E +L V KR VLLSGT LSRP +++ Q+
Sbjct: 230 NFQVIVVDECHYLKNPQSKRCRE------LLPVLLNSKRTVLLSGTALLSRPCELYPQLQ 283
Query: 370 ML-WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L +P + + + FA YC + G D++ L EL+VLL VMIRRLK
Sbjct: 284 ALRFP--IFDSFHKFAVRYCKARV-----GPFGWDYTGNSHLAELHVLLSNNVMIRRLKD 336
Query: 429 HLLVQ-LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L +P K R + + + E ++ +DA K E D
Sbjct: 337 DVLKDAIPEKERMTVEIAIPEEEAQRMQSI--------RDAAELARRKVGGEFDKLQKQA 388
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ + Y AK+ G ++ I +I E K ++FAHH ++LD ++
Sbjct: 389 QFLEF-YVMSSKAKVVGVCKF--IEKMILE------------GTKFLVFAHHQEMLDAIE 433
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
EF+ K IG++RIDG T P R V FQ + +KIAI+ +TA G G+ +A VVF
Sbjct: 434 EFVKSKDIGYIRIDGATQPTVRSKYVDKFQKNRNMKIAILSVTAAGTGITLHAADTVVFA 493
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK-- 665
EL +P ++ QAEDR HR GQ + V I+ K T D+ W L K L A +GK
Sbjct: 494 ELYWTPGILRQAEDRVHRIGQKNKVRIFYLIGKKTVDDYIWPLLEKKLYITGEALDGKES 553
Query: 666 -YDALQ-EIAVE 675
+DA+ E+ VE
Sbjct: 554 GHDAMDVEVNVE 565
>gi|389584478|dbj|GAB67210.1| helicase [Plasmodium cynomolgi strain B]
Length = 917
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 316/627 (50%), Gaps = 81/627 (12%)
Query: 104 RRLGQWLSDVMPSHYTQNNSGGKACV-YKLRDYNPVLTCLKNSAGI--EVEGIPWVTLNV 160
+ L + LS+ P+ NN +C+ ++ Y VL+ LK I ++ IP L
Sbjct: 251 KELFKILSEFNPTLKKTNNY---SCITFEADKYEYVLSNLKEKCTILGGIQSIPNFLLKC 307
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEV-------VDEMIGKLPKSLLDVILPFQLEGVRFGL 213
++ S + + + L++ + D+M + + L + FQ EGV FGL
Sbjct: 308 FKQYSRFSEPQKVSEITASILTNTLCPYTKKNYDKMDILVGEKLSAELKNFQREGVYFGL 367
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273
++ GR LI DEMGLGKTLQA+A+ A + +VVCP+ +R W ++ RWL L D
Sbjct: 368 KKNGRVLIGDEMGLGKTLQALALMAFYQEDWPFIVVCPSSIRFQWKDQALRWLSHLLSED 427
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTS 331
V ++ + R ++++ISY ++ + K + + ++ DESH+++ SKRT
Sbjct: 428 QICVV--KSGKTDIPRNCKMIIISYELITKNDK--YQNKYKSIVCDESHYLKNSFSKRT- 482
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
KA+ + KR VLLSGTP+L++P +++ Q++ + P L ++F YC K
Sbjct: 483 -----KAITPIIRSAKRCVLLSGTPALNKPSELYEQVSSIIPNLFNY--HEFCDRYC-FK 534
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL---KR 448
Y ++ ++ EEL++ L T+MIRRLK+ +L +LP K R I + + +
Sbjct: 535 DKNIYTRKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPEKLRSKIPVEIPPKEL 592
Query: 449 SEIVSAKAAV------------------GVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
SEI++ + G N+ + P DE D+ + L
Sbjct: 593 SEILTYHRKLESQKNINLSEDMNELPLSGGGNEYGYGQSTSGIPNKGDE--DNVSISHLF 650
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
K++ G AK+ +E+++ D D+ K ++F HH V+D + +F+
Sbjct: 651 KMT----GYAKVKAIKEYITY---------LIDADI-----KFLLFCHHRLVMDEIDDFL 692
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+EK F+R+DG T R+ + SFQ ++VKIA++ +TA G+GL+ ++A VVF EL
Sbjct: 693 TEKKTMFIRVDGLTPIEKREVYIKSFQNDDQVKIALLSLTACGIGLNLTAANTVVFGELY 752
Query: 611 QSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
P ++QAEDRAHR G T VNI+ A++T DE W+ +N+ +++A NG D+L
Sbjct: 753 WVPGQIIQAEDRAHRIGTTHEVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALNGMEDSL 812
Query: 670 QEIAVEGVSYLEMSDKTDRGSEDLTLD 696
V +K D+ DLT D
Sbjct: 813 NVKEV---------NKFDKFMIDLTND 830
>gi|403335006|gb|EJY66674.1| SNF2 family N-terminal domain containing protein [Oxytricha
trifallax]
Length = 1221
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 303/608 (49%), Gaps = 56/608 (9%)
Query: 138 VLTCLK--NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPK 195
+ CLK + I V+ IP + ++ E DT + + ++ D I LPK
Sbjct: 204 AVECLKYCQARKICVDLIPQMVFDLFEFKVPFSDTSKISIVNYDYHEDFDHKANIQNLPK 263
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL + FQ GV+FG+ GRCLI DEMG+GKT+QAI+I+ + +L++ P+ LR
Sbjct: 264 SLYAQLYHFQRVGVQFGIDHHGRCLIGDEMGVGKTIQAISISYLYKKDWPLLIITPSSLR 323
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
+W +EL WL F DI ++ ++ + ++ +ISY + RL + + + +
Sbjct: 324 FTWRDELMNWLGFIKEEDIQVLTSSQD---CFSSTCQIYIISYNIATRLAGLIDRKKFGM 380
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
IVDE+H++ ++ + + + ++ V K+KRI+LLSGTP L+RP +I++ +L P +
Sbjct: 381 TIVDEAHYL----KSRDSKRARNLVPVLMKMKRILLLSGTPILARPNEIYNLTRILRPDI 436
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
K +F YC+ K + Y G D++ EL LK + MIRR+KQ +L +LP
Sbjct: 437 FYSFK-EFGLRYCNPK--ESYFG---IDWTGAANNRELYQTLKNSFMIRRMKQEVLTELP 490
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEK-----------DATNDKTPKDSDEHDDSG 484
KRRQ I + +++ + + + + D T+D D+
Sbjct: 491 AKRRQRISISTDSNQVKKIHYMLKKVKNWQDKIGRKGENAFGDLTDDFDGFVQQHGDNMM 550
Query: 485 ACCRLGKI---------SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
A + +Y G AK+ G +E++ + E+ K +I
Sbjct: 551 ADPTFSSLDDKYSYLVNAYGLTGTAKIKGIQEFIE---TLLENRC-----------KFLI 596
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHH VLD +++ + +K + +RIDG R AV FQ +E +A++ +TA G
Sbjct: 597 FAHHYDVLDAIEDTVIKKKVSHIRIDGKIDVTKRYEAVRKFQTDSECLVAVLSLTASCTG 656
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ ++A VVF E+ +P +M+QAEDRAHR GQ ++VN+Y ++T D + L
Sbjct: 657 ITLTAASTVVFAEMNWTPGIMVQAEDRAHRIGQINSVNVYYLFGENTLDAMIYPRLKLKS 716
Query: 656 RCVSSATNGK-YDALQEIAVEGVSYL--EMSDKTDRGSEDLTLDQVA-SSDQFQELMKVP 711
++ +GK D + E Y+ ++ DK + G L ++++ S++Q Q M
Sbjct: 717 EVFANVVDGKGTDFRIDNEDEAREYINKQIQDKKNNGKLQLKFEKISNSTNQSQLDM--- 773
Query: 712 ESSEASDF 719
+ S SDF
Sbjct: 774 QQSNISDF 781
>gi|66821527|ref|XP_644229.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
gi|60472422|gb|EAL70375.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
Length = 1400
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 265/489 (54%), Gaps = 50/489 (10%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250
++P L +LPFQ++ + F ++ G+CLI DEMGLGKT+QA+AI++ + S +L++C
Sbjct: 708 RIPVELFSTLLPFQMKSLSFCTQQLSGKCLIGDEMGLGKTIQALAISSYYRSEWPLLIIC 767
Query: 251 PAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKSMI 309
P+ LRLSW++E+E+W P DI+++ + + V + SY ++ RL K ++
Sbjct: 768 PSSLRLSWSKEVEKWFP---SVDINVIMTGEDKANAM-----VNICSYDLVGRLLEKELL 819
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + +I DESH+++ SE + K VL + K +LL+GTP+LSRP ++F Q
Sbjct: 820 PRAFKAIICDESHYMK----NSEAKRTKNVLKLVHTAKIRILLTGTPALSRPVELFPQ-- 873
Query: 370 MLWPGLLGKAKY----DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
ML LG + Y DF YC+ ++G D++ L+EL VL++ VMIRR
Sbjct: 874 ML---ALGASIYPTLNDFGLRYCN-----AFKGIYGWDYTGNSHLQELYVLIR-GVMIRR 924
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG-VINDSEKDATNDKTPKDSDEHDDSG 484
LK +L LPPK R I++++ + VG V + S K + + K + + G
Sbjct: 925 LKNDVLKDLPPKVR--IKVVVDTPTPKDVQNEVGSVFSKSNKLSMIQQFQKQPNANSIGG 982
Query: 485 ACCRLGKIS----YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
K Y E G AKL +++ I++ ++ K ++FAHH
Sbjct: 983 GGGGGQKDKIMHLYVETGRAKLKASSDYI--------------INLIKKNEKFLVFAHHA 1028
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+++G++E I G G++RIDG+T RQ+ V FQ + K+A++ ITA G GL ++
Sbjct: 1029 DIMNGLEEAIKSTGAGYIRIDGSTPAVQRQAFVTKFQNNASCKVALLSITAAGTGLTLTA 1088
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
+ VVF+EL +P ++ QAEDR HR GQT I+ K+T D+ W + L +
Sbjct: 1089 SNLVVFVELYWTPGVLRQAEDRIHRIGQTKTCYIHYLIGKNTLDDRIWPTICNKLEVLGE 1148
Query: 661 ATNGKYDAL 669
+G+ + L
Sbjct: 1149 TLDGQEEVL 1157
>gi|145542730|ref|XP_001457052.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424866|emb|CAK89655.1| unnamed protein product [Paramecium tetraurelia]
Length = 767
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 287/538 (53%), Gaps = 44/538 (8%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++ K+L D + +Q + V+ GL+ GR LIAD+MG+GKT+Q++A+A+ + +L++CP
Sbjct: 124 QIDKTLEDTLYEYQKDCVKQGLKFNGRILIADDMGVGKTVQSLALASMYKQNWPLLIMCP 183
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+ LRL+W +E+ WL DI L+ R + ++VV+SY + +++ +++ +
Sbjct: 184 SPLRLNWQDEIIHWLKIH-KTDIQLINCGREG---IRMNAKIVVVSYDICAKIKDNLMNR 239
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKA--VLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + I DE H+++ P +++ + + + + +LL+GTP+LS+P D+F+ +N
Sbjct: 240 KFQICIADECHYLKS------PSSIRSQVCVPILRQCMQTILLTGTPALSKPKDLFNLLN 293
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
++ P + G K +F YCD K + +G DF L+EL LL+ +MIRR K+
Sbjct: 294 IIRPDIFGNFK-EFGYRYCDPKLSRFTKGI---DFDGASNLKELYFLLRNYIMIRRQKKD 349
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QLP KRR +R+ + S++ A + + + + +K ++ D S +
Sbjct: 350 VLSQLPEKRRVKVRIPGETSQVKQIGALLNQLGNIDIQQLINKDTIFQEQKDQSEQLLTI 409
Query: 490 GKI---SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
I Y G AK+ ++++ + E++ K + FAHH VLD V
Sbjct: 410 NSILQKCYMLTGQAKIKAIKDYIC---TLFENEI-----------KFLFFAHHQDVLDAV 455
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
QE+ + I ++RIDGN R V FQ ++E++IAI+ +T+ G+ ++A +VF
Sbjct: 456 QEYCVQNEIQYMRIDGNVGVEQRHLNVQMFQNNDEIRIAILSVTSANYGITLTAASTIVF 515
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
E+ +P++MLQAEDRAHR GQ V+ + T D+ + + + VS+ +G+
Sbjct: 516 GEMHWTPAIMLQAEDRAHRIGQVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFIDGQK 575
Query: 667 DAL-------QEIAVEGVSYLEM-SDKTDRGSEDLTL---DQVASSDQFQELMKVPES 713
L +E V+G S + SDK + +D + +Q + D QE+ ++ ES
Sbjct: 576 QNLGALEFSAEEALVKGTSKPTLVSDKGESILQDGNIQPSNQALTEDDMQEIYQLLES 633
>gi|156101331|ref|XP_001616359.1| helicase [Plasmodium vivax Sal-1]
gi|148805233|gb|EDL46632.1| helicase, putative [Plasmodium vivax]
Length = 877
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 197/633 (31%), Positives = 321/633 (50%), Gaps = 93/633 (14%)
Query: 104 RRLGQWLSDVMPSHYTQNNSGGKACV-YKLRDYNPVLTCLKNSAGI--EVEGIPWVTLNV 160
+ L + LS+ P+ NN +C+ ++ Y VL+ LK I ++ IP L
Sbjct: 211 KELFKILSEFNPTLKKTNNY---SCITFEADKYEYVLSNLKEKCTILGGIQSIPNFLLKC 267
Query: 161 ------------VEKLSHSIDTGRWNPCRPEHLSDEVVDEMIG-KLPKSLLDVILPFQLE 207
V +++ SI T P ++ + +D ++G KL L + FQ E
Sbjct: 268 FKQYSRFSEPQKVSEMTASILTSTLCPYTKKNY--DKMDILVGDKLSAELKN----FQRE 321
Query: 208 GVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLP 267
GV FGL++ GR LI DEMGLGKTLQA+A+ A + +VVCP+ +R W ++ RWL
Sbjct: 322 GVFFGLKKNGRVLIGDEMGLGKTLQALALMAFYQEDWPFIVVCPSSIRFQWKDQALRWLS 381
Query: 268 FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR-- 325
L D V ++ + R ++++ISY ++ + K + + ++ DESH+++
Sbjct: 382 HLLTEDQICVV--KSGKTDVPRNCKMIIISYELMTKNDK--YQNKYKSIVCDESHYLKNS 437
Query: 326 CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAK 385
SKRT KA+ + KR VLLSGTP+L++P +++ Q++ + P L ++F +
Sbjct: 438 FSKRT------KAITPIIRSAKRCVLLSGTPALNKPSELYEQVSSIIPNLFNY--HEFCE 489
Query: 386 TYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
YC K Y ++ ++ EEL++ L T+MIRRLK+ +L +LP K R I +
Sbjct: 490 RYC-FKDKNIYTRKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPEKLRSKIPVE 546
Query: 446 L---KRSEIVS------AKAAVGVINDSEK------------DATNDKTPKDSDEHDDSG 484
+ + SEI++ +K + + +D ++ T P DE + S
Sbjct: 547 IPPKELSEIITYHRKLESKKNINISDDLDELPFPSGGNEYGYGQTASGIPNRGDEENVS- 605
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
L K++ G AK+ +E+++ D D+ K ++F HH V+D
Sbjct: 606 -ISHLFKMT----GYAKVKAIKEYITY---------LIDADI-----KFLLFCHHKLVMD 646
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ +F+ EK F+R+DG T R+ + SFQ + VKIA++ +TA G+GL+ ++A V
Sbjct: 647 EIDDFLREKKTMFIRVDGLTPIEKREVYIKSFQNDDHVKIALLSLTACGIGLNLTAANTV 706
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VF EL P ++QAEDRAHR G T VNI+ A++T DE W+ +N+ +++A N
Sbjct: 707 VFGELYWVPGQIIQAEDRAHRIGTTHEVVNIHYLIAQNTIDEIVWKIINRKWNTLTTALN 766
Query: 664 GKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
G D+L V +K D+ DLT D
Sbjct: 767 GMEDSLNVKEV---------NKFDKFMIDLTND 790
>gi|188536006|ref|NP_001120938.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Danio rerio]
gi|221222756|sp|B2ZFP3.1|SMAL1_DANRE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; AltName:
Full=Sucrose nonfermenting protein 2-like 1
gi|187373311|gb|ACD03327.1| Smarcal1 [Danio rerio]
Length = 807
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 174/521 (33%), Positives = 268/521 (51%), Gaps = 51/521 (9%)
Query: 129 VYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L DY ++ L +E E +P L S T P PE +D
Sbjct: 277 TFLLEDYGKLMADLNELPTVETEPLPHAVLQSFS--SQFEKTQSQAPVPPE--AD----- 327
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ + L ++PFQ +GV F + R GR L+AD+MGLGKT+QAI IAA + S +LV
Sbjct: 328 -LSHIDPQLTRSLMPFQRDGVNFAVSREGRLLLADDMGLGKTVQAICIAAYYRSEWPLLV 386
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +WAE RWLP P I++V +++ R + +ISY +L+++ K
Sbjct: 387 VAPSSVRFTWAEAFRRWLPSVKPDSINVVVKGKDS----LRSGLINIISYDLLNKMDKQP 442
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ ++I+DESH ++ K +A L + KR++LLSGTP++SRP +++ QI
Sbjct: 443 PSSPFNVIIMDESHFLKNMKTA----RCRAALPLLKTAKRVILLSGTPAMSRPAELYTQI 498
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P L + +DF YCD K + G+ D+S L EL +LL++++M+RRLK
Sbjct: 499 QAVRPALFPRF-HDFGTRYCDAKQLPWGW------DYSSSSNLTELKLLLEESLMLRRLK 551
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLP K+R+++ + IN K A N + + + +
Sbjct: 552 SEVLSQLPAKQRKVVTV------------TTDGINSRTKAALNAAARELAKGYHNKSQEK 599
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ + AK+ E++S D+ R K ++FAHH VLD +
Sbjct: 600 EALLVFFNHTAEAKIRAIMEYIS------------DMLECGR-EKFLVFAHHKLVLDSIT 646
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ + EK I F+RIDG+T +RQ FQ S + +A++ ITA +GL SA VVF
Sbjct: 647 KELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITAANMGLTLHSAALVVFA 706
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
EL +P +++QAEDR HR GQTS V+I+ AK T D+ W
Sbjct: 707 ELFWNPGVLIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLW 747
>gi|402892027|ref|XP_003909225.1| PREDICTED: zinc finger Ran-binding domain-containing protein
3-like, partial [Papio anubis]
Length = 512
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 253/489 (51%), Gaps = 39/489 (7%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
D+++ LP L +LPFQ +G+ F L+R GRC++ADEMGLGKT+QAI IA + +
Sbjct: 23 DKLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGIAYFYKEEWPL 82
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V P+ LR W EE+E+W+P P +I+++ V +V V+ Y +L +
Sbjct: 83 LIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTDVRRISTSKVTVLGYGLLTADAE 140
Query: 307 SMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++I+ Q++ ++IVDESH+++ T + +L V K +R +LL+GTP+L RP
Sbjct: 141 TLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPVVQKARRAILLTGTPALGRPE 196
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ + G+ D + D G + Q D L EL+ LL +M
Sbjct: 197 EVLQSLYSELKRREGRWA-DHEARWADHLRYFGKRPQW--DCRGASNLNELHQLLSD-IM 252
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHD 481
IRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 253 IRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAMET 305
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 306 VMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLS 348
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+L E + E ++RIDG +R V+ FQ + ++AI+ I A G GL F++A
Sbjct: 349 MLQACTEAVIENKTRYIRIDGGVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAA 408
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 409 SHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGST 468
Query: 662 TNGKYDALQ 670
NG+ + +Q
Sbjct: 469 LNGRKEKIQ 477
>gi|326426540|gb|EGD72110.1| hypothetical protein PTSG_11548 [Salpingoeca sp. ATCC 50818]
Length = 930
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 252/471 (53%), Gaps = 46/471 (9%)
Query: 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEE 261
L ++ EGV+F +R GR LI DEMGLGKT+QAIA A F +L++ P+ ++ SW +E
Sbjct: 3 LDWKREGVQFAIRNCGRVLIGDEMGLGKTVQAIATAWVFRHEWPLLIIVPSSVKGSWIDE 62
Query: 262 LERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVD 319
LE+WLP P D ++V + HL R R+ +++Y +L + L + E + ++IVD
Sbjct: 63 LEKWLPTLQPMDFNVVRSG-TDVAHLDR--RITLVTYGLLQQAVLAARIAEAGFKVIIVD 119
Query: 320 ESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA 379
ESH+V+ K + K ++ + + +R +LLSGTP+LSRP +++ Q++ L G G
Sbjct: 120 ESHYVKNRK----AKRSKVIVPLLQQSRRCLLLSGTPALSRPEELYCQLDALCAGHFGSF 175
Query: 380 KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
+A+ YC+ K G+ D L+EL+ L+ +MIRRLK+ +L QLPPKRR
Sbjct: 176 TA-YARRYCNAK-----MGRFGWDTKGASNLDELHARLRSGIMIRRLKKDVLSQLPPKRR 229
Query: 440 QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499
Q + + + ++ A N+ DSD + RL + + +
Sbjct: 230 QRVTVEVTNKKLCKLLEA----------GFNELKRLDSDPNTQQFESHRLLQSLFHDTST 279
Query: 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
AK+ G D K ++FA+HL +L ++E ++ +G+ ++
Sbjct: 280 AKMD---------------SGMCDA-----GGKFLVFAYHLNMLKALEEAVASQGVEYIM 319
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
I G T +R V FQ SN ++AI+ + A G+ ++A VVF EL +P ++ QA
Sbjct: 320 IVGETPVHERHDMVKKFQASNRCRVAILSLLAASQGITLTAASTVVFAELHWTPGIIEQA 379
Query: 620 EDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
EDRAHR GQT ++VNI+ A +T D+ W L++ + VS+ NG+ L
Sbjct: 380 EDRAHRIGQTDTSVNIHYLVAPNTLDDILWSTLSRKVGVVSTTLNGERSRL 430
>gi|391333537|ref|XP_003741169.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Metaseiulus occidentalis]
Length = 647
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 203/690 (29%), Positives = 329/690 (47%), Gaps = 105/690 (15%)
Query: 3 ITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADP 62
++EE RQR E N+ ALA+RK +++A R+++ R+ P P + A
Sbjct: 4 LSEELRQRIEFNKAQALARRK-----------QKEAERIAQSREPQLNPVPAPDPSAAPR 52
Query: 63 NSTTQL--PENFRVRLEICSPDSFSVTPLAIEGF-------------------------- 94
+T NF +F T A+ F
Sbjct: 53 GVSTHHGNASNF------FGKKTFENTSRAVSTFHKAQVGPTKDTKAPKKEAAKTTGMCF 106
Query: 95 VYPGEEECLR-RLGQWLSDVMPSH-YTQNNSGGKACVYKLRDYNPVLTCLKNSAG-IEVE 151
+ GEE L+ Q L D+ SH + + + V+KL + +L K A + +
Sbjct: 107 LLSGEEFRLQCGFNQALIDLFKSHPKGRLDPTTRNYVFKLECHESLLNAAKKVAPEVTIT 166
Query: 152 GIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF 211
G+P ++ R N +P D VD + + L ++PFQ EGV
Sbjct: 167 GLPLFISKML----------RSNIKQP----DSQVD--LRSIDPKLRKALMPFQTEGVVR 210
Query: 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP 271
G+ + G+ LIAD+MGLGKT+Q++AIA+ + +L+VCP+ +R +W + + +WLP
Sbjct: 211 GISQNGKILIADDMGLGKTVQSLAIASYYREEWPLLIVCPSSMRFNWRQAIVQWLPSLTE 270
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
DI ++ N P+ +VV+ SY M+ R + ++ ++ +LI DESH ++ K
Sbjct: 271 DDIQVIV-KTNEPLGAN---QVVITSYEMMGRRSEDLLGGNFKVLIFDESHFLKNYK--- 323
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+ K +++A+ +RI+LLSGTP+LSRP +++ QI L L + YDFA YC+ +
Sbjct: 324 -SQRTKVAQELSAESRRIILLSGTPALSRPVELYPQIRCLALKHL-PSIYDFAARYCNAR 381
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
+ + D S LEEL++LLK +MIRRLK +L QLP K+R + L+ +
Sbjct: 382 -----ETRFGLDMSGSSNLEELHILLKAIIMIRRLKSEVLDQLPAKQRNV---LILDPTL 433
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511
V AK A D+ ++ DS++ + RL E+ + + E L
Sbjct: 434 VDAKDAQA---DNYSLLLQKESLTDSEKRSALMSYFRLT----SEMKRKAVCKYIEEL-- 484
Query: 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
ESD K ++FAHH +L+ + E +++K + ++RIDG RQ+
Sbjct: 485 ----LESDC-----------KFLVFAHHQYLLNALAEVLTKKKVKYIRIDGKVSSEARQT 529
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
FQ S+ ++A++ ITA G+ +A VVF EL +P ++ QAEDR HR GQT
Sbjct: 530 LCEEFQTSDACRVALLSITAANAGITLHAASLVVFAELFWNPGILTQAEDRVHRIGQTQT 589
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+ A+ T D+ W + L ++ A
Sbjct: 590 CLVTYLIARGTADDFIWPIIEGKLSVLNRA 619
>gi|327287818|ref|XP_003228625.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Anolis carolinensis]
Length = 960
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 263/465 (56%), Gaps = 40/465 (8%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
+++ ++PFQ EGV F + R GR L+AD+MGLGKT+QAI IAA + +LV+ P+ +R
Sbjct: 470 VVNSLMPFQREGVNFAISRDGRLLLADDMGLGKTIQAICIAAYYQKEWPLLVIAPSSVRY 529
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+WAE RWLP L AD V + + + R + ++S+ +L ++ K + + + ++
Sbjct: 530 TWAEAFHRWLP-SLSADTISVIATGKDCL-MARL--INIVSFDLLSKMEKQL-KTTFQVV 584
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
IVDESH ++ K +A + + KR++LLSGTP++SRP +++ Q+ + P
Sbjct: 585 IVDESHFLKNGKTA----RCRAAMPLLKAAKRVILLSGTPAMSRPAELYTQMAAVRPFSF 640
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPP 436
+ + F YCD K Q D+S L EL +LL++++MIRRLK ++L QLP
Sbjct: 641 SQF-HAFGLRYCDAK-----QRPWGWDYSGSSNLGELKLLLEESIMIRRLKSNVLSQLPA 694
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
K+R ++++ E ++A+ + +++ A K+ ++ E + Y
Sbjct: 695 KQR---KMVVVAPEGINARTKAELAAAAKEMAKGYKSKQEEKE---------ALLLFYNR 742
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
AK+ E++ D+ + K ++FAHH VLD + E +++K IG
Sbjct: 743 TAEAKIHCIIEYI------------LDL-LESGKEKFLVFAHHKLVLDAIAEALAKKHIG 789
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
++RIDG+T +RQS FQLS ++ +A++ +TA +GL SSA VVF EL +P ++
Sbjct: 790 YIRIDGSTPSAERQSLCQEFQLSEKLSVAVLSLTAANMGLTLSSADLVVFAELFWNPGVL 849
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+QAEDRAHR GQTS+VNI+ AK T D+ W + + +R + A
Sbjct: 850 IQAEDRAHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIRVLGEA 894
>gi|443705177|gb|ELU01833.1| hypothetical protein CAPTEDRAFT_109109 [Capitella teleta]
Length = 568
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 184/562 (32%), Positives = 291/562 (51%), Gaps = 81/562 (14%)
Query: 120 QNNSGGKACVYKLRDYN---PVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPC 176
Q + K + L +Y+ P L+ L N+A +EG+P L + + H GR
Sbjct: 40 QYDPATKRWTFDLSEYHDLVPGLSALSNAA--RIEGLPRGVLLTFDDVVH----GR--TS 91
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI 236
P + + VD + + L + +LPFQ + FG+ R GR LIAD+MGLGK+LQA+A+
Sbjct: 92 TPNFIPE--VD--LSCIDAPLAETLLPFQRHAINFGVYRNGRLLIADDMGLGKSLQALAL 147
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
AA + S +LVVCP+ +R +W E + +WLP P I++V R+ LT +V +I
Sbjct: 148 AAYYRSEWPLLVVCPSSVRFAWREHVLKWLPSVEPQYINVVVSGRDP---LTS-GKVNII 203
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ R K M + ++I+DESH ++ K +A + + +R++LLSGTP
Sbjct: 204 SYDLMARRVKDM--DAFKVVIMDESHFLKNIKAV----RTQAAVTLLKAARRVILLSGTP 257
Query: 357 SLSRPYDIFHQIN----MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLE 411
+LSRP ++F QI+ ++P + ++ YCD K Q G+ D+S L
Sbjct: 258 ALSRPQELFTQISSVDHKVFPRFM-----EYGLRYCDAKKTQWGW------DYSGSSNLH 306
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDA 468
EL ++L++ +MIRRLK+ ++ QLP K R ++ L LKRS + A + E D
Sbjct: 307 ELQLVLEERIMIRRLKKDVMSQLPAKFRTMVVLDPGSLKRSRDIKA-------SQKEFDI 359
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISY-QELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+G+ R + Y E K E++ +D+
Sbjct: 360 A-------------TGSDRRSALLQYFHETASVKSKAVTEYI--------------MDLL 392
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K+++FAHH +VLD ++ +S+K ++RIDG T R ++FQ ++ V++AI+
Sbjct: 393 EADRKLLVFAHHREVLDALENAVSKKH-EYIRIDGRTSSEARDGLANNFQTNDSVRVAIL 451
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
ITA GL ++A VVF EL +P ++ QAEDR HR GQ +V + AKDT D+S
Sbjct: 452 SITAANAGLHLTAANLVVFAELFWNPGILAQAEDRVHRIGQEDSVTVQYLVAKDTADDSL 511
Query: 648 WQNLNKSLRCVSSATNGKYDAL 669
W + L ++ A K DA+
Sbjct: 512 WPLIQNKLDVLNKAGLSK-DAM 532
>gi|417405377|gb|JAA49400.1| Putative chromatin remodeling protein harp/smarcal1 dead-box
superfamily [Desmodus rotundus]
Length = 947
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 177/527 (33%), Positives = 279/527 (52%), Gaps = 55/527 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + + L+ +LPFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 409 LTADVPEADLSGVDPKLVSNLLPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 468
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + +WLP P I++V ++ LT V ++S+ +
Sbjct: 469 RKEWPLLVVVPSSVRFTWEQAFLQWLPSLNPEHINVVVTGKDR---LTA-GLVNIVSFDL 524
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K I+ + ++I+DESH ++ K +A + + KR++LLSGTP++SR
Sbjct: 525 LSKLEK-QIKTPFKVVIIDESHFLKNIKTA----RCRAAMPLLKVAKRVILLSGTPAMSR 579
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT-VQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K G+ D+S L EL +LL++
Sbjct: 580 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKKHAWGW------DYSGSSSLGELKLLLEE 632
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+++ + R +SAKA + A + T KD +
Sbjct: 633 AVMLRRLKADVLSQLPAKQRKMVVVAPGR---ISAKARASL-----NAAAKEMTTKDQSK 684
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 685 GQQRAALI----LYFNRTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAHH 727
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD V E + +K + +RIDG+T DR S FQLS +A++ ITA +GL FS
Sbjct: 728 KVVLDAVTEALEKKQVQHIRIDGSTSSADRDSLCQQFQLSKGHAVAVLSITAANMGLTFS 787
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQ+S+V I+ A+ T D+ W + + ++
Sbjct: 788 SADLVVFAELFWNPGVLMQAEDRVHRIGQSSSVGIHYLVARGTADDYLWPLIQEKIKV-- 845
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
L E V S+ EM++ TD +D T ++ D FQ+
Sbjct: 846 ---------LGEAGVSEASFSEMTEATDYIYKDPTQRKI--YDLFQK 881
>gi|383861210|ref|XP_003706079.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Megachile rotundata]
Length = 675
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 263/523 (50%), Gaps = 63/523 (12%)
Query: 130 YKLRDYNPVLTCLKN-SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L+DY V+ + N I+V G+P + + + K ++S E++ DE +D
Sbjct: 116 FNLKDYETVMEKIINFKTDIQVIGLPKIVIELFRKNNNS-----------ENI-DENID- 162
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ K+ LL ++PFQ +G+ +G+ + GRC+IAD+MGLGKT+QA+ IA F +L+
Sbjct: 163 -LSKIDPQLLSSLMPFQRKGICYGISKRGRCMIADDMGLGKTIQALGIAHYFKENWPLLI 221
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ P+ +R W + + +LP +PA F N ++V+ SY +L R +
Sbjct: 222 IVPSSVRYQWTDAIYTFLP-SVPAQYVHQFA---NTKDFITGNKIVITSYDLLVRAVDAF 277
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ +I+DESH ++ K KA + +K +VLLSGTP+LSRP +++ QI
Sbjct: 278 ERHTFGFVILDESHALKSVKTA----RYKAAQRIVSKACHVVLLSGTPALSRPIELYSQI 333
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+++ +G +Y YC G + DF+ ++EL +LLK T +IRRLK
Sbjct: 334 SLIMRNFMGYQEYGIR--YC-----AGEKSSFGWDFTGSSNMQELQLLLKCTCVIRRLKN 386
Query: 429 HLLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+L +LP K+R++I L L+K +G E A +++ E ++
Sbjct: 387 EVLEELPSKKREVIVLDPDLIK----------IGTKEMKEISAKLERSSLTGMERHNTLL 436
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
Y E IAK ++++ ++ R K IIFAHH +LD
Sbjct: 437 Q------YYNESSIAKQKAICDYVT--------------NLLRRKQKCIIFAHHQNILDA 476
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+ E I ++RIDG T P R+ V FQ S+ +AI+ ITA G+ ++AQ VV
Sbjct: 477 ISEVAESMDIKYIRIDGKTNPERRKYQVDKFQTSDAYLVAILSITAANAGITLTAAQLVV 536
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
F EL +P ++ QAEDR HR GQ V I AK T D+ W
Sbjct: 537 FAELFWNPGVLCQAEDRVHRIGQNENVVIQYLVAKQTADDYLW 579
>gi|414887794|tpg|DAA63808.1| TPA: hypothetical protein ZEAMMB73_058078 [Zea mays]
Length = 692
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/494 (32%), Positives = 257/494 (52%), Gaps = 60/494 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P L ++PFQ EG+RF L+ GGR LIADEMGLGKTLQAIA+A+C A +L +
Sbjct: 207 RIPPHLESKLMPFQREGIRFVLQHGGRALIADEMGLGKTLQAIAVASCLRDAWPVLAIQ- 265
Query: 252 AILRLSW----AEELERWLPFC---LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
SW E++ LP A + + + HL VISY ++ ++
Sbjct: 266 -----SWLNIPVEDILVVLPHTGGSHKAGFRVAYSNSKGDFHLDGV--FNVISYDVVPKI 318
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP+LSRP ++
Sbjct: 319 QSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTPALSRPIEL 374
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F QI L+P + K+ ++ YC +G F + EEL+ L+K TVMIR
Sbjct: 375 FTQIQALYPTVY-KSVSEYGNIYC--------KGGFFGLYQGASNHEELHNLMKATVMIR 425
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK+ +L QLP KRRQ + L L ++ + +A +T K E DS
Sbjct: 426 RLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKVKIESSDSK 475
Query: 485 ACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+ +YQ + +AK+ ++L +I E K +IF
Sbjct: 476 EMIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLGT--MIEEG------------CKFLIF 521
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
AHH ++D +++ + +K + ++IDG T RQ+ V FQ +++VK A++ I AGG G+
Sbjct: 522 AHHQPMIDAIEKHLLKKKVKCIKIDGKTPLTTRQTLVTDFQNNDDVKAAVLSIKAGGYGI 581
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
++A V+F EL +P ++QAEDRAHR GQ S+VN+Y + T D+ W + L
Sbjct: 582 TLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNVYYLLSNGTIDDLMWDVVQGKLE 641
Query: 657 CVSSATNGKYDALQ 670
+ +G+ L+
Sbjct: 642 NLGQMLDGQEKTLE 655
>gi|403376129|gb|EJY88044.1| SNF2 family N-terminal domain containing protein [Oxytricha
trifallax]
Length = 1118
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 179/610 (29%), Positives = 320/610 (52%), Gaps = 55/610 (9%)
Query: 67 QLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGK 126
Q P+ F + E+ + D F + F +P EE ++ + S Q + K
Sbjct: 191 QQPQRF-INFELINSDLFDI----FSNFPFP--EEIIQVIKAQKS-------VQYDFSRK 236
Query: 127 ACVYKLRDYNPVLTCLK---NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSD 183
V L Y +L +K + I V IP + ++++ + + ++ D
Sbjct: 237 TWVLSLLSYGEMLQQVKQLVDKRNILVYEIPQLAFDLIDNPVPFSSPHIKSLVQYDYKKD 296
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
+ + +LP L + FQ G++FG+ GR L+ DEMG+GKT+QAI+++ +
Sbjct: 297 NYIKPRLNQLPSQLQKKLYNFQKVGIQFGVDHYGRLLLGDEMGVGKTVQAISLSYLYQRD 356
Query: 244 GSILVVCPAILRLSWAEELERWL-PFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
+L++ P+ L+ SW +EL +WL P ++I ++ + N ++ +ISY++
Sbjct: 357 WPVLIISPSSLKYSWRDELMKWLEPKIQASEICVII--KENQEFVSSEINFYIISYSLAW 414
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++ + + + ++ ++IVDE+H+++ + E + + +L + + KRI+LL+GTP L RP
Sbjct: 415 KMSELLSQLNFKVVIVDEAHYLK----SRESKRSQHLLPIIMRSKRIMLLTGTPMLGRPN 470
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+I++ + +L P + K +F YC+ K T+ G D++ + ELN+LLK+ +
Sbjct: 471 EIYNLLKILRPDVFRSFK-EFGTRYCNPKETIFGV------DWTGQSNMVELNLLLKKCL 523
Query: 422 MIRRLKQHLLVQLPPKRRQ-IIRLLLKRSEIVSAKAAVGVIN---DSEKDATN-DKTPK- 475
MIRRLK +L +LP KRRQ I+ + +RS+ +K V E+D DK K
Sbjct: 524 MIRRLKNEVLFELPAKRRQKIVVNVDERSQRKISKYLKQVKKWEYKIEEDFQELDKVDKL 583
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++E +D + +Y G+AKL G +++ I +I DG+ K ++
Sbjct: 584 QANEVEDKYSYILR---AYSLTGMAKLKGIQQF--IDTLI---DGSV---------KFLL 626
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHH VLD ++++I +K + ++RIDG + R AV +Q N+ ++A++ +TA G
Sbjct: 627 FAHHYDVLDQLEDYIVKKSVSYIRIDGRIDNKKRHEAVKKYQSDNKCQVALLSLTASSQG 686
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ ++A VVF E+ +P +M+QAEDRAHR GQTS+V IY + T D+ + L
Sbjct: 687 ITLTAASIVVFAEMNWTPGIMVQAEDRAHRIGQTSSVLIYYIYGEGTLDKLIYPRLQVKS 746
Query: 656 RCVSSATNGK 665
+S+ +G+
Sbjct: 747 EVISTIVDGQ 756
>gi|410897084|ref|XP_003962029.1| PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like
protein 1-like [Takifugu rubripes]
Length = 813
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 172/519 (33%), Positives = 267/519 (51%), Gaps = 49/519 (9%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ L A +EVE +P +V+ S R++ P+ + D
Sbjct: 259 FSLEDYRRLMDLLSKIAAVEVEPLPRA---IVQAFS-----ARFDGTEPDLQTXPEAD-- 308
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + +L ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + S +LVV
Sbjct: 309 LSSIDPTLTCSLMPFQREGVNFAVSKQGRLLLADDMGLGKTVQAICIAAYYRSEWPLLVV 368
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +WAE RWLP I++V +++ + V +ISY +L R+ K
Sbjct: 369 APSSVRFTWAEAFRRWLPSLSDDSINVVVKAKDS----LQSGLVNIISYDLLSRIEKQHS 424
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ +LI+DESH ++ K KA L + KR++LLSGTP++SRP +++ QI
Sbjct: 425 GSRFNVLIMDESHFLKNMKTA----RCKAALPLLKAAKRVILLSGTPAMSRPSELYTQIL 480
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ P LL ++F YCD K Q D+S L EL +LL++++M+RRLK
Sbjct: 481 AVRP-LLFPRFHEFGLRYCDAK-----QSTWGWDYSGSSNLGELKLLLEESLMLRRLKSD 534
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QLP K+R+++ + IN K A + + S H +
Sbjct: 535 VLAQLPAKQRKVVTV------------TTDSINSRIKAALSAAAKQLSKGHQNKKEEKDA 582
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+ Y AKL E+++ D+ R K ++FAHH VLD +
Sbjct: 583 LLVFYNHTAEAKLQAIMEYIT------------DMLEGGR-EKFLVFAHHKLVLDHITAE 629
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ +K ++RIDG+T +RQ FQ S +A++ ITA +GL SA V+F EL
Sbjct: 630 LEKKNASYIRIDGSTPSAERQQLCEKFQFSTNSCVAVLSITAANMGLTLHSADLVIFAEL 689
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+P +++QAEDR HR GQT+ VN++ AK + D+ W
Sbjct: 690 FWNPGVLIQAEDRVHRIGQTNNVNVHYLVAKGSADDHLW 728
>gi|237842313|ref|XP_002370454.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
ME49]
gi|211968118|gb|EEB03314.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
ME49]
gi|221502587|gb|EEE28307.1| helicase, putative [Toxoplasma gondii VEG]
Length = 1231
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 264/502 (52%), Gaps = 66/502 (13%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
+L+ + PFQLEG RFG++R GR L+ DEMGLGKTLQA+AIAA + LV+CP+ +R
Sbjct: 624 ALIKELKPFQLEGYRFGIQRNGRVLVGDEMGLGKTLQALAIAAFYHKEWPFLVICPSSIR 683
Query: 256 LSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W ++ RWL L D I LV R T ++V+ISY M+ + +K M+ +
Sbjct: 684 FQWRDQALRWLSELLVLDEICLVKSGRAEIPGRT---KMVIISYDMITKQKKFMVPYQAS 740
Query: 315 LL-----IVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
LL I DESH+++ +KRT +A+ + KR +LLSGTP+L+RP ++F Q
Sbjct: 741 LLWKKVVICDESHYLKNFQAKRT------QAICPLLKNAKRAILLSGTPALNRPVELFQQ 794
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL------EELNVLLKQTV 421
+ L P L TY + Y Q++ F++ EEL++LLK TV
Sbjct: 795 FDALLPDLC---------TYREF--ADRYSVQVWNPFTRHFEYEGHQHPEELHLLLKHTV 843
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
MIRRLK+ + +LP K R + + + E+ + I + + + P+ D
Sbjct: 844 MIRRLKEQVHSELPEKIRSRVPIEIPAKELKA-------IREKLAELEAEGQPESILNAD 896
Query: 482 DSGACCR----LGKIS---------YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+G R LG S + G+AK +G E+LS + DG
Sbjct: 897 GAGGVERASDGLGHRSSSSPLVTELFTLTGLAKRAGVCEFLSY--LFKGGDGGM------ 948
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K+I+FAHH VLD ++EF+ + +RIDG T R+ V FQ S ++A++
Sbjct: 949 ---KVIVFAHHRAVLDYIEEFLQAEAKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLS 1005
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESH 647
ITA G GL+ ++A VVF EL P M+QAEDR+HR G + S+V I+ A+ T DE+
Sbjct: 1006 ITACGHGLNLTAAGTVVFAELYWVPGQMIQAEDRSHRIGTEFSSVQIHYLIAEGTLDETV 1065
Query: 648 WQNLNKSLRCVSSATNGKYDAL 669
++ L + R ++S +G+ L
Sbjct: 1066 FRILQRKWRLMTSTLDGEQQQL 1087
>gi|432850159|ref|XP_004066741.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like
[Oryzias latipes]
Length = 1053
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 236/460 (51%), Gaps = 38/460 (8%)
Query: 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV 277
+C+IADEMGLGKT+QAIA+A + +LVV P+ L+ W EELERW+P P DI+LV
Sbjct: 14 KCMIADEMGLGKTVQAIAVAYAYRQEWPLLVVVPSSLKYPWIEELERWIPELQPGDINLV 73
Query: 278 FGHRNNPVHLTRF--PRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTS 331
N T +V V+ Y +L + ++E Q +++++VDESH+++ +
Sbjct: 74 ----ENKSQTTGICSSKVTVLGYGLLTTDARPLVEALTRQRFSVVVVDESHYLK----SR 125
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
K ++ + R +LL+GTP+L RP ++F QI+ L+P G D+AK YC+
Sbjct: 126 NAARTKILVPLIQSANRAILLTGTPALGRPEELFMQIDALYPRRFGTWT-DYAKKYCNAH 184
Query: 392 TVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE 450
Y G Q D LEEL+ L Q +MIRRLK +L QLPPK RQ I L +
Sbjct: 185 Y--RYFGPRRQWDCRGASNLEELHRRLSQ-IMIRRLKADVLTQLPPKIRQRIPFDLPKEA 241
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
A A+ K + E L Y++ IAK ++++
Sbjct: 242 AKEAAASFAEWERLMKGLGSGVADNPFTE------VMSLVTQMYKQTAIAKAGAVKDYIK 295
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
+ + K ++F HHL +L E E G++RIDG+ +R
Sbjct: 296 MM-------------LEAEQLKFLVFGHHLTMLQACTEAAIEAKAGYIRIDGSVPASERN 342
Query: 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630
VH FQ E+++AI+ I A G GL F++A +VVF EL +P + QAEDRAHR GQTS
Sbjct: 343 QLVHKFQNDPEIRVAILSIQAAGQGLTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTS 402
Query: 631 AVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+VN++ AK T D W LN+ S NG+ + L+
Sbjct: 403 SVNVHYLIAKGTFDTVMWSMLNRKETVTGSTLNGRKEYLK 442
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 102/262 (38%), Gaps = 46/262 (17%)
Query: 756 VSQYTGRIHLYSCVPGTDSRPRPLFESFRPEE--LDNTEHISGCLKENPGYRHAIQAFIN 813
SQYT RI+LYS D+ P L SF P + L N + + ++ R + +
Sbjct: 717 ASQYTDRIYLYS----KDAVPLNL--SFIPLDIKLTNWDDLPEAFSQHQENRIQVLKVVQ 770
Query: 814 EWNALRPIERTKLLGK----------------PLQLPLSVELCYLKE---TINHSSGGLL 854
EW+ L P + KLL + Q P S YL + S
Sbjct: 771 EWSGL-PAMKQKLLRRSGLLFHSPSLGLQELTAAQRPHSSTKRYLSRDEVALASLSKAQQ 829
Query: 855 KGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKK------------EKEYTQGWTIND 902
+GGS R T E A W+ S + E Y Q
Sbjct: 830 EGGSVRLVTK--ENFFTKRKSACWRAAAAAESSNDEQPSAATDRPPPTEAGYLQATDSCG 887
Query: 903 EPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQ 962
PLC CQ+ C + ++ FC+ +C +E+ LR+S ++R ++ E GVC +C
Sbjct: 888 VPLCLSCQQACLTTGGP----WDTRFCSNNCEKEFLLRSSQTYMRSQVLEAEKGVCQHCG 943
Query: 963 LDCHKLVKHIKPLSLEQRRKYI 984
L H L I+ QR++ +
Sbjct: 944 LHAHDLFLKIRDAPPSQRKEML 965
>gi|444708072|gb|ELW49191.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Tupaia chinensis]
Length = 1037
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 168/495 (33%), Positives = 268/495 (54%), Gaps = 55/495 (11%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAI 253
PK L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA + +LVV P+
Sbjct: 521 PK-LVSSLMPFQRAGVNFAVAKGGRLLLADDMGLGKTIQAICIAAVYRKEWPLLVVVPSS 579
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDW 313
+R +W + RWLP P I++V ++ LT V ++S+ +L +L K + + +
Sbjct: 580 VRFTWEQAFRRWLPSLSPDRINVVVTGKD---RLTA-GLVNIVSFDLLSKLEKQL-KTPF 634
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 635 KVVIIDESHFLKNLKTA----RCRAAMPILKVAKRVILLSGTPAMSRPAELYSQIIAVKP 690
Query: 374 GLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ + F YCD K + G+ D+S L EL +LL++ VM+RRLK +L
Sbjct: 691 TFFPQF-HAFGLRYCDAKRLSWGW------DYSGSSNLGELKLLLEEAVMLRRLKSDVLS 743
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
QLP K+R+++ + R S +AA ++ + K+ T DKT K E A +
Sbjct: 744 QLPAKQRKMVVVAPGRIS-ASVRAA---LDTAAKEMTTDKTKKQQKE-----ALI----L 790
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ AK+ E++ D+ + R K ++FAHH VLD + + + +
Sbjct: 791 FFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHHKVVLDAITKALEK 837
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
K + +RIDG+T DR+ FQLS +A++ ITA +GL SSA VVF EL +
Sbjct: 838 KHVQHIRIDGSTSSADREDLCQQFQLSERHAVAVLSITAANMGLTLSSADLVVFAELFWN 897
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEI 672
P +++QAEDR HR GQTS+V I+ A+ T D+ W + + ++ L E
Sbjct: 898 PGVLMQAEDRVHRIGQTSSVGIHYLVARGTADDYLWPMIQEKIKV-----------LGEA 946
Query: 673 AVEGVSYLEMSDKTD 687
+ ++ EM++ TD
Sbjct: 947 GLSETNFSEMTEATD 961
>gi|297669378|ref|XP_002812876.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 2
[Pongo abelii]
gi|297669380|ref|XP_002812877.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 3
[Pongo abelii]
Length = 954
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 275/513 (53%), Gaps = 53/513 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + A + T KD +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAAL-----DAAAKEMTTKDKTK 691
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 692 QQQKDALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELGRKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
L E + ++ EM++ TD +D
Sbjct: 853 ---------LAEAGLSETNFSEMTESTDYLYQD 876
>gi|355565164|gb|EHH21653.1| hypothetical protein EGK_04773 [Macaca mulatta]
Length = 949
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 184/574 (32%), Positives = 304/574 (52%), Gaps = 62/574 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + + L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 LAPDVPEADLSGVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 470
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 471 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 526
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 527 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 581
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 582 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 634
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 635 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQ---Q 688
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 689 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 729
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD V + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 730 KVVLDAVTQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 789
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 790 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 847
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPE 712
L E + ++ EM++ TD +D Q+ D FQ+ M++ E
Sbjct: 848 ---------LAEAGLSETNFSEMTESTDYLYKDPKQQQI--YDLFQKSFEKEGSDMELLE 896
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
++E+ D + + +++ L+ES SP
Sbjct: 897 AAESFDPGSASGTSGSSSQNTGDTLDESSLTASP 930
>gi|403352916|gb|EJY75987.1| DNA helicase, putative [Oxytricha trifallax]
Length = 1241
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 258/488 (52%), Gaps = 63/488 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP++L + + FQ +GV FG++R GR L+ DEMG+GKT+QA+A++ F +LV+CP+
Sbjct: 257 LPQNLRETLFQFQKDGVSFGIQRFGRFLLGDEMGVGKTVQALAVSCIFRDDWPLLVICPS 316
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR +W +E+ +WL P++I L+ ++ + ++ +ISY + ++ +++
Sbjct: 317 SLRYTWYDEILKWLQDIRPSEICLI---KSGKESIMNDAKIYIISYEIASKITDQFVKRG 373
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
IVDE+H+++ K ++ + +++KR+VLLSGTP L+RP ++F+ + M+
Sbjct: 374 IRFTIVDEAHYLKAHNSVRS----KNLVPILSRMKRLVLLSGTPMLARPAELFNLLKMVR 429
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P + + + +A YC+ K + Q D++ ++EL+ +L+ +MIRRLK+ +L
Sbjct: 430 PDIFQEF-FSYATRYCNPK-----ESQYGMDYTGASNIKELHHILEGKIMIRRLKKDVLK 483
Query: 433 QLPPKRRQI------------IRLLLKR--SEIVSAKAAVGVINDSEK----------DA 468
LPPK RQ IR +LKR S+ K +I D + +
Sbjct: 484 DLPPKIRQKIVVQTDKKYLMQIRAILKRDLSDAEERKNLENIIKDRNRRLAQQDQISING 543
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ + +D D +L K+ YQ G AKL G E++ D + V
Sbjct: 544 VSTEFQRDPQAELDDSEEKQLSKV-YQLTGKAKLKGIIEYV---------DYMIENQV-- 591
Query: 529 RSNKMIIFAHHLKVL--------DGVQEFISEKGI---GFVRIDGNTLPRDRQSAVHSFQ 577
K I+FAHH V+ + +QE + + + ++RIDG T R V FQ
Sbjct: 592 ---KFILFAHHQHVMSELENHLINRIQETENSQNLIPPKYIRIDGTTPTDIRHDLVREFQ 648
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
V++A++ IT+ G+ ++A V+F E+ +P+LM+QAEDRAHR GQ VNIY
Sbjct: 649 EDESVRVALLSITSSSQGITLTAASTVIFAEVHWTPALMMQAEDRAHRIGQNECVNIYYL 708
Query: 638 CAKDTTDE 645
K+T DE
Sbjct: 709 YGKETLDE 716
>gi|221485219|gb|EEE23509.1| hypothetical protein TGGT1_105260 [Toxoplasma gondii GT1]
Length = 1244
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 264/502 (52%), Gaps = 66/502 (13%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
+L+ + PFQLEG RFG++R GR L+ DEMGLGKTLQA+AIAA + LV+CP+ +R
Sbjct: 637 ALIKELKPFQLEGYRFGIQRNGRVLVGDEMGLGKTLQALAIAAFYHKEWPFLVICPSSIR 696
Query: 256 LSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W ++ RWL L D I LV R T ++V+ISY M+ + +K M+ +
Sbjct: 697 FQWRDQALRWLSELLVLDEICLVKSGRAEIPGRT---KMVIISYDMITKQKKFMVPYQAS 753
Query: 315 LL-----IVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
LL I DESH+++ +KRT +A+ + KR +LLSGTP+L+RP ++F Q
Sbjct: 754 LLWKKVVICDESHYLKNFQAKRT------QAICPLLKNAKRAILLSGTPALNRPVELFQQ 807
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL------EELNVLLKQTV 421
+ L P L TY + Y Q++ F++ EEL++LLK TV
Sbjct: 808 FDALLPDLC---------TYREF--ADRYSVQVWNPFTRHFEYEGHQHPEELHLLLKHTV 856
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
MIRRLK+ + +LP K R + + + E+ + I + + + P+ D
Sbjct: 857 MIRRLKEQVHSELPEKIRSRVPIEIPAKELKA-------IREKLAELEAEGQPESILNAD 909
Query: 482 DSGACCR----LGKIS---------YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+G R LG S + G+AK +G E+LS + DG
Sbjct: 910 GAGGVERASDGLGHRSSSSPLVTELFTLTGLAKRAGVCEFLSY--LFKGGDGGM------ 961
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K+I+FAHH VLD ++EF+ + +RIDG T R+ V FQ S ++A++
Sbjct: 962 ---KVIVFAHHRAVLDYIEEFLQAEMKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLS 1018
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESH 647
ITA G GL+ ++A VVF EL P M+QAEDR+HR G + S+V I+ A+ T DE+
Sbjct: 1019 ITACGHGLNLTAAGTVVFAELYWVPGQMIQAEDRSHRIGTEFSSVQIHYLIAEGTLDETV 1078
Query: 648 WQNLNKSLRCVSSATNGKYDAL 669
++ L + R ++S +G+ L
Sbjct: 1079 FRILQRKWRLMTSTLDGEQQQL 1100
>gi|355750822|gb|EHH55149.1| hypothetical protein EGM_04297 [Macaca fascicularis]
Length = 949
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 183/574 (31%), Positives = 304/574 (52%), Gaps = 62/574 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + + L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 LAPDVPEADLSGVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 470
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 471 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 526
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 527 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 581
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 582 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 634
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 635 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQ---Q 688
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 689 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 729
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 730 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 789
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 790 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 847
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPE 712
L E + ++ EM++ TD +D Q+ D FQ+ M++ E
Sbjct: 848 ---------LAEAGLSETNFSEMTESTDYLYKDPKQQQI--YDLFQKSFEKEGSDMELLE 896
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
++E+ D + + +++ L+ES SP
Sbjct: 897 AAESFDPGSASGTSGSSSQNTGDTLDESSLTASP 930
>gi|397495595|ref|XP_003818635.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 1 [Pan paniscus]
gi|397495597|ref|XP_003818636.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 2 [Pan paniscus]
Length = 954
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 QKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKT---KQQ 693
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 694 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|6693791|gb|AAF24984.1|AF082179_1 HepA-related protein HARP [Homo sapiens]
Length = 954
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 273/508 (53%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + A + T KD +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAAL-----DAAAKEMTTKDKTK 691
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 692 QQQKDALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|403336296|gb|EJY67338.1| DNA helicase, putative [Oxytricha trifallax]
Length = 1072
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 258/488 (52%), Gaps = 63/488 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP++L + + FQ +GV FG++R GR L+ DEMG+GKT+QA+A++ F +LV+CP+
Sbjct: 257 LPQNLRETLFQFQKDGVSFGIQRFGRFLLGDEMGVGKTVQALAVSCIFRDDWPLLVICPS 316
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR +W +E+ +WL P++I L+ ++ + ++ +ISY + ++ +++
Sbjct: 317 SLRYTWYDEILKWLQDIRPSEICLI---KSGKESIMNDAKIYIISYEIASKITDQFVKRG 373
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
IVDE+H+++ K ++ + +++KR+VLLSGTP L+RP ++F+ + M+
Sbjct: 374 IRFTIVDEAHYLKAHNSVRS----KNLVPILSRMKRLVLLSGTPMLARPAELFNLLKMVR 429
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P + + + +A YC+ K + Q D++ ++EL+ +L+ +MIRRLK+ +L
Sbjct: 430 PDIFQEF-FSYATRYCNPK-----ESQYGMDYTGASNIKELHHILEGKIMIRRLKKDVLK 483
Query: 433 QLPPKRRQI------------IRLLLKR--SEIVSAKAAVGVINDSEK----------DA 468
LPPK RQ IR +LKR S+ K +I D + +
Sbjct: 484 DLPPKIRQKIVVQTDKKYLMQIRAILKRDLSDAEERKNLENIIKDRNRRLAQQDQISING 543
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ + +D D +L K+ YQ G AKL G E++ D + V
Sbjct: 544 VSTEFQRDPQAELDDSEEKQLSKV-YQLTGKAKLKGIIEYV---------DYMIENQV-- 591
Query: 529 RSNKMIIFAHHLKVL--------DGVQEFISEKGI---GFVRIDGNTLPRDRQSAVHSFQ 577
K I+FAHH V+ + +QE + + + ++RIDG T R V FQ
Sbjct: 592 ---KFILFAHHQHVMSELENHLINRIQETENSQNLIPPKYIRIDGTTPTDIRHDLVREFQ 648
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
V++A++ IT+ G+ ++A V+F E+ +P+LM+QAEDRAHR GQ VNIY
Sbjct: 649 EDESVRVALLSITSSSQGITLTAASTVIFAEVHWTPALMMQAEDRAHRIGQNECVNIYYL 708
Query: 638 CAKDTTDE 645
K+T DE
Sbjct: 709 YGKETLDE 716
>gi|109100917|ref|XP_001086469.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 2
[Macaca mulatta]
gi|109100919|ref|XP_001086594.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 3
[Macaca mulatta]
Length = 949
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 183/574 (31%), Positives = 304/574 (52%), Gaps = 62/574 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + + L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 LAPDVPEADLSGVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 470
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 471 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 526
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 527 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 581
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 582 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 634
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 635 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQ---Q 688
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 689 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 729
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 730 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 789
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 790 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 847
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPE 712
L E + ++ EM++ TD +D Q+ D FQ+ M++ E
Sbjct: 848 ---------LAEAGLSETNFSEMTESTDYLYKDPKQQQI--YDLFQKSFEKEGSDMELLE 896
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
++E+ D + + +++ L+ES SP
Sbjct: 897 AAESFDPGSASGTSGSSSQNTGDTLDESSLTASP 930
>gi|332210006|ref|XP_003254102.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 1 [Nomascus leucogenys]
gi|332210008|ref|XP_003254103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 2 [Nomascus leucogenys]
Length = 954
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 273/508 (53%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + A + T KD +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAAL-----DAAAKEMTTKDKTK 691
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 692 QQQKDALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|383418731|gb|AFH32579.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Macaca mulatta]
Length = 949
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 183/574 (31%), Positives = 304/574 (52%), Gaps = 62/574 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + + L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 LAPDVPEADLSGVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 470
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 471 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 526
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 527 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 581
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 582 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 634
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 635 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQ---Q 688
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 689 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 729
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 730 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 789
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 790 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 847
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPE 712
L E + ++ EM++ TD +D Q+ D FQ+ M++ E
Sbjct: 848 ---------LAEAGLSETNFSEMTESTDYLYKDPKQQQI--YDLFQKSFEKEGSDMELLE 896
Query: 713 SSEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
++E+ D + + +++ L+ES SP
Sbjct: 897 AAESFDPGSASGTSGSSSQNTGDTLDESSLTASP 930
>gi|16741295|gb|AAH16482.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Homo sapiens]
gi|123981668|gb|ABM82663.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [synthetic construct]
gi|123996475|gb|ABM85839.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [synthetic construct]
Length = 954
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKT---KQQ 693
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 694 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|426338524|ref|XP_004033228.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 1 [Gorilla gorilla gorilla]
gi|426338526|ref|XP_004033229.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
isoform 2 [Gorilla gorilla gorilla]
Length = 954
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKT---KQQ 693
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 694 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|114583210|ref|XP_001153008.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 3
[Pan troglodytes]
gi|114583212|ref|XP_001153124.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 isoform 5
[Pan troglodytes]
gi|410207532|gb|JAA00985.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Pan troglodytes]
gi|410263512|gb|JAA19722.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Pan troglodytes]
gi|410292742|gb|JAA24971.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Pan troglodytes]
gi|410328995|gb|JAA33444.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Pan troglodytes]
Length = 954
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKT---KQQ 693
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 694 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|21071060|ref|NP_054859.2| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Homo sapiens]
gi|187761314|ref|NP_001120679.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Homo sapiens]
gi|60390962|sp|Q9NZC9.1|SMAL1_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; Short=hHARP;
AltName: Full=Sucrose nonfermenting protein 2-like 1
gi|18463933|gb|AAL73034.1|AF432223_1 SMARCAL1 [Homo sapiens]
gi|7861961|gb|AAF70454.1| HARP [Homo sapiens]
gi|27696616|gb|AAH43341.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Homo sapiens]
gi|62702171|gb|AAX93097.1| unknown [Homo sapiens]
gi|119590973|gb|EAW70567.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Homo sapiens]
Length = 954
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 53/508 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 416 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 475
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 476 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 531
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 532 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 586
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 587 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 639
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT +
Sbjct: 640 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKT---KQQ 693
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 694 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 734
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 735 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 794
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 795 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 852
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 853 ---------LAEAGLSETNFSEMTESTD 871
>gi|170592285|ref|XP_001900899.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158591594|gb|EDP30199.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 741
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 254/481 (52%), Gaps = 50/481 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+ K+L+D P+Q GV +G+ R GR L+ADEMGLGK++QA+ IA F +L++CP+
Sbjct: 258 IEKTLVDAFFPYQRRGVIYGVMRRGRLLLADEMGLGKSIQALGIARYFKCDWPLLIICPS 317
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
++ SW + E +LP + I + G P+ T+ VV++SY ++ + +IE D
Sbjct: 318 SVKFSWLNQFESFLP-AVGEIIVIEKGSDRLPLKKTK-QMVVIMSYDLMVSKQSHLIEYD 375
Query: 313 WALLIVDESHHVRCS--KRTSEPEEVKAVLDVA------AKVKRIVLLSGTPSLSRPYDI 364
+ +I DESH ++ S +RT + VL + K R++LL+GTP+LSRP ++
Sbjct: 376 FKAIIFDESHLLKDSNAQRTKVATNISHVLLLIIDQFTQKKALRVILLTGTPALSRPVEL 435
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F QI ++ + + DFA YCD G QG+ + +EL ++L TVM+R
Sbjct: 436 FSQIRIIDSKMFPNYR-DFAIRYCD-----GKQGKYSFEAKGCTNSDELAIILTGTVMLR 489
Query: 425 RLKQHLLVQLPPKRRQIIRL-----LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
RLK +L LP K+R+++ L S++ AKAA D ND + E
Sbjct: 490 RLKNDVLNDLPMKKREVVNLTDDSIYTNISKLREAKAAYSGAKD------NDTKHQRLVE 543
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
+ Y E GIAK ++ H DGA P+ K++IFAHH
Sbjct: 544 Y-------------YYETGIAKAKSVARYIIDHYFY---DGA------PK-KKVLIFAHH 580
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + +++KG+ +RIDG T R R FQ +++V +A++ ITA G+G+ +
Sbjct: 581 QVVLDMISIDVAKKGLRSIRIDGTTASRLRDEQCRLFQENDDVMVAVLSITAAGIGVTLT 640
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A VVF EL +P + QAEDRAHR GQ +V + AK T D+ W + K L +
Sbjct: 641 AASVVVFAELHWNPGTLKQAEDRAHRLGQKDSVFVQYLIAKGTADDILWPLIQKKLDVLH 700
Query: 660 S 660
S
Sbjct: 701 S 701
>gi|340058903|emb|CCC53274.1| putative putative SNF2 DNA repair protein [Trypanosoma vivax Y486]
Length = 703
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 242/474 (51%), Gaps = 56/474 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LPK L + Q+ G+ L GGR L ADEMG+GKTLQAI + A +L+VCPA
Sbjct: 175 LPKKLFAALHQHQINGILQALSFGGRALFADEMGVGKTLQAIGTVVA-LRAFPVLIVCPA 233
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR W+EE+E+WL + D V ++ + P++V+ S+ M L + +
Sbjct: 234 ALRFMWSEEVEKWLMEVVELDDIHVITSSSDFLPAKENPKIVITSFHMASLLATHLQGRR 293
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVL-DVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W L+VDESH + + ++L ++ K +LLSGTPS + P+D+++QI+ L
Sbjct: 294 WKCLVVDESHMLHTTVDDCGDARYTSLLCELGKHAKHCLLLSGTPSPTTPFDLYNQIDTL 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG ++++FA YC ++ ++ + + R EL+ LL+ T MIRRLK L
Sbjct: 354 VPGLLGLSRFEFALRYCRIEFTPHFKPR------ECTRSTELHSLLRTTCMIRRLKTETL 407
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
+ LP K+R ++R+ EH+ C + K
Sbjct: 408 IDLPSKQRVLLRV---------------------------------AEHE---MCLDVAK 431
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
+Q+ + W+ + I G D ++ + NK+++FAHH+ +LD + + +S
Sbjct: 432 PPFQK------TYAENWMKKNDKIG---GVVDFLLS-KHNKLVLFAHHIALLDMLTKHVS 481
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
EKG+ +R+DGNT R + F S E ++AI+GITA GVG+ + A +F ELP
Sbjct: 482 EKGVSCIRVDGNTPTHSRAEILSMFN-SGETRVAIMGITACGVGIQLTGASCALFAELPP 540
Query: 612 SPSLMLQAEDRAHRRGQTSAVN-IYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
+ M QAEDR HR GQ V Y+ + D +H+ L+ S + V T+G
Sbjct: 541 DVTWMQQAEDRLHRPGQKKNVTFFYVIGSGSLFDSAHFNRLSSSFQAVRQVTDG 594
>gi|6102878|emb|CAB59251.1| hypothetical protein [Homo sapiens]
Length = 808
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 170/513 (33%), Positives = 279/513 (54%), Gaps = 53/513 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 270 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 329
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 330 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 385
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 386 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 440
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 441 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 493
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 494 AVMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTKDKTKQ---Q 547
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D+ + + AK+ E++ D+ + R K ++FAHH
Sbjct: 548 QKDALI------LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHH 588
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 589 KVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 648
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 649 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-- 706
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
L E + ++ EM++ TD +D
Sbjct: 707 ---------LAEAGLSETNFSEMTESTDYLYKD 730
>gi|156089377|ref|XP_001612095.1| helicase [Babesia bovis T2Bo]
gi|154799349|gb|EDO08527.1| helicase conserved C-terminal domain containing protein [Babesia
bovis]
Length = 879
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 169/557 (30%), Positives = 298/557 (53%), Gaps = 74/557 (13%)
Query: 158 LNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGG 217
+N+ EK S+ +G P +L + V ++G L + + PFQ EGV +G+RR G
Sbjct: 392 INLPEKTQDSL-SGHLCPYTSNNLDN--VHTLVGD---ELYNQLKPFQREGVNYGIRRNG 445
Query: 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHL 276
R LI DEMGLGKTLQA+AI+A + +L++CP+ LR W E+ RWLP + +D I +
Sbjct: 446 RVLIGDEMGLGKTLQALAISAFYRINWPLLIICPSSLRFQWREQCLRWLPHLVKSDDICM 505
Query: 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPE 334
+ + T ++V+ SY + R+ + + +I DESH+++ +KRT
Sbjct: 506 IMTGK---TEYTDETKIVITSYDLCVSNRR--LRHGFETIICDESHYLKNQNAKRT---- 556
Query: 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
+ + + + R++LLSGTPSL+ P +++ Q++ L P + F + YC+ K +
Sbjct: 557 --QFITPLLKEATRVILLSGTPSLNNPAELYEQLSCLIPSFCSSST--FVERYCE-KRLH 611
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS- 453
+ ++ +S EL++ L +TVMIRRLK+++L +LPPK R + + + +
Sbjct: 612 WFTKRM--TYSGSQHASELHMFLVKTVMIRRLKENVLNELPPKIRSKVPIYIAPDILRGL 669
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
+K +IN N P + +++ G AK+ G +++ +H
Sbjct: 670 SKTGPAIINSKP----NFNAPNTQE--------------VFRKTGEAKVKGVCDYV-LHL 710
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ + S K IIFAHH+ ++D +++ + + ++RIDG+T + R+S V
Sbjct: 711 IKS-------------SVKFIIFAHHMFMMDAIEQVLKAQHCCYMRIDGSTNAQQRESRV 757
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAV 632
FQ +++ ++A++ +TA GVGL+ +S+ VVF EL P M+QAEDRAHR G + +
Sbjct: 758 TEFQNNSKCRVALLSLTACGVGLNLTSSSTVVFAELHWVPGQMIQAEDRAHRMGTKHRII 817
Query: 633 NIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
NI+ A+ + +E+ W+ +++ V++ NG+ VS L M+ + SE
Sbjct: 818 NIHYLIAEGSIEETMWRVVSRKWETVTATLNGE-----------VSNLAMT----KESEK 862
Query: 693 LTLDQVASSDQFQELMK 709
++++A+ + EL+K
Sbjct: 863 AFINEMAAQYKITELLK 879
>gi|119632034|gb|EAX11629.1| zinc finger, RAN-binding domain containing 3, isoform CRA_a [Homo
sapiens]
Length = 1030
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 244/463 (52%), Gaps = 42/463 (9%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG 279
++ADEMGLGKT+QAI I + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MVADEMGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI-- 58
Query: 280 HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEE 335
V +V V+ Y +L K++I+ Q++ ++IVDESH+++ T
Sbjct: 59 QNKTDVRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRS--- 115
Query: 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +L + K +R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+
Sbjct: 116 -RILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--R 171
Query: 396 YQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
Y G+ Q D L EL+ LL +MIRRLK +L QLPPK RQ I L
Sbjct: 172 YFGKRPQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------P 223
Query: 455 KAAVGVINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
AA +N S E+ +TP G R+ +++ IAK ++++ +
Sbjct: 224 SAAAKELNTSFEEWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM-- 277
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++D S K ++FAHHL +L E + E ++RIDG+ +R V
Sbjct: 278 -MLQND----------SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLV 326
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+ FQ + ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VN
Sbjct: 327 NQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVN 386
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
I+ A T D W LN+ + S NG+ + +Q A EG
Sbjct: 387 IHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ--AEEG 427
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 843 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 902
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 903 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 936
>gi|380029845|ref|XP_003698575.1| PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A-like
protein 1-like [Apis florea]
Length = 713
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 190/669 (28%), Positives = 326/669 (48%), Gaps = 94/669 (14%)
Query: 96 YPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKN-SAGIEVEGIP 154
+P E L+ + L D+ +++ + L+DY ++ + N + +++ G+P
Sbjct: 124 FPPLIEILKTISSRLYDMKTKNWS----------FHLKDYEALMEKIINFKSDVQIIGLP 173
Query: 155 WVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLR 214
+ L V + + DT N LSD +D PK LL+ I+PFQ EG+ +G+
Sbjct: 174 KIVLQVHXNIXKN-DTSM-NAIENIDLSD--ID------PK-LLENIMPFQREGICYGIS 222
Query: 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADI 274
+GGRC+IAD+MGLGKT+QA+ IA F +L++ P+ +R WAE + +LP +P
Sbjct: 223 KGGRCMIADDMGLGKTIQALGIAHYFRKNWPLLIIVPSSMRYQWAEAICTFLP-SVPT-- 279
Query: 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPE 334
H ++ N + ++V+ +Y +L R + + + +I+DESH ++ SK
Sbjct: 280 HYIYQFANTK-DIIDDSKIVITTYDLLVRAVDTFQCKIFGFVILDESHVLKSSKTA---- 334
Query: 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
KA + + + +VLLSGTP LSRP +++ QIN++ P +G +Y YC
Sbjct: 335 RFKAAQCIVLQARHVVLLSGTPVLSRPIELYSQINLIMPNFMGYHEY--GTRYC-----A 387
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI--- 451
G + DF+ ++EL++LLK+T +IRRLK +L QLP K+R +LL I
Sbjct: 388 GEKTSFGWDFTGSSNMQELHLLLKRTCIIRRLKNDILNQLPIKKRXEGIILLNPDLIKIG 447
Query: 452 -----VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506
+S K ++N+ EK T + Y E +AK
Sbjct: 448 KEMLEISKKLKGKILNNLEKHNTLLQY--------------------YNESSVAKQKAIC 487
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
+++S + +N + K IIFAHH +L+ + + + I ++RIDG
Sbjct: 488 DYVS------------KLFINKQ--KCIIFAHHHNILNAICDVVESMNIKYIRIDGKMNS 533
Query: 567 RDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
R+ + FQ ++ A++ ITA G+ ++AQ V+F EL +P ++ QAEDR HR
Sbjct: 534 ERRKYEIDKFQNNDSYIAAVLSITAANAGITLTAAQLVIFAELFWNPGILCQAEDRVHRI 593
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKT 686
GQ V I AK T D+ W + K K + L E+ ++ L+ D T
Sbjct: 594 GQYKDVIIQYLVAKHTVDDYXWPLIQK-----------KMNVLNEVGLDQDFSLKDIDYT 642
Query: 687 DRG--SEDLTLDQVASSDQFQELM--KVPESSEASDFRAINTNDEITAKMNDKLLEESKT 742
+ S+ TL+ +++Q++ K+ +++E + I + T + +LL+ ++
Sbjct: 643 TQALNSKQKTLNFFINNEQYKHEADKKIVQNNENTTKNIILQSQSFTTEEFKELLDMNEE 702
Query: 743 DHSPTETDD 751
D + D+
Sbjct: 703 DFDFCDWDN 711
>gi|323455831|gb|EGB11699.1| hypothetical protein AURANDRAFT_1193, partial [Aureococcus
anophagefferens]
Length = 453
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 160/478 (33%), Positives = 262/478 (54%), Gaps = 46/478 (9%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EGV FGLR GR LIADEMG GK+ QAI + + + L+VCPA LR +WA
Sbjct: 5 LLKFQREGVAFGLRAKGRVLIADEMGCGKSAQAIRLCLHYFAEWPALIVCPASLRYTWAH 64
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR---LRKSMIEQDWALLI 317
ELE+WLP P++I + G + + + +++ ++ + K++ ++ + +++
Sbjct: 65 ELEKWLPTLAPSEISVAKGRSDKEAVCRKGIKFCIVTQSLFTESSGVAKAVEDRKFQVVV 124
Query: 318 VDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
VDESH + RT + + K +L + R+VLLSGTP+L+RP ++F Q++ + G
Sbjct: 125 VDESHGL----RTRDSQRTKLLLPIMKAAPRLVLLSGTPALARPVELFSQVHAIDGDAFG 180
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
F K YC ++G+ D S +EEL+ L + VM+RRLK+ +L QLP K
Sbjct: 181 TYN-KFTKRYC-----APFKGRFGWDVSGASNVEELHGKLAR-VMVRRLKRDVLSQLPEK 233
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC-----CRLGKI 492
RRQ++ + +A AA+ D+ + + + +DD+ A LG
Sbjct: 234 RRQLV-------AVDAAGAALKESRDAVRALGDASAAISAASNDDAWAARGEKNVALGD- 285
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
++Q+ G L+ + + ++GA K+++FAHH+ VLD ++ +
Sbjct: 286 AWQKSG---LAKAPAVAAYALELLANEGA----------KILLFAHHVAVLDALEADLVR 332
Query: 553 KGIG---FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
G RIDG+T P +RQ V SFQ +V+ A++ +TA GVGL ++A V+F EL
Sbjct: 333 GLKGSSAHFRIDGSTPPAERQRLVESFQNDPKVRCALLSVTAAGVGLTLTAASAVLFAEL 392
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFC---AKDTTDESHWQNLNKSLRCVSSATNG 664
+P +++QAEDRAHR GQ S+VN++ KD+ D + W+++ + + V +A +G
Sbjct: 393 HWTPGVLVQAEDRAHRIGQRSSVNVHYLVLKDEKDSVDMALWRSIARKVSVVGAALDG 450
>gi|119632037|gb|EAX11632.1| zinc finger, RAN-binding domain containing 3, isoform CRA_d [Homo
sapiens]
Length = 458
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/457 (34%), Positives = 242/457 (52%), Gaps = 40/457 (8%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG 279
++ADEMGLGKT+QAI I + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MVADEMGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI-- 58
Query: 280 HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEE 335
V +V V+ Y +L K++I+ Q++ ++IVDESH+++ T
Sbjct: 59 QNKTDVRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRS--- 115
Query: 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +L + K +R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+
Sbjct: 116 -RILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--R 171
Query: 396 YQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
Y G+ Q +G L EL+ LL +MIRRLK +L QLPPK RQ I L
Sbjct: 172 YFGKRPQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------P 223
Query: 455 KAAVGVINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
AA +N S E+ +TP G R+ +++ IAK ++++ +
Sbjct: 224 SAAAKELNTSFEEWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM-- 277
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++D S K ++FAHHL +L E + E ++RIDG+ +R V
Sbjct: 278 -MLQND----------SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLV 326
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+ FQ + ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VN
Sbjct: 327 NQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVN 386
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
I+ A T D W LN+ + S NG+ + +Q
Sbjct: 387 IHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ 423
>gi|344268549|ref|XP_003406120.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Loxodonta africana]
Length = 960
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 264/487 (54%), Gaps = 50/487 (10%)
Query: 180 HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC 239
HL+++ + + + L+ ++PFQ GV F + + GR L+AD+MGLGKT+QAI IAA
Sbjct: 420 HLTEDTPEADLSGVDAKLVSSLMPFQRAGVNFAIAKRGRLLLADDMGLGKTIQAICIAAF 479
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
+ +LVV P+ +R +W + RWLP P+ I++V ++ HLT V ++S+
Sbjct: 480 YRREWPLLVVVPSSVRFTWEQAFLRWLPSLRPSCINVVVTGKD---HLTA-GLVNIVSFD 535
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+L +L K + + + ++I+DESH ++ S RT+ +L VA KR++LLSGTP++S
Sbjct: 536 LLSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPILKVA---KRVILLSGTPAMS 590
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLK 418
RP +++ QI + P + + F YCD K G+ D+S L EL +LL+
Sbjct: 591 RPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRQPWGW------DYSGSSNLNELKLLLE 643
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT----NDKTP 474
+ +M+RRLK +L QLP K+R+++ + A G IN + A + T
Sbjct: 644 EAIMLRRLKSDVLSQLPAKQRKMVVV------------APGQINARARAALDAAAKEMTT 691
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
KD + A + + + AK+ E++ D+ + K +
Sbjct: 692 KDKTKRQQKEALL----LFFNKTAEAKIPSVIEYI------------LDL-LESGKEKFL 734
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+FAHH VLD + + K + +RIDG+T DR+S FQLS +A++ ITA +
Sbjct: 735 VFAHHKVVLDAITNELERKHVHHIRIDGSTSSADRESLCQQFQLSERHTVAVLSITAANM 794
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
GL FSSA VVF EL +P +++QAEDR HR GQT++V ++ A++T D+ W + +
Sbjct: 795 GLTFSSADLVVFAELFWNPGVLMQAEDRVHRVGQTNSVGVHYLVARNTADDYLWPMIQEK 854
Query: 655 LRCVSSA 661
++ + A
Sbjct: 855 IKVLGEA 861
>gi|7019996|dbj|BAA90955.1| unnamed protein product [Homo sapiens]
Length = 619
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 172/517 (33%), Positives = 275/517 (53%), Gaps = 61/517 (11%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 81 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 140
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 141 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLINIVSFDL 196
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 197 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 251
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 252 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 304
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN----DKTPK 475
VM+RRLK +L QLP K+R+I+ + A G IN + A + + T K
Sbjct: 305 AVMLRRLKSDVLSQLPAKQRKIVVI------------APGRINARTRAALDAAAKEMTTK 352
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
D + A + + AK+ E++ D+ + R K ++
Sbjct: 353 DKTKQQQKDALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLV 395
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHH VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +G
Sbjct: 396 FAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMG 455
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L FSSA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + +
Sbjct: 456 LTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKI 515
Query: 656 RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
+ L E + ++ EM++ TD +D
Sbjct: 516 KV-----------LAEAGLSETNFSEMTESTDYLYKD 541
>gi|84997577|ref|XP_953510.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65304506|emb|CAI76885.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 927
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 196/678 (28%), Positives = 316/678 (46%), Gaps = 126/678 (18%)
Query: 105 RLGQW-------LSDVMPSHYTQNNS---GGKACV-YKLRDYNPVLTCLKNSA--GIEVE 151
+ G W ++++M +NS G + CV YK DY+ VL L+++ VE
Sbjct: 241 QYGHWSCYVPNEITEIMNKMGLTSNSRMLGKERCVTYKASDYSTVLKGLRSAMRDKNSVE 300
Query: 152 GIPWVTLNVVEK-LSHSIDTGRWNPCRP--EHLSDEVVDEMIGKLPK----SLLDVILPF 204
IP L V + S D + R + DE E + L K L ++PF
Sbjct: 301 AIPNFVLRVFPSFIPFSRDFTLEDKTRQIMSGVQDEYTKENMDNLSKLIGEELWSQLMPF 360
Query: 205 QLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELER 264
Q +GV FGL + GR LI DEMGLGKTLQA+AIAA + +L++CP+ LR W ++
Sbjct: 361 QRQGVFFGLSKNGRILIGDEMGLGKTLQALAIAAFYQKDWPLLIICPSSLRFQWMDQCLT 420
Query: 265 WLPFCLPA-----------------------------DIHLVFGHRNN------------ 283
WLP + D + + N
Sbjct: 421 WLPHLVDEYQILMVMSSKPFTDSGKSTKREKTMFDFDDFDTYYAYSNAKTAKSKTKSKSI 480
Query: 284 PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343
L +VV+ISY ++ R+++ +++ +I DESH+++ + K V+ V
Sbjct: 481 SFDLLDMYKVVIISYDLMVRIKEL---KEFNAVICDESHYLK----NKSSQRSKRVVPVL 533
Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403
KR +LLSGTP+L+ P ++F QI + PG + + F YC +T + ++ +
Sbjct: 534 KSAKRAILLSGTPALNFPSELFEQIAAIIPGF--SSSHLFIDRYCKKRT-NWFTKRI--E 588
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVI-- 461
+ EL++ L TVMIRRLK +L QLPPK R I + + I + K +
Sbjct: 589 YVDSKHTNELHLFLISTVMIRRLKNDVLTQLPPKIRSKIPIEIPEKLIKTTKVMLEKFPS 648
Query: 462 NDSEKDATNDKTPKDSDEHDDSGACCRLG----KI-SYQELGIAKLSGF----------- 505
+ DK +S E +SG ++G +I +Y + + LS F
Sbjct: 649 RKGGSGSGGDKITLES-EFGNSGPSVKVGLSKDRIENYYNVVMEHLSNFSDGDEIVEKDS 707
Query: 506 ---REWLSIHPVIAESDGAADI--------DVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
R LS+ + + G + ++ +NK IIFAHH+ ++D +++ + K
Sbjct: 708 DVKRAHLSLMSKLFQLTGESKTKGVCKYIEEILENNNKFIIFAHHMFMMDAIEDTLKSKK 767
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQ---LSNE-------------------VKIAIIGITAG 592
+G++RIDG+T DR V+ FQ SNE V++A++ +T+
Sbjct: 768 VGYIRIDGSTKINDRARLVNLFQNNSASNESKSDAKANKVEGDDSPNNGVRVALLSLTSC 827
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNL 651
GVGL+ +S+ V+F EL P ++LQAEDR HR G + + +NI A+++ +E W+ +
Sbjct: 828 GVGLNLTSSSTVIFAELYWVPGVLLQAEDRVHRIGTKFNKININYLIAQNSVEEVMWKVI 887
Query: 652 NKSLRCVSSATNGKYDAL 669
NK + V+S +G+ L
Sbjct: 888 NKKYKTVTSTLDGETGTL 905
>gi|403266927|ref|XP_003925609.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Saimiri boliviensis boliviensis]
Length = 957
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 178/527 (33%), Positives = 281/527 (53%), Gaps = 56/527 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 420 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 479
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT V ++S+ +
Sbjct: 480 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLNPDCINVVVTGKD---RLTAG-LVNIVSFDL 535
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP+ SR
Sbjct: 536 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPATSR 590
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K + G+ D+S L EL +LL++
Sbjct: 591 PAELYTQIIAVRPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEE 643
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+I+ + R + A +N + K+ T DKT + E
Sbjct: 644 AVMLRRLKSDVLSQLPAKQRKIVVVAPGRI----SATARAALNAAAKEMTKDKTKQQQKE 699
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + K ++FAHH
Sbjct: 700 -----ALI----LFFNRTAEAKIPSVIEYI------------MDL-LESGKEKFLVFAHH 737
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD V + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 738 KVVLDAVTKALERKHVLHIRIDGSTSSAEREDLCQQFQLSPRHAVAVLSITAANMGLTFS 797
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 798 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYVVAKGTADDYLWPMIQEKIKV-- 855
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
L E + ++ EM++ TD +D Q+ D FQ+
Sbjct: 856 ---------LGEAGLSETNFSEMTEATDYLYKDPKQQQI--YDLFQK 891
>gi|241855293|ref|XP_002416013.1| conserved hypothetical protein [Ixodes scapularis]
gi|215510227|gb|EEC19680.1| conserved hypothetical protein [Ixodes scapularis]
Length = 675
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 242/467 (51%), Gaps = 45/467 (9%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L +LPFQ EGV +RR GR LIAD+MGLGKT+Q+IA+A F +LVV P+ +R
Sbjct: 207 LEQALLPFQKEGVCTAIRRNGRLLIADDMGLGKTIQSIAVACYFREEWPVLVVAPSSVRF 266
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W E W+P + ++ + + + +VV+ SY +L R + I + ++
Sbjct: 267 TWKEAFLHWMPSLRDDQVTVLVTGSDK---VDKDHQVVITSYDLLSR-KVDDIRGKFQVV 322
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K KA V AK KR++LL+GTP+LSRP +++ QI + P
Sbjct: 323 ILDESHFIKSHK----AARTKACQKVIAKAKRVLLLTGTPALSRPIELYTQICAVRPKCF 378
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ ++ YC+ K Q G+ D+S ++EL +LL++++MIRRLK +L QLP
Sbjct: 379 PSIQ-EYGIRYCNGKVTQWGW------DYSGSSNMQELQLLLEKSIMIRRLKSDVLSQLP 431
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY- 494
K+RQ++ L + ++ K V+ K+ N+ G R ++Y
Sbjct: 432 AKQRQVVVL-----DPLTIKTTDKVLQHMAKEMQNESI---------QGMQRRGVLLTYF 477
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
+E G+ K ++L D+ K + FAHH V+D V E + +K
Sbjct: 478 RETGLHKCKAICKYLE--------------DLLESDQKFLCFAHHQMVIDAVCELLDKKS 523
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
+RIDG T P R+ FQ ++ K+A++ ITA G+ SSA VVF EL +P
Sbjct: 524 CSHIRIDGKTSPELRKMLCDKFQYNDMCKVAVLSITAANAGITLSSASLVVFAELFWNPG 583
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
++ QAEDR HR GQ + V + AK T D+ W + L +S A
Sbjct: 584 ILTQAEDRVHRIGQQNCVMVQYLVAKGTADDYIWPLVRNKLDTLSKA 630
>gi|328697302|ref|XP_001945056.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Acyrthosiphon pisum]
Length = 656
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/540 (29%), Positives = 271/540 (50%), Gaps = 70/540 (12%)
Query: 130 YKLRDYNPVLTCLKN-SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ ++D++ ++ +K +++E +P L + K I+T W+ + D+
Sbjct: 120 FLIKDHDQLMISIKPLEPDVKIEKLPHFILKLF-KTKEDIET-HWSKVDISSIGDD---- 173
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+LD + PFQ GV+FG+ + GRCLIAD+MGLGKTLQAI I + +L+
Sbjct: 174 --------MLDNLYPFQKLGVQFGVSKKGRCLIADDMGLGKTLQAIGIVKYYSDNFPLLI 225
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
VCP+ +R +W EE+ +P I+++ + P VV+ SY ++ + + +
Sbjct: 226 VCPSSMRYTWEEEIRLRMPNVPITGIYVLSKSNEQFID----PAVVITSYDLMSKKKDML 281
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
I+ + ++I DESH ++ K + L +A + K+ +LLSGTP+LSRP +++ QI
Sbjct: 282 IKYKFGIIIFDESHSLKSEKSA----RTRVALSLAMQSKQCILLSGTPALSRPIELYSQI 337
Query: 369 ------NMLWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
N + P ++ YC+ + T+ G+ DFS ++EL V+L+
Sbjct: 338 KAITRNNFMTP-------VEYGVRYCNGRETIYGW------DFSGATNMKELKVILETQF 384
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
MIRRLK +L QLP K R ++ +LK I KA ++D E N K ++ +
Sbjct: 385 MIRRLKSEVLKQLPQKIRNVV--VLKPENI---KARSQNMDDLETMMNN----KSLNKME 435
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
GA + + G AKL +++ +++ K I+FAHH K
Sbjct: 436 VRGALLKY----FNHTGEAKLPAICDYI--------------LNLLKDGKKFIVFAHHQK 477
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
V++G+ + + ++RIDG T +R+ FQ + ++A++ I A G+ ++A
Sbjct: 478 VINGICDVLENNETYYIRIDGKTSSEERKCVCDQFQSEDMYRVAVLSICAANSGITLTAA 537
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+ V+F EL +P ++ QAEDRAHR GQ V I AK T D+ W + L ++ A
Sbjct: 538 KLVIFAELYWNPGILTQAEDRAHRIGQAETVTIQYLLAKGTADDHIWPLIQSKLSVLNKA 597
>gi|149710126|ref|XP_001490055.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 [Equus
caballus]
Length = 948
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 180/563 (31%), Positives = 299/563 (53%), Gaps = 59/563 (10%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++ G PK L+ +LPFQ GV F + +GGR L+AD+MGLGKT+QAI +AA + +L
Sbjct: 422 DLSGVDPK-LVSNLLPFQRAGVNFAVAKGGRLLLADDMGLGKTIQAICVAAFYRKEWPLL 480
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P+ +R +W + +WLP P I++V ++ HLT V ++S+ +L +L K
Sbjct: 481 VVVPSSVRFTWEQAFLQWLPSLSPDHINVVVTGKD---HLTAG-LVNIVSFDLLSKLEKQ 536
Query: 308 M--IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ ++ + ++I+DESH ++ SK T+ +L VA R++LLSGTP++SRP +++
Sbjct: 537 LKQLKSPFKVVIIDESHFLKNSK-TARCRAATPLLKVA---NRVILLSGTPAMSRPAELY 592
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
QI + P + + F YCD K + G+ D+S L EL +LL++ VM+R
Sbjct: 593 TQILAVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEEAVMLR 645
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK +L QLP K+R+++ + R ++AKA + +++ T +KT + E
Sbjct: 646 RLKSDVLSQLPAKQRKMVVVAPGR---INAKARASLDAAAKEMTTKNKTKQQQKE----- 697
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
A + + AK+ E++ D+ + R K ++FAHH VLD
Sbjct: 698 ALI----LFFNRTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAHHKVVLD 740
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ + + K + +RIDG T DR++ FQLS +A++ ITA +GL FSSA V
Sbjct: 741 AITKELERKHVQHIRIDGATSSADREALCQQFQLSERHAVAVLSITAANMGLTFSSADLV 800
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL +P +++QAEDR HR GQ+ +V I+ A+ T D+ W + + ++ +S
Sbjct: 801 VFAELFWNPGVLIQAEDRVHRIGQSRSVGIHYLVARGTADDYLWPLIQEKIKILS----- 855
Query: 665 KYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINT 724
E + + EM++ TD +D ++ D FQ+ + + S+ A+ +
Sbjct: 856 ------EAGLSETKFSEMTEATDYLYKDPKQQKI--YDLFQKSFE-EDGSDMELLEAVES 906
Query: 725 NDEITAKMN-DKLLEESKTDHSP 746
D + + + L+ES SP
Sbjct: 907 FDPGSGSQDTEDTLDESTLTGSP 929
>gi|296205540|ref|XP_002749811.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Callithrix jacchus]
Length = 957
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 297/564 (52%), Gaps = 62/564 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L ++N ++T + ++++ +P TL + + + NP + +V +
Sbjct: 377 FLLEEHNKLITKARCLPQVQLDPLP-TTLTLA--FASQLKKTSLNP------TPDVPEAD 427
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 428 LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVV 487
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +W + RWLP P I++V ++ LT V ++S+ +L +L K +
Sbjct: 488 VPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTA-GLVNIVSFDLLSKLEKQL- 542
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH ++ S RT+ VL +A KR++LLSGTP+ SRP +++ QI
Sbjct: 543 KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKIA---KRVILLSGTPATSRPAELYTQII 598
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ P + + F YCD K + G+ D+S L EL +LL++ VM+RRLK
Sbjct: 599 AVKPTFFPQF-HAFGLRYCDAKRMPWGW------DYSGSSNLGELKLLLEEAVMLRRLKS 651
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R+I+ + R ++A A + +++ T DKT + E A
Sbjct: 652 DVLSQLPAKQRKIVVVAPGR---INASARAALDAAAKEMTTKDKTKQQQKE-----ALI- 702
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ + AK+ E++ D+ + K ++FAHH VLD V +
Sbjct: 703 ---LFFNRTAEAKIPSVIEYI------------MDL-LESGKEKFLVFAHHKVVLDAVMK 746
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ K + +RIDG+T +R+ FQLS +A++ ITA +GL FSSA VVF E
Sbjct: 747 ELERKKVPHIRIDGSTSSAEREDLCQQFQLSQRHAVAVLSITAANMGLTFSSADLVVFAE 806
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
L +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 807 LFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV----------- 855
Query: 669 LQEIAVEGVSYLEMSDKTDRGSED 692
L E + ++ EM++ TD +D
Sbjct: 856 LGEAGLSETNFSEMTEATDYLYKD 879
>gi|348552612|ref|XP_003462121.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Cavia porcellus]
Length = 916
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 264/482 (54%), Gaps = 43/482 (8%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L +V + + + L+ ++PFQ GV F + + GR L+AD+MGLGKT+QAI IAA +
Sbjct: 381 LQADVPEADLSGVDDKLVSNLMPFQRVGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFY 440
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P ++++V + + LT V ++S+ +
Sbjct: 441 RKEWPLLVVTPSSVRFTWEQAFLRWLPSLRPENVNVVVNGKGS---LTA-GLVNIVSFDL 496
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L + + + ++I+DESH ++ SK +A + + KR +LLSGTP++SR
Sbjct: 497 LSKLERQL-KTSVKVVIIDESHFLKNSKTA----RCRAAMPILKGAKRAILLSGTPAMSR 551
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQ 419
P +++ QI + P + + F YCD K +Q G+ D+S L EL +LL++
Sbjct: 552 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRLQWGW------DYSGSSNLGELKLLLEE 604
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+++ + R +SAKA ++ + K+ T DKT + E
Sbjct: 605 AVMLRRLKSDVLSQLPAKQRKMVVVAPGR---ISAKARAS-LDAAAKEMTKDKTKQQQKE 660
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 661 -----ALI----LFFNRTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAHH 698
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FS
Sbjct: 699 KMVLDAITKELERKHVPHIRIDGSTPSAEREDLCQQFQLSERHAVAVLSITAANMGLTFS 758
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
SA VVF EL +P +++QAEDR HR GQTS+V I+ A+ T D+ W + + ++ +
Sbjct: 759 SADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVARGTADDYLWPLIQEKIKVLG 818
Query: 660 SA 661
A
Sbjct: 819 EA 820
>gi|395527741|ref|XP_003765998.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Sarcophilus harrisii]
Length = 911
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 156/483 (32%), Positives = 261/483 (54%), Gaps = 53/483 (10%)
Query: 211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCL 270
F + GGR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + WLP
Sbjct: 411 FAISHGGRLLLADDMGLGKTIQAICIAAYYRKEWPLLVVTPSSVRFTWEQAFHHWLPSLS 470
Query: 271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330
P ++V +++ LT + ++S+ +L RL+K + + + ++I+DESH ++ K
Sbjct: 471 PDSTNVVETGKDS---LTA-GLINIVSFDLLSRLKKQL-KTSFQVIIIDESHFLKNVKTA 525
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+A L + KR++LLSGTP++SRP +++ QI + P + +DF YCD
Sbjct: 526 ----RCQAALPLLKAAKRVILLSGTPAMSRPAELYTQIVAVKPHFFPQF-HDFGLRYCDA 580
Query: 391 KTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
K + G+ D+S L EL +LL++TVM+RRLK +L QLP K+R+++ + +
Sbjct: 581 KKLPWGW------DYSGSSNLGELRILLEETVMLRRLKSSVLSQLPAKQRKMVVVAPGQM 634
Query: 450 EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
+ S V+ + K+ T +K K + A + + AK+ E++
Sbjct: 635 DAKSR----AVLAAAAKEMTTEKKSKRQQKE----ALI----LFFNRTAEAKVQPATEYI 682
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
D+ + R K+++FAHH VLD + + +K I ++RIDG T DR
Sbjct: 683 ------------MDLLESGR-EKLLVFAHHKLVLDAICCNLEKKHINYIRIDGATSSADR 729
Query: 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
Q+ FQLS + +A++ ITA +GL FS+A VVF EL +P +++QAEDR HR GQ+
Sbjct: 730 QALCQLFQLSEKYPVAVLSITAANMGLTFSAADLVVFAELFWNPGILIQAEDRVHRIGQS 789
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
++V+I+ AK T D+ W + + ++ + A + ++ +M++ TD
Sbjct: 790 NSVSIHYLVAKGTADDYLWPLIQEKIKVLGQA-----------GLSDTNFSDMTEATDYF 838
Query: 690 SED 692
+D
Sbjct: 839 HKD 841
>gi|313224277|emb|CBY20066.1| unnamed protein product [Oikopleura dioica]
Length = 817
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 254/482 (52%), Gaps = 49/482 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P+ LL + PFQ EGV +RRGG+ ++ADEMGLGKT+QA+A+AA + +L+V P+
Sbjct: 156 VPEKLLTALYPFQREGVDQIIRRGGKAILADEMGLGKTIQALALAAHYRKDWPLLIVAPS 215
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML--------HRL 304
++ +W EL W+ + D LV + + +VV+ SY M H
Sbjct: 216 SVKFNWLIELSNWIGEIVSKDSILVLYTGKDVAKIRNTLKVVITSYEMTTKIVNSGKHMT 275
Query: 305 RKSMIEQD------WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
S+ ++ + ++I+DESH++ +T+ + K+ + R++ LSGTP+L
Sbjct: 276 DTSIFSEENDRKSRFRMVILDESHYI----KTATAQRAKSTKLICNGAARVLCLSGTPAL 331
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
++P ++ QI ++ L ++ F + YC Y+ + ++S L+ELN++L
Sbjct: 332 AKPIELHSQIEVVSKDLFSN-RHSFGQRYC-----AAYKSKYGWNYSGSDNLQELNLILS 385
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA---------KAAVGVINDSEKDAT 469
+T+MIRRLK +L LPPK R+II + + S ++ K + + K+
Sbjct: 386 KTIMIRRLKSQVLKDLPPKIRKIIYMKVTDSPMMKKCNKIFQNIQKLPAQMTKNDFKEME 445
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
+K +E D S + Y G AK+ E+L I + ES+
Sbjct: 446 LEKLSDKFEEADSSPLT--IWNKWYCATGDAKIKAVSEYL-IEKLENESE---------- 492
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIG-FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K+I+FAHH V+D +++ IS K G ++I G+T DR + V FQ + +K A++
Sbjct: 493 --KIIVFAHHRAVIDSLEQNISPKIKGNLIKITGSTRSDDRTTYVEQFQNNENIKCALLS 550
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
ITA +G+ + A VVF EL +P +M+QAEDRAHR G+ + VNI AK+T DE W
Sbjct: 551 ITAVNMGVTLTKASTVVFAELHYTPGVMVQAEDRAHRIGRETDVNIEYLIAKNTADEWIW 610
Query: 649 QN 650
++
Sbjct: 611 RD 612
>gi|403361151|gb|EJY80271.1| SNF2 family N-terminal domain containing protein [Oxytricha
trifallax]
Length = 1461
Score = 239 bits (609), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 167/576 (28%), Positives = 293/576 (50%), Gaps = 66/576 (11%)
Query: 122 NSGGKACVYKLRDYNPVLTCLKN---SAGIEVEGIPWVTLNVVE-KLSHSIDTGRWNPCR 177
NS K + L Y V + + ++++ IP V +++E ++ S ++ +
Sbjct: 290 NSPNKEWIVSLNKYKEVAIEISQYCRAKIVDLDPIPQVAFDIMEFRIPFSDESKQNTLID 349
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
++ D+ + LP SL + FQ GV+FG+ GR L+ DEMG+GKT+QAI+IA
Sbjct: 350 YDYSLDQYCKPSLSNLPTSLFQSLYNFQKVGVQFGIDHHGRILLGDEMGVGKTIQAISIA 409
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVV 295
+ +L++ P+ L+ SW +EL +W+ P I VF P V +
Sbjct: 410 YLYQKDWPVLIITPSSLKFSWRDELLQWIEHLRPDQIQ-VFQKSTEDFD----PNCCVYL 464
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+SY + +L + + ++ + ++I DE+H++ ++ + + K ++ + K KR++LLSGT
Sbjct: 465 MSYVIATKLSQFIEKKKFKIMIADEAHYL----KSRDSQRSKYLVPLLMKSKRVLLLSGT 520
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P L+RP ++++ + +L P + K +F + YC+ + + Y G D++ + EL++
Sbjct: 521 PILARPNELYNLVRVLRPDIFFSFK-EFGQRYCNPR--ESYFG---IDWTGSSNMRELHL 574
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQ------------IIRLLLK--------RSEIVSAK 455
+L++++MIRRLK +L +LP KRRQ I +LK + ++V
Sbjct: 575 MLEKSLMIRRLKSEVLHELPAKRRQRITVQCDQHCLKKINYMLKNVKKWDDRQGKVVGQN 634
Query: 456 A----AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI--SYQELGIAKLSGFREWL 509
VG D ++ N E DD + G + +Y G AK G E+L
Sbjct: 635 GDLIQTVGEEFDKLQENANILNDPALTELDD-----KYGYLLNAYALTGSAKAKGVCEFL 689
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
+ E+ +K I+FAHHL+VLD +++ + +K + ++RIDG R
Sbjct: 690 D---TLIEN-----------GSKFIVFAHHLEVLDQIEDSVVKKKVDYIRIDGQIDTTKR 735
Query: 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
AV FQ + + I I+ +TA G+ ++A VVF E+ +P +M+QAEDRAHR GQ+
Sbjct: 736 YEAVRKFQTNEKCLIGILSLTASSQGITLTAASTVVFAEMNWTPGIMVQAEDRAHRIGQS 795
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
S+VN+Y ++T D + L ++ +GK
Sbjct: 796 SSVNVYYLYGENTVDAMIYPRLKLKSEVFANVLDGK 831
>gi|26334961|dbj|BAC31181.1| unnamed protein product [Mus musculus]
Length = 482
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 241/440 (54%), Gaps = 44/440 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F LRR GRC++ADEMGLGKT+QAIAIA + +L+V P+
Sbjct: 29 LPDKLRTKLLPFQKDGIVFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPS 88
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIE 310
LR W EELE+W+P P +I++V N + R P RV V+ Y +L +++++
Sbjct: 89 SLRYPWIEELEKWIPELEPEEINVVM----NKTDIGRIPGSRVTVLGYGLLTTDAETLLD 144
Query: 311 ----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
Q++ ++IVDESH+++ RT+ K +L + K +R +LL+GTP+L RP ++F
Sbjct: 145 ALNTQNFRVVIVDESHYMKS--RTA--ARSKILLPMVQKARRAILLTGTPALGRPEELFM 200
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRR 425
QI L+P G ++AK YC+ Y G+ Q +G L EL+ LL +MIRR
Sbjct: 201 QIEALFPQKFG-TWIEYAKRYCNAHV--RYFGKRRQWDCRGASNLSELHQLLND-IMIRR 256
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RQ I L AAV +N S E+ + P G
Sbjct: 257 LKSEVLSQLPPKVRQRIPFDL-------PPAAVKELNASFEEWQKLMRAPNSGAMETVMG 309
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 310 LITRM----FKQTAIAKAGAVKDYIKM---LLQND----------SLKFLVFAHHLSMLQ 352
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +V
Sbjct: 353 ACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHV 412
Query: 605 VFLELPQSPSLMLQAEDRAH 624
VF EL P + QAEDRA
Sbjct: 413 VFAELYWDPGHIKQAEDRAQ 432
>gi|427785507|gb|JAA58205.1| Putative chromatin remodeling protein harp/smarcal1 dead-box
superfamily [Rhipicephalus pulchellus]
Length = 678
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 160/454 (35%), Positives = 236/454 (51%), Gaps = 45/454 (9%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L +LPFQ +GVR + R GR LIAD+MGLGKT+Q IAIAA + +LVV P+ +R
Sbjct: 201 LEQALLPFQKDGVRTAVLRKGRILIADDMGLGKTIQGIAIAAYYREEWPVLVVTPSSVRF 260
Query: 257 SWAEELERWLPFCLPADIH-LVFGHRN-NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
+W E RW+P + LV G + +P H +V++ SY +L + + + + +
Sbjct: 261 TWKEAFLRWMPSLNQDQVTVLVTGSDSVSPCH-----QVIITSYDLLTKKTEDLCGK-FN 314
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++++DESH ++ SK KA +K KR+VLL+GTP+LSRP +++ QI + P
Sbjct: 315 VVLLDESHFIKNSKTA----RTKACQKALSKAKRVVLLTGTPALSRPIELYTQICAVQPK 370
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
+ ++F YC+ G + Q DFS + EL + L++TVMIRRLK +L QL
Sbjct: 371 CFS-SMHEFGIRYCN-----GKKNQWGWDFSGSSNMHELQLFLEKTVMIRRLKSDVLSQL 424
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
P K+RQ++ LL S + K V+ ++ N K+
Sbjct: 425 PAKQRQVV--LLDPSHV---KTTDKVLQHMAREMHN-------------------TKLKV 460
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
E L+ FRE IH V A D+ K + FAHH VLD + + ++ K
Sbjct: 461 MEKRGVLLTYFRE-TGIHKVKAVCKYIEDLVEG--DQKFLCFAHHQVVLDSICDLLNRKN 517
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
+RIDG T R+ FQ ++ K+A++ ITA G+ SSA V+F EL +P
Sbjct: 518 CSHIRIDGKTSSELRKQLCDKFQYNDMCKVAVLSITAANAGITLSSASLVIFAELFWNPG 577
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
++ QAEDR HR GQ + V I AK T D+ W
Sbjct: 578 ILTQAEDRVHRIGQQNCVVIQYLVAKGTADDYIW 611
>gi|343471877|emb|CCD15802.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 953
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 179/562 (31%), Positives = 271/562 (48%), Gaps = 66/562 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P LL + Q+ G+ L GGR + ADEMG+GKTLQAI A + A L+VCPA
Sbjct: 175 VPPRLLAALHRHQVYGICRALSLGGRVMFADEMGVGKTLQAIGTLAA-VKAYPALIVCPA 233
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR W EELE+WL L D V + + L P+VVV S+ M L + +
Sbjct: 234 ALRHMWVEELEKWLMDTLSMDDIHVITSSSGFLSLKDDPKVVVTSFHMASALATHIRSRQ 293
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVL-DVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W +IVDESH + + S ++L +V + K +LL+GTPSLS P+D+F+Q++ML
Sbjct: 294 WETVIVDESHILHTTVDESGDARYTSLLCEVGKRSKYCILLTGTPSLSTPFDLFNQVDML 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG ++++FA YC + ++ + R EL+ LLK T MIRR+K L
Sbjct: 354 SPGLLGSSRFEFALRYCRSEFSPYFK------VLECTRCVELHSLLKATCMIRRMKSETL 407
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
LP K+R I+RL A P+ S + +
Sbjct: 408 ADLPTKQRIILRL----------------------PAAKTFFPQRSTS---------IFQ 436
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
+Y E W++ I E+ D+ ++ + K+++FAHH+ +L+ + I+
Sbjct: 437 KAYAE----------NWIANREKILET---VDLLLS-KYAKIVLFAHHISLLETLTIHIN 482
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
+K + ++RIDG+T RQ + SF + ++ +AIIGITA VG+ + A +F ELP
Sbjct: 483 KKKLTWIRIDGSTPMNSRQELLSSFN-NGDICVAIIGITACAVGIQLTGASCALFTELPP 541
Query: 612 SPSLMLQAEDRAHRRGQTSAVNI-YIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+ + QAEDR HR GQT V + YI D +H+ L+ S + + T+G+ +L
Sbjct: 542 DVTWLQQAEDRLHRPGQTRCVVLYYIVSTGSFFDGTHFLRLSNSFQAIRRVTDGEDSSL- 600
Query: 671 EIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITA 730
IA S + + D G + + + F + P FR + I
Sbjct: 601 -IASYETSVISVCDTLLEG--ECSDPGAYHTTSFSNMTGFPAPLR---FRISHNTGRIHV 654
Query: 731 KMNDKLLEESKTDHSPTETDDH 752
DK L T SP E +
Sbjct: 655 ACEDKFL----TSMSPKEAQQY 672
>gi|167525194|ref|XP_001746932.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774712|gb|EDQ88339.1| predicted protein [Monosiga brevicollis MX1]
Length = 712
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 163/520 (31%), Positives = 264/520 (50%), Gaps = 43/520 (8%)
Query: 148 IEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLE 207
+ ++ IP +VV +L+ D R + E++ +LP+ L+ ++P+Q
Sbjct: 73 LMIKAIP----DVVLRLTEHPDWQRQATQHQSFSATELLAITGTRLPRRLVHKMMPYQRA 128
Query: 208 GVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLP 267
GV + RGGR L +DEMGLGKT+ ++A AA + + +LVVCP+ L+L+W E+ +WL
Sbjct: 129 GVACAIERGGRVLWSDEMGLGKTVSSLATAAYYQAEWPLLVVCPSSLKLTWHHEICKWLQ 188
Query: 268 FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327
A V + +P++ V ++SY + L + + D+ ++I DESH+++
Sbjct: 189 IDESAIG--VVSSKKSPMNKL----VTILSYDLARNLHEHLTSADFQVIIADESHYLKNG 242
Query: 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
K KA++ + K KR++LLSGTP+LSRP +++ Q++ L P L +++ F Y
Sbjct: 243 KAA----RTKALMPLLHKAKRVLLLSGTPALSRPIELYQQLHALAPRLF-RSEVAFGIRY 297
Query: 388 CDVK-TVQGYQ--GQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
C+ + T G++ G QD EL+ +L++ VMIRR+K +L LPPK RQ + +
Sbjct: 298 CNSQLTAFGWRHDGSCNQD--------ELHCVLERLVMIRRVKAAVLTDLPPKTRQEVYV 349
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
+ + + KA + E+ + S A L +Y G AK+ G
Sbjct: 350 QADPAPLRALKAIMQKRKALERQLA---SLHGSQRAQGERALQALTTEAYGLTGEAKIKG 406
Query: 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564
+L D+ K++IFAHH +LD + F+ ++ + +RIDG+T
Sbjct: 407 CLRYLE--------------DLMNHDGKLLIFAHHKTLLDELATFLCQRQLRHIRIDGST 452
Query: 565 LPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624
RQ +SFQ ++A++ IT G GL +A VVF EL +P + QAEDRAH
Sbjct: 453 PTHLRQQLCNSFQDDVLCRVAVLSITTAGTGLTLHAANTVVFAELYWNPGHLYQAEDRAH 512
Query: 625 RRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
R GQ VN+ T D+ W L + + V A G
Sbjct: 513 RVGQRHNVNVRYLLCPGTLDDVMWSQLQRKAKIVQRAMAG 552
>gi|308811198|ref|XP_003082907.1| SNF2 domain-containing protein / helicase domain-containing protein
(ISS) [Ostreococcus tauri]
gi|116054785|emb|CAL56862.1| SNF2 domain-containing protein / helicase domain-containing protein
(ISS) [Ostreococcus tauri]
Length = 596
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/475 (32%), Positives = 251/475 (52%), Gaps = 36/475 (7%)
Query: 191 GKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250
++P+ + + FQ EGV + LRRGGR LI DEMGLGKT+QA A+ AC+ L++
Sbjct: 75 ARVPREMDAKMFDFQREGVMYALRRGGRALIGDEMGLGKTVQACALLACYKDECPALILV 134
Query: 251 PAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
P LR +W L+ WL DI +V G N L ++ Y++ +L+ + E
Sbjct: 135 PTSLREAWRNALQSWLD-ADDGDIAVV-GAANEAKKLDEGRMYNIVPYSLCVKLKDRLRE 192
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ + +++ DESH ++ +R + V ++ A R++ L+GTP+LSRP ++F Q+
Sbjct: 193 RRYKVIVADESHFLK-DRRAQRTQAVMPLMKDGA-ASRVICLTGTPALSRPIELFSQLEA 250
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L P + + +D+ YC QG G F ++ R +EL+V++ + M+RRLK+ +
Sbjct: 251 LVPRVFFRL-HDYGTRYC-----QG--GAPFGMYTGCSRADELHVMISKLCMVRRLKRDV 302
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
L LPPK+R L +++S + + ++ D + + +E RL
Sbjct: 303 LKSLPPKQRTQQFLTVEKSCLGDVRRI-----KTQLDKLREAGGSEFEEK-------RLL 350
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
+ AK++ ++L +I DG+A S K I FAHH +LD V F+
Sbjct: 351 NELFLASAKAKVNAVCDYL--ETLI---DGSA-------SEKFIFFAHHGVMLDAVSAFL 398
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+K +RIDG+T R V+ FQ + +IA++ I A G+GL ++A V+F E+
Sbjct: 399 EKKKCKHIRIDGSTPSAARGDLVNKFQRDDSTRIAVLSIKAAGMGLTLTAASTVIFGEMV 458
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
+P ++QAEDRAHR GQ S+V + A+DT DE WQ + + L + + NG+
Sbjct: 459 WTPGDLIQAEDRAHRIGQASSVLVQYLHARDTIDEIIWQTIRRKLDTLGTVLNGQ 513
>gi|407037931|gb|EKE38854.1| helicase domain containing protein [Entamoeba nuttalli P19]
Length = 858
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 157/476 (32%), Positives = 245/476 (51%), Gaps = 50/476 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P L + + +Q GV+FGLR+ GR LI DEMGLGKTLQA+A+ + + ILV+ P
Sbjct: 337 IPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTLQALALVSAYPENEHILVITPN 396
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
L W ++++RWL P DI V+ ++ V TRF VVISY + + +M
Sbjct: 397 SLVYQWCDQIQRWLDVD-PNDI-AVYKPKDIEVPNTRF---VVISYNSMANTQGNMFSHA 451
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ ++I DE H ++ T + K LDV K K+++ LSGTP+LSRP ++++ +++L
Sbjct: 452 FPMVICDECHFIK----TDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELYNILSVLI 507
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ K F K YC+ G ++++ +EL LL TVMIRRLK +L
Sbjct: 508 KDI--GTKESFGKRYCE------ETGTRYKNYLSMKNEKELKYLL-TTVMIRRLKNDVLK 558
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+LPPK R+ K +G ++ +E +K KD D + G + ++
Sbjct: 559 ELPPKIRE--------------KVYLGELDKNEYRECLEKMKKDLD--NARGVKQKRQQV 602
Query: 493 S--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
++ G+AK+ + +L D D + K+++FAHH VLDG+ +
Sbjct: 603 FELHRSTGLAKIPLIQAYL---------DDVLDSGIK----KVVVFAHHRDVLDGIVYNL 649
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
K + F+RIDG T +++ V F+ + ++A++ I A GL+F A +F E+
Sbjct: 650 QRKKVQFIRIDGETKSENKKELVDIFRDDDNCRVAVLSILAANCGLEFQKAALCIFAEMT 709
Query: 611 QSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
P MLQAEDR HR GQ + +V I A + DE W + K L V +GK
Sbjct: 710 FVPGEMLQAEDRVHRIGQQADSVKIEYLIANKSYDEQIWNTIEKKLDVVGKVLDGK 765
>gi|395823737|ref|XP_003785137.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
[Otolemur garnettii]
Length = 920
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 264/484 (54%), Gaps = 42/484 (8%)
Query: 180 HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC 239
H + +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA
Sbjct: 388 HPTADVPEADLSQVEDKLVSNLMPFQRTGVNFAIAKGGRLLLADDMGLGKTIQAICIAAF 447
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
+ +LVV P+ +R +W + +WLP P D+++V ++ V ++S+
Sbjct: 448 YRKEWPLLVVVPSSVRFTWEQAFLQWLPSLSPRDVNVVVTGKD----CLNSGLVNIVSFD 503
Query: 300 MLHRLRKSM-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
+L RL K + ++ + ++I+DESH ++ SK +A L + KR++LLSGTP++
Sbjct: 504 LLSRLEKQLKLKPPFKVVIIDESHFLKNSKTA----RCRAALPLLKVAKRVILLSGTPAM 559
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLL 417
SRP +++ QI + P + + F YC K + G+ D+S L EL +LL
Sbjct: 560 SRPAELYTQIIAVKPTFFPQF-HTFGLRYCAAKKMPWGW------DYSGSSNLGELKLLL 612
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++ VM+RRLK +L QLP K+R+++ + R ++A+A + + + T DKT K+
Sbjct: 613 EEAVMLRRLKSDVLSQLPAKQRKMVVVAPGR---INARARAALDAAAMEMTTKDKTKKEQ 669
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
E A + + AK+ E++ D+ + R K ++FA
Sbjct: 670 KE-----ALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFA 707
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
HH VLD V + + K + +RIDG+T DR+ FQL +A++ ITA +GL
Sbjct: 708 HHKVVLDAVTKELERKHVQHIRIDGSTPSADREHLCQQFQLWERHAVAVLSITAANMGLT 767
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657
FSSA VVF EL +P +++QAEDR HR GQT++V I+ A+ T D+ W + + ++
Sbjct: 768 FSSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIHYLVARGTADDYLWPLIQEKIKV 827
Query: 658 VSSA 661
+ A
Sbjct: 828 LGEA 831
>gi|67479899|ref|XP_655331.1| helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472459|gb|EAL49943.1| helicase domain-containing protein [Entamoeba histolytica
HM-1:IMSS]
gi|449710588|gb|EMD49636.1| helicase, putative [Entamoeba histolytica KU27]
Length = 858
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 245/476 (51%), Gaps = 50/476 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P L + + +Q GV+FGLR+ GR LI DEMGLGKTLQA+A+ + + ILV+ P
Sbjct: 337 IPSKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTLQALALVSAYPENEHILVITPN 396
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
L W ++++RWL P DI ++ ++ V TRF VVISY + + +M
Sbjct: 397 SLVYQWCDQIQRWLDVD-PNDI-AIYKPKDIEVPNTRF---VVISYNSMANTQGNMFSHA 451
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ ++I DE H ++ T + K LDV K K+++ LSGTP+LSRP ++++ +++L
Sbjct: 452 FPMVICDECHFIK----TDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELYNILSVLI 507
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ K F K YC+ G ++++ +EL LL TVMIRRLK +L
Sbjct: 508 KDI--GTKESFGKRYCE------ETGTRYKNYLSMKNEKELKYLL-TTVMIRRLKHDVLK 558
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+LPPK R+ K +G ++ +E +K KD D + G + ++
Sbjct: 559 ELPPKIRE--------------KVYLGELDKNEYRECLEKMKKDLD--NARGVKQKRQQV 602
Query: 493 S--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
++ G+AK+ + +L D D + K+++FAHH VLDG+ +
Sbjct: 603 FELHRSTGLAKIPLIQAYL---------DDVLDSGIK----KVVVFAHHRDVLDGIVYNL 649
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
K + F+RIDG T +++ V F+ + ++A++ I A GL+F A +F E+
Sbjct: 650 QRKKVQFIRIDGETKSENKKELVDIFRDDDNCRVAVLSILAANCGLEFQKAALCIFAEMT 709
Query: 611 QSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
P MLQAEDR HR GQ + +V I A + DE W + K L V +GK
Sbjct: 710 FVPGEMLQAEDRIHRIGQQADSVKIEYLIANKSYDEQIWNTIEKKLDVVGKVLDGK 765
>gi|290976679|ref|XP_002671067.1| DEXH-box helicase [Naegleria gruberi]
gi|284084632|gb|EFC38323.1| DEXH-box helicase [Naegleria gruberi]
Length = 1385
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 165/566 (29%), Positives = 276/566 (48%), Gaps = 82/566 (14%)
Query: 144 NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILP 203
+ A I+V+ P + ++ ID + + L +E+ ++ K PK + + P
Sbjct: 288 DGASIQVQDFPEIVKLIINNYPQ-IDISKT-----DQLCNEL--DLAHKFPKQVWTKLRP 339
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +G+ F ++R GR L+ DEMG+GKTLQ ++ F +L++CP+ L+ +W +E+E
Sbjct: 340 FQKQGISFAVKREGRVLLGDEMGVGKTLQGLSTMYYFKQDWPLLIICPSSLKHNWGKEIE 399
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIEQD--------- 312
W + H + P + ++SYTM + +S +
Sbjct: 400 EWFITSERGHTDITMEKIKIISHGKQIPDNYINIVSYTMAANMLESQPCNNDGGGGGAIL 459
Query: 313 ----WALLIVDESHHVRCS--KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ +I DESH+++ S KR+S ++ + KR+V+++GTP+LSRP +++
Sbjct: 460 NGIKFNCIICDESHYLKNSSTKRSSH------IVPFLKQAKRLVMITGTPALSRPVEVYP 513
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
Q+N+L + F YCD K + Q D + ELN LL +TVMIRR
Sbjct: 514 QLNLLLDDKFTFTRSAFTYRYCDAK-----ETQFGLDDKGSSNVLELNYLLSRTVMIRRR 568
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH-----D 481
K+ +L +LP K+RQ + L +K S++ + + + ++ KT S+EH D
Sbjct: 569 KETVLSELPEKQRQRVLLSVKPSDLKQLEFSAERM---KRAIEKMKTAITSEEHNQSNFD 625
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
+ R+ Y G AKL +E++ D+ N K ++FA+H +
Sbjct: 626 KNSEIFRM----YTMTGKAKLPAVKEYIQ------------DMIENTGDLKFLVFAYHKE 669
Query: 542 VLDGVQEFIS----------------------EKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
V+DG++E ++ +G ++RIDG+T RQ+ V++F+ +
Sbjct: 670 VMDGIEECVALELAKFYNLKGQKKKSKDLQKKMRGDYYIRIDGSTDSNRRQNLVNTFRTN 729
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
++AI+ I A GVG + V+F EL +PS + QAEDR HR GQT+AV+I
Sbjct: 730 GHCRVAILSIKAAGVGYTMTPCSTVLFAELYWTPSDLRQAEDRVHRMGQTNAVSIKYLLG 789
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGK 665
KDT DE W L K L V + +G+
Sbjct: 790 KDTFDEYLWPLLQKKLEVVGKSVDGE 815
>gi|291392203|ref|XP_002712511.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Oryctolagus cuniculus]
Length = 954
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 164/509 (32%), Positives = 271/509 (53%), Gaps = 52/509 (10%)
Query: 180 HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC 239
H + +V + + + L+ ++PFQ V F + + GR L+AD+MGLGKT+QAI IAA
Sbjct: 414 HPTPDVPEADLSGVDSKLVSTLMPFQRAAVNFAIAKRGRLLLADDMGLGKTIQAICIAAF 473
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
+ +LVV P+ +R +W + RWLP P +++V ++ LT V ++S+
Sbjct: 474 YRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDRVNVVVTGKDC---LTAG-LVNIVSFD 529
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+L RL K + + ++I+DESH ++ SK +A + + KR++LLSGTP++S
Sbjct: 530 LLSRLDKQLKTASFKVVIIDESHFLKNSKTA----RCRAAMPLLKVAKRVILLSGTPAMS 585
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLK 418
RP +++ QI + P + + F YCD K G+ D+S L EL +LL+
Sbjct: 586 RPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRQPWGW------DYSGSSNLAELKLLLE 638
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
+ VM+RRLK +L QLP K+R+++ ++ R +SA+A + +++ T KT ++
Sbjct: 639 EAVMLRRLKADVLSQLPAKQRKMVVIVPGR---ISARARAALDAAAKEMTTTSKTKREQK 695
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
E A + + AK+ E++ D+ + R K ++FAH
Sbjct: 696 E-----ALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAH 733
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H VLD + + + K + +RIDG+T DR + FQLS +A++ ITA +GL F
Sbjct: 734 HKVVLDAITKELERKHVQHIRIDGSTSSADRDALCQQFQLSERHTVAVLSITAANMGLTF 793
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
SSA VVF EL +P +++QAEDR HR GQT++V I+ AK T D+ W + + ++ +
Sbjct: 794 SSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLIQEKIKVL 853
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTD 687
A + ++ EM++ TD
Sbjct: 854 GQA-----------GLSETNFSEMTEATD 871
>gi|401416969|ref|XP_003872978.1| putative SNF2/RAD54 related DNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489205|emb|CBZ24460.1| putative SNF2/RAD54 related DNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 958
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 212/832 (25%), Positives = 354/832 (42%), Gaps = 154/832 (18%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
LS V + + ++P L + Q+EGV+ LR GGR L AD+MG+GKT+QA+A A
Sbjct: 163 LSCAVPEIRLDRIPHLLRRTMKAHQVEGVKTALRWGGRILFADDMGVGKTIQALATVAA- 221
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYT 299
+ A +L+VCP++L+L WA+ +E++L + + IHL+ G N+ + + P+VV++SY
Sbjct: 222 LEAYPLLIVCPSVLKLMWADLIEQYLHEQVSVEEIHLIHG-ANDALSIDSQPKVVLVSYH 280
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M L K + + W L+ DESH + + ++ + V + + +LLSGTP+
Sbjct: 281 MAAVLEKQLQARSWKCLLCDESHLLHTNVSGADATYTRVVAAIGQRTPHCLLLSGTPATD 340
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P+D+F+QI+ L P LLG+++++FA YC + Q R E + LL+
Sbjct: 341 NPFDLFNQIDTLRPKLLGESRFEFAMRYCQLTFSPYLQ------VGGSTRRVEFSSLLRS 394
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RRLK+ +L +LP K R ++R+ + + S DA D
Sbjct: 395 CCMLRRLKEDVL-ELPRKSRVVMRVAHR--------------HGSHSDARRSGEAPYQDR 439
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
+ +S W + IAE A + +++++ AHH
Sbjct: 440 YANS------------------------WKANWNGIAE----AVEHCCSKYDRVVLLAHH 471
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
++++D + ++ + VRIDG + R +H+F + +IA+IGITA VG+ +
Sbjct: 472 IELIDSLVQWTRDHCKRAVRIDGRVPVQQRGDLLHTFH-RGDARIAVIGITACAVGISLA 530
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT-DESHWQNLNKSLRCV 658
AQ VF ELP + M QAEDR HR GQ V +Y + D + L +SL
Sbjct: 531 PAQCAVFCELPPDAAWMRQAEDRLHRPGQRDEVVVYYLLGLHSQFDAELFSRLCRSL--- 587
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASD 718
SD + L+L Q+A + L P S
Sbjct: 588 ------------------------SDAEESRGTSLSLSQIAHASH-PTLHPKPASKAP-- 620
Query: 719 FRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRP 778
T+ + L SK TD H S+ TG Y+ P ++R
Sbjct: 621 -----THGSVQPTAEPLLFCISKN------TDRIHVRASKSTG---FYTTFPWHEAR--- 663
Query: 779 LFESFRPEELDNTEHISGCL--KENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLS 836
C+ +++P ++ + F+ L P R +L+ + LP
Sbjct: 664 -----------------QCVQQRQDPVWQQ-LDTFLESVTRLSPFHRRQLVLRQAWLP-- 703
Query: 837 VELCYLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ 896
SGG +RR + ++ L G W+ R+ +R T
Sbjct: 704 -------PVFQWKSGGAAASAPRRRNRYAKTLT--LGWGVWWEVRRLYFPTRYYFGPLTA 754
Query: 897 GWTINDEPLCKLCQKT----------------CKSKNAKNAEYFEDLFCNLDCYEEYRLR 940
EP C C + C + N + +LFC+ C + +R
Sbjct: 755 SAKNEYEPGCLNCAASLPQLDRRAYIFVPGAICGAANGDS-----ELFCSGKCRLSFFIR 809
Query: 941 TSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIV-RVAPNV 991
SG +R + ++ VC++C +DC L + + + R ++ R+ P +
Sbjct: 810 RSGGVIRRSVAGVDKSVCSHCHVDCETLCTAVAAAAGRRERVAVIERLHPQL 861
>gi|119632040|gb|EAX11635.1| zinc finger, RAN-binding domain containing 3, isoform CRA_f [Homo
sapiens]
Length = 1017
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 239/458 (52%), Gaps = 42/458 (9%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAI I + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
V +V V+ Y +L K++I+ Q++ ++IVDESH+++ T + +L
Sbjct: 59 VRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRS----RILL 114
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ K +R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+ Y G+
Sbjct: 115 PIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKR 171
Query: 401 FQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
Q D L EL+ LL +MIRRLK +L QLPPK RQ I L AA
Sbjct: 172 PQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAK 223
Query: 460 VINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAES 518
+N S E+ +TP G R+ +++ IAK ++++ + + ++
Sbjct: 224 ELNTSFEEWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQN 276
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
D S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ
Sbjct: 277 D----------SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK 326
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+
Sbjct: 327 DPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLI 386
Query: 639 AKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
A T D W LN+ + S NG+ + +Q A EG
Sbjct: 387 ANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ--AEEG 422
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 836 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 895
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 896 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 929
>gi|119632036|gb|EAX11631.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
sapiens]
gi|119632038|gb|EAX11633.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
sapiens]
Length = 1019
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 158/458 (34%), Positives = 239/458 (52%), Gaps = 42/458 (9%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAI I + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
V +V V+ Y +L K++I+ Q++ ++IVDESH+++ T + +L
Sbjct: 59 VRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRS----RILL 114
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ K +R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+ Y G+
Sbjct: 115 PIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKR 171
Query: 401 FQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
Q D L EL+ LL +MIRRLK +L QLPPK RQ I L AA
Sbjct: 172 PQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAK 223
Query: 460 VINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAES 518
+N S E+ +TP G R+ +++ IAK ++++ + + ++
Sbjct: 224 ELNTSFEEWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQN 276
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
D S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ
Sbjct: 277 D----------SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK 326
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+
Sbjct: 327 DPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLI 386
Query: 639 AKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
A T D W LN+ + S NG+ + +Q A EG
Sbjct: 387 ANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ--AEEG 422
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 838 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 897
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 898 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 931
>gi|326500216|dbj|BAK06197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 295
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 169/276 (61%), Gaps = 16/276 (5%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALA 60
+ +TEEQR+R EA+RLAAL + L++SA A +++RL+KC + + P
Sbjct: 8 VRLTEEQRRRIEASRLAALER---LKRSAAAAGTTTESFRLAKCPRIA-HPLPPRPCPPP 63
Query: 61 DPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQ 120
P FR LE+CSPD F VT EG +PGE +CLR + ++ +P TQ
Sbjct: 64 QTLPPPAPPTGFRAVLELCSPDEFQVTVGRAEGKAFPGEADCLRAVEDCVASAVPFSTTQ 123
Query: 121 NNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH 180
+ SG + V+KL Y VL CLK G+ V+ IP+ T V+ +
Sbjct: 124 SQSGHISSVFKLVHYELVLQCLKKLTGVVVQDIPYRTRRAVQNAGTNCA----------- 172
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
SD+ VDE++ KLP+ L D +LPFQLEGV+FGLRR GRCLIADEMGLGKTLQAIAIA CF
Sbjct: 173 -SDKEVDELLMKLPRRLRDALLPFQLEGVKFGLRRQGRCLIADEMGLGKTLQAIAIACCF 231
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G +L+VCPA+LR +WAEELERW P LP DIHL
Sbjct: 232 KDEGPLLIVCPAVLRYTWAEELERWDPSFLPKDIHL 267
>gi|157817600|ref|NP_001101692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Rattus norvegicus]
gi|221222728|sp|B4F769.1|SMAL1_RAT RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; AltName:
Full=Sucrose nonfermenting protein 2-like 1
gi|149016063|gb|EDL75309.1| Swi/SNF related matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 (predicted) [Rattus
norvegicus]
gi|195540216|gb|AAI68154.1| Smarcal1 protein [Rattus norvegicus]
Length = 910
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 164/492 (33%), Positives = 265/492 (53%), Gaps = 54/492 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 389 LVSNLMPFQREGVSFAISKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRF 448
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P DI++V + LT V ++S+ +L +L K + + + ++
Sbjct: 449 TWEQAFLRWLPSLSPEDINVVVTGKG---RLTA-GLVNIVSFDLLSKLEKQL-KTPFKVV 503
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 504 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 559
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ VM+RRLK +L QLP
Sbjct: 560 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLP 612
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ + R +S +A ++ + K+ T DKT + E + +
Sbjct: 613 AKQRKMVVVNPGR---ISTRAKA-ALDAAAKEMTKDKTKQQQKEA---------LLVFFN 659
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ + R K ++FAHH +LD + + + K +
Sbjct: 660 RTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAHHKVLLDAIAKELERKNV 706
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR+ FQLS +A++ ITA +GL FSSA VVF EL +P +
Sbjct: 707 QHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGV 766
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V I+ AK T D+ W + + ++ L E +
Sbjct: 767 LIQAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 815
Query: 676 GVSYLEMSDKTD 687
++ EM++ TD
Sbjct: 816 ETNFSEMTEATD 827
>gi|303271539|ref|XP_003055131.1| SNF2 super family [Micromonas pusilla CCMP1545]
gi|226463105|gb|EEH60383.1| SNF2 super family [Micromonas pusilla CCMP1545]
Length = 1408
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 233/822 (28%), Positives = 344/822 (41%), Gaps = 143/822 (17%)
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
PRVVV SY M+ RLR W ++VDESH +R + E + + LD+ KR V
Sbjct: 406 PRVVVASYHMVARLRDKFRSVRWGAVVVDESHTLRTTTGRGEVDHTEVTLDIIRSTKRAV 465
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG--YQGQLFQDFSKGV 408
L +GTPSLSRPYD+F+Q++ L PG LG K++FA TYC+ + V Y G S G
Sbjct: 466 LATGTPSLSRPYDVFNQVDALQPGCLGSDKHEFASTYCERQWVADNPYSGTSHLSVSGGE 525
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
RL ELNVLL+ VMIRR+K+ ++ LPPKRRQ++ L E + K A G + +
Sbjct: 526 RLFELNVLLRHAVMIRRMKKDVVGDLPPKRRQVV---LIDCEGLDGKRAGGAGKKTHGAS 582
Query: 469 TNDKT---------------PKDSDEH--------------DDSGACCRLGKISYQELGI 499
++ P DE + A K Q + +
Sbjct: 583 QEEEEEEEEEDELDELDVIEPLAPDEERRSGSGAAGGRGGGRGAAAGGEAKKSKAQAVAL 642
Query: 500 AKLSGFREWLSIH-----PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ-EFISEK 553
KL+G +WL H A + AD +++IFAHH +VLD +Q E +
Sbjct: 643 QKLAGCCDWLREHLGLRRDANANASADADDVAEAERARVVIFAHHKEVLDAIQREVLDPL 702
Query: 554 GI-------------------GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
G+ FVRIDG+T +R AV F+ A+I I AGG
Sbjct: 703 GVVPATGADAAAAGAHARFLPSFVRIDGSTPNAERGEAVDRFRDDERCVAALISIKAGGT 762
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT----DESHWQN 650
GL+F A VVF ELP+S + + QAEDR HRRGQ +VN+Y A + D++ W +
Sbjct: 763 GLEFQKASVVVFAELPESAADVEQAEDRVHRRGQKGSVNVYFLVAHGSALARIDDARWNS 822
Query: 651 LNKSLRCV----SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
+ +SL V + L+ A+ G L G E + A
Sbjct: 823 IERSLNRVRQAVDAEEAADAKGLKPDAI-GADSLLPEPGVGEGMEAREGMEYAWGTLEDP 881
Query: 707 LMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLY 766
+ PE + EI ++ +D P D +S +TGR+HL+
Sbjct: 882 VETRPER---------DGEGEIQSQGDDG---GDSALALPPPPSDLWFELSPHTGRVHLH 929
Query: 767 SCVPGTDSRPRPLFESFRPEELDN-----TEHISG-----------------------CL 798
S G+ P ESF ++ + I G L
Sbjct: 930 SREDGSA----PRGESFAQNDVRRIAAVIADAIKGSTRLGVPPAVAVSDAADDDALPPSL 985
Query: 799 KENPGYRHAIQAFINEWNALRPIERTKLLGKPL--QLPLSVELCYLK-ETINHSSGGLLK 855
+ +P A F+ E +AL ++ +L + + P++ L + E+ N GG
Sbjct: 986 RNDPPAILAAWTFVREIDALYAADKNRLSQAHVATRSPVNDTLGAMSIESKNGGGGGGGA 1045
Query: 856 GGSKRRTTPSLEISH-PLPSGAEWKKVRI-CSGSRKKEKEYTQGWTINDEPLCKLCQKTC 913
G + TT + P+P AEW+ V + C + + +E + + + EPLC C +
Sbjct: 1046 AGEGKSTTRHGDGKRKPMPENAEWRPVAVRCGRTGRDVEERLEPVSGSGEPLCLQCMRVR 1105
Query: 914 KSKNAKNAEYFE-------------------------DLFCNLDCYEEYRLRTSGRFLRE 948
+ A DL+C+ +C++ S LR
Sbjct: 1106 AAPAAVAVVAVAAAAPTKATPALAHATAKAAVLSCKADLYCSRECFDIDSQTKSASKLRR 1165
Query: 949 ELFRIEHGVCTNCQLDCHKLVKHIKPL-SLEQRRKYIVRVAP 989
L+ E GVC C D VK I + S +RR+ I+ P
Sbjct: 1166 ALYERERGVCRLCGWDASACVKRIAVMRSRAKRREAILEDCP 1207
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 26/163 (15%)
Query: 130 YKLRDYNPVLTCLKNSAGIE----VEG---------IPWVTLNVVEKLSHSIDTGRWNPC 176
Y L Y P++ LK + I VEG IP T + K S+ C
Sbjct: 172 YPLAAYKPIVAELKRRSVINQAYVVEGKKAPANSAMIPPSTYRAMTKSFASV-------C 224
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI 236
E V+E LP+ L D + PFQ+EGV+F L R GRC +AD+MG+GKT+QA+A+
Sbjct: 225 EDE------VEERYESLPRRLRDAMYPFQVEGVKFALSRNGRCFLADQMGVGKTIQALAV 278
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG 279
A ++ G +L++ PA LRL+WA E ERW+P P ++H++ G
Sbjct: 279 GAAYLHEGPLLIIAPASLRLTWARECERWIPELRPKNLHVING 321
>gi|167539868|ref|XP_001741391.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165894093|gb|EDR22177.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 881
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 245/476 (51%), Gaps = 50/476 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P L + + +Q GV+FGLR+ GR LI DEMGLGKTLQA+A+ + + IL++ P
Sbjct: 360 IPIKLRNTMFEYQRIGVQFGLRKKGRLLIGDEMGLGKTLQALALVSAYPENEHILIITPN 419
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
L W ++++RWL P DI ++ ++ V TRF VVISY + + +M
Sbjct: 420 SLVYQWCDQIQRWLDVD-PNDI-AIYKPKDIEVPNTRF---VVISYNSMANTQGNMFSHS 474
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ ++I DE H ++ T + K LDV K K+++ LSGTP+LSRP ++++ +++L
Sbjct: 475 FPMVICDECHFIK----TDSSKRSKETLDVCKKAKQVIFLSGTPALSRPMELYNILSVLI 530
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ K F K YC+ G ++++ +EL LL TVMIRRLK +L
Sbjct: 531 KDI--GTKESFGKRYCE------ETGTRYKNYLSMKNEKELKYLL-TTVMIRRLKNDVLK 581
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+LPPK R+ K +G ++ +E +K KD D + G + ++
Sbjct: 582 ELPPKIRE--------------KVYLGELDKNEYRECLEKMKKDLD--NARGLKQKRQQV 625
Query: 493 S--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
++ G+AK+ + +L D D + K+++FAHH VLDG+ +
Sbjct: 626 FELHRSTGLAKIPLIQAYL---------DDVLDSGIK----KVVVFAHHRDVLDGIVYNL 672
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
K + F+RIDG T +++ V F+ + ++A++ I A GL+F A +F E+
Sbjct: 673 QRKKVQFIRIDGETKSENKKEFVDIFRDDDNCRVAVLSILAANCGLEFQKAALCIFAEMT 732
Query: 611 QSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
P MLQAEDR HR GQ + +V I A + DE W + K L V +GK
Sbjct: 733 FVPGEMLQAEDRLHRIGQQADSVKIEYLIANKSYDEQIWNTIEKKLDVVGKVLDGK 788
>gi|74005708|ref|XP_536062.2| PREDICTED: SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily a-like 1 [Canis lupus
familiaris]
Length = 961
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/591 (30%), Positives = 298/591 (50%), Gaps = 73/591 (12%)
Query: 150 VEGIPWVTLNVVEK---LSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQL 206
V +P V L+ + K L+ + + +PC L+ + + + + L+ +LPFQ
Sbjct: 393 VRCLPQVQLDPLPKTLTLAFASQLEKTSPC----LTQPIPEADLSGVDPKLVSSLLPFQR 448
Query: 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWL 266
GV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + RWL
Sbjct: 449 AGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRWL 508
Query: 267 PFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326
P P I++V ++ LT V ++S+ +L +L K + + + ++I+DESH ++
Sbjct: 509 PSLSPERINVVVTGKD---RLTAG-LVNIVSFDLLSKLEKQL-KTPFKVVIIDESHFLKN 563
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
K +A + + KR++LLSGTP++SRP +++ QI + P + + F
Sbjct: 564 IKTA----RCRAAMPLLKVAKRVILLSGTPAMSRPAELYTQIIGVRPTFFPQF-HAFGLR 618
Query: 387 YCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
YCD K G+ D+S L EL +LL++ VM+RRLK +L QLPPK+R+++ +
Sbjct: 619 YCDAKRQPWGW------DYSGSSNLGELKLLLEEAVMLRRLKCDVLAQLPPKQRKMVIIA 672
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
R +S +A + +++ T DKT + E + + AK+
Sbjct: 673 PGR---ISTRARAALDAVAKEMTTMDKTKQQQKEAL---------LLFFNRTAEAKIPSV 720
Query: 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
E++ D+ + R K ++FAHH VL V + +K + + IDG+T
Sbjct: 721 IEYI------------LDLLESGR-EKFLVFAHHKVVLSAVTRELEKKHVPHIHIDGSTS 767
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
DR+ FQL + +A++ ITA +GL F+SA VVF EL +P ++LQAEDR HR
Sbjct: 768 SADREDLCQQFQLFEKHAVAVLSITAANMGLTFTSADLVVFAELFWNPGVLLQAEDRVHR 827
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA----TNGK---------------- 665
GQ+S+V+I+ AK T D+ W + + ++ + A TN
Sbjct: 828 IGQSSSVSIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEAPNYFYKDPKQQ 887
Query: 666 --YDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESS 714
YD Q+ E S LE+ + + S D A + FQ+L P+ +
Sbjct: 888 KIYDLFQQSFEEDGSDLELLEAAE--SSDPRSASGAPGNDFQDLGDTPDGT 936
>gi|426221535|ref|XP_004004965.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1 [Ovis
aries]
Length = 937
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 173/554 (31%), Positives = 286/554 (51%), Gaps = 64/554 (11%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E+ + + ++ L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 EIPEADLSRVDSKLVSSLLPFQRAGVNFAVAQRGRLLLADDMGLGKTIQAICIAAYYRKE 470
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+LVV P+ +R +W + RWLP P DI++V ++ LT V ++S+ +L +
Sbjct: 471 WPLLVVVPSSVRFTWEQAFRRWLPSLNPVDINVVVTGKD---RLTDG-LVNIVSFDLLSK 526
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
L K + + + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +
Sbjct: 527 LEKQL-KPPFKVVIIDESHFLKNIKTA----RCRAAVPLLKVAKRVILLSGTPAMSRPAE 581
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ QI + P + + F YC K G+ D+S L EL +LL++ VM
Sbjct: 582 LYTQILAVKPTFFPQF-HAFGLRYCGAKRQPWGW------DYSGSSNLGELKLLLEEAVM 634
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT-NDKTPKDSDEHD 481
+RRLK +L QLP K+R+++ V A + + DA + T KD +
Sbjct: 635 LRRLKGDVLSQLPAKQRKMV---------VVAPGQINARTRAALDAAAKEMTTKDKTKQQ 685
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 686 QKEALI----LFFNRTAEAKIPSIIEYV------------LDLLESGR-EKFLVFAHHKV 728
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
VLD + + + K + +RIDG+T DR+ FQLS +A++ ITA +GL FSSA
Sbjct: 729 VLDAITKELERKRVQHIRIDGSTSSADREDLCQQFQLSPGPAVAVLSITAANMGLTFSSA 788
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
VVF EL +P +++QAEDR HR GQ S+V+I+ A+ T D+ W + + ++
Sbjct: 789 DLVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKV---- 844
Query: 662 TNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPESS 714
L E + ++ EM++ TD +D ++ D FQ+ M++ E++
Sbjct: 845 -------LGEAGLSETNFSEMTEATDYFYKDSKQQKI--YDLFQKSFEEDGSDMELLEAA 895
Query: 715 EASDFRAINTNDEI 728
E+ D + +T D +
Sbjct: 896 ESFDPGSQDTGDTL 909
>gi|403223543|dbj|BAM41673.1| uncharacterized protein TOT_040000054 [Theileria orientalis strain
Shintoku]
Length = 866
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 189/660 (28%), Positives = 296/660 (44%), Gaps = 152/660 (23%)
Query: 124 GGKACV-YKLRDYNPVLTCLKN--SAGIEVEGIPWVTLNVVEKLS---HSIDTGRWNPCR 177
G + CV YK +YN VL LK ++E IP L + S ++
Sbjct: 226 GKEKCVSYKASEYNNVLKALKGLVKDKGDIEPIPNFVLRSFPEFSGYAKEVEAEEKTKLI 285
Query: 178 PEHLSDEVVDEMIGK----LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
+ DE E + K + K L + + FQ EGV FGL++ GR LI DEMGLGK+LQA
Sbjct: 286 LKREQDEYTKENMSKKESLIGKVLWEKLFSFQKEGVNFGLKKNGRVLIGDEMGLGKSLQA 345
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV------FGHRNNPVHL 287
+AI+A + +L++CP+ L+ W E+ WLP + + L+ F N V++
Sbjct: 346 LAISAFYQKDWPLLIICPSSLKYQWMEQCVTWLPHLVTEEEILLIKTSKQFSKENMKVNV 405
Query: 288 TRFPR------------------------------------VVVISYTMLHRLRKSMIEQ 311
R R +V+ISY +L R +S +
Sbjct: 406 VRKRRKNTKQEHDESTASEEKYRSEYEGVSRGSESEGKPVKIVIISYDLLARAEES---E 462
Query: 312 DWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ +I DESH+++ SKRT K V + KR++LLSGTP L+ P +++ Q++
Sbjct: 463 HFETIICDESHYLKNSSSKRT------KKVCPILRSAKRVILLSGTPELNLPTELYEQVS 516
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+ PG +A F + YC K + + D +EL+ L TVMIRRLK
Sbjct: 517 SILPGF-SRASV-FNERYCKKKYNYFIKKMEYAD---SKHTQELHQFLTSTVMIRRLKND 571
Query: 430 LLVQLPPKRRQII------------RLLLK---RSEIVSAKAAVGVINDSEKDATNDKTP 474
+L QLPPK R I ++LL RS+ VS++ G ++ + ++
Sbjct: 572 VLTQLPPKIRSKIPIEIHERAIRTTKMLLDSNPRSDPVSSEGGAGTVH-----SLWEEMS 626
Query: 475 KDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
K + DD G + I+ + G AK SG ++ ++ + K
Sbjct: 627 KYIRKEDDEGEGSQKYMITKLFMLTGHAKTSGVCRYVE--------------EILENNEK 672
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ--------------- 577
IIFAHH+ +LD ++E + +K +G++RIDG T +R V FQ
Sbjct: 673 FIIFAHHVFMLDAIEETLRKKKVGYIRIDGTTKMEERSKMVQLFQNSGAETDRGQGEEAH 732
Query: 578 --------------------------------LSNEVKIAIIGITAGGVGLDFSSAQNVV 605
S V++A++ +T GVGL+ +S+ V+
Sbjct: 733 AREGAKSGEAASAPNQQGRYRQQQEDGQSSHRQSKTVRVALLSLTTCGVGLNLTSSSTVI 792
Query: 606 FLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
F EL P ++ QAEDR HR G + S +NI A+++ DE W+ +NK + ++S +G
Sbjct: 793 FAELYWVPGVLQQAEDRVHRIGTKFSTININYLIAQNSIDELMWKVINKKYKALTSTLDG 852
>gi|344239524|gb|EGV95627.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Cricetulus
griseus]
Length = 916
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 261/492 (53%), Gaps = 54/492 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 395 LVSNLMPFQREGVSFAISKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRF 454
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 455 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLSKLERQL-KTPFKVV 509
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 510 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVRPTFF 565
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 566 PQF-HTFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 618
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ L+ I + A E T DKT + E A + +
Sbjct: 619 AKQRKMV--LVNPGRISTRAKAALDAAAKE--MTKDKTKQQQKE-----ALI----VFFN 665
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ + R K ++FAHH VLD V + + K +
Sbjct: 666 RTAEAKVPCVIEYI------------MDLLESGR-EKFLVFAHHKVVLDAVVKELERKKV 712
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR+ FQLS +A++ ITA +GL FSSA VVF EL +P +
Sbjct: 713 QNIRIDGSTPSADREDLCQKFQLSTGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGV 772
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQTS+V I+ AK T D+ W + + ++ L E +
Sbjct: 773 LIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 821
Query: 676 GVSYLEMSDKTD 687
++ EM++ TD
Sbjct: 822 ETNFSEMTEATD 833
>gi|301770701|ref|XP_002920769.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Ailuropoda melanoleuca]
Length = 1087
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 158/457 (34%), Positives = 239/457 (52%), Gaps = 38/457 (8%)
Query: 224 EMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN 283
EMGLGKT+QAIAIA + +L+V P+ LR W EE+E+W+P P I ++
Sbjct: 75 EMGLGKTIQAIAIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELGPEGISVI--QNKT 132
Query: 284 PVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAV 339
V +V V+ Y +L + +++I+ Q + ++IVDESH+++ T K +
Sbjct: 133 DVGRISTSKVTVLGYGLLTKDAETLIDALNNQKFKVVIVDESHYMKSRNATRS----KIL 188
Query: 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQ 399
L + K KR +LL+GTP+L RP ++F QI L+P G ++AK YC+ ++ + +
Sbjct: 189 LPIVQKAKRAILLTGTPALGRPEELFMQIEALFPQKFG-TWTEYAKRYCNAH-IRFFGKR 246
Query: 400 LFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
D L EL+ LL +MIRRLK +L QLPPK RQ I +I SA AA
Sbjct: 247 PQWDCRGASNLNELHQLLSD-IMIRRLKTDVLTQLPPKVRQRIPF-----DIPSA-AAKE 299
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
+ E+ + P G RL +++ IAK ++++ + + ++D
Sbjct: 300 LNTSFEEWEKLMRAPNSGATETVMGLITRL----FKQTAIAKAGAVKDYIKM---MLQND 352
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ
Sbjct: 353 ----------SLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSSERIHLVNQFQKD 402
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ ++VNI+ A
Sbjct: 403 PDTRVAILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCTSVNIHYLVA 462
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
T D W LN+ + S NG+ + LQ A EG
Sbjct: 463 NGTLDTLMWGMLNRKTQVTGSTLNGRKEQLQ--AEEG 497
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 152/356 (42%), Gaps = 58/356 (16%)
Query: 672 IAVEGVSYLEMSDKTDRGS--EDLTLDQVASSDQFQELMKVPE----SSEASDFRAINTN 725
+ + +S + +K +G+ +D + + SSD ++++ E + + I
Sbjct: 659 LQIGSLSSTQDKNKNRKGNPQKDTSKNTWTSSDCEKQVLAPSEPNLFAESKKEILEIKRE 718
Query: 726 DEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRP 785
D +T + D+ L+ S D SP D S+ T RIHLY+ + +F P
Sbjct: 719 DRLTPQPGDEQLKSS--DDSPV-YDTLMFCASKNTDRIHLYT------KDGNQMNCNFIP 769
Query: 786 EE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL----PLSV 837
+ LD E + LK+N R I F+ EW++L +++ K++ K QL L++
Sbjct: 770 LDIKLDLWEDLPASFQLKQN---RSLILRFVREWSSLTTMKQ-KIIRKSGQLFCSPILAL 825
Query: 838 ELCYLKETINHSSGGLLK---------------GGSKRRTTPSLEISHPLPSGAEWKKVR 882
E ++T +S+ + GG R T E PS ++
Sbjct: 826 EEIAKQQTKQNSTKRYITKEDVAVASLDKVKKDGGHVRLITK--ESGPQEPSTQKFLDDG 883
Query: 883 IC-------------SGSRKKEKEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLF 928
+C +G K Y Q PLC CQ+ TC +K ++ F
Sbjct: 884 VCVPYLNPCTAPADLTGKPSISKGYLQAVDSEGNPLCLRCQQPTCHTKQKCKVNAWDSRF 943
Query: 929 CNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
C+L C EE+ +R++ +LR ++F IEHGVC C L+ +L ++ QR+ +
Sbjct: 944 CSLKCQEEFWIRSNNNYLRAKVFEIEHGVCQLCNLNAQELFLRLRDAPKSQRKNLL 999
>gi|145356928|ref|XP_001422675.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582918|gb|ABP00992.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 638
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 245/473 (51%), Gaps = 39/473 (8%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+PK+L + FQ GV + LRR GR LI DEMGLGKT+QA A+ AC+ L++ P
Sbjct: 149 VPKALDAKMFEFQRTGVMYALRRRGRVLIGDEMGLGKTVQACALLACYREECPALILVPT 208
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR +W L+ WL D+ V G + L ++ Y+++ +LR ++ +
Sbjct: 209 SLREAWRNALQSWLDVA-DGDVACV-GAASEGWKLDEGRPFDIVPYSLVVKLRSKLLAKR 266
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +++ DESH ++ + + +AV+ + R + L+GTP+LSRP ++F Q+ L
Sbjct: 267 YKIVVCDESHFLKDRR----AQRTQAVMPLLKDANRAICLTGTPALSRPIELFTQLEALV 322
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P + + ++ YC G F ++ +EL+V++ + M+RRLK+ +L
Sbjct: 323 PKVFARLN-EYGARYC-------ANGGPFGMYTGCTHADELHVMISKLCMVRRLKKDVLK 374
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
LPPK+R + L L++S + + ++++ + N+ K RL
Sbjct: 375 DLPPKQRTQVWLALEKSSMGDVRRIKSLLDELRQRGGNELEEK------------RLLNE 422
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ AK E+L ++ ++K + FAHH +LD V + +
Sbjct: 423 LFLASAKAKTKSVCEYLETL-------------IDGSTSKFLFFAHHGVLLDAVAQCMDA 469
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
K + +RIDG+T R V++FQ ++V++AI+ I A G+GL ++A V+F E+ +
Sbjct: 470 KKVKTIRIDGSTPAAVRGDLVNAFQRRDDVRVAILSIKAAGMGLTLTAASTVIFGEMVWT 529
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
P ++QAEDRAHR GQ S+V + AKDT DE WQ++ K L + + NG+
Sbjct: 530 PGDLIQAEDRAHRIGQQSSVLVQYLHAKDTIDEIIWQSIKKKLDNLGAVLNGQ 582
>gi|354473642|ref|XP_003499043.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Cricetulus griseus]
Length = 899
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 261/492 (53%), Gaps = 54/492 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 378 LVSNLMPFQREGVSFAISKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRF 437
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 438 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLSKLERQL-KTPFKVV 492
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 493 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVRPTFF 548
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 549 PQF-HTFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 601
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ L+ I + A E T DKT + E A + +
Sbjct: 602 AKQRKMV--LVNPGRISTRAKAALDAAAKE--MTKDKTKQQQKE-----ALI----VFFN 648
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ + R K ++FAHH VLD V + + K +
Sbjct: 649 RTAEAKVPCVIEYI------------MDLLESGR-EKFLVFAHHKVVLDAVVKELERKKV 695
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR+ FQLS +A++ ITA +GL FSSA VVF EL +P +
Sbjct: 696 QNIRIDGSTPSADREDLCQKFQLSTGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGV 755
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQTS+V I+ AK T D+ W + + ++ L E +
Sbjct: 756 LIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 804
Query: 676 GVSYLEMSDKTD 687
++ EM++ TD
Sbjct: 805 ETNFSEMTEATD 816
>gi|303389620|ref|XP_003073042.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
gi|303302186|gb|ADM11682.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
Length = 556
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 175/564 (31%), Positives = 289/564 (51%), Gaps = 89/564 (15%)
Query: 104 RRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEK 163
+RL LS + S Y +++ + V +DY V L+ + G+ + IP TL + +K
Sbjct: 54 KRLSTELSRLDESVYDVSSNEWRISV---KDYMAVKGGLRRN-GLVFDDIPKGTLRIAKK 109
Query: 164 LSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIAD 223
+ S + E++G + ++LPFQ EGV++ LR+GGR ++AD
Sbjct: 110 ETDSQEF-----------------ELLG----DIYGMLLPFQREGVQYALRQGGRIIVAD 148
Query: 224 EMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN 283
+MGLGKT+QA+A++ + S +L++ PA L WA+ R+L + +V + +
Sbjct: 149 DMGLGKTIQALAVSYYYRSEWPLLIIAPASLLEDWADACRRFL-----GEDAVVMRRKED 203
Query: 284 PVHLTRFPRVV-VISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVL 340
F +VV ++SY M ++ ++I DE H+++ +KRT KA++
Sbjct: 204 ------FGQVVGIVSYEMASSNGSVLLGSKAGVVIADECHYLKSMNTKRT------KAIV 251
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ + R +LLSGTP++SRP +++ I+ + + + ++ YC+ + V GQ
Sbjct: 252 PLLQRASRALLLSGTPAVSRPLELYPIISSIDRTIFPRFA-EYGARYCNGRKV----GQW 306
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
+ D+ EEL+ +LK+ +MIRR K +L QLPPK R+ + L K + AK VG
Sbjct: 307 Y-DYKGCSNAEELHYILKKCLMIRRTKDEVLSQLPPKFRRQVVLQCKGKQRDPAKELVG- 364
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
E+ D+ + Y+E K+ ++++S I E D
Sbjct: 365 ------------------ENVDTNVVAQ-----YREAVKLKIDQVKQYIS---TIVEKD- 397
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
K IIF HH++++DG++EF+ EKG+ +RIDG+T +R V SFQ +
Sbjct: 398 ----------MKFIIFCHHVEMMDGLEEFLREKGVSIIRIDGSTPSSNRHMLVKSFQENE 447
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
E+K A++ ITA GL ++ + VVF EL +P ++LQAEDR HR GQ ++V+I A+
Sbjct: 448 EIKTALLSITACSTGLTLTAGRAVVFAELYWNPGVLLQAEDRIHRIGQKNSVDIIYLVAR 507
Query: 641 DTTDESHWQNLNKSLRCVSSATNG 664
T DE W L L + S G
Sbjct: 508 GTIDEYVWPKLLSKLNVLESLGIG 531
>gi|74150596|dbj|BAE32320.1| unnamed protein product [Mus musculus]
Length = 910
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 177/552 (32%), Positives = 292/552 (52%), Gaps = 64/552 (11%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K T+ +L+VA KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIK-TARCRAAVPILNVA---KRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 768
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 769 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 817
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPESSEASDFRAIN-TNDE 727
++ EM++ TD +D Q D FQ+ M+ E++E+ + + + T+
Sbjct: 818 ETNFSEMTEATDYVHKD--PKQKTIYDLFQQSFEDDGNDMEFLEAAESFELGSTSGTSGN 875
Query: 728 ITAKMNDKLLEE 739
I+ + D L E+
Sbjct: 876 ISQDLGDLLDED 887
>gi|308498668|ref|XP_003111520.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
gi|308239429|gb|EFO83381.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
Length = 679
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 196/678 (28%), Positives = 321/678 (47%), Gaps = 91/678 (13%)
Query: 1 MEITEEQR-----QRAEANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFP 55
M +TEEQ+ +R EA R AA K K + + T++ R F + P H P
Sbjct: 1 MALTEEQKRMIAVKREEAIRRAAAIKEKEMLTATTSSVPFPPPARPV----FQSPPQHRP 56
Query: 56 KSALADPNSTTQLP-ENFRVRLEICSPDSFSVTP-------LAIEGFV----YPGEEECL 103
S Q NF ++ + + S+ P L +E + YP +
Sbjct: 57 PMKSTANTSIKQTTMNNFINMVQKPTTTTSSIKPTIGVKLKLDVEDRIRIEFYPFHSSIV 116
Query: 104 RRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEK 163
+ Q V +Y +S + + D++ + LKN+ ++VE +E+
Sbjct: 117 DLIKQ----VSSRNY---DSAKRTWTISINDHSNICNLLKNAQTVKVE---------LEQ 160
Query: 164 LSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIAD 223
+ +I G N +P+ ++ M +L++ + P+Q EGV F L R GR L+AD
Sbjct: 161 IPQNI-LGMLN-FKPKPTPSDLTQIM----DPTLIEKLFPYQKEGVLFALERNGRLLLAD 214
Query: 224 EMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF--GHR 281
EMGLGK++QA+ IA + + +L+VCPA ++ +W +++ + P IH +F
Sbjct: 215 EMGLGKSVQALTIARYYKADWPLLIVCPASVKGAWKKQINTFFPI-----IHRIFIVDKS 269
Query: 282 NNPVHLTRFPRVV-VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
++P+ R V ++SY + + + ++ +I DESH ++ K K
Sbjct: 270 SDPLPDVRTSNTVAIMSYEQMVLKHDVLKREKYSTIIFDESHMLKDGK----ARRTKVAT 325
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+++ ++LLSGTP+LSRP ++F QI M+ L ++FA YCD G QG+
Sbjct: 326 ELSKIAIHVILLSGTPALSRPAELFTQIRMVDHKLFTNF-HEFAVRYCD-----GKQGRF 379
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
+ EEL ++ + +MIRRLK +L LP KRR+++ VS
Sbjct: 380 CFEAKGCTNSEELAAIMFKRLMIRRLKADVLKDLPEKRREVV--------YVSGPTIDAR 431
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL---SIHPVIAE 517
++D +K A D +S E Y GI K + E + +P
Sbjct: 432 MDDLQK-ARADYEKVNSMERKHESLLE-----FYSLTGIVKAAAVCEHILENYFYP---- 481
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
D PR K++IFAHH VLD +Q ++++ +G +RIDG T R + SFQ
Sbjct: 482 -------DAPPR--KVLIFAHHQIVLDTIQVEVNKRKLGSIRIDGKTPSHQRTALCDSFQ 532
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+ +++A++ ITA GVG+ ++A VVF E+ +P ++QAEDRAHR GQ +V +
Sbjct: 533 NDDSIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYL 592
Query: 638 CAKDTTDESHWQNLNKSL 655
AK T D+ W + + L
Sbjct: 593 IAKKTADDVMWNMVQQKL 610
>gi|281337653|gb|EFB13237.1| hypothetical protein PANDA_009544 [Ailuropoda melanoleuca]
Length = 1008
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 238/456 (52%), Gaps = 38/456 (8%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAIAIA + +L+V P+ LR W EE+E+W+P P I ++
Sbjct: 1 MGLGKTIQAIAIAYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELGPEGISVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
V +V V+ Y +L + +++I+ Q + ++IVDESH+++ T K +L
Sbjct: 59 VGRISTSKVTVLGYGLLTKDAETLIDALNNQKFKVVIVDESHYMKSRNATRS----KILL 114
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ K KR +LL+GTP+L RP ++F QI L+P G ++AK YC+ ++ + +
Sbjct: 115 PIVQKAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWT-EYAKRYCNAH-IRFFGKRP 172
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
D L EL+ LL +MIRRLK +L QLPPK RQ I +I SA AA +
Sbjct: 173 QWDCRGASNLNELHQLLSD-IMIRRLKTDVLTQLPPKVRQRIPF-----DIPSA-AAKEL 225
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
E+ + P G RL +++ IAK ++++ + + ++D
Sbjct: 226 NTSFEEWEKLMRAPNSGATETVMGLITRL----FKQTAIAKAGAVKDYIKM---MLQND- 277
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
S K ++FAHHL +L E + E ++RIDG+ +R V+ FQ
Sbjct: 278 ---------SLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSSERIHLVNQFQKDP 328
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ ++VNI+ A
Sbjct: 329 DTRVAILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCTSVNIHYLVAN 388
Query: 641 DTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
T D W LN+ + S NG+ + LQ A EG
Sbjct: 389 GTLDTLMWGMLNRKTQVTGSTLNGRKEQLQ--AEEG 422
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 128/300 (42%), Gaps = 52/300 (17%)
Query: 722 INTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFE 781
I D +T + D+ L+ S D SP D S+ T RIHLY+ +
Sbjct: 636 IKREDRLTPQPGDEQLKSS--DDSPV-YDTLMFCASKNTDRIHLYT------KDGNQMNC 686
Query: 782 SFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQL---- 833
+F P + LD E + LK+N R I F+ EW++L +++ K++ K QL
Sbjct: 687 NFIPLDIKLDLWEDLPASFQLKQN---RSLILRFVREWSSLTTMKQ-KIIRKSGQLFCSP 742
Query: 834 PLSVELCYLKETINHSSGGLLK---------------GGSKRRTTPSLEISHPLPSGAEW 878
L++E ++T +S+ + GG R T E PS ++
Sbjct: 743 ILALEEIAKQQTKQNSTKRYITKEDVAVASLDKVKKDGGHVRLITK--ESGPQEPSTQKF 800
Query: 879 KKVRIC-------------SGSRKKEKEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYF 924
+C +G K Y Q PLC CQ+ TC +K +
Sbjct: 801 LDDGVCVPYLNPCTAPADLTGKPSISKGYLQAVDSEGNPLCLRCQQPTCHTKQKCKVNAW 860
Query: 925 EDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
+ FC+L C EE+ +R++ +LR ++F IEHGVC C L+ +L ++ QR+ +
Sbjct: 861 DSRFCSLKCQEEFWIRSNNNYLRAKVFEIEHGVCQLCNLNAQELFLRLRDAPKSQRKNLL 920
>gi|148667867|gb|EDL00284.1| Swi/SNF related matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1, isoform CRA_a [Mus
musculus]
Length = 922
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 289/552 (52%), Gaps = 64/552 (11%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 403 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 462
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 463 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 517
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 518 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 573
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 574 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 626
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 627 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 673
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 674 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 720
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 721 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 780
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 781 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 829
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPESSEASDFRAIN-TNDE 727
++ EM++ TD +D Q D FQ+ M+ E++E+ + + + T+
Sbjct: 830 ETNFSEMTEATDYVHKD--PKQKTIYDLFQQSFEDDGNDMEFLEAAESFELGSTSGTSGN 887
Query: 728 ITAKMNDKLLEE 739
I+ + D L E+
Sbjct: 888 ISQDLGDLLDED 899
>gi|229577278|ref|NP_061287.2| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Mus musculus]
gi|60390942|sp|Q8BJL0.1|SMAL1_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; Short=mharp;
AltName: Full=Sucrose nonfermenting protein 2-like 1
gi|26350593|dbj|BAC38933.1| unnamed protein product [Mus musculus]
gi|148667869|gb|EDL00286.1| Swi/SNF related matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1, isoform CRA_c [Mus
musculus]
Length = 910
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 289/552 (52%), Gaps = 64/552 (11%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 768
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 769 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 817
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPESSEASDFRAIN-TNDE 727
++ EM++ TD +D Q D FQ+ M+ E++E+ + + + T+
Sbjct: 818 ETNFSEMTEATDYVHKD--PKQKTIYDLFQQSFEDDGNDMEFLEAAESFELGSTSGTSGN 875
Query: 728 ITAKMNDKLLEE 739
I+ + D L E+
Sbjct: 876 ISQDLGDLLDED 887
>gi|20809351|gb|AAH29078.1| Smarcal1 protein [Mus musculus]
Length = 910
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 289/552 (52%), Gaps = 64/552 (11%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 768
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 769 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 817
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPESSEASDFRAIN-TNDE 727
++ EM++ TD +D Q D FQ+ M+ E++E+ + + + T+
Sbjct: 818 ETNFSEMTEATDYVHKD--PKQKTIYDLFQQSFEDDGNDMEFLEAAESFELGSTSGTSGN 875
Query: 728 ITAKMNDKLLEE 739
I+ + D L E+
Sbjct: 876 ISQDLGDLLDED 887
>gi|351712844|gb|EHB15763.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1, partial
[Heterocephalus glaber]
Length = 942
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 166/534 (31%), Positives = 279/534 (52%), Gaps = 54/534 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIP-WVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L D+N ++T ++ +++E +P VTL +L + + C L+ ++ +
Sbjct: 364 FLLEDHNKLITRARSLPQVQLEPLPKTVTLAFSSQLEKT------SLC----LTADIPEA 413
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ ++ L+ ++PFQ GV F + + GR L+AD+MGLGKT+QAI IA + +LV
Sbjct: 414 DLSEVDDKLVSNLMPFQRAGVNFAIAKRGRLLLADDMGLGKTIQAICIATFYRKEWPLLV 473
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +W + RWLP P I++V N LT V ++S+ +L +L + +
Sbjct: 474 VVPSSVRFTWEQAFLRWLPSLSPERINVVV---NGKGCLTA-GLVNIVSFDLLSKLERQL 529
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 530 -KTSFKVVIIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQI 584
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + + F YCD K G+ D+S L EL +LL++ +M+RRLK
Sbjct: 585 IAVKPTFFPQF-HAFGLRYCDAKRQHWGW------DYSGSSNLGELKLLLEEAIMLRRLK 637
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLP K+R+++ +V+ S A + T K + E
Sbjct: 638 SDVLSQLPAKQRKMV--------VVAPGRISAKARASLAAAAKEMTRKITKEQQKEALI- 688
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ + AK+ E++ D+ + R K ++FAHH VLD +
Sbjct: 689 ----VFFNRTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAHHKVVLDAIT 731
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ + K + +RIDG+TL DR++ FQLS +A++ ITA +GL FSSA VVF
Sbjct: 732 KELERKHVPHIRIDGSTLSADREALCQQFQLSERHSVAVLSITAANMGLTFSSADLVVFA 791
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
EL +P +++QAEDR HR GQTS+V I+ A+ T D+ W + + ++ + A
Sbjct: 792 ELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVARGTADDYLWPLIQEKIKVLGEA 845
>gi|384249916|gb|EIE23396.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 645
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/477 (31%), Positives = 249/477 (52%), Gaps = 32/477 (6%)
Query: 191 GKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250
G++P L ++ FQ +GVRF LR GGR LI DEMGLGKT+QA+A+ A F L++
Sbjct: 192 GRIPAKLEGRLMAFQRDGVRFALRHGGRALIGDEMGLGKTVQALALMAAFRDEWPCLIIV 251
Query: 251 PAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
P+ LR W + L WL +H+ ++ + ++ + ++ SY L L + +
Sbjct: 252 PSSLREQWVDALVEWLGIT-EEQVHVTNTRKDTDLTGRKY-QCLIASYNFLGNLEANDRD 309
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
D+ ++I+DE+H+++ +K++ ++ K + K KR +LLSGTP+ +RP ++F I+
Sbjct: 310 LDFRVVIMDEAHYIK-NKKSGRSQDAKPFVQ---KAKRAILLSGTPASARPRELFPLIDC 365
Query: 371 LWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLF--QDFSKGVRLEELNVLLKQTVMIRRLK 427
L P K + F + YC + +GQ F + EEL +L +MIRRLK
Sbjct: 366 LLPA--SKVSFTKFGERYCLTQN-HFPRGQSFYSNKYDGATETEELYHVLTSCIMIRRLK 422
Query: 428 QHLLVQLPPKRRQIIRLLL---KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
+ +L QLPPKRR + L L + ++ + + +G + + A D S + G
Sbjct: 423 KDVLSQLPPKRRTQVFLQLDAEAKKQLEAMQKEIGAVKAAVAAAKTDA----SLDSFGGG 478
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R Y K+ +E+L ++ +D K+++FAHH +LD
Sbjct: 479 TVKRTILDLYYRNAKLKVKAVQEYLK--ELLETTD-----------QKLLVFAHHKDMLD 525
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
G++ +++ ++RIDG+ R V+ FQ + +++ A++ I A G GL + A V
Sbjct: 526 GIEFIMNKTKQRYMRIDGSVKTSARADLVNDFQNNRDIRAAVLSIQAAGTGLTLTGASVV 585
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
VF E +P ++QAEDRAHR GQ ++VNIY+ A+ + D+ W L L V A
Sbjct: 586 VFAEYTWTPGDLVQAEDRAHRIGQATSVNIYMLHARGSVDDVIWAKLQSKLEHVGQA 642
>gi|221058248|ref|XP_002261632.1| DNA helicase [Plasmodium knowlesi strain H]
gi|194247637|emb|CAQ41037.1| DNA helicase, putative [Plasmodium knowlesi strain H]
Length = 1506
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 222/883 (25%), Positives = 378/883 (42%), Gaps = 118/883 (13%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
+ + ++E+ KLP+ + VILP+QLE V F ++ GR LIADEMGLGKTLQAI I F
Sbjct: 594 IKNRCLEEIKKKLPRRIQKVILPYQLESVYFFKKQNGRILIADEMGLGKTLQAICILH-F 652
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
L+V P+ L+L+WA E+E++LP PA + LV G N+ TR R++++S+ +
Sbjct: 653 FRLYPTLIVTPSSLKLNWACEIEKFLPAFDPAKV-LVVGDSNDFPRGTRIYRIIIVSFEL 711
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+L + + ++ L+IVDESH +R + + + K + K K+++ LSGTPS++R
Sbjct: 712 YRKLAHLINQINFKLIIVDESHFIRTVQYGKQSQLAKMIKGTLRKTKKVIFLSGTPSINR 771
Query: 361 PYDIFHQINMLWPG--LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
P +I+HQI L + K K+ F + +C +G + F + +R E ++ LK
Sbjct: 772 PINIYHQIKYLINNKKIFCKNKFTFGEEFCKKYFCRGE-----KIFEENLRSWEFHLFLK 826
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIND-----SEKDATNDKT 473
+TVMIRR + P ++ L S + V + SE+ T
Sbjct: 827 KTVMIRRSISDVFTSNFPDLKRFFVYLPHGSHTMDKDDQVNFFSSSPCAPSEEGNAIQST 886
Query: 474 PKDSDE----HDDSGACCR--LGKISYQELGIAKLSGFREWLS--IHPVIAESDGAADID 525
KDS+E D R L + + E+ K+ E LS +H + ++
Sbjct: 887 GKDSEEILSADSDFATPNRQALSEFFHVEIKTKKVE---EGLSKVVHAM-------KYME 936
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFI---------SEKGI-GFVRIDGNTLPRDRQSAVHS 575
+ K IIF +HL V ++E + +E+ I +V ++GN ++++ +
Sbjct: 937 RHFPGKKKIIFCYHLNVCKCIEEELLKMIKRKKQTEQAIVDYVVLNGNLSEKEKREKIQF 996
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
F++++ + I I + GLDF+ FLE P + + Q E R R+ Q ++
Sbjct: 997 FRMNHSCQYGIFTICSVSHGLDFTFCNLCFFLEFPINFFHLQQCESRLFRKNQQFDTYVF 1056
Query: 636 IFCAKD--TTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVS--------YLEMSDK 685
F K+ +D W+ S +G +++ E VS +
Sbjct: 1057 YFLLKNGLGSDYKTWRRFMLCAHSTRSILDGTEFVAKDLLYENVSGDMPMLSGHSGSCGG 1116
Query: 686 TDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHS 745
D + +Q + + + L P N+ +T++ +++LL +
Sbjct: 1117 GDLSRSSYSAEQTSCHPRNELLTNQPH------------NELLTSQPHNELLTRQPHNKF 1164
Query: 746 PTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEHISGCLKENPGYR 805
T ++ T RIH Y T+ F E L N E G K +
Sbjct: 1165 STRKGKFLFQINTLTNRIHAYYKNKKTN---------FLMEHLTNRE---GQDKSGTLLK 1212
Query: 806 HAIQAFINEWNALRPIERTKLLGKPLQLPLSV--------------------------EL 839
F+ +N L E+ + K + +SV +
Sbjct: 1213 KCATKFLQNYNKLSANEKKLIEKKKCDMHISVVRKLRHGENKMSPLKFERYIKNITTSDK 1272
Query: 840 CYLKETINHSSGGLLK------GGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKE 893
Y+K + +S G L+ KR T L+ LP A + K ++
Sbjct: 1273 TYMKTYLKNSFRGKLQIFYYQEYDEKRNTVKCLQCKSELPPRASANAIVGEYNIMKYLRD 1332
Query: 894 YTQGWTI----NDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREE 949
Y+ TI N+ K+ + C KN + ++FC C Y L+ S +R
Sbjct: 1333 YSDSATIEKFHNEFDTIKMHK--CNVKNICICDE-SNMFCEGKCRMFYFLKKSSTTIRRL 1389
Query: 950 LFRIEHGVCTNCQLDCHKLVKHIKP---LSLEQRRKYIVRVAP 989
++ + GVC C+LDC L++ IK S+ ++ Y ++ P
Sbjct: 1390 IYERDKGVCNICKLDCTILIRQIKSRKYFSINEKIHYFIKKYP 1432
>gi|355720705|gb|AES07019.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1 [Mustela putorius furo]
Length = 574
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 168/516 (32%), Positives = 276/516 (53%), Gaps = 49/516 (9%)
Query: 150 VEGIPWVTLNVVEK---LSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQL 206
V +P V L+ + K L+ + + +PC E + + ++ G PK L+ +LPFQ
Sbjct: 7 VRCLPQVQLDPLPKTLTLAFASQLEKTSPCLTEPIPEA---DLSGVDPK-LVSNLLPFQR 62
Query: 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWL 266
GV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + +WL
Sbjct: 63 AGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLQWL 122
Query: 267 PFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326
P P I++V ++ LT V ++S+ +L +L K + + + ++I+DESH ++
Sbjct: 123 PSLSPDCINVVVTGKD---RLTA-GLVNIVSFDLLSKLEKQL-KTPFKVVIIDESHFLKN 177
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
K +A + + KR++LLSGTP++SRP +++ QI + P + + F
Sbjct: 178 IKTA----RCRAAMPLLKVAKRVILLSGTPAMSRPAELYTQIIGVRPTFFPQF-HAFGLR 232
Query: 387 YCDVKT-VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
YCD K G+ D+S L EL +LL++ VM+RRLK +L QLPPK+R+++ +
Sbjct: 233 YCDAKRHPWGW------DYSGSSNLGELKLLLEEAVMLRRLKSDVLAQLPPKQRKMVVVA 286
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
R +S KA + +++ T DKT + E + + AK+
Sbjct: 287 PGR---ISTKARAALDAAAKEMTTTDKTKRQQKEA---------LLLFFNRTAEAKIPSV 334
Query: 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
E++ D+ + R K ++FAHH VL + + K + +RIDG+T
Sbjct: 335 IEYI------------LDLLESGR-EKFLVFAHHRIVLSAITTELERKHVPHIRIDGSTS 381
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
DR+ FQL + +A++ ITA +GL F+SA VVF EL +P ++LQAEDR HR
Sbjct: 382 SADREDLCQQFQLFEKHAVAVLSITAANMGLTFTSADLVVFAELFWNPGVLLQAEDRVHR 441
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
GQ+S+V+I+ A+ T D+ W + + ++ + A
Sbjct: 442 IGQSSSVSIHYLVARGTADDYLWPLIQEKIKVLGEA 477
>gi|224008246|ref|XP_002293082.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
CCMP1335]
gi|220971208|gb|EED89543.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
CCMP1335]
Length = 434
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 159/475 (33%), Positives = 252/475 (53%), Gaps = 57/475 (12%)
Query: 197 LLDVILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAIL 254
LL + PFQ + V F L+ G GR L+ DEMGLGKTL ++AI + + +L++CPA L
Sbjct: 1 LLSKLRPFQRKAVDFALQNGTGRILLGDEMGLGKTLTSLAIMLSYQQTEFPLLILCPASL 60
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH---RLRKSMIEQ 311
R +W E+E+ P+ I+ V G + F ++++Y++L ++ + E
Sbjct: 61 RYTWPAEIEKVCPWIPSTAIYCVKGKDD-----VGFAGEIIVTYSLLQERFQIANILKEC 115
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
++ +I DESH+++ + + L + KR++LLSGTP+L+RP +++ Q++ L
Sbjct: 116 NFQCIIADESHNLK----QLSSQRCQLALPLLQNSKRLLLLSGTPALNRPVELWPQVHAL 171
Query: 372 WP-----GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
P G G D+ K YC+ K + + D + +EL+ LK TVMIRRL
Sbjct: 172 DPKGKMFGKYGMRYNDYTKRYCNAK-----RTRFGWDVNGSSNADELHACLK-TVMIRRL 225
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K +L LP K+R I+ + +SA+ AV I D D + ++
Sbjct: 226 KSEVLHDLPSKQRAIVPV------TISARQAVSEIMDGVSDDMANSAHFEAR-------- 271
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
RL +YQ +GIAK E+ ++ DG+ S K+++FAHH +VLD +
Sbjct: 272 -RLLNQAYQAIGIAKAPASTEY-----IVDWLDGSDS------SQKLVVFAHHKEVLDYI 319
Query: 547 QEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+ IS K +G +RIDG+ P DR V FQ ++ +++AI+ +TA GVGL ++A +
Sbjct: 320 ETTISAKYKGRMGMIRIDGSVPPADRALRVRKFQTNDSIRLAILSMTAAGVGLTLTAASS 379
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD---TTDESHWQNLNKSL 655
++F EL P ++ QAEDR HR GQ +AVNI KD + D S W L + +
Sbjct: 380 IIFTELHWVPGVLAQAEDRCHRIGQVNAVNIMYAICKDEDVSVDRSLWAMLGRKV 434
>gi|399216084|emb|CCF72772.1| unnamed protein product [Babesia microti strain RI]
Length = 744
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 155/521 (29%), Positives = 272/521 (52%), Gaps = 53/521 (10%)
Query: 149 EVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEG 208
E+E +P + V H + R P + + DE+ ++ L D + PFQ +G
Sbjct: 249 EIEELP---VFVKRAFPHFCNDIRLKPYNISYSTTIDKDEVRTRIGDLLYDSLKPFQRQG 305
Query: 209 VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPF 268
V FG+ R G+ ++ DEMGLGKTLQA+AIAA + + +L+VCP+ LR W +E+ WLP
Sbjct: 306 VEFGISRAGKLILGDEMGLGKTLQALAIAAYYHNDWPLLIVCPSSLRFQWKDEILSWLPH 365
Query: 269 CL-PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327
+ +I+ + + + L R +++++SY L R+ + Q +A ++ DESH +
Sbjct: 366 LVNELEIYTIKTSKIKDLSL-RIHKILILSYDHLVRIGGYL--QHYACVVCDESHFI--- 419
Query: 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
+ + K +L + R++L SGTPSL+ P +++HQI L + DFA Y
Sbjct: 420 -KNKNAKRTKVLLPIMKNATRVILCSGTPSLNNPSELYHQIAPLVDKF--ASFNDFANRY 476
Query: 388 CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQ--IIRLL 445
++ + ++ +++ +EL+ L +T+M+RRLK+++ LP K R II +
Sbjct: 477 -SYSSIHKFSRKV--NYNGCKHGDELHSFLVRTIMLRRLKKNVQKDLPSKIRSKIIIDIS 533
Query: 446 LK-RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
++ +S+ + A + K+ ++ D+ A L + + AK G
Sbjct: 534 MELKSKFIPLLAQI----------------KNKEDIVDNNAIVELFNFTCE----AKREG 573
Query: 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564
++++ + ++K I+FAHH+ +LD ++ + + G+ ++RIDG+T
Sbjct: 574 VCDYVNY--------------LVGNNHKFILFAHHISMLDSLEGCVQKSGVDYIRIDGST 619
Query: 565 LPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624
R+ V FQ + KIAI+ +TA G GL+ ++A VV EL P L+ QAEDRAH
Sbjct: 620 SQCKREDLVKRFQTCEDCKIAILSLTACGQGLNLTAASIVVMTELYWVPGLLFQAEDRAH 679
Query: 625 RRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
R G ++Y AK+T DE W+ +++ + V++ +GK
Sbjct: 680 RIGAQGVTHVYYLIAKNTLDEVIWRLVSRKWKDVTNTLDGK 720
>gi|281340244|gb|EFB15828.1| hypothetical protein PANDA_001570 [Ailuropoda melanoleuca]
Length = 957
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 301/579 (51%), Gaps = 66/579 (11%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPW-VTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L ++N ++ ++ ++++ +P +TL +L + +PC E + + +
Sbjct: 377 FLLEEHNKLIQSVRCLPQVQLDPLPTTLTLAFASQLEKT------SPCLTEPIPEA---D 427
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ G PK L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA + +LV
Sbjct: 428 LSGVDPK-LVSNLLPFQRAGVNFAVAKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLV 486
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +W + +WLP P I++V ++ LT V ++S+ +L +L K +
Sbjct: 487 VVPSSVRFTWEQAFLQWLPSLSPDRINVVVTGKD---RLTAG-LVNIVSFDLLSKLEKQL 542
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 543 -KTPFKVVIIDESHFLKNIKTA----RCRAAMPLLKVAKRVILLSGTPAMSRPSELYTQI 597
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + + F YCD K G+ D+S L EL +LL++ VM+RRLK
Sbjct: 598 IGVRPTFFPQF-HAFGLRYCDAKRQPWGW------DYSGSSNLGELKLLLEEAVMLRRLK 650
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK+R+++ + R +S KA + +++ T + T + E A
Sbjct: 651 CDVLAQLPPKQRKMVVIAPAR---ISTKARAALAAAAKEMTTMNNTKRQQKE-----ALL 702
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ + AK+ E++ D+ + R K ++FAHH VL +
Sbjct: 703 ----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHHKVVLSAIT 745
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ K + +RIDG+T DR+ FQL + +A++ ITA +GL FSSA VVF
Sbjct: 746 RELERKHVPHIRIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLTFSSADLVVFA 805
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL +P ++LQAEDR HR GQ S+V+I+ A+ T D+ W + + ++
Sbjct: 806 ELFWNPGVLLQAEDRVHRIGQASSVSIHYLVARGTADDYLWPLIQEKIKV---------- 855
Query: 668 ALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
L E + ++ EM++ T+ +D ++ D FQ+
Sbjct: 856 -LGEAGLSETNFSEMTEATNYFYKDPKQQKIY--DLFQQ 891
>gi|301755790|ref|XP_002913754.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Ailuropoda melanoleuca]
Length = 959
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 301/579 (51%), Gaps = 66/579 (11%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPW-VTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+ L ++N ++ ++ ++++ +P +TL +L + +PC E + + +
Sbjct: 379 FLLEEHNKLIQSVRCLPQVQLDPLPTTLTLAFASQLEKT------SPCLTEPIPEA---D 429
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ G PK L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA + +LV
Sbjct: 430 LSGVDPK-LVSNLLPFQRAGVNFAVAKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLV 488
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P+ +R +W + +WLP P I++V ++ LT V ++S+ +L +L K +
Sbjct: 489 VVPSSVRFTWEQAFLQWLPSLSPDRINVVVTGKD---RLTA-GLVNIVSFDLLSKLEKQL 544
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 545 -KTPFKVVIIDESHFLKNIKTA----RCRAAMPLLKVAKRVILLSGTPAMSRPSELYTQI 599
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ P + + F YCD K G+ D+S L EL +LL++ VM+RRLK
Sbjct: 600 IGVRPTFFPQF-HAFGLRYCDAKRQPWGW------DYSGSSNLGELKLLLEEAVMLRRLK 652
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK+R+++ + R +S KA + +++ T + T + E A
Sbjct: 653 CDVLAQLPPKQRKMVVIAPAR---ISTKARAALAAAAKEMTTMNNTKRQQKE-----ALL 704
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ + AK+ E++ D+ + R K ++FAHH VL +
Sbjct: 705 ----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHHKVVLSAIT 747
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ K + +RIDG+T DR+ FQL + +A++ ITA +GL FSSA VVF
Sbjct: 748 RELERKHVPHIRIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLTFSSADLVVFA 807
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL +P ++LQAEDR HR GQ S+V+I+ A+ T D+ W + + ++
Sbjct: 808 ELFWNPGVLLQAEDRVHRIGQASSVSIHYLVARGTADDYLWPLIQEKIKV---------- 857
Query: 668 ALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706
L E + ++ EM++ T+ +D ++ D FQ+
Sbjct: 858 -LGEAGLSETNFSEMTEATNYFYKDPKQQKIY--DLFQQ 893
>gi|261334703|emb|CBH17697.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
DAL972]
Length = 952
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 242/488 (49%), Gaps = 56/488 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L+ + Q +G+ L GGR + ADEMG+GKTLQAI A ++A L+VCPA
Sbjct: 175 LPPKLMAALHRHQADGICKALSFGGRAMFADEMGVGKTLQAIGTLAA-LNAFPALIVCPA 233
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR WA+ELE+WL L D V ++ + + P+VVV S+ M+ L M +
Sbjct: 234 ALRHMWADELEKWLMDVLNMDDIRVITSSSDFLSRSDEPKVVVTSFHMVSLLANHMKSRQ 293
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVL-DVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W+ L+VDESH + S S +L ++ + K +LL+GTPSLS P+D+F+Q++ +
Sbjct: 294 WSSLVVDESHILHTSVDASCDAHYTTLLCELGRRTKYCLLLTGTPSLSTPFDLFNQVDTV 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG ++++FA YC ++ F+ F + R EL+ LL T MIRRLK L
Sbjct: 354 CPGLLGSSRFEFALRYCRIEF-----SPYFRTF-ECTRSTELHSLLNATCMIRRLKSETL 407
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
V LP K+R I+R+ ++ + + + + D + K D D C+ GK
Sbjct: 408 VDLPTKQRVILRI---PTDAIRGQKNKSLFQKAYSDNWIESREKILDIVD--LLLCKHGK 462
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
I ++FAHHL +LD + +++
Sbjct: 463 I-----------------------------------------VLFAHHLNLLDCLTTYVN 481
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
+K + ++RIDG T R + F +V +A++GITA VG+ + A +F ELP
Sbjct: 482 DKKVTWIRIDGGTPMNSRVELLSRFN-DGDVSVALVGITACAVGVRLTGASCALFAELPP 540
Query: 612 SPSLMLQAEDRAHRRGQTSAVNI-YIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
M QAEDR HR GQ + V + YI D + + L++ + V T+G +L
Sbjct: 541 DIGWMQQAEDRLHRPGQKNHVILYYIISTGSFFDGAQFSRLSRCFQAVRRITDGVKLSLD 600
Query: 671 EIAVEGVS 678
+ G +
Sbjct: 601 ASYLSGTA 608
>gi|47226328|emb|CAG09296.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 175/553 (31%), Positives = 269/553 (48%), Gaps = 84/553 (15%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY ++ L A +EVE +P VV+ S D E S +V +
Sbjct: 146 FSLEDYKRLMDLLSKIAAVEVEPLPRA---VVQAFSARFDG-------TEARSSQVPEAD 195
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + +L ++PFQ EGV F + R GR L+AD+MGLGKT+QAI IAA + S +LVV
Sbjct: 196 LSGVDPALTCSLMPFQREGVNFAVSRQGRLLLADDMGLGKTVQAICIAAYYRSEWPLLVV 255
Query: 250 CPAILRLSWAE----------------------------------ELERWLPFCLPADIH 275
P+ +R +WAE RWLP +I+
Sbjct: 256 APSSVRFTWAEGVIVLHLTKSRAPTSSGGTTKEELCDCGLSLLPAAFRRWLPSLSADNIN 315
Query: 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335
+V ++ + V +ISY +L R+ K + + +LI+DESH ++ K
Sbjct: 316 VVVKAKDG----LQSGLVNIISYDLLSRINKQS-GRPFNVLIMDESHFLKNMKTA----R 366
Query: 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
KA L + KR++LLSGTP++SRP +++ QI + P LL ++F YCD K
Sbjct: 367 CKAALPLLKAAKRVILLSGTPAMSRPSELYTQILAVRP-LLFPRFHEFGVRYCDAK---- 421
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAK 455
Q D+S L EL +LL++ +M+RRLK +L QLP K+R+++ +
Sbjct: 422 -QSTWGWDYSGSSNLGELKLLLEEALMLRRLKSDVLSQLPAKQRKVVTV----------- 469
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
+ IN K A + + + H + + Y AKL E+++
Sbjct: 470 -TIDGINSRIKAALSAAAKQLAKGHPNKKEEKEALLVFYNHTAEAKLQAIMEYIT----- 523
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
D+ R K ++FAHH VLD + + +K + ++RIDG+T +RQ
Sbjct: 524 -------DMLEGGR-EKFLVFAHHKLVLDHITAELEKKNVVYIRIDGSTPSAERQQLCEK 575
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
FQ S+ +A++ ITA +GL SA V+F EL +P +++QAEDR HR GQT+ VNI+
Sbjct: 576 FQFSSSSCVAVLSITAANMGLTLHSADLVIFAELFWNPGVLIQAEDRVHRIGQTNNVNIH 635
Query: 636 IFCAKDTTDESHW 648
AK + D+ W
Sbjct: 636 YLVAKGSADDHLW 648
>gi|290986627|ref|XP_002676025.1| predicted protein [Naegleria gruberi]
gi|284089625|gb|EFC43281.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 248/499 (49%), Gaps = 70/499 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++PK L + LPFQ GV FG+++ GR LI+DEMGLGKT+Q IAIA F + + +VCP
Sbjct: 3 RIPKQLQNSFLPFQKIGVEFGIKKEGRVLISDEMGLGKTIQCIAIATHFSNDWPLWIVCP 62
Query: 252 AILRLSWAEELERWL-----------PFCLPADIHLVFGHRNNPVHLTR-FPRVVVISYT 299
L+ +W +E+ +W+ F I+++ +N + + F + +ISY
Sbjct: 63 GSLKANWKKEILKWMGGQTVKVDGSDEFITSMQINVI----DNSSQVNKGFSLINIISYD 118
Query: 300 MLHR------LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVL 351
+L + + K ++ +++ DESH ++ SKR+ ++++ + + R +L
Sbjct: 119 LLAKDNIISLVEKEFEKKKKGVMVCDESHLLKSLSSKRS------QSLVPLLEQATRTIL 172
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGK---AKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
SGT +SRP ++F QI ++GK K +F YC + Y D+
Sbjct: 173 ASGTSCMSRPIELFSQIK----AIIGKNSIKKLEFGYRYCGLTQKPKYDS----DYKGSS 224
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
RL EL LL T+MIRRLK+ +L +LPPKRR L +K ++ K G+ DS+K
Sbjct: 225 RLSELYCLLSNTIMIRRLKRDVLTELPPKRRSKYYLHVKEEDL---KQINGIGGDSKKKF 281
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
K + D Y + AK+ G R +L + P
Sbjct: 282 YQKDWGKLQKDKDVIA--------KYVKTAEAKIDGIRSYLR--------------KIIP 319
Query: 529 RSNKMIIFAHHLKVLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+ K +IFAHH +V+D ++E + K ++RIDG T +DR+ H F+ + +AI+
Sbjct: 320 KKEKFLIFAHHRRVMDAIEETDDDVKTYEYIRIDGET--KDREGLAHHFRSTENCLVAIL 377
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA-VNIYIFCAKDTTDES 646
+ G GL+F VVF EL +P+L+ Q EDR HR GQ A V+I AK T D+
Sbjct: 378 SMNVAGCGLNFVPCSTVVFAELCWNPALLNQCEDRCHRIGQKGAFVDITYLLAKKTLDDF 437
Query: 647 HWQNLNKSLRCVSSATNGK 665
W L K A NG+
Sbjct: 438 MWDLLTKKADITDLALNGQ 456
>gi|209881905|ref|XP_002142390.1| helicase [Cryptosporidium muris RN66]
gi|209557996|gb|EEA08041.1| helicase conserved C-terminal domain-containing protein
[Cryptosporidium muris RN66]
Length = 836
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 186/650 (28%), Positives = 307/650 (47%), Gaps = 124/650 (19%)
Query: 104 RRLGQWL-----SDVMP-------SHYTQNNSGGK----ACVYKLRDYNPVLTCLKNSAG 147
R L WL S+V P H N+ G K + +Y Y + + NS
Sbjct: 208 RSLSNWLNSLNLSEVKPVTKKMKLYHSDLNDFGEKNLSGSYIYSGLYYERIYDSIMNSFE 267
Query: 148 IEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEV---VDEMIG------------- 191
+VE IP + +T + P+++ DE+ + IG
Sbjct: 268 CKVESIPDFIFECFPNFKLARET---HSATPKYIKDEISVSCNNCIGCHTNSICMNSLSF 324
Query: 192 ---KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+ PK L + PFQ G+ FGL+ GR LI DEMGLGKTLQA+++ + + S +L+
Sbjct: 325 LKEEFPK-LYGSLRPFQCVGILFGLKNNGRLLIGDEMGLGKTLQALSLISYYQSEWPVLI 383
Query: 249 VCPAILRLSWAEELERWL-PFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+CP+ +R W ++ WL P +++ L+ RN+ + ++++ISY +L R
Sbjct: 384 ICPSSIRFQWYQQSIEWLNPTINKSNVILI---RNSNDKYHKRAKIIIISYDLLVRNEYF 440
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + ++ ++I DESH ++ S + + ++ + KR +LLSGTP+L+ P +++
Sbjct: 441 RKFLNVEFNVIIADESHFLK----NSMAKRTQIIIPLLHNAKRAILLSGTPALNHPTELY 496
Query: 366 HQINMLWPGL-----------LGKAK-------------------YDFAKTYCDVKTVQG 395
QIN++ + L K K DFA Y DV+ +
Sbjct: 497 EQINVVVNQMNNLINDKRNKKLIKGKIMNDNINRSYARCPLFLKYLDFAHRYSDVR-INK 555
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR------- 448
+ + ++F EEL++ L+Q VMIRRLK+ +L +LPPK R + L +K
Sbjct: 556 FSRK--KEFYGSRNTEELHLFLRQCVMIRRLKKQVLHELPPKLRSKVPLEIKDKNGLKRI 613
Query: 449 SEIVSAKAAVGV--INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506
EI++ + IN +K+ ++K D D + C L K++ Q K+ +
Sbjct: 614 QEILNDENYNNNEDINKIQKEQYHNKEFDD----DLNVNMCNLHKLTCQ----VKIEAVQ 665
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE-----------KGI 555
E+ I ++ +D +K +IF HH ++LD ++ + + K
Sbjct: 666 EY--IEYMLDNND-----------DKFVIFGHHHEMLDAIETILVKRKRNKSLSEINKHF 712
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
++RIDG T R+ V FQ + K+A++ ITA G GL+ +SA V+F EL P
Sbjct: 713 VYIRIDGKTPGNKREEYVKEFQNNINCKVAVLSITACGQGLNLTSAGTVIFAELYWVPGF 772
Query: 616 MLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
MLQAEDR HR G Q S +NI+ A++T D+ W L K + ++S +G
Sbjct: 773 MLQAEDRCHRMGTQYSCINIHYLVAENTLDDKMWGILYKKQKIMASTLDG 822
>gi|299471835|emb|CBN77005.1| hypothetical protein Esi_0026_0017 [Ectocarpus siliculosus]
Length = 514
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 176/287 (61%), Gaps = 33/287 (11%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
E + ++ LP L + +LPFQ +GV +GLRR GRCLIADEMG GKTLQA+ + C+
Sbjct: 235 EPCEVLLYTLPAGLRETLLPFQRDGVLYGLRRRGRCLIADEMGTGKTLQALGVMGCYRED 294
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR-----FPRVVVISY 298
+L+V PA +RL WAEE+ERW PF P++IHL+ G+++ ++LT +PRVVV+SY
Sbjct: 295 WPLLIVAPASMRLMWAEEVERWYPFLAPSEIHLIKGNKDK-LYLTNVSRHLWPRVVVVSY 353
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCS--KRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
ML L S+ + DW +I DESH + S +++ ++V VA + KR+V+LSGTP
Sbjct: 354 FMLRMLSASVGKGDWKAVIFDESHMISTSLGGESAQSQQVTVCRQVAGRAKRVVMLSGTP 413
Query: 357 SLSRPYDIFHQINMLWPGLLG-----KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL- 410
SLS+P+D+F+Q+ L PGLLG KAK FA +YC G + S+G +
Sbjct: 414 SLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCG--------GTMRGQMSRGGHVN 465
Query: 411 -----------EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL 446
+EL++LL+ VMIRRLK +++ QLPP R+ L
Sbjct: 466 RVPFISGSEYPDELHLLLRNEVMIRRLKANVVNQLPPLRQASFFLFF 512
>gi|398011576|ref|XP_003858983.1| SNF2/RAD54 related DNA helicase, putative [Leishmania donovani]
gi|322497195|emb|CBZ32268.1| SNF2/RAD54 related DNA helicase, putative [Leishmania donovani]
Length = 958
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 211/828 (25%), Positives = 355/828 (42%), Gaps = 146/828 (17%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
LS V + + ++P L + Q+EGVR LR GGR L AD+MG+GKT+QA+A A
Sbjct: 163 LSCAVPETRLDRIPHLLRRAMKAHQVEGVRTALRWGGRILFADDMGVGKTMQALATVAA- 221
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYT 299
+ A +L+VCP+ L+L WA+ +E++L + + +H + G N+ + + P+VV++SY
Sbjct: 222 LEAYPLLIVCPSALKLMWADLIEQYLHEQVSVEEMHPIHG-ANDALSIDSQPKVVLVSYH 280
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M L K + + W L+ DESH + + ++ + V+ + + +LLSGTP+
Sbjct: 281 MAAVLEKQLQARSWKCLLCDESHLLHTNVSGADATYTRVVVAIGKRAPHCLLLSGTPATD 340
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P+D+F+QI+ L P LLG+++++FA YC + Q + R E + LL+
Sbjct: 341 NPFDLFNQIDTLRPNLLGESRFEFAMRYCQLTFSPYLQ------VGESTRRVEFSSLLRS 394
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RRLK+ +L +LP K R ++R+ + +G
Sbjct: 395 CCMLRRLKEDVL-ELPRKSRVVMRVAHR----------IG-------------------- 423
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
SGA C G+ YQE W + IAE A + +++++ AHH
Sbjct: 424 -PHSGARCS-GEAPYQE------RYANSWKANWNGIAE----AVEHCCSKYDRVVLLAHH 471
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
++++D + ++ + VRIDG + R +H+F E +IA+IGITA VG+ +
Sbjct: 472 IELIDSLVQWARDHCKRAVRIDGRVPVQQRGDLLHAFH-RGEARIAVIGITACAVGISLA 530
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT-DESHWQNLNKSLRCV 658
AQ VF ELP + M QAEDR HR GQ V +Y + D + L +SL
Sbjct: 531 PAQCAVFCELPPDAAWMRQAEDRLHRPGQRDEVVVYYLLGLHSQFDAELFSRLCRSL--- 587
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASD 718
S+ + L+L Q+A + +++ +S A
Sbjct: 588 ------------------------SEAEESRGASLSLSQIAHAS--HPALQLKPASNAQT 621
Query: 719 FRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRP 778
++ E LL +S+ TGRIH+ + SR
Sbjct: 622 HGSVQPTAE-------PLL----------------FCISKNTGRIHVRA------SRSTG 652
Query: 779 LFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVE 838
+ +F E K + F+ L P R +L+
Sbjct: 653 FYTTFPWHEARQCVQ-----KRQDLVWQQLDTFLESVARLSPFHRRQLV----------- 696
Query: 839 LC--YLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ 896
LC +L S G+ +RR + ++ + G W+ R+ +R T
Sbjct: 697 LCQAWLPPVFQWKSSGVAASAPRRRNRYAKTLT--VGWGVWWEVRRLYFPTRYYFGPLTA 754
Query: 897 GWTINDEPLCKLCQKTCKSKNAKNAEYF------------EDLFCNLDCYEEYRLRTSGR 944
E C C + + + A F +LFC+ C + +R SG
Sbjct: 755 AANNEYEAGCLNCAASLPQLD-RGAYIFVPGAICGAANGDSELFCSGKCRLSFFIRRSGG 813
Query: 945 FLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIV-RVAPNV 991
+R + ++ VC++C +DC L + + + R ++ R+ P +
Sbjct: 814 AIRRSVAGVDKSVCSHCHVDCETLCTSVAAAAGRRERVAVIGRLHPQL 861
>gi|146079608|ref|XP_001463808.1| putative SNF2/RAD54 related DNA helicase [Leishmania infantum
JPCM5]
gi|134067896|emb|CAM66177.1| putative SNF2/RAD54 related DNA helicase [Leishmania infantum
JPCM5]
Length = 958
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 209/821 (25%), Positives = 351/821 (42%), Gaps = 145/821 (17%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
LS V + + ++P L + Q+EGVR LR GGR L AD+MG+GKT+QA+A A
Sbjct: 163 LSCAVPETRLDRIPHLLRRAMKAHQVEGVRTALRWGGRILFADDMGVGKTMQALATVAA- 221
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYT 299
+ A +L+VCP+ L+L WA+ +E++L + + +H + G N+ + + P+VV++SY
Sbjct: 222 LEAYPLLIVCPSALKLMWADLIEQYLHEQVSVEEMHPIHG-ANDALSIDSQPKVVLVSYH 280
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M L K + + W L+ DESH + + ++ + V+ + + +LLSGTP+
Sbjct: 281 MAAVLEKQLQARSWKCLLCDESHLLHTNVSGADATYTRVVVAIGKRAPHCLLLSGTPATD 340
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P+D+F+QI+ L P LLG+++++FA YC + Q + R E + LL+
Sbjct: 341 NPFDLFNQIDTLRPNLLGESRFEFAMRYCQLTFSPYLQ------VGESTRRVEFSSLLRS 394
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RRLK+ +L +LP K R ++R+ + +G
Sbjct: 395 CCMLRRLKEDVL-ELPRKSRVVMRVAHR----------IG-------------------- 423
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
SGA C G+ YQE W + IAE A + +++++ AHH
Sbjct: 424 -PHSGARCS-GEAPYQE------RYANSWKANWNGIAE----AVEHCCSKYDRVVLLAHH 471
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
++++D + ++ + VRIDG + R +H+F E +IA+IGITA VG+ +
Sbjct: 472 IELIDSLVQWARDHCKRAVRIDGRVPVQQRGDLLHAFH-RGEARIAVIGITACAVGISLA 530
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT-DESHWQNLNKSLRCV 658
AQ VF ELP + M QAEDR HR GQ V +Y + D + L +SL
Sbjct: 531 PAQCAVFCELPPDAAWMRQAEDRLHRPGQRDEVVVYYLLGLHSQFDAELFSRLCRSL--- 587
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASD 718
S+ + L+L Q+A + +++ +S A
Sbjct: 588 ------------------------SEAEESRGASLSLSQIAHAS--HPALQLKPASNAQT 621
Query: 719 FRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDSRPRP 778
++ E LL +S+ TGRIH+ + SR
Sbjct: 622 HGSVQPTAE-------PLL----------------FCISKNTGRIHVRA------SRSTG 652
Query: 779 LFESFRPEELDNTEHISGCLKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPLSVE 838
+ +F E K + F+ L P R +L+
Sbjct: 653 FYTTFPWHEARQCVQ-----KRQDLVWQQLDTFLESVARLSPFHRRQLV----------- 696
Query: 839 LC--YLKETINHSSGGLLKGGSKRRTTPSLEISHPLPSGAEWKKVRICSGSRKKEKEYTQ 896
LC +L S G+ +RR + ++ + G W+ R+ +R T
Sbjct: 697 LCQAWLPPVFQWKSSGVAASAPRRRNRYAKTLT--VGWGVWWEVRRLYFPTRYYFGPLTA 754
Query: 897 GWTINDEPLCKLCQKTCKSKNAKNAEYF------------EDLFCNLDCYEEYRLRTSGR 944
E C C + + + A F +LFC+ C + +R SG
Sbjct: 755 AANNEYEAGCLNCAASLPQLD-RGAYIFVPGAICGAANGDSELFCSGKCRLSFFIRRSGG 813
Query: 945 FLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIV 985
+R + ++ VC++C +DC L + + + R ++
Sbjct: 814 AIRRSVAGVDKSVCSHCHVDCETLCTSVAAAAGRRERVAVI 854
>gi|401826672|ref|XP_003887429.1| Snf2/Rad54-like helicase [Encephalitozoon hellem ATCC 50504]
gi|395459947|gb|AFM98448.1| Snf2/Rad54-like helicase [Encephalitozoon hellem ATCC 50504]
Length = 559
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 252/483 (52%), Gaps = 66/483 (13%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
+DE +L + D++LPFQ EGVR+ L R GR +IAD+MGLGKT+QA+A++ + S
Sbjct: 111 MDEEEFELAGDIYDMLLPFQREGVRYALSRRGRIIIADDMGLGKTIQALAVSYYYRSEWP 170
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV-VISYTMLHRL 304
+L++ PA L WA+ +R+L + +V + + F + + V+SY +
Sbjct: 171 LLIIAPASLLDDWADACKRFL-----GEEAMVMRRKGD------FGQTIGVVSYEVASSN 219
Query: 305 RKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
++E ++IVDE H+++ +KRT KA++ + KV R +LLSGTP++SRP
Sbjct: 220 VSGLLEHKAGVVIVDECHYLKSLNTKRT------KAIVPLLQKVPRAILLSGTPAVSRPL 273
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ I + + + ++ YC+ G + L+ D+ EEL+ +LK+ +M
Sbjct: 274 ELYPIIASIDRTIFPRFA-EYGARYCN-----GRKVGLWYDYKGCSNAEELHYVLKKCLM 327
Query: 423 IRRLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
IRR K +L QLPPK RRQ+I G +D K+ E
Sbjct: 328 IRRTKDEVLSQLPPKFRRQVIL------------QCEGKQSDPRKEVVG--------ESV 367
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
D+ + Y+E K+ +++L+ + +S K ++F HH +
Sbjct: 368 DANVV-----VQYKEAVKLKMGPVKQYLAT--------------MLEKSMKFVVFCHHSE 408
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
++DG++EF E+ + +RIDG+ +R V FQ ++E+++A++ ITA GL ++
Sbjct: 409 MMDGIEEFFVERRVPMIRIDGSVPSGNRHPLVRDFQENDEIRVALLSITACSTGLTLTAG 468
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+ VVF EL +P ++LQAEDR HR GQ +V+I A+ T DE W L L + S
Sbjct: 469 RAVVFAELYWNPGVLLQAEDRIHRIGQKGSVDIIYLVARGTIDEYVWPKLLSKLNVLESL 528
Query: 662 TNG 664
G
Sbjct: 529 GIG 531
>gi|25395804|pir||F88481 protein C16A3.1 [imported] - Caenorhabditis elegans
Length = 866
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 241/466 (51%), Gaps = 48/466 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 371 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 430
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 431 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 485
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K K D++ ++LLSGTP+LSRP ++F QI ++
Sbjct: 486 YRTIIFDESHMLKDGK----ARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 541
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
L ++FA YCD G QG+ + EEL ++ + +MIRRLK +L
Sbjct: 542 HKLFTNF-HEFAIRYCD-----GKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLK 595
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
LP KRR+++ VS ++D +K A D +S E
Sbjct: 596 DLPEKRREVV--------YVSGPTIDARMDDLQK-ARADYEKVNSMERKHESLLE----- 641
Query: 493 SYQELGIAKLSGFREWL---SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
Y GI K + E + +P D PR K++IFAHH VLD +Q
Sbjct: 642 FYSLTGIVKAAAVCEHILENYFYP-----------DAPPR--KVLIFAHHQIVLDTIQVE 688
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
++++ +G +RIDG T R + SFQ + +++A++ ITA GVG+ ++A VVF E+
Sbjct: 689 VNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEI 748
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+P ++QAEDRAHR GQ +V + AK T D+ W + + L
Sbjct: 749 HFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 794
>gi|17552194|ref|NP_498400.1| Protein C16A3.1, isoform a [Caenorhabditis elegans]
gi|351047539|emb|CCD63219.1| Protein C16A3.1, isoform a [Caenorhabditis elegans]
Length = 687
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 241/466 (51%), Gaps = 48/466 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 192 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 251
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 252 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 306
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K K D++ ++LLSGTP+LSRP ++F QI ++
Sbjct: 307 YRTIIFDESHMLKDGK----ARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 362
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
L ++FA YCD G QG+ + EEL ++ + +MIRRLK +L
Sbjct: 363 HKLFTNF-HEFAIRYCD-----GKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLK 416
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
LP KRR+++ VS ++D +K A D +S E
Sbjct: 417 DLPEKRREVV--------YVSGPTIDARMDDLQK-ARADYEKVNSMERKHESLLE----- 462
Query: 493 SYQELGIAKLSGFREWL---SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
Y GI K + E + +P D PR K++IFAHH VLD +Q
Sbjct: 463 FYSLTGIVKAAAVCEHILENYFYP-----------DAPPR--KVLIFAHHQIVLDTIQVE 509
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
++++ +G +RIDG T R + SFQ + +++A++ ITA GVG+ ++A VVF E+
Sbjct: 510 VNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEI 569
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+P ++QAEDRAHR GQ +V + AK T D+ W + + L
Sbjct: 570 HFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 615
>gi|91089449|ref|XP_967843.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
gi|270011408|gb|EFA07856.1| hypothetical protein TcasGA2_TC005426 [Tribolium castaneum]
Length = 661
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 245/462 (53%), Gaps = 44/462 (9%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++PFQ EGVRFG+ + GRCLIAD+MGLGKT QA+ IA + + +L+V + ++ W E
Sbjct: 173 LMPFQQEGVRFGIDKNGRCLIADDMGLGKTFQALGIANYYKNDWPLLIVTTSSMKNVWEE 232
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
+ R+LP I + ++ RV+++S+ M+ R +++++ + +LI+DE
Sbjct: 233 TIHRYLPSVPIFQIQYMTSGKD----YIGDSRVLIVSHDMMSRYVDNLLKKQFGVLIIDE 288
Query: 321 SHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK 380
SH+++ K A K KR+VLLSGTP+LSRP ++F Q++++ G
Sbjct: 289 SHNLKNFKAKCTKAATAL----AKKAKRVVLLSGTPALSRPSELFSQLSLIDDKFFGNF- 343
Query: 381 YDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
+D++K YCD K+ G+ D S L+EL ++L + MIRR K+ +L LP K +
Sbjct: 344 FDYSKRYCDGKSTNFGW------DASGKSNLQELEIVLNRKFMIRRTKEEVLKSLPNKSQ 397
Query: 440 QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499
E+V+ + + +K+ N K + + K S ++ I
Sbjct: 398 ----------EVVTLDVNLNQFSVEDKECLNALAAKYASQ-----------KKSAEKHAI 436
Query: 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
L+ F E I S + + V K ++FAHH +L+ V + +K + ++R
Sbjct: 437 L-LTFFSETAKIK---IPSVCSYILQVLKSGQKFLVFAHHQIMLNAVCNVLDKKNVKYIR 492
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
IDG+T R+ V FQL+++ +A++ ITA G+ ++AQ V+F EL +PS++ QA
Sbjct: 493 IDGSTTSEQRKFFVDKFQLNDDCLVAVLSITAANAGITLTAAQLVLFAELHWNPSILSQA 552
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHW---QNLNKSLRCV 658
E RAHR GQ + V I A T D+S W QN K L V
Sbjct: 553 ESRAHRIGQQNPVIIKYLLAPGTADDSIWPMLQNKQKILEEV 594
>gi|25148960|ref|NP_741192.1| Protein C16A3.1, isoform c [Caenorhabditis elegans]
gi|60390949|sp|Q8MNV7.1|SMAL1_CAEEL RecName: Full=Putative SMARCAL1-like protein
gi|351047541|emb|CCD63221.1| Protein C16A3.1, isoform c [Caenorhabditis elegans]
Length = 690
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 241/466 (51%), Gaps = 48/466 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 195 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 254
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 255 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 309
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K K D++ ++LLSGTP+LSRP ++F QI ++
Sbjct: 310 YRTIIFDESHMLKDGK----ARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 365
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
L ++FA YCD G QG+ + EEL ++ + +MIRRLK +L
Sbjct: 366 HKLFTNF-HEFAIRYCD-----GKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLK 419
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
LP KRR+++ VS ++D +K A D +S E
Sbjct: 420 DLPEKRREVV--------YVSGPTIDARMDDLQK-ARADYEKVNSMERKHESLLE----- 465
Query: 493 SYQELGIAKLSGFREWL---SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
Y GI K + E + +P D PR K++IFAHH VLD +Q
Sbjct: 466 FYSLTGIVKAAAVCEHILENYFYP-----------DAPPR--KVLIFAHHQIVLDTIQVE 512
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
++++ +G +RIDG T R + SFQ + +++A++ ITA GVG+ ++A VVF E+
Sbjct: 513 VNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEI 572
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+P ++QAEDRAHR GQ +V + AK T D+ W + + L
Sbjct: 573 HFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 618
>gi|25148958|ref|NP_498401.2| Protein C16A3.1, isoform b [Caenorhabditis elegans]
gi|351047540|emb|CCD63220.1| Protein C16A3.1, isoform b [Caenorhabditis elegans]
Length = 686
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 241/466 (51%), Gaps = 48/466 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ + P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + + +L+VCPA ++
Sbjct: 191 SLIERLFPYQKEGVIFALERDGRILLADEMGLGKSVQALTIARYYKADWPLLIVCPASVK 250
Query: 256 LSWAEELERWLPFCLPADIHLVF--GHRNNPV-HLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W ++L + P IH +F ++P+ + V ++SY + + ++
Sbjct: 251 GAWKKQLNTFFPI-----IHRIFIVDKSSDPLPDVCTSNTVAIMSYEQMVLKHDILKKEK 305
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +I DESH ++ K K D++ ++LLSGTP+LSRP ++F QI ++
Sbjct: 306 YRTIIFDESHMLKDGK----ARRTKVATDLSKVALHVILLSGTPALSRPSELFTQIRLID 361
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
L ++FA YCD G QG+ + EEL ++ + +MIRRLK +L
Sbjct: 362 HKLFTNF-HEFAIRYCD-----GKQGRFCFEAKGCTNSEELAAIMFKRLMIRRLKADVLK 415
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
LP KRR+++ VS ++D +K A D +S E
Sbjct: 416 DLPEKRREVV--------YVSGPTIDARMDDLQK-ARADYEKVNSMERKHESLLE----- 461
Query: 493 SYQELGIAKLSGFREWL---SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
Y GI K + E + +P D PR K++IFAHH VLD +Q
Sbjct: 462 FYSLTGIVKAAAVCEHILENYFYP-----------DAPPR--KVLIFAHHQIVLDTIQVE 508
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
++++ +G +RIDG T R + SFQ + +++A++ ITA GVG+ ++A VVF E+
Sbjct: 509 VNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEI 568
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+P ++QAEDRAHR GQ +V + AK T D+ W + + L
Sbjct: 569 HFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 614
>gi|407859780|gb|EKG07156.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
Length = 984
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/490 (33%), Positives = 242/490 (49%), Gaps = 66/490 (13%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
P HLS+ LP LL + Q++G+ L GR L ADEMG+GKTLQAI
Sbjct: 168 PFHLSE--------LLPARLLSALHQHQIDGICKALAFCGRALFADEMGVGKTLQAIGTV 219
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPRVVVI 296
A + A L+VCPA LR W EE+ERWL + DIH++ + + L+ P+VV+
Sbjct: 220 AA-LHAFPTLIVCPAALRHMWVEEVERWLAELIELEDIHVI-TSSSQFLSLSNAPKVVIT 277
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCS-KRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY M L M ++W ++VDESH + + +S+ V ++ + K +LLSGT
Sbjct: 278 SYHMASILATQMKSREWCCVVVDESHTLHTTLDASSDAHYTSLVCNLGKRSKYCLLLSGT 337
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
PSL+ P+D+F+QI+ L GLLG+ +Y+FA YC + ++ + VR EL+
Sbjct: 338 PSLTTPFDLFNQIDTLSDGLLGETRYEFALRYCRTEFSPHFK------VCECVRNVELHS 391
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL T MIRRLK L+ LP K+ R+L + E I+ K+ K
Sbjct: 392 LLVATCMIRRLKSETLIDLPSKQ----RILFRVPE--------KAIHGQRKEMYFQKEYA 439
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
S E I +L F L +P K+++
Sbjct: 440 LSWESKRDE--------------IMELVDF--LLKKYP------------------KVVL 465
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
FAHH+K+LD + + + + ++RIDG+T R +++ F + ++AIIGITA VG
Sbjct: 466 FAHHIKLLDCLMVHVGKLKVSWIRIDGSTPIYSRAASLSRFN-QGDARVAIIGITACAVG 524
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQNLNKS 654
+ ++A +F ELP + M QAEDR HR GQ V YI A D + L +S
Sbjct: 525 IQLTAASCALFAELPPDATWMQQAEDRLHRPGQEKHVVFFYIVGANSFFDSERFARLCRS 584
Query: 655 LRCVSSATNG 664
+ V T+G
Sbjct: 585 FQSVRRTTDG 594
Score = 40.4 bits (93), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYIV 985
D+FC+ C + ++ SG R L + G+C +CQ+DC L + + + R+ I+
Sbjct: 789 DMFCSGRCRAAFYIKRSGSVARRSLREADKGICVHCQVDCEMLCSLLGAATTWKEREAIL 848
Query: 986 -RVAPNV 991
R+ P +
Sbjct: 849 DRMHPQM 855
>gi|6693793|gb|AAF24985.1|AF088884_1 HepA-related protein Harp [Mus musculus]
Length = 910
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/492 (32%), Positives = 260/492 (52%), Gaps = 54/492 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+ R R+ FQLS +A++ I A +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDGSRPTRARELKCQRFQLSKGHTVALLSIPAANMGLTFSTADLVVFAELFWNPGV 768
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 769 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 817
Query: 676 GVSYLEMSDKTD 687
++ EM++ TD
Sbjct: 818 ETNFSEMTEATD 829
>gi|307191279|gb|EFN74926.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Camponotus
floridanus]
Length = 670
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 201/733 (27%), Positives = 344/733 (46%), Gaps = 102/733 (13%)
Query: 12 EANRLAALAKRKALQQSATTASNRQDAWRLSKCRKFSTEPTHFPKSALADPNSTTQLPEN 71
E RL ALA RK Q T + R + + K+ +P T +N
Sbjct: 11 EKKRLQALA-RKQQSQLNTQTTPRNSPMQQPNHNNSTNVMRSIRKNNRFNPIET----KN 65
Query: 72 FRVRLEICSPDSFSVT----PLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKA 127
F R + + + ++ L I FV P E + L DV +
Sbjct: 66 FFSRTSVLTGKCYMISNERFALEISSFV-PAVIETFKTLPSRAYDV----------KSRI 114
Query: 128 CVYKLRDYNPVLTCL-KNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVV 186
+ + +Y+ ++ L + + I + IP L + +K S+ + N ++
Sbjct: 115 WNFHINEYDTLMQKLIPHESNISITQIPQTILQIFKK---SLQSDHKN----------IL 161
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
+ + K+ K L+D ++PFQ +G+ FG+ + GRC+IAD+MGLGKT+QA+ IA F + +
Sbjct: 162 KQDLSKIDKKLVDSLMPFQRDGICFGISKSGRCMIADDMGLGKTIQALGIAHYFQESWPL 221
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L++ P+ +R W+E + +LP LP +H V H + ++++ISY +L R
Sbjct: 222 LIIVPSSVRYQWSETIYEYLP-SLP--MHYV-RHFTSGKDCIEDAKIIIISYDILIRAVN 277
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + + +I+DESH ++ +K +A + + +VLL+GTP+LSRP ++
Sbjct: 278 ILEKHIFGFVILDESHMLKSNKTI----RFQAAQKICVHARHVVLLTGTPALSRPIELHS 333
Query: 367 QINMLWPGLLGKAKY-DFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
QI+++ P + +Y D+ YC K V G+ DF+ ++EL +LLK T MIR
Sbjct: 334 QISLILPRFI---RYEDYGIRYCAGQKNVFGW------DFTGSSNMQELQLLLKTTCMIR 384
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK +L QLP K RQ+I L S++++ + + K+ T S EH+
Sbjct: 385 RLKSDVLSQLPSKTRQVIIL---DSDLINTHKRMNEMAKKLKNNT-------SLEHNTLL 434
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
Y E +L +++ ++ N R K +++AHH +LD
Sbjct: 435 Q-------YYTESSFVRLKAVCNYVT------------NLFENKR--KCLLYAHHQNILD 473
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ I ++RIDG T R+ + FQ ++ A++ ITA G+ ++A V
Sbjct: 474 AICNVAESMKIKYIRIDGKTNSEQRKHQIDQFQERDDYLAAVLSITAANAGVTLTAANLV 533
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL +P ++ QAEDR HR GQ V I A++T D+ W + L +++A
Sbjct: 534 VFTELFWNPGILCQAEDRVHRIGQNDNVIIQYLVARNTADDYIWPLIKNKLHVLNAAGLD 593
Query: 665 KYDALQEIAVEGVSYLEMSDKTDRGSEDLTL---------DQVASSDQFQELMKVPESSE 715
Q+++++ V + + + RG +DLT Q S + Q+ PE+S
Sbjct: 594 -----QDLSIDSV---DTTVQKKRGQQDLTSFLNTSLSLEKQSQSQENKQKNDSSPEAST 645
Query: 716 AS-DFRAINTNDE 727
++ DF+ + DE
Sbjct: 646 STNDFKQLLEIDE 658
>gi|269860391|ref|XP_002649917.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
gi|220066677|gb|EED44151.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
Length = 568
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/486 (31%), Positives = 246/486 (50%), Gaps = 60/486 (12%)
Query: 178 PEHLSD---EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI 234
P+H+ D ++ DE L + D ++PFQ +GV+FG+++ GR L+ADEMGLGKT+QA+
Sbjct: 110 PKHILDICLKIPDEDDPILQGDIYDKLMPFQKDGVKFGIKKQGRVLLADEMGLGKTIQAL 169
Query: 235 AIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294
AIA + S +L++ PA L W + ++L +I + N L + V
Sbjct: 170 AIAFYYHSNFPLLIIAPASLIHEWESAVSKFL------NIRGII--IKNKEDLNKTNSVS 221
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLL 352
+ISY + L S+ + ++ ++I DE H+++ SKRT E ++ + R++++
Sbjct: 222 IISYNLATTLYTSLNQLNYKVIICDECHYLKSLKSKRTKE------LIPILQNTLRLIMI 275
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
SGTP+LSRP ++F ++ L L ++ YCD K V GY D+ +E
Sbjct: 276 SGTPALSRPCELFPILHCLNKKLFRNFN-EYGTRYCDGKKVNGY-----MDYKGCSNSDE 329
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK 472
L LL++ +MIRR K +L LPPKRR+ I I+ + + + + +N
Sbjct: 330 LIFLLEKEIMIRRNKNDILTNLPPKRRKHI--------ILHSNSTI------DYTISNKT 375
Query: 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+ DD +L QE I I +I +D K
Sbjct: 376 AYYGNTVEDDVIKAYKLAAEIKQESVIN---------YIKKMITNND------------K 414
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++FAHH +++ ++ I ++RIDG T + R V FQ + E ++AI+ +TA
Sbjct: 415 FLVFAHHQTMINELENCCQNCNIYYIRIDGRTGKQKRYELVELFQTNTEYQVAILSLTAA 474
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
GL ++A++VVF EL +P ++QAEDR HR GQT+ V+IY K T DE W L
Sbjct: 475 STGLTLTAAKSVVFAELYWNPGTLMQAEDRIHRIGQTTPVDIYYLICKKTIDEIVWPYLL 534
Query: 653 KSLRCV 658
K L +
Sbjct: 535 KKLNIL 540
>gi|118372610|ref|XP_001019500.1| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila]
gi|89301267|gb|EAR99255.1| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila SB210]
Length = 731
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 256/485 (52%), Gaps = 34/485 (7%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVC 250
LP+S+L + +Q EG+RFG+ R LIADEMG+GKT+QAI +A ++ + ++V+C
Sbjct: 110 LPQSILKQLFNYQKEGIRFGMMNKCRILIADEMGVGKTIQAICLAFAYLKNLSKKMIVIC 169
Query: 251 PAILRLSWAEELERWLPFCLP----ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
P+ L+ W +E+ +W L + VF N+ + + ++++ SY ++
Sbjct: 170 PSSLKFYWKQEINKWYRVILNGRQVSQFIQVFQASNDQIE--QQTKILICSYDIIQSAIN 227
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + + L I DE+H+++ + + KA++ ++K ++LL+GTP+ ++P +++
Sbjct: 228 KIEKYNAFLGIADEAHYLK----NPDTKRSKAIIPYLKQLKHVILLTGTPAFAKPQEMYS 283
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+++L P + D+ K YC+ K + G D+S EL+ LL + +MIRRL
Sbjct: 284 LVSILRPDVFTNF-LDYGKRYCNPKKSNFHNGL---DYSGSSNELELHYLLTRYMMIRRL 339
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT-----NDKTPKDSDEHD 481
K+ +L +LP K+R+ I++ S S ++ + I KD T N +
Sbjct: 340 KKDVLNELPDKKRKKIKV----STDSSIQSQIAQILKKVKDKTLQILMNPPPNQQFQNEP 395
Query: 482 DSGACCRLGKISYQELGIA-KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
DS G +Q L LSG + + + E + D K+I+FA H+
Sbjct: 396 DSYFNGNHGSSQFQSLKTCYMLSGLAKQQQVLNYLEELLKSVD--------KVIVFAEHI 447
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
++LD +++F +++ ++RIDG+ ++ V SF+ + + IAI+ A +G+ +S
Sbjct: 448 QILDNIEKFANDRKKKYIRIDGSVRDEEKSIRVQSFENNKNISIAILSFGAASLGITLTS 507
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A N++F E+ +P++M QAEDRAHR GQ + V + + T D ++ + + + V +
Sbjct: 508 ASNILFAEMHWTPAIMEQAEDRAHRIGQKNPVTCHYLIGEGTLDNMLYKKILEKQQIVGA 567
Query: 661 ATNGK 665
+GK
Sbjct: 568 ILDGK 572
>gi|300708724|ref|XP_002996536.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
gi|239605845|gb|EEQ82865.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
Length = 594
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 242/481 (50%), Gaps = 74/481 (15%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
L + D + FQ E V + L R GR ++ D+MGLGKT+QA+ IA + +L++ PA
Sbjct: 156 LEGEIYDKMFVFQKEAVIYALNRAGRIILGDDMGLGKTIQALGIAYYYRIEWPLLIIAPA 215
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF-PRVVVISYTMLHRLRKSMIEQ 311
L +WA ++++L D +V T F ++ +ISY M + +
Sbjct: 216 SLLDNWAASIKQFLNL----DSKVVRAR-------TDFGDKISIISYDMCSKFIDIVNTY 264
Query: 312 DWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP---YDIFH 366
++ ++IVDE H+++ SKRT K +L + R++L+SGTP++SRP Y IF
Sbjct: 265 NYGVIIVDECHYIKSATSKRT------KNILPILQNAGRLILMSGTPAVSRPLELYTIFC 318
Query: 367 QINM-LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
++ L+P ++ YC+ + ++ + D+ EELN +L + MIRR
Sbjct: 319 AVDKNLFPNF-----SEYGIRYCNGRKIKQW-----YDYKGCTHAEELNFILNKYFMIRR 368
Query: 426 LKQHLLVQLPPK-RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
LK +L QLPPK RRQII + + D N D+ E G
Sbjct: 369 LKDQVLNQLPPKSRRQII-----------INCGLNI------DRKNISLVGDNVEQTAMG 411
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
Y+E KL PV D + ++ K IIFAHHL +++
Sbjct: 412 M--------YREAATQKL---------EPVKMYIDTILEKNI-----KFIIFAHHLSMME 449
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
G+ ++++K + F+++DG+ + RQ V+ FQ + V++A++ +TA GL ++A+ V
Sbjct: 450 GLSSYLADKKVNFIKMDGSVITSHRQRLVNEFQNNGNVRVALLSVTACNTGLTLTAAKLV 509
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
VF EL +P +LQAEDR HR GQ+S+V+I+ K T DE W L K L + S G
Sbjct: 510 VFAELYWNPGTLLQAEDRIHRIGQSSSVDIHYLVCKGTVDEYVWPILLKKLNVLQSLGMG 569
Query: 665 K 665
K
Sbjct: 570 K 570
>gi|195576640|ref|XP_002078183.1| GD23310 [Drosophila simulans]
gi|194190192|gb|EDX03768.1| GD23310 [Drosophila simulans]
Length = 755
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 164/530 (30%), Positives = 253/530 (47%), Gaps = 57/530 (10%)
Query: 130 YKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ L DY + T ++A ++ P+V +N + K +D R P PE +
Sbjct: 192 FDLSDYQSLTT---HAADLK----PYVHMNGIPK--KVLDLCRQPPVVPE-------SSV 235
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ + L D ++PFQ +GV F + + GR +I DEMGLGKT QA+A+A F +LV
Sbjct: 236 LASIEPKLADQLMPFQQDGVCFSIAQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVC 295
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
A R SWA+ + LP IH V NN +++ +V++ SY M+ R ++
Sbjct: 296 TTASTRDSWAKHIMDLLP---KVPIHYVQVLNNNQLYVGE-AKVLITSYNMMERHEDKLM 351
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
++ + +I DESH ++ SK K + D A KR+VLLSGTP+LSRP ++F Q+
Sbjct: 352 QRKFGFIIFDESHTLKNSKAKCT-TTAKRLTDQA---KRVVLLSGTPALSRPLELFTQLQ 407
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
M+ + +F YCD G Q D + LEEL V+L M+RR K
Sbjct: 408 MIDGKFMN--FMEFTTRYCD-----GKQSTFGWDANGQSNLEELKVILNSKYMLRRTKVE 460
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L QL K R+ + L D TN++T + D + +
Sbjct: 461 VLPQLAEKNRETVVL------------------DPALVWTNEETKETLDAFNKELKTAK- 501
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
G+ S + L R + V + A + K IIFAHH ++D + +F
Sbjct: 502 GRASEEIL-------LRFYARTAEVKTRAVCAYLKTIVKEQKKFIIFAHHRVMMDAISDF 554
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+S + ++RIDG T R +V +FQ + K+A++ + A G+ ++A+ +VF EL
Sbjct: 555 LSGLKVHYIRIDGQTRSDLRSDSVDTFQKKSSCKVALLSLKACNSGITLTAAEIIVFAEL 614
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+PS + QAE RAHR GQT V A +T D+ W L +S
Sbjct: 615 DWNPSTLAQAESRAHRIGQTKPVICRYLMAHNTADDIIWNMLKNKQEVLS 664
>gi|396081553|gb|AFN83169.1| Snf2/Rad54-like helicase [Encephalitozoon romaleae SJ-2008]
Length = 559
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 247/482 (51%), Gaps = 64/482 (13%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
VDE +L + D++LPFQ EGV++ L R GR ++AD+MGLGKT+QA+AI+ + S
Sbjct: 111 VDEEEFELFGDIYDMLLPFQREGVQYALSRRGRIVVADDMGLGKTIQALAISYYYRSEWP 170
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+L++ PA L WA+ +R+L + R T + ++SY +
Sbjct: 171 LLIIAPASLLEDWADACKRFL------GAEAMVMRRKEDFGQT----IGIVSYEVASSNA 220
Query: 306 KSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+++ + ++I DE H+++ +KRT KA++ + +V R VLLSGTP++SRP +
Sbjct: 221 NALLRCEVGVVIADECHYLKSLQTKRT------KAIVPLLQRVPRAVLLSGTPAVSRPLE 274
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ I + + + ++ YC+ G + L+ D+ EELN +LK+ MI
Sbjct: 275 LYPIIASIDRTIFPRFA-EYGARYCN-----GRKVGLWYDYKGCSNAEELNYILKKCFMI 328
Query: 424 RRLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
RR K +L QLPPK RRQ++ G +D K+ + +
Sbjct: 329 RRTKDEVLAQLPPKFRRQVVL------------QCEGKQSDPRKEVVGESVDMNV----- 371
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
+ Y+E K+ +++L+ + ++ K +IF HH ++
Sbjct: 372 --------VVQYREAVKLKMEQVKQYLA--------------TMMEKNMKFVIFCHHSEM 409
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
+DG++EF E+ + +RIDG+ +R V +FQ ++E+++A++ ITA GL ++ +
Sbjct: 410 MDGIEEFCVERKVPMIRIDGSIPSGNRHLLVKNFQENDEIRVALLSITACSTGLTLTAGR 469
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
VVF EL +P ++LQAEDR HR GQ S+V+I + T DE W L L + S
Sbjct: 470 AVVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVGRGTIDEYVWPKLLSKLNVLESLG 529
Query: 663 NG 664
G
Sbjct: 530 IG 531
>gi|12043930|gb|AAG47648.1| HepA-related protein HARP [Mus musculus]
Length = 900
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 258/492 (52%), Gaps = 63/492 (12%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTA-GLVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E A + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKE-----ALL----VFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG + FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDG---------SCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 759
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
++QAEDR HR GQT++V+I+ AK T D+ W + + ++ L E +
Sbjct: 760 LIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV-----------LGEAGLS 808
Query: 676 GVSYLEMSDKTD 687
++ EM++ TD
Sbjct: 809 ETNFSEMTEATD 820
>gi|357479211|ref|XP_003609891.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein [Medicago truncatula]
gi|355510946|gb|AES92088.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein [Medicago truncatula]
Length = 764
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/458 (32%), Positives = 235/458 (51%), Gaps = 47/458 (10%)
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF---GHRN------- 282
AI +AAC + +L++ P+ LRL WA +++WL +DI +V G N
Sbjct: 269 AIGVAACVQDSWPVLILAPSALRLQWASMIQQWLNIP-SSDILVVLSQIGGSNRGGFNIV 327
Query: 283 -----NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
+ +HL +ISY ++ +++ +++E D+ ++I DESH ++ ++ +
Sbjct: 328 SSSVKSKIHLDGL--FNIISYDLVPKMQSTLMESDFKVVIADESHFLK----NAQAKRTT 381
Query: 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG-- 395
A L V K + +LLSGTP+LSRP ++F Q+ L+P + K +++ YC ++
Sbjct: 382 ASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVY-KNVHEYGNRYCKGSSLSFAW 440
Query: 396 -YQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
QG +F + EEL+ L+K T MIRRLK+ +L +LP KRRQ + L L ++
Sbjct: 441 ILQG-MFGVYQGASNHEELHNLMKATTMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQI 499
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIH 512
A + + E+ K K S E +S + I+ Y + AK+ ++L
Sbjct: 500 NA---LFRELERVKAKIKAAK-SQEEAESLKFSKQNMINKLYTDSAEAKIPAVLDYLGT- 554
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
V K +IFAHHL ++D + EF+ +K + +RIDG T RQ
Sbjct: 555 -------------VIEAGCKFLIFAHHLPMIDAIHEFLLKKKVACIRIDGGTPSGSRQQL 601
Query: 573 VHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
V FQ + +K A++ I AGGVGL ++A V+F EL +P ++QAEDR HR GQ S+V
Sbjct: 602 VTEFQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQESSV 661
Query: 633 NIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
NIY A DT D+ W + L + +G + L+
Sbjct: 662 NIYYLLANDTVDDIIWDTVQSKLENLGQMLDGHENTLK 699
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI 234
K+P + +LPFQ +G+RF L+ GGR +ADEMGLGKTLQAI
Sbjct: 165 KIPSDVESKLLPFQRDGIRFILQHGGRAFLADEMGLGKTLQAI 207
>gi|28603792|ref|NP_788839.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Bos taurus]
gi|60390964|sp|Q9TTA5.1|SMAL1_BOVIN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1;
AltName: Full=HepA-related protein; AltName:
Full=Sucrose nonfermenting protein 2-like 1
gi|6651385|gb|AAF22285.1|AF173643_1 DNA-dependent ATPase A [Bos taurus]
gi|296490282|tpg|DAA32395.1| TPA: SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Bos taurus]
Length = 941
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/551 (30%), Positives = 283/551 (51%), Gaps = 60/551 (10%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
++ + + ++ L+ +LPFQ GV F + + GR L+AD+MGLGKT+QAI IAA +
Sbjct: 417 DIPEADLSRVDSKLVSSLLPFQRAGVNFAIAQRGRLLLADDMGLGKTIQAICIAAYYRKE 476
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
+LVV P+ +R +W + RWLP P DI++V ++ LT V ++S+ +L +
Sbjct: 477 WPLLVVVPSSVRFTWEQAFCRWLPSLNPLDINVVVTGKD---RLTDG-LVNIVSFDLLSK 532
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
L K + + + ++I+DESH ++ K V A + + KR++LLSGTP++SRP +
Sbjct: 533 LEKQL-KPPFKVVIIDESHFLKNIKTA-----VCAAMPLLKVAKRVILLSGTPAMSRPAE 586
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVK-TVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ QI + P + + F YC K G+ D+S L EL +LL++ VM
Sbjct: 587 LYTQILAVRPTFFPQF-HAFGLRYCGAKRQPWGW------DYSGSSNLGELKLLLEEAVM 639
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RRLK +L QLP K+ + RS + + T KD +
Sbjct: 640 LRRLKGDVLSQLPAKQPRWWWSPQARS--------MPGPEPPWMPPAKEMTTKDKTKQQQ 691
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
A + + AK+ E++ D+ + R K ++FAHH V
Sbjct: 692 KEALI----LFFNRTAEAKIPSIIEYI------------LDLLESGR-EKFLVFAHHKVV 734
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LD + + + K + +RIDG+T DR+++ SF ++ ++ ITA +GL FSSA
Sbjct: 735 LDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALR-GVLSITAANMGLTFSSAD 793
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
VVF EL +P +++QAEDR HR GQ S+V+I+ A+ T D+ W + + ++
Sbjct: 794 LVVFGELFWNPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADDYLWPLIQEKIKV----- 848
Query: 663 NGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQE---LMKVPESSEAS 717
L E + ++ EM++ TD S+D ++ + Q F+E M++ E++E+
Sbjct: 849 ------LGEAGLSETNFSEMTEATDYFSKDSKQQKIYNLFQKSFEEDGNDMELLEAAESF 902
Query: 718 DFRAINTNDEI 728
D + +T D++
Sbjct: 903 DPGSQDTGDKL 913
>gi|154335774|ref|XP_001564123.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061157|emb|CAM38179.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 958
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 234/457 (51%), Gaps = 55/457 (12%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
LS V + ++ ++P L + Q EGVR LR GGR L AD+MG+GKT+QA+A A
Sbjct: 163 LSRTVPETVLDRIPHLLRRTMKAHQEEGVRTALRWGGRILFADDMGVGKTMQALATVAA- 221
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYT 299
+ A +L+VCP+ ++L WA+ +E++L + D IHL+ G N+ + + P+VV++S+
Sbjct: 222 LEAYPLLIVCPSAVKLMWADLIEQYLHEQVSVDEIHLIHG-ANDALSIDVQPKVVLVSFH 280
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M L K + + W L+ DESH +R + + + V+ + + +LLSGTP
Sbjct: 281 MATVLEKQLRSRSWQCLLCDESHLLRTNISGVDAVYTRVVVAIGKRTPHCLLLSGTPVTD 340
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P+D+F+QI+ L P LLGK++++FA YC + T+ Y + R EL+ LL+
Sbjct: 341 TPFDLFNQIDTLRPSLLGKSRFEFAMRYCRL-TLSPY-----LQIGESTRRMELSSLLRS 394
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RRLK+ +L +LP K R ++R+ + P +
Sbjct: 395 CCMLRRLKEDVL-ELPRKSRVVMRV------------------------AHRLLPHSRER 429
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFRE-WLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
R G SYQE + ++E W I + D ++++ AH
Sbjct: 430 --------RSGDTSYQE---RYANSWKENWSGITEAVEHCCSKYD--------RVVLLAH 470
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H+ ++D + ++ + VRIDG + R + +F E +IAIIGITA VG+
Sbjct: 471 HIGLIDALVQWTRDHRKHAVRIDGRVPVQQRGDLLDAFH-RGEARIAIIGITACAVGISL 529
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+ AQ VF ELP + M QAEDR HR GQ V +Y
Sbjct: 530 APAQCAVFCELPPDAAWMRQAEDRLHRPGQRDEVVVY 566
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRR 981
+LFC+ C + +R SG +R + ++ GVC++C +DC L + ++ + R
Sbjct: 795 ELFCSGRCRVSFIIRRSGGAMRRSVAGVDKGVCSHCHVDCETLCTSVAAVTGRRER 850
>gi|332019805|gb|EGI60266.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Acromyrmex
echinatior]
Length = 693
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 160/526 (30%), Positives = 255/526 (48%), Gaps = 61/526 (11%)
Query: 130 YKLRDYNPVL-TCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH-LSDEVVD 187
+ L DYN +L T + + IP L + +K S DT PE+ LS +D
Sbjct: 145 FHLDDYNNLLKTLYSKHCDLSLTRIPEAVLRIFKKNLKS-DTQL-----PEYDLSK--ID 196
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E KL KSL+ PFQ EG+ +G+ + GRC+IAD+MGLGKT+QA+ IA + + +
Sbjct: 197 E---KLTKSLM----PFQREGICYGISKNGRCMIADDMGLGKTIQALGIAHYYKESWPLF 249
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+V P+ +R W+ + ++LP +P F H + + ++ + SY +L R +
Sbjct: 250 IVTPSSVRYQWSAAICKFLP-SVPVHYIHQFEHAKDRI---EDDKITITSYDLLVRAENT 305
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+ + +I+DESH ++ +K +A + + IVLL+GTP+LSRP +++ Q
Sbjct: 306 FAKHIYGFVILDESHFLKSNKTA----RFQAASRICTHARHIVLLTGTPALSRPIELYTQ 361
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
I++ P + D+ YC G + DF +EL VLLK MIRRLK
Sbjct: 362 ISLAIPHFMSYE--DYGIRYC-----AGQRSAYGWDFLGSSNSQELQVLLKLNCMIRRLK 414
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L Q+P K R++I L S +V D + + + + + A
Sbjct: 415 ADVLNQMPSKIREVIIL---DSGLVKT--------DKQMREMSQQLQTNISALERHNALI 463
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ Y + A++ R +++ ++ K I++ HH +LD +
Sbjct: 464 QY----YSQSSHARVKAVRNYVT--------------NLFKNKKKCILYGHHQIILDAIC 505
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
E I ++RIDG T RQ + FQ +E A++ ITA G+ ++A VVF
Sbjct: 506 EAAESVDIVYIRIDGKTSSEQRQLLIDKFQECDECLAAVLSITAVNTGVTLTAANLVVFT 565
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
EL +P ++ QAEDR HR GQ + V I A++T D+ W LNK
Sbjct: 566 ELFWNPGILSQAEDRVHRIGQNNIVTIQYLIAQNTADDYIWPLLNK 611
>gi|195472837|ref|XP_002088705.1| GE11268 [Drosophila yakuba]
gi|194174806|gb|EDW88417.1| GE11268 [Drosophila yakuba]
Length = 755
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 158/497 (31%), Positives = 233/497 (46%), Gaps = 58/497 (11%)
Query: 168 IDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGL 227
+D R P PE ++ + L D ++PFQ +GV F + + GR +I DEMGL
Sbjct: 221 MDLCRQPPIVPER-------SVLASIEPKLADQLMPFQQDGVCFSIAQKGRIMICDEMGL 273
Query: 228 GKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
GKT QA+A+A F +LV A R SWA+ + LP IH V NN ++
Sbjct: 274 GKTYQALAVADYFKDDWPLLVCTTASTRDSWAKHIMDLLP---RVPIHYVQVLNNNQQYV 330
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
+V++ SY M+ R ++++ + +I DESH ++ SK K + D A K
Sbjct: 331 GE-AKVLITSYNMMERHEDKLMQRKYGFIIFDESHTLKNSKAKCT-TTAKRLTDQA---K 385
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R+VLLSGTP+LSRP ++F Q+ M+ + +F YCD G Q D S
Sbjct: 386 RVVLLSGTPALSRPLELFSQLQMVDSKFMN--FMEFTTRYCD-----GKQSTFGWDASGQ 438
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD 467
LEEL V+L M+RR K +L QL K R+ + L D
Sbjct: 439 SNLEELKVILNLKYMLRRTKMEVLPQLAEKNRETVVL------------------DPALV 480
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE-WLSIHPVIAESDGAADI-- 524
TND+T D + +EL +K E L + AE A
Sbjct: 481 WTNDETKDTLDAFN-------------KELKTSKGRAMEEILLRFYARTAEVKSRAVCAY 527
Query: 525 --DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+ K IIFAHH ++D + + +S + ++RIDG T R +V +FQ +
Sbjct: 528 IKTLVKEQKKFIIFAHHRVMMDAISDCLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKSSC 587
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
K+A++ + A G+ ++A+ +VF EL +PS + QAE RAHR GQT V A +T
Sbjct: 588 KVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLMAHNT 647
Query: 643 TDESHWQNLNKSLRCVS 659
D++ W L +S
Sbjct: 648 ADDTIWNMLKNKQEVLS 664
>gi|24581780|ref|NP_608883.1| Marcal1 [Drosophila melanogaster]
gi|75027220|sp|Q9VMX6.2|SMAL1_DROME RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1
gi|22945611|gb|AAF52182.2| Marcal1 [Drosophila melanogaster]
gi|39752623|gb|AAR30193.1| RE44811p [Drosophila melanogaster]
gi|220948472|gb|ACL86779.1| Marcal1-PA [synthetic construct]
Length = 755
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 161/511 (31%), Positives = 240/511 (46%), Gaps = 60/511 (11%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGL 213
P+V +N + K +D P PE ++ + L D ++PFQ +GV F +
Sbjct: 209 PYVHMNGIPK--KVLDLCGQPPVVPER-------SVLASIEPKLADQLMPFQQDGVCFAI 259
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273
+ GR +I DEMGLGKT QA+A+A F +LV A R SWA+ + LP
Sbjct: 260 AQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVCTTASTRDSWAKHIMDLLP---KVP 316
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
IH V NN +++ +V++ SY M+ R ++++ + +I DESH ++ SK
Sbjct: 317 IHYVQVLNNNQLYVGE-AKVLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCT- 374
Query: 334 EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
K + D A KR+VLLSGTP+LSRP ++F Q+ M+ + +F YCD
Sbjct: 375 TTAKRLTDQA---KRVVLLSGTPALSRPLELFTQLQMIDGKFMN--FMEFTTRYCD---- 425
Query: 394 QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
G Q D + LEEL V+L M+RR K +L QL K R+ + L
Sbjct: 426 -GKQSTFGWDANGQSNLEELKVILHLKYMLRRTKVEVLPQLAEKNRETVVL--------- 475
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE-WLSIH 512
D TN +T + D + +EL AK E L +
Sbjct: 476 ---------DPALVWTNAETKETLDAFN-------------KELKTAKGRATEEILLRFY 513
Query: 513 PVIAESDGAADI----DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
AE A + K IIFAHH ++D + +F+S + ++RIDG T
Sbjct: 514 ARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDH 573
Query: 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
R +V +FQ + K+A++ + A G+ ++A+ +VF EL +PS + QAE RAHR GQ
Sbjct: 574 RSDSVDTFQKKSSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQ 633
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
T V A +T D+ W L +S
Sbjct: 634 TKPVICRYLIAHNTADDIIWNMLKNKQEVLS 664
>gi|170061901|ref|XP_001866436.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167880007|gb|EDS43390.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 706
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 162/545 (29%), Positives = 261/545 (47%), Gaps = 63/545 (11%)
Query: 120 QNNSGGKACVYKLRDYNPV---LTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPC 176
Q + G K + ++DY+ V +T L + + + IP L + ++ R P
Sbjct: 152 QYDPGTKNWTFDVKDYSMVQERVTAL--NPHVSIGPIPPFVLRI-------LNGQRSKPS 202
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI 236
R + + +L +L FQ EGV F + +GGR +IADEMGLGKT QAIA+
Sbjct: 203 RA----------CLSAIEPTLAASLLEFQKEGVCFAIEKGGRAMIADEMGLGKTYQAIAV 252
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
A + +L+ A R WA ++ + LP +P +H + ++ ++ RV++
Sbjct: 253 ADFYKEDWPLLICTTASTRDVWAAKIRQLLP-SVP--VHNIVTLQSGQDYIGE-ARVLIT 308
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY+M+ + + ++ +++ +I+DESH ++ K D+A + KR++LLSGTP
Sbjct: 309 SYSMMEKSAEKLLARNFGFVIMDESHTLKNFKAKC----TVVATDLAKQAKRVILLSGTP 364
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F Q++ML A +++ YC G Q Q D + L ELN+L
Sbjct: 365 ALSRPLELFSQVSMLDRKFF--AFREYSARYC-----AGRQTQFGWDATGQSNLPELNLL 417
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L MIRR KQ ++ QL K R+ + L D TN + +D
Sbjct: 418 LAAKFMIRRTKQDVMSQLAEKSRETVLL------------------DPSLLWTNQEMEED 459
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+ + + GK + + F+ + + A + A V K +IF
Sbjct: 460 LQTYAADYSISK-GKQREEIM-------FKYYNATAEAKAPAVCAYLQKVLKEGQKFLIF 511
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
AHH+K+LD V + + + +RIDG T R V+ FQ + + AI+ + A G+
Sbjct: 512 AHHIKMLDAVSRELDKLKVDHIRIDGTTRSDVRSELVNKFQTKDACRAAILSLKACNAGI 571
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
++AQ V+F EL +PS + QAE RAHR GQ AV + AK T D+ W L K
Sbjct: 572 TLTAAQLVIFAELDWNPSTLAQAESRAHRIGQEGAVLVRYLLAKGTADDIIWTMLQKKQT 631
Query: 657 CVSSA 661
++ A
Sbjct: 632 VLNKA 636
>gi|302831510|ref|XP_002947320.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
nagariensis]
gi|300267184|gb|EFJ51368.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
nagariensis]
Length = 986
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 246/512 (48%), Gaps = 80/512 (15%)
Query: 195 KSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254
+SL + ++PFQ +GVR LR GGR LI DEMGLGKT+QA + C+ LVV P L
Sbjct: 381 QSLDEKMMPFQRDGVRHALRLGGRALIGDEMGLGKTVQACCLLKCYAEDWPALVVVPKSL 440
Query: 255 RLSWAEELERWLPFC--------LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
R +WA+ L WL P D+ + G ++ P++VVISY L R
Sbjct: 441 RETWADALFMWLKLTDQEVFLINSPKDVDTLRGSWSSAK-----PKMVVISYDTLSRAGD 495
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + ++++DE+H+++ K + +A L + + + VLL+GTP+LS+P ++
Sbjct: 496 QIQKLKPQMVVLDEAHYIKNGK----AKRTEAALPLIKQARHAVLLTGTPALSKPNELVP 551
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ L+P KA F + YC + G + + F ELN LL+ VM+RR
Sbjct: 552 LLQGLFPTAGIKANA-FNERYCVPDFICCGIKSRHPGKFRGSKNETELNRLLQGVVMVRR 610
Query: 426 LKQHLLVQLPPKRRQ--IIRL---------LLKR---------SEIVSAKAAVGVINDSE 465
LK +L LP K+RQ IRL +KR + ++SA A G+ S
Sbjct: 611 LKADVLKHLPAKQRQQVFIRLPDKETRELGKMKRELEGIRAVANSMMSAGGASGLAGVS- 669
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
H+ RL +++ K + E+ S + E+DGA
Sbjct: 670 --------------HEQQQTIMRL----WRDTAEIKKTAVAEYCSD---LLEADGA---- 704
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K ++FAHH +LD V+ + ++RIDG T DR V FQ +VK+A
Sbjct: 705 ------KFLLFAHHKVLLDAVKSLKAR----YIRIDGGTSGDDRGRLVKQFQEDADVKVA 754
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ I A GVGL +++ VVF EL P + QAEDR HR GQ ++VNI+ + + DE
Sbjct: 755 ILSIKAAGVGLTMTASSLVVFAELSWVPGDIQQAEDRCHRIGQHTSVNIHFLLVRGSIDE 814
Query: 646 SHWQNLNKSLRCVSSATNG-----KYDALQEI 672
W L L V +G K D +E+
Sbjct: 815 LMWDTLQNKLSDVGKVLDGSGAFIKVDTTREV 846
>gi|194766057|ref|XP_001965141.1| GF23602 [Drosophila ananassae]
gi|190617751|gb|EDV33275.1| GF23602 [Drosophila ananassae]
Length = 752
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 185/640 (28%), Positives = 295/640 (46%), Gaps = 85/640 (13%)
Query: 114 MPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRW 173
MP+ NN+ + + L+DY + T ++A ++ P+V +N + K ID +
Sbjct: 175 MPTRSYDNNT--RIWNFDLKDYQSLQT---HTADLK----PYVHMNSIPK--KVIDLCQ- 222
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
+P D+ V + + L D ++PFQ +GV F + + GR +I DEMGLGKT QA
Sbjct: 223 ---KPPMALDKSV---LASIEPKLADKLMPFQQDGVCFAIAQMGRIMICDEMGLGKTYQA 276
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A+A F +LV A R SWA+ + LP IH + NN ++ +V
Sbjct: 277 LAVADYFRDDWPLLVCTTASTRDSWAKHVVELLP---KVPIHYLQVLNNNQQYVAE-AQV 332
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++ SY M+ R ++++ + +I DESH ++ K K + D A KR++LLS
Sbjct: 333 LITSYNMMERHMDKLLQRKYGFIIFDESHTLKNGKAKCTA-VAKRLTDQA---KRVILLS 388
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP+LSRP ++F Q+ M+ + + +F YCD G Q D + LEEL
Sbjct: 389 GTPALSRPLELFTQLQMVDSKFM--SFMEFTTRYCD-----GKQSTFGWDANGQSNLEEL 441
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
V+L M+RR K +L QL K R+ VI D +TN++T
Sbjct: 442 KVILTLKYMLRRTKTEVLPQLAEKNRET------------------VILDPALVSTNEET 483
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
D + GK+ + L R + V ++ A + K
Sbjct: 484 QTSLDAFSKELNSSK-GKMKEEIL-------LRFYARTAEVKTKAVCAYLKTLVKEKMKF 535
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
IIFAHH ++D + + ++E + ++RIDG T R V +FQ ++ K+A++ + A
Sbjct: 536 IIFAHHRVMMDAISDCLAELKVHYIRIDGQTRSDLRADFVDTFQKNSSCKVALLSLKACN 595
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW----- 648
G+ ++A+ ++F EL +PS + QAE RAHR GQT AV A T D++ W
Sbjct: 596 SGITLTAAEMILFAELDWNPSTLAQAESRAHRIGQTKAVICRYLMAHGTADDTIWAMLKN 655
Query: 649 ------------QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
+NL K+ + ++ K + A S K DRGS L
Sbjct: 656 KQEVLSKVGIFAENLQKATHTAAPTSSHKIEEYFSPAKAS------SAKPDRGSIKQYLS 709
Query: 697 QVAS---SDQFQELMKVPESSEASDFRAINTNDEITAKMN 733
+ + S+Q L E ++ SD A +D+ A M+
Sbjct: 710 PIPAKSHSEQNNNLKNTKEPNKESDIAAFFNDDDDEAFMD 749
>gi|401414014|ref|XP_003886454.1| putative SNF2 family N-terminal domain-containing protein [Neospora
caninum Liverpool]
gi|325120874|emb|CBZ56429.1| putative SNF2 family N-terminal domain-containing protein [Neospora
caninum Liverpool]
Length = 791
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 263/495 (53%), Gaps = 74/495 (14%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
+L+ + PFQLEG RFGL+R GR L+ DEMGLGKTLQA+AIAA + + LV+CP+ +R
Sbjct: 197 ALIKELKPFQLEGYRFGLQRNGRVLVGDEMGLGKTLQALAIAAFYHNEWPFLVICPSSIR 256
Query: 256 LSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W ++ RWL L D I LV R T ++V+IS + S+ Q
Sbjct: 257 FQWRDQALRWLSELLVLDEICLVKSGRAEIPGRT---KMVIISRPL------SLCLQ--- 304
Query: 315 LLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
++I DESH+++ +KRT +A+ + KR +LLSGTP+L+RP ++F Q + L
Sbjct: 305 VVICDESHYLKNYQAKRT------QAICPLLRSAKRAILLSGTPALNRPVELFQQFDALL 358
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL------EELNVLLKQTVMIRRL 426
P L TY + Y Q++ F++ EEL++LLK T+MIRRL
Sbjct: 359 PDLC---------TYREF--ADRYSVQVWNPFTRHFEYEGHQHPEELHLLLKHTIMIRRL 407
Query: 427 KQHLLVQLPPKRRQIIRLLL----------KRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
K+ + +LP K R + + + K +E+ + + + D P++
Sbjct: 408 KEQVHSELPRKIRSRVPIEIPAKELKEIREKMAELEAEGRPEAFLGGDSAMSGPDPNPEN 467
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+D+ + + + ++ + G+AK +G E+LS + +S G K+I+F
Sbjct: 468 TDQRVSASSSPLVVEL-FTLTGLAKRAGVCEFLS---YLFKSGG---------DMKVIVF 514
Query: 537 AHHLKVLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
AHH VLD ++E++ + + VRIDG T P+D++ E +A++ ITA G G
Sbjct: 515 AHHRAVLDYIEEYLQQTEKKQSVRIDGRT-PQDKR----------ERLVALLSITACGHG 563
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKS 654
L+ ++A V+F EL P M+QAEDR+HR G + S++ I+ A+ T DE+ ++ L +
Sbjct: 564 LNLTAAGTVIFAELYWVPGQMIQAEDRSHRIGTEFSSIQIHYLIAEGTLDETVFRILQRK 623
Query: 655 LRCVSSATNGKYDAL 669
R ++ +G+ L
Sbjct: 624 WRLMTCTLDGEQQQL 638
>gi|194856372|ref|XP_001968736.1| GG25032 [Drosophila erecta]
gi|190660603|gb|EDV57795.1| GG25032 [Drosophila erecta]
Length = 754
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 162/508 (31%), Positives = 238/508 (46%), Gaps = 54/508 (10%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGL 213
P+V L + K +D R P PE ++ + L D ++PFQ +GV F +
Sbjct: 208 PYVHLVGIPK--KVLDLCRQPPIVPER-------SVLASIEPKLADQLMPFQQDGVCFSI 258
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273
+ GR +I DEMGLGKT QA+A+A F +LV A R SWA+ + LP
Sbjct: 259 AQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVCTTASTRDSWAKHIMELLP---KVP 315
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
IH V NN ++ +V++ SY M+ R ++++ + +I DESH ++ SK
Sbjct: 316 IHYVQVLNNNQQYVGE-AKVLITSYNMMERHENKLLQRKYGFIIFDESHTLKNSKAKCT- 373
Query: 334 EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
K + D A KR+VLLSGTP+LSRP ++F Q+ M+ + + +F YCD
Sbjct: 374 TTAKRLTDQA---KRVVLLSGTPALSRPLELFTQLQMVDGKFM--SFMEFTTRYCD---- 424
Query: 394 QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
G Q D + LEEL VLL M+RR K +L QL K R+ + L
Sbjct: 425 -GKQSTFGWDANGQSNLEELKVLLNLKYMLRRTKVEVLPQLAEKNRETVVL--------- 474
Query: 454 AKAAVGVINDSEKDATN--DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511
A+ ND KD + +K K S + R Y K +L
Sbjct: 475 -DPALVWTNDETKDTLDAFNKELKTSKGREMEDLLLRF----YARTAEVKARAVCAYLKT 529
Query: 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
++ E K IIFAHH ++D + + +S I ++RIDG T R
Sbjct: 530 --LVKE------------QKKFIIFAHHRVMMDAISDCLSGLKIHYIRIDGQTRSDLRSD 575
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
V +FQ + K+A++ + A G+ ++A+ +VF EL +PS + QAE RAHR GQT
Sbjct: 576 FVDTFQNKSSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKP 635
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVS 659
V A T D++ W L +S
Sbjct: 636 VICRYLMAHKTADDTIWNMLKNKQEVLS 663
>gi|384245273|gb|EIE18768.1| hypothetical protein COCSUDRAFT_49196 [Coccomyxa subellipsoidea
C-169]
Length = 966
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 164/493 (33%), Positives = 252/493 (51%), Gaps = 73/493 (14%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P+ + + FQ EGVRF L+ GGR LIAD+MGLGKT+QAI +AACF + +LVVCP+
Sbjct: 177 IPRETWERLYEFQREGVRFALKHGGRALIADDMGLGKTVQAICVAACFHADWPLLVVCPS 236
Query: 253 ILRLSWAEELERWLPFCL---PADIHLVFGHR--NNPVHLTRFP----RVVVISYTMLHR 303
+ L+W E L WLP L PA++ ++ + + + L P +V+ SY +
Sbjct: 237 SMMLTWLELLSDWLPPDLLPDPANLVVITSSKDVDKKLDLAHGPPTTRHIVIASYDCAQK 296
Query: 304 LRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
LR E+ + ++I DESH ++ SKRT E + A +G P
Sbjct: 297 LRG--YERHFGMVICDESHALKSPGSKRTQFFEHLTA--------------AGGP----- 335
Query: 362 YDIFHQINMLWPGLLGKAKYD-FAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
I+ML PGL+G YD F + YC K VQ G++ D+ LEELN +L++
Sbjct: 336 ------IDMLRPGLMG--SYDEFGERYCGAK-VQVAPGKM--DWRGAQNLEELNGILREH 384
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
V+IRRLK+ +L +LP R R + +++ AV E + + S++
Sbjct: 385 VLIRRLKKDVLHELPQMTRS-RRTIPPDPDLLPMIEAV----KKEMAQLDLMAGRLSEQE 439
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
DS L ++ Y+ G AK+ E + + +N + K+++FAHH
Sbjct: 440 YDSQKRVLLMQL-YRATGPAKVKAACELI-------------ESALN-QGRKLLVFAHHK 484
Query: 541 KVLDGVQEF-----ISEKG----IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
VLD ++ I E G +G +RIDG + + R AV++FQ ++A++ I A
Sbjct: 485 GVLDALEAAVLRMRIGEDGRSHQVGHMRIDGRSTAQARGDAVNAFQNDPHCRVALLSIRA 544
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
G G+ +A V+F+EL +PS + QAE RAHR GQ V++ A + D+ W +
Sbjct: 545 AGAGITLHAASTVLFVELAWTPSELTQAEARAHRLGQEKEVDVLYLLAPGSVDDIIWSMV 604
Query: 652 NKSLRCVSSATNG 664
N LR V +A +G
Sbjct: 605 NSKLRVVGNALDG 617
>gi|291391484|ref|XP_002712469.1| PREDICTED: zinc finger, RAN-binding domain containing 3
[Oryctolagus cuniculus]
Length = 1062
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 239/489 (48%), Gaps = 74/489 (15%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L +LPFQ +G+ F L+R GRC++ADE F+ A +IL +
Sbjct: 29 LPDKLKAKLLPFQKDGITFALKRDGRCMVADEK-----------KKPFVKAETILGL--- 74
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-- 310
A + + H N + ++ V V+ Y +L +S+I+
Sbjct: 75 -------------------AYVVAILEHINRRISTSK---VTVLGYGLLTTDAQSLIDAL 112
Query: 311 --QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
Q++ ++IVDESH+++ T K +L + + KR +LL+GTP+L RP ++F QI
Sbjct: 113 NNQNFKVVIVDESHYMKSRNATRS----KILLPLVQRAKRAILLTGTPALGRPEELFMQI 168
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLK 427
L+P G D+AK YC+ Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 169 EALFPQKFG-TWTDYAKRYCNAHV--RYFGKRSQWDCRGASNLNELHQLLSD-IMIRRLK 224
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QLPPK RQ I L + +AK + EK K+P G
Sbjct: 225 TEVLTQLPPKIRQRIPFDLPSA---AAKELNASFEEWEKLM---KSPNSDATVTVMGLIT 278
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
R+ +++ IAK ++++ + + ++D S K ++FAHHL +L
Sbjct: 279 RM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQACT 321
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++A +VVF
Sbjct: 322 EAVIENKTRYIRIDGSVPSSERIRLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFA 381
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+ +
Sbjct: 382 ELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKE 441
Query: 668 ALQEIAVEG 676
LQ A EG
Sbjct: 442 RLQ--AEEG 448
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ TC +K A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 881 KGYLQAVDNEGNPLCLRCQHPTCHTKPECKANAWDSRFCSLKCQEEFWIRSNNSYLRAKV 940
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 941 FETEHGVCQLCHVNAQELFLRLRDAPKSQRKNLL 974
>gi|389601384|ref|XP_001565329.2| putative DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505021|emb|CAM42238.2| putative DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1096
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/555 (28%), Positives = 268/555 (48%), Gaps = 61/555 (10%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKL-----SHSIDTGRWNP 175
+ G+A +Y + Y +L LK I VE IP VE++ ++ D
Sbjct: 106 TAGQAFLYPMTQYTHLLAALKARPLPHIAVEEIPNFYFRCVERMRQLPRQYADDVASGRA 165
Query: 176 CRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
C P+ ++ + KL + PFQ +GVRF L R GR +IAD+MGLGKT+QAIA
Sbjct: 166 CLPD------TEDCVYKL-------LRPFQRDGVRFVLERHGRAMIADDMGLGKTVQAIA 212
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A + +LVVCP L +WA+E ++ +PF + I ++ G + T V
Sbjct: 213 VAHHYRGEWPVLVVCPMSLMENWAKEFNKFCGIPF---SRIAILQGAKAT---ATSLQDV 266
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
V++SY+ L K + + ++I+DESH+++ + + L + + +R +LLS
Sbjct: 267 VIVSYSSL----KCVEHAHFNVVILDESHYIKAGAA----KRAQHSLKLCRESRRAILLS 318
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP++SRP +++ Q+ + PG + ++ F YC+ + G+ D + +EL
Sbjct: 319 GTPAMSRPIELYAQLQAIQPGAV-PSRAQFGARYCN-----SFVGRFGIDLTGHAHADEL 372
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ LL+ +IRR K+ L +LP K RQ++ + + E + + + + S +
Sbjct: 373 HSLLRH-YLIRRTKRELGRELPSKSRQLLYIYITEKEKKALEKQIIALRHSLSSTSTAAA 431
Query: 474 PKDSDEHDDSGACCRLGKISYQELGI----AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
D+S C + E+ + AK+ ++++S G + ++
Sbjct: 432 NSAFSLVDNSAGDCAARAPNVFEMKMATARAKIPAVQDYVS---------GIVEQHLH-S 481
Query: 530 SNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K+I+FAHH +++ ++ + K I ++ I G+T P R+ A F+ +A
Sbjct: 482 GEKLILFAHHQCMMEALRSAVEAVQPLKPIDYIYISGDTPPAQREPAAEHFRTEATCTVA 541
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ + + G G +F+ A VVF EL +PS LQ EDR HR GQ I A+ T+D
Sbjct: 542 ILSMQSSGTGHNFTCASTVVFTELDWNPSTHLQCEDRVHRIGQAQPCRIKYLLAEGTSDS 601
Query: 646 SHWQNLNKSLRCVSS 660
W L L ++
Sbjct: 602 VIWPLLQAKLSVTTA 616
>gi|429962731|gb|ELA42275.1| hypothetical protein VICG_00675 [Vittaforma corneae ATCC 50505]
Length = 583
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 237/472 (50%), Gaps = 64/472 (13%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
L + D+++ FQ E V F + R GR L+AD+MGLGKT+QA+AIA + +L++ PA
Sbjct: 142 LQGGIYDILMAFQREAVNFAINRNGRILLADDMGLGKTIQALAIANYYKLEYPLLILSPA 201
Query: 253 ILRLSWAEELERWLP--FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
L +W + ++R+L C+ + FG R+ ++SY + +
Sbjct: 202 SLCYNWLDSVQRFLSEEACIIRE-KTDFG-----------CRIAIMSYNLAVNFIDVLNT 249
Query: 311 QDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ ++I DE H+++ SKRT K +L + K R++++SGTP+ SRP +++ I
Sbjct: 250 CKYGVIICDECHYLKSMNSKRT------KLLLPLLQKSSRLIMISGTPATSRPLELYPII 303
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L GL + + YCD G + F D+ EL+ ++++ MIRR+K
Sbjct: 304 CALDRGLYPSFQV-YGSRYCD-----GRKIGTFFDYRGCSNAVELSAVIEKAFMIRRVKD 357
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
++L QLP K R+ I L + SE + K K D D R
Sbjct: 358 NVLNQLPKKFRRQIFLDTRASESTTLK----------------KGELFGDNLD-----TR 396
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ + Y + I K RE PVI +G + + K I+FAHH ++LD ++
Sbjct: 397 IMQ-EYNQASIIK----RE-----PVIKYMEGIIEKKI-----KCIVFAHHKEMLDALES 441
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
F EK I ++RIDG T RQ+ V FQ ++IAI+ +TA GL +S + V+F E
Sbjct: 442 FCVEKQIKYIRIDGATQSTKRQNLVDMFQNDENIRIAILSLTACSTGLTLTSGKAVIFAE 501
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
L +P MLQAEDR HR GQ V+I+ AK+T DE W L K L + S
Sbjct: 502 LYWNPGTMLQAEDRVHRIGQCDNVDIHYLVAKNTIDEMVWPKLLKKLTVLES 553
>gi|440297958|gb|ELP90599.1| hypothetical protein EIN_020780 [Entamoeba invadens IP1]
Length = 816
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/513 (30%), Positives = 257/513 (50%), Gaps = 65/513 (12%)
Query: 166 HSIDTGRWNPCRPEHLSDEVVDEMIG---KLPKSLLDVILPFQLEGVRFGLRRGGRCLIA 222
H ID W + + DE D IG K+P+ + D++ FQ EGV+FGL++ G+ ++
Sbjct: 275 HKIDDWVWKIVK---MPDETGD--IGRFEKIPQKIRDMLYGFQTEGVKFGLKKCGKFMLG 329
Query: 223 DEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
D+MGLGKT+Q IAI + + +L+V P IL+L W +L C D+
Sbjct: 330 DDMGLGKTIQTIAILSAYPELRPVLIVVPNILKLQWRMQL------CDVLDVSDDDIAEY 383
Query: 283 NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVL 340
+P + V+ SY + + + ++ DE H ++ +KR ++ L
Sbjct: 384 DPHVMVPGTNFVITSYDSVAASNGELFSHPFKYVVCDECHLLKNQTTKRATQ------TL 437
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
++ KVK +V +SGTP+++RP ++F ++ L + F YC +T Y
Sbjct: 438 EICRKVKHVVFMSGTPAVNRPLELFPVLSCLLDTIHSVGMKRFGDRYCANQTYSKY---- 493
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
+D++ +ELN+LL++ VMIRRLK +L +L K R+ R+ L+ +
Sbjct: 494 -KDYTGSKYEKELNILLEK-VMIRRLKIDVLKELGKKERE--RVYLEEPD---------- 539
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
+ND+ D T +S+ ++ G L Y+ G+AK+ ++
Sbjct: 540 MNDTLCQMKKDMT--ESNWNEKKGPVFEL----YRSTGLAKMPSVCGYIET--------- 584
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
V + K++IFA+H+ V+ G+ +F+ +K I +VRIDG+T +R V F+ N
Sbjct: 585 -----VLEKEEKIVIFAYHVDVITGLTQFLIDKKINYVRIDGSTKADERGELVEKFK--N 637
Query: 581 E-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA-VNIYIFC 638
E ++A++ I G++FSSA +F EL P M+QAEDR HR GQ + V I
Sbjct: 638 EGCRVALLSIEVANCGVEFSSAAMCIFAELSFVPGKMIQAEDRIHRIGQKAKLVRIQYLI 697
Query: 639 AKDTTDESHWQNLNKSLRCVSSATNGKYDALQE 671
A++T DE+ WQ K + +GK DA+ E
Sbjct: 698 ARNTYDETLWQIFMKKTATLGKIVDGK-DAVLE 729
>gi|195437364|ref|XP_002066610.1| GK24475 [Drosophila willistoni]
gi|194162695|gb|EDW77596.1| GK24475 [Drosophila willistoni]
Length = 734
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 237/496 (47%), Gaps = 64/496 (12%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDV-----------------------ILPFQLEGVRFGLRR 215
+H+SD +IG +PK LLD+ ++PFQ EGV FG+ +
Sbjct: 189 KHVSDLKPHVIIGTIPKKLLDLCQQPPVDPEWSVLASLEPSLNEKLMPFQREGVCFGIAQ 248
Query: 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
GR +I DEMGLGKT QA+AIA F +L+ A R +WA + LP +H
Sbjct: 249 KGRLMICDEMGLGKTYQALAIADYFKDDWPLLICTTASTRDAWARYIGELLP---SVALH 305
Query: 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335
V NN ++ +V++ SY M+ R ++++ + +LI DESH ++ K
Sbjct: 306 YVQVLNNNQQYVGE-AKVLITSYNMMERHADKLMQRKFGVLIFDESHTLKSGKAKC---- 360
Query: 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+A + KR+VLLSGTP+LSRP ++F Q+ M+ + + +F YCD G
Sbjct: 361 TTVAKRLADQAKRVVLLSGTPALSRPLELFTQLQMIDGKFM--SFMEFTTRYCD-----G 413
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAK 455
Q D L+EL VLLK M+RR K +L +L K R+ + L
Sbjct: 414 KQTHFGWDAQGQSNLDELKVLLKLKYMVRRTKSEVLPELAEKNRETVIL----------D 463
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
A+ ND K + +D T + GK S +E+ + R + V
Sbjct: 464 PALVWTNDETKTSLSDFTKQLQTSK---------GK-SMEEILL------RFYARTAEVK 507
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
+ A + K IIFAHH +LD + + +S + ++RIDG+T R V +
Sbjct: 508 TRAVCAYLKTLIKEKIKFIIFAHHRIMLDAICDCLSTLKVHYIRIDGSTRSDLRADFVET 567
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
FQ + ++A++ + A G+ ++A+ ++F EL +PS + QAE RAHR GQT V
Sbjct: 568 FQKKSSCQVAVLSLKACNSGITLTAAEMIIFAELDWNPSTLAQAESRAHRIGQTKPVICR 627
Query: 636 IFCAKDTTDESHWQNL 651
A T D++ W L
Sbjct: 628 YLMAHQTADDTIWNML 643
>gi|125984352|ref|XP_001355940.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
gi|54644258|gb|EAL32999.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
Length = 747
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 236/498 (47%), Gaps = 50/498 (10%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGL 213
P VT+N + K +D R P E ++ + L D ++PFQ +GV F +
Sbjct: 201 PHVTINTIPK--KILDLCRQPPKTLER-------SVLASIEPKLADRLMPFQQDGVCFAI 251
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273
+ GR +I DEMGLGKT QA+A+A F +LV A R SWA + LP
Sbjct: 252 AQKGRIMICDEMGLGKTYQALAVADYFKEDWPLLVCTTASTRDSWAVHITELLP---KVP 308
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
+H + NN ++ +V++ SY M+ R + ++ + +I DESH ++ SK
Sbjct: 309 LHYIQVLNNNQQYVGD-AQVLITSYNMMERHIDKLYQRKYGFIIFDESHTLKNSKAKCT- 366
Query: 334 EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
K + D A R+VLLSGTP+LSRP ++F Q+ ++ L +F+ YCD
Sbjct: 367 AVAKRLTDQA---NRVVLLSGTPALSRPVELFTQLQLIDSKFLNFK--EFSTRYCD---- 417
Query: 394 QGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
G Q Q D + LEEL V+L MIRR K +L QL K R+ + L
Sbjct: 418 -GKQSQFGWDANGQSNLEELKVILTLKYMIRRTKSEVLPQLAEKNRETVVL--------- 467
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
D TND+T D + + GKI + L R +
Sbjct: 468 ---------DPSLIWTNDETKTTLDAMNKELRNSK-GKIMEEIL-------LRFYARTAE 510
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
V A + A + K I+FAHH ++D + + +S + +RIDG T R V
Sbjct: 511 VKARAVCAYLKSLVKEQKKFIVFAHHRVMMDAISDCLSALNVHHIRIDGQTRSDLRADMV 570
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+FQ + ++A++ + A G+ ++A+ +VF EL +PS + QAE RAHR GQT V
Sbjct: 571 SAFQNKSSCRVAVLSLKACNAGITLTAAELIVFAELDWNPSTLAQAESRAHRIGQTKTVI 630
Query: 634 IYIFCAKDTTDESHWQNL 651
A +T D++ W+ L
Sbjct: 631 CRYLLANETADDTIWKML 648
>gi|195161250|ref|XP_002021481.1| GL26533 [Drosophila persimilis]
gi|194103281|gb|EDW25324.1| GL26533 [Drosophila persimilis]
Length = 747
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 225/463 (48%), Gaps = 41/463 (8%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
++ + L D ++PFQ +GV F + + GR +I DEMGLGKT QA+A+A F +LV
Sbjct: 227 VLASIEPKLADRLMPFQQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKEDWPLLV 286
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
A R SWA + LP +H + NN ++ +V++ SY M+ R +
Sbjct: 287 CTTASTRDSWAVHITELLP---KVPLHYIQVLNNNQQYVGD-AQVLITSYNMMERHIDKL 342
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
++ + +I DESH ++ SK K + D A KR+VLLSGTP+LSRP ++F Q+
Sbjct: 343 YQRKYGFIIFDESHTLKNSKAKCT-AVAKRLTDQA---KRVVLLSGTPALSRPVELFTQL 398
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
++ L +F+ YCD G Q Q D + LEEL V+L MIRR K
Sbjct: 399 QLIDSKFLNFK--EFSTRYCD-----GKQSQFGWDANGQSNLEELKVILTLKYMIRRTKS 451
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QL K R+ + L D TND+T D + +
Sbjct: 452 EVLPQLAEKNRETVVL------------------DPSLIWTNDETKTTLDAMNKELRNSK 493
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
GKI + L R + V A + A + K I+FAHH ++D + +
Sbjct: 494 -GKIMEEIL-------LRFYARTAEVKARAVCAYLKSLVKEQKKFIVFAHHRVMMDAISD 545
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+S + +RIDG T R V +FQ + ++A++ + A G+ ++A+ +VF E
Sbjct: 546 CLSALNVHHIRIDGQTRSDLRADMVSAFQNKSSCRVAVLSLKACNAGITLTAAELIVFAE 605
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
L +PS + QAE RAHR GQT V A +T D++ W+ L
Sbjct: 606 LDWNPSTLAQAESRAHRIGQTKTVICRYLLANETADDTIWKML 648
>gi|339898362|ref|XP_001465890.2| putative DNA helicase [Leishmania infantum JPCM5]
gi|321399531|emb|CAM68321.2| putative DNA helicase [Leishmania infantum JPCM5]
Length = 1102
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 173/652 (26%), Positives = 306/652 (46%), Gaps = 82/652 (12%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH 180
+ G+A +Y + Y ++ LK + + E IP VE++ P
Sbjct: 106 TAGRAFLYPMAQYTRLVAALKARSLPHVAFEEIPSFYFRCVERMRQ----------LPRQ 155
Query: 181 LSDEVVDEMIGK--LPKS---LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
+D+V G+ LP + + + PFQ EGVRF L R GR +IAD+MGLGKT+QAIA
Sbjct: 156 YADDVA---AGRACLPDAEDCVYRRLKPFQREGVRFVLERHGRAMIADDMGLGKTVQAIA 212
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A + +LVVCP L +WA+E ++ +PF A I ++ G + T V
Sbjct: 213 VAHHYRDEWPVLVVCPMSLMENWAKEFNKFCGIPF---ARIAILQGAKAT---ATSLQAV 266
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++SY+ L K + + + ++I+DESH+++ + + L + +R++LLS
Sbjct: 267 AIVSYSSL----KCVEDAHFNVVILDESHYIKAGAA----KRAQQSLKLCRASRRVILLS 318
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP++SRP +++ Q+ + P L+ +K F YC+ + G+ D + +EL
Sbjct: 319 GTPAMSRPIELYAQLQAIQPSLV-PSKAQFGARYCN-----SFVGRFGIDMTGHAHPDEL 372
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ LL+ +IRR K+ L +LP K RQ++ + + E + + + + S + +
Sbjct: 373 HSLLRH-FLIRRTKRELGSELPSKSRQLLYMYITEKEKKALEKQIIALRRSLSSTSAAAS 431
Query: 474 PKDSDEHDDSG--ACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
S D+ G + R + ++ AK+ ++++S G + ++
Sbjct: 432 SSTSSLVDNGGGDSAARAPNVFEMKMATARAKIPAVQDYVS---------GIVEQHLD-S 481
Query: 530 SNKMIIFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K+I+FAHH +++ ++ + + I ++ I G+T P R+ A F+ +A
Sbjct: 482 GEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISGDTPPAQREPAAEHFRTEATCTVA 541
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ + + G+G +F+ A VVF EL +PS LQ EDR HR GQ +I A+ T+D
Sbjct: 542 ILSMQSSGIGHNFTCASTVVFTELDWNPSTHLQCEDRVHRIGQAQPCHIKYLLAEGTSDS 601
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASS---- 701
W L L S T ++ E V + +DK + D+ +S+
Sbjct: 602 VIWPLLQTKL----SVTAAMFETSNVTGAE-VRLHDGADKQNVARRDVVAATTSSTPSAS 656
Query: 702 -----DQFQELMKVPESSEASDFRAINTNDEITAKMND---KLLEESKTDHS 745
DQF + P+ S+A+ R + + + + +S T H+
Sbjct: 657 QQSTLDQFMQ----PQPSQAASRRGEEVDGAVVSMQESPRVSVHSQSSTGHA 704
>gi|30044094|ref|NP_835691.1| similar to DNA helicase [Rhodothermus phage RM378]
Length = 670
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 244/480 (50%), Gaps = 46/480 (9%)
Query: 202 LPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258
PFQ GV F + LIADEMG GKT+Q+ + ++ +LVVCPA L+ +W
Sbjct: 106 FPFQKAGVHFVTEVFKEYPGALIADEMGTGKTIQSAGVINV-MNPDRVLVVCPASLKYNW 164
Query: 259 AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA--LL 316
EL+RW+ +I +V G N V + + +I+Y +LHR+ E+D+A L+
Sbjct: 165 ERELKRWV--VHEKEIIVVNG---NEVDFSLKNTIYIINYDILHRIS----EEDYAYDLV 215
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVK-RIVLLSGTPSLSRPYDIFHQINMLWPGL 375
IVDE H+++ K T VK+++ + + +++ L+GTP ++RP +++ + M P +
Sbjct: 216 IVDECHYIKNPK-TKRSGFVKSIVKSSIEQGGKVLFLTGTPIVNRPIELYPILEMAAPKV 274
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
G + +AK YC+ Y DF LEEL L+ T+MIRRLK+ +L +LP
Sbjct: 275 FGNF-WGYAKRYCN-----AYYNGYGWDFRGASNLEELQGKLRSTIMIRRLKKDVLKELP 328
Query: 436 PKRRQIIRLLLKR-----------SEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
PK R+I+ + L + ++ + K + V+ + E+ ++ D
Sbjct: 329 PKSRKIVPVKLNKMFAEEEIFKLAEDLQNLKNYISVLREFERVGVESADLAEAMAEFDEK 388
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
K+ ++ +++ R + +IH +D + + +++FAHH V +
Sbjct: 389 M-----KVMFE-----RVAEMRRFYAIHKAPFAADYIVSLVKEEEVDGLVVFAHHHDVFE 438
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+Q+ + KGI + RI G RQ AV FQ S +V + + I A GVG+ + A+
Sbjct: 439 IIQKVLEAKGITYARITGEENVVQRQKAVEDFQ-SGKVDVVLCSILAAGVGITLTRAKTA 497
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSA-VNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VF+EL P +LQAEDR HR GQ + V+I+ A+ T DE+ L + + + A N
Sbjct: 498 VFVELDWVPGNILQAEDRLHRIGQEAECVDIHYIVARHTLDENFADYLTRKIEIIEKALN 557
>gi|414887796|tpg|DAA63810.1| TPA: hypothetical protein ZEAMMB73_058078 [Zea mays]
Length = 657
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 236/494 (47%), Gaps = 95/494 (19%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P L ++PFQ EG+RF L+ GGR LIADEMGLGKTLQAIA+A+C A +L +
Sbjct: 207 RIPPHLESKLMPFQREGIRFVLQHGGRALIADEMGLGKTLQAIAVASCLRDAWPVLAIQ- 265
Query: 252 AILRLSW----AEELERWLPFC---LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
SW E++ LP A + + + HL VISY ++ ++
Sbjct: 266 -----SWLNIPVEDILVVLPHTGGSHKAGFRVAYSNSKGDFHLDGV--FNVISYDVVPKI 318
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP+LSRP ++
Sbjct: 319 QSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTPALSRPIEL 374
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F QI L+P + K+ ++ YC +G F + EEL+ L+K TVMIR
Sbjct: 375 FTQIQALYPTVY-KSVSEYGNIYC--------KGGFFGLYQGASNHEELHNLMKATVMIR 425
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK+ +L QLP KRRQ + L L ++ + +A +T K E DS
Sbjct: 426 RLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKVKIESSDSK 475
Query: 485 ACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+ +YQ + +AK+ ++L +I E K +IF
Sbjct: 476 EMIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLGT--MIEEG------------CKFLIF 521
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
AHH ++D +++ + ++ I AGG G+
Sbjct: 522 AHHQPMIDAIEKHL-----------------------------------LLSIKAGGYGI 546
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
++A V+F EL +P ++QAEDRAHR GQ S+VN+Y + T D+ W + L
Sbjct: 547 TLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNVYYLLSNGTIDDLMWDVVQGKLE 606
Query: 657 CVSSATNGKYDALQ 670
+ +G+ L+
Sbjct: 607 NLGQMLDGQEKTLE 620
>gi|157865532|ref|XP_001681473.1| putative SNF2/RAD54 related DNA helicase [Leishmania major strain
Friedlin]
gi|68124770|emb|CAJ02339.1| putative SNF2/RAD54 related DNA helicase [Leishmania major strain
Friedlin]
Length = 958
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 230/456 (50%), Gaps = 53/456 (11%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
LS V + + ++P L + Q+EGVR LR GGR L AD+MG+GKT+QA+A A
Sbjct: 163 LSSAVPETRLDRIPHLLRRTMKAHQVEGVRTALRWGGRILFADDMGVGKTMQALATVAA- 221
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYT 299
+ A +L VCP+ L+L WA+ +E++L + + IH + G N+ + P+VV++SY
Sbjct: 222 LEAYPLLTVCPSALKLMWADLIEQYLHEQVSVEEIHPIHG-ANDALSSDSQPKVVLVSYH 280
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M L K + + W L+ DESH + + ++ + V+ + + +LLSGTP+
Sbjct: 281 MAAVLEKQLQSRSWKCLLCDESHLLHTNVSGADATYTRVVVAIGKRTPYCLLLSGTPATD 340
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
P+D+++QI+ML P LLG ++++FA YC + T Y + R E LL+
Sbjct: 341 NPFDLYNQIDMLRPNLLGGSRFEFAMRYCQL-TFSPY-----LQVGESTRRVEFLSLLRS 394
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RRLK+ +L +LP K R ++R+ + S
Sbjct: 395 CCMLRRLKEDVL-ELPRKSRVVMRVAHRLS-----------------------------P 424
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
H D+ R G+ YQE W + IAE A + +++++ AHH
Sbjct: 425 HSDAR---RSGEAPYQE------RYANSWKANWNGIAE----AVEHCCSKYDRVVLLAHH 471
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
++++D + ++ V IDG + R +H+F E IA+IGITA VG+ +
Sbjct: 472 IELIDSLVQWARGHCKRAVCIDGRVPVQQRGDLLHAFH-RGEAGIAVIGITACAVGISLA 530
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
AQ VF ELP + M QAEDR HR GQ V +Y
Sbjct: 531 PAQCAVFCELPPDAAWMRQAEDRLHRPGQREEVVVY 566
>gi|342185651|emb|CCC95136.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 936
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 241/485 (49%), Gaps = 61/485 (12%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +GV F +RRGGR +IAD+MGLGKT+QAIA+A + + +L+VCP L +W+ EL
Sbjct: 182 FQKKGVDFIIRRGGRGMIADDMGLGKTVQAIAVAHHYRNEWPLLIVCPLSLVENWSRELT 241
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
R FCL + H V + + ++ YT L L S + + + ++I+DESH
Sbjct: 242 R---FCLIPPSRMALAHTQKFV-MRDCHSIAIVPYTALRVL--SDVPKTFNVVILDESHF 295
Query: 324 VRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
+ +++ + A L V KR++LLSGTP++SRP ++F Q+ + K F
Sbjct: 296 I----KSTTAQRTIATLKVCKNAKRVLLLSGTPAISRPIELFSQLQAIVEPSYMPTKTQF 351
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR 443
+ YC+ + G+ D + + EL+ LL+Q MIRR K L LP K RQ+
Sbjct: 352 SARYCN-----AFVGRFGLDDTGHSNMSELHALLQQ-YMIRRTKSELGRDLPLKNRQLFY 405
Query: 444 LLLKRSEIVSAKAAVGVINDSEKD---------------ATNDKTPKDSD----EHDDSG 484
L ++ E + + V + S KD ++P + +DS
Sbjct: 406 LYIEPKERKALEGCVNTLRQSIKDGLVLPGLTGPSAQVSGCGTQSPSAVEPAAAAANDST 465
Query: 485 ACCRLGKISYQELGI---------AKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMI 534
C L IS + L + AKL+ +E++ + I ES S K+I
Sbjct: 466 NKCSL-PISGRSLTLLEMRHATSKAKLTAVQEFVRTTCEQIVES-----------SEKVI 513
Query: 535 IFAHHLKVLDGVQEFI----SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
FAHHL ++DG+ + I S + +VRI G+T R+ ++ F+ +++ IA++ +
Sbjct: 514 FFAHHLVMIDGIAKAIESVKSRGPLDYVRIVGDTPAVQREKLLNHFRTADKCHIALLSMQ 573
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
GVG + + A VVF EL +PS LQ EDR HR GQ+S I A+ T+D W
Sbjct: 574 TCGVGHNLTCATMVVFAELDWNPSTHLQCEDRVHRIGQSSPCFIKYLLAEGTSDSVIWPL 633
Query: 651 LNKSL 655
L L
Sbjct: 634 LQNKL 638
>gi|412985555|emb|CCO19001.1| predicted protein [Bathycoccus prasinos]
Length = 698
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 150/521 (28%), Positives = 247/521 (47%), Gaps = 85/521 (16%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
+ D++VD +P D + PFQ EGV+F L+R GR +I DEMGLGK++QA+ ++ +
Sbjct: 192 IHDKMVDNQFNSIP--FKDKLFPFQSEGVKFVLKRDGRAMIGDEMGLGKSIQALGVSKVY 249
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCL--------PADIHLVFGHRNNPVHLTRFPR 292
++ CP+ L+ +W E+E+WL + + + + L +
Sbjct: 250 SKDWPCVIFCPSSLKDTWKHEIEKWLGGVDGDDGKGECAVKVRKIESAKESKDILNEMRK 309
Query: 293 -------------VVVISYTMLHRLRKSMIEQDWALL-----IVDESHHV--RCSKRTSE 332
+++ Y++ ++++K + E + ++ + DESH + R +KRT
Sbjct: 310 NSNGSGSASTKIDFIIVPYSICNQIQKELFELVFNVMKANVVVCDESHFLKDRKAKRTM- 368
Query: 333 PEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
AV+ + KR + L+GTP+L++P ++F Q+ L P + K ++ + YC
Sbjct: 369 -----AVVPFLIRAKRAICLTGTPALAKPIELFSQLTSLRPDIFPKLS-EYGQRYCS--- 419
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-- 450
G F FS +EL ++ +VMIRR K+ +L QLPPK+R+ I L + ++E
Sbjct: 420 -----GGRFGAFSGSSESQELFAVVSSSVMIRRKKKDVLTQLPPKQREQIFLEIPKAERT 474
Query: 451 -----IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
IV A A+ E+ +K Y AK+
Sbjct: 475 SKIQPIVQAMNALPETETLERKMLMNKY--------------------YLSTAEAKVKTV 514
Query: 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
+ +L ++ D K++ FAHH +L E + + F+RIDG T
Sbjct: 515 QNYL--QNLLESVD---------EEKKILFFAHHKCLLHAAVETMEKTKTKFIRIDGETP 563
Query: 566 PRDRQSAVHSFQL--SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
RQ V SFQ +N K+A++ I A GVGL + A VVF E +P+ +LQAEDRA
Sbjct: 564 SGLRQGLVDSFQRCDANSPKVAVLSIKAAGVGLTLTRASLVVFSEYSWTPAEILQAEDRA 623
Query: 624 HRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
HR GQ +V + AKD+ D+ WQ++ L + +G
Sbjct: 624 HRIGQRDSVLVQFLHAKDSVDDIIWQSVQNKLETLGHFLDG 664
>gi|308080139|ref|NP_001183352.1| uncharacterized protein LOC100501760 [Zea mays]
gi|238010938|gb|ACR36504.1| unknown [Zea mays]
Length = 631
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 219/419 (52%), Gaps = 63/419 (15%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P L ++PFQ EG+RF L+ GGR LIADEMGLGKTLQAIA+A+C A +LV+ P
Sbjct: 207 RIPPHLESKLMPFQREGIRFVLQHGGRALIADEMGLGKTLQAIAVASCLRDAWPVLVISP 266
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV---------------VI 296
+ LRL WA ++ WL + DI +V H H F RV VI
Sbjct: 267 SSLRLHWASAIQSWLNIPV-EDILVVLPHTGGS-HKAGF-RVAYSNSKGDFHLDGVFNVI 323
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ +++ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP
Sbjct: 324 SYDVVPKIQSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTP 379
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F QI L+P + K+ ++ YC +G F + EEL+ L
Sbjct: 380 ALSRPIELFTQIQALYPTVY-KSVSEYGNIYC--------KGGFFGLYQGASNHEELHNL 430
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+K TVMIRRLK+ +L QLP KRRQ + L L ++ + +A +T K
Sbjct: 431 MKATVMIRRLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKV 480
Query: 477 SDEHDDSGACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
E DS + +YQ + +AK+ ++L +I E
Sbjct: 481 KIESSDSKEMIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLGT--MIEEG---------- 528
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K +IFAHH ++D +++ + +K + ++IDG T RQ+ V FQ +++VK A++
Sbjct: 529 --CKFLIFAHHQPMIDAIEKHLLKKKVKCIKIDGKTPLTTRQTLVTDFQNNDDVKAAVM 585
>gi|261334482|emb|CBH17476.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
DAL972]
Length = 967
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 178/609 (29%), Positives = 287/609 (47%), Gaps = 67/609 (11%)
Query: 127 ACVYKLRDYNPVLTCLK--NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDE 184
A VY + Y ++ L+ +S ++VE IP + V+ ++ EH
Sbjct: 112 AYVYPIESYERLILALRKFSSHQLQVEKIPPFFFSCVQAAKDNVL---------EHEKQV 162
Query: 185 VVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
V+ G P ++ L PFQ GV F + RGGR +IAD+MGLGKT+QAIA A + +
Sbjct: 163 KVNLSQGPDPDDVVYSQLHPFQKRGVGFVIARGGRGMIADDMGLGKTVQAIAFAHHYRNE 222
Query: 244 GSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+L++CP L +W +E+ R+ +P A H R + VH +V++ Y+ L
Sbjct: 223 WPLLIICPLSLVDNWEKEIIRFCSIPVGRIATAHTTKRFRIDGVH-----SIVIVPYSSL 277
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
L + + ++IVDESH+++ + + A L + KR++LLSGTP++SRP
Sbjct: 278 KCLEG--VSVTFKVVIVDESHYIK----SGTAQRTTATLKLCRAAKRVLLLSGTPAMSRP 331
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ Q+ +K F YC+ +QG+ D + + EL+ L+ Q
Sbjct: 332 VELYSQLQAFVNPSCMPSKTQFCARYCN-----SFQGRFGVDCTGHSNISELHALI-QHF 385
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA------TNDKTPK 475
++RR K L +LP K R ++ L + E + + + + + ++ T+ TP
Sbjct: 386 VVRRTKSELANELPSKSRHLLYLYITPKEKAALEKDITKLRECLRNGLALPGLTDPLTPS 445
Query: 476 D--SDEHDDSGACCRLGKISY----QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
SD H G G S ++L I +L V G A+ V
Sbjct: 446 AFASDPHGTPG-----GPPSQYSAGKQLNILELRTATARAKTTAVQDYIRGVAEQLVE-T 499
Query: 530 SNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
+ KMI+FAHH +LDG+++ I K + ++ I GNT R+ ++ F+ S +A
Sbjct: 500 NEKMIVFAHHRVMLDGIRDAIESVNPRKPLDYILICGNTAAAQREELLNHFRTSPTCHLA 559
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + GVGL+ + A VVF EL +P LQ EDR HR GQ+S+ I A+ T+D
Sbjct: 560 VLSMLVCGVGLNLTCATMVVFTELDWNPCTHLQCEDRVHRIGQSSSCFIKYLLAEGTSDT 619
Query: 646 SHWQNLNKSLR---------CVSSATNGKYDAL--QEIAVEGV--SYLEMSDKTDRGSED 692
W L L ++ NG+ D L + VE V S L + +G +
Sbjct: 620 IIWPLLQNKLSVTKALLEDGAAANGVNGRSDGLVSKNTNVESVRRSDLSTTPPLPKGRQ- 678
Query: 693 LTLDQVASS 701
LTL + SS
Sbjct: 679 LTLGECKSS 687
>gi|342185649|emb|CCC95134.1| putative SNF2 DNA repair protein [Trypanosoma congolense IL3000]
Length = 936
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 241/485 (49%), Gaps = 61/485 (12%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +GV F ++RGGR +IAD+MGLGKT+QAIA+A + + +L+VCP L +W+ EL
Sbjct: 182 FQKKGVDFIIQRGGRGMIADDMGLGKTVQAIAVAHHYRNEWPLLIVCPLSLVENWSRELT 241
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
R FCL + H V + + ++ YT L L S + + + ++I+DESH
Sbjct: 242 R---FCLIPPSRMALAHTQKFV-MRDCHSIAIVPYTSLRVL--SDVPKTFNVVILDESHF 295
Query: 324 VRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
+ +++ + A L V KR++LLSGTP++SRP ++F Q+ + K F
Sbjct: 296 I----KSTTAQRTIATLKVCKNAKRVLLLSGTPAISRPIELFSQLQAIVEPSYMPTKTQF 351
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR 443
+ YC+ + G+ D + + EL+ LL+Q MIRR K L LP K RQ+
Sbjct: 352 SARYCN-----AFVGRFGLDDTGHSNMSELHALLQQ-YMIRRTKSELGRDLPLKNRQLFY 405
Query: 444 LLLKRSEIVSAKAAVGVINDSEKD---------------ATNDKTPKDSD----EHDDSG 484
L ++ E + + V + S KD ++P + +DS
Sbjct: 406 LYIEPKERKALEGCVNTLRQSIKDGLVLPGLTGPSAQVSGCGTQSPSAVEPAAAAANDST 465
Query: 485 ACCRLGKISYQELGI---------AKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMI 534
C L IS + L + AKL+ +E++ + I ES S K+I
Sbjct: 466 NKCSL-PISGRSLTLLEMRHATSKAKLTAVQEFVRTTCEQIVES-----------SEKVI 513
Query: 535 IFAHHLKVLDGVQEFI----SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
FAHHL ++DG+ + I S + +VRI G+T R+ ++ F+ +++ IA++ +
Sbjct: 514 FFAHHLVMIDGIAKAIESVKSRGPLDYVRIVGDTPAVQREKLLNHFRTADKCHIALLSMQ 573
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
GVG + + A VVF EL +PS LQ EDR HR GQ+S I A+ T+D W
Sbjct: 574 TCGVGHNLTCATMVVFAELDWNPSTHLQCEDRVHRIGQSSPCFIKYLLAEGTSDSVIWPL 633
Query: 651 LNKSL 655
L L
Sbjct: 634 LQNKL 638
>gi|71755373|ref|XP_828601.1| SNF2 DNA repair protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833987|gb|EAN79489.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 968
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 178/609 (29%), Positives = 287/609 (47%), Gaps = 67/609 (11%)
Query: 127 ACVYKLRDYNPVLTCLK--NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDE 184
A VY + Y ++ L+ +S ++VE IP + V+ ++ EH
Sbjct: 112 AYVYPIESYERLILALRKFSSHQLQVEKIPPFFFSCVQAAKDNVL---------EHEKQV 162
Query: 185 VVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA 243
V+ G P ++ L PFQ GV F + RGGR +IAD+MGLGKT+QAIA A + +
Sbjct: 163 KVNLSQGPDPDDVVYSQLHPFQKRGVGFVIARGGRGMIADDMGLGKTVQAIAFAHHYRNE 222
Query: 244 GSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+L++CP L +W +E+ R+ +P A H R + VH +V++ Y+ L
Sbjct: 223 WPLLIICPLSLVDNWEKEIIRFCSIPVGRIATAHTTKRFRIDGVH-----SIVIVPYSSL 277
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
L + + ++IVDESH+++ + + A L + KR++LLSGTP++SRP
Sbjct: 278 KCLEG--VSVTFKVVIVDESHYIK----SGTAQRTTATLKLCRAAKRVLLLSGTPAMSRP 331
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ Q+ +K F YC+ +QG+ D + + EL+ L+ Q
Sbjct: 332 VELYSQLQAFVNPSCMPSKTQFCARYCN-----SFQGRFGVDCTGHSNISELHALI-QHF 385
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA------TNDKTPK 475
++RR K L +LP K R ++ L + E + + + + + ++ T+ TP
Sbjct: 386 VVRRTKSELANELPSKSRHLLYLYITPKEKAALEKDITKLRECLRNGLALPGLTDPLTPS 445
Query: 476 D--SDEHDDSGACCRLGKISY----QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
SD H G G S ++L I +L V G A+ V
Sbjct: 446 AFASDPHGTPG-----GPPSQYSAGKQLNILELRTATARAKTTAVQDYIRGVAEQLVE-T 499
Query: 530 SNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
+ KMI+FAHH +LDG+++ I K + ++ I GNT R+ ++ F+ S +A
Sbjct: 500 NEKMIVFAHHRVMLDGIRDAIESVNPRKPLDYILICGNTAAAQREELLNHFRTSPTCHLA 559
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + GVGL+ + A VVF EL +P LQ EDR HR GQ+S+ I A+ T+D
Sbjct: 560 VLSMLVCGVGLNLTCATMVVFTELDWNPCTHLQCEDRVHRIGQSSSCFIKYLLAEGTSDT 619
Query: 646 SHWQNLNKSLR---------CVSSATNGKYDAL--QEIAVEGV--SYLEMSDKTDRGSED 692
W L L ++ NG+ D L + VE V S L + +G +
Sbjct: 620 IIWPLLQNKLSVTKALLEDGAAANGVNGRSDGLVSKNTNVESVRRSDLSTTPPLPKGRQ- 678
Query: 693 LTLDQVASS 701
LTL + SS
Sbjct: 679 LTLGECKSS 687
>gi|398015927|ref|XP_003861152.1| DNA helicase, putative [Leishmania donovani]
gi|322499377|emb|CBZ34450.1| DNA helicase, putative [Leishmania donovani]
Length = 1102
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 174/653 (26%), Positives = 307/653 (47%), Gaps = 84/653 (12%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH 180
+ G+A +Y + Y ++ LK + + E IP VE++ P
Sbjct: 106 TAGRAFLYPMAQYTRLVAALKARSLPHVAFEEIPSFYFRCVERMRQ----------LPRQ 155
Query: 181 LSDEVVDEMIGK--LPKS---LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
+D+V G+ LP + + + PFQ +GVRF L R GR +IAD+MGLGKT+QAIA
Sbjct: 156 YADDVA---AGRACLPDAEDCVYRRLKPFQRDGVRFVLERHGRAMIADDMGLGKTVQAIA 212
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A + +LVVCP L +WA+E ++ +PF A I ++ G + T V
Sbjct: 213 VAHHYRDEWPVLVVCPMSLMENWAKEFNKFCGIPF---ARIAILQGAKAT---ATSLQAV 266
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++SY+ L K + + + ++I+DESH+++ + + L + +R++LLS
Sbjct: 267 AIVSYSSL----KCVEDAHFNVVILDESHYIKAGAA----KRAQQSLKLCRASRRVILLS 318
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP++SRP +++ Q+ + P L+ +K F YC+ + G+ D + +EL
Sbjct: 319 GTPAMSRPIELYAQLQAIQPSLV-PSKAQFGARYCN-----SFVGRFGIDMTGHAHPDEL 372
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ LL+ +IRR K+ L +LP K RQ++ + + E + + + + S + +
Sbjct: 373 HSLLRH-FLIRRTKRELGSELPSKSRQLLYMYITEKEKKALEKQIIALRRSLSSTSAAAS 431
Query: 474 PKDSDEHDDSG--ACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
S D+ G + R + ++ AK+ ++++S G + ++
Sbjct: 432 SSTSSLVDNGGGDSAARAPNVFEMKMATARAKIPAVQDYVS---------GIVEQHLD-S 481
Query: 530 SNKMIIFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K+I+FAHH +++ ++ + + I ++ I G+T P R+ A F+ +A
Sbjct: 482 GEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISGDTPPAQREPAAEHFRTEATCTVA 541
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ + + G+G +F+ A VVF EL +PS LQ EDR HR GQ +I A+ T+D
Sbjct: 542 ILSMQSSGIGHNFTCASTVVFTELDWNPSTHLQCEDRVHRIGQAQPCHIKYLLAEGTSDS 601
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASS---- 701
W L L S T ++ E V + +DK + D+ +S+
Sbjct: 602 VIWPLLQTKL----SVTAAMFETSNVTGAE-VRLHDGADKQNVVRRDVVAATTSSTPSAS 656
Query: 702 -----DQFQELMKVPESSEASDFRAINTNDEITAKMND----KLLEESKTDHS 745
DQF + P+ S+A+ R D + M + + +S T H+
Sbjct: 657 QQSTLDQFMQ----PQPSQAASRRGEEV-DGVVVSMQESPRVSVHSQSSTGHA 704
>gi|118400670|ref|XP_001032657.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89287000|gb|EAR84994.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 1326
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 134/467 (28%), Positives = 237/467 (50%), Gaps = 57/467 (12%)
Query: 226 GLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLP-FCLPADIHLVFGHRNNP 284
G+GKTLQA+ IA + +L++CP+ LR + +E+ W + P+ I +V +
Sbjct: 18 GVGKTLQALCIAYIYKDQWPLLIICPSCLRFTIKQEIVNWFSEYIDPSLIQVVSKGSD-- 75
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDV 342
L + +V+IS+ +++ L + + + + I+DE+H+++ S+R+ K ++ +
Sbjct: 76 -QLLKKAEIVIISFDVVNNLSEVIQIKKFQTCIIDEAHYLKSLDSQRS------KTIVPL 128
Query: 343 AAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK--------TVQ 394
++K ++LL+GTP+LSRP ++F+ + ++ P + K FA YC+ +
Sbjct: 129 VERMKNVILLTGTPALSRPKELFNILKIIRPDIFNDFKI-FAYRYCNPRLNKIVNCINYD 187
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
G +L ELN +L + +MIRRLK+ +L LP KRR+ I + + +
Sbjct: 188 GCDNEL-----------ELNFILSERIMIRRLKEQILPDLPSKRRKKILIEIPQGSKNKI 236
Query: 455 KAAVGVINDS----------EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
AV N+ E +D+ +E ++ R YQE G+AKL
Sbjct: 237 NKAVKTANEKLFQIYLAKQMESQYLDDEFQNLKEEQENQDQMKRTFNFVYQETGLAKLDA 296
Query: 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS-EKGIGFVRIDGN 563
+E+L D+ K+IIFAHH +VLD +++ + + ++RIDGN
Sbjct: 297 VKEYLE--------------DLMDSQVKLIIFAHHQQVLDRIEKMVKCDFRRQYIRIDGN 342
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
+R V+ FQ + + +AI+ + A G+ +++ +V+F EL +P++MLQAEDR+
Sbjct: 343 VKQEERVDLVNQFQNNTKTTVAILSLQAASHGITLTASSHVIFAELYPTPAVMLQAEDRS 402
Query: 624 HRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
HR Q + V + KDT DE + L + + SS +G+ LQ
Sbjct: 403 HRINQNNNVLCHYLIGKDTVDEDIFNLLMQKYKVTSSILDGQRKDLQ 449
>gi|195401136|ref|XP_002059170.1| GJ16178 [Drosophila virilis]
gi|194156044|gb|EDW71228.1| GJ16178 [Drosophila virilis]
Length = 714
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 256/548 (46%), Gaps = 55/548 (10%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
++ + SL ++PFQ EGV F + + GR +I DEMGLGKT QA+A+A F +L+
Sbjct: 211 VLASIDPSLAQKLMPFQEEGVCFAIAQQGRVMICDEMGLGKTYQALAVADYFKDDWPLLI 270
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
A R +WA + LP +H + NN V+LT ++++ SY M+ R +
Sbjct: 271 CTTASTRDAWAMHITELLP---SVSVHCIQVLTNNQVYLTD-AKILITSYNMMERYMDKL 326
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD-VAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+++ + +I DESH ++ K + AV +A + +R++LLSGTP+LSRP ++F Q
Sbjct: 327 LQRKFGFVIYDESHTLKNGK-----AKCTAVAKRLADQARRVILLSGTPALSRPLELFTQ 381
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ ++ + +F YCD G Q D + LEEL V+L M+RR K
Sbjct: 382 LQLVDSRFMN--FMEFTSRYCD-----GKQTHFGWDANGQSNLEELRVILMLKYMLRRTK 434
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L Q+ K R+ + L A+ ND K H+ +
Sbjct: 435 AEVLPQMAEKNRETVVL----------DPALVWSNDDAKTTC----------HELNSELQ 474
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ S +EL + R + V + A + K IIFAHH ++D +
Sbjct: 475 KAKGKSREELLL------RFYARTAEVKTRAVCAYLKSLVKEPIKFIIFAHHRVMMDAIS 528
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ ++E I F+RIDG T R + V +FQ + K A++ + + G+ ++A+ +VF
Sbjct: 529 DCLNELRISFIRIDGQTRSDLRAAYVDTFQKKSSCKAAVLSLKSCNAGITLTAAEMIVFA 588
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL +PS + QAE RAHR GQT V A T D++ W L K +
Sbjct: 589 ELDWNPSTLAQAESRAHRIGQTKPVVCRYLMANQTADDTIWNML-----------RNKQE 637
Query: 668 ALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDE 727
L ++ V + L+ + T + +++ S + Q P + + ++T +
Sbjct: 638 VLSKVGVFAEN-LQHATHTAAPTTSRKIEEFFSPGKEQHFAPAPAPASVKEQHIVDTAKD 696
Query: 728 ITAKMNDK 735
I A N++
Sbjct: 697 IAAFFNEE 704
>gi|157870051|ref|XP_001683576.1| putative DNA helicase [Leishmania major strain Friedlin]
gi|68126642|emb|CAJ04339.1| putative DNA helicase [Leishmania major strain Friedlin]
Length = 1029
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 169/620 (27%), Positives = 294/620 (47%), Gaps = 79/620 (12%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH 180
+ G+A +Y + Y ++T L+ + + E IP VE++ P
Sbjct: 106 TAGRAFLYPMAQYTRLVTALRACSLPHVAFEEIPSFYFRCVERMRQ----------LPRQ 155
Query: 181 LSDEVVDEMIGK--LPKS---LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
+D+V G+ LP + + + PFQ +GVRF L R GR +IAD+MGLGKT+QAIA
Sbjct: 156 YADDVA---AGRACLPDAEDCVYRRLKPFQRDGVRFVLERHGRAMIADDMGLGKTVQAIA 212
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A + +LVVCP L +WA+E ++ +PF A I ++ G + T V
Sbjct: 213 VAHHYRDEWPVLVVCPMSLMENWAKEFNKFCGIPF---ARIAILQGAKAT---ATSLQAV 266
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++SY+ L K + + ++I+DESH+++ + + L + +R++LLS
Sbjct: 267 AIVSYSSL----KCVENAHFNVVILDESHYIKAGAA----KRAQQSLKLCRASRRVILLS 318
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP++SRP +++ Q+ + P L+ +K F YC+ + G+ D + +EL
Sbjct: 319 GTPAMSRPIELYAQLQAIQPSLV-PSKAQFGARYCN-----SFVGRFGIDMTGHAHPDEL 372
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ LL+ +IRR K L +LP K RQ++ + + E + + + + S + T
Sbjct: 373 HSLLRH-FLIRRTKHELGSELPSKSRQLLYMYITEKEKKALEKQIIALRRSLSSTSAAAT 431
Query: 474 PKDSDEHDDSGA--CCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
S D+ G R + ++ AK+ ++++S G + ++
Sbjct: 432 SSTSSLVDNGGGDWAARAPNVFEMKMATARAKIPAVQDYVS---------GIVEQHLD-S 481
Query: 530 SNKMIIFAHHLKVLDGVQEFI----SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
K+I+FAHH +++ ++ + + I ++ I G+T P R+ A F+ +A
Sbjct: 482 GEKLILFAHHQCMMEALRSAVEAVRPRQPIDYIYISGDTPPAQREPAAEHFRTEATCTVA 541
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ + + G+G +F+ A VVF EL +PS LQ EDR HR GQ +I A+ T+D
Sbjct: 542 ILSMQSSGIGHNFTCASTVVFTELDWNPSTHLQCEDRVHRIGQAQPCHIKYLLAEGTSDS 601
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDL---------TLD 696
W L L S T ++ + E V + +DK D+ +
Sbjct: 602 VIWPLLQTKL----SVTAAMFETSKMTGAE-VRLHDGADKQKVARRDVVAATTLSTPSAS 656
Query: 697 QVASSDQFQELMKVPESSEA 716
Q ++ DQF + P+ S+A
Sbjct: 657 QQSTLDQFMQ----PQPSQA 672
>gi|407860316|gb|EKG07335.1| DNA helicase, putative [Trypanosoma cruzi]
Length = 942
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 186/651 (28%), Positives = 306/651 (47%), Gaps = 92/651 (14%)
Query: 41 LSKCRKFSTEPTHFP--KSALADPNSTTQLPENFRVRLE-ICSPD------SFSVTPLAI 91
+SKCR F+ P H + +A P + E VR E + P+ + +V+P +
Sbjct: 53 MSKCRFFALCPLHADGWRRVVAPPAVAS---EFIAVRFEAVLHPEKKTPHVAATVSPPEV 109
Query: 92 EGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNS-AGIEV 150
E + E+ + P Y KA +Y + Y+ +L L+ + +
Sbjct: 110 EAVIAVLED----------AQFQPMWYV----AKKAYLYPMESYSHLLVALRKLLVRVHI 155
Query: 151 EGIPWVTLNVVE-----KLSH--SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILP 203
E IP +E +L H +ID N +P + D V ++ P
Sbjct: 156 EEIPSFFFRCLEAVQEIQLQHERNIDG---NASQPADVDDVVYSQL------------RP 200
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +GV F + RGGR +IAD+MGLGKT+QA+A+A + + +L+VCP L +W +EL
Sbjct: 201 FQKKGVDFIIARGGRGMIADDMGLGKTVQALAVAHHYRNEWPVLIVCPLSLVENWTKELM 260
Query: 264 RWLPFC-LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESH 322
R FC +P +F +N+ V +T V++ Y+ L L + ++I+DESH
Sbjct: 261 R---FCSIPIGRIAIF--QNSKVRVTDVHSAVIVPYSSLKSLDTQ--STTFQVVILDESH 313
Query: 323 HVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK 380
+++ SKRT A L + +R++LLSGTP+LSRP +++ Q+ + +K
Sbjct: 314 YIKTVDSKRTV------AALKLCRVARRVLLLSGTPTLSRPIELYPQLQTIMHPSWTPSK 367
Query: 381 YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQ 440
FA YC+ + G+ D+ + EL+VLL+Q V IRR K+ L +LP K RQ
Sbjct: 368 SLFAARYCN-----AFVGRFGVDYLGHSHMSELHVLLQQFV-IRRTKRELGNELPSKIRQ 421
Query: 441 IIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT----PKDSDEHDDSGACCRLGKISYQE 496
++ + + E + + +V + +S KD T ++ +G G ++
Sbjct: 422 LLYVYITPKEKKALEKSVLALRNSFKDGATLPTLGTAVSTTNMTQGTG-----GNLTTCT 476
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN--------KMIIFAHHLKVLDGVQE 548
G A + + A + AA D + K+IIFAHH +++ ++E
Sbjct: 477 PGGATATRNMTAFDLKIATARAKIAAVQDYVKSTTEQMVESGQKVIIFAHHQCMMEAIRE 536
Query: 549 FIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ ++ + ++ I G T R++ F+ S +A++ + + GVG + + A V
Sbjct: 537 AVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHNLTCATMV 596
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
VF EL +PS LQ EDR HR GQ+SA I A+ T+D W L L
Sbjct: 597 VFAELDWNPSTHLQCEDRVHRMGQSSACVIKYLLAEGTSDSVIWPMLQTKL 647
>gi|449018941|dbj|BAM82343.1| SWI/SNF related, matrix associated, actin dependent regulator of
chromatin, subfamily a-like [Cyanidioschyzon merolae
strain 10D]
Length = 820
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 257/487 (52%), Gaps = 40/487 (8%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L + +LPFQ GV + +GGR L+ADEMGLGKT+QAIAIA +L+VCP+ LR
Sbjct: 270 LWEQLLPFQRTGVERAIVQGGRVLLADEMGLGKTIQAIAIAWVLRKDWPVLIVCPSSLRG 329
Query: 257 SWAEELERWLPFC--LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
+W E L P+DIH++ + L V ++SY ++ RL + +++
Sbjct: 330 AWCREWRDRLAGASLTPSDIHVLETATDAGKPLRA---VNIVSYDLVGRLADAQLQRV-G 385
Query: 315 LLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+LI+DESH+++ +KRT + +L ++ R++LL+GTP+LSRP ++F Q++ L
Sbjct: 386 VLILDESHYIKSVDAKRT------QFLLPWLKRIPRVLLLTGTPALSRPAELFTQLHGLA 439
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P + K +FA YC ++ D S L EL+ +L QTVMIRRLK +L
Sbjct: 440 PSIFSDWK-EFAYRYCGARSTPWKA----LDTSGATNLSELHRILTQTVMIRRLKAEILD 494
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
QLP K R + + S A + + +E+ A+ D+ S + K
Sbjct: 495 QLPRKERGVAYVEPAASTPEQLHAVLDELAATEQKAST------GDQQAASKVKALMSK- 547
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
++ +AK+ V+A+ D+ +K ++FA+H +LD V+ ++ E
Sbjct: 548 AFHLTAVAKVPA---------VLAQC-----ADIWRTGHKFLLFAYHELMLDAVEGWLRE 593
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
+ ++RIDG T +RQ+ V FQ + ++A++ +TA G GL ++A V+F EL +
Sbjct: 594 QQGTWIRIDGKTQVTERQALVDRFQDDPQCRVALLALTAAGAGLTLTAAHVVLFAELYWN 653
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEI 672
P + QAEDR HR GQ +V+I + D+ W+++ L + S+ +GK D +
Sbjct: 654 PGTLRQAEDRVHRIGQKESVSIRYLILPRSLDDRMWRSVQNKLDILHSSLDGKIDRERVN 713
Query: 673 AVEGVSY 679
V G ++
Sbjct: 714 VVAGSAW 720
>gi|341879801|gb|EGT35736.1| hypothetical protein CAEBREN_29645 [Caenorhabditis brenneri]
Length = 675
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 157/535 (29%), Positives = 244/535 (45%), Gaps = 99/535 (18%)
Query: 132 LRDYNPVLTCLKNSAGI--EVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEM 189
+ D++ + KN+ I EVEGIP L ++ P L+ + ++
Sbjct: 159 ISDHSTITNIFKNATTIKVEVEGIPPNILQLINNFKPK--------ATPNDLTQVMDPDL 210
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
I KL P+Q EGV F L R GR L+ADEMGLGK++QA+ IA + S +L+V
Sbjct: 211 IQKL--------FPYQKEGVIFALERNGRILLADEMGLGKSVQALTIARYYKSDWPLLIV 262
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF--GHRNNPVHLTRFPRVVVI-SYTMLHRLRK 306
CPA ++ +W +++ + P IH +F ++P+ R V I SY +
Sbjct: 263 CPASVKGAWKKQINTFFPI-----IHRIFIVDKSSDPLPDVRTSNTVAIMSYEQMALKAD 317
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + +A +I DESH ++ K K D++ ++LLSGTP+L
Sbjct: 318 ILKREKYATIIFDESHMLKDGK----ARRTKVATDLSKHALHVILLSGTPAL-------- 365
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
YCD G QG+ + EEL ++ + +MIRRL
Sbjct: 366 --------------------YCD-----GKQGRWGLESKGCSNSEELAAIMSRRLMIRRL 400
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K +L LP KRR+++ ++ DA D K +++ A
Sbjct: 401 KCDVLKDLPEKRREVV-----------------YVSGPTIDARMDDLQKARADYEKINAM 443
Query: 487 CRLGKI---SYQELGIAKLSGFREWL---SIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
R + Y GI K + E + +P D PR K++IFAHH
Sbjct: 444 DRKHESLLEFYSLTGIVKAAAVCEHILENYFYP-----------DAPPR--KVLIFAHHQ 490
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
VLD +Q ++++ +G +RIDG T R + FQ ++A++ ITA GVG+ ++
Sbjct: 491 IVLDTIQVEVNKRKLGSIRIDGKTPSHQRTALCDQFQNDENCRVAVLSITAAGVGITLTA 550
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
A VVF E+ +P ++QAEDRAHR GQ +V + AK T D+ W + + L
Sbjct: 551 ASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 605
>gi|71653795|ref|XP_815529.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70880590|gb|EAN93678.1| DNA helicase, putative [Trypanosoma cruzi]
Length = 938
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 186/657 (28%), Positives = 308/657 (46%), Gaps = 104/657 (15%)
Query: 41 LSKCRKFSTEPTHFP--KSALADPNSTTQLPENFRVRLE-ICSPD------SFSVTPLAI 91
+SKCR F+ P H + +A P T E VR E + P+ + +V+P +
Sbjct: 49 MSKCRFFALCPLHADGWRRVVAPPAVTG---EFIAVRFEAVLHPEKKTPHVAATVSPPEV 105
Query: 92 EGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNS-AGIEV 150
E + E+ + P Y KA +Y + Y+ +L L+ + +
Sbjct: 106 EAVIAVLED----------AQFQPMWYVAK----KAYLYPMESYSHLLVALRKLLVRVHI 151
Query: 151 EGIPWVTLNVVE-----KLSH--SIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILP 203
E IP +E +L H +ID N +P + D V ++ P
Sbjct: 152 EEIPSFFFRCLEAVQEIQLKHERNID---GNASQPADVDDVVYSQL------------RP 196
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ +GV F + RGGR +IAD+MGLGKT+QA+A+A + + +L+VCP L +W +EL
Sbjct: 197 FQKKGVDFIIARGGRGMIADDMGLGKTVQALAVAHHYRNEWPVLIVCPLSLVENWTKELM 256
Query: 264 RWLPFC-LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESH 322
R FC +P +F +N+ V +T V++ Y+ L L + ++I+DESH
Sbjct: 257 R---FCSIPIGRIAIF--QNSKVRVTDVHSAVIVPYSSLKSLDTQ--STTFQVVILDESH 309
Query: 323 HVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK 380
+++ SKRT A L + +R++LLSGTP+LSRP +++ Q+ + +K
Sbjct: 310 YIKTVDSKRTV------AALKLCRVARRVLLLSGTPTLSRPIELYPQLQTIMHPSWTPSK 363
Query: 381 YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQ 440
FA YC+ + G+ D+ + EL+VLL+Q V IRR K+ L +LP K RQ
Sbjct: 364 SLFAARYCN-----AFVGRFGVDYLGHSHMSELHVLLQQFV-IRRTKRELGNELPSKIRQ 417
Query: 441 IIRLLLKRSEIVSAKAAVGVINDSEKD--------ATNDKTPKDSDEHDDSGACCRLGKI 492
++ + + E + + +V + +S +D A T + C G
Sbjct: 418 LLYVYITPKEKKALEKSVLALRNSFRDGATLPTLGAAVGTTNMTQGTGGNLTKCTPGGAT 477
Query: 493 SYQELGI---------AKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
+ + + AK++ ++++ S + ES K+IIFAHH +
Sbjct: 478 ATRNMTAFDLKIATARAKIAAVQDYVKSTTEQMVES-----------GQKVIIFAHHQCM 526
Query: 543 LDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
++ ++E + ++ + ++ I G T R++ F+ S +A++ + + GVG +
Sbjct: 527 MEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHNL 586
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ A VVF EL +PS LQ EDR HR GQ+SA I A+ T+D W L L
Sbjct: 587 TCATMVVFAELDWNPSTHLQCEDRVHRMGQSSACVIKYLLAEGTSDSVIWPMLQTKL 643
>gi|71648872|ref|XP_813216.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70878080|gb|EAN91365.1| DNA helicase, putative [Trypanosoma cruzi]
Length = 744
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 247/478 (51%), Gaps = 55/478 (11%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
PFQ +GV F + RGGR +IAD+MGLGKT+QA+A+A + + +L+VCP L +W +EL
Sbjct: 2 PFQKKGVDFIIARGGRGMIADDMGLGKTVQALAVAHHYRNEWPVLIVCPLSLVENWTKEL 61
Query: 263 ERWLPFC-LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDES 321
R FC +P +F +N+ V +T V++ Y+ L L + ++I+DES
Sbjct: 62 MR---FCSIPIGRIAIF--QNSKVRVTDVHSAVIVPYSSLKSLDTQ--STTFQVVILDES 114
Query: 322 HHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA 379
H+++ SKRT A L + +R++LLSGTP+LSRP +++ Q+ + +
Sbjct: 115 HYIKTVDSKRTV------AALKLCRVARRVLLLSGTPTLSRPIELYPQLQTIMHPSWTPS 168
Query: 380 KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
K FA YC+ + G+ D+ + EL+VLL+Q V IRR K+ L +LP K R
Sbjct: 169 KSLFAARYCN-----AFVGRFGVDYLGHSHMSELHVLLQQFV-IRRTKRELGNELPSKIR 222
Query: 440 QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD----SDEHDDSGA---CCRLGKI 492
Q++ + + E + + +V + +S +D T D ++ +G C G +
Sbjct: 223 QLLYVYITPKEKKALEKSVSALRNSFRDGATLPTLGDVASTTNMAQGTGGNLTTCTAGGV 282
Query: 493 SYQ------ELGI----AKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
+ +L I AK++ ++++ S + ES K+IIFAHH
Sbjct: 283 TATRNMTAFDLKIATARAKIAAVQDYVKSTTEQMVES-----------GQKVIIFAHHQC 331
Query: 542 VLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
+++ ++E + ++ + ++ I G T R++ F+ S +A++ + + GVG +
Sbjct: 332 MMEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTNCHVAVLSMHSCGVGHN 391
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ A VVF EL +PS LQ EDR HR GQ+SA I A+ T+D W L L
Sbjct: 392 LTCATMVVFAELDWNPSTHLQCEDRVHRMGQSSACVIKYLLAEGTSDSVIWPMLQTKL 449
>gi|407425421|gb|EKF39414.1| DNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 819
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 165/553 (29%), Positives = 269/553 (48%), Gaps = 58/553 (10%)
Query: 126 KACVYKLRDYNPVLTCLKNS-AGIEVEGIPWVTLNVVE-----KLSH--SIDTGRWNPCR 177
KA +Y + Y+ +L L+ + +E IP +E +L H +ID N +
Sbjct: 7 KAYLYPMTSYSHLLVALRKILIRVHIEEIPSFFFRCLEAVQEIQLQHERNID---GNASQ 63
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
P D V ++ PFQ +GV F + RGGR +IAD+MGLGKT+QA+A+A
Sbjct: 64 PADTDDVVYSQL------------RPFQKKGVDFIIARGGRGMIADDMGLGKTVQALAVA 111
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFC-LPADIHLVFGHRNNPVHLTRFPRVVVI 296
+ + +L+VCP L +W +EL R FC +P I + +N+ V +T V++
Sbjct: 112 HHYRNEWPVLIVCPLSLVENWTKELMR---FCSIP--IGRIAILQNSKVRVTDVHSAVIV 166
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
Y+ L L + ++I+DESH+++ SKRT A L + +R++LLSG
Sbjct: 167 PYSSLKSLDTQ--STTFQVVILDESHYIKTVDSKRTV------AALKLCRVARRVLLLSG 218
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP+LSRP +++ Q+ + +K FA YC+ + G+ D+ + EL+
Sbjct: 219 TPTLSRPIELYPQLQTIMHPSWTPSKSLFAARYCN-----AFVGRFGVDYLGHSHMSELH 273
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
VLL+Q V IRR K+ L +LP K RQ++ + + E + + +V + +S +D T
Sbjct: 274 VLLQQFV-IRRTKRELGNELPSKIRQLLYVYITPKEKKALEKSVLALRNSFRDGATLPTL 332
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN--- 531
+ C G ++ G A + + A + AA D +
Sbjct: 333 GAVASTTNMTQCAG-GNLTTCTAGGATATRNMTAFDLKIATARAKIAAVQDYVKSTTEQM 391
Query: 532 -----KMIIFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
K+IIFAHH +++ ++E + ++ + ++ I G T R++ F+ S
Sbjct: 392 VESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTNC 451
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+A++ + + GVG + + A VVF EL +PS LQ EDR HR GQ+SA I A+ T
Sbjct: 452 HVAVLSMHSCGVGHNLTCATMVVFAELDWNPSTHLQCEDRVHRMGQSSACVIKYLLAEGT 511
Query: 643 TDESHWQNLNKSL 655
+D W L L
Sbjct: 512 SDSVIWPMLQTKL 524
>gi|401422772|ref|XP_003875873.1| putative DNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322492113|emb|CBZ27387.1| putative DNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1087
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 153/558 (27%), Positives = 270/558 (48%), Gaps = 75/558 (13%)
Query: 123 SGGKACVYKLRDYNPVLTCLKNSA--GIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEH 180
+ G+A +Y + Y ++ LK + + +E IP VE++ P
Sbjct: 106 TAGRAFLYPMAQYTRLVAALKAHSLPHVALEEIPSFYFRCVERMRQ----------LPRQ 155
Query: 181 LSDEVVDEMIGK--LPKS---LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA 235
+D+V G+ LP + + + PFQ +GVRF L R GR +IAD+MGLGKT+QAIA
Sbjct: 156 YADDVA---AGRACLPDAEDCVYRGLKPFQRDGVRFVLERHGRAMIADDMGLGKTVQAIA 212
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERW--LPFCLPADIHLVFGHRNNPVHLTRFPRV 293
+A + +LVVCP L +WA+E ++ +PF A I ++ G + T V
Sbjct: 213 VAHHYRDEWPVLVVCPMSLMENWAKEFNKFCGIPF---ARIAILQGAKAT---ATSLQAV 266
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++SY+ L K + + ++I+DESH+++ + + L + +R++LLS
Sbjct: 267 AIVSYSSL----KCVENAHFNVVILDESHYIKAGAA----KRAQQSLKLCRASRRVILLS 318
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP++SRP +++ Q+ + P L+ +K F YC+ + G+ D + +EL
Sbjct: 319 GTPAMSRPIELYAQLQAIQPSLV-PSKTQFGARYCN-----SFVGRFGIDLTGHAHPDEL 372
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-------IVSAKAAVGVINDSEK 466
+ LL+ +IRR K+ L +LP K RQ++ + + E I++ + ++ +
Sbjct: 373 HSLLRH-FLIRRTKRELGSELPSKSRQLLYMYITEKEKKALEKQIIALRRSLSSTSFFVG 431
Query: 467 DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
+ D + + + A R AK+ ++++S G + +
Sbjct: 432 NGGADWAARAPNVFEMKMATAR-----------AKIPAVQDYVS---------GIVEQHL 471
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFI----SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+ K+I+FAHH +++ ++ + + I ++ I G+T P R+ A F+
Sbjct: 472 D-SGEKLILFAHHQCMMEALRSAVEVVRPRQPIDYIYISGDTPPAQREPAAEHFRTEATC 530
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+AI+ + + G+G +F+ A VVF EL +PS LQ EDR HR GQ +I A+ T
Sbjct: 531 TVAILSMQSSGIGHNFTCASTVVFTELDWNPSTHLQCEDRVHRIGQAHPCHIKYLLAEGT 590
Query: 643 TDESHWQNLNKSLRCVSS 660
+D W L L ++
Sbjct: 591 SDSVIWPLLQTKLSVTAA 608
>gi|157114821|ref|XP_001652438.1| hypothetical protein AaeL_AAEL006963 [Aedes aegypti]
gi|108877144|gb|EAT41369.1| AAEL006963-PA [Aedes aegypti]
Length = 726
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 235/469 (50%), Gaps = 47/469 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL+D +L FQ +GV + + + GR LIADEMGLGKT QA+A+A + +L+ A R
Sbjct: 228 SLVDTLLDFQKDGVCYAIDKSGRALIADEMGLGKTYQALAVADFYKENWPLLICTTASTR 287
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
+WA ++ R L +P + + +H R+++ SY+++ + + ++E+ +
Sbjct: 288 DTWATKI-RQLFRHVPLYHIVTLQGSQDEIHDA---RILISSYSLMEKCAEKLLERGFGF 343
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+I+DESH ++ K ++A K KR++LLSGTP+LSRP ++F Q+ ML
Sbjct: 344 IIMDESHTLKNFKAKC----TAVAQELAKKAKRVILLSGTPALSRPVELFSQLQMLDRHF 399
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+Y + YC G Q + D S LEELN+LL MIRR KQ ++ QL
Sbjct: 400 FNFKEY--STRYC-----AGKQSKFGWDASGQSNLEELNLLLAARFMIRRTKQDVMSQLA 452
Query: 436 PKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
K R+ + L LL ++E +N D + K ++ +E +
Sbjct: 453 EKNRETVILDGSLLSKNEETEEN-----LNSYAADYSMSKG-REREE---------ILIQ 497
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
Y +AK +L V K IIFAHH+K+LD + +++S+
Sbjct: 498 YYSATAVAKAPAVCGYLK--------------QVLKEKQKFIIFAHHIKMLDAISKYLSK 543
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
+ + F+RIDG T R S V FQ + + A++ + A G+ ++AQ V+F EL +
Sbjct: 544 QKVDFIRIDGTTRSDLRSSLVEKFQTKDSCRAAVLSLKACNAGITLTAAQLVMFAELDWN 603
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
PS + QAE RAHR GQ V + AK T D+ W L K ++ A
Sbjct: 604 PSTLAQAESRAHRIGQEGTVIVRYLLAKGTADDIIWTMLQKKQNILNKA 652
>gi|410968590|ref|XP_003990785.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Felis
catus]
Length = 1088
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 142/457 (31%), Positives = 231/457 (50%), Gaps = 55/457 (12%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAIAIA + +L+V P+ LR W EE+E+W+P P DI+++ N
Sbjct: 1 MGLGKTIQAIAIAYFYKEEWPLLIVVPSSLRYPWTEEMEKWIPELSPEDINVI----QNK 56
Query: 285 VHLTRFP--RVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKA 338
+ R +V ++ Y +L +++I Q++ ++IVDESH+++ T K
Sbjct: 57 TDIGRISTSKVTILGYGLLTTDAETLICALNNQNFKVVIVDESHYMKSRNATRS----KI 112
Query: 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQG 398
+L + KR +LL+GTP+L RP ++F QI L+P G ++AK YC+ +
Sbjct: 113 LLPIVQTAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWT-EYAKRYCNAH----MRS 167
Query: 399 QLFQDFSKGVRLEELNVLLKQTVMIRR--LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA 456
+ + +KG + E+ V + R + Q V L + AK
Sbjct: 168 HIHEYVAKG-DVSEITVYVSSRSSCDRWTVGQGNYVML-----------------IRAKL 209
Query: 457 AVGVINDSEKDATNDKTPKDSDEHDDSGAC-CRLGKIS--YQELGIAKLSGFREWLSIHP 513
G+ N ++ T+ + + +SGA +G I+ +++ IAK ++++ +
Sbjct: 210 MYGLGNPCKELNTSFEEWEKLMRAPNSGATETVMGLITRMFKQTAIAKAGAVKDYIKM-- 267
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++D S K ++FAHHL +L E + E ++RIDG+ +R V
Sbjct: 268 -MLQND----------SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLV 316
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+ FQ + ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VN
Sbjct: 317 NQFQKDPDTRVAILSIQAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVN 376
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
I+ A T D W LN+ + S NG+ + LQ
Sbjct: 377 IHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQLQ 413
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K +E FC+L C EE+ +R++ +LR ++
Sbjct: 907 KGYLQAVDNAGNPLCLHCQQPTCQTKQECKVNAWESRFCSLKCQEEFWIRSNNNYLRAKV 966
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F IEHGVC C L+ +L ++ QR+ +
Sbjct: 967 FEIEHGVCQLCNLNAQELFLRLRDAPKSQRKTLL 1000
>gi|158296666|ref|XP_317019.4| AGAP008426-PA [Anopheles gambiae str. PEST]
gi|157014820|gb|EAA12838.4| AGAP008426-PA [Anopheles gambiae str. PEST]
Length = 722
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 238/468 (50%), Gaps = 49/468 (10%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
SL++ +L FQ EGV F + +GGR LIADEMGLGKT QAIA+A + +LV A R
Sbjct: 210 SLVESLLAFQKEGVAFAIDKGGRALIADEMGLGKTYQAIAVADFYQQDWPLLVCTTASTR 269
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
SWA ++ + LP +P +H + + ++ RV++ SY+M+ R + ++++ + +
Sbjct: 270 DSWAHKIRQLLPH-IP--VHSIAALNSGQDYIGEC-RVLIASYSMMERCGEKLLDRGFGM 325
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
LI DESH ++ K + +A + +R+VLLSGTP+LSRP ++F Q+ ML G
Sbjct: 326 LIFDESHTLKNFKAKC----TTVAMALAKRARRVVLLSGTPALSRPVELFTQLQML-DGK 380
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
K +++ YC G Q D + L ELN+LL + MIRR K ++ +L
Sbjct: 381 FCSFK-EYSTRYC-----AGKQSNFGWDATGQSNLAELNLLLARKFMIRRTKDEVMSELT 434
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K R+ + +L S + + + G ++ D + K G+ +
Sbjct: 435 EKNRETV--VLDPSYLWTNEELEGNMSSYAADYSTSK-----------------GRQREE 475
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADI----DVNPRSNKMIIFAHHLKVLDGVQEFIS 551
L + + V AE+ A +V + K I+FAHH +LD +++ +S
Sbjct: 476 AL-----------IKYYSVTAEAKAPAVCAYLKEVVKENKKFIVFAHHHVMLDAIEKSLS 524
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
++ + F+RIDG+T R + V FQ + A++ + A G+ ++A V+F EL
Sbjct: 525 KQNVDFIRIDGSTRSDLRGALVERFQSKATCRAAVLSLKACNAGITLTAAHLVLFAELDW 584
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+PS + QAE RAHR GQ V + AK T D+ W L + +S
Sbjct: 585 NPSTLAQAESRAHRIGQADNVTVRYLLAKKTADDIIWTMLQRKQETLS 632
>gi|195035831|ref|XP_001989375.1| GH11691 [Drosophila grimshawi]
gi|193905375|gb|EDW04242.1| GH11691 [Drosophila grimshawi]
Length = 735
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 232/484 (47%), Gaps = 45/484 (9%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
++ + + L + ++PFQ EGV F + + GR +I DEMGLGKT QA+A+A F +LV
Sbjct: 220 VLASIDEKLAEKLMPFQKEGVCFAIAQQGRVMICDEMGLGKTYQALAVADYFREDWPLLV 279
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
A R +WA + LP +H V NN + +V++ SY M+ R +
Sbjct: 280 CTTASTRDTWARHITELLP---SVPVHCVQVLANN--QYLQDAKVLIASYNMMERSIDKL 334
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD-VAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+++ + +I DESH ++ K + AV +A + KR++LLSGTP+LSRP ++F Q
Sbjct: 335 LQRKFGFVIYDESHTLKNGK-----AKCTAVAKRLADQAKRVILLSGTPALSRPLELFTQ 389
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+ ++ + +F YCD G Q Q D + LEEL V+L M+RR K
Sbjct: 390 LQLIDGRFM--TFMEFTSRYCD-----GKQTQFGWDANGQSNLEELKVILTLKYMLRRTK 442
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+L QL K R+ + L D TND ++ + +
Sbjct: 443 AEVLPQLAEKNRETVVL------------------DPALVWTNDDAKSTCNQFNTALQNA 484
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
+ GK + L R + V + A + K IIFAHH ++D +
Sbjct: 485 K-GKSREEVL-------LRFYARTAEVKTRAVCAYLKTLVKEQPKFIIFAHHRVMMDAIS 536
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ + E + FVRIDG T+ R V +FQ + K A++ + A G+ ++A+ +VF
Sbjct: 537 DCLRELKVQFVRIDGRTVSDVRADYVDTFQKKSSCKAAVLSLKACNSGITLTAAELIVFA 596
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
EL +PS + QAE RAHR GQT V A T D+ W N+ KS + V S D
Sbjct: 597 ELDWNPSTLAQAESRAHRIGQTKPVICRYLMAHQTADDIIW-NMLKSKQEVLSKVGIFGD 655
Query: 668 ALQE 671
LQ+
Sbjct: 656 NLQQ 659
>gi|123467717|ref|XP_001317270.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121900000|gb|EAY05047.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 904
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 159/540 (29%), Positives = 265/540 (49%), Gaps = 64/540 (11%)
Query: 132 LRDYNPV---LTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDE 188
+R+Y V LT N+ ++GIP V++ LS+ RP ++
Sbjct: 409 IRNYLTVKSALTSAYNTFTAVLDGIPDF---VIKALSN---------FRPT----KIPMN 452
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSIL 247
+ LPK L + +LP Q E +++ R R LIADEMGLGKTLQA+AIA+ F + IL
Sbjct: 453 LFQNLPKRLSEKLLPHQKESIQYVASRNYRALIADEMGLGKTLQAVAIASLFGFPSKRIL 512
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
V+CP L +W + W P+ I+++ N P + + + +Y ++ +
Sbjct: 513 VMCPINLVEAWTDTFSEWTNIS-PSRINIMTKSANFPDN-----PLTIATYPVVQKSDGI 566
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+++ ++I DE H S + ++ K V + ++ K +LLSGTPS++RP ++F
Sbjct: 567 FQNRNFDMVIADECHEF--SNQGTKLH--KQVTPLISQAKAALLLSGTPSMNRPSELFTA 622
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+N+L P + ++ Y++++ YC GY + +EL +L++ +MIRR K
Sbjct: 623 LNLLRPDVF-RSFYEYSERYCH----GGYNEAGNYQANGSSHTDELKILMETLLMIRRQK 677
Query: 428 QHLLVQLPPKRRQIIRLLL----KRSEIVSA--KAAVGVINDSEKDATNDKTPKDSDEHD 481
+ +L LPPK R+ I LL K +E+V K +G+ K +
Sbjct: 678 EDVLSDLPPKNREHIMLLYTPSNKMTEMVELIRKQKIGI-----------KKGLQTFRSA 726
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
G ++ +E K+ W++ S DI + ++ K++ FAHH
Sbjct: 727 QRGLVWECFTLTSEE----KVEPVLHWMT-------SQKFRDI-LFCQNRKILFFAHHTV 774
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+L G+ E+++ + I + I+G T ++R+ + F+ E KIA++GI G+ A
Sbjct: 775 MLKGISEWLTFRNIDHILINGETSMKNRKILLDKFKSEPECKIAVLGIETISAGVTLVEA 834
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
VVF EL P+ LQAEDR HR GQT V+IY A + D+ W+ L + L + S
Sbjct: 835 SVVVFAELMYVPATHLQAEDRVHRIGQTQPVDIYYLHAPGSVDDRVWEILERKLEVLGSV 894
>gi|195114874|ref|XP_002001992.1| GI17136 [Drosophila mojavensis]
gi|193912567|gb|EDW11434.1| GI17136 [Drosophila mojavensis]
Length = 733
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 152/502 (30%), Positives = 234/502 (46%), Gaps = 76/502 (15%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDV-----------------------ILPFQLEGVRFGLRR 215
+H+ D + +IG +PK ++D+ ++PFQ EGV F + +
Sbjct: 188 QHVGDLKPNVVIGTIPKKVIDLCKQPAKPLERSVLASIEPKLAEKLMPFQEEGVCFSIAQ 247
Query: 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
GR +I DEMGLGKT QA+A+A F +L+ A R +WA + LP +H
Sbjct: 248 QGRVMICDEMGLGKTYQALAVADYFREDWPLLICTTASTRDAWAMHITELLP---SVPVH 304
Query: 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335
+ N+ +++ +V++ SY M+ R ++E+ + +I DESH ++ K +
Sbjct: 305 CIQLLTNSNMYVVD-AKVLITSYNMMERYMDKLLERKFGCVIYDESHTLKNGK-----AK 358
Query: 336 VKAVLD-VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
AV +A + KR++LLSGTP+LSRP ++F QI ++ + +Y YCD
Sbjct: 359 CTAVAKRLADQAKRVILLSGTPALSRPLELFTQIQLVDSRFMNFMEY--TSRYCD----- 411
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
G Q D + L+EL V+LK M+RR K +L QL K R+ + L
Sbjct: 412 GKQSHFGWDANGQSNLDELKVVLKLKYMLRRTKAEVLPQLAEKNRETVVL---------- 461
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE-WLSIHP 513
A+ ND+ K +C L EL AK E L +
Sbjct: 462 DPALVWTNDAAK-----------------SSCTELN----NELQKAKGKSREELLLRFYA 500
Query: 514 VIAESDGAADI----DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
AE A + K IIFAHH ++D + + + + F+RIDG T R
Sbjct: 501 RTAEVKTKAVCAYLKTLIKEKLKFIIFAHHRIMMDAICDALRSLKVSFIRIDGQTRSDVR 560
Query: 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
V +FQ S+ + A++ + A G+ ++A+ +VF EL +PS + QAE RAHR GQT
Sbjct: 561 AGYVDTFQKSSSCRAAVLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQT 620
Query: 630 SAVNIYIFCAKDTTDESHWQNL 651
V A T D++ W L
Sbjct: 621 KPVVCRYLMANQTADDTIWNML 642
>gi|19074332|ref|NP_585838.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19068974|emb|CAD25442.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
GB-M1]
Length = 556
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 241/481 (50%), Gaps = 71/481 (14%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E+IG + ++LPFQ EGV L RGGR ++AD+MGLGKT+QA+A+A + + ++
Sbjct: 115 ELIG----PIYSMLLPFQREGVEHALNRGGRMIVADDMGLGKTIQALAVAYYYRAEWPLV 170
Query: 248 VVCPAILRLSWAEELERWLPF-CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
++ PA L WA+ R+L + FG + V+SY +
Sbjct: 171 IIAPASLLEDWADACRRFLGMEAMVMRRKEDFGQE-----------IGVVSYEVASS-HA 218
Query: 307 SMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+++ ++I DE H+++ +KRT KA++ + KV R +LLSGTP++SRP ++
Sbjct: 219 NVLACGAGVVIADECHYLKSLQTKRT------KAIVPLLQKVSRALLLSGTPAVSRPLEL 272
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ I+ + + + ++ YC+ + V GQ + D+ EEL+ +L++ +MIR
Sbjct: 273 YPIISAVDRTIFPRFA-EYGARYCNGRKV----GQWY-DYKGCSNAEELHYVLRKFLMIR 326
Query: 425 RLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
R K +L QLPPK RRQ++ G +D KD + D+
Sbjct: 327 RTKDEVLGQLPPKFRRQVVL------------ECTGRQDDPRKDLVGESV--------DT 366
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
+ Y+E K+ +++L+ + + K ++F HH +++
Sbjct: 367 NVV-----MQYREAVGLKVDPVKQYLAT--------------MVEKGMKFVVFCHHTEMM 407
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+ ++ F +E+ + +RIDG+ R V FQ + EV +A++ ITA GL ++ +
Sbjct: 408 ESLEGFFAERNVPMIRIDGSVPSTSRHLLVKKFQENEEVMVALLSITACSTGLTLTAGRA 467
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VVF EL +P ++LQAEDR HR GQ S+V+I AK T DE W L L + S
Sbjct: 468 VVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWPKLLSKLNVLESLGV 527
Query: 664 G 664
G
Sbjct: 528 G 528
>gi|449329397|gb|AGE95669.1| SNF2/rad54 helicase family protein [Encephalitozoon cuniculi]
Length = 556
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 241/481 (50%), Gaps = 71/481 (14%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E+IG + ++LPFQ EGV L RGGR ++AD+MGLGKT+QA+A+A + + ++
Sbjct: 115 ELIG----PIYSMLLPFQREGVEHALNRGGRMIVADDMGLGKTIQALAVAYYYRAEWPLV 170
Query: 248 VVCPAILRLSWAEELERWLPF-CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
++ PA L WA+ R+L + FG + V+SY +
Sbjct: 171 IIAPASLLEDWADACRRFLGMEAMVMRRKEDFGQE-----------IGVVSYEVASS-HA 218
Query: 307 SMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+++ ++I DE H+++ +KRT KA++ + KV R +LLSGTP++SRP ++
Sbjct: 219 NVLACGAGVVIADECHYLKSLQTKRT------KAIVPLLQKVSRALLLSGTPAVSRPLEL 272
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ I+ + + + ++ YC+ + V GQ + D+ EEL+ +L++ +MIR
Sbjct: 273 YPIISAVDRTIFPRFA-EYGARYCNGRKV----GQWY-DYKGCSNAEELHYVLRKFLMIR 326
Query: 425 RLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
R K +L QLPPK RRQ++ G +D KD + D+
Sbjct: 327 RTKDEVLGQLPPKFRRQVVL------------ECTGRQDDPRKDLVGESV--------DT 366
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
+ Y+E K+ +++L+ + + K ++F HH +++
Sbjct: 367 NVV-----MQYREAVGLKVDPVKQYLAT--------------MVEKGMKFVVFCHHTEMM 407
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+ ++ F +E+ + +RIDG+ R V FQ + EV +A++ ITA GL ++ +
Sbjct: 408 ESLEGFFAERNVPMIRIDGSVPSTSRHLLVKKFQENEEVMVALLSITACSTGLTLTAGRA 467
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
VVF EL +P ++LQAEDR HR GQ S+V+I AK T DE W L L + S
Sbjct: 468 VVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWPKLLSKLNVLESLGV 527
Query: 664 G 664
G
Sbjct: 528 G 528
>gi|431917999|gb|ELK17228.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Pteropus alecto]
Length = 1052
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 245/485 (50%), Gaps = 63/485 (12%)
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+ ++ L+ +LPFQ GV F + +GGR L+AD+MGLGKT+QAI IAA + +LVV
Sbjct: 444 LSRVDPKLVSSLLPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVV 503
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P+ +R +W + +WLP P +I++V ++ LT V ++S+ +L +L K +
Sbjct: 504 VPSSVRFTWEQAFLQWLPSLSPENINVVVTGKD---RLTA-GLVNIVSFDLLSKLEKQL- 558
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI
Sbjct: 559 KTHFKVVIIDESHFLKNIKTA----RCRAAVPLLKIAKRVILLSGTPAMSRPAELYTQII 614
Query: 370 MLWPGLLGKAKYDFAKTYCDVKT-VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ P + + F YCD K G+ D+S L EL +LL++ VM+RRLK
Sbjct: 615 AVKPTFFPQF-HAFGLRYCDAKRHAWGW------DYSGSSNLGELKLLLEEAVMLRRLKS 667
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+L QLP K+R+++ A G IN + + + + + + G
Sbjct: 668 DVLAQLPAKQRKMVVF------------APGQINAKARTSLDAAAEEMTTKGKSKGQQRE 715
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ + AK+ E++ D+ + R K ++FAHH VLD + +
Sbjct: 716 ALILFFNRTAEAKIPSIIEYI------------LDLLESGR-EKFLVFAHHKVVLDAITK 762
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +K + +RIDG+T DR+ FQLS +A++ ITA +GL FSSA VVF E
Sbjct: 763 VLEKKQVQHIRIDGSTSSADREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAE 822
Query: 609 L---P--------QSPSLMLQA----------EDRAHRRGQTSAVNIYIFCAKDTTDESH 647
L P +SP +++ A +DR+ + A++ K + +E
Sbjct: 823 LFWNPGVRDTEVLKSPGMLMAAGRKELVSGRQDDRSFVDRGSWALHHVTLAVKSSEEEGL 882
Query: 648 WQNLN 652
W +L
Sbjct: 883 WWDLG 887
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
P++ +++QAEDR HR GQ+S+V I+ A+ T D+ W + + ++ L
Sbjct: 903 PRALQVLMQAEDRVHRIGQSSSVGIHYLVARGTADDYLWPLIQEKIKV-----------L 951
Query: 670 QEIAVEGVSYLEMSDKTD 687
E V ++ EM++ TD
Sbjct: 952 GEAGVSEANFSEMTEDTD 969
>gi|224001070|ref|XP_002290207.1| Hypothetical protein THAPSDRAFT_262487 [Thalassiosira pseudonana
CCMP1335]
gi|220973629|gb|EED91959.1| Hypothetical protein THAPSDRAFT_262487, partial [Thalassiosira
pseudonana CCMP1335]
Length = 466
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 234/484 (48%), Gaps = 73/484 (15%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+ P+Q GV F L + GR L+ADEMGLGKT+QAIA + + +LV+CP+ R W
Sbjct: 24 LAPYQRGGVEFILDKEGRALLADEMGLGKTVQAIAAMSAYRHEWPLLVLCPSTARYHWEI 83
Query: 261 ELERWLPFCLPA----DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL--RKSMIEQDWA 314
E WL A DI+++ ++ + +VV+ S ++ L + + +
Sbjct: 84 EFRHWLGKTSLAKGSDDINVLTSGKDYILRYDGTTKVVICSLGLIVALVNNERIYPGMFK 143
Query: 315 LLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+IVDESH ++ SKRT ++V+ + R +LLSGTP+L+RP +++ Q+++L
Sbjct: 144 CVIVDESHALKNKSSKRT------QSVVPLLKAADRCLLLSGTPALARPSELWPQLSVL- 196
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS------KGVRLEELNVLLKQTVMIRRL 426
DF Y + + G + S L EL+ LL TVMIRR+
Sbjct: 197 -------SDDFYAKYTRGEKGEPDSGTRARWVSCSSYADASFWLAELHTLLTSTVMIRRM 249
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT-NDKTPKDSDEHDDSGA 485
K +L LP K R+ KA + V+ ++ T D + ++++ G
Sbjct: 250 KADILKNLPSKIRE--------------KAFISVMGRLAREHTVADSSLGLGPQYNEQGE 295
Query: 486 CCRLGKISYQELGIAKLSG-------FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ ++ + I S + WL+ +P K+ IFAH
Sbjct: 296 EIKSKEVLHHLYNITGRSKIDKVTKMLKSWLA----------------DPTKGKLCIFAH 339
Query: 539 HLKVLD------GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
HL VL+ G+ F+ F+RIDG T P+ RQ + +FQ V+IA++GITA
Sbjct: 340 HLDVLNAITRGAGLSNFVGSN-TRFIRIDGATNPKTRQEQILTFQTDPTVRIAMLGITAA 398
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
GV + +++ V F EL +P++M+QAEDR HR GQ + V F AK T DE W+ +
Sbjct: 399 GVAVTLTASSTVWFAELFWTPAIMIQAEDRCHRIGQQARVRCLYFVAKSTLDEVLWKLIE 458
Query: 653 KSLR 656
K R
Sbjct: 459 KKFR 462
>gi|389584766|dbj|GAB67498.1| helicase [Plasmodium cynomolgi strain B]
Length = 1291
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 239/525 (45%), Gaps = 43/525 (8%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
+ + ++E+ KLPK + VILP+QLE V F ++ GR LI DEMGLGKTLQAI I F
Sbjct: 383 IKKKCLEEIKKKLPKRIQKVILPYQLESVYFFKQQNGRILIGDEMGLGKTLQAICIFH-F 441
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
L+V P+ L+L+WA E+E+++P P+ + LV G N+ R R++++S+ +
Sbjct: 442 FRLYPTLIVTPSSLKLNWACEIEKFVPAFDPSKV-LVVGGSNDFPRGARLYRIIIVSFEL 500
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+L + E + L+IVDESH +R + + K + K K ++ LSGTPS++R
Sbjct: 501 YKKLAHLINEIKFKLIIVDESHFIRTVHYGKQSQLAKMIKSTLKKTKNVIFLSGTPSINR 560
Query: 361 PYDIFHQINMLWPG--LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
P +I+HQI L + K K+ F + +C +G + + + +R E ++ LK
Sbjct: 561 PINIYHQIKYLINSKKIFCKNKFTFGEEFCKKYFCRGQ-----KIYEENLRSWEFHLFLK 615
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN-----DSEKDATNDKT 473
+TVMIRR + P ++ L + V ++ SE++
Sbjct: 616 KTVMIRRSISEVFTSSFPDLKRFFVYLPHGPYTIGTDNLVNFLSPSLCPPSEEENALQNV 675
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR---- 529
KDS E S + E+ + + + V+
Sbjct: 676 VKDSKEGTQSVG---------SDFTTPNRQALSEFFQVQIKSKKVEEGLSKVVHAMKYME 726
Query: 530 ----SNKMIIFAHHLKVLDGVQEFI---------SEKG-IGFVRIDGNTLPRDRQSAVHS 575
K IIF +HL V ++E + SE+ I +V + G+ ++++ +
Sbjct: 727 EHFPGKKKIIFCYHLTVCKCIEEELLKMIKSKKKSEQAIIDYVVLKGSLSEKEKREKIQF 786
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
F++++ + I I + GLDF+ FLE P + + Q E R R+ Q ++
Sbjct: 787 FRMNHSCQYGIFTICSVSHGLDFTFCNLCFFLEFPVNFFHLQQCESRLFRKNQQFNTYVF 846
Query: 636 IFCAKD--TTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVS 678
F K+ +D W+ S +G +++ E VS
Sbjct: 847 YFLLKNGLGSDYKTWKRFTLCAHSTRSIVDGTEFVAKDLLYENVS 891
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPL---SLEQRRK 982
++FC C + Y L+ S +R ++ + G+C C+LDC L++ IK L S+ ++
Sbjct: 1151 NMFCEGKCRKFYFLKKSSTSIRRLIYERDKGICNICKLDCTNLIRQIKNLKYFSINEKID 1210
Query: 983 YIVRVAP 989
Y ++ P
Sbjct: 1211 YFIKKYP 1217
>gi|340058702|emb|CCC53062.1| putative DNA helicase [Trypanosoma vivax Y486]
Length = 948
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 242/485 (49%), Gaps = 67/485 (13%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
PFQ GV F + RGGR +IAD+MGLGKT+Q IA A + + L+VCP L +WA+EL
Sbjct: 179 PFQKRGVDFIVARGGRGMIADDMGLGKTVQGIAFAHHYRNEWPALIVCPLSLMENWAKEL 238
Query: 263 ERWLPFC-LPADIHLVFGHRNNPVHLTRFP-----RVVVISYTMLHRLRKSMIEQDWALL 316
R FC +PA R +H T+ VV+++Y+ L L I++ + ++
Sbjct: 239 TR---FCGIPAG-------RIATIHTTKLSTLDVYSVVIVAYSSLKCLDG--IKETFKVV 286
Query: 317 IVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
I+DESH+++ +KRT + L + KR++LLSGTP+LSRP +++ Q+ +
Sbjct: 287 ILDESHYIKSVDAKRTV------SALKLCRSAKRVLLLSGTPTLSRPIELYPQLQTIMRS 340
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
K F YC+ + G+ DFS + EL+VLL+Q V IRR K+ + +L
Sbjct: 341 SWSPTKTQFGARYCN-----AFVGRFGIDFSGHSNMSELHVLLQQFV-IRRTKKDMAGEL 394
Query: 435 PPKRRQIIRLLLKRSE-------IVSAKAAVGV-INDSEKDA------TND-KTPKDSDE 479
P K RQ++ L + E +++ K + G + DS A T D +P
Sbjct: 395 PSKSRQMLYLYITPKERKAMEKDVLALKESFGSELADSSSPAPFALTTTADWSSPVAGSL 454
Query: 480 HDDSGACCRLGKISYQELGI----AKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMI 534
++ EL I AK+ ++++ S+ + E+ K+I
Sbjct: 455 GGSPSGSGLSKPMNAFELRIATARAKIPAVQDYMRSMAEQMVET-----------GEKVI 503
Query: 535 IFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
FAHH ++D ++E + +K + ++ + G+T R + + F+ + +AI+ +
Sbjct: 504 FFAHHQIMMDALRETVETANPKKPLDYIYVTGDTPAAQRDTLISHFRSTPTCHVAILSMH 563
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
+ GVG + + A VVF EL +PS LQ EDR HR GQ+S I A+ T+D W
Sbjct: 564 SCGVGHNMTCATMVVFAELDWNPSTHLQCEDRVHRIGQSSPCVIKYLLAEGTSDSVIWPL 623
Query: 651 LNKSL 655
L L
Sbjct: 624 LRTKL 628
>gi|156100755|ref|XP_001616071.1| helicase [Plasmodium vivax Sal-1]
gi|148804945|gb|EDL46344.1| helicase, putative [Plasmodium vivax]
Length = 1522
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 146/520 (28%), Positives = 245/520 (47%), Gaps = 33/520 (6%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
+ + ++E+ +LP+ + VILP+QL+ V F + GR LI DEMGLGKTLQAI I F
Sbjct: 614 IKNSCLEEIKKRLPRRIQKVILPYQLQSVYFFKEKNGRILIGDEMGLGKTLQAICIFH-F 672
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
L+V P+ L+L+WA E+E++LP P+ + LV G N+ R R++++S+ +
Sbjct: 673 FRLYPTLIVTPSSLKLNWACEIEKFLPALDPSKV-LVVGGSNDFPRGARLYRIIIVSFEL 731
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+L + E ++ L+IVDESH +R + + K + K KR++ LSGTPS++R
Sbjct: 732 YKKLAHLLNEINFKLVIVDESHFIRTVHYGKQSQLAKTIKGTLKKTKRVIFLSGTPSINR 791
Query: 361 PYDIFHQINMLWPG--LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
P +I+HQI L L K K F + +C +G + F + +R E ++ LK
Sbjct: 792 PINIYHQIKYLINSKRLFCKNKITFGEEFCKKYFCRGQ-----KIFEENLRSWEFHLFLK 846
Query: 419 QTVMIRR-LKQHLLVQLPPKRRQIIRL-----LLKRSEIVSAKAAVGVINDSEKDATNDK 472
+TVMIRR + + P +R + L + V++ + E++A
Sbjct: 847 KTVMIRRSISEVFTSNFPHLKRFFVYLPHGDYTIGSGNPVNSWSPPRCTPSGEENALQS- 905
Query: 473 TPKDSDEHDDSGA--CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
+DS E S A + + E K+ + + VI ++ +
Sbjct: 906 VGRDSKEGTQSVAPDFTPPNRKTLSEFFQVKIKSKKVEEGLSKVI---HSMKYMEEHFPG 962
Query: 531 NKMIIFAHHLKVLDGVQE----FISEKG------IGFVRIDGNTLPRDRQSAVHSFQLSN 580
K IIF +HL V ++E I K I +V + G+ ++++ + F++++
Sbjct: 963 KKKIIFCYHLTVCKCIEEELLKMIKRKKQTEQVIIDYVVLKGSLSEKEKREKIQFFRMND 1022
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ I I A GLDF+ FLE P + + Q E R R+ Q ++ F K
Sbjct: 1023 TCQYGIFTICAVSHGLDFTFCHLCFFLEFPVNFFHLQQCESRLFRKNQQFDTYVFYFLLK 1082
Query: 641 D--TTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVS 678
+ +D W+ S +G +++ E VS
Sbjct: 1083 NGLGSDYKTWRRFTLCAHSTRSIVDGTEFVAKDLLYENVS 1122
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKP---LSLEQRRK 982
++FC C + Y L+ S +R ++ + GVC C+LDC L++ IK + ++
Sbjct: 1382 NMFCEGKCRKFYFLKKSSNSIRRLIYERDKGVCNICKLDCTNLIRQIKNQKYFPINEKID 1441
Query: 983 YIVRVAP 989
Y ++ P
Sbjct: 1442 YFIKRYP 1448
>gi|339241373|ref|XP_003376612.1| domain protein, SNF2 family [Trichinella spiralis]
gi|316974660|gb|EFV58143.1| domain protein, SNF2 family [Trichinella spiralis]
Length = 737
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 161/578 (27%), Positives = 283/578 (48%), Gaps = 100/578 (17%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQQSAT----------TASNRQDAWRLSKCRKFSTE 50
M ++EEQ +R EANR AL RKA Q SA+ S + + +++ + +
Sbjct: 123 MALSEEQLRRIEANRNRALQLRKAKQNSASLPSSSGCTLKNISGEKTSVSVAQSSTLAAK 182
Query: 51 PTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTP---------LAIEGFVYPGEEE 101
P + P L +++ N V+ ++ VT I +PG E
Sbjct: 183 PKNPPLGGLG-----SKISNNLSVQSGKGRSNNREVTAKCVLISGGRFEIHSSYHPGMVE 237
Query: 102 CLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVL--TCLKNSAGIEVEGIPWVTLN 159
R L P N+ ++ + + D PV+ + K ++ +G+P + N
Sbjct: 238 LFRSL--------PKEKVFYNAVQRSWAFHV-DMYPVVAESISKCKPPVKFDGLPLIVQN 288
Query: 160 VVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRC 219
V+++ TG ++ I ++ + + + PFQLE V+ GR
Sbjct: 289 VLKQKKDYYCTG--------------IEREICRIDSEIKNQLFPFQLEAVK-----KGRL 329
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG 279
LIADEMGLGKT++A+A+A+ + + +LVVCP+ ++ +W EE+E LPF I ++
Sbjct: 330 LIADEMGLGKTVEALAVASYYRNEWPLLVVCPSSMKYTWVEEIENRLPFVKSNQIVVLNT 389
Query: 280 HRN---NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
R+ NP + V++ SY + +++I + ++++I+DESH+++ + RT +
Sbjct: 390 GRDSLPNPSDCS----VLITSYDFMVNQSEALIGRKFSVVILDESHNIK-NFRTQRYKVA 444
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
+L A KR++LLSGTP+LS+P ++F QI+ + P + K +F + YC+ K ++
Sbjct: 445 TKLLKTA---KRVILLSGTPALSKPSELFTQIDCIAPRMF-KNFVEFGQRYCNPKMIKLG 500
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA 456
++ D+S LEEL ++LK+T+M+RR K +L QLPPK R+++ L K
Sbjct: 501 SKTVY-DYSGASNLEELQLILKETIMLRRTKDQVLSQLPPKIRKVVVL---------NKQ 550
Query: 457 AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY-QELGIAKLSGFREWLSIHPVI 515
+ + +S + A +K + +H+ +SY E AK+ E++S
Sbjct: 551 LINLGLESLQSA-KEKMDQSFGKHE--------YLLSYFAETAQAKIQATIEYIS----- 596
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
++ + K IIFAHH+ +LD + EF+S K
Sbjct: 597 ---------ELIESNQKFIIFAHHMIMLDAISEFLSSK 625
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
S +++QAEDRAHR GQ ++V I AK T D++ W + K L
Sbjct: 623 SSKILVQAEDRAHRVGQLNSVLIIYLVAKGTADDNIWTMIKKKL 666
>gi|109104419|ref|XP_001101449.1| PREDICTED: zinc finger Ran-binding domain-containing protein
3-like, partial [Macaca mulatta]
Length = 958
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 203/391 (51%), Gaps = 40/391 (10%)
Query: 292 RVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
+V V+ Y +L +++I+ Q++ ++IVDESH+++ T + +L V K +
Sbjct: 6 KVTVLGYGLLTADAETLIDALNNQNFKVVIVDESHYMKSRNATRS----RILLPVVQKAR 61
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSK 406
R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+ + Y G+ Q D
Sbjct: 62 RAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNARI--RYFGKRPQWDCRG 118
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-E 465
L EL+ LL +MIRRLK +L QLPPK RQ I L AA +N S E
Sbjct: 119 ASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFE 170
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+ +TP G R+ +++ IAK ++++ + + ++D
Sbjct: 171 EWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND------ 217
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
S K ++FAHHL +L E + E ++RIDG +R V+ FQ + ++A
Sbjct: 218 ----SLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGGVSSSERIHLVNQFQKDPDTRVA 273
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D
Sbjct: 274 ILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDT 333
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
W LN+ + S NG+ + +Q A EG
Sbjct: 334 LMWGMLNRKAQVTGSTLNGRKEKIQ--AEEG 362
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 777 KGYLQAVDNEGNPLCLHCQQPTCQTKQACKVNAWDSRFCSLKCQEEFWIRSNNSYLRAKV 836
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F E GVC C ++ +L ++ QR+K +
Sbjct: 837 FETERGVCQLCNVNAQELFLRLRDAPKSQRKKLL 870
>gi|26346797|dbj|BAC37047.1| unnamed protein product [Mus musculus]
Length = 788
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 223/420 (53%), Gaps = 43/420 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 391 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 450
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 451 TWEQAFLRWLPSLSPENINVVVTGKG---RLTAG-LVNIVSFDLLCKLERQL-KTPFKVV 505
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 506 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 561
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 562 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 614
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E + +
Sbjct: 615 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKEAL---------LVFFN 661
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 662 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 708
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 768
>gi|148667868|gb|EDL00285.1| Swi/SNF related matrix associated, actin dependent regulator of
chromatin, subfamily a-like 1, isoform CRA_b [Mus
musculus]
Length = 800
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 137/420 (32%), Positives = 223/420 (53%), Gaps = 43/420 (10%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L+ ++PFQ EGV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R
Sbjct: 403 LVSSLMPFQREGVSFAISKRGRLLLADDMGLGKTVQAICIAAFYRKEWPLLVVVPSSVRF 462
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W + RWLP P +I++V + LT V ++S+ +L +L + + + + ++
Sbjct: 463 TWEQAFLRWLPSLSPENINVVVTGKG---RLTAG-LVNIVSFDLLCKLERQL-KTPFKVV 517
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K +A + + KR++LLSGTP++SRP +++ QI + P
Sbjct: 518 IIDESHFLKNIKTA----RCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFF 573
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ + F YCD K + G+ D+S L EL +LL++ +M+RRLK +L QLP
Sbjct: 574 PQF-HAFGLRYCDAKRLPWGW------DYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLP 626
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+R+++ ++ I S A E T DKT + E + +
Sbjct: 627 AKQRKMV--VVNPGRISSRAKAALDAAAKE--MTKDKTKQQQKEAL---------LVFFN 673
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
AK+ E++ D+ ++ K ++FAHH +LD V + + K +
Sbjct: 674 RTAEAKIPCVVEYI------------LDL-LDSGREKFLVFAHHKVILDAVAKELERKNV 720
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
+RIDG+T DR++ FQLS +A++ ITA +GL FS+A VVF EL +P +
Sbjct: 721 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGV 780
>gi|380804765|gb|AFE74258.1| zinc finger Ran-binding domain-containing protein 3, partial
[Macaca mulatta]
Length = 424
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 188/362 (51%), Gaps = 34/362 (9%)
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
Q++ ++IVDESH+++ T + +L V K +R +LL+GTP+L RP ++F QI
Sbjct: 8 QNFKVVIVDESHYMKSRNATRS----RILLPVVQKARRAILLTGTPALGRPEELFMQIEA 63
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLKQH 429
L+P G+ D+AK YC+ + Y G+ Q D L EL+ LL +MIRRLK
Sbjct: 64 LFPQKFGRWT-DYAKRYCNARI--RYFGKRPQWDCRGASNLNELHQLLSD-IMIRRLKTE 119
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHDDSGACCR 488
+L QLPPK RQ I L AA +N S E+ +TP G R
Sbjct: 120 VLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAMETVMGLITR 172
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+ +++ IAK ++++ + + ++D S K ++FAHHL +L E
Sbjct: 173 M----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHLSMLQACTE 215
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ E ++RIDG +R V+ FQ + ++AI+ I A G GL F++A +VVF E
Sbjct: 216 AVIENKTRYIRIDGGVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAE 275
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
L P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S NG+ +
Sbjct: 276 LYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEK 335
Query: 669 LQ 670
+Q
Sbjct: 336 IQ 337
>gi|118396328|ref|XP_001030505.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89284810|gb|EAR82842.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 908
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 214/386 (55%), Gaps = 31/386 (8%)
Query: 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS--KRTSEPEEVKAVLDVAAKVKRI 349
RV+++SY + ++ + + ++I DE+H+++ + KRT+ ++L + K+K +
Sbjct: 3 RVLIVSYDLAPKVEEKIKRFKTNIVIADEAHYLKNAQAKRTN------SLLPILQKIKHV 56
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP+ +RP ++F ++++ P + K F YCD K + + G + D++
Sbjct: 57 ILLTGTPAFARPKEMFTLLSIIRPDIFKTFK-SFGDRYCDPKPAR-FGGGI--DYTGSTN 112
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
+EL +LK+T+MIRRLKQ +L QLP KRR+ + + + + +A + N S +
Sbjct: 113 EKELFYILKKTIMIRRLKQDVLSQLPSKRRKKVHVNVDPKILSEIQAILNQTNKSSLEQL 172
Query: 470 NDKTPK--DSDEHDDSGACCRLGKIS--YQELGIAKLSGFREWLSIHPVIAESDGAADID 525
++ K +S + +G+ +S YQ G AKL + ++ D
Sbjct: 173 FEQAQKQNESSNEEQNGSSSMFSALSLCYQLSGQAKLHELKNYIK--------------D 218
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
+ K+I+FAHH ++L+ ++ F+ +E + F+RIDG P++R V FQ +VK+
Sbjct: 219 LLENDIKIIVFAHHNEMLNQLENFVQNELQLKFIRIDGKVAPKERHERVQQFQTDPQVKV 278
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
AI+ + A GL +++ N+VF E+ +P++M QAEDRAHR GQ ++V + + T D
Sbjct: 279 AILSLLAASTGLTLTASSNIVFAEMNWTPAIMQQAEDRAHRIGQENSVLCHYILGEKTLD 338
Query: 645 ESHWQNLNKSLRCVSSATNGKYDALQ 670
+ ++ + + + VS+ +G+ AL+
Sbjct: 339 DLLYKKIEQKIAIVSNILDGESKALK 364
>gi|70944659|ref|XP_742238.1| DNA helicase [Plasmodium chabaudi chabaudi]
gi|56521100|emb|CAH78659.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
Length = 437
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/460 (31%), Positives = 229/460 (49%), Gaps = 62/460 (13%)
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
SKRT KA++ + KR VLLSGTP+L++P +++ Q++ + P L +F
Sbjct: 1 SKRT------KAIVPIIKSAKRCVLLSGTPALNKPSELYEQVSSIIPNLFNYN--EFCDR 52
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL 446
YC K Y ++ ++ EEL++ L T+MIRRLK+ +L +LP K R I + +
Sbjct: 53 YC-YKDKNIYTRKI--EYVGCKHTEELHLFLTNTIMIRRLKKDVLKELPDKLRSKIPIEI 109
Query: 447 KRSEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL----G 498
++E+ + AK N + D N + +D + + I+ +L G
Sbjct: 110 PQNELSEILLYAKKLESKKNININDLDNISLSRFNDFNSNHDNNIDEENITISQLFKMTG 169
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
AK+ +E+++ D D+ K ++F HH V+D + EF+ EK +GF+
Sbjct: 170 YAKVKAIKEYITY---------LIDADI-----KFLLFCHHKLVMDEIDEFLKEKKLGFI 215
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
R+DG T R+ + +FQ +++IAI+ ITA GVGL+ ++A VVF EL P M+Q
Sbjct: 216 RVDGLTPIDKREVYIKNFQSDEKIRIAILSITACGVGLNLTAANTVVFGELYWVPGQMIQ 275
Query: 619 AEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGV 677
AEDRAHR G T +NI+ A++T DE W+ +N+ +++A NG D+L V+ V
Sbjct: 276 AEDRAHRIGTTHDTINIHYLVAQNTIDEVVWKIINRKWNTLTTALNGAEDSLN---VKEV 332
Query: 678 SYLEMSDKTDRGSEDLTLDQVAS--------------SDQFQELMKVPESSEASDFRAIN 723
S K D+ DLT D S S +++ L+ + + D R
Sbjct: 333 S------KFDKFMLDLTNDTNKSYPTSLVNTPKIKRRSSEYKALINNANTKKYPDIRDFF 386
Query: 724 TNDEITA-----KMNDKLLEESKTDHSPTETDDHHNNVSQ 758
DE K D L E+S+ ++SP + D N+ S
Sbjct: 387 KKDEKNTDTERQKSMDMLSEKSRANYSPPKNYDSDNSTSN 426
>gi|414887795|tpg|DAA63809.1| TPA: hypothetical protein ZEAMMB73_058078 [Zea mays]
Length = 618
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 210/411 (51%), Gaps = 60/411 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P L ++PFQ EG+RF L+ GGR LIADEMGLGKTLQAIA+A+C A +L +
Sbjct: 207 RIPPHLESKLMPFQREGIRFVLQHGGRALIADEMGLGKTLQAIAVASCLRDAWPVLAIQ- 265
Query: 252 AILRLSW----AEELERWLPFC---LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
SW E++ LP A + + + HL VISY ++ ++
Sbjct: 266 -----SWLNIPVEDILVVLPHTGGSHKAGFRVAYSNSKGDFHLDGV--FNVISYDVVPKI 318
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ ++++ D+ ++I DESH ++ + + A L V K + +VLLSGTP+LSRP ++
Sbjct: 319 QSTLLDLDFKIVIADESHFMK----NGQAKRTVASLPVLQKAQYVVLLSGTPALSRPIEL 374
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F QI L+P + K+ ++ YC +G F + EEL+ L+K TVMIR
Sbjct: 375 FTQIQALYPTVY-KSVSEYGNIYC--------KGGFFGLYQGASNHEELHNLMKATVMIR 425
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK+ +L QLP KRRQ + L L ++ + +A +T K E DS
Sbjct: 426 RLKKDVLSQLPVKRRQQVFLDLSEKDVKNVRALF----------IELETLKVKIESSDSK 475
Query: 485 ACCRLGKISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+ +YQ + +AK+ ++L +I E K +IF
Sbjct: 476 EMIDSLRFAYQNIVNKIYTDSAVAKIPAVLDFLGT--MIEEG------------CKFLIF 521
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
AHH ++D +++ + +K + ++IDG T RQ+ V FQ +++VK A++
Sbjct: 522 AHHQPMIDAIEKHLLKKKVKCIKIDGKTPLTTRQTLVTDFQNNDDVKAAVM 572
>gi|159479316|ref|XP_001697739.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
gi|158274107|gb|EDO99891.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
Length = 876
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 157/532 (29%), Positives = 248/532 (46%), Gaps = 106/532 (19%)
Query: 189 MIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFISAGSIL 247
++ K+ L + +Q EGV G+R GGR L ADEMGLGKT+Q A+ + +C+ +L
Sbjct: 251 VLPKVDPELWGRLFAYQREGVLAGVRFGGRVLYADEMGLGKTVQQALTLMSCYTEDWPLL 310
Query: 248 VVCPAILRLSWAEELERWLPFCL---PADIHLVFG------------------HRNNPVH 286
++CP LR +W +++WLP L PAD+ V H P
Sbjct: 311 IICPTSLRFAWVAAVQQWLPPHLQPAPADLWQVGAVTDWDRLAAAAGIEPGSDHEEYPRG 370
Query: 287 LTRF-------PRVVVISYTMLHRL--RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
R P + V+SY + ++ + + + +I DE H ++ ++ T +++
Sbjct: 371 GGRAGGGGRLRPHIAVVSYDLATKIAPQHASRAHRYRAIICDECHALK-NRTTQRAQKIG 429
Query: 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI---NMLWPGLLGKAKYDFAKTYCDVKTVQ 394
++ A R VL +GT L+RP ++F Q+ +ML PGLLG + ++ YC V T
Sbjct: 430 PLVRAA---DRAVLCTGTAILNRPIELFTQVTQVDMLKPGLLG-SYTEYGDRYC-VNTAN 484
Query: 395 GYQGQLF----------QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
+ Q Q+++ L EL +L + VM+RR K +L LPPK R + L
Sbjct: 485 TFYQQQQQQHQTPNFPGQEYTGANALGELKAVLGECVMVRRRKDEVLGDLPPKIRSKVPL 544
Query: 445 L------------LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
L+ + V A AA G ++ E + +H S +
Sbjct: 545 QPCEDDLRRVAADLRELKRVLAAAAAGHMSGHEALSARQ-------QHTLSHTHAQAWSA 597
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+Y+ G AKL+ + +L+ ++ G K+++FAHH +VL+G+QE + +
Sbjct: 598 AYRATGPAKLTEAKAFLTR--LLERVSGPC---------KVLVFAHHQEVLNGLQEHLKQ 646
Query: 553 KGIGF----VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ +RIDG+T +R AV +FQ +G Q VVF+E
Sbjct: 647 VRVQLKVMHMRIDGSTPAHERDKAVAAFQR---------------LGPRTPRVQVVVFVE 691
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT-------DESHWQNLNK 653
L QSPSL++QAEDRAHR GQ + V++Y AK T DE W L +
Sbjct: 692 LDQSPSLLVQAEDRAHRVGQAAHVHVYYLMAKGYTLRHAGTLDEQIWAMLER 743
>gi|126667815|ref|ZP_01738782.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
gi|126627763|gb|EAZ98393.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
Length = 877
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 171/610 (28%), Positives = 275/610 (45%), Gaps = 86/610 (14%)
Query: 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEE 261
LP+Q G+ + +R+G LIADE GLGKT+QA+ ++ C + S+L+V PA L+++W E
Sbjct: 305 LPYQKAGIAYAVRKGN-ALIADEPGLGKTIQAVGVSNCVKAIRSVLIVVPATLKINWERE 363
Query: 262 LERWLPFCLPADIHLVFGHRNN------PVHLT-RFPRVVVISYTMLHRLRKSMIEQDWA 314
++W C+ L G N P R P VVVI+Y ++ + + W
Sbjct: 364 WQKW---CVKG---LTTGQVTNRSASSWPTDAEGRSPNVVVINYDLVEAHKARLTRHTWD 417
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK-----RIVLLSGTPSLSRPYDIFHQIN 369
L+IVDE+H ++ K + + +L K R +LL+GTP LSRP +I+ +
Sbjct: 418 LMIVDEAHALKNDKA----KRTQLILGHGKKEPGIPRHRTLLLTGTPILSRPKEIWTLAH 473
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L P + FA YC YQ + + L EL L+ +M+RRLK +
Sbjct: 474 ALDPEYFSN-RMRFALRYC-----AAYQAEHGWNMDGASNLGELQRELRARIMVRRLKAN 527
Query: 430 LLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEK-----DATNDKTPKDSDEHD 481
+L +LPPK RQII L L E K A + D ++ D N+ T + + +
Sbjct: 528 VLSELPPKTRQIIPLENGLATLRETHVLKQAAQALKDIQRERARLDPNNEATYRTAADRL 587
Query: 482 DSGACCRLGKISYQ--ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
++S Q E +AK+ E + + +N S K+I+FAHH
Sbjct: 588 TDMEVAVFEQLSRQRKETALAKIPQVMELV-------------EQALNEGSGKLILFAHH 634
Query: 540 LKVLDGVQE-----FISE---------KGIGFVR------IDGNTLPRDRQSAVHSFQLS 579
+V++ Q+ FI + + IG + + G T RQ+ FQ
Sbjct: 635 REVVEAYQDALNALFIKQAKAQDRETRQRIGTTQPNSLALVYGPTPKGKRQAEADRFQAD 694
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ + + I A GVG+ ++A V+F EL P ++ QAEDRAHR GQ V ++
Sbjct: 695 PKCTVFLGSIGAAGVGITLTAATKVLFGELDWVPGIVSQAEDRAHRIGQLDNVLVWHAVV 754
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTL---- 695
+ D + L + + + SA + + +Q + ++ ++ + G ++ L
Sbjct: 755 DGSIDARMVRRLIEKQKVLDSALDDE-KTIQASSTGSLADCTVATRAKPGYSEVGLAPPL 813
Query: 696 -DQVASSDQFQELM-KVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHH 753
DQ D++ E M V S E +D+ TA+ D S+ D +HH
Sbjct: 814 VDQSFVLDRYAEYMDSVINSGELQSGDQARQHDDQTAQ--DMAQAMSQDDGY-----NHH 866
Query: 754 NNVSQYTGRI 763
N+V RI
Sbjct: 867 NSVDNLPLRI 876
>gi|26340760|dbj|BAC34042.1| unnamed protein product [Mus musculus]
Length = 904
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 172/336 (51%), Gaps = 30/336 (8%)
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
K +L + K +R +LL+GTP+L RP ++F QI L+P G ++AK YC+ Y
Sbjct: 6 KILLPMVQKARRAILLTGTPALGRPEELFMQIEALFPQKFG-TWIEYAKRYCNAHV--RY 62
Query: 397 QGQLFQ-DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAK 455
G+ Q D L EL+ LL +MIRRLK +L QLPPK RQ I L
Sbjct: 63 FGKRRQWDCRGASNLSELHQLLND-IMIRRLKSEVLSQLPPKVRQRIPFDL-------PP 114
Query: 456 AAVGVINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514
AAV +N S E+ + P G R+ +++ IAK ++++ +
Sbjct: 115 AAVKELNASFEEWQKLMRAPNSGAMETVMGLMTRM----FKQTAIAKAGAVKDYIKM--- 167
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
+ ++D S K ++FAHHL +L E + E ++RIDG+ +R V+
Sbjct: 168 LLQND----------SLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVN 217
Query: 575 SFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
FQ + ++AI+ I A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI
Sbjct: 218 QFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNI 277
Query: 635 YIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+ A T D W LN+ + S NG+ + LQ
Sbjct: 278 HYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKLQ 313
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 148/361 (40%), Gaps = 80/361 (22%)
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQ--FQELMKVPESSEASDFRAINTNDEITAKMN 733
G ++L+ ++K D ED + + SDQ + + PE EA E +A
Sbjct: 484 GRNHLQDNNKND---EDAAQESTSKSDQAGLECERQCPERLEA----------EQSANSK 530
Query: 734 DKLLEESKTDHSPTETDDHHNN--------------VSQYTGRIHLYSCVPGTDSRPRPL 779
++ LE D P++ + N S+ T RIHLY+ +P+
Sbjct: 531 EEALEGGGEDRLPSQPEIGQLNNSGTLPVRETFMFCASRNTDRIHLYT------KDGKPM 584
Query: 780 FESFRPEE--LDNTEHISGC--LKENPGYRHAIQAFINEWNALRPIERTKLLGKPLQLPL 835
+F P + LD E + LK+N R I F+ EW++L +++ ++L K QL
Sbjct: 585 NCNFIPLDIKLDLWEDLPATFQLKQN---RSLILRFVREWSSLTAMKQ-RVLRKSGQLFC 640
Query: 836 SVELC----------------YL-KETINHSSGGLLK--GGSKRRTTPSLEISHPLPSGA 876
S L Y+ KE + +S +K GG R T + +
Sbjct: 641 SPLLASEEITKQQAKENNTRRYITKEDVAKASMNKVKSDGGHIRLIT-----KESMTQDS 695
Query: 877 EWKKV--------RICSGSRKKE----KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEY 923
KK+ C E K Y Q PLC CQ TC+ + A
Sbjct: 696 SLKKIDSACVPSLNPCPADLTVEPSPSKGYIQAVDKEGRPLCLRCQHPTCQPEQTAKASA 755
Query: 924 FEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
++ FC+L C EE+ +R++ +LR ++F EHGVC +C +D +L ++ R+
Sbjct: 756 WDSRFCSLKCQEEFWIRSNNSYLRAQVFATEHGVCQHCGVDAQELFLRMRDAPKSHRKSL 815
Query: 984 I 984
+
Sbjct: 816 L 816
>gi|71755757|ref|XP_828793.1| SNF2 DNA repair protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834179|gb|EAN79681.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 952
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 149/253 (58%), Gaps = 8/253 (3%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LP L+ + Q++G+ L GGR + ADEMG+GKTLQAI A ++A L+VCPA
Sbjct: 175 LPPKLMAALHRHQVDGICKALSFGGRAMFADEMGVGKTLQAIGTLAA-LNAFPALIVCPA 233
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
LR WA+ELE+WL L D V ++ + + P+VVV S+ M+ L M +
Sbjct: 234 ALRHMWADELEKWLMDVLNMDDIRVITSSSDFLSRSDEPKVVVTSFHMVSLLANHMKSRQ 293
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVL-DVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W+ L+VDESH + S S +L ++ + K +LL+GTPSLS P+D+F+Q++ +
Sbjct: 294 WSSLVVDESHILHTSVDASCDAHYTTLLCELGRRTKYCLLLTGTPSLSTPFDLFNQVDTV 353
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG ++++FA YC ++ F+ F + R EL+ LL T MIRRLK L
Sbjct: 354 CPGLLGSSRFEFALRYCRIEF-----SPYFRTF-ECTRSTELHSLLNATCMIRRLKSETL 407
Query: 432 VQLPPKRRQIIRL 444
V LP K+R I+R+
Sbjct: 408 VDLPTKQRVILRI 420
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+ K+++FAHHL +LD + ++++K + ++RIDG T R + F +V +A++G
Sbjct: 459 KHGKIVLFAHHLNLLDCLTTYVNDKKVTWIRIDGGTPMNSRVELLSRFN-DGDVSVALVG 517
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI-YIFCAKDTTDESH 647
ITA VG+ + A +F ELP M QAEDR HR GQ + V + YI D +
Sbjct: 518 ITACAVGVRLTGASCALFAELPPDIGWMQQAEDRLHRPGQKNHVILYYIISTGSFFDGAQ 577
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVS 678
+ L++S + V T+G +L + G +
Sbjct: 578 FSRLSRSFQAVRRITDGVKLSLDASYLSGTA 608
>gi|313212367|emb|CBY36356.1| unnamed protein product [Oikopleura dioica]
Length = 534
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 204/403 (50%), Gaps = 49/403 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P+ LL + PFQ EGV +RRGG+ ++ADEMGLGKT+QA+A+AA + +L+V P+
Sbjct: 156 VPEKLLTALYPFQREGVDQIIRRGGKAILADEMGLGKTIQALALAAHYRKDWPLLIVAPS 215
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML--------HRL 304
++ +W EL W+ + D LV + + +VV+ SY M H
Sbjct: 216 SVKFNWLIELSNWIGEIVSKDSILVLYTGKDVAKIRNTLKVVITSYEMTTKIVNSGKHMT 275
Query: 305 RKSMIEQD------WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
S+ ++ + ++I+DESH++ +T+ + K+ + R++ LSGTP+L
Sbjct: 276 DTSIFSEENDRKSRFRMVILDESHYI----KTATAQRAKSTKLICNGAARVLCLSGTPAL 331
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
++P ++ QI ++ L ++ F + YC Y+ + ++S L+ELN++L
Sbjct: 332 AKPIELHSQIEVVSKDLFSN-RHSFGQRYC-----AAYKSKYGWNYSGSDNLQELNLILS 385
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA---------KAAVGVINDSEKDAT 469
+T+MIRRLK +L LPPK R+II + + S ++ K + + K+
Sbjct: 386 KTIMIRRLKSQVLKDLPPKIRKIIYMKVTDSPMIKKCNKIFQNIQKLPAQMTKNDFKEME 445
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
+K +E D S + Y G AK+ E+L I + ES+
Sbjct: 446 LEKLSDKFEEADSSPLT--IWNKWYCATGDAKIKAVSEYL-IEKLENESE---------- 492
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIG-FVRIDGNTLPRDRQS 571
K+I+FAHH V+D +++ IS K G ++I G+T DR +
Sbjct: 493 --KIIVFAHHRAVIDSLEQNISPKIKGNLIKITGSTRSDDRTT 533
>gi|21754605|dbj|BAC04536.1| unnamed protein product [Homo sapiens]
Length = 368
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 40/378 (10%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAI I + +L+V P+ LR W EE+E+W+P P +I+++
Sbjct: 1 MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVI--QNKTD 58
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
V +V V+ Y +L K++I+ Q++ ++IVDESH+++ T + +L
Sbjct: 59 VRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRS----RILL 114
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ K +R +LL+GTP+L RP ++F QI L+P G+ D+AK YC+ Y G+
Sbjct: 115 PIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWT-DYAKRYCNAHI--RYFGKR 171
Query: 401 FQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
Q +G L EL+ LL +MIRRLK +L QLPPK RQ I L AA
Sbjct: 172 PQWDCRGASNLNELHQLLSD-IMIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAK 223
Query: 460 VINDS-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAES 518
+N S E+ +TP G R+ +++ IAK ++++ + + ++
Sbjct: 224 ELNTSFEEWEKIMRTPNSGAMETVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQN 276
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
D S K ++FAHHL +L E + E + RIDG+ +R V+ FQ
Sbjct: 277 D----------SLKFLVFAHHLSMLQACTEAVIENKTRYTRIDGSVSSSERIHLVNQFQK 326
Query: 579 SNEVKIAIIGITAGGVGL 596
+ ++AI+ I A G L
Sbjct: 327 DPDTRVAILSIQAAGQDL 344
>gi|189036176|gb|ACD75438.1| AMDV4_9 [uncultured virus]
Length = 542
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 220/462 (47%), Gaps = 67/462 (14%)
Query: 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEE 261
LPFQ G+ F + L+ADEMGLGKT++ I S+L++CPA L+++W E
Sbjct: 102 LPFQKAGIDF-ISSQKNVLVADEMGLGKTIEVIGYINLNPDVQSVLIICPASLKMNWEAE 160
Query: 262 LERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDES 321
+++WL D+ ++ G + +T + V ++ +L Q W LL++DES
Sbjct: 161 MKKWL--VRSYDLTILNGDGLKSITITNYESVKK-NFDLLR-------SQTWDLLVLDES 210
Query: 322 HHVRCSKR--------------TSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
H+++ K TS+ + +K + D A K+ +LL+GTP L+RP ++F
Sbjct: 211 HYIKNYKAQRTKFITGFYEGSDTSDTSKTWIKGLKDYA---KQKILLTGTPVLNRPIELF 267
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
Q+ +L +GK +F +Y ++ G G + LEEL L+ T MIRR
Sbjct: 268 TQLRVL-GNEMGKNFMEFRNSYIEM----GRYGPI-----GSKNLEELQRKLRTTCMIRR 317
Query: 426 LKQHLLVQLPPKRRQIIRL---LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
K+ +L++LP K RQII L +L S++ + + + + + T
Sbjct: 318 EKKDVLLELPDKMRQIITLPSSILSNSDMENERKVIEYLAQNWDMGT------------- 364
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
G ++E IAK+ I VI + +V +K+++FAHH V
Sbjct: 365 -GKLRNSEGFPFEE--IAKIRHSSAIKKIPYVIEHIE-----NVLENEDKIVVFAHHHDV 416
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
+D + E K I V GN +R AV+ FQ KI I I A GVG+ +++
Sbjct: 417 VDAIYEKF--KDISVVAT-GNESLNERNDAVNKFQNDPSCKIFIGSIQAMGVGITLTASS 473
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
V+F E+ P + QAEDR HR GQ S V + D+ D
Sbjct: 474 TVIFTEIEWRPGDLTQAEDRLHRIGQKSTVLVQYLVVNDSID 515
>gi|299472392|emb|CBN77580.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 991
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 152/252 (60%), Gaps = 5/252 (1%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P+ + + PFQ +GV F L++ GR +IADEMGLGKT+QAI AA + S +L+V P+
Sbjct: 158 VPECIRKHLAPFQKQGVEFVLKKEGRAMIADEMGLGKTIQAICCAAAYESEWPLLIVSPS 217
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
R W EL +WL +V ++ +VV+ISY +++R+++ + +
Sbjct: 218 SARYHWQHELLKWLDEDSITKKQIVVVSKSKQDLNRGVTKVVIISYELVNRMKEELDLFN 277
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ +++ DE H+++ + +A++ +A K +R +LLSGTP+LSRP ++F Q+N+L
Sbjct: 278 FGVVVCDECHYLKNQRAA----RTRAIVPLATKARRAILLSGTPALSRPSELFTQLNLLS 333
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
+ DF K YC K +G +G+ DFS + EL+ LL+ TVM+RRLK+++L
Sbjct: 334 AATWASFR-DFGKRYCAGKKGKGKKGKFGADFSGASHIAELHALLRATVMVRRLKKNILK 392
Query: 433 QLPPKRRQIIRL 444
LPPK+R ++ +
Sbjct: 393 HLPPKQRSLVEV 404
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKG-IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
K+++FAHH VLD +++ + G + ++RIDG T P+DRQ V +FQ + V++A++G
Sbjct: 580 GGKILVFAHHRNVLDALEQSVVRTGRVEYIRIDGRTKPKDRQDLVDTFQSNPSVRVALLG 639
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+TA G+G+ ++A VVF EL +P+ +LQAEDR HR GQ + V + AK + D++ W
Sbjct: 640 LTAAGIGITLTAASRVVFAELYWTPAQLLQAEDRCHRIGQATVVKVQYLVAKGSLDDALW 699
Query: 649 QNLNKSLRCVSSATNGKYDA 668
+ + ++ + G+ +A
Sbjct: 700 PLIQEKIKLLGEMVEGEGEA 719
>gi|120536993|ref|YP_957051.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
gi|120326827|gb|ABM21136.1| helicase domain protein [Marinobacter aquaeolei VT8]
Length = 906
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 143/493 (29%), Positives = 225/493 (45%), Gaps = 52/493 (10%)
Query: 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEE 261
LP+Q G+ + L+ G LIADE GLGKT+QAI ++ ILV+ PA L+++W E
Sbjct: 358 LPYQKAGIAYALQLGN-ALIADEPGLGKTIQAIGVSNALPEVRRILVIVPASLKINWQRE 416
Query: 262 LERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDES 321
E+W L + V R + + P VVVI++ ++ + + + EQ W LLI+DE+
Sbjct: 417 FEKWDTKAL--SVSRVRDGRPDSWP-SGTPEVVVINFDLVEQHYERLTEQPWDLLIIDEA 473
Query: 322 HHVRC--SKRTSEPEEVKAVLDVAAKVKRI--------VLLSGTPSLSRPYDIFHQINML 371
H ++ +KRT KA+L + KR + L+GTP L+RP +I+ + L
Sbjct: 474 HALKNEDAKRT------KAILGHGSGEKRTPGIPANRKLFLTGTPILNRPAEIWPLAHAL 527
Query: 372 WPGLLGKAKYDFAKTYCDV-KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P K+ F YC+ KT G+ + L ELN L+ +M+RR K +
Sbjct: 528 DPDFFAD-KHRFEIRYCNAHKTEFGW------NTRGSSNLPELNRQLRARIMVRRRKAQV 580
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACCR 488
L LPPK RQII L R + + + +A +K E++ + A
Sbjct: 581 LKDLPPKTRQIIE--LDRPALADHNGQYRRLEQATATLEALFEKRSALRTEYEHAQAETA 638
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR----------SNKMIIFAH 538
L + + + +E + ++E + P+ + K+I+F H
Sbjct: 639 LSSVQRTRYRLQAENLVKEARTAFHQMSEVRKETALSKVPQVVELAKTALANGKIILFCH 698
Query: 539 HLKVLDGV-----QEFISEKG-----IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
H +V++ F + G + G T RQ+ FQ + K+ +
Sbjct: 699 HAEVVEAYVDALNHHFKRQAGKRGTPATVAVVTGKTPNEQRQAQADRFQSDEQCKVFVGT 758
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
I A GVGL ++AQ V+F EL P M QAEDRAHR GQ V +Y + + D
Sbjct: 759 IQAAGVGLTLTAAQTVLFAELDWVPGNMNQAEDRAHRIGQLDHVLVYHTAVEGSIDTQMI 818
Query: 649 QNLNKSLRCVSSA 661
+ L + + + A
Sbjct: 819 RRLIEKQQTIDEA 831
>gi|71409128|ref|XP_806927.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70870808|gb|EAN85076.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
Length = 697
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/269 (39%), Positives = 149/269 (55%), Gaps = 18/269 (6%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
P HLS+ LP LL + Q++G+ L GR L ADEMG+GKTLQAI
Sbjct: 168 PFHLSE--------LLPARLLSALHQHQIDGICKALAFCGRALFADEMGVGKTLQAIGTV 219
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPRVVVI 296
A + A L+VCPA LR W EE+ERWL + DIH V + + + P+VV+
Sbjct: 220 AA-LHAFPTLIVCPAALRHMWVEEVERWLAELIELEDIH-VITSSSQFLSVNDAPKVVIT 277
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCS-KRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY M L M ++W ++VDESH + + +S+ V D+ + K +LLSGT
Sbjct: 278 SYHMASILATQMKSREWCCVVVDESHTLHTTLDASSDAHYTSLVCDLGKRSKYCLLLSGT 337
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
PSL+ P+D+F+QI+ L GLLG+ +Y+FA YC + ++ + VR EL+
Sbjct: 338 PSLASPFDLFNQIDTLSDGLLGETRYEFALRYCRTEFSPHFK------VCECVRNVELHS 391
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
LL T MIRRLK L+ LP K+R + R+
Sbjct: 392 LLVATCMIRRLKSETLIDLPSKQRILFRV 420
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++FAHH+K+LD + + + + ++RIDGNT R +++ F + ++AIIGITA
Sbjct: 462 KVVLFAHHIKLLDCLMVHVGKLKVSWIRIDGNTPIYSRAASLSRFN-QGDARVAIIGITA 520
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQN 650
VG+ ++A +F ELP + M QAEDR HR GQ V YI A D +
Sbjct: 521 CAVGIQLTAASCALFAELPPDATWMQQAEDRLHRPGQEKHVVFFYIVGANSFFDSERFAR 580
Query: 651 LNKSLRCVSSATNG 664
L +S V T+G
Sbjct: 581 LCRSFHSVRRTTDG 594
>gi|323448985|gb|EGB04877.1| hypothetical protein AURANDRAFT_1482 [Aureococcus anophagefferens]
Length = 411
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 214/456 (46%), Gaps = 85/456 (18%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+LP+Q+E V F + RGGR + DEMGLGKT QA+ + + + +LVV P + W +
Sbjct: 1 LLPYQVEAVGFAMERGGRVFLNDEMGLGKTAQALTLMRQYPNDWPVLVVAPKAVLTQWEQ 60
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE---QDWALLI 317
E+ RW+ +++ + N ++ + +Y + R W +I
Sbjct: 61 EVHRWIA----SNVQTILTSWNYD------SQICICTYDIFRANRTLQAPPGGAQWRCVI 110
Query: 318 VDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
+DESH +C +++ K ++ V + + LL+GTP+ + D++ Q+ M+ P
Sbjct: 111 LDESH--KCKDPSTK--RAKEIMPVVMRADHVALLTGTPAPAGANDLWSQLKMVLP---- 162
Query: 378 KAKYD-------FAKTYC-------DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
KA D + + YC ++T++ + G F+ G + E+N LLK T+ +
Sbjct: 163 KAAQDHMPFHNQWQQRYCVCKEIYTGLRTIENWTG-----FNPGTQ-TEVNGLLK-TMQM 215
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE---H 480
RRLK +L QLP K+R ++ L +A+ G N + + ++ DE
Sbjct: 216 RRLKTEVLTQLPEKQRHVLYL----------EASPGAANKASGLKAKFEALRNKDEILAA 265
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
D C EW+ H ++D + K+I+FAHH
Sbjct: 266 DQEPPCV-------------------EWVKEHFFEDDND----------TQKIIVFAHHR 296
Query: 541 KVLDGVQE-FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+VLD ++ F KG +R+DG+ R+ + F+ ++A++ + GL+ +
Sbjct: 297 EVLDRLEAGFQKIKGATTIRVDGSVPGAQREERIKRFKTDATCRVALLSMGTCSNGLNMT 356
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
A ++F E+ SP+ +QAEDR HR QT+A NIY
Sbjct: 357 EASTILFAEMTWSPTDHMQAEDRIHRVSQTNACNIY 392
>gi|226503503|ref|NP_001144507.1| uncharacterized protein LOC100277497 [Zea mays]
gi|195643144|gb|ACG41040.1| hypothetical protein [Zea mays]
Length = 252
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 136/257 (52%), Gaps = 33/257 (12%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQ----------QSATTASNRQDA----WRLSKCRK 46
MEITEEQR+RAEANRLAAL KRK A+T A WRL+KC +
Sbjct: 1 MEITEEQRRRAEANRLAALEKRKRYAEAAAATAFPTSGASTFPAYDTAAAAEWRLAKCPR 60
Query: 47 FSTEPTHFP-------KSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGE 99
+ P S P + Q P F+V LE+C PD F V + +EG YPGE
Sbjct: 61 IAPPARQLPFVPLPPRPSPPPLPPTPPQPPVGFQVVLEVCGPDEFWVAVVPVEGRAYPGE 120
Query: 100 EECLRRLGQWLSDVMPSHYTQNNSGGKAC----VYKLRDYNPVLTCLKNSAGIEVEGIPW 155
ECL + L+ Y+ S ++ V+KL DY VL CLK G V+ IP
Sbjct: 121 AECLGAVQDCLAAASVVQYSATQSLSQSAHLRPVFKLVDYGVVLKCLKKLPGASVQEIPS 180
Query: 156 VTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR 215
T +++ + +W SDE V E++ KLP+ + D +LPFQLEGV FGLRR
Sbjct: 181 STKRIIQNIPR-YHVQKWA-------SDEEVHELLKKLPQQIKDALLPFQLEGVMFGLRR 232
Query: 216 GGRCLIADEMGLGKTLQ 232
GRCLIADEMGLGKTLQ
Sbjct: 233 RGRCLIADEMGLGKTLQ 249
>gi|407424939|gb|EKF39207.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi marinkellei]
Length = 1001
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 151/273 (55%), Gaps = 12/273 (4%)
Query: 176 CRPEHLSDEVVD--EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
CR S V + + LP LL + Q++G+ L GGR L ADEMG+GKTLQA
Sbjct: 205 CREVAFSSRVSNPFHLTELLPARLLSALHQHQIDGICKALAFGGRALFADEMGVGKTLQA 264
Query: 234 IAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPA-DIHLVFGHRNNPVHLTRFPR 292
I A + A L+VCPA LR W EE+E+WL + DIH++ + + + P+
Sbjct: 265 IGTVAA-LHAFPTLIVCPAALRHMWVEEVEKWLTELIELEDIHVI-TSSSQFLSVNDAPK 322
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS-EPEEVKAVLDVAAKVKRIVL 351
VV+ SY M L M ++W ++VDESH + + S + V ++ + K +L
Sbjct: 323 VVITSYHMASILATQMKSREWCCVVVDESHTLHTTLDVSNDAHYTSLVCNLGKRSKYCLL 382
Query: 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
LSGTPSL+ P+D+F+QI+ L GLLG+ +Y+FA YC + ++ + VR
Sbjct: 383 LSGTPSLASPFDLFNQIDTLSGGLLGETRYEFALQYCRTEFSPHFK------VCECVRNV 436
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
E++ LL T MIRRLK L+ LP K+R + R+
Sbjct: 437 EVHSLLVATCMIRRLKSETLIDLPSKQRILFRV 469
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++FAHH K+LD + + ++ + ++RIDG+T R + + F + ++AIIGITA
Sbjct: 511 KVVLFAHHTKLLDILMVHVRKQKVSWIRIDGSTPVYSRAALLSRFN-QGDARVAIIGITA 569
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQN 650
VG+ ++A +F ELP + M QAEDR HR GQ V YI A D +
Sbjct: 570 CAVGIHLTAASCALFAELPPDATWMQQAEDRLHRPGQEKHVVFFYIVGANSFFDSERFAR 629
Query: 651 LNKSLRCVSSATNGKYDAL 669
L +S + V T+G +L
Sbjct: 630 LCRSFQSVRRTTDGVSSSL 648
Score = 39.7 bits (91), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 904 PLCKLCQKTCKSKNAKN------AEYFEDLFCNLDCYEEYRLRTSGRFLREELFRIEHGV 957
PLC C+ S + + E D+FC+ C + ++ SG R L + G+
Sbjct: 810 PLCLECESIFPSLFSPSPGDVVCIERDTDMFCSGRCRAAFYIKRSGSVARRSLREADKGI 869
Query: 958 CTNCQLDCHKLVKHIKPLSLEQRRKYIV 985
C +CQ+DC L + + + R+ I+
Sbjct: 870 CFHCQVDCEMLSSLLAAATTWKEREAIL 897
>gi|414887451|tpg|DAA63465.1| TPA: hypothetical protein ZEAMMB73_817940 [Zea mays]
Length = 252
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 136/257 (52%), Gaps = 33/257 (12%)
Query: 1 MEITEEQRQRAEANRLAALAKRKALQ----------QSATTASNRQDA----WRLSKCRK 46
MEITEEQR+RAEANRLAAL KRK A+T A WRL+KC +
Sbjct: 1 MEITEEQRRRAEANRLAALEKRKRYAEAAAATAFPTSGASTFPAYDTAAAAEWRLAKCPR 60
Query: 47 FSTEPTHFP-------KSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGE 99
+ P S P + Q P F+V LE+C PD F V + +EG YPGE
Sbjct: 61 IAPPARQLPFVPLPPRPSPPPLPPTPPQPPVGFQVVLEVCGPDEFWVAVVPVEGRAYPGE 120
Query: 100 EECLRRLGQWLSDVMPSHYTQNNSGGKAC----VYKLRDYNPVLTCLKNSAGIEVEGIPW 155
ECL + L+ Y+ S ++ V+KL DY VL CLK G V+ IP
Sbjct: 121 AECLGAVQDCLAAASVVQYSATQSLSQSTHLRPVFKLVDYGVVLKCLKKLPGASVQEIPS 180
Query: 156 VTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR 215
T +++ + +W SDE V E++ KLP+ + D +LPFQLEGV FGLRR
Sbjct: 181 STKRIIQNIPR-YHVQKWA-------SDEEVHELLKKLPQQIKDALLPFQLEGVMFGLRR 232
Query: 216 GGRCLIADEMGLGKTLQ 232
GRCLIADEMGLGKTLQ
Sbjct: 233 RGRCLIADEMGLGKTLQ 249
>gi|442759453|gb|JAA71885.1| Putative chromatin remodeling protein harp/smarcal1 dead-box
superfamily [Ixodes ricinus]
Length = 561
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 16/249 (6%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L +LPFQ EGV +RR GR LIAD+MGLGKT+Q+IA+A F +LVV P+ +R
Sbjct: 207 LEQALLPFQKEGVCTAIRRNGRLLIADDMGLGKTIQSIAVACYFREEWPVLVVAPSSVRF 266
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
+W E W+P + ++ + + + +VV+ SY +L R + I + ++
Sbjct: 267 TWKEAFLHWMPSLRDDQVTVLVTGSDK---VDKDHQVVITSYDLLSR-KVDDIRGKFQVV 322
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DESH ++ K KA V AK KR++LL+GTP+LSRP +++ QI + P
Sbjct: 323 ILDESHFIKSHKAA----RTKACQKVIAKAKRVLLLTGTPALSRPIELYTQICAVRPKCF 378
Query: 377 GKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+ ++ YC+ K Q G+ D+S ++EL +LL++++MIRRLK +L QLP
Sbjct: 379 PSIQ-EYGIRYCNGKVTQWGW------DYSGSSNMQELQLLLEKSIMIRRLKSDVLSQLP 431
Query: 436 PKRRQIIRL 444
K+RQ++ L
Sbjct: 432 AKQRQVVVL 440
>gi|147865787|emb|CAN81153.1| hypothetical protein VITISV_020819 [Vitis vinifera]
Length = 845
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 151/262 (57%), Gaps = 19/262 (7%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
++P + +LPFQ +G+RF L+ GGR L+ADEMGLGKTLQAIA+ C + +LV+ P
Sbjct: 250 RIPSYIETKLLPFQRDGIRFVLQHGGRVLLADEMGLGKTLQAIAVTTCVRDSWPVLVLTP 309
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+ LRL WA + +V + +HL +ISY ++ +L+K + E
Sbjct: 310 SSLRLHWASVVLSQWSGSNRGGFRIVPSNTKGTIHLDGV--FNIISYDVVLKLQKILAES 367
Query: 312 DWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
++ ++I DESH ++ +KRTS A L V K + +LLSGTP+LSRP ++F Q+
Sbjct: 368 EFKVVIADESHFLKNAQAKRTS------ASLPVLQKAQYTILLSGTPALSRPIELFKQLE 421
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L+P + + +++ YC +G +F + EEL+ L+K TV+IRRLK+
Sbjct: 422 ALYPDVY-RNVHEYGNRYC--------KGGVFGMYQGASNHEELHNLMKATVLIRRLKKD 472
Query: 430 LLVQLPPKRRQIIRLLLKRSEI 451
+L +LP KRRQ + L L ++
Sbjct: 473 VLSELPVKRRQQVFLDLDEKDM 494
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 35/139 (25%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K +IFAHH ++D + +F+ ++ I A
Sbjct: 702 KFLIFAHHQPMIDSIFQFL-----------------------------------VLSIKA 726
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GGVGL ++A V+F EL +P ++QAEDR HR GQ S+VNI+ A DT D+ W +
Sbjct: 727 GGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVV 786
Query: 652 NKSLRCVSSATNGKYDALQ 670
L + +G + L+
Sbjct: 787 QSKLENLGQMLDGHENTLE 805
>gi|290984089|ref|XP_002674760.1| predicted protein [Naegleria gruberi]
gi|284088352|gb|EFC42016.1| predicted protein [Naegleria gruberi]
Length = 566
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 152/555 (27%), Positives = 237/555 (42%), Gaps = 101/555 (18%)
Query: 91 IEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCL-KNSAGIE 149
IE V P +EE + ++L D P N+ + DY+ +L + +
Sbjct: 62 IEHEVLPKDEE--QEKDEYLQD-EPIEKKDNSKAPPVLYFSYYDYDEILRFFTEEHEDVS 118
Query: 150 VEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGV 209
E IP V++ + I + + + D + +LP +L + ILPFQ EG+
Sbjct: 119 FEPIPPFVFQVLDHYENQIKSFKNKSKKSPKDYD-----LSLRLPSNLYNNILPFQKEGI 173
Query: 210 RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWL--- 266
+ + R GR ++ DEMGLGKTLQA+ IA+ + +L++ P L +W EL W+
Sbjct: 174 EYAISRDGRVMLCDEMGLGKTLQALGIASFYPKEWPMLIIGPCSLHNNWRRELNTWIDAE 233
Query: 267 ------------------PFCLPAD-----IHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
P+ D ++ R NP V +ISY + +
Sbjct: 234 WLKKHMGKEFNFTGDSLDPYICIVDSSQGLAKVIEETRENPKKYL----VYIISYDLASK 289
Query: 304 LRKSMIEQ------DWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+ D++++I DESH ++ SKRT + ++ + KR+VL+SGT
Sbjct: 290 NAEDENSDAVKWLLDFSIIITDESHMLKNDGSKRT------QNIIPLLRSAKRLVLISGT 343
Query: 356 PSLSRPYDIFHQINMLWPG----LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411
S SRP ++F Q+ L G K +F YCD+KT + G D+ L
Sbjct: 344 ASPSRPIELFTQMKALLCGPKSKKTLLKKTEFGYRYCDLKT-NFFTGA---DYRGNRFLS 399
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
ELN+LL +++MIRRLK+ +L QLPPKRR + L L +I + N +
Sbjct: 400 ELNLLLSRSIMIRRLKRDVLTQLPPKRRYLTYLSLPDEDIGPHRLTFENFNQRK------ 453
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID--VNPR 529
G R + L L+ IA+ A +
Sbjct: 454 ------------GKNLRFDPNDIEILQKFNLTA----------IAKQKTVARYARYTFKK 491
Query: 530 SNKMIIFAHHLKVLDGVQEFISE----------KGIGFVRIDGNTLPRDRQSAVHSFQLS 579
K IIFAHH V++ ++E I + K + FVRIDG T R + F+
Sbjct: 492 GEKFIIFAHHRSVMNAIEEEIKKEIEEVEKNEGKKLKFVRIDGETPVEQRHAISQEFRED 551
Query: 580 NEVKIAIIGITAGGV 594
+VK+AI+ I G+
Sbjct: 552 PDVKVAILSIAVAGM 566
>gi|307136203|gb|ADN34041.1| chromatin remodelling complex ATPase chain isw-1 [Cucumis melo
subsp. melo]
Length = 385
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 179/363 (49%), Gaps = 54/363 (14%)
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ ++I DESH ++ ++ + A + V K + +LLSGTP+LSRP ++ Q+ L+
Sbjct: 38 YQVVIADESHFMK----NAQAKRTVACVPVIQKAQYAILLSGTPALSRPIELLKQLEALY 93
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P + K +++ YC T YQG S V EL+ L+K T+MIRRLK+ +L
Sbjct: 94 PNVY-KNVHEYGNRYCKGGTFGLYQGA-----SNHV---ELHNLMKATLMIRRLKKDVLS 144
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+LP KRRQ + L L +I +A E + K E +S +
Sbjct: 145 ELPLKRRQQVFLDLAEKDIREIRALF-----CELEVVKGKIKACRSEEVES--------L 191
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+Q+ + I+ AE+ A VL+ ++ I +
Sbjct: 192 KFQQKNLIN--------KIYTDSAEAKIPA-------------------VLNYLETVIEK 224
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
K + +RIDG T P RQ+ V FQ + + A++ I AGGVGL ++A V+F EL +
Sbjct: 225 KKVNCIRIDGGTPPAMRQALVSDFQQKDSIMAAVLSIKAGGVGLTLTAASTVIFTELSWT 284
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEI 672
P ++QAEDRAHR GQ S+VNI+ A DT D+ W + L + +G+ + L E+
Sbjct: 285 PGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEENTL-EV 343
Query: 673 AVE 675
AV+
Sbjct: 344 AVK 346
>gi|224009872|ref|XP_002293894.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970566|gb|EED88903.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 718
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 221/473 (46%), Gaps = 59/473 (12%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI-AIAACFI------SAGSILVVCPAI 253
+ PFQ GV L R L+AD+MGLGKT+Q+I AI + F S +L++CP
Sbjct: 42 LFPFQEVGVA-RLVSDRRLLLADDMGLGKTVQSISAINSLFCKGELSPSTFRVLIICPKS 100
Query: 254 LRLSWAEELERWLP---FCLPADIHLVFGHRNNPVHL-TRFPRVVVISYTMLHRLRKSMI 309
+ W +ELE W+ L +H+V +P+ + F + +I+Y + HR R +
Sbjct: 101 VVSVWVDELEEWIDDRYVSLEHSLHVVSAGIADPLDVDASFGTIQIINYDICHRHRDILQ 160
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTPSLSRPYDI 364
+ +LI DE+H+++ + + + A+L + K K I LSGTP L+R
Sbjct: 161 NVPFDVLICDEAHYLK----SPQTQRTDAILGIKEKSKGIQSRYTWFLSGTPILNR---- 212
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+N ++P L K + Y K G + + V L +L ++L+ + ++R
Sbjct: 213 ---LNEIYPLLFAINKDKWNSYYAFKKKYAG-------SYDEVVNLGQLKLMLRPS-LLR 261
Query: 425 RLKQHLLVQLPPKRRQIIRLL----LKRSEIVSAKAAVGV------INDSEKDATN-DKT 473
R K +L LPPK ++ L +K E A + G+ I DS D ++ K
Sbjct: 262 RKKVDVLKDLPPKLHSVVSLEGSEGVKEREQEFAFESYGMELNVAQIKDSAVDISSLGKF 321
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
+++ + G L G A LS + SI + K+
Sbjct: 322 GENASSLKEYGIGTYLK-------GTALLSALAKVRSITSSFKLEPSVQLLKQYIMCEKV 374
Query: 534 IIFAHHLK-VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++FAHH + ++D V+ F G V I G + R AV FQ ++ I I A
Sbjct: 375 VVFAHHRQLIMDLVEAF----GDSCVHIIGGMDAKSRAEAVQRFQNDASCRLFIGSIRAA 430
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GVGL +++ +VVFLEL SPS+M QAEDR HR GQ +V + F K + DE
Sbjct: 431 GVGLTLTASSHVVFLELDWSPSIMTQAEDRCHRVGQQDSVLVEYFVFKGSLDE 483
>gi|410969384|ref|XP_003991176.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1,
partial [Felis catus]
Length = 737
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 184/333 (55%), Gaps = 25/333 (7%)
Query: 149 EVEGIPWVTLNVVEK---LSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQ 205
+V +P V L+ + K L+ + + +PC PE + + + + KL SLL PFQ
Sbjct: 387 QVRCLPQVQLDPLPKTLTLAFASQLEKTSPCVPETIPEADLSGVDSKLVSSLL----PFQ 442
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERW 265
GV F + + GR L+AD+MGLGKT+QAI IAA + +LVV P+ +R +W + RW
Sbjct: 443 RVGVNFAIAKRGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRW 502
Query: 266 LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR 325
LP P I++V ++ LT V ++S+ +L +L K + + + ++I+DESH ++
Sbjct: 503 LPSLSPDRINVVVTGKD---RLTAG-LVNIVSFDLLSKLEKQL-KTPFKVVIIDESHFLK 557
Query: 326 CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAK 385
K +A + + KR++LLSGTP++SRP +++ QI + P + + F
Sbjct: 558 NIKTA----RCRAAMPILKVAKRVILLSGTPAMSRPAELYTQIIGVRPTFFPQF-HAFGL 612
Query: 386 TYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
YCD K Q D+S L EL +LL++ VM+RRLK +L QLP K+R+++ +
Sbjct: 613 RYCDAK-----QQPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLAQLPAKQRKMVVIA 667
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
R +S KA + +++ T +KTP S+
Sbjct: 668 PGR---ISTKARAALDAAAKEMTTKEKTPVRSE 697
>gi|86170545|ref|XP_966036.1| DNA helicase, putative [Plasmodium falciparum 3D7]
gi|46362278|emb|CAG25216.1| DNA helicase, putative [Plasmodium falciparum 3D7]
Length = 1712
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 147/262 (56%), Gaps = 10/262 (3%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
++E+ KLP + VIL +QL+ + F ++ GR LIADEMGLGKTLQAI+I F
Sbjct: 683 LNEIKKKLPIRIQKVILTYQLQAIYFFFKKRGRILIADEMGLGKTLQAISIFY-FYHLYP 741
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+L++ PA L+++W E+E++LP P ++ ++ + P + + +++++S+ + +L
Sbjct: 742 VLIITPASLKINWFSEIEKYLPAFDPQNVLIINSSNDMPKCASSY-KIIIVSFNIYKKLY 800
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ E + L+IVDESH +R ++ + + + K K ++ LSGTPS++RP +IF
Sbjct: 801 NLLKEIQFHLIIVDESHFIRTVHYGNQSQLTRLLKKKIRKTKHVLFLSGTPSINRPINIF 860
Query: 366 HQINMLW--PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
HQI L + K K F + YC Y+G+ + + + +R E + L + VMI
Sbjct: 861 HQIKYLINNKNIFPKNKIIFGEDYC---KKYFYRGE--KIYEENLRSWEFHYFLNKIVMI 915
Query: 424 RR-LKQHLLVQLPPKRRQIIRL 444
RR + Q P +R + L
Sbjct: 916 RRTINQVFQNNFPSLKRFFVYL 937
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 926 DLFCNLDCYEEYRLRTSGRFLREELFRIEHGVCTNCQLDCHKLVKHIKP---LSLEQRRK 982
+LFC C + Y L+ S LR ++ + G+C CQLDC L+K IK + Q+
Sbjct: 1578 NLFCEGKCRKLYFLKKSSCSLRRLIYERDKGICNMCQLDCTNLIKQIKNNKYFEINQKID 1637
Query: 983 YIVRVAP 989
Y +++ P
Sbjct: 1638 YFIKMYP 1644
Score = 40.0 bits (92), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFI----------SEKGIGFVRIDGNTLPRDRQSAV 573
I+ N + K IIF +H+ V ++ + I +V ++G +++ +
Sbjct: 1080 IEKNFPNKKKIIFCYHIMVSKCTEDELLKIIKQKKEKENISIDYVSLNGCIPEKEKIEKI 1139
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
FQ + I I + GLDFS F+E P + + Q E R R+ Q
Sbjct: 1140 LYFQNNINCYYGIFTICSVSHGLDFSFCNLCFFMEFPVNFFHLQQCESRLFRKNQKHNTY 1199
Query: 634 IYIFCAKD--TTDESHWQNLNKSLRCVSSA 661
++ F + +D W N+ + C +S
Sbjct: 1200 VFYFLLQKGLGSDHKTW---NRFILCSNST 1226
>gi|387593884|gb|EIJ88908.1| hypothetical protein NEQG_00727 [Nematocida parisii ERTm3]
Length = 582
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 207/458 (45%), Gaps = 64/458 (13%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS------ILVVCPAILRL 256
P Q+EGV+ R R LIADEMGLGKTLQAI+IA ++ S + +V P+
Sbjct: 139 PHQIEGVQVACERNYRLLIADEMGLGKTLQAISIAKTYLQEHSNETKKGLFIVAPSSNVP 198
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
W E+++++ + ++N + ++ SY ++ D+ +
Sbjct: 199 MWVGEVKKYITEVCYDVKEWRYAQKSNTSGIV----ALITSYNGASTYIDEIMPGDFFMG 254
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I DES S + +E + +A++ K++ ++LLSGTP+LS Y+++ QI+++ P L
Sbjct: 255 IADESQ----SLKNNESKRAQALVPFLTKLRSVILLSGTPALSNTYELYTQISIIHPTLF 310
Query: 377 GKAKYDFAKTYCDVKTVQGYQG-----QLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
D+ + YC + YQ + + L+EL + + + V+IRR+KQ L
Sbjct: 311 SYK--DYHERYCKISD-NHYQAANPKFKHLIKYRGSKNLDELKIAVNELVLIRRVKQDCL 367
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
QL KRR V I+D K P ++ K
Sbjct: 368 -QLGKKRR----------------IHVTFISDLVKKEMRSNVPINT-------------K 397
Query: 492 ISYQELGIAKLSGFREWL-SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
EL + +E L I I ++ N K+IIFAHH L+ +
Sbjct: 398 TLQNELLLEYNKAAKEKLPDILCFIKQAR-------NKTKEKIIIFAHHKDTLNALYMEF 450
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
++ I +IDG+T + R+ F+ ++ +A++ + A GL A V+F ELP
Sbjct: 451 KDRAI---KIDGSTARQKREILCDKFRNCPDIDVAVLSLKACSTGLTLVCATMVIFAELP 507
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+P + QAEDR +R GQT V IY A D+ W
Sbjct: 508 WTPGDLHQAEDRIYRIGQTQTVKIYYLIASH-VDKHMW 544
>gi|323448244|gb|EGB04145.1| hypothetical protein AURANDRAFT_39147 [Aureococcus anophagefferens]
Length = 684
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 142/262 (54%), Gaps = 24/262 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P+S+ + + PFQ GV + +R GR L+ADE GLGKT+QAI A + +LVV P+
Sbjct: 180 IPRSIWNALAPFQKYGVSWIVRNNGRALLADEPGLGKTIQAIGAACAYYHEWPVLVVSPS 239
Query: 253 ILRLSWAEELERWLP--FCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LRKS 307
R W E +WLP LP D I ++ R +++V SY ++HR +RK+
Sbjct: 240 SARFHWEAEFLQWLPDEDYLPRDGILVITSERIAATTAVDRAKILVTSYDLVHREAVRKT 299
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+ ++I DE H+++ K + KA+L + +R +LLSGTP+LSRP ++F Q
Sbjct: 300 LTRVAPNVIICDECHYLKNGK----AQRTKALLPIIKASRRAILLSGTPALSRPMEVFWQ 355
Query: 368 INML----WPGLLGKAKYDFAKTYC------DVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
++ L W DF K YC D G+ +++S LEEL+ LL
Sbjct: 356 LHALDDKQWTD-----PADFNKRYCSGRRKKDDPKDTNEDGEKKKEYSAASNLEELHTLL 410
Query: 418 KQTVMIRRLKQHLLVQLPPKRR 439
+ T+M+RR K +L QLPPKRR
Sbjct: 411 RATLMLRRNKASILTQLPPKRR 432
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
SD +D S KM++FAHH KVLD + I + I ++RIDG T +DRQS V +FQ
Sbjct: 545 SDLLHGVDEERFSGKMLVFAHHRKVLDTLANGIL-RDIKYIRIDGTTPAKDRQSRVTTFQ 603
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+V++A++GITA G+ L ++A V+F EL +P+ +LQAEDRAHR GQTS V +
Sbjct: 604 NDAKVRVALLGITAAGIALTLTAASRVIFTELYWTPAALLQAEDRAHRIGQTSEVVVEYL 663
Query: 638 CAKDTTDESHW 648
A D DE W
Sbjct: 664 LADDCVDEILW 674
>gi|390354115|ref|XP_781858.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 976
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 9/215 (4%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
+H + EV + + + L ++PFQ +GV F + RGGR LIAD+MGLGKT+QAI +A
Sbjct: 472 KHTTLEVPEADLSGVDTKLAQGLMPFQKKGVDFAIHRGGRALIADDMGLGKTIQAICVAC 531
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISY 298
+ + ILVV P+ +R SWAE +W+P ++++V R + V VISY
Sbjct: 532 YYRTEWPILVVSPSSMRFSWAESFLKWIPSLEEYEVNVVTSGRES----VSCGLVNVISY 587
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
++ R K++ + ++I+DESH ++ K KA L + R++LLSGTP+L
Sbjct: 588 DLMARKTKALQASGFKVIIMDESHFLKSYKTA----RTKAALPLLKAASRVILLSGTPAL 643
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
SRP ++F QI+++ P L + +DF+ YCD K V
Sbjct: 644 SRPSELFQQISVVNPRLF-PSFHDFSLRYCDAKQV 677
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 110/218 (50%), Gaps = 21/218 (9%)
Query: 450 EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
+++ ++V N S K A D K SD G + + E G+AK+ +E++
Sbjct: 676 QVIMDPSSVKTGNQSLKCAAKDMEKKKSDTQ---GTLLKY----FSETGLAKIPALKEYV 728
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
ID+ +K ++FAHH KV+D + E + +K I +RIDGNT R
Sbjct: 729 --------------IDLAECGHKFLVFAHHQKVMDALAEALLKKKIKIIRIDGNTSSYMR 774
Query: 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
V FQ ++ ++A++ ITA G+ ++A V+F EL +P +++QAEDR HR GQ
Sbjct: 775 NELVEKFQTNDSYQVAVLSITACNAGITLTAASTVLFAELFWNPGILVQAEDRVHRIGQQ 834
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
+V + AK T D+ W + K L +S A K D
Sbjct: 835 ESVTVRYLIAKQTADDYIWPLIQKKLSILSKAGLSKDD 872
>gi|326670855|ref|XP_003199305.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like
[Danio rerio]
Length = 668
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 142/274 (51%), Gaps = 19/274 (6%)
Query: 118 YTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCR 177
Y N + + L DY ++ L +E E +P L S T P
Sbjct: 200 YQMLNMKTRKWTFLLEDYGKLMADLNELPTVETEPLPHAVLQSFS--SQFEKTQSQAPVP 257
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA 237
PE +D + + L ++PFQ +GV F + R GR L+AD+MGLGKT+QAI IA
Sbjct: 258 PE--AD------LSHIDPQLTRSLMPFQRDGVNFAVSREGRLLLADDMGLGKTVQAICIA 309
Query: 238 ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297
A + S +LVV P+ +R +WAE RWLP P I++V +++ R + +IS
Sbjct: 310 AYYRSEWPLLVVAPSSVRFTWAEAFRRWLPSVKPDSINVVVKGKDS----LRSGLINIIS 365
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
Y +L+++ K + ++I+DESH ++ K +A L + KR++LLSGTP+
Sbjct: 366 YDLLNKMDKQPPSSPFNVIIMDESHFLKNMKTA----RCRAALPLLKTAKRVILLSGTPA 421
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+SRP +++ QI + P L + +DF YCD K
Sbjct: 422 MSRPAELYTQIQAVRPALFPRF-HDFGTRYCDAK 454
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 74/117 (63%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHH VLD + + + EK I F+RIDG+T +RQ FQ S + +A++ ITA
Sbjct: 492 KFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITA 551
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+GL SA VVF EL +P +++QAEDR HR GQTS V+I+ AK T D+ W
Sbjct: 552 ANMGLTLHSAALVVFAELFWNPGVLIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLW 608
>gi|284046270|ref|YP_003396610.1| helicase [Conexibacter woesei DSM 14684]
gi|283950491|gb|ADB53235.1| helicase domain protein [Conexibacter woesei DSM 14684]
Length = 726
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 226/489 (46%), Gaps = 68/489 (13%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
E I + L + PFQ GVR+ L R +ADE GLGKT++A+A A A ++
Sbjct: 261 EPIAAVDARLGGTLEPFQWAGVRYVLD-ARRAFLADEQGLGKTVEALA-AVEADDAYPVV 318
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VVCPA L+L+W E RWLP + ++ G + P + +++Y ++ R++
Sbjct: 319 VVCPASLKLNWERETRRWLPH---RSVAVIEGRQAVPP----TAEITIVNYEVVDNHRET 371
Query: 308 MIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ L++DE+H+ + +KRT V+ + + + K + L+GTP L+ P ++
Sbjct: 372 LARLRPGALVIDEAHYCKNPSAKRT---RAVRRLAESMGREKLRLALTGTPVLNHPDELI 428
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
Q+ +L G L DF G + Q F + E L+ L++ +RR
Sbjct: 429 SQLRVL--GRLD----DF-----------GSGARFKQQFRGPLTEERLHWHLRRRCFVRR 471
Query: 426 LKQHLLVQLPPKRRQIIRLLL--KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
LK +L QLP KR+ ++ + L +R ++ + + + + D + +
Sbjct: 472 LKSEVLPQLPAKRQVVVPVALDNEREYRLAERDVIRWLREQPLDLSELRA--------KI 523
Query: 484 GACCRLGKISYQELGI-------AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
A R +++ +LG KL W IH +A + +++F
Sbjct: 524 AATLRAKRLA--QLGALQRIAARGKLHAALAW--IHDFLASGE------------PLVVF 567
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
A H++V D V E ++ R DG T R++ V +FQ + ++ + G+
Sbjct: 568 ARHVEVQDAVLERFADAAHLLGR-DGATA---REATVRAFQQPDGPQLIVAATQVAAQGI 623
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
+ A NV FLEL +P++ QAEDR HR GQ AV + A T DE+ + +
Sbjct: 624 TLTRASNVAFLELEWTPAMHDQAEDRCHRIGQHDAVTAWYLLAARTIDETMAHLIQRKRG 683
Query: 657 CVSSATNGK 665
V++ T+G+
Sbjct: 684 IVAAVTDGR 692
>gi|449678278|ref|XP_002170635.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like,
partial [Hydra magnipapillata]
Length = 316
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 173/331 (52%), Gaps = 48/331 (14%)
Query: 265 WLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV 324
WLP +I++V + NP +V +ISY + +L K+++ Q + ++++DESH +
Sbjct: 31 WLPSLTEEEINIVSTGKENPCK----GQVNIISYDLASKLSKALLSQKFDIIVMDESHFL 86
Query: 325 RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFA 384
+ + K + + K ++LLSGTP+LSRP ++F QI+ L L G + + F
Sbjct: 87 K----SHNASRTKNIFPLLQASKHVILLSGTPALSRPKELFTQISALDQKLFG-SFHSFR 141
Query: 385 KTYCDVK-TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR 443
YC+ K T G+ D + EEL+ +L T+MIRR+K +L QLP K+RQII
Sbjct: 142 LRYCNAKETKYGW------DDNGCSNSEELSAVLSSTIMIRRMKSEVLNQLPEKQRQII- 194
Query: 444 LLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE-LGIAKL 502
+L S + +K + N + T+ K K R ++Y E AKL
Sbjct: 195 -ILDPSFVECSKK---LQNSCQYFVTSQKKDK------------RTALLAYYEDTSSAKL 238
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDG 562
+G E++S +I + K+I+FAHH+K+LDG++E + +K I +RIDG
Sbjct: 239 NGVCEFISDKLLIGQ--------------KIIVFAHHIKMLDGIEEVVRKKNICSIRIDG 284
Query: 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+T + RQ V F + E IAI+ +TA G
Sbjct: 285 STNSKQRQILVDDFTNNKECLIAILSLTAAG 315
>gi|397614453|gb|EJK62805.1| hypothetical protein THAOC_16568, partial [Thalassiosira oceanica]
Length = 920
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 201/421 (47%), Gaps = 69/421 (16%)
Query: 292 RVVVISYTMLHRLRKS--MIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVK 347
RVV+ S +++ L +S ++ + +IVDESH + R +KRT + V+ + +
Sbjct: 197 RVVICSISLVVNLIESNRLLPGMFKAIIVDESHALKSRSTKRT------RYVVPLLRAAE 250
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWP--GLLG------KAKYDFAKTYCDVKTV-QGYQG 398
R++LLSGTP+L+RP +++ Q+++L G G + +CD + Y
Sbjct: 251 RVLLLSGTPALARPSELWPQLSVLGARRGRDGDGSAAPGSSSGGGGVWCDEDEFNEKYGK 310
Query: 399 QLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK--------RSE 450
++ + RL EL+ +L TVMIRR+K +L LP K R+ + ++ R+
Sbjct: 311 GKREETIRSGRLAELHTMLTSTVMIRRMKADILKNLPAKVREKAYVKVEDEDLRNEFRTY 370
Query: 451 IVSAKAAVGVIND--SEKDATNDKTPKDSDEHDDSGACCRL-------GKIS-------- 493
+ + G++ E+ N +P + S A G I
Sbjct: 371 MQLLRQGRGILGKMAREQHRANPMSPNGNAASATSTAVLHPAMQPGGDGVIKNKAVLNHL 430
Query: 494 YQELGIAKLS----GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
Y+ G +K++ + WL+ +P K+ IFAHHL VLD V +
Sbjct: 431 YKLTGKSKIACVTKMLKSWLA----------------DPTKGKLCIFAHHLDVLDEVSKG 474
Query: 550 -----ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ + ++RIDG+T P+ RQ + FQ V+IA++GITA GV + +++ V
Sbjct: 475 AGLSNLPKSTTKYIRIDGSTTPQARQEQILRFQTDPTVRIAMLGITAAGVAVTLTASSTV 534
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
F EL +P++M+QAEDR HR GQ + V F A+ T DE W+ + K R + G
Sbjct: 535 WFTELFWTPAIMIQAEDRCHRIGQQARVRCIYFVARGTLDEVLWKLIEKKFRDLGQFVEG 594
Query: 665 K 665
K
Sbjct: 595 K 595
>gi|345888965|ref|ZP_08840004.1| hypothetical protein HMPREF0178_02778 [Bilophila sp. 4_1_30]
gi|345040127|gb|EGW44412.1| hypothetical protein HMPREF0178_02778 [Bilophila sp. 4_1_30]
Length = 1343
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 228/487 (46%), Gaps = 56/487 (11%)
Query: 193 LPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +QL+G R G CL AD+MGLGKT+Q IA+ G ++
Sbjct: 873 VPSTLRAELRDYQLDGYVWMSRLARWGAGACL-ADDMGLGKTVQTIAVLLAQSELGPSII 931
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+ P + +W EL+R+ P +H G R V V+V SY +LH K
Sbjct: 932 IAPTSVCHNWENELDRFAPTL---SVHRFGPGDRTALVGALGPGDVLVASYGLLHTEAKC 988
Query: 308 MIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ ++W + + DE+ ++ ++R ++ A VA L+GTP +R D++
Sbjct: 989 LSGREWQVAVFDEAQALKNADTRRARASRQIPAAFRVA--------LTGTPIENRLEDLW 1040
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
N++ PGLLG + F K + + + + S + L L++ ++ RR
Sbjct: 1041 SLFNLINPGLLG-TRQSFQKRFAAASAPSTEENAVSEGQSAA--RQALRALVRPFIL-RR 1096
Query: 426 LKQHLLVQLPPKRRQIIRL-----------LLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
K +L +LPP+ Q+I + L+R+ + S +AA E + K
Sbjct: 1097 TKSEVLTELPPRTEQVIEVDLPDDERAFYEALRRNALASLEAA-----KQEYAEGSQKFS 1151
Query: 475 KDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
++ ACC I L AKLS F E + ++ +K
Sbjct: 1152 ILTELMKLRRACCAPALIDPGTSLTGAKLSAFMELVE--------------ELVRGGHKA 1197
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++F+ + L + + G G+ +DG+T R+RQ+AV +FQ S + + +I + AGG
Sbjct: 1198 LVFSQFVGCLSEARRLLDAAGYGYQYLDGSTPDRERQAAVAAFQ-SGKGDLFLISLKAGG 1256
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
GL+ ++A V+ L+ +P++ QA DRA+R GQ V +Y A+ T +ES + L++
Sbjct: 1257 QGLNLTAADYVIHLDPWWNPAVEDQASDRAYRLGQQRPVTVYRLVARGTVEESILK-LHR 1315
Query: 654 SLRCVSS 660
S R +++
Sbjct: 1316 SKRALAA 1322
>gi|299471940|emb|CBN79620.1| harp (smarcal1)-related [Ectocarpus siliculosus]
Length = 1197
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 161/295 (54%), Gaps = 20/295 (6%)
Query: 138 VLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSL 197
V+ ++ AG E+E +P VE L SI + + + DE+ M +P+ L
Sbjct: 58 VVKKVRGVAGTEIEDLP----PFVETLLASIKKDGSDALSEQEMKDEISLRME-SVPEDL 112
Query: 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLS 257
+ + FQ+E +RF +R+ G+ L+ DEMGLGKTLQA+A+A + +LVV P+ L+ +
Sbjct: 113 MSTLYQFQVECLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDN 172
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKSMI-EQDWAL 315
W E +W+P I +V R+ + + ++V++SY + R+ KS++ + + +
Sbjct: 173 WRNEAMKWVPGLTKEAIQIV---RDAKMGVRDSAQLVIVSYDLATRMVEKSLLWKGQFEI 229
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+I DESH++ ++ + + +AV+ + K R + ++GTP+LSRP ++F Q+ L P
Sbjct: 230 VIADESHYL----KSVDAKRSQAVVPLMQKASRAICVTGTPALSRPAELFMQLKALMPQA 285
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
+ + FA YC +QG D + EL ++L+ +M+RRLK+ +
Sbjct: 286 F-RTFHPFAVRYCAA-----FQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEV 334
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++FAHH +V+D ++ + E G+ VRIDG+T + RQ V FQ S V + ++ ITA
Sbjct: 790 KLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVILLSITA 849
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESHWQN 650
GVG+ ++A VF EL +P M QAEDR HR GQ + V I + T D+
Sbjct: 850 AGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVGRGTMDDGVIST 909
Query: 651 LNKSLRCVSSATNGKYDA 668
+++ + S DA
Sbjct: 910 IHRKQTTLRSTVGLNRDA 927
>gi|268572145|ref|XP_002641246.1| Hypothetical protein CBG09114 [Caenorhabditis briggsae]
Length = 467
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 229/510 (44%), Gaps = 73/510 (14%)
Query: 1 MEITEEQRQ-----RAEANRLAALAKRKALQQSATTASN---------------RQDAWR 40
M +T+EQR+ R EA R AA K L ++++++N RQ
Sbjct: 1 MALTDEQRKAIALKREEALRRAAKIKEMELLTASSSSTNFPPPTRPVFRSPPQNRQPMKS 60
Query: 41 LSKCRKFSTEPTHFPKSALADPNSTTQLPENFRVRLEICSPDSFSVTPLAIEGFVYPGEE 100
S T +F L T+ + V+L++ D + YP
Sbjct: 61 TSNSSIKQTTMNNFITQPLNPAPPTSNIKPTIVVKLKLDVEDRVKIE-------FYPFHS 113
Query: 101 ECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNV 160
+ + Q +PS N K L +++ + LKN+ ++VE P + +N+
Sbjct: 114 AIVDLIKQ-----VPSRNYDPNK--KLWTVSLSEHSTMSNLLKNAQSVKVEIEP-IPMNI 165
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCL 220
+ G +P+ ++ M +L K L P+Q EGV F L R GR L
Sbjct: 166 L---------GMMTSFKPKPTPSDLTKIMDPELIKRLF----PYQKEGVTFALERNGRIL 212
Query: 221 IADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF-- 278
+ADEMGLGK++QA+ IA + + +L+VCPA ++ +W +++ + P IH +F
Sbjct: 213 LADEMGLGKSVQALTIARYYKADWPLLIVCPASVKGAWKKQINTFFPI-----IHRIFIV 267
Query: 279 GHRNNPVHLTRFPRVV-VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
++P+ R V ++SY + + + ++ +I DESH ++ K K
Sbjct: 268 DKSSDPLPDVRTSNTVAIMSYEQMVLKADLLKREKYSTIIFDESHMLKDGKA----RRTK 323
Query: 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ 397
D+A +LLSGTP+LSRP ++F QI ++ L ++FA YCD G Q
Sbjct: 324 VATDLAKIALHAILLSGTPALSRPSELFTQIRLIDHKLFTNF-HEFAIRYCD-----GKQ 377
Query: 398 GQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII-----RLLLKRSEIV 452
G+ + EEL ++ + MIRRLK +L LP KRR+++ + + ++
Sbjct: 378 GRFCFEAKGCTNSEELAAIMFRRFMIRRLKADVLKDLPEKRREVVYVSGPTIDARMDDLQ 437
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
AKA IN K T K K+S D+
Sbjct: 438 KAKADYEKINSMTK--TTGKIKKESPNLDE 465
>gi|317484163|ref|ZP_07943092.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316924512|gb|EFV45669.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 1343
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 228/487 (46%), Gaps = 56/487 (11%)
Query: 193 LPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +QL+G R G CL AD+MGLGKT+Q IA+ G ++
Sbjct: 873 VPSTLRAELRDYQLDGYVWMSRLARWGAGACL-ADDMGLGKTVQTIAVLLAQAEMGPSII 931
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+ P + +W EL+R+ P +H G R V V+V SY +LH K
Sbjct: 932 IAPTSVCHNWENELDRFAPTL---SVHRFGPGDRAALVGALGPGDVLVASYGLLHTEAKC 988
Query: 308 MIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ ++W + + DE+ ++ ++R ++ A VA L+GTP +R D++
Sbjct: 989 LSGREWQVAVFDEAQALKNADTRRARASRQIPAAFRVA--------LTGTPIENRLEDLW 1040
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
N++ PGLLG + F K + + + + S + L L++ ++ RR
Sbjct: 1041 SLFNLINPGLLG-TRQSFQKRFAAASAPSTEENAVSEGQSAA--RQALRALVRPFIL-RR 1096
Query: 426 LKQHLLVQLPPKRRQIIRL-----------LLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
K +L +LPP+ Q+I + L+R+ + S +AA E + K
Sbjct: 1097 TKSEVLTELPPRTEQVIEVDLPDDERAFYEALRRNALASLEAA-----KQEDAEGSQKFS 1151
Query: 475 KDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
++ ACC I L AKLS F E + ++ +K
Sbjct: 1152 ILTELMKLRRACCAPVLIDPGTSLTGAKLSAFMELVE--------------ELVRGGHKA 1197
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++F+ + L + + G G+ +DG+T R+RQ+AV +FQ S + + +I + AGG
Sbjct: 1198 LVFSQFVGCLSEARRLLDAAGYGYQYLDGSTPDRERQAAVAAFQ-SGKGDLFLISLKAGG 1256
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
GL+ ++A V+ L+ +P++ QA DRA+R GQ V +Y A+ T +ES + L++
Sbjct: 1257 QGLNLTAADYVIHLDPWWNPAVEDQASDRAYRLGQQRPVTVYRLVARGTVEESILK-LHR 1315
Query: 654 SLRCVSS 660
S R +++
Sbjct: 1316 SKRALAA 1322
>gi|393911645|gb|EFO25268.2| hypothetical protein LOAG_03215 [Loa loa]
Length = 1113
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 138/530 (26%), Positives = 231/530 (43%), Gaps = 98/530 (18%)
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRC---LIADEMGLGKT 230
N + E E+ ++M K+P + +Q GVR+ +C ++ADEMGLGKT
Sbjct: 225 NKLQEESDFHELKNDM--KIPNDCWKKLYKYQKTGVRWLNELHNQCVGGILADEMGLGKT 282
Query: 231 LQAIAI------------AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278
+Q I+ F G +L++CP L W +E W P C A +H
Sbjct: 283 VQVISFLRALAFSRLEDRGFSFFGLGPVLIICPTTLIHQWLKEFHTWFPLCRVAILHSSG 342
Query: 279 G-HRNNPVHLTRF------PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
H NP + + V++ SY R RK ++++ W +I+DE H +R
Sbjct: 343 SFHGQNPQLIRKMVVARSDGNVLLTSYGTFARNRKHLVDKIWHYVILDEGHKIR------ 396
Query: 332 EPEEVKAVLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
PE A + +A K R ++LSG+P + +++ ++ ++PG LG A + F +
Sbjct: 397 NPE---AQITLAVKEVRTPHRLILSGSPLQNSLRELWSLVDFVYPGRLG-ALHSFMDKFS 452
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII- 442
T GY + +L+ + ++RRLK+ + + LP K Q++
Sbjct: 453 IPITQGGYANATAVQVRTAYKCA---CILRDAINPYLLRRLKKDVEMSIHLPTKTEQVLF 509
Query: 443 -------RLLLKR-------SEIVSAK--AAVGVIN-----------DSEKDATNDKTPK 475
R L + S I+S K A VG+I + ND +
Sbjct: 510 CNITPCQRSLYEEYLSSHECSRILSGKTDAFVGLITLRKLCNHPDLITGGPNKFNDYSVT 569
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
+E D GA CR GK+ + + KL W + K+++
Sbjct: 570 AENEM-DFGAPCRSGKMQVLK-ALLKL-----W------------------KQQDQKVLL 604
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ ++L +++F+ ++G ++R+DG T R RQ V F +E+ I ++ GG+G
Sbjct: 605 FSQSRQMLTILEKFVIQEGYEYLRMDGTTPVRSRQLLVEKFNKVDEIFIFLLTTRVGGLG 664
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + A VV + +PS +QA +RA R GQ AV IY T +E
Sbjct: 665 INLTGANRVVIFDPDWNPSTDIQARERAWRIGQERAVTIYRLLTGGTIEE 714
>gi|312071855|ref|XP_003138800.1| hypothetical protein LOAG_03215 [Loa loa]
Length = 1112
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 138/530 (26%), Positives = 231/530 (43%), Gaps = 98/530 (18%)
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRC---LIADEMGLGKT 230
N + E E+ ++M K+P + +Q GVR+ +C ++ADEMGLGKT
Sbjct: 225 NKLQEESDFHELKNDM--KIPNDCWKKLYKYQKTGVRWLNELHNQCVGGILADEMGLGKT 282
Query: 231 LQAIAI------------AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278
+Q I+ F G +L++CP L W +E W P C A +H
Sbjct: 283 VQVISFLRALAFSRLEDRGFSFFGLGPVLIICPTTLIHQWLKEFHTWFPLCRVAILHSSG 342
Query: 279 G-HRNNPVHLTRF------PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
H NP + + V++ SY R RK ++++ W +I+DE H +R
Sbjct: 343 SFHGQNPQLIRKMVVARSDGNVLLTSYGTFARNRKHLVDKIWHYVILDEGHKIR------ 396
Query: 332 EPEEVKAVLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
PE A + +A K R ++LSG+P + +++ ++ ++PG LG A + F +
Sbjct: 397 NPE---AQITLAVKEVRTPHRLILSGSPLQNSLRELWSLVDFVYPGRLG-ALHSFMDKFS 452
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII- 442
T GY + +L+ + ++RRLK+ + + LP K Q++
Sbjct: 453 IPITQGGYANATAVQVRTAYKCA---CILRDAINPYLLRRLKKDVEMSIHLPTKTEQVLF 509
Query: 443 -------RLLLKR-------SEIVSAK--AAVGVIN-----------DSEKDATNDKTPK 475
R L + S I+S K A VG+I + ND +
Sbjct: 510 CNITPCQRSLYEEYLSSHECSRILSGKTDAFVGLITLRKLCNHPDLITGGPNKFNDYSVT 569
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
+E D GA CR GK+ + + KL W + K+++
Sbjct: 570 AENEM-DFGAPCRSGKMQVLK-ALLKL-----W------------------KQQDQKVLL 604
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ ++L +++F+ ++G ++R+DG T R RQ V F +E+ I ++ GG+G
Sbjct: 605 FSQSRQMLTILEKFVIQEGYEYLRMDGTTPVRSRQLLVEKFNKVDEIFIFLLTTRVGGLG 664
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ + A VV + +PS +QA +RA R GQ AV IY T +E
Sbjct: 665 INLTGANRVVIFDPDWNPSTDIQARERAWRIGQERAVTIYRLLTGGTIEE 714
>gi|170593189|ref|XP_001901347.1| DNA excision repair protein ERCC-6 [Brugia malayi]
gi|158591414|gb|EDP30027.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
Length = 1103
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 226/512 (44%), Gaps = 96/512 (18%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRC---LIADEMGLGKTLQAIAI------------ 236
K+PK + + +Q GVR+ +C ++ADEMGLGKT+Q I+
Sbjct: 222 KIPKDCWEKLYKYQKTGVRWLNELHNQCVGGILADEMGLGKTVQVISFLRGLAFSCLEDR 281
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF------ 290
F G +L++CP L W +E W P C A +H+ L R
Sbjct: 282 GFSFSGLGPVLIICPTTLIRQWLKEFRTWFPLCRVAILHISGSFHGQSAQLIRKMVVSQS 341
Query: 291 -PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY + RK +I++ W +I+DE H +R P+ A + +A K R
Sbjct: 342 DGSVLLTSYGTFAKNRKHLIDKVWHYIILDEGHKIR------NPD---AQITLAVKEIRT 392
Query: 350 ---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406
++LSG+P + +++ I+ ++PG LG K++ D ++ QG +
Sbjct: 393 PHRLILSGSPLQNSLRELWSLIDFVYPGRLGA-----LKSFMDKFSIPITQGGYANATAV 447
Query: 407 GVRLE-ELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--------RLLLKR---- 448
VR + +L+ + ++RRLK+ + + LP K Q++ R L +
Sbjct: 448 QVRTAYKCACILRDAINPYLLRRLKKDVEMSIHLPTKTEQVLFCNITPCQRKLYEEYLSS 507
Query: 449 ---SEIVSAK--AAVGVIN--------DSEKDATNDKTPKD--SDEHDDSGACCRLGKIS 493
I+S K A VG+I D N D +DE GA CR GK+
Sbjct: 508 RECDRILSGKMDAFVGLITLRKLCNHPDLVTGGPNKFNDYDVTADEEMGFGAPCRSGKMQ 567
Query: 494 YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
+ + KL W + K+++F+ ++L +++F+ ++
Sbjct: 568 VLK-ALLKL-----W------------------KRQGQKVLLFSQSRQMLTILEKFVIQE 603
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
++R+DG T+ R RQ V F +N++ I ++ GG+G++ + A VV + +P
Sbjct: 604 RYEYLRMDGTTVVRSRQLLVEEFNKNNKIFIFLLTTRVGGLGINLTGANRVVIFDPDWNP 663
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
S +QA +RA R GQ AV IY T +E
Sbjct: 664 STDIQARERAWRIGQERAVTIYRLLTGGTIEE 695
>gi|393907875|gb|EFO16766.2| hypothetical protein LOAG_11737 [Loa loa]
Length = 562
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 198/430 (46%), Gaps = 90/430 (20%)
Query: 148 IEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMI--GK------------- 192
I+ P + VEK S+D E SD VV ++ GK
Sbjct: 193 IKAWSFPLEDICTVEKALQSLDDV---SLEIEKFSDHVVKTLLTYGKSNVGLNEPNLEKH 249
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+ K+L+D + P+Q GV +G+ + GR L+ADEMGLGK++QA+ IA
Sbjct: 250 IEKTLVDALFPYQRRGVMYGVMKRGRLLLADEMGLGKSIQALGIA--------------- 294
Query: 253 ILRLSWAEELERWLPFCLPADIHLVF--GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
W F D ++ G PV T+ VV++SY ++ + ++E
Sbjct: 295 ----------RNWRVFLPDVDEIVIIEKGSDRLPVKKTK-QTVVIMSYDLMVSKQSHLVE 343
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
D+ +I DESH + + S + KA +++ K RI+LL+GTP+LSRP ++F QI +
Sbjct: 344 YDFKAIIFDESHLL----KDSNAQRTKAATNISKKALRIILLTGTPALSRPVELFSQIRI 399
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
+ + + DFA YCD G +G+ + +EL ++L +VM+RRLK+ +
Sbjct: 400 IDSKMFPNYR-DFAIRYCD-----GKRGKYSFEAKGCTNSDELAIILTGSVMLRRLKKDV 453
Query: 431 LVQLPPKRRQIIRL-----LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
L LP KRR+++ L S++ AKAA D ND + E+
Sbjct: 454 LNDLPVKRREVVNLTDDSIYANISKLREAKAAYSGAKD------NDTKHQRLVEY----- 502
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
Y E GIAK ++ H DGA P+ K++IFAHH VLD
Sbjct: 503 --------YYETGIAKARSVARYIIDHYFY---DGA------PK-RKLLIFAHHQVVLDM 544
Query: 546 VQEFISEKGI 555
+ +++K I
Sbjct: 545 ISMDVAKKVI 554
>gi|293372914|ref|ZP_06619283.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
3f]
gi|298480929|ref|ZP_06999124.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
gi|292631982|gb|EFF50591.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
3f]
gi|298272952|gb|EFI14518.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
Length = 578
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 233/512 (45%), Gaps = 95/512 (18%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-------AACFISAGSILVVCPAILRL 256
+QLEGV++ + RC D+ GLGKTLQAI A + + +LV+CPA L++
Sbjct: 110 YQLEGVQYAIEHK-RCFFGDQPGLGKTLQAICAVVKAHKEAPIYGESFPVLVICPAALKV 168
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP----------RVVVISYTMLHRLRK 306
+W E +++ ++ RN + + V + +Y L++
Sbjct: 169 NWQREFKKFAGMN-----SIILDDRNRQSWQSFYECKKSDGNPLCEVFITNYESLNKFFV 223
Query: 307 SMIEQDWAL----------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
+ ++ L +I+DESH +C ++S+ ++ K V + + I
Sbjct: 224 KAVNKESKLTMKSIAFDQRVSLFRSVIIDESH--KC--KSSKTQQSKYVEGICKGKRYIF 279
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLL----GKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406
L+GTP ++ D+ Q+ +L G L G ++Y + YCD +
Sbjct: 280 ALTGTPVVNNNTDLLQQLKIL--GRLEDFGGYSRY--VERYCDGP-------------KQ 322
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSE 465
++ELN L T RR K +L QLP K RQ + + + E +A+A +
Sbjct: 323 ASNVKELNWRLWNTCFFRREKSKVLTQLPDKTRQYLTVDITTTKEYKAAEADMVKYLKKY 382
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
K+A++++ K + GA ++ Q K+ E+ +H VI DG
Sbjct: 383 KNASDEQVQKSMN-----GAVMVQMQLLKQISARGKIKAVCEF--VHDVI---DGG---- 428
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF---VRIDGNTLPRDRQSAVHSFQLSNEV 582
K+I+F + ++E ++E F V + G+ +Q AV SFQ + +
Sbjct: 429 -----EKLILFGY-------LKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDC 476
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
K+ I+ +GG GL ++A V F+E P + S QAEDRAHR GQ + VN Y F KDT
Sbjct: 477 KLIILNFKSGGTGLTLTAASRVAFIEFPWTFSDCEQAEDRAHRNGQKNNVNCYYFLGKDT 536
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
D+ + ++ ++ + +++ G D ++E V
Sbjct: 537 IDKYMY-DVIQTKKNIANGVTGTDDQVEENMV 567
>gi|397642908|gb|EJK75533.1| hypothetical protein THAOC_02744 [Thalassiosira oceanica]
Length = 977
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 182/347 (52%), Gaps = 31/347 (8%)
Query: 347 KRIVLLSGTPSLSRPYDIFHQINMLWPG--LLGK--AKYDFAKTYCDVKTVQGYQGQLFQ 402
KR +LLSGTP+L+RP +++ Q+ L P + GK + ++ K YC+ K + F
Sbjct: 8 KRCLLLSGTPALNRPVELWPQLLSLDPKGRMFGKGMSYTEYTKRYCNAKRTR------FG 61
Query: 403 DFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVI 461
KGV R EELN L++ VMIRRLK +L LP K+R I+ + + + + + ++
Sbjct: 62 WDVKGVSRPEELNQSLRR-VMIRRLKADVLQDLPAKQRSIVPVGIDKERERECRDNITML 120
Query: 462 NDSEKDATNDKTPKDSDEHDDSGACCR-LGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
+ + + DE + + R L +YQ G+AK E+ I + SD
Sbjct: 121 GAAREAVMSISLDDADDEANAANFEARQLLNQAYQTSGVAKAPATTEY--ILDWLEGSDP 178
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQ 577
S K+++FAHH +V+D ++ IS+K +G +RIDG+ P +R V FQ
Sbjct: 179 ---------SQKLVVFAHHKQVIDYIETTISKKYKGKLGMMRIDGSVPPAERALRVKKFQ 229
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+ ++AI+ +TA GVGL ++A N+VF EL P ++ QAEDR HR GQ ++VN+
Sbjct: 230 NNKNCRLAILSVTAAGVGLTLTAASNIVFAELHWVPGVLAQAEDRCHRIGQANSVNVMYC 289
Query: 638 CAKD---TTDESHWQNLNKSLRCVSSATNG-KYDALQEIAVEGVSYL 680
KD + D W+ L++ + + +G K L V+G S +
Sbjct: 290 ICKDEDLSVDMILWRMLSRKVGSLGRVVDGQKGSCLNAEEVDGSSKI 336
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 928 FCNLDCYEEYRLRTSGRF----LREELFRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKY 983
+C+ +C EE R++ G + +RE++F +E GVC C +D + L + IK L +R
Sbjct: 803 YCSFECAEEGRVKRGGLYSSSKIREQVFALERGVCQLCGVDSYALFQRIKALEPPERLNA 862
Query: 984 IVRV 987
+++
Sbjct: 863 LLKA 866
>gi|332980995|ref|YP_004462436.1| SNF2-like protein [Mahella australiensis 50-1 BON]
gi|332698673|gb|AEE95614.1| SNF2-related protein [Mahella australiensis 50-1 BON]
Length = 1040
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/476 (24%), Positives = 224/476 (47%), Gaps = 65/476 (13%)
Query: 193 LPKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
LP+ +++ +Q EG+ F + G ++AD+MGLGKT+QA+ + + S LV+
Sbjct: 570 LPQPFDNILRQYQKEGINWMHFLRKYGFGGILADDMGLGKTIQALVLISASNSDRPSLVI 629
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
CP L +W E++++ P + R ++ + +++ SY ++ + + +
Sbjct: 630 CPKTLVYNWYNEVQKFTPQLKTLIVEGQGAERIQLINDIKHYDLIITSYPVIQKDIEYLA 689
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
++ + I+DE+ +++ K T + +KA+ + K + L+GTP + +++ +
Sbjct: 690 DKTFEYCIIDEAQYIKNHK-TKTAKSIKAI-----RAKYRLALTGTPIENNLMELWSIFD 743
Query: 370 MLWPGLLG-----KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VM 422
L PG LG KA+YD K + LN LL + +
Sbjct: 744 FLMPGFLGSDSEFKARYD-------------------TPIMKNNDISALNSLLGRIRPFV 784
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR K+ +L +LPPK Q+ L ++ + + + S A ++ + + +
Sbjct: 785 LRRTKKEMLKELPPKMEQVSYAHLTPDQLALYTSVLEQVK-SNVFAIVEQKGFEHSQIEI 843
Query: 483 SGACCRLGKI-------------SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
A RL +I + ++L KL F E L D A + D
Sbjct: 844 LAALTRLRQICNHPALLTINTPATTKKLSSGKLDQFDELL---------DEALEGD---- 890
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K+++F+ +++L + + +KG+ + +DG T R+RQ+ + F +K+ +I I
Sbjct: 891 -HKVLVFSQFVQMLGILSNHLDKKGVPYCYLDGQT--RNRQAVIERFNNDENIKVFLISI 947
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ + +P + +QA DRA+R GQT VN+Y + T +E
Sbjct: 948 KAGGFGLNLTAADTVIIFDPWWNPMVEMQATDRAYRIGQTHPVNVYRLITRGTIEE 1003
>gi|312092341|ref|XP_003147303.1| hypothetical protein LOAG_11737 [Loa loa]
Length = 552
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 197/428 (46%), Gaps = 90/428 (21%)
Query: 148 IEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMI--GK------------- 192
I+ P + VEK S+D E SD VV ++ GK
Sbjct: 193 IKAWSFPLEDICTVEKALQSLDDV---SLEIEKFSDHVVKTLLTYGKSNVGLNEPNLEKH 249
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+ K+L+D + P+Q GV +G+ + GR L+ADEMGLGK++QA+ IA
Sbjct: 250 IEKTLVDALFPYQRRGVMYGVMKRGRLLLADEMGLGKSIQALGIA--------------- 294
Query: 253 ILRLSWAEELERWLPFCLPADIHLVF--GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
W F D ++ G PV T+ VV++SY ++ + ++E
Sbjct: 295 ----------RNWRVFLPDVDEIVIIEKGSDRLPVKKTK-QTVVIMSYDLMVSKQSHLVE 343
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
D+ +I DESH + + S + KA +++ K RI+LL+GTP+LSRP ++F QI +
Sbjct: 344 YDFKAIIFDESHLL----KDSNAQRTKAATNISKKALRIILLTGTPALSRPVELFSQIRI 399
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
+ + + DFA YCD G +G+ + +EL ++L +VM+RRLK+ +
Sbjct: 400 IDSKMFPNYR-DFAIRYCD-----GKRGKYSFEAKGCTNSDELAIILTGSVMLRRLKKDV 453
Query: 431 LVQLPPKRRQIIRL-----LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
L LP KRR+++ L S++ AKAA D ND + E+
Sbjct: 454 LNDLPVKRREVVNLTDDSIYANISKLREAKAAYSGAKD------NDTKHQRLVEY----- 502
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
Y E GIAK ++ H DGA P+ K++IFAHH VLD
Sbjct: 503 --------YYETGIAKARSVARYIIDHYFY---DGA------PK-RKLLIFAHHQVVLDM 544
Query: 546 VQEFISEK 553
+ +++K
Sbjct: 545 ISMDVAKK 552
>gi|281210112|gb|EFA84280.1| hypothetical protein PPL_03357 [Polysphondylium pallidum PN500]
Length = 1494
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 140/232 (60%), Gaps = 27/232 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P LL+ +LPFQ +G+ FG++ G+C+IADEMGLGKT+QA+AIA+ +I IL++CP+
Sbjct: 663 IPSKLLEALLPFQTKGLLFGIQHHGKCMIADEMGLGKTIQALAIASFYIQEWPILIICPS 722
Query: 253 ILRLSWAEELERWLPFCLPADIHLVF---GHRNNPVHLTRFPRVVVISYTMLHRLRKS-M 308
LR +W+ E+++W P I L+ G N+ ++ ++SY ++ +L + +
Sbjct: 723 SLRYTWSREIQKWFP-EYTGRISLITTGDGKANSLIN--------IVSYDLVTKLYNTEL 773
Query: 309 IEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ +++ ++I DESH+++ +KRTS AVL + R +LL+GTP+LSRP +++
Sbjct: 774 MPRNFRVIICDESHYLKNINAKRTS------AVLKLIKSAVRRILLTGTPALSRPIELYP 827
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
Q+ L + K +F YC ++G+ D++ L EL+VLL+
Sbjct: 828 QLVALETPIYSKMN-EFGLRYC-----AAFKGRYGWDYTGNSHLPELHVLLE 873
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 18/233 (7%)
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
E G AKL G ++++ + + + K ++FAHH +LDG++ I G
Sbjct: 873 ESGRAKLPGAQDYI--------------VGLVKENKKFLVFAHHTDILDGLERSIKSTGT 918
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
G++RIDG+T RQ+ V FQ S++ ++A++ ITA G GL +++ VVF+EL +P +
Sbjct: 919 GYMRIDGSTPAEARQTYVTRFQNSDKCRVALLSITAAGTGLTLTASSLVVFVELYWTPGV 978
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVE 675
+ QAEDR HR GQ V+I+ K+T D+ W + L + +G+ +EI
Sbjct: 979 LRQAEDRVHRIGQREDVHIHYLIGKNTLDDKMWPTICNKLEVLGETLDGQ----EEILHT 1034
Query: 676 GVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEI 728
+ L + K D+ + T +++ +L +P S++ ++ +++I
Sbjct: 1035 EIHDLRSNTKLDQFIDVKTNINSINNNNNVKLQPIPTSTKQEQVIDVDDDEQI 1087
>gi|237721132|ref|ZP_04551613.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449967|gb|EEO55758.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 578
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 233/512 (45%), Gaps = 95/512 (18%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-------AACFISAGSILVVCPAILRL 256
+QLEGV++ + RC D+ GLGKTLQAI A + + +LV+CPA L++
Sbjct: 110 YQLEGVQYAIEHK-RCFFGDQPGLGKTLQAICAVVKAHKEAPIYGESFPVLVICPAALKV 168
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP----------RVVVISYTMLHRLRK 306
+W E +++ ++ RN + + V + +Y L++
Sbjct: 169 NWQREFKKFAGMN-----SIILDDRNRQSWQSFYECKKSDGSPLCEVFITNYESLNKFFV 223
Query: 307 SMIEQDWAL----------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
+ ++ L +I+DESH +C ++S+ ++ K V + + I
Sbjct: 224 KAVNKESKLTMKSIAFDQRVSLFRSVIIDESH--KC--KSSKTQQSKYVEGICKGKRYIF 279
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLL----GKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406
L+GTP ++ D+ Q+ +L G L G ++Y + YCD +
Sbjct: 280 ALTGTPVVNNNTDLIQQLKIL--GRLEDFGGYSRY--VERYCDGP-------------KQ 322
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSE 465
++ELN L T RR K +L QLP K RQ + + + E +A+A +
Sbjct: 323 ASNVKELNWRLWNTCFFRREKSKVLTQLPDKTRQYLTVDITTTKEYKAAEADMVKYLKKY 382
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
K+A++++ K + GA ++ Q K+ E+ +H VI DG
Sbjct: 383 KNASDEQVQKSMN-----GAVMVQMQLLKQISARGKIKAVCEF--VHDVI---DGG---- 428
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF---VRIDGNTLPRDRQSAVHSFQLSNEV 582
K+I+F + ++E ++E F V + G+ +Q AV SFQ + +
Sbjct: 429 -----EKLILFGY-------LKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDC 476
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
K+ I+ +GG GL ++A V F+E P + S QAEDRAHR GQ + VN Y F KDT
Sbjct: 477 KLIILNFKSGGTGLTLTAASRVAFIEFPWTFSDCEQAEDRAHRNGQKNNVNCYYFLGKDT 536
Query: 643 TDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
D+ + ++ ++ + +++ G D ++E V
Sbjct: 537 IDKYMY-DVIQTKKNIANGVTGTDDQVEENMV 567
>gi|390440640|ref|ZP_10228864.1| Genome sequencing data, contig C316 [Microcystis sp. T1-4]
gi|389836037|emb|CCI32990.1| Genome sequencing data, contig C316 [Microcystis sp. T1-4]
Length = 1390
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLAQWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLEQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425453492|ref|ZP_18833249.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9807]
gi|389803157|emb|CCI17880.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9807]
Length = 1390
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLARWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425449259|ref|ZP_18829100.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 7941]
gi|389764135|emb|CCI09469.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 7941]
Length = 1390
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLARWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWQTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L ++ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIIRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425437030|ref|ZP_18817458.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9432]
gi|389678068|emb|CCH93043.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9432]
Length = 1390
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLARWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWQTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L ++ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIIRSYLEQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425442029|ref|ZP_18822289.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9717]
gi|389717080|emb|CCH98764.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9717]
Length = 1390
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLARWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLEQRQIKYQYLDGSTPAGDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425446891|ref|ZP_18826888.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9443]
gi|389732696|emb|CCI03398.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9443]
Length = 1390
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 143/509 (28%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLAQWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLDQRQIKYQYLDGSTPAGDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|423218721|ref|ZP_17205217.1| hypothetical protein HMPREF1061_01990 [Bacteroides caccae
CL03T12C61]
gi|392626338|gb|EIY20384.1| hypothetical protein HMPREF1061_01990 [Bacteroides caccae
CL03T12C61]
Length = 556
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 140/514 (27%), Positives = 227/514 (44%), Gaps = 65/514 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P SL P+QL+G+ GL R + DE GLGKTLQ+IA +A LV+CP+
Sbjct: 87 IPHSLKIQPYPYQLKGIARGLELK-RFMNCDEPGLGKTLQSIATIN-LANAFPCLVICPS 144
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL--TRFPRVVVISYTMLHRLRKSMIE 310
L+++W E W F + L R+ T +V +++Y L + I+
Sbjct: 145 SLKINWQRE---WEKFTDKKAMVLTDKVRDTWTFFYQTGMHQVFIVNYESLKKYFVQRIK 201
Query: 311 --QDWAL--------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
+ W L +I+DESH RC +++ ++ K + + ++ L+G
Sbjct: 202 KAEGWTLRDVEFRNSINLFKSVIIDESH--RC--KSASTQQAKFCKGICTGKEWVIELTG 257
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP ++RP D+ Q+ +L F YC GQ + L+ELN
Sbjct: 258 TPVVNRPKDLIPQLAILNRMDDFGGYKPFVNRYC--------SGQ-----REASNLKELN 304
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATNDKT 473
L + M RR K +L LP K RQ+ + R E + A+ + + KDA ++K
Sbjct: 305 FNLWKYCMFRREKSLVLTDLPDKIRQVNTCEITNRKEYMDAECDLIMYLQKYKDADDEKI 364
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
K G I Q K+ E++ D K+
Sbjct: 365 EKAL-----RGEVMVRINILRQISARGKVRDVIEFVK--------------DFRENGKKI 405
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
I+F +V+D ++ + V + G P +Q AV +FQ + + I I I A G
Sbjct: 406 ILFCSLHEVVDQLKRYFPTA----VSVTGRESPDMKQRAVDAFQNNPKTDIIICSIKAAG 461
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGL +++ NV F+E P + + Q EDRAHR GQ +V Y F + T DE ++ + +
Sbjct: 462 VGLTLTASSNVAFVEFPWTYADCCQCEDRAHRIGQKDSVTCYYFLGRRTIDEKVYRIIQE 521
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTD 687
+ +++A G + ++E V+ V+ + SD D
Sbjct: 522 K-KNIANAVTGSTEDIEENIVDMVARIFDSDYDD 554
>gi|425462695|ref|ZP_18842162.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9808]
gi|389824201|emb|CCI27009.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9808]
Length = 1390
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQVELRDYQLEGFRWLARLAQWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L ++ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIIRSYLEQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|357629862|gb|EHJ78380.1| hypothetical protein KGM_21178 [Danaus plexippus]
Length = 402
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 12/236 (5%)
Query: 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255
+L + +LPFQ EGVRFG+ R GRCLIAD+MGLGKT QA+AIA+ + +L+V + +R
Sbjct: 172 TLRNKLLPFQEEGVRFGIARKGRCLIADDMGLGKTFQALAIASYYRHDWPLLIVTTSSMR 231
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
+W ++ LP ++ + +++ R VV++SY ++ + + ++ +
Sbjct: 232 ETWQNKISELLPSVPLVNVATLTSNKDVNFVSDRQVEVVIVSYKIISLHTELLRQKRFGF 291
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+IVDESHH++ K + + L R VLLSGTP+LSRP +++ Q+++L P L
Sbjct: 292 VIVDESHHLKSPK-----AQCTSALFKLCGQGRAVLLSGTPALSRPVELYTQLSLLEPRL 346
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
+Y K YCD K Q D + L EL V+L++ +IRR K+ +L
Sbjct: 347 FTYTEY--GKRYCDAK-----QTNFGWDMTGKSNLAELLVILQRRFLIRRTKEQVL 395
>gi|407464616|ref|YP_006775498.1| SNF2-like protein [Candidatus Nitrosopumilus sp. AR2]
gi|407047804|gb|AFS82556.1| SNF2-related protein [Candidatus Nitrosopumilus sp. AR2]
Length = 574
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 219/459 (47%), Gaps = 56/459 (12%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q ++ AA +LVV P + +W
Sbjct: 114 LLNFQKEGLDFLLKSSGNALLADEMGLGKTVQTLSYAATEKQTFPLLVVAPLVTLNNWER 173
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTR------FPR--VVVISYTMLHRLRKSMIEQD 312
E+E++L + + + V + R P+ + +I+Y +L + + +
Sbjct: 174 EIEKFLK--KKSRNGRIIESESPSVTIIRTGKSQELPKTDIYIINYELLFKRNDDLSKLG 231
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
++ DE H++R SK T + + VK + + + + RI LSGTP +R +I+ I+++
Sbjct: 232 LRTIVCDEVHNLR-SKTTQKYKAVKKLAALPSILYRIG-LSGTPIYNRGSEIWPIIDIIK 289
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
PGLLG K +F + +C V + + + ++ +R E L++ VM+RR K +L
Sbjct: 290 PGLLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKADVLK 341
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD-EHDDSGACCRLGK 491
+L K R E+++A + + + KD++ E S + R +
Sbjct: 342 ELKDKVRY--------KEVIAADTDYYLEELDKIWKKVEAEQKDAETEFSKSASYHRAIQ 393
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL-----DGV 546
Q GIAKL ++ I ES +++F HH KV+ D +
Sbjct: 394 SERQIAGIAKLPHVINFVKNIMEIEES--------------VVVFCHH-KVIHKLLHDSL 438
Query: 547 QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
QEF V I G RQ + FQ E K+ I GI AG VG++ + A+ V+F
Sbjct: 439 QEF------SPVSIIGGQSDATRQDQIDKFQ-RGESKLMIAGIRAGNVGINLTRAKYVIF 491
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
EL SP++ QAEDR HR GQ + V Y T D+
Sbjct: 492 AELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDD 530
>gi|307564877|ref|ZP_07627402.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
gi|307346413|gb|EFN91725.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
Length = 477
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 135/511 (26%), Positives = 224/511 (43%), Gaps = 86/511 (16%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
P+Q EG+RFG+ R LI DE GLGKTLQ+I I +A LV+CP+ L+++W E
Sbjct: 15 PYQAEGIRFGIE-NKRILIGDEPGLGKTLQSIGIVDT-ANAYPCLVICPSSLKINWQREF 72
Query: 263 ERWL---PFCLPADIHLVFGH-RNNPVHLTRFPRVVVISYTMLHRL--------RKSMIE 310
E++ L + +G+ VH +V +++Y L + RKS
Sbjct: 73 EKFTDKSALVLDNSVQTTWGYLLKMGVH-----KVAIVNYESLRKYFVWDIKGCRKSFRL 127
Query: 311 QDWAL---------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR--IVLLSGTPSLS 359
+D +I+DESH V+ +P + + V + I LLSGTP ++
Sbjct: 128 KDVVFHPAIKVFKSIIIDESHRVK------DPSAQQTIFAKGLSVGKEWITLLSGTPVVN 181
Query: 360 RPYDIFHQINMLWPGLLGK--AKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVL 416
RP D+ Q++++ G L + + F YC D K +D + V L EL+
Sbjct: 182 RPEDLIAQLSIM--GRLNEFGGRSQFVADYCTDPKD---------KDATPAVPLSELSNK 230
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
L + MIRR K +L QLP K R + + + R E +A + + + T+ + +
Sbjct: 231 LYSSCMIRREKTKVLPQLPDKTRTDLYVDISNREEYNTAATNLVAYLEQYTECTDWEIRR 290
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP----RSN 531
++ +++++ + + A ID
Sbjct: 291 K-----------------------MRMEALVKFMTLRALATKGKIAQAIDFISTFLESGK 327
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+I+F +++D + + + V + G ++Q+AV +FQ ++ I I A
Sbjct: 328 KLIVFCSLHEIVDELCKTFPKA----VTVTGRDSAVNKQAAVDAFQTGENTRLIICSIKA 383
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GVGL ++A +V F ELP + + Q EDRAHR GQ VN Y + T D + + +
Sbjct: 384 AGVGLTLTAASDVAFCELPWTMADCCQCEDRAHRIGQNDNVNCYYLLGRGTIDNTIYSLI 443
Query: 652 NKSLRCVSSATNGKYDALQEIAVEGVSYLEM 682
+ N + D I + V Y E+
Sbjct: 444 QRKKSIAKEIMNSEDD----IPTDEVYYDEL 470
>gi|312374467|gb|EFR22018.1| hypothetical protein AND_15887 [Anopheles darlingi]
Length = 606
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 139/268 (51%), Gaps = 22/268 (8%)
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI 236
+P H+ +D SL+ +L FQ EGV F + + GR LIADEMGLGKT QAIA+
Sbjct: 187 KPSHVCLNAIDP-------SLVSSLLKFQKEGVAFAIDKSGRALIADEMGLGKTYQAIAV 239
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
A + +L+ A R SWA + + LP +PA +V NN RV++
Sbjct: 240 ADFYQQDWPLLICTTATTRDSWAVKFRQLLPH-IPAQRIMVL---NNGQDFIGDCRVLIS 295
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY+++ R + ++ + +LI DESH ++ K + ++ K +R++LLSGTP
Sbjct: 296 SYSLMERCGDKLQDRGFGMLIFDESHTLKNFKAKC----TNVAMALSKKARRVILLSGTP 351
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+LSRP ++F Q+ ML +Y + YC G Q D S L ELN+L
Sbjct: 352 ALSRPVELFTQLQMLDSRFCTFKEY--STRYC-----AGKQSSFGWDASGQSNLAELNIL 404
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
L + M+RR K ++ +L K R+ + L
Sbjct: 405 LARKFMVRRTKDEVMSELTEKNRETVIL 432
>gi|85860994|ref|YP_463196.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
gi|85724085|gb|ABC79028.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
Length = 1407
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 128/468 (27%), Positives = 226/468 (48%), Gaps = 57/468 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +Q+ G + +R G CL AD+MGLGKTLQA+A+ G LV
Sbjct: 944 VPSTLQAELRDYQVAGYEWMIRLSSWGAGACL-ADDMGLGKTLQALAVMLERGPKGPTLV 1002
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRK 306
+ P + ++W E+ R+ P P ++FG RN + + V++ SY +L + +
Sbjct: 1003 IAPTSVCMNWQAEINRFAPTLNP----VLFGGRNREERIGKLKGMDVLICSYGLLQQESE 1058
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
+ W +++DE+ ++ E + +A L + + I +GTP L Y
Sbjct: 1059 LLATAHWHTIVLDEAQAIK----NFETQRAQAALSLKGDFRLIT--TGTPIENHLGEFYT 1112
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+F IN PGLLG ++ F + Y G D RL++L ++
Sbjct: 1113 LFDFIN---PGLLG-SRPQFNERYAIPIEKNG-------DREARKRLKKL----ISPFLL 1157
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDE 479
RR+K +L +LPP+ ++++ + E +A AV + ++ ++
Sbjct: 1158 RRIKSQVLDELPPRTDVVLQVEMSPEETALYEAMRRQAVETLEQNDSPVGQKHLKILAEI 1217
Query: 480 HDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
ACC RL + EL +KL+ F E V+ E + S+K ++F+
Sbjct: 1218 MRLRQACCHPRL-VVPDSELTSSKLALFGE------VVEE--------MLENSHKALVFS 1262
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
+ L +Q+++ +KGI + +DG T P++R+ V +FQ + + + +I + AGGVGL+
Sbjct: 1263 QFVSHLALIQDYLKQKGIEYRYLDGGTPPKERRREVEAFQ-AGKGSLFLISLRAGGVGLN 1321
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ ++ +P++ QA DRAHR GQ V +Y K+T +E
Sbjct: 1322 LTAADFVIHMDPWWNPAVEDQASDRAHRIGQKRPVTVYRLVTKNTIEE 1369
>gi|407462264|ref|YP_006773581.1| SNF2-like protein [Candidatus Nitrosopumilus koreensis AR1]
gi|407045886|gb|AFS80639.1| SNF2-related protein [Candidatus Nitrosopumilus koreensis AR1]
Length = 574
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 215/454 (47%), Gaps = 46/454 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F ++ G L+ADEMGLGKT+Q ++ A +LVV P + +W
Sbjct: 114 LLNFQKEGLDFLMKSSGNALLADEMGLGKTVQTLSYVATEKQTFPVLVVAPLVTLNNWER 173
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTR------FPR--VVVISYTMLHRLRKSMIEQD 312
E+E++L + + + + V L R P+ + VI+Y +L + +
Sbjct: 174 EIEKFLK--KKSRNGRIVENESPSVTLIRTGKRKELPKSDIYVINYELLFKRYDDLANVG 231
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
++ DE H++R SK T + + +K + + + RI L SGTP +R +I+ +++L
Sbjct: 232 IKTIVCDEVHNLR-SKTTQKYKSIKKLAALPSVSYRIGL-SGTPIYNRGSEIWPIVDILK 289
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
PGLLG K +F + +C V + + + ++ +R E L++ VM+RR K +L
Sbjct: 290 PGLLGNFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKSDVLK 341
Query: 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD-EHDDSGACCRLGK 491
+L K R E+++A + + ++ KD+D E S + R +
Sbjct: 342 ELKDKVRY--------KEVIAADTDYYLEELDKIWKKLEEEQKDADSEFSKSASYHRAIQ 393
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
Q G+AKL ++ I ES +++F HH + + E +
Sbjct: 394 SERQIAGLAKLPHVINFVKNIMEIEES--------------VVVFCHHKVIHKLLHESLQ 439
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
E V I G RQ + FQ E K+ I GI AG VG++ + A+ V+F EL
Sbjct: 440 E--FAPVSIIGGQSDSVRQDQIDKFQ-KGESKLMIAGIRAGNVGINLTKAKYVIFAELDW 496
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
SP++ QAEDR HR GQ + V Y T D+
Sbjct: 497 SPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDD 530
>gi|193083817|gb|ACF09499.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
SAT1000-23-F7]
Length = 571
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 214/467 (45%), Gaps = 72/467 (15%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q +A A + LV+ P + +W
Sbjct: 109 LLNFQKEGLDFLLKSTGNALLADEMGLGKTVQTLAYIASEKQSSPTLVIAPLVTLNNWQR 168
Query: 261 ELERWLPF----------CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
E+ +++ +P + G + P+ F +I+Y ML + + +
Sbjct: 169 EIGKFMKKKSRNGRIIEDGIPTSTMIRKG-KQEPLGDFDF---YIINYEMLRKRFNDLSK 224
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ L+ DE H+R SK T + VK + + + VK V LSGTP +R +I+ +++
Sbjct: 225 LNIRTLVCDEVQHLR-SKTTQKYAAVKKIAAMKS-VKYRVGLSGTPIYNRGSEIWPIVDI 282
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PGLLG K +F + +C Y + + + L LL +M+RR K +
Sbjct: 283 LKPGLLGNFK-EFCEYFC-------YLDEKGKAIVVPSKRNGLRHLLTDHIMLRRKKSDV 334
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
L +L K R +EI+ A A + +D N K +E + L
Sbjct: 335 LKELKAKVRY--------TEIIDADA------NYYQDELNKIWSKLENEQK-TAETEFLK 379
Query: 491 KISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
SYQ G+AKL E++ I ES +++F HH +
Sbjct: 380 HASYQRAIQSERQAAGVAKLPSIIEFVKNIMEIEES--------------VVVFCHHKAI 425
Query: 543 L----DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ +QEF IG G T +DRQ+ + FQ + + K+ I G+ AG +G++
Sbjct: 426 HRLLHESLQEFHPSSIIG-----GQT-DKDRQANIDRFQ-NGDTKLMIAGLRAGNLGINL 478
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A+ V+F EL SP++ QAEDR HR GQ + V Y T DE
Sbjct: 479 TRAKYVIFGELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDE 525
>gi|198276225|ref|ZP_03208756.1| hypothetical protein BACPLE_02416 [Bacteroides plebeius DSM 17135]
gi|198271037|gb|EDY95307.1| helicase C-terminal domain protein [Bacteroides plebeius DSM 17135]
Length = 558
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 136/506 (26%), Positives = 223/506 (44%), Gaps = 65/506 (12%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
P+QL+G+ GL+ R + DE GLGKTLQ+IA +A LV+CP+ L+++W E
Sbjct: 98 PYQLKGIARGLQLK-RFMNCDEPGLGKTLQSIATIN-LGNAFPCLVICPSALKVNWERE- 154
Query: 263 ERWLPFCLPADIHLVFGHRNNPVHL--TRFPRVVVISYTMLHRLRKSMI--EQDWAL--- 315
W F + L R+ T +V +++Y L + I E W L
Sbjct: 155 --WHKFTDKKAMVLTDKVRDTWTFFYQTGMYQVFIVNYESLKKYFVQRIKKESGWTLRDV 212
Query: 316 -----------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+I+DESH RC ++S ++ K + + ++ L+GTP +++P D+
Sbjct: 213 EFRNSIQLFKSVIIDESH--RC--KSSSTQQAKFCKGICNGKEWVIELTGTPVVNKPKDL 268
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
Q+++L F YC GQ ++ L+ELN +L M R
Sbjct: 269 IPQLSILSRMEDFGGYKTFVNRYC--------SGQ-----NEASNLKELNYMLWTKCMFR 315
Query: 425 RLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
R K +L LP K RQ+ + R E + A+ + + K+A ++K K
Sbjct: 316 REKSLVLTDLPDKIRQVNTCEITNRKEYIDAERDLIMYLQKYKEADDEKIEKAL-----R 370
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
G I Q K+ E++ D K+I+F +V+
Sbjct: 371 GEVMVRINILRQISARGKVRDVIEFVK--------------DFRENGKKIILFCSLHEVV 416
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
D ++ + V + G ++Q AV SFQ + + I I I A GVGL +++ N
Sbjct: 417 DQLKSYFPTA----VSVTGRDSQDEKQRAVDSFQNNPKTDIIICSIKAAGVGLTLTASSN 472
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
V F+E P + + Q EDRAHR GQ +V Y F + T DE ++ + + ++
Sbjct: 473 VAFVEFPWTYADCCQCEDRAHRIGQKDSVTCYYFLGRRTIDEKVYRIIQNK-KAIAKDVT 531
Query: 664 GKYDALQEIAVEGVSYLEMSDKTDRG 689
G + ++E V+ V+ + +D D G
Sbjct: 532 GSTEDIEENIVDMVANIFSTDYDDEG 557
>gi|422304482|ref|ZP_16391826.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9806]
gi|389790352|emb|CCI13752.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9806]
Length = 1390
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 224/470 (47%), Gaps = 57/470 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLARWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELTVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
+ ACC ++ +L +KLS F E L D+ +K ++
Sbjct: 1198 VEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------DLLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLEQRQIKYQYLDGSTPAGDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEE 1352
>gi|326678434|ref|XP_003201057.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3,
partial [Danio rerio]
Length = 270
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 139/244 (56%), Gaps = 15/244 (6%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278
C+IADEMGLGKT+QAI++A F +L+V P+ L+ W EELE+W+P P DI+LV
Sbjct: 3 CMIADEMGLGKTIQAISVAYIFKQEWPLLIVVPSSLKYPWIEELEKWIPELDPRDINLVE 62
Query: 279 GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPE 334
+ T +V ++ Y +L ++++E Q +A+++VDESH++ ++
Sbjct: 63 SKTDTMSISTS--KVTILGYGLLTTDARALLEALNKQQFAVVLVDESHYL----KSRNAA 116
Query: 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
K ++ + KR +LL+GTP+L RP ++F QI+ L+P G D+A YC+
Sbjct: 117 RSKILVPIIQSAKRAILLTGTPALGRPEELFMQIDALYPRRFGTWS-DYANKYCNAHY-- 173
Query: 395 GYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
Y G Q +G L+EL+ L + +MIRRLK +L QLPPK RQ I L +
Sbjct: 174 RYFGARRQWDCRGASHLDELHKRLSE-IMIRRLKNQVLTQLPPKIRQRIPFDLPKDAAKE 232
Query: 454 AKAA 457
A A+
Sbjct: 233 ASAS 236
>gi|443653954|ref|ZP_21131197.1| SNF2 family N-terminal domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159028978|emb|CAO87439.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443333935|gb|ELS48471.1| SNF2 family N-terminal domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 1390
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/509 (27%), Positives = 240/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLAQWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDHRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L ++ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFAEILD--------------ELLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L V+ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIVRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|425471486|ref|ZP_18850346.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9701]
gi|389882614|emb|CCI36936.1| Genome sequencing data, contig C316 [Microcystis aeruginosa PCC 9701]
Length = 1390
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 241/509 (47%), Gaps = 66/509 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +QLEG R+ R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 924 EVPSTLQAELRDYQLEGFRWLARLAQWGAGACL-ADDMGLGKTLQALAVILTRASEGPTL 982
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+ P + L+W E ER+ P I L G R + + ++V SY +L + +
Sbjct: 983 AIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQALLDRLQPFDLLVCSYGLLQQEEVA 1040
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ +W +++DE+ ++ +KR+ KA +++ K I +GTP L
Sbjct: 1041 TMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAMNLRGDFKLIT--TGTPIENHLGE 1092
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + + + E+L L++
Sbjct: 1093 LWNLFRFIN---PGLLGSLE-SFDRRFATP----------IEKYGDKTAREQLKKLVR-P 1137
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LPP+ ++ + L E +A A+ +++S+ A
Sbjct: 1138 FLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEALRRRALEKLSESDSTAGAKHLQVL 1197
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC ++ +L +KLS F E L ++ +K ++
Sbjct: 1198 AEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD--------------ELLDNQHKALV 1243
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L ++ ++ ++ I + +DG+T DRQ V +FQ + E + +I + AGG G
Sbjct: 1244 FSQFVDHLAIIRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQ-AGEGDVFLISLKAGGTG 1302
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES------HWQ 649
L+ ++A V+ L+ +P++ QA DRAHR GQ V IY AKDT +E H +
Sbjct: 1303 LNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKDTIEEKIVDLHHHKR 1362
Query: 650 NLNKSLRCVSSATNGKY--DALQEIAVEG 676
+L SL + A+ GK D L + EG
Sbjct: 1363 DLADSLLEGTDAS-GKLSTDELLRLMAEG 1390
>gi|374375492|ref|ZP_09633150.1| SNF2-related protein [Niabella soli DSM 19437]
gi|373232332|gb|EHP52127.1| SNF2-related protein [Niabella soli DSM 19437]
Length = 1253
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 132/514 (25%), Positives = 233/514 (45%), Gaps = 74/514 (14%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GS 245
P+ L V+ P+Q+ G ++ + GG ++AD+MGLGKT+QA++ +
Sbjct: 785 PEHLQTVLRPYQMAGFQWINYLRNVNWGG--ILADDMGLGKTVQALSYLEHYKQEHPDAK 842
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
ILV+CP L +W E++++ P L IH N + + V++ +Y L
Sbjct: 843 ILVICPTTLIYNWENEIKKFTP-SLSYRIHHGPTRTRNTEDIVK-QDVIITTYGTLRSDI 900
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
K + + ++DES ++ SK T KA + AK + + +SGTP + +D
Sbjct: 901 KLFVGIPFDYAVLDESQAIKNPASKVT------KAAYLINAKHR--ICMSGTPLQNNTFD 952
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
I+ Q+N L PG+LG ++ F + + G + R E L LL ++
Sbjct: 953 IYAQMNFLNPGMLGSIEF-FRQEFAIPIDKLG----------EADRKEHLRKLL-YPFIL 1000
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR K+ + LP K+ I+ +A I D+ ++ DK
Sbjct: 1001 RRTKEQVAKDLPEKQEMILW--------CEMEAEQRSIYDAYRNDYRDKI---------- 1042
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPV-----------------IAESDGAADIDV 526
LG I Q +G ++++ + + + + I + +I
Sbjct: 1043 -----LGNIEAQGIGRSQMTILQGLMKLRQICDSPAILNEEESFENHSIKIDELVREISE 1097
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
N +K +IF+ L +L +++ + E GI + DG+T DR+ A+ SFQ + EV++ +
Sbjct: 1098 NMGDHKALIFSQFLGMLGLIRQKMDELGIKYEYFDGSTSAPDREKAIQSFQKNEEVRVFL 1157
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGGVGL+ ++A V ++ +P++ QA DR HR GQT + Y KDT ++
Sbjct: 1158 ISLKAGGVGLNLTAADYVYIVDPWWNPAVEQQAIDRTHRIGQTKNIFAYRMICKDTIEDK 1217
Query: 647 HWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
+ +K + + ++ + E V YL
Sbjct: 1218 ILKLQDKKKALAKDLISDESGFVKSLTREDVEYL 1251
>gi|386876202|ref|ZP_10118331.1| SNF2 family N-terminal domain protein [Candidatus Nitrosopumilus
salaria BD31]
gi|386805983|gb|EIJ65473.1| SNF2 family N-terminal domain protein [Candidatus Nitrosopumilus
salaria BD31]
Length = 570
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 216/469 (46%), Gaps = 65/469 (13%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q ++ + +LV+ P + +W
Sbjct: 110 LLNFQKEGLDFLLKSSGNALLADEMGLGKTVQTLSYVSTEKQTFPVLVIAPLVTLNNWER 169
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI----------------SYTMLHRL 304
E+E++L RN + T P V +I +Y +L +
Sbjct: 170 EIEKFLKK----------KSRNGRIIETESPSVTIIRTGKSQELPKTDIYIINYELLFKR 219
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + ++ DE H++R SK T + + VK + +++ RI L SGTP +R +I
Sbjct: 220 YNDLAKLGIKTIVCDEVHNLR-SKTTQKYKSVKKLAALSSISYRIGL-SGTPIYNRGSEI 277
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ I++L PGLLG K +F + +C V + + + ++ +R E L++ VM+R
Sbjct: 278 WPIIDILKPGLLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLR 329
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV--INDSEKDATNDKTPKDSDEHDD 482
R K +L +L K R E+++A + +N K ++ D+ E
Sbjct: 330 RKKSDVLKELKDKVRY--------KEVIAADTDFYIEELNKIWKKLEEEQKGADT-EFSK 380
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
S + R + Q G+AKL ++ I ES +++F HH +
Sbjct: 381 SASYNRAIQSERQIAGLAKLPHVINFVKNIMEIEES--------------VVVFCHHKII 426
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
+ E + E V I G RQ + FQ E K+ I GI AG VG++ + A+
Sbjct: 427 HKLLNESLQE--FSPVTIIGGQSDTLRQDQIDKFQ-KGESKLMIAGIRAGNVGINLTRAK 483
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
V+F EL SP++ QAEDR HR GQ + V Y T D+ H N+
Sbjct: 484 YVIFAELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGSGTLDD-HVANI 531
>gi|378756194|gb|EHY66219.1| hypothetical protein NERG_00915 [Nematocida sp. 1 ERTm2]
Length = 584
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 218/470 (46%), Gaps = 78/470 (16%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS-------------ILVV 249
P Q+EG++ ++R R LIADEMGLGKTLQAI+IA + I++
Sbjct: 128 PHQIEGIKIAVKRNYRVLIADEMGLGKTLQAISIARTLLETHKSNYDRCNQTKLVYIVIF 187
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT-MLHRLRKSM 308
PA W E ++++ DI + + P V+V SY L ++ K
Sbjct: 188 APASNVQMWINEAKKFISEE-SYDIKNFTPSPPTYQNKAKNPIVLVSSYAGALTKITKID 246
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA--AKVKRIVLLSGTPSLSRPYDIFH 366
+ D L I DES +++ PE +A + V +K+K ++LLSGTP+LS P +++
Sbjct: 247 L-NDVILGIADESQNLK------NPESKRASILVPFLSKLKHVLLLSGTPALSNPNELYT 299
Query: 367 QINMLWPGLLGKAKYDFAKTYCDV-----KTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
QI ++ P L +Y + YC + + QL + + L+EL V+LK+ V
Sbjct: 300 QIKIINPSLFSYLEYH--ERYCRLADNHYNALNPRLKQLVK-YRGSKNLDELKVILKELV 356
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS--DE 479
MIRR+K+ L L K+R ++ +++V + +N + K N KT ++ E
Sbjct: 357 MIRRVKKECL-SLGEKKRILVTF---STDLVKKE-----LNSNLK--INSKTLQNELLSE 405
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
++ S K+S L I +L G K+I+FAHH
Sbjct: 406 YNQSAK----DKVSDLILFIKELK------------MRVKG-----------KVIVFAHH 438
Query: 540 LKVLDGV-QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
++L + QEFI I I G+T R++ F+ + +A++ + A GL
Sbjct: 439 TEILTSIYQEFIKNAVI----ITGSTPKAKRETICTKFKEDLNINLAVLSLKACSTGLTL 494
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
A VVF ELP +P + QAEDR +R GQ V IY A D+ W
Sbjct: 495 VCATTVVFAELPWTPGDLHQAEDRIYRIGQLETVRIYYLIA-SYVDKYMW 543
>gi|423299567|ref|ZP_17277592.1| hypothetical protein HMPREF1057_00733 [Bacteroides finegoldii
CL09T03C10]
gi|408473376|gb|EKJ91898.1| hypothetical protein HMPREF1057_00733 [Bacteroides finegoldii
CL09T03C10]
Length = 578
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 137/513 (26%), Positives = 232/513 (45%), Gaps = 97/513 (18%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-------AACFISAGSILVVCPAILRL 256
+QLEGV++ + RC D+ GLGKTLQAI A + + +LV+CPA L++
Sbjct: 110 YQLEGVQYAIEHK-RCFFGDQPGLGKTLQAICAVVKAHKEAPIYGESFPVLVICPAALKV 168
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP----------RVVVISYTMLHRLRK 306
+W E +++ ++ RN + + V + +Y L++
Sbjct: 169 NWQREFKKFAGMNA-----IILDDRNRQSWQSFYECKKSDGSPLCEVFITNYESLNKFFV 223
Query: 307 SMIEQDWAL----------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
++++ +I+DESH + SK T + + V+ + K KR V
Sbjct: 224 RAVDKESKFTMKSIAFDQRVSLFRSVIIDESHKCKSSK-TQQGKFVEGI----CKGKRYV 278
Query: 351 L-LSGTPSLSRPYDIFHQINMLWPGLL----GKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
L+GTP ++ D+ Q+ +L G L G ++Y + YCD
Sbjct: 279 FALTGTPVVNNNTDLIQQLKIL--GRLEDFGGYSRY--VERYCDGP-------------K 321
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDS 464
+ ++ELN L T RR K +L QLP K RQ + + + E +A+A +
Sbjct: 322 QASNVKELNWRLWNTCFFRREKSKVLTQLPDKTRQYLTVDITTTKEYKAAEADMVKYLKK 381
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
K+A++ + K + GA ++ Q K+ E+ +H VI DG
Sbjct: 382 YKNASDAQVQKSMN-----GAVMVQMQLLKQISARGKIKAVCEF--VHDVI---DGG--- 428
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF---VRIDGNTLPRDRQSAVHSFQLSNE 581
K+I+F + ++E ++E F V + G+ +Q AV SFQ + +
Sbjct: 429 ------EKLILFGY-------LKEVVAELKKEFPKAVTVTGSDNVNQKQYAVDSFQNNPD 475
Query: 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
K+ I+ +GG GL ++A V F+E P + S QAEDRAHR GQ + VN Y F KD
Sbjct: 476 CKLIILNFKSGGTGLTLTAASRVAFIEFPWTFSDCEQAEDRAHRNGQKNNVNCYYFLGKD 535
Query: 642 TTDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
T D+ + ++ ++ + +++ G D ++E V
Sbjct: 536 TIDKYMY-DVIQTKKNIANGVTGTDDQVEENMV 567
>gi|319642264|ref|ZP_07996923.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
gi|317386120|gb|EFV67040.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
Length = 559
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 138/516 (26%), Positives = 225/516 (43%), Gaps = 65/516 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P L P+QL+G+ GL+ R + DE GLGKTLQ+IA +A LV+CP+
Sbjct: 89 IPHLLKVTPYPYQLKGIARGLQLK-RFMNCDEPGLGKTLQSIATIN-LGNAFPCLVICPS 146
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL--TRFPRVVVISYTMLHRLRKSMI- 309
L+++W E W F + L R+ T +V +++Y L + I
Sbjct: 147 ALKVNWERE---WHKFTDKKAMVLTDKVRDTWTFFYQTGMYQVFIVNYESLKKYFVQRIK 203
Query: 310 -EQDWAL--------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
E W L +I+DESH RC ++S ++ K + + ++ L+G
Sbjct: 204 KESGWTLRDVEFRNSIQLFKSVIIDESH--RC--KSSSTQQAKFCKGICNGKEWVIELTG 259
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP +++P D+ Q+++L F YC GQ ++ L+ELN
Sbjct: 260 TPVVNKPKDLIPQLSILSRMEDFGGYKTFVNRYC--------SGQ-----NEASNLKELN 306
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+L M RR K +L LP K RQ+ + R E + A+ + + K+A ++K
Sbjct: 307 YMLWTKCMFRREKSLVLTDLPDKIRQVNTCEITNRKEYIDAERDLIMYLQKYKEADDEKI 366
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
K G I Q K+ E++ D K+
Sbjct: 367 EKAL-----RGEVMVRINILRQISARGKVRDVIEFVK--------------DFRENGKKI 407
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
I+F +V+D ++ + V + G ++Q AV SFQ + + I I I A G
Sbjct: 408 ILFCSLHEVVDQLKSYFPTA----VSVTGRDSQDEKQRAVDSFQNNPKTDIIICSIKAAG 463
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGL +++ NV F+E P + + Q EDRAHR GQ +V Y F + T DE + +
Sbjct: 464 VGLTLTASSNVAFVEFPWTYADCCQCEDRAHRIGQKDSVTCYYFLGRRTIDEKVCRIIQN 523
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
+ ++ G + ++E V+ V+ + +D D G
Sbjct: 524 K-KAIAKDVTGSTEDIEENIVDMVANIFSTDYDDEG 558
>gi|336413240|ref|ZP_08593592.1| hypothetical protein HMPREF1017_00700 [Bacteroides ovatus
3_8_47FAA]
gi|335938284|gb|EGN00174.1| hypothetical protein HMPREF1017_00700 [Bacteroides ovatus
3_8_47FAA]
Length = 555
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 226/514 (43%), Gaps = 65/514 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P +L P+QL+G+ GL+ R + DE GLGKTLQ+IA A LVVCP+
Sbjct: 87 VPHNLKIQPYPYQLKGIARGLQLK-RFMNCDEPGLGKTLQSIATIN-LADAFPCLVVCPS 144
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL--TRFPRVVVISYTMLHRLRKSMIE 310
L+++W L W F + L R+ T +V +++Y L + I+
Sbjct: 145 SLKINW---LREWEKFTDKKAMILTDKVRDTWTFFFQTGMHQVFIVNYESLKKYFVQRIK 201
Query: 311 --QDWAL--------------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
+ W L +I+DESH RC +++ ++ K + + ++ L+G
Sbjct: 202 KAEGWTLRDVEFRNSINLFKSVIIDESH--RC--KSASTQQAKFCKGICTGKEWVIELTG 257
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP ++RP D+ Q+ +L F YC GQ + L ELN
Sbjct: 258 TPVVNRPKDLIPQLAILDRMNDFGGYKPFVDRYC--------SGQ-----REASNLRELN 304
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATNDKT 473
L + M RR K +L LP K RQ+ + R E + A+ + + KDA +DK
Sbjct: 305 FNLWKYCMFRREKSLVLTDLPDKIRQVNTCEITNRKEYMDAERDLIMYLQKYKDADDDKI 364
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
K G I Q K+ E++ D K+
Sbjct: 365 AKAM-----RGEVMVRINILRQISARGKVRDVIEFVK--------------DFRENGKKI 405
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
I+F +V+D ++ + V + G ++Q AV +FQ + + I I I A G
Sbjct: 406 ILFCSLHEVVDQLKRYFPTA----VSVTGRDSQDEKQRAVDAFQNNPKADIIICSIKAAG 461
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VGL +++ NV F+E P + + Q EDRAHR GQ +V Y F + T DE ++ + +
Sbjct: 462 VGLTLTASSNVAFVEFPWTYADCCQCEDRAHRIGQKDSVTCYYFLGRRTIDEKVYRIIQE 521
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTD 687
+ +++A G + ++E V+ V+ + +D D
Sbjct: 522 K-KNIANAVTGSTEDIEENIVDMVARIFDTDYDD 554
>gi|359457581|ref|ZP_09246144.1| SNF2 family helicase [Acaryochloris sp. CCMEE 5410]
Length = 1407
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 227/478 (47%), Gaps = 61/478 (12%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
V + +LP +L + +Q EG + R G CL AD+MGLGKTLQA+A+
Sbjct: 935 VQALQPQLPTTLQAELRDYQQEGFEWLARLSHWGVGACL-ADDMGLGKTLQALAVMLTRA 993
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYT 299
G LV+ P + L+W E +R+ P P L FG L + ++V SY
Sbjct: 994 PEGPALVIAPTSVGLNWISEAQRFAPTLRP----LQFGTSQRQELLDQLQPFDLLVCSYG 1049
Query: 300 MLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+L + + + + + +W ++++DE+ ++ +KR+ +A +++ A+ K +L +GT
Sbjct: 1050 LLQQEEVAQMLAQVNWQMIVLDEAQAIKNMTTKRS------QAAMNLQAEFK--LLTTGT 1101
Query: 356 P---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
P L +++F IN PGLLG + + ++ Q Q + Q K
Sbjct: 1102 PIENHLGELWNLFRFIN---PGLLGSMERFNQQFAAPIEKSQDPQAR--QRLKK------ 1150
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDA 468
L Q ++RR K +L +LP + +++ L E+ +A A+ + DS+ A
Sbjct: 1151 ----LIQPFLLRRTKSQVLEELPSRTEITLQVELSEEEMALYEALRRKAIANLADSDAQA 1206
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQEL-GIAKLSGFREWLSIHPVIAESDGAADIDVN 527
++ CC + + AKL F E L ++
Sbjct: 1207 GAKHLQVLAEIMKLRRTCCNAQLVMPESPPASAKLQLFGEVLE--------------ELL 1252
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ + L +Q+++ +K I + +DG+T + RQ V +FQ S E ++ +I
Sbjct: 1253 ANHHKALVFSQFVDHLKILQDYLDKKQIAYQYLDGSTPAKVRQQRVKAFQ-SGEGEVFLI 1311
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E
Sbjct: 1312 SLKAGGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQRRPVTIYRLVAKNTIEE 1369
>gi|429964074|gb|ELA46072.1| hypothetical protein VCUG_02434 [Vavraia culicis 'floridensis']
Length = 792
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 169/337 (50%), Gaps = 38/337 (11%)
Query: 315 LLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
++IVDE H+++ SKRT + +L K+ R+VL+SGTP+LSRP +++ I +L
Sbjct: 447 VIIVDECHYLKNMQSKRT------RTLLPFIKKMNRVVLVSGTPALSRPIELYPLIYVLE 500
Query: 373 PGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
G D+A YC D ++ + F +EL++++ +M+RR K+ ++
Sbjct: 501 ----GFNYNDYANRYCMDGRS----RFNRFMRHKGCSNYDELSLVIGG-MMVRRTKEDVM 551
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
LP K R+ + L E + A GV + + A T + DD
Sbjct: 552 SDLPRKYREHVLL-----ECTGSTAGSGVSSTNNAGAGTGSTSANITSIDDVDHTIMA-- 604
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
Y + KLS + IH I + + +NK++IF HH ++ G+ I+
Sbjct: 605 -LYAQAAEIKLSSVITY--IHNYIHKH-------IKGTANKLVIFCHHKCMITGI---IN 651
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
+G ++IDG+ RQ V+SFQL + +K+A++ IT+ GL+ ++A V+F EL
Sbjct: 652 SLDVGHIKIDGSVSSTIRQRLVNSFQLDDSIKVAVLSITSANTGLNLTAASTVIFSELYW 711
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+P +LQAEDR HR GQ V +Y K T DE W
Sbjct: 712 NPGNLLQAEDRVHRIGQRRDVRVYFLLGKGTVDEMVW 748
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+LPFQ + V + GGR ++AD MGLGKT+QA++IA + +L+V PA L +W +
Sbjct: 267 LLPFQKQSVNKAISNGGRIILADSMGLGKTIQALSIALYYSLEWPLLIVAPASLLDNWRD 326
Query: 261 ELERW--LPFCLPADI 274
E+E++ + C+ DI
Sbjct: 327 EIEKFCGVKVCVVRDI 342
>gi|300709133|ref|XP_002996734.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
gi|239606056|gb|EEQ83063.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
Length = 1243
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/460 (26%), Positives = 207/460 (45%), Gaps = 57/460 (12%)
Query: 200 VILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAI--AACFISAGSILVVCPAIL 254
V+ +QL+GV+ F + ++AD+MGLGKT+Q ++ + + + +LV+CP+ L
Sbjct: 789 VLRKYQLDGVKWINFLYKFNLNGILADDMGLGKTIQVLSFICSEIYATEKKVLVICPSSL 848
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W E++ + P DI + +N +++ISY S I ++W
Sbjct: 849 TGHWKSEIDNFFP-----DIKSICYKKNKNEDYN----ILIISYDSFRNEYLSFINENWF 899
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
+I DE H +R S T + + + KR ++L+GTP + D+ N++ PG
Sbjct: 900 YVIFDEGHILRNSS-TLLYQRINKI-----TCKRKLILTGTPVHNSVEDLVSLFNLIMPG 953
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLLV 432
LG K Y K ++ RLE LN KQ + ++RRLK +L
Sbjct: 954 YLGSVK---EIPYISAKMSDNEMNKIHS------RLENLN---KQILPFILRRLKVDVLT 1001
Query: 433 QLPPKRRQIIRLLL------KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
LPPK IIR +L ++S V+ + + + + +K D A
Sbjct: 1002 DLPPK---IIRDILVEMGPEQKSIYVNIEEDGSSLENVNYKSIQNKCDGLKRTRDLLNAA 1058
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGV 546
+ K+ G + ++++ G DI NK++IF + +D V
Sbjct: 1059 SHILYFKTSSEVSCKMKGLEDIINLY-------GGEDI-----KNKILIFFQYKTTIDFV 1106
Query: 547 -QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
Q+F + + ++R+DG+ R F N + I + GG+GL+ + A V+
Sbjct: 1107 LQDFKKKYNLKYLRLDGSVPASKRAKIALDFNTGN-IPILFLTTHIGGLGLNLTGADTVI 1165
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
F E +P LQA DRAHR GQ + VN++ KD+ +E
Sbjct: 1166 FYEHDWNPFNDLQAMDRAHRIGQKNTVNVFRLITKDSIEE 1205
>gi|342179964|emb|CCC89438.1| putative transcription activator [Trypanosoma congolense IL3000]
Length = 1176
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 151/618 (24%), Positives = 275/618 (44%), Gaps = 85/618 (13%)
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA--- 243
I + P + + P+Q+EGV + L RC+ +ADEMGLGKTLQ IA A
Sbjct: 156 ITESPTYIRGKLRPYQIEGVNWLLGLYSRCINGILADEMGLGKTLQTIAALAYLKFTHGL 215
Query: 244 -GSILVVCPAILRLSWAEELERWLP------FCLPADIHLVFGHRN-NPVHLTRFPRVVV 295
G LVVCPA + +W E+ W P + P+DI F N P ++ +VV
Sbjct: 216 PGPHLVVCPASVMENWCLEIRHWCPAFKVLGYHCPSDIRQRFTRENLMPYENIKYD-IVV 274
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+Y M+ M + W LIVDE+H ++ ++ + LD R+++ +GT
Sbjct: 275 TTYEMVFGELNLMKKIPWQYLIVDEAHKLK-----NDESRAHSTLDAVHSNYRLII-TGT 328
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ-GQLFQDFSKGVRLEELN 414
P + +++ ++ L P L + D +++ D TV G Q + + +
Sbjct: 329 PLQNDLRELWALLHFLAPRLFNDS--DSFESWFD--TVSGQQDSEALTNMHR-------- 376
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKR-------------RQIIRLLLKRSEIVSAKAAVGVI 461
+LL +M+RRLK + +PPK+ R +++L K +++++ K +G +
Sbjct: 377 ILL--PLMLRRLKSEVGTGIPPKKEIYVSCKLTKLQKRLYMQVLAKDADVIN-KNVIGSL 433
Query: 462 NDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
N + + H G + + K SG L D
Sbjct: 434 KGLSDVLMNMRKVIN---HPYMMQGVEEGPPFVTDERLVKYSGKMMLLDKLLHRLLRD-- 488
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
+K++IF+ +LD ++++ + +G RIDG T +R S + +F N
Sbjct: 489 -----ENEKHKVLIFSQFTTMLDILEDYCTMRGFKICRIDGGTSLYNRNSQMAAFNAPNS 543
Query: 582 VK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ I ++ AGGVG++ +A +V+ + +P + LQA+DRAHR GQ V +Y F
Sbjct: 544 DRFIFLLSTRAGGVGINLQAANHVIIYDSDWNPQMDLQAQDRAHRIGQQRLVRVYRFITD 603
Query: 641 DTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVAS 700
T +E +Q AL+++ ++ + + + G+ D++ +++ S
Sbjct: 604 GTLEERMYQR-----------------ALKKLYLDAMVVQQSRVRRRSGNSDMSREEILS 646
Query: 701 SDQF--QELMKV-PESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
+ +F +E+ + E +D + +D +++D +L + + + N+
Sbjct: 647 AIRFGAEEIFRARDEDVTEADIDRLFDDDSKAREVSDAVLHQVQMSLASFRLGADELNLY 706
Query: 758 QYTGRIHLYSCVPGTDSR 775
++ G I S GT+SR
Sbjct: 707 EFEG-IKFRS---GTESR 720
>gi|428673166|gb|EKX74079.1| helicase family member protein [Babesia equi]
Length = 932
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 138/553 (24%), Positives = 258/553 (46%), Gaps = 82/553 (14%)
Query: 194 PKSLLDVILPFQLEGVRF--GLR-RGGRCLIADEMGLGKTLQAIAIAA-----CFISAGS 245
PKSL+ P+QLEG+R+ GL +G ++ADEMGLGKT Q I++ A C I G
Sbjct: 99 PKSLVGTAKPYQLEGLRWLVGLHNKGLNGILADEMGLGKTFQTISLMAYLKESCGID-GP 157
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR-------NNPVHLTRFPRVVVISY 298
LV+ P +W E+ R FC + G++ NN + ++ V+V SY
Sbjct: 158 HLVLAPKSTIGNWINEINR---FCPSLRVLKFIGNKEERAYLINNELDQDKYD-VIVTSY 213
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
+ ++++ + DW +I+DE+H ++ +E ++ V+ + R+ L++GTP
Sbjct: 214 ETCCKTKRALCKLDWKYIIIDEAHRIK-----NEESKLSEVVRMFQTEYRL-LITGTPLQ 267
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL-FQDFSKGVRLEELNVLL 417
+ +++ +N L+P + ++ +F + + V + Q + ++ RL E +
Sbjct: 268 NNLKELWALLNFLFPEVFASSE-EFEQVFDLVGPKELTQAERESRNLQIIARLHE----I 322
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK-D 476
+ M+RR K+ +L ++PPK ++ + L + +D P+
Sbjct: 323 LRPFMLRRSKKDVLTEMPPKNELLLMVPLS-----------AMQKQLYRDLLRKNVPELG 371
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP-------- 528
++++ SG +L ++ Q R+ + HP + DG D + +P
Sbjct: 372 AEDNTKSGLQVQLLNLAMQ---------LRKACN-HPYLF--DGYEDRNDDPFGEHLVEN 419
Query: 529 ---------------RSN-KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
+SN +++IF+ ++LD ++++ +G + RIDGNT DR
Sbjct: 420 AGKLNLVDKLLHRLLKSNSRILIFSQMARMLDILEDYCRMRGYLYFRIDGNTSSEDRDHQ 479
Query: 573 VHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
+ SF +EV I ++ AGG+G++ ++A V+ + +P + LQA DRAHR GQ
Sbjct: 480 ISSFNAPDSEVSIFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAIDRAHRIGQLKP 539
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSAT-NGKYDALQEIAVEGVSYLEMSDKTDRGS 690
V++Y + T +E + L+ S+ +G+ + +A+ + D+
Sbjct: 540 VHVYRLVHEYTIEEKIIERATLKLQLDSAVIQHGRLAQKELLAMVQYGASHIFKAGDKAI 599
Query: 691 EDLTLDQVASSDQ 703
D LD + S Q
Sbjct: 600 TDADLDVILSKGQ 612
>gi|255534042|ref|YP_003094414.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
gi|255347026|gb|ACU06352.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
Length = 964
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 227/489 (46%), Gaps = 73/489 (14%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISA-------GSILVVCPAILRLSWAEELERWLPFC 269
G CL AD+MGLGKT+Q +A+ + L+V P L +W E +++ P
Sbjct: 522 GGCL-ADDMGLGKTIQTLAMLQKLKEEDLEQSKHSTSLIVMPTSLIYNWLNEAKKFTP-- 578
Query: 270 LPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327
IH G N + RF +V+ +Y + + + + ++ +I+DES +++
Sbjct: 579 -KLKIHAHTGTSRNK-DVARFSDFDIVITTYGITRVDIEVLKDFYFSYIILDESQNIKNP 636
Query: 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
S KAV A K + ++LSGTP + D++ Q+ L PGLLG + +
Sbjct: 637 SSKS----FKAVR--ALKSRHRLILSGTPVENSVSDLWTQLTFLNPGLLG------TQAF 684
Query: 388 CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK 447
+ + VQG + + +D K +L+ ++K V+ RR K+ + +LPPK Q+
Sbjct: 685 FNEEYVQGIEKK--KDEEKARKLQ---AIIKPFVL-RRTKEQVASELPPKTEQVF----- 733
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD-----DSGACCRLGKISYQELGIAKL 502
N SE A + K + +D D G + Q + L
Sbjct: 734 ------------YCNMSEDQAAYYEKTKSAYRNDLLNSMDDGTYAK-----KQVQLLQGL 776
Query: 503 SGFREWLSIHPVIAESDGAADI-----------DVNPRSNKMIIFAHHLKVLDGVQEFIS 551
+ R+ L+ HPV+ + +D +V +K++IF+ +K L+ ++++
Sbjct: 777 TALRQ-LANHPVMIDETYTSDSGKFENVVHTLDNVLKGGHKVLIFSQFVKHLNIFRQYLE 835
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
E+ I F +DG T ++R V FQ + +K+ +I I AGGVGL+ + A V L+
Sbjct: 836 EENISFAYLDGAT--KNRGEIVADFQKNTALKVFLISIKAGGVGLNLTEADYVFILDPWW 893
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQE 671
+P++ QA DR HR GQ V IY F AKDT +E N+ R SS + +
Sbjct: 894 NPAVEQQAIDRTHRIGQDKKVFIYKFIAKDTVEEKILALQNRKKRLASSLITTEESFFKS 953
Query: 672 IAVEGVSYL 680
++ E +S L
Sbjct: 954 LSKEDISEL 962
>gi|410621116|ref|ZP_11331969.1| helicase [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410159416|dbj|GAC27343.1| helicase [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 1431
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 223/476 (46%), Gaps = 60/476 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
K+P + + +QLEG + R G CL AD+MGLGKTLQA+A+ G L
Sbjct: 955 KIPSTFQAQLRDYQLEGFDWASRLAHWGAGACL-ADDMGLGKTLQALAVLLSRAGQGPSL 1013
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLH 302
V+ P + +W +E ++ P +I L N + + V+ISY +L
Sbjct: 1014 VIAPTSVCFNWHQEAIKFTP---TLNIKLFADSTNTEQRMGLLNDLNPFDCVIISYGLLQ 1070
Query: 303 RLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---S 357
R + W ++ DE+ ++ +KRT KA + + + K I +GTP
Sbjct: 1071 RETNILKTVQWHTIVADEAQALKNPLTKRT------KAAMALKGEFKMIT--TGTPIEND 1122
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
L+ + +F IN PGLLG K F + + + S+G++ L
Sbjct: 1123 LTELWSLFRFIN---PGLLGNLKR-FGERFSSPIENAKEDKLAARKASQGLKT------L 1172
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDAT--ND 471
Q ++RR+K +L +LPP+ I++ + E +A A+ I+ S + A
Sbjct: 1173 IQPFILRRMKNQVLTELPPRTEINIQVEMSPKERDFYEALRLNAIDNISQSGQQANPGEQ 1232
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
+ ++ ACC K+ E I AKL+ E L ++ VN
Sbjct: 1233 RIRMLAELVKLRQACCN-PKLVMAETDIPSAKLAALSELLD------------ELKVN-- 1277
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
++K +IF+ + L +++ I KG + +DG+T +DRQ V++FQ S E I +I +
Sbjct: 1278 NHKALIFSQFVGHLQLIKKHIEAKGFSYQYLDGSTPQKDRQKRVNAFQ-SGEGDIFLISL 1336
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E
Sbjct: 1337 KAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQKRPVTIYRLIAKNTIEE 1392
>gi|359462769|ref|ZP_09251332.1| SNF2 family helicase [Acaryochloris sp. CCMEE 5410]
Length = 1406
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 128/474 (27%), Positives = 235/474 (49%), Gaps = 65/474 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +Q+EG R+ + G CL AD+MGLGKTLQA+A+ G L
Sbjct: 940 EIPSTLQVQLRDYQIEGFRWLAKLSHWGVGACL-ADDMGLGKTLQALAVILTRAPHGPTL 998
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHR- 303
+V P + ++W +E +R+ P P L F + N HL F +++ SY +L +
Sbjct: 999 IVAPTSVGMNWNKEAKRYAPTLTP----LQFDNSNRQQLLEHLKPF-DMLICSYGLLQQA 1053
Query: 304 -LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---S 357
+ + + + W +++DE+ ++ +KR+ +A + + ++K ++ +GTP
Sbjct: 1054 EVAEMLAQVRWQTIVLDEAQAIKNFSTKRS------QAAMKLQGELK--IITTGTPIENH 1105
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
L +++F IN PGLLG F + + ++ YQ + +++ K L
Sbjct: 1106 LGELWNLFRFIN---PGLLGSLD-SFNQRFA--IPIERYQDKAARNYLKK---------L 1150
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKT 473
Q ++RR K +L +LP + ++++ L E +A A+ +N+S+
Sbjct: 1151 IQPFILRRTKSQVLEELPSRTEIVLQVDLSPEEFAFYEALRQDALAKLNESDAADGPKHI 1210
Query: 474 PKDSDEHDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
++ ACC RL + +L AKL F E L+ ++ ++
Sbjct: 1211 QVLAELMRLRRACCNPRL-VLPETDLPSAKLQLFAEVLN--------------ELLDNNH 1255
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++F+ + L+ ++ F+ E+ + + +DG+T +DR V +FQ + E +I +I + A
Sbjct: 1256 KALVFSQFVDHLEIIRRFLDEQQVPYQYLDGSTPAKDRHKRVDAFQ-AGEGEIFLISLKA 1314
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK T +E
Sbjct: 1315 GGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKGTIEE 1368
>gi|256419374|ref|YP_003120027.1| SNF2-like protein [Chitinophaga pinensis DSM 2588]
gi|256034282|gb|ACU57826.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
Length = 1354
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 142/524 (27%), Positives = 242/524 (46%), Gaps = 66/524 (12%)
Query: 191 GKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSI 246
++P +L + P+Q EG R+ R G CL AD+MGLGKT+QAIA+ G
Sbjct: 886 AEIPATLQTQLRPYQEEGFRWMARLAAWGAGACL-ADDMGLGKTIQAIAMLLYRAHEGPA 944
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLHRLR 305
LVVCPA + +W EL ++ P + + G + + + P VV+I+Y +L
Sbjct: 945 LVVCPASVLPNWVNELYKFAPSL---QVRQIAGSKRHAILKAAGPFDVVLITYGILQSED 1001
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + W +++DE+H ++ + + KA + + A + ++L+GTP + +I+
Sbjct: 1002 ELLSVIPWNTVVLDEAHTIKNYQTKTS----KAAMALQAGFR--LILTGTPVQNHLTEIW 1055
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ N + PGLLG Y F K + + + + + K V M+RR
Sbjct: 1056 NLFNFINPGLLGSLPY-FNKQFT-TPVIYNAESTVTKHLRKIV----------APFMLRR 1103
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K +L +LP K + + L E +A ++ K + DKT K +
Sbjct: 1104 TKTAVLDELPEKTEIVKMISLSPEEAAFYEALRLKAVENIKRYSKDKTSKHNLNTLTEIG 1163
Query: 486 CCRLGKISYQ----ELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
R+ + Q E+ I +KL+ F E ++ E ID N R+ ++F+ +
Sbjct: 1164 KLRMAACNTQMIDPEIRIPSSKLAVFIE------IVKEL-----IDNNHRA---LVFSQY 1209
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+K LD V+ + E + + +DG+T R+ V FQ + + +I + AGG GL+ +
Sbjct: 1210 VKHLDLVRLALDELNVSYCYLDGSTPIPVRERVVKEFQ-AGAGSLFLISLKAGGTGLNLT 1268
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A V+ L+ +P++ QA DRA+R GQT V IY + T +E +
Sbjct: 1269 AADYVIHLDPWWNPAIEEQASDRAYRIGQTRPVTIYRLVTRHTIEEK-----------II 1317
Query: 660 SATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ 703
+ N K D + LE SD + + S D L +A +D+
Sbjct: 1318 ALHNSKRDLADRL-------LEGSDISGKLSTDELLSLIAKADK 1354
>gi|193084170|gb|ACF09835.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
AD1000-207-H3]
Length = 569
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 211/451 (46%), Gaps = 40/451 (8%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ G+ F L+ G L+AD+MGLGKT+Q +A A + +LVV P + +W
Sbjct: 109 LLNFQKMGLDFLLKSSGNALLADDMGLGKTVQTLAYIASEKQSLPVLVVAPLVTLTNWQR 168
Query: 261 ELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
E+ER++ + + + R+ +I+Y +LH+ + + +
Sbjct: 169 EIERFMKKKSKNGRIVEDGVPTITTIRSGKHKELSDYDFYLINYELLHKRQIDLSKLKIR 228
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
L+ DE H+R SK T + VK + + + VK V LSGTP + +I+ +++L PG
Sbjct: 229 TLVCDEVQHLR-SKTTQKYRAVKNLAGMKS-VKYRVGLSGTPIYNHGSEIWPIVDILKPG 286
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
LLG K +F + +C YQ + + + + L +L++ VM+RR K +L +L
Sbjct: 287 LLGNFK-EFCEYFC-------YQDERGKAIVVPSKRDGLRHVLQRDVMLRRKKSDVLKEL 338
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
K R + + E K + N E++ + +T E + R +
Sbjct: 339 KDKVR--YKEAIDADETYYKKELNKIWNKLEEEQKSAET-----EFSKFASYQRAIQSER 391
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
Q G+AKL +++ I ES +++F HH+ + + E + E
Sbjct: 392 QAAGVAKLPHVIDFVKNIMEIEES--------------VVVFCHHISIHKLLHESLQE-- 435
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
I G + RQ + FQ + + K+ I G+ AG +G++ + A+ V+F EL P+
Sbjct: 436 FNPASIIGGQSDKVRQKNIDYFQ-NGDTKLLIAGLRAGNLGINLTRAKYVIFAELDWVPA 494
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ QAEDR HR GQ + V Y K T DE
Sbjct: 495 VHRQAEDRLHRIGQKNTVFAYYLIGKRTLDE 525
>gi|340344677|ref|ZP_08667809.1| SNF2-related protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519818|gb|EGP93541.1| SNF2-related protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 574
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 221/467 (47%), Gaps = 61/467 (13%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q ++ A +LVV P + +W
Sbjct: 114 LLNFQREGLDFLLKSSGNALLADEMGLGKTVQTLSYVATEKQTFPVLVVAPLVTLNNWER 173
Query: 261 ELERWLPFCL----------PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
E+ ++L P + G ++ + +T F +I+Y +L++ + +
Sbjct: 174 EISKFLKKKSRNGRIIESESPTSTIIRTG-KSKELPVTDF---YIINYELLYKRLSDLSK 229
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ ++ DE H++R SK T + + VK + + + RI L SGTP +R +I+ +++
Sbjct: 230 LNIRTIVCDEVHNLR-SKTTQKYKAVKKLAALPSISYRIGL-SGTPIYNRGSEIWPIVDI 287
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PGLLG K +F + +C V + + + ++ +R E L++ VM+RR K +
Sbjct: 288 LRPGLLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKSDV 339
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKA-----AVGVI-NDSEKDATNDKTPKDSDEHDDSG 484
L +L K R E++ A +G I N E++ + +T D S
Sbjct: 340 LKELKDKVRY--------KEVIDADTDYYLDELGKIWNKLEEEQKDAETA-----FDKSA 386
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
+ R + Q GIAK+ ++ I ES +++F HH +
Sbjct: 387 SYQRAIQSERQIAGIAKVPHVINFVKNIMEIEES--------------VVVFCHHKVIHK 432
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ + E V I G + RQ + FQ E K+ I GI AG VG++ + A+ V
Sbjct: 433 LLHTSLEE--FSPVTIIGGQSDKTRQEQIDKFQ-KGESKLMIAGIRAGNVGINLTRAKYV 489
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
+F EL SP++ QAEDR HR GQ + V Y K T D+ H N+
Sbjct: 490 IFAELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGKGTLDD-HVANI 535
>gi|158334343|ref|YP_001515515.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
gi|158304584|gb|ABW26201.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
Length = 1407
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 226/478 (47%), Gaps = 61/478 (12%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
V + +LP +L + +Q EG + R G CL AD+MGLGKTLQA+A+
Sbjct: 935 VQALQPQLPTTLQAELRDYQQEGFEWLARLSHWGVGACL-ADDMGLGKTLQALAVMLTRA 993
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYT 299
G LV+ P + L+W E +R+ P P L FG L + ++V SY
Sbjct: 994 PEGPALVIAPTSVGLNWISEAQRFAPTLRP----LQFGTSQRQELLDQLQPFDLLVCSYG 1049
Query: 300 MLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+L + + + + + W ++++DE+ ++ +KR+ +A +++ A+ K +L +GT
Sbjct: 1050 LLQQEEVAQMLAQVKWQMIVLDEAQAIKNMTTKRS------QAAMNLQAEFK--LLTTGT 1101
Query: 356 P---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
P L +++F IN PGLLG + + ++ Q Q + Q K
Sbjct: 1102 PIENHLGELWNLFRFIN---PGLLGSMERFNQQFAAPIEKSQDSQAR--QRLKK------ 1150
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDA 468
L Q ++RR K +L +LP + +++ L E+ +A A+ + DS+ A
Sbjct: 1151 ----LIQPFLLRRTKSQVLEELPSRTEITLQVELSEEEMALYEALRRQAIANLADSDAQA 1206
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQEL-GIAKLSGFREWLSIHPVIAESDGAADIDVN 527
++ CC + + AKL F E L ++
Sbjct: 1207 GAKHLQVLAEIMKLRRTCCNAQLVMPESPPASAKLQLFGEVLE--------------ELL 1252
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ + L +Q+++ +K I + +DG+T + RQ V +FQ S E ++ +I
Sbjct: 1253 ANHHKALVFSQFVDHLKILQDYLEKKQIAYQYLDGSTPAKIRQLRVKAFQ-SGEGEVFLI 1311
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E
Sbjct: 1312 SLKAGGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQRRPVTIYRLVAKNTIEE 1369
>gi|445114492|ref|ZP_21377954.1| hypothetical protein HMPREF0662_01006 [Prevotella nigrescens F0103]
gi|444840721|gb|ELX67747.1| hypothetical protein HMPREF0662_01006 [Prevotella nigrescens F0103]
Length = 1345
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 227/462 (49%), Gaps = 48/462 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + + G CL AD+MGLGKTLQ IA+ S G+ LV
Sbjct: 885 VPKTLNTQLRDYQEEGFEWLSKVTSWGAGVCL-ADDMGLGKTLQTIALLLEQSSKGASLV 943
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL R+ P L + +R + + VVVI+Y +L+ +K +
Sbjct: 944 VAPASVVPNWRNELRRFAP-TLNVIVLNQSDNRTADIEKVQAGDVVVITYMLLNIEQKIL 1002
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
E +W ++ +DE+H + + + + KA + + K +R V+L+GTP LS +++F
Sbjct: 1003 TEHEWVVVCLDEAHTI----KNANTKMSKAAMQL--KARRKVILTGTPIQNHLSELWNLF 1056
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F + + ++ ++GY + R +L L+ ++RR
Sbjct: 1057 QFIN---PGLLGSAE-QFKQKF--IQPIEGYNDK--------ERQSQLRRLIA-PFLLRR 1101
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD--ATNDKTPKDSDEHDDS 483
K ++ +LP K + + L +EI + ++ + + + N T + +
Sbjct: 1102 TKGEVIKELPDKTDIQLPVELSSNEITMYEMHRKMVEEMVRSDKSLNVSTLAEITKLRQM 1161
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
C L S++ + +KL F + +AES +N N+ ++F+ L
Sbjct: 1162 ACSCSLVDKSWK-VPSSKLLAFID-------LAES-------LNDSGNRALVFSQFTSFL 1206
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+ V+ + + ++ +DG+T R+ V FQ S +I + AGG+GL+ + A
Sbjct: 1207 EEVRYAMDNAQLPYLYLDGSTPMAKREQLVKDFQ-SGRCPFFLISLKAGGLGLNLTGANY 1265
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
VV L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1266 VVHLDPWWNPAIEQQATDRAYRIGQQQDVTVYHLISQHTIEE 1307
>gi|329764968|ref|ZP_08256555.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138505|gb|EGG42754.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 574
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 218/461 (47%), Gaps = 49/461 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q ++ A +LVV P + +W
Sbjct: 114 LLNFQKEGLDFLLKSSGNALLADEMGLGKTVQTLSYVATEKQTFPVLVVAPLVTLNNWER 173
Query: 261 ELERWLPF---------CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
E+ +++ + ++ ++ + +T F +I+Y +L++ + +
Sbjct: 174 EIAKFMKKKSRNGRIIESESSTATIIRTGKSKELPVTDF---YIINYELLYKRLSDLSKL 230
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
+ ++ DE H++R SK T + + VK + + + RI L SGTP +R +I+ +++L
Sbjct: 231 NIRTIVCDEVHNLR-SKTTQKYKAVKKLAALPSISYRIGL-SGTPIYNRGSEIWPIVDIL 288
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG K +F + +C V + + + ++ +R E L++ VM+RR K +L
Sbjct: 289 KPGLLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKSDVL 340
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE-HDDSGACCRLG 490
+L K R E++ A + + KD++ D S + R
Sbjct: 341 KELKDKVRY--------KEVIDADTDYYFDELGKIWTKLEAEQKDAESAFDKSASYQRAI 392
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
+ Q G+AKL ++ I ES +++F HH + + E +
Sbjct: 393 QSERQIAGVAKLPHVINFVKNIMEIEES--------------VVVFCHHKVIHKLLHEKL 438
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
E V I G + RQ A+ FQ E K+ I G+ AG VG++ + A+ V+F EL
Sbjct: 439 GE--FSPVSIIGGQSDKMRQEAIDKFQ-KGESKLMIAGLRAGNVGINLTRAKYVIFAELD 495
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
SP++ QAEDR HR GQ + V Y T D+ H N+
Sbjct: 496 WSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDD-HVANI 535
>gi|428220730|ref|YP_007104900.1| DNA/RNA helicase [Synechococcus sp. PCC 7502]
gi|427994070|gb|AFY72765.1| DNA/RNA helicase, superfamily II, SNF2 family [Synechococcus sp. PCC
7502]
Length = 1407
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 229/474 (48%), Gaps = 63/474 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++PK+L + +Q++G + + G CL AD+MGLGKTLQA+A+ +AG+ L
Sbjct: 938 QVPKNLKAELRDYQIDGFNWMAKLAHWGVGACL-ADDMGLGKTLQALALILSRAAAGATL 996
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-HLTRFPRVVVISYTMLHR--L 304
VV P + L+W E ER+ P + +R V HL F +++ SY +L + +
Sbjct: 997 VVAPTSVCLNWVSEAERFAPDLNIIQFANLDKNRQETVDHLKPFD-LLICSYGLLQQESV 1055
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLS 359
+ + W +++DE+ ++ +KR+ + + + A K I +GTP L
Sbjct: 1056 ATMLAQVQWQTVVLDEAQWIKNFATKRS------QGAMQLQAGFKLIT--TGTPIENHLG 1107
Query: 360 RPYDIFHQINMLWPGLLG---KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+++F IN PGLLG + DFA ++ Q Q + E L L
Sbjct: 1108 ELWNLFRFIN---PGLLGSLERFNQDFANP---IERSQDQQAR-----------ERLRKL 1150
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDK 472
+ Q M+RR K +L +LPP+ ++ + L R EI +A A+ + +S+
Sbjct: 1151 I-QPFMLRRTKSQVLQELPPRTEILLHVDLSRDEIAMYEALRRQAIDRLTNSDATGGAKH 1209
Query: 473 TPKDSDEHDDSGACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
++ CC + Q + +KL F E VI E + ++
Sbjct: 1210 LQMLAEIMKLRRMCCNPQLVMPEQPIPSSKLQLFGE------VIGE--------LLENNH 1255
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++F+ + L ++ ++ ++ I + +DG+T ++R+ V +FQL + + +I + A
Sbjct: 1256 KALVFSQFVDHLQIIRAYLDQQNISYQYLDGSTPAKERKKRVDAFQL-GQGDVFLISLKA 1314
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ + A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E
Sbjct: 1315 GGTGLNLTEADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKNTIEE 1368
>gi|393796694|ref|ZP_10380058.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia BG20]
Length = 570
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 218/461 (47%), Gaps = 49/461 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G L+ADEMGLGKT+Q ++ A +LVV P + +W
Sbjct: 110 LLNFQKEGLDFLLKSSGNALLADEMGLGKTVQTLSYVATEKQTFPVLVVAPLVTLNNWER 169
Query: 261 ELERWLPF---------CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
E+ +++ + ++ ++ + +T F +I+Y +L++ + +
Sbjct: 170 EIAKFMKKKSRNGRIIESESSTATIIRTGKSKELPVTDF---YIINYELLYKRLSDLSKL 226
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
+ ++ DE H++R SK T + + VK + + + RI L SGTP +R +I+ +++L
Sbjct: 227 NIRTIVCDEVHNLR-SKTTQKYKAVKKLAALPSISYRIGL-SGTPIYNRGSEIWPIVDIL 284
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG K +F + +C V + + + ++ +R E L++ VM+RR K +L
Sbjct: 285 KPGLLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKSDVL 336
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE-HDDSGACCRLG 490
+L K R E++ A + + KD++ D S + R
Sbjct: 337 KELKDKVRY--------KEVIDADTDYYFDELGKIWTKLEAEQKDAESAFDKSASYQRAI 388
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
+ Q G+AKL ++ I ES +++F HH + + E +
Sbjct: 389 QSERQIAGVAKLPHVINFVKNIMEIEES--------------VVVFCHHKVIHKLLHEKL 434
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
E V I G + RQ A+ FQ E K+ I G+ AG VG++ + A+ V+F EL
Sbjct: 435 GE--FSPVSIIGGQSDKMRQEAIDKFQ-KGESKLMIAGLRAGNVGINLTRAKYVIFAELD 491
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
SP++ QAEDR HR GQ + V Y T D+ H N+
Sbjct: 492 WSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDD-HVANI 531
>gi|193084404|gb|ACF10057.1| SNF2-related protein [uncultured marine crenarchaeote
SAT1000-21-C11]
Length = 569
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 213/456 (46%), Gaps = 50/456 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ G+ F L+ G L+AD+MGLGKT+Q +A A + +LVV P + +W
Sbjct: 109 LLNFQKMGLDFLLKSSGNALLADDMGLGKTVQTLAYIASEKQSSPVLVVAPLVTLTNWHR 168
Query: 261 ELERWLPF----------CLPADIHLVFGHRNN-PVHLTRFPRVVVISYTMLHRLRKSMI 309
E+ER++ +P + G + P H +I+Y +L++ + +
Sbjct: 169 EIERFMKKKSRNGRIVEDGVPTITSIRSGKQKEIPDH-----DFYLINYELLYKRQIDLS 223
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ L+ DE H+R SK T + +K + + + +K V LSGTP + +I+ ++
Sbjct: 224 KLKIRTLVCDEVQHLR-SKTTKKYRAIKKLARMKS-IKYRVGLSGTPIYNHGSEIWPIVD 281
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+L PGLLG K +F + +C YQ + + + + L +L++ VM+RR K
Sbjct: 282 ILKPGLLGTFK-EFCEYFC-------YQDERGKAIVVPSKRDSLRHVLQRDVMLRRKKSD 333
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L +L K R + + E + + E++ + +T E + R
Sbjct: 334 VLKELKDKVR--YKETIDADETYYKNELNKIWSKLEEEQKSAET-----EFSKVASYQRA 386
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+ Q G+AKL H VI +I+ +++F HH + + E
Sbjct: 387 IQSERQAAGVAKL---------HHVIDFVKNIMEIE-----ESVVVFCHHKSIHKLLHES 432
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ E I G + RQ + +FQ + K+ ++G+ AG +G++ + A+ V+F EL
Sbjct: 433 LQE--FNPAAIIGGQTDKVRQENIDNFQ-NGGTKLIVVGLRAGNLGINLTRAKYVIFAEL 489
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
SP++ QAEDR HR GQ + V Y K T DE
Sbjct: 490 DWSPAIHRQAEDRLHRIGQKNTVFAYYLIGKRTLDE 525
>gi|126660084|ref|ZP_01731204.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
gi|126618604|gb|EAZ89353.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
Length = 1400
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 134/492 (27%), Positives = 226/492 (45%), Gaps = 85/492 (17%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAAC 239
+ + E KLP + + +QLEG + R G CL AD+MGLGKT+QA+A
Sbjct: 928 QAMHEFTPKLPSTFQGELRDYQLEGFHWLARLSHWGVGACL-ADDMGLGKTIQALAAILT 986
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVIS 297
S G L+V P + +W +E ++ P P ++FG N L +++ S
Sbjct: 987 RASDGPTLIVAPTSVCFNWIDECFKFAPTLNP----ILFGSGNRQEILDNLQPFDLLICS 1042
Query: 298 YTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
Y +L + + + E W +++DE+ ++ +KR+ +A + + + K I +
Sbjct: 1043 YGLLQQDSVAAMLAEVSWQTIVLDEAQFIKNMTTKRS------QAAMKLQGQFKLIT--T 1094
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP L +++F IN PGLLG +K F + + ++ Q ++
Sbjct: 1095 GTPLENHLGELWNLFRFIN---PGLLG-SKKQFNDRF--IAPIESDQHKILH-------- 1140
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
++L L+ Q ++RR K +L +LPP+ ++ + L E+ +A
Sbjct: 1141 QQLKHLI-QPFILRRTKTQVLSELPPRTEMLLSVELSNEEMALYEAL-----------RR 1188
Query: 471 DKTPKDSDEHDDSGA----------------CCRLGKI-SYQELGIAKLSGFREWLSIHP 513
D K S E DDSG CC I Y L +KL F+E L
Sbjct: 1189 DSLEKLS-ESDDSGGQKHLQVLAALMKLRRCCCHPSLILDYSSLKGSKLQLFQEILE--- 1244
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
++ +K ++F+ + L V+ + + I + +DG+T ++RQ V
Sbjct: 1245 -----------ELLDNRHKALVFSQFVDHLQIVKSHLERQKISYQYLDGSTPKKERQRRV 1293
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+FQ S E + +I + AGG GL+ ++A V+ L+ +P++ QA DRA+R GQ V
Sbjct: 1294 KAFQ-SGEGDVFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQATDRAYRIGQQRPVT 1352
Query: 634 IYIFCAKDTTDE 645
+Y AKDT +E
Sbjct: 1353 VYRLVAKDTIEE 1364
>gi|378755308|gb|EHY65335.1| transcription regulator [Nematocida sp. 1 ERTm2]
Length = 1379
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 228/495 (46%), Gaps = 65/495 (13%)
Query: 180 HLSDEVVDEMIGK--LPKSLLDVIL-PFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQA 233
H + + VD ++ + L K+ ++V L +Q +GV + LR+ G ++ D+MGLGKT+Q
Sbjct: 867 HKAQKRVDSLMKQDDLSKATMNVSLREYQQKGVEWIGFLRKSGLSGMLCDDMGLGKTIQV 926
Query: 234 IAIAACF---ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
+A A + +LV+CP+ L W E+E P A I G
Sbjct: 927 LAFLALHEKNCAEKGVLVLCPSALTGHWHMEIESNFPTLSSAGIDEFTG----------- 975
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
V V S+ ++ W L++DE H +R S T + VK + K + +
Sbjct: 976 SGVCVASFDKFRMNYTKFVQHSWFYLVLDEGHIIRNSN-TLLHQRVKMI-----KAESKL 1029
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVR 409
LLSGTP + +++ ++L PG LG+ K DF+K Y ++ + +G L ++
Sbjct: 1030 LLSGTPIQNTVGELWALFDILMPGFLGREK-DFSKEYIKPIEKAREGKGTLHDAEIAKIK 1088
Query: 410 LEEL--NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD 467
LE L +VL ++RR+K+ +L LPPK +I + E V K + + E
Sbjct: 1089 LENLHKSVL---PFILRRMKEAVLSDLPPK---VISDIYVELEEVQRKVYDEISVEGESG 1142
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA--ESDGAAD-- 523
KT S + CRL K ++ LSG + +I E + A
Sbjct: 1143 GEYGKTTAKSG---NFSLLCRLIKTCSH---LSLLSGDE----VPQIITGKEKNTAPSGK 1192
Query: 524 -------IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF-----VRIDGNTLPRDRQS 571
+ V ++K++IF + +D I E G F +R+DG DR S
Sbjct: 1193 VLALLDLLKVMANTSKILIFCQYKVTID---RLIKEVGAAFPEVKWLRLDGTVKGDDRSS 1249
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
F E+ I + AGG+GL+ + A +V+F E +P + LQA DRAHR GQ +
Sbjct: 1250 LAKKFNADPEISIMYLTTHAGGLGLNLTGADSVIFFEHDWNPMMDLQAMDRAHRIGQKKS 1309
Query: 632 VNIYIFCAKDTTDES 646
VN++ +K+T +ES
Sbjct: 1310 VNVFRLISKNTIEES 1324
>gi|193084005|gb|ACF09679.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
AD1000-202-A2]
Length = 569
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 212/467 (45%), Gaps = 72/467 (15%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F L+ G+ L+ADEMGLGKT+Q +A A + LV+ P + +W
Sbjct: 109 LLNFQKEGLDFLLKSTGKALLADEMGLGKTVQTLAYIASEKQSLPALVIAPLVTLNNWQR 168
Query: 261 ELERWLP----------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
E+ +++ +P + G + P+ F +I+Y +LH+ + E
Sbjct: 169 EIGKFMKKKSGNGRIIENGIPTSTMIRKG-KEEPIGDFDF---YIINYELLHKRLNDLSE 224
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ L+ DE H+R SK T + VK + + + VK V LSGTP +R +I+ +++
Sbjct: 225 LNIRTLVCDEVQHLR-SKTTQKYAAVKNIAAMKS-VKYRVGLSGTPIYNRGSEIWPIVDI 282
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PGLLG K +F + +C Y + + + L LL VM+RR K +
Sbjct: 283 LKPGLLGNFK-EFCEYFC-------YLDERGKAIVVPSKRNGLRHLLTDHVMLRRKKSDV 334
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
L +L K R +EI+ A + +D N K +E + L
Sbjct: 335 LKELKEKVRY--------TEIIDAD------KNYYQDELNKIWSKLENEQK-TAETEFLK 379
Query: 491 KISYQEL--------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
SYQ G+AKL E++ I ES +++F HH +
Sbjct: 380 HASYQRAIQSERQAAGVAKLPSVIEFVKNIMEIEES--------------VVVFCHHKAI 425
Query: 543 L----DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ +QEF IG G T + RQ + FQ + K+ I G+ AG +G++
Sbjct: 426 HRLLHESLQEFHPSSIIG-----GQT-DKVRQLNIDRFQ-DGDTKLMIAGLRAGNLGINL 478
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A+ V+F EL SP++ QAEDR HR GQ + V Y T DE
Sbjct: 479 TRAKYVIFGELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDE 525
>gi|381395125|ref|ZP_09920831.1| helicase [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379329224|dbj|GAB55964.1| helicase [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 1428
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/476 (28%), Positives = 221/476 (46%), Gaps = 60/476 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
K+P + + +QL G + R G CL AD+MGLGKTLQA+A+ + G L
Sbjct: 952 KIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAVLLARANKGPSL 1010
Query: 248 VVCPAILRLSWAEELERWLPFC---LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
V+ P + +W +E ++ P L AD + L F V+ISY +L R
Sbjct: 1011 VIAPTSVCFNWQQEACKFTPTLNIRLFADSNTTLQREELLSQLGPFD-CVIISYGLLQRE 1069
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLS 359
+ E W +I DE+ ++ +KRT KA + K I +GTP L+
Sbjct: 1070 SDILKEVQWHTIIADEAQAIKNPLAKRT------KAAYALKGDFKMIT--TGTPIENDLT 1121
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+ +F IN PGLLG K + ++ + + + S+G++ L Q
Sbjct: 1122 ELWSLFRFIN---PGLLGNVKRFGTRFSLPIENAKEKPLEA-RKASQGLKA------LIQ 1171
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
M+RR+K +L +LP R I + +K S+ A +N + + +T K ++
Sbjct: 1172 PFMLRRMKNQVLTELPS--RTEINIPVKMSDKEQAFYEALRLNAIDNISQGGQTSKPGEQ 1229
Query: 480 H--------DDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPR 529
ACC K+ E I AKL+ E L+ ++
Sbjct: 1230 RIRMLAELVKLRQACCN-PKLVMAETDIPSAKLAALDELLT--------------ELKLN 1274
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
++K +IF+ + L +++ I KG+ + +DG+T +DRQ V++FQ + E + +I +
Sbjct: 1275 NHKALIFSQFVGHLKLIKQHIESKGLSYQYLDGSTPQKDRQKHVNAFQ-NGEGDVFLISL 1333
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +E
Sbjct: 1334 KAGGSGLNLTAADYVIHMDPWWNPAVENQASDRAHRMGQKRPVTIYRLITQNTIEE 1389
>gi|344338681|ref|ZP_08769612.1| SNF2-related protein [Thiocapsa marina 5811]
gi|343801263|gb|EGV19206.1| SNF2-related protein [Thiocapsa marina 5811]
Length = 1383
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/524 (26%), Positives = 243/524 (46%), Gaps = 83/524 (15%)
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEV--------------------VDEMIGKLPKSLLDV 200
+E L DTGR++P +++ + V+++ ++P +L
Sbjct: 867 LEGLRGLTDTGRFHPLAAPAIAEAIDGMTLDADKAWQSLLDRLAAVEDLEPEIPSTLQAE 926
Query: 201 ILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
+ +Q+EG R+ R G CL AD+MGLGKTLQA+ + G LV+ P +
Sbjct: 927 LRDYQIEGYRWLARLAHWSAGACL-ADDMGLGKTLQALTLILSRAPKGPTLVLAPTSVCG 985
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIEQDWA 314
+W +E +R+ P P L FG + L +++ SY +L + + W
Sbjct: 986 NWVDEAQRFAPTLQP----LRFGPGDRAAMLDAAGPFDLIICSYGLLQTEGERLAAVSWE 1041
Query: 315 LLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQIN 369
++ DE+ + +KR+ +A++ + + I +GTP L +++F IN
Sbjct: 1042 TIVADEAQSFKNALTKRS------QAIMRLKGGFRMIT--TGTPVENHLGELWNLFRFIN 1093
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
PGLLG + F + + + Q+ G R + L LL+ ++ RRLK
Sbjct: 1094 ---PGLLGSLET-FNRRFAT---------PIEQNKDAGAR-QRLRQLLRPFIL-RRLKSE 1138
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDAT--NDKTPKDSDEHDDS 483
+L +LPP+ +RL L E+ +A AV ++D E A + ++
Sbjct: 1139 VLSELPPRTEITLRLELSDGELALYEAMRRQAVERLSDPEAAANPGQQRIQLLAEIMRLR 1198
Query: 484 GACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
ACC RL + +L AKL F E L ++ +K ++F+ +
Sbjct: 1199 RACCHPRLA-LPDSDLSSAKLDAFNEILD--------------ELLENRHKALVFSQFVD 1243
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
L ++ + +GI + +DG+T R++AV +FQ + E + +I + AGGVGL+ ++A
Sbjct: 1244 HLALIRAHLDARGIRYQYLDGSTPEPQRRAAVAAFQ-AGEGDLFLISLRAGGVGLNLTAA 1302
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ ++ +P++ QA DRAHR GQ V +Y AK+T +E
Sbjct: 1303 DYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTVYRLVAKNTIEE 1346
>gi|326797956|ref|YP_004315775.1| SNF2-like protein [Sphingobacterium sp. 21]
gi|326548720|gb|ADZ77105.1| SNF2-related protein [Sphingobacterium sp. 21]
Length = 1121
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/466 (26%), Positives = 233/466 (50%), Gaps = 46/466 (9%)
Query: 192 KLPKSLLDVILPFQLEGVRF--GLRR--GGRCLIADEMGLGKTLQAIAIAACFI---SAG 244
K+P+ + + P+QL+GV++ L R G CL AD+MGLGK++Q IA +G
Sbjct: 652 KIPEGFIGKLRPYQLDGVKWLHSLSRLGFGGCL-ADDMGLGKSIQIIAFLLLKKEEGKSG 710
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISY-TMLHR 303
+ L+V PA L +W +E E++ P I L G + + H VV+ +Y TM+
Sbjct: 711 TNLIVVPATLLTNWLQEFEKFAP---SLRIFLWHGGQRDQNHTIDSWDVVLTTYGTMVSD 767
Query: 304 LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
L + E ++ L +DES H++ S+R +KA + +A ++GTP +
Sbjct: 768 LDRFQ-EIEFDHLFLDESQHIKNPLSQRYRAANRLKAKIKIA--------VTGTPLENNT 818
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+D+F Q++ PGLLG +Y + DV + F + RLEEL +K V
Sbjct: 819 FDLFGQLSFACPGLLGNKRY-----FRDVYSTP------IDKFGENRRLEELLHKIKPFV 867
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
+ RR K ++ LP K ++ + + + + EK+ + + + +E
Sbjct: 868 L-RRTKAEVMDDLPEKTEMVMYCEM-------GEEQRRIYDVYEKEFRSYISAQTEEELS 919
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS--NKMIIFAHH 539
+ A G + +++ + L ++ S P A+ + + ++ RS +K+++F+ +
Sbjct: 920 NKSAVVLKGLMRLRQICNSPLL-LKDKYSNVPNAAKIEWLIE-EIGQRSVQHKILLFSQY 977
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +LD V++ + ++G+ +++ G+T +DR+ + F+L VK+ ++ + GGVGL+ +
Sbjct: 978 VHMLDLVEDQLHKQGLQTLKMTGSTKVKDREGLIEQFKLDGRVKVFLMSLKVGGVGLNLT 1037
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V ++ +P++ QA DR +R GQ V K+T +E
Sbjct: 1038 EADYVYLIDPWWNPAVEDQAIDRIYRMGQKKNVIAVRLICKETIEE 1083
>gi|118576973|ref|YP_876716.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
A]
gi|118195494|gb|ABK78412.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
A]
Length = 574
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 219/469 (46%), Gaps = 76/469 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F ++ G L+ DEMGLGKT+Q +A + A LVV P + +W
Sbjct: 109 LLDFQKEGLDFLIKSSGNALLVDEMGLGKTVQTLAYLSSERQALPALVVAPLVTLHNWQR 168
Query: 261 ELERW----------LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
E+ER+ L P+ + + G R + F +I+Y +L + + E
Sbjct: 169 EIERFVKKKSKNGRILEDQPPSSVMIRRG-RGGKIGEYDF---YIINYELLDKRLDDLSE 224
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ L+ DE ++R SK T + VK + ++ + +++ V LSGTP +R +I+ +++
Sbjct: 225 LNIKSLVCDEVQNLR-SKSTKKYAAVKKLAELDS-IRQRVGLSGTPIYNRGSEIWPIVDI 282
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PGLLG +F + +C V +G+ +G R E L L++ VM+RR K +
Sbjct: 283 LKPGLLGSYS-EFCEYFCYVNE----KGKAI--VLEGKR-ESLRRELQKHVMLRRKKSDV 334
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
L +L K ++ E++ D+ D K+ D R+
Sbjct: 335 LKELKDK--------VRYKEVI--------------DSDTDYYLKELD---------RIW 363
Query: 491 KISYQELGIAKLSGFREWLSIHPVIA---ESDGAADID--VNPRSNKM------IIFAHH 539
K +E A+ SGF S+ I ++ GAA I +N N M ++F HH
Sbjct: 364 KKLEEEQKSAE-SGFDRSASLQRAIQSERQAAGAAKIPHIINFVRNIMEIEESVVVFCHH 422
Query: 540 L---KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
K+L GV S V I G R RQ + SFQ K+ I G+ AG VG+
Sbjct: 423 KAIHKILHGVLSEFSP-----VSIIGGQSDRSRQDQIDSFQ-EGRSKLMIAGLRAGNVGI 476
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ S A+ V+F EL SP++ QAEDR HR GQ + V Y T DE
Sbjct: 477 NLSRARYVIFAELDWSPAIHRQAEDRLHRIGQKNTVFAYYLIGNGTLDE 525
>gi|196233486|ref|ZP_03132329.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
Ellin428]
gi|196222482|gb|EDY17009.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
Ellin428]
Length = 815
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 229/491 (46%), Gaps = 60/491 (12%)
Query: 171 GRWNPCRPEHLSDEVVDEMIGKLPK----SLLDVILPFQLEGV---RFGLRRGGRCLIAD 223
RWN E L D I +LP L +V+ +Q GV +F G +IAD
Sbjct: 332 ARWNSW-TETLRD------ITRLPAMPLGDLEEVLRGYQKTGVYWLQFLATHGLAGIIAD 384
Query: 224 EMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN 283
EMGLGKT+QA+A G L+VCP+ L +WA E R+ P + + G
Sbjct: 385 EMGLGKTVQALAFLRAL--GGRALIVCPSSLVFNWAREAARFTP---ERKVLAIVGEGRT 439
Query: 284 PVHLTRFPR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD 341
+ + +V+ SY +L R + + ++A ++DE+ H++ P+ A
Sbjct: 440 KLFGPPLEQAELVITSYPLLRRDVERYRDWEFAAAVLDEAQHIK------NPDSQNAQAA 493
Query: 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
A + K LL+GTP + D++ ++ L PG LG AK DF + Y +
Sbjct: 494 CALRAKNRFLLTGTPIENSLKDLWSLMHFLMPGYLGSAK-DFRERY----------ERDI 542
Query: 402 QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSA---KAA 457
Q+ G + L ++ V+ RR K+ + +LP K Q+ L R + V A KA
Sbjct: 543 QNDPLGATSKRLLQRIRPFVL-RRTKRAVATELPEKIEQVSYCELTSRQKDVYAELVKAT 601
Query: 458 VGVIND--SEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
++D KD + + ACC L + ++ + S E L ++
Sbjct: 602 RRTLSDLAGGKDQGKARIAMLTALLRLRQACCDLRLLGQDDIESEQASAKIELL--RELL 659
Query: 516 AES-DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
AE+ DG ++++IF+ + +L ++E ++E I + +DG+T +DR + V
Sbjct: 660 AEAVDGG---------HRVLIFSQFVSMLTLLREALTEDEIPYCYLDGST--KDRAAEVD 708
Query: 575 SFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
FQ + E +I + AGGVGL+ ++A V+ + +P++ QA DRAHR GQ V
Sbjct: 709 RFQ-AGETPAFLISLKAGGVGLNLTAADTVIHFDPWWNPAVEAQATDRAHRIGQQKVVTA 767
Query: 635 YIFCAKDTTDE 645
Y A+DT +E
Sbjct: 768 YKLIARDTVEE 778
>gi|193084056|gb|ACF09729.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
KM3-86-C1]
Length = 569
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 211/451 (46%), Gaps = 40/451 (8%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ G+ F L+ G L+AD+MGLGKT+Q +A A + +LVV P + +W
Sbjct: 109 LLNFQKMGLDFLLKSSGNALLADDMGLGKTVQTLAYIASEKQSSPVLVVAPLVTLTNWQR 168
Query: 261 ELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
E+ER++ + + + R+ +I+Y +L++ + + +
Sbjct: 169 EIERFMKKKSRNGRIVEDGVPTITSIRSGKHKEISDYDFYLINYELLYKRQIDLSKLKIR 228
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
L+ DE H+R SK T + +K + + + +K V LSGTP + +I+ +++L PG
Sbjct: 229 TLVCDEVQHLR-SKTTKKYRAIKKLAGMKS-IKYRVGLSGTPIYNHGSEIWPIVDILKPG 286
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
LLG K +F + +C YQ + + + + L +L++ VM+RR K +L +L
Sbjct: 287 LLGNFK-EFCEYFC-------YQDERGRAIVVPSKRDGLRHVLQRDVMLRRKKSDVLKEL 338
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
K R + + E + + E++ + +T E + R +
Sbjct: 339 KDKVR--YKETIDADETYYKNELNKIWSKLEEEQKHAET-----EFSKVASYQRAIQSER 391
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
Q G+AKL H VI +I+ +++F HH + + E + E
Sbjct: 392 QAAGVAKL---------HHVIDFVKNIMEIE-----ESVVVFCHHKYIHKLLHESLQE-- 435
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
I G + RQ + +FQ + K+ I+G+ AG +G++ + A+ V+F EL SP+
Sbjct: 436 FNPAAIIGGQSDKVRQENIDNFQ-NGGTKLIIVGLRAGNLGINLTRAKYVIFAELDWSPA 494
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ QAEDR HR GQ + V Y K T DE
Sbjct: 495 IHRQAEDRLHRIGQKNTVFAYYLIGKRTLDE 525
>gi|298376514|ref|ZP_06986469.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
sp. 3_1_19]
gi|298266392|gb|EFI08050.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
sp. 3_1_19]
Length = 563
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 230/496 (46%), Gaps = 67/496 (13%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
P+QL+G+ GL+ R + D+MGLGKTL++IA A LV+CP ++++W E
Sbjct: 105 PYQLQGIARGLQLK-RFINGDDMGLGKTLESIATINK-ADAFPCLVICPNTVKINWQRE- 161
Query: 263 ERWLPFCLPADIHLVFGHRNN-PVHL-TRFPRVVVISYTMLHR--LRKSMIEQDWAL--- 315
W F + L R + P T V +++Y L + +R+ + W L
Sbjct: 162 --WHKFTDKKAMVLTDSVRTSWPFFWQTGMNHVFIVNYESLRKYFVRRINKSEKWTLKDV 219
Query: 316 -----------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+I+DESH V+ ++ ++ K + A + I+LL+GTP +++P D+
Sbjct: 220 EFHNTIKLFKSVIIDESHKVK----STATQQSKFCKGITAGKEWIILLTGTPVVNKPNDL 275
Query: 365 FHQINML-WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
Q+ ++ LG KY F YC G G L+ELN +L +
Sbjct: 276 ICQLAIMDRMNDLGGWKY-FTSRYC-----SGPHG--------ASNLKELNFMLWKHCFF 321
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR K +L QLP K RQI+ EI + K D+E+D + + E DD
Sbjct: 322 RREKSKVLTQLPDKVRQIVT-----CEITNRKE----YQDAERDLVD--YLRRYKEADDE 370
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
L +GI K R + VI D D N + K+I+F + +++
Sbjct: 371 KVQKSLKGEVMVRIGILKDITARG--KLREVI---DFVKDFRENGK--KIILFCNLHEIV 423
Query: 544 DGV-QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
D + Q F S V + G + +Q+A+ +FQ + + + I I A G+ +++
Sbjct: 424 DRLLQAFPSA-----VCVTGRQDMQQKQAAIDAFQRNPKTDVIICSIKAAAAGITLTASS 478
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
NV F+ELP + + QAE RAHR GQ +VN Y + T D+ ++ + + + +S+A
Sbjct: 479 NVAFIELPWTYADCDQAESRAHRIGQKDSVNCYYLLGRKTIDQKLYRIIEEK-KHISNAV 537
Query: 663 NGKYDALQEIAVEGVS 678
G D +Q V+ ++
Sbjct: 538 LGAKDNIQTNIVDMMA 553
>gi|223936025|ref|ZP_03627939.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
gi|223895247|gb|EEF61694.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
Length = 1046
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 137/514 (26%), Positives = 236/514 (45%), Gaps = 68/514 (13%)
Query: 194 PKSLLDVIL-PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GS 245
P LD +L P+Q EGV +F G ++ADEMGLGKTLQ +AI S
Sbjct: 574 PLGELDSVLRPYQKEGVAWLQFLRDNGFGGILADEMGLGKTLQVLAIINALRSLKNLNAP 633
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTM 300
+LVVCP L +WA E ++ P ++ +V H P + F + V+ SY +
Sbjct: 634 VLVVCPTSLVFNWAAEAAKFTP-----ELRVVALH--GPQRHSLFAEISQKDLVITSYAL 686
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L R + ++ +++DE+ H++ +++T + VK++ + +R ++L+GTP +
Sbjct: 687 LRRDAEHYRGLEFDTVVLDEAQHIK-NRQTQNAQAVKSI-----RTRRRLVLTGTPLENS 740
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
D++ + L PG LG A+ DF + Y + V+ ++ + ++ +R
Sbjct: 741 VLDLWSIFDFLMPGYLGSAQ-DFKERY-EAPIVREKNLEVQKRLARRLR----------P 788
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--GVINDSEKDATN--DKTPKD 476
M+RRLK+ + LP K Q+ E+ + A+ V+ S K+ N D +
Sbjct: 789 FMLRRLKREVAKDLPEKIEQV-----SYCELNEGQRALYQQVLEASRKEIVNAVDANGLN 843
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRS 530
A RL +I L L P +E G ++ +V
Sbjct: 844 KSRMVVLTALLRLRQIC------CDLRLLESKLEAKP--SEPSGKVELFGELLEEVVDGG 895
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
+++++F+ +L ++E ++ + I F +DG T +DR V FQ + + + +I +
Sbjct: 896 HRVLVFSQFTTMLGLLRERLAAENIEFCYLDGAT--KDRAQVVERFQRDSRIPVFLISLK 953
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGG GL+ + A V+ + +P++ QA DRAHR GQ V Y + T +E N
Sbjct: 954 AGGTGLNLTGADTVIHFDPWWNPAVEAQATDRAHRIGQKRVVTSYKLITRGTVEEKIL-N 1012
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSD 684
L R + G + L E +S+ E+ D
Sbjct: 1013 LQTRKRALFQGMLGGEEQL----AEALSWEEIQD 1042
>gi|146097991|ref|XP_001468285.1| putative DNA-dependent ATPase [Leishmania infantum JPCM5]
gi|134072652|emb|CAM71368.1| putative DNA-dependent ATPase [Leishmania infantum JPCM5]
Length = 1103
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 140/513 (27%), Positives = 230/513 (44%), Gaps = 80/513 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P + + P+Q+EGV + L RG ++ADEMGLGKT Q IA A G
Sbjct: 159 PSYIRGKLRPYQIEGVNWLLGLFSRGVNGILADEMGLGKTFQTIATIAYLKFTVGMPGPH 218
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W E + W P L H R + V HL R V+V ++ M
Sbjct: 219 LVVCPKSVMGNWYREFKHWCPGLLVYKFHASSDIRPSIVKAHLHPTDRIKYDVIVTTFEM 278
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ W LIVDE+H ++ +E LD R+++ +GTP +
Sbjct: 279 VLDELNLFKRIAWQYLIVDEAHKLK-----NEEGRAHTALDSLQTSHRLII-TGTPLQNN 332
Query: 361 PYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++ ++ L P L ++ +D T+ D + Q QD + L ++ L
Sbjct: 333 LRELWALLHFLAPRLFNDSESFD---TWFDTTSGQ-------QDANVMSNLHKILAPL-- 380
Query: 420 TVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVS-AKAAVGVIND-- 463
MIRRLK + +PPK R + +L K +E+++ A +V + +
Sbjct: 381 --MIRRLKADVSTGIPPKKEIYVSCQLSKKQREWYMNVLAKDAEVLNKAGGSVASLTNVM 438
Query: 464 -SEKDATNDKTPKDSDEHDDSGACC-RLGKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
S + N D E +L + S + + + KL +H + A+ G
Sbjct: 439 MSLRKVINHPYLMDGGEEGPPFVTDEKLVRTSGKMIILDKL--------LHRLRADVQG- 489
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SN 580
+K++IF+ +L+ ++++ + +G + RIDGNT DR S + SF S+
Sbjct: 490 --------KHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYDRDSQMASFNSPSS 541
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ I ++ AGG+G++ +A +V+ + +P + LQA+DRAHR GQ +V +Y F
Sbjct: 542 DYFIFLLSTRAGGLGINLQAANHVILYDSDWNPQMDLQAQDRAHRIGQKRSVRVYRFVTD 601
Query: 641 DTTDESHWQNLNKSL----------RCVSSATN 663
T +E ++ K L R S ATN
Sbjct: 602 GTLEEKMYRRALKKLYLDAVVVQQGRLQSKATN 634
>gi|149200479|ref|ZP_01877493.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
gi|149136441|gb|EDM24880.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
Length = 1021
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 220/470 (46%), Gaps = 54/470 (11%)
Query: 190 IGKLPKSLLDVILPFQLEGVRFGLR-RGGRC--LIADEMGLGKTLQAIAIAACFISAGSI 246
+ +L SL + + +Q++G+ + + + C ++ADEMGLGKT+Q +++ A
Sbjct: 555 LSQLDDSLTEKLRDYQVDGLHWLINMKNANCGAILADEMGLGKTIQTLSMLASLDKTEPC 614
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+VCP+ L +W +E +R+ P I R + +++ SY++L R
Sbjct: 615 LIVCPSSLMDNWQKEAKRFTPQMKTCIISGDSIERKKVIAERHEYDMLITSYSLLRRDMD 674
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + + +++DE+ H++ + S A+ + + + L+GTP + D++
Sbjct: 675 AYAKVRFDTVVLDEAQHIKNHRSQS------ALSCRSLQADSRLALTGTPLENSAADLWS 728
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
L P LLG +K +F + + + Q + L++L + ++RRL
Sbjct: 729 VFEFLSPSLLG-SKKNFEAAFKEDQVNPKAQY---------IALKKL-----RPFILRRL 773
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ +L QLPPK+ Q+I L E K + + +D D+T D
Sbjct: 774 KKDVLPQLPPKQEQVIEFTLSDKEQELYK---NIAENFLQDILQDQTAFSKRRLDILSLI 830
Query: 487 CRLGK-----------ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
RL + +E+ +K F+E + ++ S++ ++
Sbjct: 831 TRLRQTCSHPALLPEEFKAKEIESSKFQLFQELVE--------------EIRDSSHRALV 876
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ +L ++E++ E+GI + +DG+T + RQ V F + ++ ++ + AGG G
Sbjct: 877 FSQFTSMLSLMREWLDEQGIKYCYLDGST--KKRQDLVDQFNEDDSIQFFLLSLKAGGTG 934
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ + A V+ + +P ++ QA DRAHR GQT VNI A++T ++
Sbjct: 935 LNLTGADTVIHYDNWWNPMVVNQASDRAHRIGQTRNVNIIKLVAQNTIED 984
>gi|198428806|ref|XP_002129178.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
intestinalis]
Length = 936
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 134/515 (26%), Positives = 234/515 (45%), Gaps = 85/515 (16%)
Query: 200 VILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAI 253
V+ P+Q+ G ++ ++ADEMGLGKT+Q IA+ + +G LV P
Sbjct: 347 VLRPYQITGFEWLKVLFDNAVNGILADEMGLGKTIQCIAMICRLVKSGFTGPFLVCAPLS 406
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHR----NNPVHLTRFPR-----VVVISYTMLHRL 304
+W E +R+ P H R + HL+ P VVV SY +L R
Sbjct: 407 TICNWINEFKRFAPRIPVLLYHGSAAERCILASTISHLS--PDLGCHPVVVTSYEVLIRD 464
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
R ++ + W LIVDE H ++ + E+KA+ KV +LL+GTP + ++
Sbjct: 465 RPTLGKHSWEYLIVDEGHRIK-NMNCRLIRELKAL-----KVNAKLLLTGTPLQNNLSEL 518
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQ-GYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+ +N L P + + + D+K +Q G + Q QD ++L+++ V ++
Sbjct: 519 WSLLNFLLPEVFNDLST--FEAWFDLKKIQKGIESQQQQDVV--IKLQKILV----PFLL 570
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSE------IVSAKAAVGVINDSEKDATN----DKT 473
RR K + + LPPK+ I+ L S+ IV+ + D +KD N ++
Sbjct: 571 RRTKSDIQIYLPPKKELIVFAPLSESQNEIYQAIVNRTIRQYLHEDKDKDEQNELALERI 630
Query: 474 PKDSDEHD---------DSGACCRLGK-----ISYQELGIAKLSGFREWLSI-----HP- 513
DS++ D S R GK ++Y + + +S + + HP
Sbjct: 631 SNDSNQSDQGFYERETRSSTLATRQGKEREDRMTYDDESVVNVSLSNLMMQLRKCCNHPY 690
Query: 514 ------------------VIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFI 550
+I+ S +D + + +K+++F+ +LD +++F
Sbjct: 691 LIKYPLIPGTDIFRVDEELISSSGKLQLLDRMLPVLKKKGHKILLFSQMTSLLDILEDFC 750
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+ + +VR+DG+T RQ + + ++ I ++ AGG+G++ +SA VV +
Sbjct: 751 NFRNHSYVRLDGSTKCEVRQERIDEYNRDPDLFIFLLSTRAGGLGINLTSADTVVIYDSD 810
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P LQA+DR HR GQT +V IY F + +T D+
Sbjct: 811 WNPQNDLQAQDRCHRIGQTRSVLIYRFVSSNTVDQ 845
>gi|168037602|ref|XP_001771292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162677381|gb|EDQ63852.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 1032
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 122/485 (25%), Positives = 216/485 (44%), Gaps = 77/485 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAA-----CFISAGS 245
P+ + + +QL G+ + +R G ++ADEMGLGKTLQ I++ A C IS G
Sbjct: 161 PQCINGKMREYQLAGLNWLIRLYENGVNGILADEMGLGKTLQTISLLAYLHEYCGIS-GP 219
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP----VHLTRFPRVVVISYTML 301
+VV P +W E+ R+ P P H RN + +F + V S+ M
Sbjct: 220 HMVVGPKSTLGNWMNEIRRFCPVLRPFKFHGNQDERNYQREELLVAGKFD-ICVTSFEMA 278
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI------VLLSGT 355
+ R ++ + W +I+DE+H ++ + AK R+ +L++GT
Sbjct: 279 IKERTALRKFSWRYIIIDEAHRIKNES------------SILAKTMRLFSTNYRLLITGT 326
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEEL 413
P + ++++ +N L P + + A+T+ + + G Q ++ Q K +R
Sbjct: 327 PLQNNLHELWALLNFLLPEI-----FSSAETFDEWFQISGENDQHEVVQQLHKVLR---- 377
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
++RRLK + LPPK+ I+++ + + +A +
Sbjct: 378 ------PFLLRRLKSDVERGLPPKKETILKVGMSTLQKQYYRALL--------------- 416
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI--------- 524
KD D + G RL I+ Q E P + D
Sbjct: 417 QKDMDAINTGGERKRLLNIAMQLRKCCNHPYLFEGAEPGPPYTTGEHLVDTAGKMVLLDK 476
Query: 525 ---DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
+ R ++++IF+ ++LD ++++ + + RIDGNT DR+SA+ F N
Sbjct: 477 LLPKLKQRQSRVLIFSQMTRLLDILEDYCQYRTYQYCRIDGNTTGDDRESAIDQFNAPNS 536
Query: 582 VKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
K ++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC +
Sbjct: 537 EKFCFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 596
Query: 641 DTTDE 645
T +E
Sbjct: 597 FTIEE 601
>gi|51244847|ref|YP_064731.1| helicase [Desulfotalea psychrophila LSv54]
gi|50875884|emb|CAG35724.1| probable helicase [Desulfotalea psychrophila LSv54]
Length = 1399
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 123/467 (26%), Positives = 229/467 (49%), Gaps = 56/467 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
LP +L + +QLEG + R G CL AD+MGLGKTLQ++A+ G LV
Sbjct: 936 LPTTLQAELRDYQLEGFSWLGRLAHWGVGGCL-ADDMGLGKTLQSLALILTLSENGPTLV 994
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P + +W E++++ P L + L G R + +++ +YT+L + + +
Sbjct: 995 VAPTSVANNWRAEVKKFTP-TLKLKV-LAHGDRKKTIEDLGSHDLLITTYTLLQQESELL 1052
Query: 309 IEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
DW +++DE+ ++ +KR+ KA + + AK K I +GTP L ++
Sbjct: 1053 SGVDWQTVVLDEAQAIKNAATKRS------KAAMGLKAKFKLIT--TGTPIENHLGELWN 1104
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+ H +N PGLLG + F + + + +QD +L++ L + ++
Sbjct: 1105 LLHFVN---PGLLGTLQ-SFNENFA-------IPIERYQDREARTKLKK----LIRPFIL 1149
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDE 479
RR+K +L +LPP+ + + + E +A A+ ++ + KD ++
Sbjct: 1150 RRIKSEVLDELPPRTEITLEVQMSEEERHFYEALRQNALDIL-EGNKDRKGRHLQILTEI 1208
Query: 480 HDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
ACC I + +K+ F + V+ E G ++K ++F+
Sbjct: 1209 MKLRQACCNPRLIDKNTSISSSKMKVFGD------VVEELLGG--------NHKALVFSQ 1254
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L ++E++ E+GI + +DG+T + R+ V+ FQ + + + +I + AGG+GL+
Sbjct: 1255 FIGHLHIIREYLDERGISYQYLDGSTSSKMREKGVNDFQ-AGKGDLFLISLKAGGLGLNL 1313
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ ++ +P++ QA DRAHR GQT V +Y +K++ +E
Sbjct: 1314 TAADYVLHMDPWWNPAIEDQASDRAHRIGQTRPVTVYRLVSKNSIEE 1360
>gi|308535304|ref|YP_002139277.2| helicase [Geobacter bemidjiensis Bem]
gi|308052649|gb|ACH39481.2| helicase, putative [Geobacter bemidjiensis Bem]
Length = 1386
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 221/475 (46%), Gaps = 67/475 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP +L + +Q EG + R G CL AD+MGLGKT+QA+A G L
Sbjct: 921 QLPATLQAELRGYQEEGFNWLNRLAHWGVGACL-ADDMGLGKTVQALAQIISMAEGGPSL 979
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLR 305
VV P + L+W E ++ P P +VFG +N L +V+ SY +L +
Sbjct: 980 VVAPTSVCLNWESETLKFAPTLNP----IVFGGQNRAKLLQELKPFDLVICSYGLLQQEG 1035
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + W +I+DE+ ++ +KR+ E+K + A +GTP L
Sbjct: 1036 ELLAAVPWQAIILDEAQAIKNMATKRSQAAMELKGAFKMVA--------TGTPIENHLGE 1087
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG K K ++ QD RL++L Q
Sbjct: 1088 LWNVFRFIN---PGLLGSLKQFNVKFAAPIEKS--------QDKKARARLKKLI----QP 1132
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR K +L +LPP R+EIV + SE++A+ + + S
Sbjct: 1133 FILRRTKNQVLEELPP-----------RTEIVMK------VEMSEEEASLYEAIRKSALD 1175
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREW-------LSIHPVIAESDGA-ADIDVNPRSN- 531
+ +G GK +A++ R L P+ + A +I R N
Sbjct: 1176 NLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDTPIPSTKLAAFGEIVEELRENR 1235
Query: 532 -KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K ++F+ + L+ +++++ + GI + +DG+T P++R+ V +FQ S + +I +
Sbjct: 1236 HKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKKRVDAFQ-SGSGDLFLISLK 1294
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGGVGL+ ++A V+ ++ +P++ QA DRAHR GQ V IY + T +E
Sbjct: 1295 AGGVGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVTRGTIEE 1349
>gi|401427882|ref|XP_003878424.1| putative DNA-dependent ATPase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494672|emb|CBZ29974.1| putative DNA-dependent ATPase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1098
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 140/521 (26%), Positives = 232/521 (44%), Gaps = 96/521 (18%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P + + P+Q+EGV + L RG ++ADEMGLGKT Q IA A G
Sbjct: 159 PSYIRGKLRPYQIEGVNWLLSLFSRGVNGILADEMGLGKTFQTIATIAYLKFTLGMPGPH 218
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W E + W P L H R + V HL R V+V ++ M
Sbjct: 219 LVVCPKSVMGNWYREFKHWCPGLLVYKFHASSDIRPSIVKAHLHPTDRIKYDVIVTTFEM 278
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ W LIVDE+H ++ +E LD R+++ +GTP +
Sbjct: 279 VLDELNLFKRIAWQYLIVDEAHKLK-----NEEGRAHTALDSLHTSHRLII-TGTPLQNN 332
Query: 361 PYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++ ++ L P L ++ +D T+ D + Q QD + L ++ L
Sbjct: 333 LKELWALLHFLAPRLFSDSESFD---TWFDTASGQ-------QDANVMSNLHKILAPL-- 380
Query: 420 TVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVS-AKAAVGVINDSE 465
MIRRLK + +PPK R + +L K +E+++ A +V + ++
Sbjct: 381 --MIRRLKADVSTGIPPKKEIYVSCQLSKKQREWYMNVLAKDAEVLNKAGGSVASLTNAM 438
Query: 466 K------------DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
D + P +DE +L + S + + + KL +H
Sbjct: 439 MSLRKVINHPYLMDGGEEGPPFVTDE--------KLVRTSGKMIILDKL--------LHR 482
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ A+ G +K++IF+ +L+ ++++ + +G + RIDGNT DR S +
Sbjct: 483 LRADVQG---------KHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYDRDSQM 533
Query: 574 HSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
SF S++ I ++ AGG+G++ +A +V+ + +P + LQA+DRAHR GQ +V
Sbjct: 534 ASFNSPSSDYFIFLLSTRAGGLGINLQAANHVILYDSDWNPQMDLQAQDRAHRIGQKRSV 593
Query: 633 NIYIFCAKDTTDESHWQNLNKSL----------RCVSSATN 663
+Y F T +E ++ K L R S ATN
Sbjct: 594 RVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGRLQSKATN 634
>gi|157875048|ref|XP_001685931.1| putative DNA-dependent ATPase [Leishmania major strain Friedlin]
gi|68129004|emb|CAJ06440.1| putative DNA-dependent ATPase [Leishmania major strain Friedlin]
Length = 1103
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 140/513 (27%), Positives = 230/513 (44%), Gaps = 80/513 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P + + P+Q+EGV + L RG ++ADEMGLGKT Q IA A G
Sbjct: 159 PSYIRGKLRPYQIEGVNWLLGLFARGVNGILADEMGLGKTFQTIATIAYLKFTVGMPGPH 218
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W E + W P L H R + V HL R V+V ++ M
Sbjct: 219 LVVCPKSVMGNWYREFKHWCPGLLVYKFHASSDIRPSIVKAHLHPTDRIKYDVIVTTFEM 278
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ W LIVDE+H ++ +E LD R+++ +GTP +
Sbjct: 279 VLDELNLFKRIAWQYLIVDEAHKLK-----NEEGRAHTALDSLQTSHRLII-TGTPLQNN 332
Query: 361 PYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++ ++ L P L ++ +D T+ D + Q QD + L ++ L
Sbjct: 333 LKELWALLHFLAPRLFNDSESFD---TWFDTTSGQ-------QDANVMSNLHKILAPL-- 380
Query: 420 TVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVS-AKAAVGVIND-- 463
MIRRLK + +PPK R + +L K +E+++ A +V + +
Sbjct: 381 --MIRRLKADVSTGIPPKKEIYVSCQLSKKQREWYMNVLAKDAEVLNKAGGSVASLTNVM 438
Query: 464 -SEKDATNDKTPKDSDEHDDSGACC-RLGKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
S + N D E +L + S + + + KL +H + A+ G
Sbjct: 439 MSLRKVINHPYLMDGGEEGPPFVTDEKLVRTSGKMVILDKL--------LHRLRADVQG- 489
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SN 580
+K++IF+ +L+ ++++ + +G + RIDGNT DR S + SF S+
Sbjct: 490 --------RHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYDRDSQMASFNSPSS 541
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ I ++ AGG+G++ +A +V+ + +P + LQA+DRAHR GQ +V +Y F
Sbjct: 542 DYFIFLLSTRAGGLGINLQAANHVILYDSDWNPQMDLQAQDRAHRIGQKRSVRVYRFVTD 601
Query: 641 DTTDESHWQNLNKSL----------RCVSSATN 663
T +E ++ K L R S ATN
Sbjct: 602 GTLEEKMYRRALKKLYLDAVVVQQGRLQSKATN 634
>gi|66357602|ref|XP_625979.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
gi|46227244|gb|EAK88194.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
Length = 908
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 41/309 (13%)
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
H ++ +P L DFA+ Y D + + + + ++F EEL++ ++++VMIRR
Sbjct: 615 HVVSPKFPSYL-----DFAQRYSDTR-INKFSHR--KEFYGSRNTEELHLFIRESVMIRR 666
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK+ +L +LPPK+R I L +K K + +I + D + DE D S +
Sbjct: 667 LKKQVLHELPPKQRSKIPLEIK------DKVGIKMIKELLADPNCQVELSNFDEDDSSSS 720
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
C L K++ E+ I + + E+L + K +IF HH +LD
Sbjct: 721 MCNLHKLTC-EIKINPVQEYIEYL----------------LEYNDEKYVIFGHHHVMLDA 763
Query: 546 VQEFISEK---------GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
++ + +K F+RIDG T R+ V FQ + K+A++ ITA G GL
Sbjct: 764 IESVLLKKRKTACNSGGPFLFIRIDGKTPGNKREEYVKEFQNNENCKVALLSITACGQGL 823
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ +SA V+F EL P MLQAEDR HR G Q S +NI+ A++T D+ W L +
Sbjct: 824 NLTSAGTVIFAELYWVPGTMLQAEDRCHRIGTQYSCINIHYLIAEETLDDKMWGTLCRKQ 883
Query: 656 RCVSSATNG 664
+ ++S +G
Sbjct: 884 KIMASTLDG 892
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 103/178 (57%), Gaps = 10/178 (5%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
L + PFQ G+ GL++ GR LI DEMGLGKTLQA++I F +LV+CP+ +R
Sbjct: 367 LYSSLRPFQKVGILVGLKKHGRVLIGDEMGLGKTLQALSIITYFRQEWPVLVICPSSIRF 426
Query: 257 SWAEELERWL-PFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR--KSMIEQDW 313
W ++ WL P ++I L+ R + +R +++ISY ++ R +S D+
Sbjct: 427 QWYQQALDWLSPEINKSNITLI---RTSNDTYSRKSNIIIISYDLITRNEHFRSFFGSDF 483
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
++I DESH + + S + + ++ + K +R +LLSGTP+L+ P +++ QIN +
Sbjct: 484 QVVIADESHFL----KNSTAKRTQMIVPLLHKARRAILLSGTPALNNPTELYEQINAI 537
>gi|403336465|gb|EJY67431.1| DNA helicase, putative [Oxytricha trifallax]
Length = 2270
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 140/617 (22%), Positives = 264/617 (42%), Gaps = 103/617 (16%)
Query: 73 RVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKL 132
++ LE+ S D FS+ + F E +++L Q D++ + K ++
Sbjct: 181 KIVLELISHDYFSI---KFQKFFNQDCSEMVKQLKQKGKDIINWDVQR-----KQWNVRI 232
Query: 133 RDYNPVLTCLKN-------SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEV 185
+YN +L + + ++++GIP ++ G+ + + D
Sbjct: 233 DEYNDLLQQFTDYLANNPQKSQVDIKGIPNFAFELL--------NGKPLLTQDDQRQDNR 284
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
M G LP S+ D + +Q V G+++ GR +I DEMGLGKTL+++A+A +
Sbjct: 285 TYSM-GNLPPSMRDNLFEYQKNSVILGVKQQGRFMILDEMGLGKTLESLAVAMVYFDEWP 343
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+LVVCP+ ++ W EE+ +W+P P+ I ++ R +V + SY + R +
Sbjct: 344 LLVVCPSQMKNHWREEILKWIPDFDPSQITVM---RKGREAFNDNSKVFITSYKIAAR-Q 399
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVAAKVKRIVLLSGTPSLSRPYDI 364
+S I+ KR P V +L + +K+KR+VL S P + +P +
Sbjct: 400 QSQIQ-----------------KRFQSP--VSRILCPILSKMKRLVLTSSAPLMEKPQHL 440
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQ--GYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ NM+ P + + + +F YC + Q G Q Q E++ +L ++
Sbjct: 441 YNLFNMIRPDIF-QDQMEFISRYCFSRDGQILGPQNQ-----------REMHFILDNKII 488
Query: 423 IRRLKQHLLVQLPP------------KRRQIIRLLLKRSEIVSAKAAVGV-INDSEKDAT 469
R K+ + +PP Q IR++L + + + V + + EK+A
Sbjct: 489 STRKKKDVAHDMPPILKQKLHIKCDLNEMQEIRVILNGRMLSESMQTLFVQLKNIEKEAQ 548
Query: 470 N---------DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG 520
D+ ++ ++D G LG + I +L I ++
Sbjct: 549 RITEIIKCKMDRMSTSANNYNDVGNL--LGSNQKDDQLIDQLFEVSSQARIKGILKT--- 603
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFI----------SEKGIGFVRIDGNTLPRDRQ 570
+ I N + K+I+ A + ++ ++ + +E ++RID NT +Q
Sbjct: 604 VSQILENEQ--KVIVIAQQNQSIEEIENTVRKVFDDQREKNESNYNYIRIDNNTPSDLKQ 661
Query: 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR--RGQ 628
+ +FQ + +K+ I+ + + +SA N++F E + M QA R R
Sbjct: 662 QMIRNFQENPIIKVVILSLATSSLASVLTSASNIIFAETYWNNEQMAQAIFRDARSLNQD 721
Query: 629 TSAVNIYIFCAKDTTDE 645
+N+Y AKD+ DE
Sbjct: 722 QQCLNVYYLYAKDSLDE 738
>gi|375149621|ref|YP_005012062.1| SNF2-related protein [Niastella koreensis GR20-10]
gi|361063667|gb|AEW02659.1| SNF2-related protein [Niastella koreensis GR20-10]
Length = 1257
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 130/505 (25%), Positives = 226/505 (44%), Gaps = 54/505 (10%)
Query: 193 LPKSLLDVILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSI-- 246
LP+ L ++ P+Q G + + G ++AD+MGLGKT+QA++ + S G +
Sbjct: 788 LPEHLKSILRPYQEHGYHWLHYLSEIGWGGILADDMGLGKTVQALSYLNYYRTSHGKLRA 847
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
LVVCP L +W E++++ P L IH G R +++ +Y L K
Sbjct: 848 LVVCPTTLMFNWENEIKKFTP-SLTYYIHHG-GERTRGKEQFMNAEIIITTYGTLRSDIK 905
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
++E + +++DES ++ TS+ + +L + K + LSGTP + +DIF
Sbjct: 906 LLVEVPFDYVVLDESQAIKNP--TSKVTKAACLL----QSKNRICLSGTPLQNNTFDIFA 959
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
Q+N L PG+LG ++ F + + F + R + L LL ++RR
Sbjct: 960 QMNFLNPGMLGSVEF-FRQEFAIP----------IDKFGEADRKDHLRKLL-YPFILRRT 1007
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ + LP K I+ E+ S + A I D+ ++ DK G
Sbjct: 1008 KEQVAKDLPDKIETIL-----FCEMESEQMA---IYDAYRNDFRDKI---------MGTI 1050
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDG-----------AADIDVNPRSNKMII 535
+ G Q + L R+ ++ E++ +I ++K ++
Sbjct: 1051 EQNGIQRSQLTILQGLMKLRQICDSPAILNEAEKFPNHSIKLEELGREITEGVSNHKALV 1110
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ L +L ++E + E + F DG+T DR+ A+ FQ ++ +I + AGGVG
Sbjct: 1111 FSQFLGMLALIKEKLKELEVDFEYFDGSTSAIDRERAIQRFQNDENCRVFLISLKAGGVG 1170
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L+ ++A V ++ +P++ QA DR HR GQT + Y KDT ++ Q +K
Sbjct: 1171 LNLTAADYVYIVDPWWNPAVEQQAIDRTHRIGQTKNIFAYRMICKDTIEDKILQLQDKKR 1230
Query: 656 RCVSSATNGKYDALQEIAVEGVSYL 680
++ + E V YL
Sbjct: 1231 MLAKDLITDDEGFVKSLTREDVEYL 1255
>gi|375146815|ref|YP_005009256.1| SNF2-related protein [Niastella koreensis GR20-10]
gi|361060861|gb|AEV99852.1| SNF2-related protein [Niastella koreensis GR20-10]
Length = 954
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 222/469 (47%), Gaps = 41/469 (8%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAG 244
E + ++P + + P+Q +G + L G +AD+MGLGKTLQ I++ +
Sbjct: 479 ETVYEVPAVINAKLRPYQQKGFEWMLLLAEAGAGACLADDMGLGKTLQTISVLTHQLHEK 538
Query: 245 SI---LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+ L+VCP+ L +W++EL+++ P H G+R T +V++ SY +
Sbjct: 539 ANQRHLIVCPSSLIYNWSQELQKFSPHVKVLIYH--GGNRAIQDAATGDYQVIITSYGTV 596
Query: 302 HRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+ + M ++ +++DESH+++ ++ T E +++ VA LSGTP ++
Sbjct: 597 RQDIEEMCAINFGTVVLDESHNIKNPAAQITKAVERLQSGFRVA--------LSGTPVMN 648
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+D++ Q+N L PG+ G ++ F + Y D + +++ L +
Sbjct: 649 NTFDLYAQLNFLLPGIFGSREF-FRREYADA-------------IDQRRESDKIKTLQRI 694
Query: 420 TV--MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
T ++RR K+ + LP K ++ + ++ K I DS + + ++
Sbjct: 695 TAPFVLRRTKEQVASDLPAKTEMVMWCEMSMAQ----KRLYDEIKDSIRQSVFLNIEQEG 750
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
+ S G + +++ + L E + + + ++ N + +K+++F+
Sbjct: 751 --LNKSKLAVLKGMLKLRQICNSPLLLPSEEQTCNDSVKTDLLMNELQNNLKDHKVLVFS 808
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGL 596
+L+ + E E+GI + +DG+T P RQ V+ FQ +N + +I + AG GL
Sbjct: 809 QFTSMLNLLAENCREQGIAYYHLDGSTPPEKRQELVNQFQAPNNTTNVFLISLKAGNAGL 868
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ ++A V+ + + ++ QA DR HR GQT V Y KDT +E
Sbjct: 869 NLTAASYVILFDPWWNTAVQQQAIDRTHRIGQTKNVFAYKMICKDTIEE 917
>gi|145539934|ref|XP_001455657.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423465|emb|CAK88260.1| unnamed protein product [Paramecium tetraurelia]
Length = 1292
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 125/477 (26%), Positives = 223/477 (46%), Gaps = 65/477 (13%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC----FISAGSILVVCPAILRL 256
FQL+G+++ ++ADEMGLGKT+Q I+ + +G L++ PA +
Sbjct: 401 FQLQGLQWLQKSYETNNNVILADEMGLGKTIQTISFLNFLQYEYKKSGPFLIIGPATILY 460
Query: 257 SWAEELERWLPFCLPADIHLV-----------------FGHRNNPVHLTRFPRVVVISYT 299
+W +EL++W AD V F + NN ++ +F V++ SY
Sbjct: 461 NWLKELKKW------ADTFNVIVYTGNQESRDIIKAKEFYYSNNN-NVCKF-NVLITSYD 512
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+ + + + +W LIVDE+H ++ ++ + K +++ I+LL+GTP +
Sbjct: 513 IAIIDQAIIKKINWECLIVDEAHRLK----NNDSKFFKVCSQFSSQ--HIILLTGTPLQN 566
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
++ + I + P + + K + + + ++ +Q K L ELN LLK
Sbjct: 567 NLQELINLIEFIAPQKVKQLKKEQLNVLFNNQDLEDFQE------VKKTTLTELNSLLKP 620
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++ RR K + +Q+P II+L L + K + N + K D+
Sbjct: 621 HIL-RRTKADVKLQVPEMEEIIIKLCLTDKQKFLYKNVM---------LRNYEKLKVLDQ 670
Query: 480 HDDSGACCRLGKISYQELGIAKLSGF---REWLS--IHPVIAESDGAADID-VNPR---- 529
+ L + L F RE+ + I +I +S+ +D + PR
Sbjct: 671 KKGASKANLLNILMSLRLVCNHPYLFTYKREFPNEDIDEMINQSNKLKFVDRIIPRLLEM 730
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIG 588
+KM+IF+ +LD +Q ++ +G + R+DG T DRQ + SF S + KI ++
Sbjct: 731 QHKMLIFSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRIIDSFNNSTGKSKIFLLS 790
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG+G++ +SA ++F + +P LQA RAHR GQT+ V ++ +K T +E
Sbjct: 791 TRAGGLGINLTSADTIIFTDSDFNPYRDLQAISRAHRMGQTNKVKVFRLVSKYTAEE 847
>gi|398021687|ref|XP_003864006.1| transcription activator [Leishmania donovani]
gi|322502240|emb|CBZ37323.1| transcription activator [Leishmania donovani]
Length = 1103
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 139/513 (27%), Positives = 230/513 (44%), Gaps = 80/513 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P + + P+Q+EGV + L RG ++ADEMGLGKT Q IA A G
Sbjct: 159 PSYIRGKLRPYQIEGVNWLLGLFSRGVNGILADEMGLGKTFQTIATIAYLKFTVGMPGPH 218
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W E + W P L H R + V HL R V++ ++ M
Sbjct: 219 LVVCPKSVMGNWYREFKHWCPGLLVYKFHASSDIRPSIVKAHLHPTDRIKYDVILTTFEM 278
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ W LIVDE+H ++ +E LD R+++ +GTP +
Sbjct: 279 VLDELNLFKRIAWQYLIVDEAHKLK-----NEEGRAHTALDSLQTSHRLII-TGTPLQNN 332
Query: 361 PYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++ ++ L P L ++ +D T+ D + Q QD + L ++ L
Sbjct: 333 LRELWALLHFLAPRLFNDSESFD---TWFDTTSGQ-------QDANVMSNLHKILAPL-- 380
Query: 420 TVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVS-AKAAVGVIND-- 463
MIRRLK + +PPK R + +L K +E+++ A +V + +
Sbjct: 381 --MIRRLKADVSTGIPPKKEIYVSCQLSKKQREWYMNVLAKDAEVLNKAGGSVASLTNVM 438
Query: 464 -SEKDATNDKTPKDSDEHDDSGACC-RLGKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
S + N D E +L + S + + + KL +H + A+ G
Sbjct: 439 MSLRKVINHPYLMDGGEEGPPFVTDEKLVRTSGKMIILDKL--------LHRLRADVQG- 489
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SN 580
+K++IF+ +L+ ++++ + +G + RIDGNT DR S + SF S+
Sbjct: 490 --------KHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYDRDSQMASFNSPSS 541
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
+ I ++ AGG+G++ +A +V+ + +P + LQA+DRAHR GQ +V +Y F
Sbjct: 542 DYFIFLLSTRAGGLGINLQAANHVILYDSDWNPQMDLQAQDRAHRIGQKRSVRVYRFVTD 601
Query: 641 DTTDESHWQNLNKSL----------RCVSSATN 663
T +E ++ K L R S ATN
Sbjct: 602 GTLEEKMYRRALKKLYLDAVVVQQGRLQSKATN 634
>gi|423345321|ref|ZP_17323010.1| hypothetical protein HMPREF1060_00682 [Parabacteroides merdae
CL03T12C32]
gi|409223107|gb|EKN16044.1| hypothetical protein HMPREF1060_00682 [Parabacteroides merdae
CL03T12C32]
Length = 564
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 234/499 (46%), Gaps = 69/499 (13%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
P+QL+G+ GL+ R + D+MGLGK+L++IA A LV+CP +++++W E
Sbjct: 106 PYQLQGIARGLQLK-RFINGDDMGLGKSLESIATINK-ADAFPCLVICPNVVKINWQRE- 162
Query: 263 ERWLPFCLPADIHLVFGHRNN-PVHL-TRFPRVVVISYTMLHR--LRKSMIEQDWAL--- 315
W F + L R++ P T +V +++Y L + +R+ + W L
Sbjct: 163 --WHKFTDKKAMVLTDSVRDSWPFFWQTGMNQVFIVNYESLRKYFVRRITKAEKWTLKDV 220
Query: 316 -----------LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+I+DESH V+ ++ ++ K +A+ + I+LL+GTP +++P D+
Sbjct: 221 EFHNTIKLFKSVIIDESHKVK----STATQQTKFCKGIASGKEYIILLTGTPVVNKPKDL 276
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
Q+ G++ + D+ +G+ + ++ L+ELN L Q R
Sbjct: 277 VAQL-----GIMDRM--------IDMGGWKGFMLRYCSGPNQASNLKELNYKLWQHCFFR 323
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
R K +L QLP K RQI+ EI + K + D+E+D + K E DD
Sbjct: 324 REKSKVLTQLPDKVRQIV-----SCEITNRKEYM----DAERDLID--YLKRYKEADDEK 372
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
L +GI K R + VI D D N + K+I+F +
Sbjct: 373 IQKSLKGEVMVRIGILKDITARG--KLKEVI---DFVKDFRENGK--KIILFCN------ 419
Query: 545 GVQEFISEKGIGF---VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+ E + I F V + G +++Q++V +FQ + + + I I A G+ ++A
Sbjct: 420 -LHEIVDRLMIAFPSAVCVTGRQNMQEKQASVDAFQKNPKTDVIICSIKAASAGITLTAA 478
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+V F+ELP + + QAE RAHR GQ +VN Y + T D+ ++ + + + +S+A
Sbjct: 479 SDVAFIELPWTYADCDQAESRAHRIGQKDSVNCYYLLGRRTIDQKLYRIIEEK-KHISNA 537
Query: 662 TNGKYDALQEIAVEGVSYL 680
G D +Q V+ ++ L
Sbjct: 538 VLGAEDNIQTNIVDMMANL 556
>gi|195020242|ref|XP_001985154.1| GH16907 [Drosophila grimshawi]
gi|193898636|gb|EDV97502.1| GH16907 [Drosophila grimshawi]
Length = 2013
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/479 (25%), Positives = 222/479 (46%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 731 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 790
Query: 256 LSWAEELERWLP--FCLPA-----------DIHLVF------GHRNNPVHLTRFP-RVVV 295
++W E E W P +C+ + L F G + + + T++ V++
Sbjct: 791 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELTFEEGAIRGTKVSRLRTTQYKFNVLL 850
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ S + +L+ A + +LL+GT
Sbjct: 851 TSYELISMDAPCLGSIDWAVLVVDEAHRLK-----SNQSKFFRILNSYA-IAYKLLLTGT 904
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 905 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 949
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 950 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 1004
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E LS+ + + + +
Sbjct: 1005 GSCSLINIMMDLKKCCNHPYLFPSASEEAPTSAGGIYELLSLTKAAGKLVLLSKMLKQLK 1064
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG+ RQ A+ F + + +
Sbjct: 1065 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTLRQEAIDRFNAPGAQQFVFL 1124
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1125 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1183
>gi|339482074|ref|YP_004693860.1| SNF2-like protein [Nitrosomonas sp. Is79A3]
gi|338804219|gb|AEJ00461.1| SNF2-related protein [Nitrosomonas sp. Is79A3]
Length = 1403
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 229/472 (48%), Gaps = 61/472 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
KLP +L + +Q G + R G CL AD+MGLGKTLQA+A+ G L
Sbjct: 936 KLPSTLQAELRDYQRAGFEWLFRLSAWGVGACL-ADDMGLGKTLQALAVILSRAGEGPTL 994
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGH-RNNPVHLTRFPRVVVISYTMLHR--L 304
VV P + ++W E++R+ P ++ ++ G R + R +++ SY +L +
Sbjct: 995 VVAPTSVCMNWQSEIQRFAPTL---NVQILGGSDRQALIEGLRPMDLLICSYALLQQESA 1051
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLS 359
K + W +++DE+ ++ +KR+ + +A + + ++ +GTP L
Sbjct: 1052 GKILAVPTWQTIVLDEAQLIKNPATKRSQQA--------MALQGRFKIITTGTPVENHLG 1103
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++F IN PGLLG + F + + QD RL+ + Q
Sbjct: 1104 ELWNLFRFIN---PGLLGSLE-SFNRRFAGPIERN-------QDREARQRLKRM----IQ 1148
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAA----VGVINDSEKDATNDKTPK 475
++RR+K +L +LPP+ +++ L E V +A + +N+++ N +
Sbjct: 1149 PFILRRIKTQVLDELPPRTDIELQVELSEQEAVFYEALRRKLLNELNETQGPEENKRFKV 1208
Query: 476 DSDEHDDSGACCRLGKISYQELGIA--KLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
+ ACC + ++ +LG++ KL+ F E +H ++ +K
Sbjct: 1209 LAAITKLRRACCNV-QLVAPDLGLSSSKLALFGE--VLHELL------------DNRHKT 1253
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++F+ + L ++ ++ EKGI + +DG T P +R+ V +FQ + + + +I + AGG
Sbjct: 1254 LVFSQFVDHLSLIRSYLDEKGIAYQYLDGQTPPAERKKRVDAFQ-AGQGDVFLISLKAGG 1312
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
VGL+ ++A V+ ++ +P++ QA DRAHR GQ V +Y K+T +E
Sbjct: 1313 VGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTVYRLVTKNTIEE 1364
>gi|402586937|gb|EJW80873.1| SNF2 family domain-containing protein [Wuchereria bancrofti]
Length = 698
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 154/601 (25%), Positives = 254/601 (42%), Gaps = 74/601 (12%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLS 257
+Q EG+R F G ++AD+MGLGKTLQ + + A I +L+VCP L
Sbjct: 96 YQQEGIRWMSFLEEYGLNGILADDMGLGKTLQTLCLLAMKIHHKPQAKVLIVCPPTLVNH 155
Query: 258 WAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
W E ++ P P H + G+R + + + +V V+SY + R + E +W +
Sbjct: 156 WCAEWSKFFPTLSP--FHKIEEGYREKRLLVDKSQKVTVMSYNTV-RFCTCVQEIEWYYI 212
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE H +R + KA+ ++ A+ + ++LSGTP + P D++ L PG L
Sbjct: 213 ILDEGHMIR----NPTTQLFKALTNIKAQNR--LILSGTPVQNTPIDLWSLFQFLMPGYL 266
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLP 435
G + F T+ + Q+ +G LE L+ + VM RRLK +L LP
Sbjct: 267 GTIR-QFKLTFLNAINGSRNVNASAQEIKEGQDALERLHKSVLPFVM-RRLKTDVLEDLP 324
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND------------------------ 471
K Q + + V + + +++TN+
Sbjct: 325 EKIVQDYMCSMTTVQRFVYNRIVDMYRCARRNSTNNRPSFCALETIAELRKCTVHPSLVS 384
Query: 472 -KTPKDSDEHDDSGACCRLGKIS-----YQELGIAKLSGFREWLSIHPVIAESDGAADID 525
K+ +D D G GKI +E GI G RE H ++E D +
Sbjct: 385 HKSLEDLDLEKLKGCVEESGKIIALRELLKECGI----GSRE----HYALSEESSLQDSE 436
Query: 526 VNPRSN--KMIIFAHHLKVLDGVQEFISEKGIG----FVRIDGNTLPRDRQSAVHSFQLS 579
++ N + +IF L + + S +G F +DG +R + F +
Sbjct: 437 ISETGNGHRALIFCQRLSAVQLLVNLFSSGELGSDIRFAVLDGTVPVNERHAVAEKFNVD 496
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ + I+ GG GL+ + A V+FLE +P LQA DRAHR GQ AVN+Y
Sbjct: 497 PSIHVLILTTNIGGEGLNLTGADVVIFLEHDWNPVKDLQAMDRAHRIGQKCAVNVYRLIT 556
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVA 699
+ + ++ + ++ +LQ +A E + L D G+ +LD +
Sbjct: 557 EGSIEQKIMRLQKFKTDTANALVGADNRSLQTMATEQLMELFAIDDISPGT---SLDAHS 613
Query: 700 SSDQFQELMKVPESSEASDFRAINTNDEITAKMN-DKLLEESKTDHSPTETDDHHNNVSQ 758
S K ES +S F + + +I K++ ++L E S+ D + H VS
Sbjct: 614 SR-------KSRESYTSSTFDKHSRSSDIGEKLSIEELWELSQYDRYNASSIAHSFEVSG 666
Query: 759 Y 759
+
Sbjct: 667 W 667
>gi|83286649|ref|XP_730253.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23489925|gb|EAA21818.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
Length = 1350
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 237/505 (46%), Gaps = 62/505 (12%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAA 238
+D+ D I K P+++ + P+Q+EG+ + R ++ADEMGLGKTLQ I++
Sbjct: 225 ADDDDDTFIIKQPQNISGTMKPYQIEGLNWLYQLYRHKINGILADEMGLGKTLQTISLLC 284
Query: 239 CFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN--NPVHLTRFPR 292
+I +++CP +W EE+++W P + R N L
Sbjct: 285 YLRFNKNIKRKNIIICPRSTLDNWYEEIKKWCSEMKPFKYYGSKEQRKELNKTVLHSDYD 344
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRI 349
V++ +Y ++ + + ++ + DW L++DE+H ++ K+VL + K +
Sbjct: 345 VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKND---------KSVLSSSVRFLKSENR 395
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKA-KYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
+L++GTP + +++ +N L P + + ++D + T Q ++
Sbjct: 396 LLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEI-------- 447
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR------SEIVSAKAAVGVIN 462
+ +L+ +LK M+RRLK + LPPKR I + + + S+I+S + VIN
Sbjct: 448 -ITQLHTILK-PFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN--IDVIN 503
Query: 463 DSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE--WLSIHPVIAESDG 520
A + + CC + G E ++ + +I S
Sbjct: 504 -----AMTGSKNQMLNILMQLRKCCNHPYL---------FDGIEEPPYIEGNHLIETSGK 549
Query: 521 AADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
+ +D + ++++++F+ ++LD + ++ K ++RIDG+T+ +RQ ++
Sbjct: 550 MSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRIDGSTVGDERQIRINK 609
Query: 576 FQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
F N + I ++ AGG+G++ ++A V+ + +P + +QA DRAHR GQ V +
Sbjct: 610 FNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIV 669
Query: 635 YIFCAKDTTDESHWQNLNKSLRCVS 659
Y F +++ +E + K L+ S
Sbjct: 670 YRFVTQNSVEEKIVERAAKKLKLDS 694
>gi|67587278|ref|XP_665245.1| DNA helicase [Cryptosporidium hominis TU502]
gi|54655812|gb|EAL35016.1| DNA helicase [Cryptosporidium hominis]
Length = 405
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 41/309 (13%)
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
H ++ +P L DFA+ Y D + + + + ++F EEL++ ++++VMIRR
Sbjct: 112 HVVSPKFPSYL-----DFAQRYSDTR-INKFSHR--KEFYGSRNTEELHLFIRESVMIRR 163
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK+ +L +LPPK+R I L +K K + +I + D + DE + S +
Sbjct: 164 LKKQVLHELPPKQRSKIPLEIK------DKVGIKMIKELLADPNCQVELSNFDEDESSSS 217
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
C L K++ E+ I + + E+L ++ N K +IF HH +LD
Sbjct: 218 MCNLHKLTC-EIKINPVQEYIEYL--------------LEYN--DEKYVIFGHHHVMLDA 260
Query: 546 VQEFISEK---------GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
++ + +K F+RIDG T R+ V FQ + K+A++ ITA G GL
Sbjct: 261 IESVLLKKRKTACNSGGPFLFIRIDGKTPGNKREEYVKEFQNNENCKVALLSITACGQGL 320
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ +SA V+F EL P MLQAEDR HR G Q S +NI+ A++T D+ W L +
Sbjct: 321 NLTSAGTVIFAELYWVPGTMLQAEDRCHRIGTQYSCINIHYLIAEETLDDKMWGTLCRKQ 380
Query: 656 RCVSSATNG 664
+ ++S +G
Sbjct: 381 KIMASTLDG 389
>gi|351703199|gb|EHB06118.1| Chromodomain-helicase-DNA-binding protein 1-like protein
[Heterocephalus glaber]
Length = 862
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 137/537 (25%), Positives = 245/537 (45%), Gaps = 96/537 (17%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFI-------SAGSILVVC 250
P+QLEGV F R G C++ DEMGLGKT Q IA+ FI G L++C
Sbjct: 19 PYQLEGVNWLVECFHCRNG--CILGDEMGLGKTCQTIAL---FIYLEGRLNDEGPFLILC 73
Query: 251 PAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFP------RVVVISYTMLHR 303
P + +W EE+ER C P + + G + VHL + V++ +Y + R
Sbjct: 74 PLSVLSNWKEEMER----CAPGLSCVTYAGDKEERVHLQQVLTQDSHFHVLLTTYEICLR 129
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ W++L+VDE+H R ++S + + V +LL+GTP + +
Sbjct: 130 DASFLKSFSWSVLVVDEAH--RLKNQSSLLHKTLSEFSVVFS----LLLTGTPIQNSLQE 183
Query: 364 IFHQINMLWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ ++ + P L K + DF + Y D++ ++ G EL+ LL Q +
Sbjct: 184 LYSLLSFVEPDLFSKEQVEDFVQRYQDIE----------KESKSG---NELHRLL-QPFL 229
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR+K + +LP K++E+V + +K KD D ++
Sbjct: 230 LRRVKAEVATELP-----------KKTEVVIYHGMSAL----QKKYYKAILMKDLDAFEN 274
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPV---------------IAESDGAADIDVN 527
A K+ Q + LS R+ + HP + E+ G + ++
Sbjct: 275 EMA----KKVKLQNI----LSQLRKCVD-HPYLFDGVEPEPFEVGDHLIEASGKLHL-LD 324
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+++++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F + + ++
Sbjct: 325 KLGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFVFLL 383
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
AGGVG++ ++A V+F++ +P LQA RAHR GQ V + +DT +E+
Sbjct: 384 STRAGGVGMNLTAADTVIFIDSDFNPQNDLQAAARAHRIGQNKPVRVIRLIGRDTVEETV 443
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG------SEDLTLDQV 698
+ L+ S A G + AL G + L++S+ G SE T+D++
Sbjct: 444 CRRAASKLQLASVAVGGGHCALGARQPLGDADLQLSEILKFGLDKLLSSEGSTMDEI 500
>gi|161528234|ref|YP_001582060.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
gi|160339535|gb|ABX12622.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
Length = 574
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/492 (28%), Positives = 221/492 (44%), Gaps = 53/492 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
+L FQ EG+ F ++ G L+ADEMGLGKT+Q ++ A +LVV P + +W
Sbjct: 114 LLNFQKEGLDFLMKSSGNALLADEMGLGKTVQTLSYVATEKQTFPVLVVAPLVTLNNWER 173
Query: 261 ELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
E+E++L L ++ V R + VI+Y +L + + +
Sbjct: 174 EIEKFLKKKSRNGRLLESESPTVTLIRTGKKKKLPKTDIYVINYELLFKRYDDLAKVGIK 233
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++ DE H++R SK T + + +K + + + RI L SGTP +R +I+ I++L PG
Sbjct: 234 TVVCDEVHNLR-SKTTQKYKSIKKLAALPSVSYRIGL-SGTPIYNRGSEIWPIIDILKPG 291
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
LLG K +F + +C V + + + ++ +R E L++ VM+RR K +L +L
Sbjct: 292 LLGSFK-EFCEYFCYVN--EKGKAIVLENKRASLRNE-----LQKHVMLRRKKSDVLKEL 343
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVIN-DSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
K R E+++A V D ++ + E S + R +
Sbjct: 344 KDKVRY--------KEVIAADTDYYVEELDKIWKRLEEEQKEAESEFSKSASYHRAIQSE 395
Query: 494 YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
Q G+AKL ++ I ES +++F HH + + E + E
Sbjct: 396 RQIAGLAKLPHVINFVKNIMEIEES--------------VVVFCHHKVIHKLLHESLQE- 440
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
V I G RQ + FQ E K+ I GI AG VG++ + A+ V+F EL SP
Sbjct: 441 -FSPVSIIGGQSDTLRQDQIDKFQ-KGESKLMIAGIRAGNVGINLTRAKYVIFAELDWSP 498
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIA 673
++ QAEDR HR GQ + V Y T D+ V++ K + EI
Sbjct: 499 AIHRQAEDRLHRIGQQNTVFAYYLIGNGTLDDH-----------VANVLVDKSYEIDEIM 547
Query: 674 VEGVSYLEMSDK 685
E V E DK
Sbjct: 548 DESVETFENKDK 559
>gi|253700367|ref|YP_003021556.1| SNF2-related protein [Geobacter sp. M21]
gi|251775217|gb|ACT17798.1| SNF2-related protein [Geobacter sp. M21]
Length = 1386
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 132/478 (27%), Positives = 223/478 (46%), Gaps = 73/478 (15%)
Query: 192 KLPKSLLDVILPFQLEG-------VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG 244
+LP +L + +Q EG R+G+ G CL AD+MGLGKT+QA+A G
Sbjct: 921 QLPATLQADLRGYQEEGFNWLNRLARWGV---GACL-ADDMGLGKTVQALAQIISMAEGG 976
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLH 302
LVV P + L+W E ++ P P +VFG +N L +V+ SY +L
Sbjct: 977 PSLVVAPTSVCLNWESETLKFAPTLNP----IVFGGQNRARLLQELKPFDLVICSYGLLQ 1032
Query: 303 RLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---S 357
+ + + W ++++DE+ ++ +KR+ E+ + A +GTP
Sbjct: 1033 QEGELLAAVKWQMIVLDEAQAIKNMATKRSQAAMELNGAFKMVA--------TGTPIENH 1084
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
L +++F IN PGLLG K K ++ QD RL++ L
Sbjct: 1085 LGELWNVFRFIN---PGLLGSLKQFNVKFAAPIEKS--------QDKKARARLKK----L 1129
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
Q ++RR K +L +LPP R+EIV + SE++A+ + + S
Sbjct: 1130 IQPFILRRTKNQVLEELPP-----------RTEIVMK------VEMSEEEASLYEAIRKS 1172
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREW-------LSIHPVIAESDGA-ADIDVNPR 529
+ +G GK +A++ R L P+ + A +I R
Sbjct: 1173 ALDNLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDTPIPSTKLAAFGEIVEELR 1232
Query: 530 SN--KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
N K ++F+ + L+ +++++ + GI + +DG+T P++R+ V +FQ S + +I
Sbjct: 1233 ENRHKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKRRVDAFQ-SGSGDLFLI 1291
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVGL+ ++A V+ ++ +P++ QA DRAHR GQ V IY + T +E
Sbjct: 1292 SLKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVTRGTIEE 1349
>gi|333984366|ref|YP_004513576.1| SNF2-like protein [Methylomonas methanica MC09]
gi|333808407|gb|AEG01077.1| SNF2-related protein [Methylomonas methanica MC09]
Length = 1406
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 239/485 (49%), Gaps = 61/485 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P + + +QL+G R+ R G CL AD+MGLGKT+Q +A+ AG L
Sbjct: 940 QVPSTFQAELRDYQLDGYRWLARLAQWGVGACL-ADDMGLGKTVQGLALLVERAPAGPSL 998
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
+V P + +W E R+ P P + L G R + R V++ SY +L + +
Sbjct: 999 IVAPTSVCANWENEARRFAPTLNP--MVLGGGDRQRLLENLRPFDVLICSYGLLQQEQVA 1056
Query: 306 KSMIEQDWALLIVDESHHVR-CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRP 361
+ + E + ++DE+ ++ + R S+ +++ A+ K ++++GTP L
Sbjct: 1057 ELLAEIPFQTAVLDEAQWIKNIATRRSQ-----GAMNLQAEFK--IIMTGTPLENHLGEL 1109
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++F IN PGLLG + + Q + G + +D + + ++L L+ Q
Sbjct: 1110 WNLFRFIN---PGLLGSME----------QFNQRFAGPIERDRNTQAK-QQLKKLI-QPF 1154
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDS 477
++RR K +L +LPP+ I + L + E V +A ++ ++ S+ + +
Sbjct: 1155 ILRRTKTQVLQELPPRTEIPIYIELSQEEKVFYEALRRDSIAMLGSSDAPPGQKQLQILA 1214
Query: 478 DEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
+CC ++ EL +KL+ F E I E ++ +K ++F
Sbjct: 1215 AITKLRRSCCNTRLVNADLELPSSKLAAFGE-------IVE-------ELLDNKHKALVF 1260
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + L ++ +I ++GI + +DG+T ++RQ V +FQ E ++ +I + AGGVGL
Sbjct: 1261 SQFVDHLQLIKGYIEQRGIAYQYLDGSTPVKERQKRVDAFQ-RGEGELFLISLKAGGVGL 1319
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE------SHWQN 650
+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E SH ++
Sbjct: 1320 NLTAADYVIHMDPWWNPAVEDQASDRAHRMGQQRPVTIYRMIAKNTIEEKIVALHSHKRD 1379
Query: 651 LNKSL 655
L SL
Sbjct: 1380 LADSL 1384
>gi|209696433|ref|YP_002264364.1| helicase [Aliivibrio salmonicida LFI1238]
gi|208010387|emb|CAQ80731.1| putative helicase [Aliivibrio salmonicida LFI1238]
Length = 1284
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 125/479 (26%), Positives = 216/479 (45%), Gaps = 61/479 (12%)
Query: 183 DEVVDEMIGK--LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAI 236
D++V+E K L LL + +Q E V + G CL AD+MGLGKTLQ + +
Sbjct: 814 DKLVEEWRVKPELDAELLAPLRDYQKESVEWAAHLSQHGFGACL-ADDMGLGKTLQGLTL 872
Query: 237 AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
+ + + G +VVCP + +W +E ER+ P + D+ R + VVV+
Sbjct: 873 LSHYRAQGPSMVVCPKSVLTNWQQEAERFTPQLVMIDLE-ACDDRLTAIKAAGPNDVVVL 931
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ RL +++ E +W ++DE+ ++ P+ ++ + + LSGTP
Sbjct: 932 SYGLVTRLAEALNEVEWNCAVLDEAQQIK------NPQAKRSKVVFGLEAAHRFALSGTP 985
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ +++ + L PGLLG D+K+ + Q + +RL+
Sbjct: 986 VENHLVELWSLFSFLNPGLLG-----------DLKSFRSKYSQAAKQQQDMLRLKA---- 1030
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L ++RR K +L +LP K + + L E + +A ++ N K+
Sbjct: 1031 LVSPFIMRRTKTEVLTELPAKTEVVHHVELSNKERTAYEAV------RKESLANLKSASS 1084
Query: 477 SDEHDDSGACCRLGKI---------SYQELGIAKLSGFREWLSIHPVIAES-DGAADIDV 526
+ A +L +I S Q KLS +I E+ DG
Sbjct: 1085 RGVVEVFAALTKLRQICCDVSLVFDSMQGEASTKLS------EAQSLIEEALDG------ 1132
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
+K+++F+ + VL ++E I F +DG + RQ+A+ SF+ + +
Sbjct: 1133 ---DHKVLVFSQFVGVLKRFSAQLTESNISFSYLDGKLSTKQRQAAIDSFK-DGTNSVFL 1188
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I + AGG GL+ + A V+ ++ +P++ QA DRA+R GQ V +Y KDT +E
Sbjct: 1189 ISLKAGGTGLNLTEADTVIHIDPWWNPAVEDQASDRAYRMGQQKPVTVYRLVTKDTIEE 1247
>gi|302673648|ref|XP_003026510.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
gi|300100193|gb|EFI91607.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
Length = 1361
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/513 (24%), Positives = 231/513 (45%), Gaps = 89/513 (17%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAAC 239
+ E I K P L+ L +QL+G++ + R G ++ADEMGLGKT+Q I++
Sbjct: 469 IPEKITKQPSLLVGGTLKEYQLKGLQWMVSLYNNRLNG--ILADEMGLGKTIQTISLITF 526
Query: 240 FISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---- 291
I G LV+ P +WA E +W P V ++ NP
Sbjct: 527 LIEVKRQRGPYLVIVPLSTMTNWAGEFAKWAPAVK------VISYKGNPAQRRALQGELR 580
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
+V++ +Y + + R + + W +I+DE H ++ ++ ++ L +
Sbjct: 581 NSNFQVLLTTYEYIIKDRPHLSKLRWVHMIIDEGHRMKNTQ-----SKLSQTLTTYYRSN 635
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
++L+GTP + +++ +N + P K + VK+ + F + G
Sbjct: 636 YRLILTGTPLQNNLPELWSLLNFVLP-----------KVFNSVKSFDEWFNTPFANAGTG 684
Query: 408 --VRLEELNVLL--------KQTVMIRRLKQHLLVQLPPKRRQIIRL-----------LL 446
+ L E LL + ++RRLK+ + +LP K+ ++I++ +
Sbjct: 685 DKIELNEEEALLIIRRLHKVLRPFLLRRLKKDVESELPDKQEKVIKVRMSALQSQLYKQM 744
Query: 447 KRSEIVSAKAAVGVINDSEKDATND--------KTPKDSDEHDDSGACCRLGKISYQELG 498
K+ ++++ G K +N+ + P DE +D +L +
Sbjct: 745 KKYKMIANGKGKGQSTGGVKGLSNELMQLRKICQHPFLFDEVEDVVNTTQL-----IDEK 799
Query: 499 IAKLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
I + SG E LS I P + +D ++++IF KV+D +++F+ G +
Sbjct: 800 IIRSSGKVELLSRILPKLFATD-----------HRVLIFFQMTKVMDIMEDFLKMMGWKY 848
Query: 558 VRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
+R+DG T +R S V F + ++++ I+ AGG+GL+ +A V+ + +P
Sbjct: 849 LRLDGGTKTEERASYVQLFNAKDSDIRVFILSTRAGGLGLNLQTADTVIIFDSDWNPHAD 908
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
LQA+DRAHR GQT AV I F + + +E+ +Q
Sbjct: 909 LQAQDRAHRIGQTKAVLILRFITEKSVEEAMYQ 941
>gi|170587941|ref|XP_001898732.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
gi|158592945|gb|EDP31540.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
Length = 798
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 149/593 (25%), Positives = 253/593 (42%), Gaps = 58/593 (9%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLS 257
+Q EG+R F G ++AD+MGLGKTLQ + + A I +L+VCP L
Sbjct: 196 YQQEGIRWMSFLEEYGLNGILADDMGLGKTLQTLCLLAMKIYHKPQAKVLIVCPPTLVNH 255
Query: 258 WAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
W E ++ P P H + G+R + + + +V V+SY + R + E +W +
Sbjct: 256 WCAEWSKFFPTLSP--FHKIEEGYREKRLLMDKSQKVTVMSYNTV-RFCTCVQEIEWYYI 312
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE H +R + KA+ ++ A+ + ++LSGTP + P D++ L PG L
Sbjct: 313 ILDEGHMIR----NPTTQLFKALTNIKAQNR--LILSGTPVQNTPVDLWSLFQFLMPGYL 366
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLP 435
G + F T+ + Q+ +G LE L+ + VM RRLK +L LP
Sbjct: 367 GTIR-QFKLTFLNAINGSRNVNASAQEIKEGQDALERLHKSVLPFVM-RRLKTDVLEDLP 424
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI--- 492
K Q + + V + + +++TN++ + E C +
Sbjct: 425 EKIVQDYMCSMTTVQRFLYNRIVDMYQSARRNSTNNRPSFCALETIAELRKCTVHPFLVS 484
Query: 493 --SYQELGIAKLSG----------FREWLSI-------HPVIAESDGAADIDVNPRSN-- 531
S ++L + KL G RE L H ++E D +++ N
Sbjct: 485 HKSLEDLDLEKLKGCVEESGKIIALRELLKECGIGSREHYALSEESSLQDSEISQTGNGH 544
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIG----FVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+ +IF L + + S +G F +DG +R + F + + + I+
Sbjct: 545 RALIFCQRLSAVQLLVNLFSSGELGSDIRFAVLDGTVPVNERHAVAEKFNVDPSIHVLIL 604
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
GG GL+ + A V+FLE +P LQA DRAHR GQ AVN+Y + + ++
Sbjct: 605 TTNIGGEGLNLTGADIVIFLEHDWNPVKDLQAMDRAHRIGQKCAVNVYRLITEGSIEQKI 664
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL 707
+ ++ +LQ +A E + L D G+ +LD +
Sbjct: 665 MRLQKFKTDTANALVGADNRSLQTMATEQLMELFAIDDVSPGT---SLDAYSPR------ 715
Query: 708 MKVPESSEASDFRAINTNDEITAKMN-DKLLEESKTDHSPTETDDHHNNVSQY 759
K E+ +S F + + +I K++ ++L E S+ D + H VS +
Sbjct: 716 -KSRENDTSSTFDKHSRSSDIGEKLSIEELWELSQYDRYNASSIAHSFEVSGW 767
>gi|124803472|ref|XP_001347729.1| PfSNF2L [Plasmodium falciparum 3D7]
gi|23495979|gb|AAN35642.1|AE014836_39 PfSNF2L [Plasmodium falciparum 3D7]
Length = 1426
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/511 (23%), Positives = 241/511 (47%), Gaps = 74/511 (14%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLRRGG-RCLIADEMGLGKTLQAIAIAA 238
++E + +I K P ++ + P+QLEG+ + L R ++ADEMGLGKTLQ I++
Sbjct: 303 ANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISL-L 361
Query: 239 CFI-----SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---- 289
C++ +++CP +W EE+++W C P +G+++ L R
Sbjct: 362 CYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW---CTPMKAFKYYGNKDQRKELNRNLLH 418
Query: 290 --FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
F V++ +Y ++ + + ++ + DW L++DE+H ++ K+VL + +
Sbjct: 419 SDFD-VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNE---------KSVLSSSVRFL 468
Query: 348 RI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKA-KYDFAKTYCDVKTVQGYQGQLFQD 403
R +L++GTP + +++ +N L P + + ++D + T Q ++
Sbjct: 469 RSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEI--- 525
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR------SEIVSAKAA 457
+ +L+ +LK M+RRLK + LPPKR I + + + S+I+S
Sbjct: 526 ------ITQLHTILK-PFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNID 578
Query: 458 V-GVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE--WLSIHPV 514
V + S+ N CC + G E ++ + +
Sbjct: 579 VLNAMTGSKNQMLNILMQ--------LRKCCNHPYL---------FDGIEEPPYIEGNHL 621
Query: 515 IAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
I S + +D + ++++++F+ ++LD + ++ K ++RIDG+T +R
Sbjct: 622 IETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 681
Query: 570 QSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
Q ++ F N + I ++ AGG+G++ ++A V+ + +P + +QA DRAHR GQ
Sbjct: 682 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQ 741
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
V +Y F +++ +E + K L+ S
Sbjct: 742 KKRVIVYRFVTQNSVEEKIVERAAKKLKLDS 772
>gi|145479813|ref|XP_001425929.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393001|emb|CAK58531.1| unnamed protein product [Paramecium tetraurelia]
Length = 1299
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 125/471 (26%), Positives = 223/471 (47%), Gaps = 55/471 (11%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC----FISAGSILVVCPAILRL 256
FQL+G+++ ++ADEMGLGKT+Q I+ + +G L++ PA +
Sbjct: 410 FQLQGLQWLQKSYETNNNVILADEMGLGKTIQTISFLNFLQYEYKKSGPFLIIGPATILY 469
Query: 257 SWAEELERWL-PFCLPA--------DIHLV--FGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+W +EL++W F + DI F + NN + +F V++ SY + +
Sbjct: 470 NWLKELKKWAETFNVIVYTGNQESRDIIKAKEFYYNNN---ICKF-NVLITSYDIAIIDQ 525
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + +W LIVDE+H ++ ++ + K +++ I+LL+GTP + ++
Sbjct: 526 AIIKKINWECLIVDEAHRLK----NNDSKFFKVCSQFSSQ--HIILLTGTPLQNNLQELI 579
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ I + P + + K + + + ++ +Q K L ELN LLK ++ RR
Sbjct: 580 NLIEFIAPQKVKQLKKEQLNVLFNNQDLEDFQE------VKKSTLTELNSLLKPHIL-RR 632
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K + +Q+P II+L L + K + N + K D+ +
Sbjct: 633 TKADVKLQVPEMEEIIIKLCLTDKQKFLYKNVM---------LRNYEKLKVLDQKKGASK 683
Query: 486 CCRLGKISYQELGIAKLSGF---REWLS--IHPVIAESDGAADID-VNPR----SNKMII 535
L + L F RE+ + I +I +S+ +D + PR +KM+I
Sbjct: 684 ANLLNILMSLRLVCNHPYLFTYKREFPNEDIEEMINQSNKLKFVDRIIPRLLEMQHKMLI 743
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGV 594
F+ +LD +Q ++ +G + R+DG T DRQ + SF S + KI ++ AGG+
Sbjct: 744 FSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRIIDSFNNSTGKSKIFLLSTRAGGL 803
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G++ +SA ++F + +P LQA RAHR GQT+ V ++ +K T +E
Sbjct: 804 GINLTSADTIIFTDSDFNPYRDLQAISRAHRMGQTNKVKVFRLVSKYTAEE 854
>gi|345869942|ref|ZP_08821897.1| SNF2-related protein [Thiorhodococcus drewsii AZ1]
gi|343922329|gb|EGV33031.1| SNF2-related protein [Thiorhodococcus drewsii AZ1]
Length = 1380
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 218/467 (46%), Gaps = 55/467 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
LP +L + +Q+EG R+ R G CL AD+MGLGKTLQA+A+ + G LV
Sbjct: 915 LPSTLQAELRDYQVEGFRWLARLAHWGAGACL-ADDMGLGKTLQALALVLSRATEGPTLV 973
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ P + +W E R+ P P G R + ++V SY ++ + +
Sbjct: 974 LAPMSVCSNWISEAHRFAPTLNPK--RFGDGDREQMLESAGPFDLIVCSYGLVQTEGERL 1031
Query: 309 IEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
WA ++ DE+ + +KR+ +A++ + A + I +GTP L ++
Sbjct: 1032 AGLRWATIVADEAQVFKNAMTKRS------QAIMKLEAGFRLIT--TGTPIENHLGELWN 1083
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+F IN PGLLG + F + + ++ +Q G R + L LL+ ++
Sbjct: 1084 LFRFIN---PGLLGSLET-FNRRFA--TPIEQHQ-------DSGAR-QRLRQLLRPFIL- 1128
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDE 479
RRLK +L +LPP+ I L L ++E +A A+ + E + + ++
Sbjct: 1129 RRLKSEVLTELPPRTEIAIELELGQAEAALYEAVRREAIERLETEEANPGQKRMQLLAEI 1188
Query: 480 HDDSGACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
CC + EL AKL F E L D+ +K ++F+
Sbjct: 1189 MRLRRVCCHPKLVLPDSELSSAKLDAFGEILD--------------DLLDNRHKALVFSQ 1234
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L ++ ++ +GI + +DG+T R++AV +FQ + E + +I + AGG GL+
Sbjct: 1235 FVDHLSIIRAYLDARGISYQYLDGSTPENKRKAAVAAFQ-AGEGDLFLISLRAGGSGLNL 1293
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ ++ +P++ QA DRAHR GQ V IY K T +E
Sbjct: 1294 TAADYVIHMDPWWNPAVEDQASDRAHRIGQERPVTIYRLVTKGTIEE 1340
>gi|409201852|ref|ZP_11230055.1| SNF2-like protein [Pseudoalteromonas flavipulchra JG1]
Length = 1401
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 228/472 (48%), Gaps = 54/472 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
LP +L + +Q G + +R G CL AD+MGLGKT+QA+A+ + G LV
Sbjct: 926 LPSTLQAELRDYQQAGFDWAMRLAHWGAGACL-ADDMGLGKTIQALAMILARANVGPTLV 984
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR---VVVISYTMLHRLR 305
+ P + +W +E++++ P L + + H + + + V++SY +L R
Sbjct: 985 IAPTSVCFNWQQEIQKFAP-TLSVKLFSDYPHSDARAEMLSNLQPLDCVILSYGLLQREV 1043
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + ++ DE+ ++ +KRT +A + K K I +GTP +L+
Sbjct: 1044 DILKPIAFETIVADEAQALKNPLAKRT------QAACALKGKFKLIT--TGTPIENNLTE 1095
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F +N PGLLG K K ++ +D R + L Q
Sbjct: 1096 LWSLFRFVN---PGLLGNLKRFSEKFSAPIENAN-------EDKLAAHRARKGLKHLIQP 1145
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS-EKDATNDKTPK 475
++RR+K +L +LPP+ + + L + E +A A+ I+ S ++D+ N++ K
Sbjct: 1146 FILRRMKHQVLTELPPRTEINVPIQLSQEEQTFYEALRQNAIDEISQSTQQDSANEQRFK 1205
Query: 476 D-SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
+ ACC + + ++ +KL+ E L+ ++ ++K
Sbjct: 1206 MLAALTRLRQACCHPKLLMAESQITSSKLAALDELLT--------------ELQENNHKA 1251
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+IF+ + L ++ + ++GI F +DG+T + RQ AV++FQ E ++ +I + AGG
Sbjct: 1252 LIFSQFVGHLQLIKARLEKRGIRFQYLDGSTPSKARQQAVNAFQ-KGEGEVFLISLKAGG 1310
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ ++ +P++ QA DRAHR GQT V IY AK T +E
Sbjct: 1311 SGLNLTAADYVIHMDPWWNPAVEEQASDRAHRMGQTRPVTIYRLIAKGTIEE 1362
>gi|163798351|ref|ZP_02192275.1| swf/snf family helicase [alpha proteobacterium BAL199]
gi|159176371|gb|EDP60962.1| swf/snf family helicase [alpha proteobacterium BAL199]
Length = 1048
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 222/467 (47%), Gaps = 54/467 (11%)
Query: 192 KLPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP++L + +Q+EG R G CL AD+MGLGKT+QAIA+ G L
Sbjct: 586 RLPETLQAELRDYQIEGFVWMSRLARWGAGACL-ADDMGLGKTVQAIAVLLDQAEEGPCL 644
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P + +W E+ R+ P H + G R V+ V++ SYT+LH +
Sbjct: 645 VVAPTSVCPNWHAEIARFAPTL---RTHALAGDRAALVNGLSSRDVLICSYTLLHLAAEE 701
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS---LSRPYDI 364
+ + W ++++DE+ ++ +E +A + A + + L+GTP L + +
Sbjct: 702 LGTRPWRMVVLDEAQAIK----NAETRRAQATSSLQADFR--LALTGTPVENYLDELWSL 755
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F +N PG LG ++ F K + + ++ +D R + L L++ M+R
Sbjct: 756 FAFVN---PGFLG-SREGFQKRFA--RPIE-------RDRDPAAR-QALRALIR-PFMLR 800
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEH 480
R K +L +LPP+ Q +R+ ++ E +A ++ + + A K ++
Sbjct: 801 RTKAMVLHELPPRTEQTMRIEMEDGERAFYEALRRQSLDRLAAVDAPAGQRKIQILAEIT 860
Query: 481 DDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
ACC I Q+ G+ KL+ F + + D+ ++ ++F+
Sbjct: 861 RLRRACCNPALID-QDAGVPSGKLAAFLDLVD--------------DLVRNRHRALVFSQ 905
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L V+ + +GI + +DG+T DR+ V +FQ + + +I + AGG GL+
Sbjct: 906 FVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQ-AGTADVFLISLRAGGTGLNL 964
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A VV L+ +P++ QA DRAHR GQ V IY +D+ +E
Sbjct: 965 TAADYVVHLDPWWNPAVEDQASDRAHRIGQERPVTIYRLIMQDSIEE 1011
>gi|2213862|gb|AAC47719.1| PfSNF2L [Plasmodium falciparum]
Length = 1422
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/511 (23%), Positives = 241/511 (47%), Gaps = 74/511 (14%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVR--FGLRRGG-RCLIADEMGLGKTLQAIAIAA 238
++E + +I K P ++ + P+QLEG+ + L R ++ADEMGLGKTLQ I++
Sbjct: 300 ANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISL-L 358
Query: 239 CFI-----SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---- 289
C++ +++CP +W EE+++W C P +G+++ L R
Sbjct: 359 CYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW---CTPMKAFKYYGNKDQRKELNRNLLH 415
Query: 290 --FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
F V++ +Y ++ + + ++ + DW L++DE+H ++ K+VL + +
Sbjct: 416 SDFD-VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNE---------KSVLSSSVRFL 465
Query: 348 RI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKA-KYDFAKTYCDVKTVQGYQGQLFQD 403
R +L++GTP + +++ +N L P + + ++D + T Q ++
Sbjct: 466 RSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQSEI--- 522
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR------SEIVSAKAA 457
+ +L+ +LK M+RRLK + LPPKR I + + + S+I+S
Sbjct: 523 ------ITQLHTILK-PFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNID 575
Query: 458 V-GVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE--WLSIHPV 514
V + S+ N CC + G E ++ + +
Sbjct: 576 VLNAMTGSKNQMLNILMQ--------LRKCCNHPYL---------FDGIEEPPYIEGNHL 618
Query: 515 IAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
I S + +D + ++++++F+ ++LD + ++ K ++RIDG+T +R
Sbjct: 619 IETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDER 678
Query: 570 QSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
Q ++ F N + I ++ AGG+G++ ++A V+ + +P + +QA DRAHR GQ
Sbjct: 679 QVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQ 738
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
V +Y F +++ +E + K L+ S
Sbjct: 739 KKRVIVYRFVTQNSVEEKIVERAAKKLKLDS 769
>gi|195428619|ref|XP_002062369.1| GK17504 [Drosophila willistoni]
gi|194158454|gb|EDW73355.1| GK17504 [Drosophila willistoni]
Length = 2023
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 222/479 (46%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 743 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 802
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 803 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGTKVSRLRTTQYKFNVLL 862
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K+ LL+GT
Sbjct: 863 TSYELISMDAPCLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYKL----LLTGT 916
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 917 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 961
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 962 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 1016
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E + G E S+ + + + +
Sbjct: 1017 GSCSLINIMMDLKKCCNHPYLFPSAAEEALTSAGGLYEINSLTKAAGKLVLLSKMLKQLK 1076
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG+ RQ A+ F + + +
Sbjct: 1077 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGAVRQEAIDRFNAPGAQQFVFL 1136
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1137 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1195
>gi|384246282|gb|EIE19773.1| hypothetical protein COCSUDRAFT_31120 [Coccomyxa subellipsoidea
C-169]
Length = 697
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 140/588 (23%), Positives = 256/588 (43%), Gaps = 96/588 (16%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGG----RCLIADEMGLGKTLQAIAIA 237
S + V E + P+ ++ + +Q+EG+R+ + R G ++ADEMGLGKTLQ IA
Sbjct: 121 SKDAVPEAVEAQPECVVGTMREYQVEGLRWLVSRVGDSGVNSILADEMGLGKTLQTIAFL 180
Query: 238 ACFIS----AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR- 292
A + AG LVV P + SW +E RW P + +V H ++P R R
Sbjct: 181 AYMQTVRRVAGPSLVVVPMSVLSSWTKEFARWAPH-----LRVVRVHTSSPEDKLRIRRE 235
Query: 293 ---------VVVISYTML------HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
V V +Y M+ + L +++ W L++DE H ++ ++ T + ++
Sbjct: 236 VLANPSSFDVAVTTYDMMSSKDLGNSLSRTIA---WRYLVLDEGHKIK-NELTQVAQRMR 291
Query: 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA-----KYDFAKTYCDVKT 392
V + IVLL+GTP + ++++ +N + P + + +D K D
Sbjct: 292 HV-----SCQNIVLLTGTPLQNNLHELYALLNFMHPDIFTTSDPFDQAFDLTKNRVDNDA 346
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII---------- 442
++ L Q + +RRLK+ + LP + I
Sbjct: 347 LEAAHR------------------LIQPICLRRLKEDVEKSLPARVETRIHCPLSSMQTF 388
Query: 443 ---RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR---LGKISYQE 496
RLLLK S ++ + +++DA ND K CC L + +
Sbjct: 389 WYRRLLLKDSAMLKSLET----EVTKEDAGNDAWKKLQALFMQLRKCCNHPYLFPGAEPD 444
Query: 497 LGIAKL----SGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQ 547
++ S +W ++ S A +D ++ R +++ +F+ +LD ++
Sbjct: 445 FDGSQTGEHPSSRNKW---EDIVEASGKMAVLDRMLAMLHARGHRVTLFSQFNIMLDIIE 501
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVF 606
+++ +G +VR+DG+T R ++ F + + + I I+ AGG+G++ SA +
Sbjct: 502 DYMIMRGYKYVRLDGSTSRVQRMIDINRFNIPGSNLFIYILNTKAGGLGVNLQSADTCIL 561
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
+ +P LQA R HR GQT ++Y FC T ++ Q K L +G
Sbjct: 562 FDSDWNPQWDLQAMARVHRIGQTRTCHVYRFCTSGTIEQRVQQRAEKKLFLDQMVNSGHT 621
Query: 667 DALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESS 714
++++E+ E +S EM G++ + + + +EL + + S
Sbjct: 622 ESVEEL--EKLSKGEMLSMLKFGADRIFASEEGQAPTDKELAAIIDRS 667
>gi|429767518|ref|ZP_19299715.1| protein, SNF2 family [Clostridium celatum DSM 1785]
gi|429180928|gb|EKY22129.1| protein, SNF2 family [Clostridium celatum DSM 1785]
Length = 1083
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 132/513 (25%), Positives = 230/513 (44%), Gaps = 83/513 (16%)
Query: 180 HLSDEV--VDEMIGKLPKSLLDVILPFQLEGVRFG-----LRRGGRCLIADEMGLGKTLQ 232
H+++++ +D + +PK L + +QL G ++ GG ++ADEMGLGKT+Q
Sbjct: 609 HIANKIENLDSIDYDIPKDLNANLRDYQLTGFKWFKTLSYYEFGG--ILADEMGLGKTIQ 666
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN----NPVHLT 288
IA SI +V P L +W E E++ P DI ++ G++ P
Sbjct: 667 TIAFLLSEKGKRSI-IVTPTSLIYNWKSEFEKFAP---DLDIKIIHGNKEERAFTPEEAK 722
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
++ V++ +Y L + I+DE +++ S+ EV V ++ AKVK
Sbjct: 723 KYD-VLLTTYGTLRNDYDLYENITFDYCIIDEGQNIKNP--LSQSSEV--VKEIKAKVK- 776
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD--FSK 406
L+GTP + +++ + + PG L Y + FQD +
Sbjct: 777 -FALTGTPIENNLLELWSLFDYIMPGYL-------------------YSRRKFQDKFMKR 816
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRLLLKRSEIVSAKAAVGVINDS 464
E+L L+K ++ RRLK ++ +LP K +R +I + ++ ++ + +
Sbjct: 817 DKNTEDLKRLIKPFIL-RRLKTEVMSELPDKIEKRFLIEMTDEQKKVYKSYIDDIKVKMK 875
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI---AESDGA 521
EKD T DK + SY L+ R+ L++ P I G+
Sbjct: 876 EKDFTKDK----------------ITIFSY-------LTKLRQ-LTLDPSILVEGYKGGS 911
Query: 522 ADIDVN--------PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
IDV +K+++F+ VLD +++ + +GI + +DG T R V
Sbjct: 912 GKIDVTVELIQEFIKNDHKILLFSQFTSVLDNLKKILETEGIEYFYLDGQTKASQRVELV 971
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+ F SN+ K+ +I + AGG GL+ +SA V+ + +P++ QA DRAHR GQ + V
Sbjct: 972 NEFNNSNKTKVFLISLKAGGTGLNLTSADVVIHFDPWWNPAIEDQATDRAHRFGQKNVVE 1031
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
+ AK + +E + ++ NG Y
Sbjct: 1032 VIKLIAKGSIEEKIIKLQESKKEIINEVMNGNY 1064
>gi|392542695|ref|ZP_10289832.1| SNF2-like protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1401
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 129/485 (26%), Positives = 231/485 (47%), Gaps = 57/485 (11%)
Query: 183 DEVVDEMIG---KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIA 235
+E + + +G LP +L + +Q G + +R G CL AD+MGLGKT+QA+A
Sbjct: 913 NEKMQQAVGLTPTLPSTLQAELRDYQQAGFDWAMRLAHWGAGACL-ADDMGLGKTIQALA 971
Query: 236 IAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--- 292
+ + G LV+ P + +W +E++++ P L + + H + + +
Sbjct: 972 MILARANVGPTLVIAPTSVCFNWQQEIQKFAP-TLSVKLFSDYPHSDARAEMLSNLQPLD 1030
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIV 350
V++SY +L R + + ++ DE+ ++ +KRT +A + K K I
Sbjct: 1031 CVILSYGLLQREVDILKPIAFETIVADEAQALKNPLAKRT------QAACALKGKFKLIT 1084
Query: 351 LLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
+GTP +L+ + +F +N PGLLG K K ++ +D
Sbjct: 1085 --TGTPIENNLTELWSLFRFVN---PGLLGNLKRFSEKFSAPIENAN-------EDKLAA 1132
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVIND 463
R + L Q ++RR+K +L +LPP+ + + L + E +A A+ I+
Sbjct: 1133 HRARKGLKHLIQPFILRRMKHQVLTELPPRTEINVPIQLSQEEQTFYEALRQNAIDEISQ 1192
Query: 464 S-EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDG 520
S ++D+ N++ K C K+ E I +KL+ E L+
Sbjct: 1193 STQQDSANEQRFKMLAALTRLRQACCHPKLLMAESQITSSKLAALDELLT---------- 1242
Query: 521 AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
++ ++K +IF+ + L ++ + ++GI F +DG+T + RQ AV++FQ
Sbjct: 1243 ----ELQENNHKALIFSQFVGHLQLIKARLEKRGIRFQYLDGSTPSKARQQAVNAFQ-KG 1297
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
E ++ +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQT V IY AK
Sbjct: 1298 EGEVFLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRMGQTRPVTIYRLIAK 1357
Query: 641 DTTDE 645
T +E
Sbjct: 1358 GTIEE 1362
>gi|449329940|gb|AGE96207.1| rad26-like DNA repair and recombination protein [Encephalitozoon
cuniculi]
Length = 695
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 128/513 (24%), Positives = 225/513 (43%), Gaps = 110/513 (21%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR-----RGGRCLIADEMGLGKTLQAIAIAACFISAGSI- 246
+P L + P+Q +GVR+ LR +GG ++AD+MGLGKT+Q I + + +
Sbjct: 143 VPGFLWSSLFPYQQDGVRWMLRLYRDEKGG--VLADDMGLGKTIQVIVFLGALLHSRVVS 200
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L++CPA + W +E +R+ PF + + FG N V ++SY
Sbjct: 201 KALILCPATIVSQWMDEWKRFYPF-----VRIFFGFPNEDCE-----GVYLMSYEKFKAG 250
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRP 361
K+ + W +LI+DE H ++ +K VK A+ + +LSGTP +L
Sbjct: 251 VKNFL---WDVLILDEGHRIK-NKNAQITLSVK-----KARSRGRFVLSGTPIQNNLGEL 301
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+ IF +N PGLLG + F + + +V GY+ K R + L +
Sbjct: 302 WSIFDFVN---PGLLG-SHTSFNEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPY 357
Query: 422 MIRRLKQHLLVQLPPKR----------------------RQIIRLLLKRSEIVSAKAA-- 457
++RR K + +LP K + I+++L ++ ++S +
Sbjct: 358 ILRRTKSQVSHKLPSKEDKIVFCSLTPAQIELYNRVLESKHIMKVLTGKANLLSGISMLR 417
Query: 458 -------------VGVINDSEKDATNDKTPKDSD--------EHDDSGACCRLGKISYQE 496
+GV D E++A+++K +D +D + C++ KI
Sbjct: 418 KVCNHPRLLFPRKLGVSEDCEEEASDEKNGEDEALELPGADVSYDLVSSSCKI-KILVDL 476
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
L ++W S NK+++F+ +++LD ++ + +
Sbjct: 477 L--------KKWRS------------------EGNKVLVFSQTIRMLDIIERCV--RKYT 508
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
++R+DG T R V F +V + ++ GG+GL+ + A +V + +PS
Sbjct: 509 YLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIVIYDPDWNPSTD 568
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
QA++RA R GQ V IY F KDT +E +Q
Sbjct: 569 TQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQ 601
>gi|392512974|emb|CAD27013.2| RAD26-LIKE DNA REPAIR AND RECOMBINATION PROTEIN [Encephalitozoon
cuniculi GB-M1]
Length = 687
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/513 (24%), Positives = 224/513 (43%), Gaps = 110/513 (21%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR-----RGGRCLIADEMGLGKTLQAIAIAACFISAGSI- 246
+P L + P+Q +GVR+ LR +GG ++AD+MGLGKT+Q I + + +
Sbjct: 135 VPGFLWSSLFPYQQDGVRWMLRLYRDEKGG--VLADDMGLGKTIQVIVFLGALLHSRVVS 192
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L++CPA + W +E +R+ PF + + FG N V ++SY
Sbjct: 193 KALILCPATIVSQWMDEWKRFYPF-----VRIFFGFPNEDCE-----GVYLMSYEKFKAG 242
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRP 361
K+ + W +LI+DE H ++ +K VK A+ + +LSGTP +L
Sbjct: 243 VKNFL---WDVLILDEGHRIK-NKNAQITLSVK-----KARSRGRFVLSGTPIQNNLGEL 293
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+ IF +N PGLLG + F + + +V GY+ K R + L +
Sbjct: 294 WSIFDFVN---PGLLG-SHTSFNEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPY 349
Query: 422 MIRRLKQHLLVQLPPKR----------------------RQIIRLLLKRSEIVSAKAA-- 457
++RR K + +LP K + I+++L ++ ++S +
Sbjct: 350 ILRRTKSQVSHKLPSKEDKIVFCSLTPAQIELYNRVLESKHIMKVLTGKANLLSGISMLR 409
Query: 458 -------------VGVINDSEKDATNDKTPKDSD--------EHDDSGACCRLGKISYQE 496
+GV D E++A+++K +D +D + C++ +
Sbjct: 410 KVCNHPRLLFPRKLGVSEDCEEEASDEKNGEDEALELPGADVSYDLVSSSCKIKIL---- 465
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
+ ++W S NK+++F+ +++LD ++ + +
Sbjct: 466 -----VDLLKKWRS------------------EGNKVLVFSQTIRMLDIIERCV--RKYT 500
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
++R+DG T R V F +V + ++ GG+GL+ + A +V + +PS
Sbjct: 501 YLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIVIYDPDWNPSTD 560
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
QA++RA R GQ V IY F KDT +E +Q
Sbjct: 561 TQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQ 593
>gi|416374343|ref|ZP_11683169.1| SWI/SNF family helicase, partial [Crocosphaera watsonii WH 0003]
gi|357266728|gb|EHJ15317.1| SWI/SNF family helicase, partial [Crocosphaera watsonii WH 0003]
Length = 1076
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 226/478 (47%), Gaps = 73/478 (15%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP + + +QLEG + R G CL AD+MGLGKT+QA+A SAG L
Sbjct: 612 QLPSTFQGDLRDYQLEGFHWLARLSHWGVGACL-ADDMGLGKTIQALAAILTRASAGPTL 670
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHR-- 303
+V P + +W +E ++ P P L+FG N L +++ SY +L +
Sbjct: 671 IVAPTSVCFNWIDECFKFAPTLNP----LLFGSGNRQEILDNLQPFDLLICSYGLLQQES 726
Query: 304 LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SL 358
+ + E W +++DE+ ++ +KR+ +A + + + K I +GTP L
Sbjct: 727 VAAMLAEVSWQTIVLDEAQFIKNMTTKRS------QAAMKLQGQFKLIT--TGTPLENHL 778
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+++F IN PGLLG K F + + + ++ Q ++ ++L L+
Sbjct: 779 GELWNLFRFIN---PGLLGSWK-QFNERF--ITPIESDQHKVLH--------QKLKRLI- 823
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
Q ++RR K +L +LPP+ ++ + L E+ +A +D+ T D
Sbjct: 824 QPFILRRTKTQVLSELPPRTETVLSVELSNEEMALYEAL-------RRDSLEQLTASD-- 874
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD-----------IDVN 527
DSG G+ Q L A L R HP + +D + + ++
Sbjct: 875 ---DSG-----GQKHLQVL--AALMKLRR-CCCHPTLILNDSSLNGSKLQLFQEILEELL 923
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ + L V+ + + I + +DG+T ++RQ V +FQ S + + +I
Sbjct: 924 DNRHKALVFSQFVDHLQIVKAHLDQHNISYQYLDGSTPKKERQRRVKAFQ-SGDGDVFLI 982
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ ++A V+ L+ +P++ QA DRA+R GQ V +Y AKDT +E
Sbjct: 983 SLKAGGTGLNLTAADYVIHLDPWWNPAVEDQATDRAYRIGQQRPVTVYRLVAKDTIEE 1040
>gi|330841728|ref|XP_003292844.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
gi|325076886|gb|EGC30638.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
Length = 931
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 148/271 (54%), Gaps = 26/271 (9%)
Query: 403 DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG-VI 461
D++ L+EL+VLL+ +MIRRLK +L LPPK R I++++ ++ +G V
Sbjct: 2 DYTGNGHLQELHVLLR-GIMIRRLKVDVLHDLPPKHR--IKVVVDTP--TQMQSTLGNVF 56
Query: 462 NDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
+ S K + + ++ DE + G L Y+E G AKL E++S +I E +
Sbjct: 57 SKSNKISMFQQFKQNQDESNGLVKGQIMEL----YRETGKAKLKSSCEYIS--KLIKEKE 110
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
K +IFAHH ++DG++ I + G++RIDG+T RQ+ V+ FQ +
Sbjct: 111 ------------KFLIFAHHSDIMDGLESAIQKSKAGYIRIDGSTPAVLRQTYVNKFQTN 158
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ ++A++ ITA G GL +++ VVF+EL +P ++ QAEDR HR GQT V I+
Sbjct: 159 SSCQVALLSITAAGTGLTLTASNLVVFVELYWTPGVLRQAEDRVHRIGQTKDVYIHYLIG 218
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
K+T D+ W + L + +G+ + L+
Sbjct: 219 KNTLDDRIWPIICNKLEVLGETLDGQEEILR 249
>gi|149200413|ref|ZP_01877429.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
gi|149136482|gb|EDM24919.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
Length = 1041
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 212/438 (48%), Gaps = 40/438 (9%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILRLSWAEELERWLPFCLPA 272
G CL AD+MGLGKT+Q ++ + G ++L+V P L +W +E++R+ P L
Sbjct: 607 GACL-ADDMGLGKTVQVLSFLHMLLKQGELDKAVLIVAPRSLLFNWEQEIQRFSP-SLQV 664
Query: 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
+L G + LT+ +V++ +Y L R + E+ +++ + DE+ ++ +
Sbjct: 665 FQYLGAGRKKVLDKLTQ-GQVLLTTYGTLMRDAVKLKERVFSICVADEAQAMKNPLSMTS 723
Query: 333 PEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
K++ + A+ K + L+GTP + D++ L P LLG K+ FAKTY D K
Sbjct: 724 ----KSMRLINAEFK--IALTGTPVENNLGDLWSLFEFLNPNLLGTYKH-FAKTYLDAKC 776
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL-KRSEI 451
+ LE L ++ +M+RR K + +LPPK Q++ L + E
Sbjct: 777 SEK-------------NLESLRQTIR-PLMLRRKKSEVAKELPPKTEQLLYCELGEEQEK 822
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511
+ + + +KD + +TP + + A RL ++ + + E I
Sbjct: 823 IYREMHAYYSQEKQKD--DKETP--GGKGNMLAALTRLRQVVCHPYLVNEDYRHIESAKI 878
Query: 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
+ +I++ + V K +IF+ + LD ++E I + R+DG+T +DRQ
Sbjct: 879 NLLISQLE-----QVFASGAKALIFSQFTQFLDLIEEAIQMNKWNYTRLDGST--KDRQV 931
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
V F + + + +I + AGG GL+ + AQ V ++ +P+ QA DRA+R GQ A
Sbjct: 932 PVQEFNENEKCRFFLISLKAGGTGLNLTQAQYVYIMDPWWNPAAESQAIDRAYRIGQEKA 991
Query: 632 VNIYIFCAKDTTDESHWQ 649
V+ Y AKDT ++ Q
Sbjct: 992 VSAYRIVAKDTIEDKLLQ 1009
>gi|381157427|ref|ZP_09866661.1| DNA/RNA helicase, superfamily II, SNF2 family [Thiorhodovibrio sp.
970]
gi|380881290|gb|EIC23380.1| DNA/RNA helicase, superfamily II, SNF2 family [Thiorhodovibrio sp.
970]
Length = 1174
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 225/486 (46%), Gaps = 61/486 (12%)
Query: 177 RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQ 232
R HL++ E+ K+P +L + +Q++G R+ R G CL AD+MGLGKT+Q
Sbjct: 691 RLAHLAE--ARELEPKIPSTLQAELREYQIDGYRWLARLAHWGAGACL-ADDMGLGKTVQ 747
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP- 291
A+ + G LV+ P + +W EE R+ P P L FG + L +
Sbjct: 748 ALGLILSRAPEGPTLVLAPTSVCGNWLEETARFAPTLNP----LRFGSGDRAAMLEQAGP 803
Query: 292 -RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
++V+SY +L K + + +W ++ DE+ + ++ +A++ + + V
Sbjct: 804 FDLIVVSYGLLQTEGKRLAKANWQTIVADEAQAFKNARTLRS----QAIMQLKGAFR--V 857
Query: 351 LLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
+ +GTP L +++F IN PGLLG + A+ ++ QD
Sbjct: 858 ITTGTPIENHLGELWNLFRFIN---PGLLGSLESFNARFANPIEQ--------HQDRDAR 906
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD 467
RL +L + ++RRLK +L +LP + + + L SE +A D +
Sbjct: 907 ARLRQL----LRPFILRRLKSEVLSELPSRTEITLTVELSDSEKALYEAVRQEAIDRLAN 962
Query: 468 ATNDKTPKD------SDEHDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
A P ++ ACC RL + L +KL F E +
Sbjct: 963 AEATANPGQQRMQLLAEIMRLRRACCHPRLA-LPDSPLPGSKLDAFAEMVE--------- 1012
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
++ +K ++F+ + L ++E + +GI + +DG+T R++AV +FQ S
Sbjct: 1013 -----ELLENRHKALVFSQFVDHLQIIREHLDSRGIHYQYLDGSTPEPKRRAAVTAFQ-S 1066
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
E + +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY A
Sbjct: 1067 GEGDLFLISLRAGGSGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQERPVTIYRLVA 1126
Query: 640 KDTTDE 645
KDT +E
Sbjct: 1127 KDTIEE 1132
>gi|14548140|gb|AAK66797.1|U40238_20 SWI/SNF family helicase [uncultured crenarchaeote 4B7]
Length = 570
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 213/467 (45%), Gaps = 60/467 (12%)
Query: 195 KSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254
K +L FQ EG+ F ++ G L+ADEMGLGKT+Q +A + ++ L++ P +
Sbjct: 103 KQFRGTLLDFQREGLDFLIKSSGNALLADEMGLGKTVQTLAYLSKEKNSFPALIIAPLVT 162
Query: 255 RLSWAEELERW----------LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
+W E++++ + +P+ + RN + +I+Y +L++
Sbjct: 163 LTNWQREIQKFLKKKGKNGKIIEDGVPSSTMI----RNGKLADIDEYDFYIINYELLNKR 218
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
++ L+ DE H+R SK T + VK L A VK V LSGTP +R +I
Sbjct: 219 LPDLLNLGIRSLVCDEVQHLR-SKTTQKYAAVKE-LAAAESVKYRVGLSGTPIYNRGSEI 276
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE----LNVLLKQT 420
+ +++L PGLLG K +F + +C V + K + LE L L +
Sbjct: 277 WPIVDILKPGLLGSFK-EFCEYFCYV-----------NEKGKAIVLENKRDTLRNQLTKH 324
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA--KAAVGVINDSEKDATNDKTPKDSD 478
VM+RR K +L +L K R E++ A K ++ K ++ +S
Sbjct: 325 VMLRRKKSDVLKELKDKVRY--------PEMIHADEKFYKAELSKIWKKLEEEQKYAES- 375
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
D S + R + Q G+AKLS +++ I ES +++F H
Sbjct: 376 AFDKSASYHRAIESERQAAGLAKLSHVTNFVTNIMEIEES--------------VVVFCH 421
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H + + +S+ I G RQ + FQ + K+ I G+ AG VG++
Sbjct: 422 HKAIHSLLHHSLSDYDPA--SIIGGQTDVVRQREIDRFQ-KGQTKLMIAGLRAGNVGINL 478
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A+ V+F EL SP++ QAEDR HR GQ + V Y K T DE
Sbjct: 479 TTAKYVIFAELDWSPAIHRQAEDRLHRIGQKNTVFAYYLVGKGTLDE 525
>gi|428297893|ref|YP_007136199.1| SNF2-like protein [Calothrix sp. PCC 6303]
gi|428234437|gb|AFZ00227.1| SNF2-related protein [Calothrix sp. PCC 6303]
Length = 1403
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 226/471 (47%), Gaps = 59/471 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P + + +Q EG + R G CL AD+MGLGKT+QA+ + G+ L
Sbjct: 938 EIPSTFQAELREYQTEGFNWMARLSHWGVGACL-ADQMGLGKTVQALGVILTRAQNGATL 996
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
++ P + +W E E++ P I G+R + + +VV SY +L + +
Sbjct: 997 IIAPTSVCSNWVSEAEKFAPTL--NIIQFGSGNRQKTLDELQPFDMVVCSYGLLQQEEVA 1054
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + + +W +++DE+ ++ +KR+ +A +++ A K I +GTP L
Sbjct: 1055 QMLAQIEWQTIVLDEAQAIKNMTTKRS------QAAMNLKAGFKLIT--TGTPIENHLGE 1106
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG K ++ +QD + +L++L Q
Sbjct: 1107 LWNLFRFIN---PGLLGSFDSFNQKFAVPIEK--------YQDKAARTKLKKL----VQP 1151
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR+K +L +LP + ++ + L + E +A A+ ++DS+ A
Sbjct: 1152 FLLRRIKNEVLQELPSRTEILLHVELSKEETAFYEALRREAIAKLSDSDSTAGQKHLQVL 1211
Query: 477 SDEHDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
++ ACC RL ++ +L +KL F E L D+ +K +
Sbjct: 1212 AEIMRLRRACCNSRL-VMAESDLPSSKLQLFGEVLG--------------DLLENRHKAL 1256
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+F+ + L ++ ++ ++ I + +DG+T +R+ V +FQ E + +I + AGG
Sbjct: 1257 VFSQFVDHLHIIKNYLEDQNIKYQYLDGSTPAAERKKRVDAFQ-GGEGDVFLISLKAGGT 1315
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T ++
Sbjct: 1316 GLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKNTIED 1366
>gi|302833439|ref|XP_002948283.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
nagariensis]
gi|300266503|gb|EFJ50690.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
nagariensis]
Length = 1091
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 211/473 (44%), Gaps = 49/473 (10%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q++G+ + + G ++ADEMGLGKTLQ I++ A G +V+ P
Sbjct: 173 YQMQGLNWMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLG 232
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E R+ P H G+ +H RF VVV SY M+ + +
Sbjct: 233 NWVNEFRRFCPIIRVTKFH---GNNEERMHQKESTCAPGRFD-VVVTSYEMVIKEKNHFK 288
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H R S +V L K +L++GTP + ++++ +N
Sbjct: 289 RFHWRYIIIDEAH--RIKNENSRLSQVVRQL----KTNYRLLITGTPLQNNLHELWALLN 342
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L P + A+ F + + + + ++ Q K +R ++RR+K
Sbjct: 343 FLLPEIFSSAE-KFEEWFSMGDGSKEKEAEVVQQLHKVLR----------PFLLRRVKSD 391
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+ LPPK+ I+++ + + K + + DA N +D +L
Sbjct: 392 VERGLPPKKETILKIGMSDMQ----KKWYAALLQKDIDALNGG----ADRAKLLNVVMQL 443
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLD 544
K +++ +I S +D + R ++++IF+ +++D
Sbjct: 444 RKCCNHPYLFQGAEPGPPFITGEHLIENSGKLVLLDKLLPRLKERDSRVLIFSQMTRMID 503
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQN 603
++++ +G G+ RIDGNT DR + + F N K I ++ AGG+G++ ++A
Sbjct: 504 ILEDYCLYRGYGYCRIDGNTGGDDRDNMIDEFNKPNSSKFIFLLSTRAGGLGINLATADI 563
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
VV + +P + LQA DRAHR GQ V ++ FC +++ +E + K LR
Sbjct: 564 VVLYDSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLR 616
>gi|225352246|ref|ZP_03743269.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157493|gb|EEG70832.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 1158
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 232/511 (45%), Gaps = 69/511 (13%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACF 240
+++D ++P++L +V+ P+Q+EG ++ +G ++ADEMGLGK++Q +++
Sbjct: 668 KIIDPKRYEVPRNLKNVLRPYQVEGFQWLSTLWDKGFGGILADEMGLGKSVQLLSLVEAR 727
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR--------------NNPVH 286
+G L+VCPA L +WA E E+ F I +V G + NP
Sbjct: 728 KGSGPALIVCPASLVYNWAAECEK---FTQDLTIEVVAGTKAQRRKLIAAVAQQWKNPSE 784
Query: 287 LTRFPR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344
R VV+ SY +L R +AL+ +DE+ ++ + + KAV + A
Sbjct: 785 SNDMQRTDVVITSYDLLRRDVDDYAACRFALMALDEAQYI----KNHATKLAKAVKQITA 840
Query: 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404
+ + L+GTP +R +++ + L PGLLG F + Y G + + D
Sbjct: 841 EHR--FALTGTPIENRLSELWSIFDFLMPGLLGTYT-KFREKYEQPIMAPGSEHSVMAD- 896
Query: 405 SKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS 464
+L+ L L + RRLK+ +L LP K ++ + L+ + + ++
Sbjct: 897 ----KLQALVGLFIK----RRLKKDVLTDLPDKFENVLTVKLE-----GEQRKLYAAHEQ 943
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GA 521
AT KT KD+D + KI +A+ + RE + P + +D +
Sbjct: 944 RLRATLTKT-KDADFNTK--------KIRI----LAEFTLLRE-ICCDPRLVYADAKNAS 989
Query: 522 ADIDV--------NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
A +D S K+++F+ LD + ++E+G+ F I G T + R V
Sbjct: 990 AKLDAICELVSTCMDESKKVLVFSQFTSFLDLIGTRLAEQGVDFYTITGETPKKRRVELV 1049
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F N+V + +I + AG GL+ A VV + + + QA DRAHR GQT VN
Sbjct: 1050 DEFN-GNDVPVFLISLKAGNTGLNLVGASVVVHADPWWNAAAQNQATDRAHRIGQTQDVN 1108
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
+Y AKDT +E + K T+G
Sbjct: 1109 VYQIVAKDTIEERILKLQEKKSELAQQFTDG 1139
>gi|320354706|ref|YP_004196045.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
gi|320123208|gb|ADW18754.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
Length = 1363
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 132/502 (26%), Positives = 236/502 (47%), Gaps = 62/502 (12%)
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG---- 216
+E+L+H T R + EM K+P +L + +Q EG + R
Sbjct: 869 LEELTHQAQTTADKGWRQRLQAIAEAQEMTPKVPSTLKAELREYQREGFVWMSRLAHLGV 928
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKTLQ+IA+ G LVV P + ++W E+ R+ P H+
Sbjct: 929 GACL-ADDMGLGKTLQSIAVILSLAHQGPSLVVAPTSVCMNWETEVRRFAPTL---TFHM 984
Query: 277 VFGHRNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSE 332
+ + L +F ++V SYT+L + + + + W +++DE+ ++ +KR+
Sbjct: 985 FSEANRDEIIPTLGKFD-LLVTSYTLLQQEIELLAQVKWQSIVLDEAQAIKNAATKRS-- 1041
Query: 333 PEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
KA + + + + I +GTP L +++F IN PGLLG K F + +
Sbjct: 1042 ----KAAMRLDGRFRLIT--TGTPIENHLGELWNLFSFIN---PGLLGTYK-QFNRRF-G 1090
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
+ + + + + K +R M+RR+K +L +LPP+ +R+ ++
Sbjct: 1091 IPIEKHHDREARRTLKKLIR----------PFMLRRIKSQVLEELPPRTEITLRVEMQPQ 1140
Query: 450 EI-----VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
E+ + +A + SEK + + ++ ACC I+ Q ++ KL
Sbjct: 1141 ELQFYEALRQQAIENIEGSSEKTGRHLRIL--AEIMRLRRACCNPRLINDQVDIPSTKLQ 1198
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
F E + E G +K +IF+ L +++F+ ++GI + +DG
Sbjct: 1199 VFAE------TVEELLGGG--------HKALIFSQFTGHLALIRDFLDDRGISYKYLDGT 1244
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T ++RQ V FQ + E + +I + AGG+GL+ ++A V+ ++ +P++ QA DRA
Sbjct: 1245 TPAKERQQQVERFQ-AGEGDLFLISLKAGGLGLNLTAADYVIHMDPWWNPAVEDQAADRA 1303
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
+R GQ V +Y +T +E
Sbjct: 1304 YRIGQKRPVTVYRLVTANTIEE 1325
>gi|41053461|ref|NP_956607.1| chromodomain-helicase-DNA-binding protein 1-like [Danio rerio]
gi|82209540|sp|Q7ZU90.1|CHD1L_DANRE RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
gi|29791985|gb|AAH50498.1| Chromodomain helicase DNA binding protein 1-like [Danio rerio]
Length = 1026
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 229/515 (44%), Gaps = 61/515 (11%)
Query: 203 PFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAA----CFISAGSILVVCPAILR 255
P+QL+GV++ ++ C++ DEMGLGKT Q I++ A G LV+CP +
Sbjct: 37 PYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVL 96
Query: 256 LSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+W +ELER+ P C D + N RF V++ +Y M + + +
Sbjct: 97 ENWRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRF-HVLLTTYEMCLKDARYLKSW 155
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W +L+VDE+H R + S + V +V LL+GTP + +++ + +
Sbjct: 156 KWKILVVDEAH--RLKNQESLLHQTLKEFTVGFRV----LLTGTPIQNNLQEVYSLLTFI 209
Query: 372 WPGL-LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P + L +A DF Y D++T + ++EL+ +L Q ++RR+K +
Sbjct: 210 QPSVFLPEAVEDFVNAYADIQT-------------EPALVDELHQVL-QPFLLRRVKAEV 255
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE-HDDSGACCRL 489
+LP K++E+V + +K +D D D RL
Sbjct: 256 AAELP-----------KKTELVVFHGLSAL----QKRYYKAILMRDLDAFRTDQSTKTRL 300
Query: 490 GKISYQELGIAKLSGFREWLSIHPV-----IAESDGAADI------DVNPRSNKMIIFAH 538
+ Q + + P + E+ G + + + +++F+
Sbjct: 301 LNVLMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQ 360
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
++LD +Q+++ +G + R+DG+ +R A+ +F + +V I ++ AGGVG++
Sbjct: 361 MTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFS-TKDVFIFLLSTKAGGVGMNL 419
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
++A V+F++ +P LQA RAHR GQT V + +DT +E + LR
Sbjct: 420 TAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLT 479
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDL 693
+ +L + A S L++S+ G + L
Sbjct: 480 DTVIEEGRFSLLDQAQSAASGLQLSEILKFGVDKL 514
>gi|324502629|gb|ADY41155.1| DNA excision repair protein ERCC-6, partial [Ascaris suum]
Length = 1156
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 124/518 (23%), Positives = 225/518 (43%), Gaps = 100/518 (19%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRC---LIADEMGLGKTLQAIAIAACFISA----- 243
++P + + +Q GVR+ +C ++ADEMGLGKT+Q I CF+ A
Sbjct: 256 RVPNVCWNKLFKYQKTGVRWLSELHEQCVGGILADEMGLGKTIQVI----CFLRALAFSQ 311
Query: 244 -----------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-LTRFP 291
G +L++CP L W +E W P C A +H R H L++F
Sbjct: 312 AETRGFGFRGLGPVLLICPTTLMHQWLKEFHNWFPLCRIAVLHSSGCFRGPQSHLLSKFS 371
Query: 292 R------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345
++ SY+ + RK++ +W +I+DE H + R + +AV +V +
Sbjct: 372 TYRKDGCTLLTSYSTFTKKRKALANANWHYVILDEGHKI----RNPGAQMTRAVKEV--R 425
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
++L+G+P + +++ ++ ++PG LG A F + + T GY
Sbjct: 426 TPHRLILTGSPLQNSLKELWSLMDFVYPGRLG-ALQTFTEKFAIPITQGGYANASAIQVR 484
Query: 406 KGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--------RLLLKRSEIV 452
+ +L+ + ++RR+K+ + VQLP K Q++ R K + +
Sbjct: 485 TAYKCA---CVLRDAINPYILRRMKKDVEMTVQLPSKTEQVLFCNITPCQRTFYK--DYI 539
Query: 453 SAK-----------AAVGVIN--------DSEKDATNDKTPKDS--DEHDDSGACCRLGK 491
S++ A VG+I D N + DE D GA R GK
Sbjct: 540 SSRECARILAGGMDAFVGLITLRKLCNHPDLVTGGPNKHNEYNVTLDEEMDFGAASRSGK 599
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
+ I + + W ++ K+++F+ ++L +++F+
Sbjct: 600 M------IVLKALLKLW------------------KDQNQKVLLFSQSRQMLTLLEKFVI 635
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
++G ++R+DG+T RQ V F + ++ + ++ GG+G++ + A VV +
Sbjct: 636 KEGYEYLRMDGSTPIGSRQPLVEKFNTNEDIFLFLLTTKVGGLGVNLTGANRVVIFDPDW 695
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
+PS +QA +RA R GQ AV +Y T +E +Q
Sbjct: 696 NPSTDVQARERAWRIGQERAVTVYRLLTSGTIEEKIYQ 733
>gi|85014197|ref|XP_955594.1| DNA repair and recombination protein [Encephalitozoon cuniculi
GB-M1]
Length = 695
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/513 (24%), Positives = 225/513 (43%), Gaps = 110/513 (21%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR-----RGGRCLIADEMGLGKTLQAIAIAACFISAGSI- 246
+P L + P+Q +GVR+ LR +GG ++AD+MGLGKT+Q I + + +
Sbjct: 143 VPGFLWSSLFPYQQDGVRWMLRLYRDEKGG--VLADDMGLGKTIQVIVFLGALLHSRVVS 200
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L++CPA + W +E +R+ PF + + FG N V ++SY
Sbjct: 201 KALILCPATIVSQWMDEWKRFYPF-----VRIFFGFPNEDCE-----GVYLMSYEKFKAG 250
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRP 361
K+ + W +LI+DE H ++ +K VK A+ + +LSGTP +L
Sbjct: 251 VKNFL---WDVLILDEGHRIK-NKNAQITLSVK-----KARSRGRFVLSGTPIQNNLGEL 301
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+ IF +N PGLLG + F + + +V GY+ K R + L +
Sbjct: 302 WSIFDFVN---PGLLG-SHTSFNEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPY 357
Query: 422 MIRRLKQHLLVQLPPKR----------------------RQIIRLLLKRSEIVSAKAA-- 457
++RR K + +LP K + I+++L ++ ++S +
Sbjct: 358 ILRRTKSQVSHKLPSKEDKIVFCSLTPAQIELYNRVLESKHIMKVLTGKANLLSGISMLR 417
Query: 458 -------------VGVINDSEKDATNDKTPKDSD--------EHDDSGACCRLGKISYQE 496
+GV D E++A+++K +D +D + C++ KI
Sbjct: 418 KVCNHPRLLFPRKLGVSEDCEEEASDEKNGEDEALELPGADVSYDLVSSSCKI-KILVDL 476
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
L ++W S NK+++F+ +++LD ++ + +
Sbjct: 477 L--------KKWRS------------------EGNKVLVFSQTIRMLDIIERCV--RKYT 508
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
++R+DG T R V F +V + ++ GG+GL+ + A +V + +PS
Sbjct: 509 YLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIVIYDPDWNPSTD 568
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
QA++RA R GQ V IY F KDT +E +Q
Sbjct: 569 TQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQ 601
>gi|158341292|ref|YP_001522344.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
gi|158311533|gb|ABW33144.1| helicase, SNF2 family [Acaryochloris marina MBIC11017]
Length = 1406
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 126/474 (26%), Positives = 234/474 (49%), Gaps = 65/474 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + +Q+EG R+ + G CL AD+MGLGKTLQA+A+ G L
Sbjct: 940 EIPSTLQVQLRDYQIEGFRWLAKLSHWGVGACL-ADDMGLGKTLQALAVILTRAPHGPTL 998
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHR- 303
+V P + ++W +E +R+ P P L F + N HL F +++ SY +L +
Sbjct: 999 IVAPTSVGMNWHKEAKRYAPTLTP----LQFDNSNRQQLLEHLKPF-DMLICSYGLLQQA 1053
Query: 304 -LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---S 357
+ + + + W +++DE+ ++ +KR+ +A + + ++K ++ +GTP
Sbjct: 1054 EVAEMLAQVRWQTIVLDEAQAIKNFSTKRS------QAAMKLQGELK--IITTGTPIENH 1105
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
L +++F IN PGLLG F + + ++ +Q + + K L
Sbjct: 1106 LGELWNLFRFIN---PGLLGSLD-SFNQRFA--IPIERHQDKAARSCLKK---------L 1150
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKT 473
Q ++RR K +L +LP + ++++ L E+ +A A+ +N+S+ +
Sbjct: 1151 IQPFILRRTKSQVLEELPSRTEIVLQVDLSPEELAFYEALRQDALAKLNESDAASGPKHI 1210
Query: 474 PKDSDEHDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
++ ACC RL + +L AKL F E L+ ++ +
Sbjct: 1211 QVLAELMRLRRACCNPRL-VLPETDLPSAKLQLFAEVLN--------------ELLDNKH 1255
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++F+ + L+ ++ ++ E+ I + +DG+T ++R V +FQ + E +I +I + A
Sbjct: 1256 KALVFSQFVDHLEIIRRYLDEQQIQYQYLDGSTPAKNRHKRVDAFQ-AGEGEIFLISLKA 1314
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK T +E
Sbjct: 1315 GGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKGTIEE 1368
>gi|402889336|ref|XP_003907975.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like,
partial [Papio anubis]
Length = 612
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ ++PFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 411 LTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 470
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + RWLP P I++V ++ LT + ++S+ +
Sbjct: 471 RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD---RLTAG-LINIVSFDL 526
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L +L K + + + ++I+DESH ++ S RT+ VL VA KR++LLSGTP++SR
Sbjct: 527 LSKLEKQL-KTPFKVVIIDESHFLKNS-RTARCRAAMPVLKVA---KRVILLSGTPAMSR 581
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
P +++ QI + P + + F YCD K
Sbjct: 582 PAELYTQIIAVKPTFFPQF-HAFGLRYCDAK 611
>gi|218191385|gb|EEC73812.1| hypothetical protein OsI_08529 [Oryza sativa Indica Group]
Length = 1765
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 116/446 (26%), Positives = 210/446 (47%), Gaps = 62/446 (13%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+ I++ A I L+V P + L+W E +W C I
Sbjct: 544 ILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW---CPAFKIL 600
Query: 276 LVFG------HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
FG + + V + +Y ++ + K + W LI+DE+H ++ K
Sbjct: 601 TYFGSAKERKQKRQGWMKPNYFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWK- 659
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ + +L+ +K R +LL+GTP + +++ ++ L P + ++ +F +C+
Sbjct: 660 ---SQRWQTLLNFNSK--RRILLTGTPLQNDLMELWSLMHFLMPHVF-QSHQEFKDWFCN 713
Query: 390 --VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK 447
V+G QD ++ L+ +L+ ++RRLK+ + QLP K +I L
Sbjct: 714 PISGMVEG------QDKVNKEVIDRLHNVLR-PFILRRLKRDVEKQLPQKHEHVIYCRLS 766
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
R + I SE AT L +Y + I+ + R+
Sbjct: 767 RRQ---RNLYEDFIASSETQAT-------------------LASGNYFGM-ISIIMQLRK 803
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
L+I +S+G ++ +IF K+LD ++EFI+ G ++R+DG+T P
Sbjct: 804 ELAILLRRLKSEG----------HRALIFTQMTKMLDILEEFINLYGYTYLRLDGSTQPE 853
Query: 568 DRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
+RQ+ + F + + + I+ +GGVG++ A V+F + +P++ QA+DR HR G
Sbjct: 854 ERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG 913
Query: 628 QTSAVNIYIFCAKDTTDESHWQNLNK 653
QT V+IY ++ T +E+ + N+
Sbjct: 914 QTREVHIYRLISESTIEENILKKANQ 939
>gi|449137860|ref|ZP_21773169.1| SNF2-related protein [Rhodopirellula europaea 6C]
gi|448883527|gb|EMB14051.1| SNF2-related protein [Rhodopirellula europaea 6C]
Length = 1386
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 123/477 (25%), Positives = 225/477 (47%), Gaps = 58/477 (12%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAAC 239
E D + K+PK+L + +Q++G ++ R G CL AD+MGLGKTLQ +A+
Sbjct: 917 ESADRVRPKVPKTLNAELRDYQVDGFKWMSRLAHLGAGACL-ADDMGLGKTLQCLAVLLN 975
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
+G LVV P + +W E+ R+ P P I R V +++ SY
Sbjct: 976 RGKSGPALVVAPTSVAANWVSEIARFAPSLRP--ILFSEADRETVVESLGKRDLLICSYG 1033
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP--- 356
+L + + + W L++DE+ ++ +E + +A + + A + ++L+GTP
Sbjct: 1034 LLANEAQKLQSRRWQTLVLDEAQAIK----NAETKRSEAAMGLEADFR--IVLTGTPMEN 1087
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
L +++F IN PGLLG + + +Q + + R ++
Sbjct: 1088 HLGELWNLFQFIN---PGLLGSS--------------ESFQERFAIPIERDHR-RDVQRQ 1129
Query: 417 LKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
LKQ + ++RR K +L +LPP+ + + L +E +A + +D+ +D+
Sbjct: 1130 LKQLIAPFILRRTKSQVLDELPPRTEITVPIELGENEAAMYEAIRQKALQNLEDSDDDR- 1188
Query: 474 PKD----SDEHDDSGACCRLGKISYQE-LGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
P ++ CC + L AKL F E ++ D+
Sbjct: 1189 PMHIKILAELMRLRRFCCHPDLVDPNAGLEAAKLERFTETVT--------------DLIA 1234
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+K+++F+ + L +++ + E+ I + +DG+T + R+++V +FQ E + +I
Sbjct: 1235 GGHKVLVFSQFVGHLQLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQ-DGEGDVFLIS 1293
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVGL+ ++A V+ ++ +P++ QA DRAHR GQ V +Y F T +E
Sbjct: 1294 LKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDRAHRMGQQRPVTVYRFITTGTIEE 1350
>gi|261337693|ref|ZP_05965577.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
gi|270277134|gb|EFA22988.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
Length = 1221
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 231/499 (46%), Gaps = 72/499 (14%)
Query: 175 PCRPEHLSD-EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR------GGRCLIADEMGL 227
P +++ D +VVD +P +L + P+QLEG R+ LR GG ++AD+MGL
Sbjct: 729 PSFRDYIGDVKVVDPQRYVVPAALHATLRPYQLEGYRW-LRTLMDKHLGG--ILADDMGL 785
Query: 228 GKTLQAIAI---AACFISAGSI---------LVVCPAILRLSWAEELERWLPFCLPADIH 275
GKT+Q I++ A SI LVVCPA L +WA EL + P LP +
Sbjct: 786 GKTVQMISVLVDATAREQQESIQEQRQPDPCLVVCPASLVYNWARELRNFAP-DLP--VS 842
Query: 276 LVFG----HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
+V G R LT VVV SY + + +Q W ++++DE+ ++ + T
Sbjct: 843 VVAGAKAQRRKQYADLTG---VVVTSYDVFRLDIDDLADQRWLVMVLDEAQAIK-NPATK 898
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+ VK A+ + L+GTP +R +++ + L PG LG + F TY K
Sbjct: 899 IAQAVKR-----AQARHRFALTGTPIENRLSELWSIFDFLMPGFLGSYR-SFRDTY--EK 950
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL---KR 448
+ + + Q VR ++RRLK+ +L LP K +I + L +R
Sbjct: 951 PMLDGRDDVAQRLHHAVR----------PFILRRLKRDVLTDLPEKTESVIDVALTGEQR 1000
Query: 449 SEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
+++ + ++ S +D D+ S CC ++ ++ + A
Sbjct: 1001 KLYAASERKLRMMLQSSQDMNEDRFQVLSALTQLRQLCCD-PRLVFENVSHAG------- 1052
Query: 509 LSIHPVIAESDGAADIDVNPRSN--KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
A+ D A++ R + K++IF+ + LD + + + E G+ + I G+T
Sbjct: 1053 -------AKMDAIAELVTAARESGQKVLIFSQFVSFLDLIADMLDELGVAHMAITGSTPK 1105
Query: 567 RDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+ R V +F + ++ + +I + AGG GL+ + A V+ + + + QA DRAHR
Sbjct: 1106 QRRLELVDTFNM-DDTPVMLISLKAGGTGLNLTGASVVIHADPWWNEAAQNQATDRAHRI 1164
Query: 627 GQTSAVNIYIFCAKDTTDE 645
GQ VN+Y A DT +E
Sbjct: 1165 GQRHTVNVYKIVASDTVEE 1183
>gi|145349184|ref|XP_001419020.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579250|gb|ABO97313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 956
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 207/472 (43%), Gaps = 69/472 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q+ G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 95 YQIAGLNWMIRLFDHGINGILADEMGLGKTLQTISLLGYLAEYRGVTGPHMVVVPKSTLG 154
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W E +RW P H R P V V SY M+ + + ++ + W
Sbjct: 155 NWMNEFKRWCPMIRTFKFHGNAEEREAQKAKFLVPGGFDVCVTSYEMVIKEKTALKKFHW 214
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + VL + R+ L++GTP + ++++ +N L P
Sbjct: 215 RYIIIDEAHRLK-----NENSRLSIVLRTFSANNRM-LITGTPLQNNLHELWALLNFLLP 268
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ G A F + + +V+ +G G + K +R ++RRLK +
Sbjct: 269 EVFGNAG-QFDEWFANVEDGEGGSGAVVSQLHKVLR----------PFLLRRLKTEVETS 317
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
LPPK+ I+++ + + K + KD D + RL I
Sbjct: 318 LPPKKETILKIGMTEMQKTFYKRIL---------------QKDIDIVNSGADRSRLLNIV 362
Query: 494 YQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMI 534
Q E G ++G +I S A +D + R ++++
Sbjct: 363 MQLRKCCNHPYLFQGAEPGPPYITG-------DHLIESSGKLALLDKLLPRLMQRGSRVL 415
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGG 593
IF+ ++LD +++++ + + RIDG+T R+ + +F K ++ AGG
Sbjct: 416 IFSQMTRLLDILEDYLMYRNYQYCRIDGSTDGAVREDHIDAFNKEGSEKFCFLLSTRAGG 475
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+G++ ++A V+ + +P + LQA DRAHR GQ V ++ FC + +E
Sbjct: 476 LGINLATADTVIIYDSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCTDGSVEE 527
>gi|91204322|emb|CAJ71975.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length = 1383
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 128/473 (27%), Positives = 225/473 (47%), Gaps = 52/473 (10%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFI 241
V E I +P +L + +Q+EG ++ R R G CL +D+MGLGKT+QA+ +
Sbjct: 912 VRERIPAVPTTLQADLRNYQVEGFQWLSRLSDWRVGACL-SDDMGLGKTIQALTVILEHA 970
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
G LV+ PA + ++W E R+ P L I R + ++V SY +L
Sbjct: 971 KEGPSLVIAPASVCMNWISEASRFAP-TLNVSIFGEEKDRKEAIKKQGPFDLLVCSYGLL 1029
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SL 358
+ K + ++ W ++I+DE+ + + S + KA + + K ++ +GTP L
Sbjct: 1030 QQEEKILADKKWTIIILDEAQAI----KNSNTKRSKAAMALKGDFK--IITTGTPIENHL 1083
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+++F IN PGLLG K K ++ + +Q +L RL++ L
Sbjct: 1084 GELWNLFQFIN---PGLLGSIKRFNEKYAIPIERDKSHQARL--------RLKK----LI 1128
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTP 474
Q ++RR K +L +LPPK + + + E +A A+ I +
Sbjct: 1129 QPFILRRTKAQVLEELPPKTEITLSVEMTPEESAFYEALRQKAIDNIESFDFGKGEGYLR 1188
Query: 475 KDSDEHDDSGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
++ ACC RL + L +K+ F E V+ E + ++K
Sbjct: 1189 VLAEIMKLRRACCHSRL-VVPGHSLESSKIRLFGE------VVQE--------LMENNHK 1233
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++F+ + L ++E++ I + +DG+T ++R+ +V +FQ S E ++ +I + AG
Sbjct: 1234 ALVFSQFVDYLAIIREYVEGLNISYQYLDGSTPMKERKRSVDAFQ-SGEGELFLISLKAG 1292
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G+GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY K T +E
Sbjct: 1293 GLGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVTKGTIEE 1345
>gi|281207984|gb|EFA82162.1| SNF2-related domain-containing protein [Polysphondylium pallidum
PN500]
Length = 498
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 139/265 (52%), Gaps = 26/265 (9%)
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
ELN+ L++ +MIRR K +L +LP RR+ I + +K+SE+ KA + I + +
Sbjct: 17 ELNLYLER-IMIRRKKDEVLTELPEMRREKIMVEVKKSEMKKIKAVMENIKSARQ----- 70
Query: 472 KTPKDSDEHDDSGACCRLGKIS------YQELGIAKLSGFREWLSIHPVIAESDGAADID 525
K + S +++ G GK +++ G+ K++ +++ D
Sbjct: 71 KMEESSKDNNRKGVNSEGGKRKSLYTQLFRDTGLGKMAAISKFIE--------------D 116
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
++K +IFAHH V+DG+++ + +K + +++IDG T R + V+ FQ ++K+A
Sbjct: 117 KLEDNSKFLIFAHHKTVMDGIEQLVKKKKVEYIKIDGTTPAHARSNLVNIFQTDEKIKVA 176
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I+ ITA G GL ++A +F EL +P +++QAE R HR GQ +V I +T DE
Sbjct: 177 ILSITAAGTGLTLTAASVAIFAELYWTPGVLMQAEARVHRFGQNRSVLIQYLVGINTIDE 236
Query: 646 SHWQNLNKSLRCVSSATNGKYDALQ 670
S W L + +G+ D L+
Sbjct: 237 SIWSMLESKKDVLGRILDGESDTLE 261
>gi|194751939|ref|XP_001958281.1| GF10842 [Drosophila ananassae]
gi|190625563|gb|EDV41087.1| GF10842 [Drosophila ananassae]
Length = 1971
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 219/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 717 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 776
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 777 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 836
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ S + +L+ A + +LL+GT
Sbjct: 837 TSYELISMDAACLGSIDWAVLVVDEAHRLK-----SNQSKFFRILNSYA-IAYKLLLTGT 890
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 891 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 935
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 936 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 990
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 991 GSCSLINIMMDLKKCCNHPYLFPSAAEEAPTSAGGLYEINSLTKAAGKLVLLSKMLKQLK 1050
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG RQ A+ F + + +
Sbjct: 1051 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTVRQEAIDRFNAPGAQQFVFL 1110
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1111 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1169
>gi|195496103|ref|XP_002095551.1| GE22457 [Drosophila yakuba]
gi|194181652|gb|EDW95263.1| GE22457 [Drosophila yakuba]
Length = 1982
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 220/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 732 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 791
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 792 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 851
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 852 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYK----LLLTGT 905
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 906 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 950
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 951 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 1005
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 1006 GSCSLINIMMDLKKCCNHPYLFPSAAEEATTSAGGLYEINSLTKAAGKLVLLSKMLKQLK 1065
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG RQ A+ F + + +
Sbjct: 1066 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFL 1125
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1126 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1184
>gi|320353039|ref|YP_004194378.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
gi|320121541|gb|ADW17087.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
Length = 1447
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 125/442 (28%), Positives = 216/442 (48%), Gaps = 57/442 (12%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKT+Q +A G LV+ P + +W E R+ P +
Sbjct: 1012 GACL-ADDMGLGKTVQTLAAILHQAPQGPTLVIAPTSVCANWLAEARRFAPTL----NGI 1066
Query: 277 VFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTS 331
FG +N HL F +VV SY +LH+ + W +++DE+ ++ +KR+
Sbjct: 1067 PFGGTDRQNQIAHLGPF-DLVVASYGLLHQESHLLTAVQWQTVVLDEAQAIKNAATKRS- 1124
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+A + + A+ + V+ +GTP + + + N + PGLLG + + ++
Sbjct: 1125 -----QAAMHLQARFR--VVTTGTPIENHLGEFWTLFNFINPGLLGSRERFTTRFAAPIE 1177
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
D RL++L Q ++RRLK +L +LPP+ ++R+ L E
Sbjct: 1178 R--------HNDREVARRLKKL----VQPFILRRLKSQVLEELPPRTEVVLRVELSPEET 1225
Query: 452 VSAKA----AVGVINDSEKDATNDKTPKD--SDEHDDSGACC--RLGKISYQELGIAKLS 503
+A A+ I D+E+ TN + P ++ ACC RL + G AKL+
Sbjct: 1226 AFYEALRQQALERI-DAEQ-GTNGQKPMRILAEITRLRQACCHPRLLQADSTIAG-AKLA 1282
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
F E V+AE + +K ++F+ + L ++E++ + I + +DG+
Sbjct: 1283 LFGE------VVAE--------LLDNGHKALVFSQFVGHLALIREYLDARAIPYRYLDGS 1328
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T P++RQ V +FQ + + + +I + AGG+GL+ ++A V+ ++ +P++ QA DRA
Sbjct: 1329 TPPKERQREVEAFQ-AGQGDLFLISLKAGGLGLNLTAADYVIHMDPWWNPAVEDQASDRA 1387
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ V +Y A+ T +E
Sbjct: 1388 HRIGQQRPVTVYRLVAQQTIEE 1409
>gi|195128581|ref|XP_002008741.1| GI13663 [Drosophila mojavensis]
gi|193920350|gb|EDW19217.1| GI13663 [Drosophila mojavensis]
Length = 1992
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 220/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 723 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 782
Query: 256 LSWAEELERWLP--FCLPA-----------DIHLVF------GHRNNPVHLTRFP-RVVV 295
++W E E W P +C+ + L F G + + + T++ V++
Sbjct: 783 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELTFEEGAIRGTKVSRLRTTQYKFNVLL 842
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 843 TSYELISMDAPCLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYSIAYK----LLLTGT 896
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 897 PLQNNLEELFHLLN-----FLSREKFN---------DLQAFQGE-FADVSKEEQVKRLHE 941
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L K I +A N K+
Sbjct: 942 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELS----AMQKKFYKFILTKNYEALNSKSGG 996
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 997 GSCSLINIMMDLKKCCNHPYLFPSGSEDAPTSAGGIYEINSLTKAAGKLVLLSKMLKQLK 1056
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
+ ++++IF+ K+LD +++F+ + + RIDG+ RQ A+ F + + +
Sbjct: 1057 AQGHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTVRQEAIDRFNAPGAQQFVFL 1116
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1117 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1175
>gi|163795414|ref|ZP_02189381.1| swf/snf family helicase [alpha proteobacterium BAL199]
gi|159179400|gb|EDP63931.1| swf/snf family helicase [alpha proteobacterium BAL199]
Length = 1385
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 221/467 (47%), Gaps = 54/467 (11%)
Query: 192 KLPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP++L + +Q+EG R G CL AD+MGLGKT+QAIA+ G L
Sbjct: 923 RLPETLQAELRDYQIEGFVWMSRLARWGAGACL-ADDMGLGKTVQAIAVLLDQAEEGPCL 981
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P + +W E+ R+ P H + G R V+ V++ SYT+LH +
Sbjct: 982 VVAPTSVCPNWHAEIARFAPTL---RTHALAGDRAALVNGLSSRDVLICSYTLLHLAAEE 1038
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS---LSRPYDI 364
+ + W ++++DE+ ++ +E +A + A + + L+GTP L + +
Sbjct: 1039 LGTRPWRMVVLDEAQAIK----NAETRRAQATSSLQADFR--LALTGTPVENYLDELWSL 1092
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F +N PG LG ++ F K + + ++ +D R + L L++ M+R
Sbjct: 1093 FAFVN---PGFLG-SREGFQKRFA--RPIE-------RDRDPAAR-QALRALIR-PFMLR 1137
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEH 480
R K +L +LPP+ Q +R+ ++ E +A ++ + + A K ++
Sbjct: 1138 RTKAMVLHELPPRTEQTMRIEMEDGERAFYEALRRQSLDRLAAVDAPAGQRKIQILAEIT 1197
Query: 481 DDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
ACC I Q+ G+ KL+ F + + D+ ++ ++F+
Sbjct: 1198 RLRRACCNPALID-QDAGVPSGKLAAFLDLVD--------------DLVRNRHRALVFSQ 1242
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L V+ + +GI + +DG+T DR+ V +FQ + + +I + AGG GL+
Sbjct: 1243 FVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQ-AGTADVFLISLRAGGTGLNL 1301
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A VV L+ +P++ QA DR HR GQ V IY +D+ +E
Sbjct: 1302 TAADYVVHLDPWWNPAVEDQASDRVHRIGQERPVTIYRLIMQDSIEE 1348
>gi|392548557|ref|ZP_10295694.1| hypothetical protein PrubA2_19377 [Pseudoalteromonas rubra ATCC
29570]
Length = 1411
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 217/472 (45%), Gaps = 54/472 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +QL G + +R GG CL AD+MGLGKTLQA+A+ S G L+
Sbjct: 936 VPPTLQAQLRDYQLAGFDWAMRLAHWGGGACL-ADDMGLGKTLQALAVILARASEGPALI 994
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLHR 303
+ P + +W +E ++ P ++ L H N + VVISY +L R
Sbjct: 995 IAPTSVCFNWQQEASKFAP---ALNMTLFSDHSNAHEREQLLTQAGPFDCVVISYGLLQR 1051
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + + W +I DE+ ++ P + V A K + ++ +GTP +L+
Sbjct: 1052 QAELLKAKHWHTIIADEAQALK------NPLAKRTVAACALKGEFKMITTGTPIENNLTE 1105
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F +N PGLLG K + + Q + + + + L L+K
Sbjct: 1106 LWSLFRFVN---PGLLGNLKR------FNARFAQPMENAVQDKLAAHKARQSLKQLVK-P 1155
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKD--ATNDKTP 474
++RRLK +L +LP K + + L E+ +A A+ I +S A +
Sbjct: 1156 FILRRLKSQVLTELPEKTEINLTVSLSEDEMNFYEALRQHAIDQIMESSSTSSAAEQRIR 1215
Query: 475 KDSDEHDDSGACCRLGKISYQE-LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
++ ACC + + L +KL E L+ ++ ++K
Sbjct: 1216 MLAELTKLRQACCHPKLVMAESTLPSSKLEALSELLN--------------ELRQNNHKA 1261
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+IF+ + L ++ + + + + +DG+T RQ V++FQ N ++ +I + AGG
Sbjct: 1262 LIFSQFVGHLQIIKNLLEQSNVPYQYLDGSTPAAQRQERVNAFQHGNG-EVFLISLKAGG 1320
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK+T +E
Sbjct: 1321 SGLNLTAADYVIHMDPWWNPAVEAQASDRAHRMGQQRPVTIYRLIAKNTIEE 1372
>gi|227535766|ref|ZP_03965815.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
spiritivorum ATCC 33300]
gi|227244254|gb|EEI94269.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
spiritivorum ATCC 33300]
Length = 960
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 223/479 (46%), Gaps = 73/479 (15%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI-------AACFI 241
PK+ + P+Q G + + GG ++AD+MGLGKT+Q +A+ A
Sbjct: 491 PKNFKGQLRPYQKAGYNWFHFLQHYKFGG--VLADDMGLGKTIQTLALLQKQKEDAGEDG 548
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+ L++ P L +W +E ++ P L +H + L+ F +V+ +Y ++
Sbjct: 549 QPHTSLLILPTSLIYNWQKEASKFAP-KLRILLHTGTNRIKDNFSLSHFD-LVITTYGIV 606
Query: 302 HRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R + M+E+ + +I+DES +++ S KA+ + ++ K + LSGTP +
Sbjct: 607 -RSDEQMLEKFYFNYIILDESQNIKNPASKS----FKAIKSLKSRHK--LALSGTPVENS 659
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV---RLEELNVLL 417
D++ Q++ PGLLG Y +Q + Q K R ++L ++
Sbjct: 660 VSDLWAQMHFTNPGLLGTFTY--------------FQKEFVQPIEKKKDEERAKKLQSIV 705
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K ++ RR K + +LPPK QII + + ++ V ++ N T
Sbjct: 706 KPFIL-RRTKDQVATELPPKTEQIIYCEMTEDQ---SETYEKVKSEYRNALLNVNT---- 757
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD-----GAADI------DV 526
+D ++ + G+ KL L+ HP + + D G D+ V
Sbjct: 758 ---EDKAKTSQITLLQ----GLTKLRQ----LANHPKMIDDDFEGNSGKFDLVLETLESV 806
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
NK++IF+ +K L + + EKGI + +DG T ++R AV FQ + K+ +
Sbjct: 807 LHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGAT--KNRSEAVAEFQKNKNTKLFL 864
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I I AGGVGL+ A V L+ +P++ QA DR+HR GQT +V IY F KDT +E
Sbjct: 865 ISIKAGGVGLNLIEADYVFILDPWWNPAVEQQAVDRSHRIGQTRSVFIYKFITKDTVEE 923
>gi|163796791|ref|ZP_02190749.1| swf/snf family helicase [alpha proteobacterium BAL199]
gi|159178045|gb|EDP62592.1| swf/snf family helicase [alpha proteobacterium BAL199]
Length = 1385
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 221/467 (47%), Gaps = 54/467 (11%)
Query: 192 KLPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP++L + +Q+EG R G CL AD+MGLGKT+QAIA+ G L
Sbjct: 923 RLPETLQAELRDYQIEGFVWMSRLARWGAGACL-ADDMGLGKTVQAIAVLLDQAEEGPCL 981
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P + +W E+ R+ P H + G R V+ V++ SYT+LH +
Sbjct: 982 VVAPTSVCPNWHAEIARFAPTL---RTHALAGDRAALVNGLSSRDVLICSYTLLHLAAEE 1038
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS---LSRPYDI 364
+ + W ++++DE+ ++ +E +A + A + + L+GTP L + +
Sbjct: 1039 LGTRPWRMVVLDEAQAIK----NAETRRAQATSSLQADFR--LALTGTPVENYLDELWSL 1092
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F +N PG LG ++ F K + + ++ +D R + L L++ M+R
Sbjct: 1093 FAFVN---PGFLG-SREGFQKRFA--RPIE-------RDRDPAAR-QALRALIR-PFMLR 1137
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEH 480
R K +L +LPP+ Q +R+ ++ E +A ++ + + A K ++
Sbjct: 1138 RTKAMVLHELPPRTEQTMRIEMEDGERAFYEALRRQSLDRLAAVDAPAGQRKIQILAEIT 1197
Query: 481 DDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
ACC I Q+ G+ KL+ F + + D+ ++ ++F+
Sbjct: 1198 RLRRACCNPALID-QDAGVPSGKLAAFLDLVD--------------DLVRNRHRALVFSQ 1242
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L V+ + +GI + +DG+T DR+ V +FQ + + +I + AGG GL+
Sbjct: 1243 FVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQ-AGTADVFLISLRAGGTGLNL 1301
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A VV L+ +P++ QA DR HR GQ V IY +D+ +E
Sbjct: 1302 TAADYVVHLDPWWNPAVEDQASDRVHRIGQERPVTIYRLIMQDSIEE 1348
>gi|238879188|gb|EEQ42826.1| chromo domain protein 1 [Candida albicans WO-1]
Length = 1410
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 161/652 (24%), Positives = 269/652 (41%), Gaps = 122/652 (18%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F R ++ADEMGLGKT+Q +A + I A G LVV P
Sbjct: 365 FQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVP 424
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT----------RFPR--VVVISYTMLHRL 304
+W E E+W P D++ V+ N T R P+ V++ +Y + +
Sbjct: 425 AWQETFEKWAP-----DVNCVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKD 479
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + W L VDE+H ++ ++ +S E +K KV +L++GTP + ++
Sbjct: 480 KNELGAFKWQFLAVDEAHRLKNAE-SSLYEALKGF-----KVSNRLLITGTPLQNNVKEL 533
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
N L PG K+ + D +T+ Q Q +D K + ++R
Sbjct: 534 AALCNFLMPG-----KFTIDQE-IDFETIDSEQEQYIKDLQKKI----------SPFILR 577
Query: 425 RLKQHLLVQLPPKRRQIIRLLLK-------RSEIVSAKAAVGVINDSE-----------K 466
RLK+ + LP K +I+R+ L ++ I AA+ N K
Sbjct: 578 RLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIMSELK 637
Query: 467 DATNDKTPKDSDEH---DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
A+N D E D +G+ R + + K+ + LS
Sbjct: 638 KASNHPYLFDGAEDKVLDKAGSSSRENTLKGIVMSSGKMVLLEQLLS------------- 684
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++IF+ +++LD + +++ KG F R+DG R+ A+ F
Sbjct: 685 -RLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKD 743
Query: 584 IA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
A ++ AGG+G++ +A V+ + +P LQA RAHR GQ + V++Y F +KDT
Sbjct: 744 FAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDT 803
Query: 643 TDESHWQNLNKSL----RCVS------SATNG-----KYDALQEIAVEGVSYLEMSDKTD 687
+E + K + +S SA NG + L +I G + +
Sbjct: 804 VEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKFGAGTMFKENNNQ 863
Query: 688 RGSEDLTLDQVASSDQFQELMKVPESSEA-------------SDFRA-INTNDEITAKMN 733
+ E+L LD V S ++ + PE E+ +D++A + +D I +
Sbjct: 864 QKLENLNLDDVLS--HAEDHVTTPELGESNLGSEEFLKQFEVTDYKADVEWDDIIPQEEL 921
Query: 734 DKLLEESKTDHSPTETDDHHNNVSQYTGRIHLY---SCVP------GTDSRP 776
KL +E K D S+ + + S VP G DSRP
Sbjct: 922 TKLKDEEKRKADEQYLQDQIAMYSRRKAAVRKFENGSSVPSDVEDSGEDSRP 973
>gi|257094070|ref|YP_003167711.1| Non-specific serine/threonine protein kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046594|gb|ACV35782.1| Non-specific serine/threonine protein kinase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 1400
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 223/473 (47%), Gaps = 60/473 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
KLP L + P+Q +G ++ +R G CL AD+MGLGKTLQA+ + + G L
Sbjct: 931 KLPSLLQATLRPYQEDGYQWAIRLATAGMGGCL-ADDMGLGKTLQALGVLLERAAGGPAL 989
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFG--HRNNPVHLTRFPRVVVISYTMLHRLR 305
V+ P + +W E +R+ P L A I+ G R+ V V+++SYT+L +
Sbjct: 990 VIAPTSVCGNWLAEAQRFAP-TLNARIYSEAGDSERDELVSQAGPQDVLIVSYTLLLLAQ 1048
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ + W L+ DE+ ++ +KR+ +AV ++ A + + ++GTP +R D
Sbjct: 1049 ERFAGRTWHTLVADEAQAIKNAAAKRS------QAVFELTADFR--LAMTGTPVENRLAD 1100
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV-- 421
++ + PGLLG + F + + G + ++ R E +LK+ V
Sbjct: 1101 LWSIMRFANPGLLGSV-HRFNERFA---------GPIERN-----RDREAQHVLKRLVGP 1145
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR K +L LPP R ++I + + + A+ S+ DAT D P+
Sbjct: 1146 FILRRTKSEVLQDLPP-RTELILTVTPEAAEAAHYEALRREAASDIDATLDAAPEAQARF 1204
Query: 481 DDSGACCRL------GKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+ RL ++ E GI AK+ F E A+++ N +K
Sbjct: 1205 NILAQLTRLRRAACDPRLCNPEFGITGAKVQAFAEL------------ASELIAN--GHK 1250
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++F+ + L ++E + E G+ + +DG T +R V +FQ + E + +I + AG
Sbjct: 1251 ALVFSQFVDFLQVLREPLDESGVHYQYLDGATPAAERSRRVAAFQ-AGEGDLFLISLKAG 1309
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G GL+ ++A VV + +P+ QA RAHR GQ V +Y + T +E
Sbjct: 1310 GFGLNLTAADYVVITDPWWNPAAEDQAMGRAHRIGQLRPVTVYRLVTRGTVEE 1362
>gi|329954230|ref|ZP_08295324.1| helicase protein [Bacteroides clarus YIT 12056]
gi|328527936|gb|EGF54922.1| helicase protein [Bacteroides clarus YIT 12056]
Length = 562
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/504 (25%), Positives = 224/504 (44%), Gaps = 69/504 (13%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
+P LL +Q EG+ + L RC+ D+ GLGKTLQAI + LV+CPA
Sbjct: 97 VPHGLLLEPYDYQKEGIAYALSHK-RCIFGDQPGLGKTLQAIGTVT-IAKSYPCLVICPA 154
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL----TRFPRVVVISYTMLHRLRKSM 308
L+++W E ++ L+ +N T+ + + +Y L +
Sbjct: 155 ALKINWQREFKK-----FAGKQALILDDKNKNTWQRFIETKCCDIFITNYESLKKFFVLD 209
Query: 309 IEQD----------------WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352
++ D + +I+DESH +C ++++ ++ K V + + I+ L
Sbjct: 210 VKDDVRFTMKSISFDPRITLFKSVIIDESH--KC--KSTKTQQSKFVEGICKGKEFILEL 265
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP ++ D+ Q+ ++G+ + D + + + K L+E
Sbjct: 266 TGTPVVNDNTDLIQQLK-----IMGRLE--------DFGGYKTFTERFCNGPKKASNLKE 312
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL-LLKRSEIVSAKAAVGVINDSEKDATND 471
LN L T RR K +L QLP K RQ I + + R E A++ + K+A ++
Sbjct: 313 LNWRLWNTCFFRREKAKVLTQLPDKTRQYIEMDITTRLEYEKAESDLIQYLRVFKNADDE 372
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
K K R+G + K+ E+ IH VI DG
Sbjct: 373 KIAKSMRGE----VMVRMGILKAIS-ARGKIKAAAEF--IHDVI---DGG---------E 413
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+I+FA+ +V+ +++ + V + G +Q +V +FQ + + + I+ +
Sbjct: 414 KLIVFAYLKEVVMELKKMFPQA----VTVTGEDNAIRKQMSVDAFQNNPDCTLIILNYKS 469
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG GL +++ V F+E P + S QAEDRAHR GQ + VN Y F K+T DE + +
Sbjct: 470 GGTGLTLTASSRVAFIEFPWTFSDCEQAEDRAHRNGQKNNVNCYYFLGKNTIDEYMYDVI 529
Query: 652 NKSLRCVSSATNGKYDALQEIAVE 675
+ + +++ G D ++E ++
Sbjct: 530 QRK-KGIANGVTGTDDVVKENVID 552
>gi|110777198|ref|XP_624414.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Apis mellifera]
Length = 1966
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 88/492 (17%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 722 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 781
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + V G R + + + V++
Sbjct: 782 INWEREFETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRGGRASKIRSNQIKFNVLL 841
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GT
Sbjct: 842 TSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGT 895
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ + +Q + F D SK ++++L+
Sbjct: 896 PLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKLHE 940
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 941 LLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PK 992
Query: 476 DSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPV 514
+ D CC + SY+ + K +G LS
Sbjct: 993 GGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYETSALIKAAGKLVLLSKMLK 1052
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+
Sbjct: 1053 KLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAID 1102
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1103 RFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1162
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1163 IYRFVTRNSVEE 1174
>gi|380020464|ref|XP_003694103.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein Mi-2 homolog [Apis florea]
Length = 1964
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 88/492 (17%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 721 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 780
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + V G R + + + V++
Sbjct: 781 INWEREFETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRGGRASKIRSNQIKFNVLL 840
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GT
Sbjct: 841 TSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGT 894
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ + +Q + F D SK ++++L+
Sbjct: 895 PLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKLHE 939
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 940 LLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PK 991
Query: 476 DSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPV 514
+ D CC + SY+ + K +G LS
Sbjct: 992 GGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYETSALIKAAGKLVLLSKMLK 1051
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+
Sbjct: 1052 KLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAID 1101
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1102 RFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1161
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1162 IYRFVTRNSVEE 1173
>gi|126660775|ref|ZP_01731871.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
gi|126617919|gb|EAZ88692.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
Length = 1400
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 224/486 (46%), Gaps = 73/486 (15%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAAC 239
+ + E +LP + + +QLEG + R G CL AD+MGLGKT+QA+A
Sbjct: 928 QAMHEFTPQLPSTFQGELRDYQLEGFHWLARLSHWDVGACL-ADDMGLGKTIQALAAILT 986
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVIS 297
+AG L+V P + +W +E ++ P P ++FG N L +++ S
Sbjct: 987 RATAGPTLIVAPTSVCFNWIDECFKFAPTLNP----ILFGSGNRQEILDNLQPFDLLICS 1042
Query: 298 YTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
Y +L + + + E W +++DE+ ++ +KR+ +A + + + K I +
Sbjct: 1043 YGLLQQESVAAMLAEVSWQTIVLDEAQFIKNMTTKRS------QAAMKLQGQFKLIT--T 1094
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP L +++F IN PGLLG K + +++ S +
Sbjct: 1095 GTPLENHLGELWNLFRFIN---PGLLGSKKQFNDRFIAPIESD-----------SHKILH 1140
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
++L L+ Q ++RR K +L +LPP+ ++ + L E+ +A
Sbjct: 1141 QQLKRLI-QPFILRRTKTQVLSELPPRTEMLLSVELSNEEMALYEAL-----------RR 1188
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------- 523
D K S E DDSG G+ Q L A L R HP + D +
Sbjct: 1189 DSLEKLS-ESDDSG-----GQKHLQVL--AALMKLRR-CCCHPSLVLDDASLKGSKLQLF 1239
Query: 524 ----IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
++ +K ++F+ + L ++ + + I + +DG+T ++RQ V +FQ S
Sbjct: 1240 QEILEELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRVKAFQ-S 1298
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
E + +I + AGG GL+ ++A V+ L+ +P++ QA DRA+R GQ V +Y A
Sbjct: 1299 GEGDVFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQATDRAYRIGQQRPVTVYRLVA 1358
Query: 640 KDTTDE 645
KDT +E
Sbjct: 1359 KDTIEE 1364
>gi|396466336|ref|XP_003837669.1| hypothetical protein LEMA_P123770.1 [Leptosphaeria maculans JN3]
gi|312214231|emb|CBX94225.1| hypothetical protein LEMA_P123770.1 [Leptosphaeria maculans JN3]
Length = 938
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 150/547 (27%), Positives = 240/547 (43%), Gaps = 81/547 (14%)
Query: 172 RWNPCRP-EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLR-RGGRCLIAD 223
R N C + + D VVD + L K L D Q EGV+F G+R G ++AD
Sbjct: 269 RPNSCPAGKQIVDVVVDPV---LSKHLRD----HQREGVKFLYECVMGMRCEGEGAIMAD 321
Query: 224 EMGLGKTLQAIAIAACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPAD 273
EMGLGKTLQ IA+ + I L+VCPA L +W E +WL
Sbjct: 322 EMGLGKTLQTIALIWTLLKQNPIHGSSPVVNKALIVCPAGLVDNWKREFRKWLGN---ER 378
Query: 274 IHLVFGHRNNPVH---LTRFPRVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKR 329
I L H++ V + + V+++ Y ML +++ + + ++I DE H ++ +
Sbjct: 379 IGLFSCHKDRKVTDFTMGKAYNVMIVGYEMLRVVQEDLKKAGGIDIVIADEGHRLKTANN 438
Query: 330 TSEPEEVKAVLDVAA-KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
KA+L + + +R V+LSGTP + + + I+ + PGLLG+ + F +T+
Sbjct: 439 -------KAMLAIQSLSTERRVILSGTPLQNDLGEFYTAIDFVNPGLLGQ-RSAFKRTF- 489
Query: 389 DVKTVQGYQGQLFQ-DFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL 446
+ ++ Q + + KG R +EL V L MIRR L LPPK I+
Sbjct: 490 EAPIMRSRQPDATESELEKGEARWKEL-VSLTSQFMIRRTANVLAKYLPPKTEHIVFCKP 548
Query: 447 KRSE-----------IVSAKAAVG-------VINDSEKDATNDKTPKDSDEHDDSGAC-- 486
R++ I SA G +IN +K + K S ++DD+ +
Sbjct: 549 TRAQAEAYRNILTSPIFSAALGNGNSDMALQLINVLKKVCNSPSLLKSSTDNDDTPSALL 608
Query: 487 -CRLGKISYQELGIAKLSGFREWLS--IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
L I Q L + S L +H + +D K++I +++ L
Sbjct: 609 QTLLPLIPPQILNSSASSTKLRLLDSLVHRIHTTTD-----------EKIVIVSNYTTTL 657
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA--GGVGLDFSSA 601
D ++ ++ ++R+DG+T RQ V+ F S++ ++A GGVG++ A
Sbjct: 658 DMIERLLTSLSYTYLRLDGSTPAAKRQPLVNKFNTSSKSTAFAFLLSAKSGGVGINLIGA 717
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661
+V E +P+ LQA R HR GQ IY F K DE +Q + +
Sbjct: 718 SRIVLFECDWNPATDLQAMARIHREGQKLPCKIYRFLIKGGLDEKIYQRQVSKMGLAGAV 777
Query: 662 TNGKYDA 668
+ K A
Sbjct: 778 VDNKASA 784
>gi|212529714|ref|XP_002145014.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
[Talaromyces marneffei ATCC 18224]
gi|210074412|gb|EEA28499.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
[Talaromyces marneffei ATCC 18224]
Length = 900
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 140/568 (24%), Positives = 239/568 (42%), Gaps = 116/568 (20%)
Query: 179 EHLSDEVVDEMIGKL------PKSLLDVILPFQLEGVRF--GLRRG-GRCLIADEMGLGK 229
+ L +EV+DE I + P + + P QL+GV F LR+ ++ADEMGLGK
Sbjct: 34 DKLEEEVIDEDIHQYERLHNQPAGINARLKPHQLDGVSFLSWLRKNNAHGILADEMGLGK 93
Query: 230 TLQAIAIAACFISAGS-----ILVVCPAILRLSWAEELERW------------------- 265
TLQ ++ + G+ +VVCP + +W E+E W
Sbjct: 94 TLQILSFFQLIKNNGNDDRRPFIVVCPMSVLANWQMEIENWTSLKAIKWYGNYEKRKFAA 153
Query: 266 -------------LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+ F + ++ + + LT + VV SY R S +
Sbjct: 154 QMVKNQGTAGFLSILFSVVLGSNIFSTSADFDIVLTTYETVVTDSY------RFSRM-GP 206
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTPSLSRPYDIFHQ 367
W ++++DE H ++ + ++ VKR+ V+L+GTP + +++
Sbjct: 207 WEVVVLDEGHRIK-----------NFITKLSTSVKRLKTRQRVILTGTPIQNDLSEVWSL 255
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L+P + K K + G LF LE++ L +M+RRLK
Sbjct: 256 CQWLYPEIFVKETLQHWKEAFSLS--DGSIDTLF--------LEDIREFLG-VIMLRRLK 304
Query: 428 QHLLV--QLPPKRRQIIRLLLKRSE------IVSAKAAVGVINDSEKDATNDKTPKDSDE 479
Q ++P K+ I+ L L + + +++ ++ + E + + +TP S
Sbjct: 305 QSTSAGQEIPAKKEIILHLPLTQEQKALYLDVITGRSDFVKASTYENGSYSMETPPPSPS 364
Query: 480 HDDSGACCRLG-KISYQELGIAKLSGFREW--LSIHPVIAES--DGAADIDVNPR----- 529
++ KIS + G + + E + +HP++ ++ G D D R
Sbjct: 365 NESFNQSQPTSQKISEKGSGRSVTNVLMELRKICVHPLLVDTMERGNDDADAMIRELVHT 424
Query: 530 ------------------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
+ KM+IFA LD Q + I +R+DGNT R+
Sbjct: 425 SSKFIALERLLDHEVIQNNKKMLIFAGFDYALDCCQSLLHAMNISHLRLDGNTPYAMRKL 484
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
VH FQ ++ ++ +I + AGG + +SA+ +VF++ +PS+M QAE RAHR GQT A
Sbjct: 485 NVHRFQKQDKHRVFVIAMRAGGEDITLTSAEVIVFMDFDWNPSIMAQAEARAHRIGQTKA 544
Query: 632 VNIYIFCAKDTTDESHWQNLNKSLRCVS 659
V + C + T + + LN L S
Sbjct: 545 VTVVKLCTRGTVESQMLERLNNKLYLAS 572
>gi|340349785|ref|ZP_08672788.1| hypothetical protein HMPREF9419_1019 [Prevotella nigrescens ATCC
33563]
gi|339609988|gb|EGQ14849.1| hypothetical protein HMPREF9419_1019 [Prevotella nigrescens ATCC
33563]
Length = 1345
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 213/435 (48%), Gaps = 44/435 (10%)
Query: 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
G CL AD+MGLGKTLQ IA+ S G+ LVV PA + +W EL R+ P L +
Sbjct: 912 AGVCL-ADDMGLGKTLQTIALLLEQSSKGASLVVAPASVVPNWRNELRRFAP-TLNVIVL 969
Query: 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335
+R + + VVV +YT+L+ +K ++ ++W ++ +DE+H + + + +
Sbjct: 970 NQSDNRTADIDKVQAGDVVVTTYTLLNIEQKILVTREWNVVCLDEAHTI----KNANTKM 1025
Query: 336 VKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
KA + + K +R V+L+GTP LS +++F IN PGLLG A+ F + K
Sbjct: 1026 SKAAMQL--KARRKVILTGTPIQNHLSELWNLFQFIN---PGLLGSAE-QFKQ-----KF 1074
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIV 452
+Q +G D + +L L ++RR K ++ +LP K + + L +EI
Sbjct: 1075 IQPIEGN--NDKERQSQLRRLIA----PFLLRRTKGEVIKELPDKTDIQLPVELSSNEIT 1128
Query: 453 SAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ ++ + + + N T + + C L S++ + +KL F +
Sbjct: 1129 MYEMYRKMVEELVRTDKSLNVSTLAEITKLRQMACSCSLVDKSWK-VPSSKLLAFID--- 1184
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
+AES +N N+ ++F+ L+ V+ + + ++ +DG+T R+
Sbjct: 1185 ----LAES-------LNDSGNRALVFSQFTSFLEEVRYAMDNAQLPYLYLDGSTPMAKRE 1233
Query: 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630
V FQ S +I + AGG+GL+ + A VV L+ +P++ QA DRA+R GQ
Sbjct: 1234 QLVKDFQ-SGRCPFFLISLKAGGLGLNLTGANYVVHLDPWWNPAIEQQATDRAYRIGQQQ 1292
Query: 631 AVNIYIFCAKDTTDE 645
V +Y ++ T +E
Sbjct: 1293 DVTVYHLISQHTIEE 1307
>gi|443474700|ref|ZP_21064671.1| SNF2-related protein [Pseudanabaena biceps PCC 7429]
gi|443020590|gb|ELS34535.1| SNF2-related protein [Pseudanabaena biceps PCC 7429]
Length = 1444
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 229/473 (48%), Gaps = 63/473 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP +L + +Q+EG + R G CL AD+MGLGKTLQ++A+ G+ L
Sbjct: 978 QLPSTLQADLRDYQVEGFAWLARLAHWGVGACL-ADDMGLGKTLQSLALILTRAPQGATL 1036
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHR-- 303
+V P + ++W E ++ P +VFG + L +V+ SY +L +
Sbjct: 1037 IVAPTSVCMNWISEAAKFAPTLNV----IVFGSGDRQKVLDNLQPLDIVICSYGLLQQEE 1092
Query: 304 LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SL 358
+ + + + +W +++DE+ ++ +KR+ +A +++ + K I +GTP L
Sbjct: 1093 VAEKLAKVEWQTVVLDEAQAIKNTATKRS------QAAMNLQSGFKLIT--TGTPIENHL 1144
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLL 417
+++F IN PGLLG +F Y + ++ Q + + +L L+
Sbjct: 1145 GELWNLFRFIN---PGLLGSLD-NFNTNYANPIERSQDREAR-----------NQLKKLI 1189
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKT 473
Q ++RR K +L +LP + +++ L + E+ +A A+ +N++E +A
Sbjct: 1190 -QPFILRRTKNQVLQELPSRTEVTLQVELTKEELAFYEALRREAIAKLNNTEANAGQKHL 1248
Query: 474 PKDSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
++ ACC + L +KL F E L+ ++ +K
Sbjct: 1249 QVLAEIMKLRRACCNTKLVRPDIPLPSSKLQLFGEVLN--------------ELLDNKHK 1294
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
++F+ + L +++++ + I + +DG+T +DR+ V +FQ + E + +I + AG
Sbjct: 1295 ALVFSQFVDHLHLIRDYLDAQKISYQYLDGSTPAKDRKKRVEAFQ-AGEGDVFLISLKAG 1353
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK T +E
Sbjct: 1354 GTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVAKGTIEE 1406
>gi|350424653|ref|XP_003493868.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Bombus impatiens]
Length = 1965
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 88/492 (17%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 722 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 781
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + V G R + + + V++
Sbjct: 782 INWEREFETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRGGRASKIRSNQIKFNVLL 841
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GT
Sbjct: 842 TSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGT 895
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ + +Q + F D SK ++++L+
Sbjct: 896 PLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKLHE 940
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 941 LLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PK 992
Query: 476 DSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPV 514
+ D CC + SY+ + K +G LS
Sbjct: 993 GGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYETSALIKAAGKLVLLSKMLK 1052
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+
Sbjct: 1053 KLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAID 1102
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1103 RFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1162
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1163 IYRFVTRNSVEE 1174
>gi|189240851|ref|XP_001812556.1| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3
[Tribolium castaneum]
Length = 1966
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/482 (25%), Positives = 215/482 (44%), Gaps = 70/482 (14%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P +
Sbjct: 725 YQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTII 784
Query: 257 SWAEELERWLP------FCLPADIHLV-----FGHRNNPVHLTRFPRV---------VVI 296
+W E E W P + D V F N R RV ++
Sbjct: 785 NWEREFETWAPDFYVITYVGDKDSRAVIRENEFSFEENVSKSGRISRVKASSIKFNVLLT 844
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ + +WA+L+VDE+H ++ ++ + +L+ + ++ +LL+GTP
Sbjct: 845 SYELISIDATCLGSIEWAVLVVDEAHRLKSNQ-----SKFFRLLN-SYNIQYKLLLTGTP 898
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++FH +N L ++ + D+ T Q F D SK ++++L+ L
Sbjct: 899 LQNNLEELFHLLNFL-----------NSQKFNDLATFQNE----FADISKEEQVKKLHEL 943
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L M+RRLK +L +P K I+R+ L + K I +A N K
Sbjct: 944 LGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALNPKGGGQ 998
Query: 477 S----DEHDDSGACCR---LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID---- 525
S + D CC L ++ +E I G+ I +I S +
Sbjct: 999 SVSLLNIMMDLKKCCNHPYLFPVAAEEAPIGPTGGY----DIQSLIKASGKLVLLAKMLR 1054
Query: 526 -VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK- 583
+ + ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1055 ILREQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGSSRQEAIDRFNAPGAQQF 1114
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1115 VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSV 1174
Query: 644 DE 645
+E
Sbjct: 1175 EE 1176
>gi|300771567|ref|ZP_07081442.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
gi|300761556|gb|EFK58377.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
Length = 960
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 223/479 (46%), Gaps = 73/479 (15%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI-------AACFI 241
PK+ + P+Q G + + GG ++AD+MGLGKT+Q +A+ A
Sbjct: 491 PKNFKGQLRPYQKAGYNWFHFLQHYKFGG--VLADDMGLGKTIQTLALLQKQKEDAGEDG 548
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
+ +++ P L +W +E ++ P L +H + L+ F +V+ +Y ++
Sbjct: 549 QPHTSILILPTSLIYNWQKEASKFAP-KLRILLHTGTNRIKDNFSLSHFD-LVITTYGIV 606
Query: 302 HRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R + M+E+ + +I+DES +++ S KA+ + ++ K + LSGTP +
Sbjct: 607 -RSDEQMLEKFYFNYIILDESQNIKNPASKS----FKAIKSLKSRHK--LALSGTPVENS 659
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV---RLEELNVLL 417
D++ Q++ PGLLG Y +Q + Q K R ++L ++
Sbjct: 660 VSDLWAQMHFTNPGLLGTFTY--------------FQKEFVQPIEKKKDEERAKKLQSIV 705
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K ++ RR K + +LPPK QII + + ++ V ++ N T
Sbjct: 706 KPFIL-RRTKDQVATELPPKTEQIIYCEMTEDQ---SETYEKVKSEYRNALLNVNT---- 757
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD-----GAADI------DV 526
+D ++ + G+ KL L+ HP + + D G D+ V
Sbjct: 758 ---EDKAKTSQITLLQ----GLTKLRQ----LANHPKMIDDDFEGNSGKFDLVLETLESV 806
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
NK++IF+ +K L + + EKGI + +DG T ++R AV FQ + K+ +
Sbjct: 807 LHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGAT--KNRSEAVAEFQKNKNTKLFL 864
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I I AGGVGL+ A V L+ +P++ QA DR+HR GQT +V IY F KDT +E
Sbjct: 865 ISIKAGGVGLNLIEADYVFILDPWWNPAVEQQAVDRSHRIGQTRSVFIYKFITKDTVEE 923
>gi|195166785|ref|XP_002024215.1| GL22908 [Drosophila persimilis]
gi|194107570|gb|EDW29613.1| GL22908 [Drosophila persimilis]
Length = 1898
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 219/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILR 255
P+Q+EG+ R+ + ++ADEMGLGKT+Q + G LV P
Sbjct: 596 PYQIEGINWLRYSWGQAIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 655
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 656 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 715
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 716 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYSIAYK----LLLTGT 769
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 770 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 814
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N KT
Sbjct: 815 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKTGG 869
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 870 GSCSLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGLYEINSLTKAAGKLVLLSKMLRQLK 929
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG RQ A+ F + + +
Sbjct: 930 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTVRQEAIDRFNAPGAQQFVFL 989
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 990 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1048
>gi|358339541|dbj|GAA47583.1| chromodomain-helicase-DNA-binding protein 4 [Clonorchis sinensis]
Length = 1670
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 134/507 (26%), Positives = 225/507 (44%), Gaps = 98/507 (19%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEGV RF ++ADEMGLGKT+Q I+ S G LV P +
Sbjct: 517 YQLEGVNWLRFSYGNKVDTILADEMGLGKTIQTISFLYSLYKEGHSRGPFLVAAPLSTII 576
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRFPRVVVISYTMLHRLRKSM-- 308
+W E E W P D+++V G +++ H F V + RLR
Sbjct: 577 NWEREFEFWAP-----DLYVVSYVGDKDSRTVIRQHEFSFDEGAVRGGSKAMRLRSGTSV 631
Query: 309 -------------IEQ------DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
I+Q DW +L+VDE+H R S+ + A +A K
Sbjct: 632 RFHVLLTSYELISIDQALLGSIDWEVLVVDEAH--RLKNNQSKFFRILASYKIAYK---- 685
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH ++ + P + + D +QG+ + F D SK +
Sbjct: 686 LLLTGTPLQNNLEELFHLLHFMTP-----------EKFHD---MQGFLDE-FADISKEEQ 730
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKA 456
+++L+ +L Q ++RRLK +L +P K I+R +L + E +S ++
Sbjct: 731 VKKLHDMLGQH-LLRRLKADVLQNMPSKGEFIVRVELSPMQKRFYKFILTRNFEALSCRS 789
Query: 457 A------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
+ ++ D +K + P S+E RL +Y+ + K SG E +
Sbjct: 790 GGSNVSLINIMMDLKKCCNHPYLFPSASEE------APRLPNGAYEGNALRKASGKLELM 843
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
S ++ ++++IF+ KVLD +++F+ +G F RIDG + R
Sbjct: 844 S----------KMLRNLYDTKHRVLIFSQMTKVLDLLEDFLESEGYKFERIDGGITGQQR 893
Query: 570 QSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
Q A+ + + A ++ AGG+G++ ++A V+ + +P +QA RAHR GQ
Sbjct: 894 QDAIDRYNAPDSPSFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 953
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSL 655
+ V IY F + T +E Q K +
Sbjct: 954 ANKVMIYRFVTRGTVEERVTQVAKKKM 980
>gi|139438973|ref|ZP_01772433.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
25986]
gi|133775684|gb|EBA39504.1| SNF2 family N-terminal domain protein [Collinsella aerofaciens ATCC
25986]
Length = 1173
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 229/490 (46%), Gaps = 78/490 (15%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAA 238
+ + +M +P SL + +Q++G ++ L GG ++AD+MGLGKTLQ IA
Sbjct: 693 DTLGKMDFTVPVSLKATLRGYQVDGYQWLGSLEHLGLGG--ILADDMGLGKTLQMIAHIL 750
Query: 239 CFISAGS---ILVVCPAILRLSWAEELERWLPFCLPADIHLVFG---HRNNPVHLTRFPR 292
+ AG LVVCPA L +W ELER+ P D+ + G R +
Sbjct: 751 ARVEAGDAKPTLVVCPASLVYNWTAELERFAPSL---DVCAIVGAKAQRRVQIAGADEHN 807
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI--- 349
VV+ SY ++ R EQD+A +++DE+ +++ + VA KR+
Sbjct: 808 VVITSYDLMRRDIDEYAEQDFARVVLDEAQYIK-----------NPLTQVAHAAKRLPAG 856
Query: 350 --VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY-CDVKTVQGYQGQLFQDFSK 406
L+GTP +R +++ + L PGLLG ++ FAK + V+ +G
Sbjct: 857 VRFALTGTPIENRLSELWSIFDFLMPGLLG-SRESFAKRFESPVEHAEG---------DS 906
Query: 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII---------RLLLKRSEIVSAKAA 457
RL+ L ++RR+K+ ++ LP K + +L L + ++ +
Sbjct: 907 AARLQAL----VSPFVLRRVKEDVVADLPEKIEDTVMAQLTGEQRKLYLANQDRIAQQVQ 962
Query: 458 VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL--GIAKLSGFREWLSIHPVI 515
+++ +KD K ++ CC + Y++ G AKL E +H
Sbjct: 963 HREVSEFKKD----KLKVLAELTKLRQICCD-PHLHYEDYKAGSAKLDACMEL--VH--- 1012
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
GA D + +++F+ +LD + + ++++ IGF+++ G + R V
Sbjct: 1013 ----GALD-----GGHHILLFSQFTGMLDIIGKRLAKEDIGFLKLTGASSKESRAKMVAQ 1063
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
FQ + EV + +I + AGGVGL+ ++A V+ + + + QA DRAHR GQ V +Y
Sbjct: 1064 FQ-AGEVPVFLISLKAGGVGLNLTAADVVIHYDPWWNVAAQDQATDRAHRIGQQHTVTVY 1122
Query: 636 IFCAKDTTDE 645
AKDT +E
Sbjct: 1123 KLIAKDTIEE 1132
>gi|340726708|ref|XP_003401695.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein Mi-2 homolog [Bombus terrestris]
Length = 1974
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 219/492 (44%), Gaps = 88/492 (17%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 731 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 790
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + V G R + + + V++
Sbjct: 791 INWEREFETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRGGRASKIRSNQIKFNVLL 850
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GT
Sbjct: 851 TSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGT 904
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ + +Q + F D SK ++++L+
Sbjct: 905 PLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKLHE 949
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
LL M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 950 LLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PK 1001
Query: 476 DSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPV 514
+ D CC + SY+ + K +G LS
Sbjct: 1002 GGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYETSALIKAAGKLVLLSKMLK 1061
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+
Sbjct: 1062 KLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAID 1111
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1112 RFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1171
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1172 IYRFVTRNSVEE 1183
>gi|126659998|ref|ZP_01731121.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
gi|126618763|gb|EAZ89509.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
Length = 854
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 223/492 (45%), Gaps = 85/492 (17%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAAC 239
+ + E +LP + + +QLEG + R G CL AD+MGLGKT+QA+A
Sbjct: 382 QAMHEFTPQLPSTFQGELRDYQLEGFHWLARLSHWDVGACL-ADDMGLGKTIQALAAILT 440
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVIS 297
+AG L+V P + +W +E ++ P P ++FG N L +++ S
Sbjct: 441 RATAGPTLIVAPTSVCFNWIDECFKFAPTLNP----ILFGSGNRQEILDNLQPFDLLICS 496
Query: 298 YTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
Y +L + + + E W +++DE+ ++ +KR+ +A + + + K I +
Sbjct: 497 YGLLQQESVAAMLAEVSWQTIVLDEAQFIKNMTTKRS------QAAMKLQGQFKLIT--T 548
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP L +++F IN PGLLG K + +++ S +
Sbjct: 549 GTPLENHLGELWNLFRFIN---PGLLGSKKQFNDRFIAPIESD-----------SHKILH 594
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
++L L+ Q ++RR K +L +LPP+ ++ + L E+ +A
Sbjct: 595 QQLKRLI-QPFILRRTKTQVLSELPPRTEMLLSVELSNEEMALYEAL-----------RR 642
Query: 471 DKTPKDSDEHDDSGA----------------CCRLGKI-SYQELGIAKLSGFREWLSIHP 513
D K S E DDSG CC + L +KL F+E L
Sbjct: 643 DSLEKLS-ESDDSGGQKHLQVLAALMKLRRCCCHPSLVLDDASLKGSKLQLFQEILE--- 698
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
++ +K ++F+ + L ++ + + I + +DG+T ++RQ V
Sbjct: 699 -----------ELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRV 747
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+FQ S E + +I + AGG GL+ ++A V+ L+ +P++ QA DRA+R GQ V
Sbjct: 748 KAFQ-SGEGDVFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQATDRAYRIGQQRPVT 806
Query: 634 IYIFCAKDTTDE 645
+Y AKDT +E
Sbjct: 807 VYRLVAKDTIEE 818
>gi|270013510|gb|EFA09958.1| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]
Length = 1969
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/482 (25%), Positives = 215/482 (44%), Gaps = 70/482 (14%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P +
Sbjct: 728 YQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTII 787
Query: 257 SWAEELERWLP------FCLPADIHLV-----FGHRNNPVHLTRFPRV---------VVI 296
+W E E W P + D V F N R RV ++
Sbjct: 788 NWEREFETWAPDFYVITYVGDKDSRAVIRENEFSFEENVSKSGRISRVKASSIKFNVLLT 847
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ + +WA+L+VDE+H ++ ++ + +L+ + ++ +LL+GTP
Sbjct: 848 SYELISIDATCLGSIEWAVLVVDEAHRLKSNQ-----SKFFRLLN-SYNIQYKLLLTGTP 901
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++FH +N L ++ + D+ T Q F D SK ++++L+ L
Sbjct: 902 LQNNLEELFHLLNFL-----------NSQKFNDLATFQNE----FADISKEEQVKKLHEL 946
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L M+RRLK +L +P K I+R+ L + K I +A N K
Sbjct: 947 LGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALNPKGGGQ 1001
Query: 477 S----DEHDDSGACCR---LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID---- 525
S + D CC L ++ +E I G+ I +I S +
Sbjct: 1002 SVSLLNIMMDLKKCCNHPYLFPVAAEEAPIGPTGGY----DIQSLIKASGKLVLLAKMLR 1057
Query: 526 -VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK- 583
+ + ++++IF+ K+LD +++F+ +G + RIDG RQ A+ F +
Sbjct: 1058 ILREQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGSSRQEAIDRFNAPGAQQF 1117
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1118 VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSV 1177
Query: 644 DE 645
+E
Sbjct: 1178 EE 1179
>gi|409101349|ref|ZP_11221373.1| SNF2-like protein, partial [Pedobacter agri PB92]
Length = 668
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/476 (26%), Positives = 226/476 (47%), Gaps = 49/476 (10%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVR-------FGLRRGGRCLIADEMGLGKTLQAI 234
S E + E+ ++P +LL + +Q +G+ F G CL AD+MGLGKT+Q +
Sbjct: 193 STEAIREV--EVPDTLLATLRHYQKDGLNWLNFLDDFNF---GACL-ADDMGLGKTIQIL 246
Query: 235 AIAAC---FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291
A ++ + LVV PA L +W E+E++ P I +++G+ RF
Sbjct: 247 AFILSQRDKVAHNTNLVVVPASLIFNWKAEVEKFAP---SIKIKIIYGNERTKT-TERFD 302
Query: 292 R--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
R +++ SY L + + + + + +DES H++ E + KA + ++ K
Sbjct: 303 RYEIILTSYGTLLSDIRFLKDYRFNYIFLDESQHIK----NPESQRYKAARMLQSRNK-- 356
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
V+L+GTP + +D++ Q++ PGL G +K FA Y F R
Sbjct: 357 VVLTGTPIENSTFDLYGQLSFACPGLFG-SKQQFADLYSTP----------IDQFKDKRR 405
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
EEL ++ ++ RR K+ + +LP K I+ + + +A I D + +
Sbjct: 406 SEELQHKIRPFIL-RRTKEQVAKELPDKTEIILYCEMGDEQREVYEANKKEIQDFILNKS 464
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
D+ PK S S +L +I +A + + S + E I+
Sbjct: 465 EDELPKSSMHVLKS--ITQLRQICNSAALLADGKSYLQASSKIETLLEQ-----IESKAG 517
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K+++F+ + +LD +++ + ++GIGF + G T ++R+ V SFQ ++++ + +I +
Sbjct: 518 KHKILVFSQFVTMLDLIKKQLEKRGIGFAYLTGQT--KNREEVVQSFQQNDDIPVFLISL 575
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ + A V ++ +P++ QA DRA+R GQ V DT +E
Sbjct: 576 KAGGTGLNLTQADYVYLVDPWWNPAVENQAIDRAYRIGQHKNVMAVRLICPDTIEE 631
>gi|186687055|ref|YP_001870198.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
gi|186469358|gb|ACC85157.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 233/489 (47%), Gaps = 60/489 (12%)
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLG 228
W R EHL + V + +LP +L + +Q+EG + R G CL AD+MGLG
Sbjct: 921 WKTHR-EHLHE--VKNLQPELPSTLQAELRDYQMEGFCWLARLAHWGVGACL-ADQMGLG 976
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT 288
KTLQA+A+ G L++ P + ++W E +++ P I +R +
Sbjct: 977 KTLQALAVILRNAHEGPTLIIAPTSVCMNWVSEAQKFAPTL--NIIQFSGANRQKLLDGL 1034
Query: 289 RFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAA 344
+ ++V SY +L + + + + W +++DE+ ++ +KR+ +A +++ +
Sbjct: 1035 QPLDMLVCSYGLLQQEEVAQMLSVVHWQTIVLDEAQAIKNMTTKRS------QAAMNLKS 1088
Query: 345 KVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
K +L +GTP L +++F IN PGLLG + F + + ++ YQ +L
Sbjct: 1089 NFK--LLTTGTPIENHLGELWNLFRFIN---PGLLGSFE-SFNQRFA--VPIEKYQDKLA 1140
Query: 402 QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----A 457
++ K L Q ++RR K +L +LP + ++ + L R E +A A
Sbjct: 1141 RNKLKK---------LIQPFLLRRTKNQVLEELPSRTEILLHVELSREEKAFYEALRRQA 1191
Query: 458 VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE-LGIAKLSGFREWLSIHPVIA 516
+ + +S+ DA ++ ACC + L +KL F E L
Sbjct: 1192 ISKLTESDADAGKKHLQVLAEIMKLRRACCNPSLVMPDTVLPSSKLQLFGEVLG------ 1245
Query: 517 ESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
++ +K ++F+ + L +++++ ++GI + +DG+T +R+ V +F
Sbjct: 1246 --------ELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAF 1297
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
Q + + +I + AGG GL+ ++A V+ + +P++ QA DRAHR GQ V IY
Sbjct: 1298 Q-AGSGDVFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYR 1356
Query: 637 FCAKDTTDE 645
AKDT +E
Sbjct: 1357 LVAKDTIEE 1365
>gi|407396862|gb|EKF27569.1| transcription activator, putative [Trypanosoma cruzi marinkellei]
Length = 1113
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/506 (26%), Positives = 223/506 (44%), Gaps = 91/506 (17%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAA----CFISAGSI 246
P + + P+Q+EGV + L R ++ADEMGLGKTLQ IA A + G
Sbjct: 161 PSYIRGKLRPYQIEGVNWLLGLFSRNINGILADEMGLGKTLQTIATLAYLKFTYGLPGPH 220
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W EL++W P H + R + HL + +VV ++ M
Sbjct: 221 LVVCPKSVMGNWYRELKQWCPALNAFKFHGIGEIRPQLIKSHLQPHDKLKYDIVVTTFEM 280
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + +W LIVDE+H ++ +E V LD R+++ +GTP +
Sbjct: 281 VIEELPTFKRINWQYLIVDEAHKLK-----NEEGRVHTALDSLNTNHRLII-TGTPLQNN 334
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++ ++ L P L A + + + D + Q QD + + ++ L
Sbjct: 335 LKELWALLHFLAPRLFDNA--ESFEEWFDTASGQ-------QDSNAMSNMHKILAPL--- 382
Query: 421 VMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAAVG-------- 459
MIRR+K + +PPK R+ + +L K +E ++ KA+ G
Sbjct: 383 -MIRRVKSEVSTGIPPKKEIYVACKLTKTQRKWYMHVLAKDAEALN-KASGGSMSSLTNI 440
Query: 460 ------VINDSEK-DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLS 510
VIN D + P +DE SG L K+ Y +L +E
Sbjct: 441 MMNLRKVINHPYMMDGGEEGPPFITDERIVKHSGKMMILDKLLY------RLRREKE--- 491
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
+K++IF+ +LD ++++ +G RIDGNT DR
Sbjct: 492 ------------------EKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDRD 533
Query: 571 SAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
+ + +F N + I ++ AGG+G++ +A +VV + +P + LQA+DRAHR GQ
Sbjct: 534 AQMAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVIYDSDWNPQMDLQAQDRAHRIGQK 593
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSL 655
V +Y F + T +E ++ K L
Sbjct: 594 RVVRVYRFITEGTVEEKIYRRALKKL 619
>gi|68468949|ref|XP_721533.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
gi|68469498|ref|XP_721262.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
gi|46443171|gb|EAL02455.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
gi|46443453|gb|EAL02735.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
Length = 1410
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 161/652 (24%), Positives = 269/652 (41%), Gaps = 122/652 (18%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F R ++ADEMGLGKT+Q +A + I A G LVV P
Sbjct: 365 FQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVP 424
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT----------RFPR--VVVISYTMLHRL 304
+W E E+W P D++ V+ N T R P+ V++ +Y + +
Sbjct: 425 AWQETFEKWAP-----DVNCVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKD 479
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + W L VDE+H ++ ++ +S E +K KV +L++GTP + ++
Sbjct: 480 KNELGAFKWQFLAVDEAHRLKNAE-SSLYEALKGF-----KVSNRLLITGTPLQNNVKEL 533
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
N L PG K+ + D +T+ Q Q +D K + ++R
Sbjct: 534 AALCNFLMPG-----KFTIDQE-IDFETIDSEQEQYIKDLQKKI----------SPFILR 577
Query: 425 RLKQHLLVQLPPKRRQIIRLLLK-------RSEIVSAKAAVGVINDSE-----------K 466
RLK+ + LP K +I+R+ L ++ I AA+ N K
Sbjct: 578 RLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIMSELK 637
Query: 467 DATNDKTPKDSDEH---DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
A+N D E D +G+ R + + K+ + LS
Sbjct: 638 KASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLS------------- 684
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++IF+ +++LD + +++ KG F R+DG R+ A+ F
Sbjct: 685 -RLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKD 743
Query: 584 IA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
A ++ AGG+G++ +A V+ + +P LQA RAHR GQ + V++Y F +KDT
Sbjct: 744 FAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDT 803
Query: 643 TDESHWQNLNKSL----RCVS------SATNG-----KYDALQEIAVEGVSYLEMSDKTD 687
+E + K + +S SA NG + L +I G + +
Sbjct: 804 VEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKFGAGTMFKENNNQ 863
Query: 688 RGSEDLTLDQVASSDQFQELMKVPESSEA-------------SDFRA-INTNDEITAKMN 733
+ E+L LD V S ++ + PE E+ +D++A + +D I +
Sbjct: 864 QKLENLNLDDVLS--HAEDHVTTPELGESNLGSEEFLKQFEVTDYKADVEWDDIIPQEEL 921
Query: 734 DKLLEESKTDHSPTETDDHHNNVSQYTGRIHLY---SCVP------GTDSRP 776
KL +E K D S+ + + S VP G DSRP
Sbjct: 922 TKLKDEEKRKADEQYLQDQIAMYSRRKAAVRKFENGSSVPSDVEDSGEDSRP 973
>gi|195379440|ref|XP_002048487.1| GJ13998 [Drosophila virilis]
gi|194155645|gb|EDW70829.1| GJ13998 [Drosophila virilis]
Length = 2012
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 219/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILR 255
P+Q+EG+ R+ + ++ADEMGLGKT+Q + G LV P
Sbjct: 730 PYQIEGINWLRYSWGQSIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 789
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L D + G + + + T++ V++
Sbjct: 790 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELTFDEGAIRGTKVSRLRTTQYKFNVLL 849
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ S + +L+ A + +LL+GT
Sbjct: 850 TSYELISMDAPCLGSIDWAVLVVDEAHRLK-----SNQSKFFRILNSYA-IAYKLLLTGT 903
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 904 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 948
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 949 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 1003
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 1004 GSCSLINIMMDLKKCCNHPYLFPSAAEEAPTSAGGIYEINSLTKAAGKLVLLSKMLKQLK 1063
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG+ RQ A+ F + + +
Sbjct: 1064 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGSITGTVRQEAIDRFNAPGAQQFVFL 1123
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1182
>gi|54309827|ref|YP_130847.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
gi|46914265|emb|CAG21045.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
Length = 1298
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 205/440 (46%), Gaps = 60/440 (13%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKTLQA+ + F + G+ LVV P + L+W +E R+ P D+
Sbjct: 870 GACL-ADDMGLGKTLQALTLIRHFGAQGASLVVAPKSVLLNWQQEALRFAPELTIIDVES 928
Query: 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
R + +V++SY +L RL ++ E+ W I+DE+ ++ P
Sbjct: 929 A-SDRTAAIEQADANSIVLLSYGLLSRLETTLHEKQWQCAILDEAQQIK------NPNAK 981
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
++ + + K LSGTP + +++ + L PGLLG ++ F K Y + +
Sbjct: 982 RSKIAFGLQAKCRFTLSGTPIENHLLELWSLFSFLNPGLLG-SRQQFKKKYGNAANSE-- 1038
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE------ 450
+D + L L+ +M RRLKQ +L +LP K + L ++E
Sbjct: 1039 -----EDMLR------LRTLVSPFIM-RRLKQKVLTELPSKTEITHTIELSKTERTAYEA 1086
Query: 451 -----IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
+ AK+ G++ E A + + CC ++ + E+ S
Sbjct: 1087 IRKESVAVAKSGKGMV---EVLACLTRLRQ---------VCCD-SRLVFSEMDQPS-SKL 1132
Query: 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
E ++ V +G +++++F+ + +L + + GI + +DG +
Sbjct: 1133 NE--ALQLVKEAREG---------QHRILVFSQFVTLLKMFADQLEGDGINYSYLDGKSS 1181
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
R R+ A+ +F S + ++ +I + AGG GL+ + A V+ L+ +P++ QA DRA+R
Sbjct: 1182 SRQRKQAIDAFT-SGKKEVFLISLKAGGTGLNLTEADTVIHLDPWWNPAVEDQASDRAYR 1240
Query: 626 RGQTSAVNIYIFCAKDTTDE 645
GQT V +Y A +T +E
Sbjct: 1241 MGQTKPVTVYRLVATNTIEE 1260
>gi|32475836|ref|NP_868830.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
gi|32446379|emb|CAD76207.1| probable swi/snf family helicase 2 [Rhodopirellula baltica SH 1]
Length = 1386
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/485 (25%), Positives = 231/485 (47%), Gaps = 74/485 (15%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAAC 239
E D + KLPK+L + +Q++G ++ R G CL AD+MGLGKTLQ +A+
Sbjct: 917 ESADRVRPKLPKTLNADLRDYQVDGFKWMSRLAHLGAGACL-ADDMGLGKTLQCLAVLLN 975
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVIS 297
+G LVV P + +W E+ R+ P P ++F + + + +++ S
Sbjct: 976 RGKSGPALVVAPTSVAANWVSEIARFAPSLRP----ILFSEADRETVIESLGKRDLLICS 1031
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
Y +L + + + W L++DE+ ++ ++ + +A + + A + V+L+GTP
Sbjct: 1032 YGLLANEAEKLQSRRWQTLVLDEAQAIK----NADTKRSEAAMGLEADFR--VVLTGTPM 1085
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L +++F IN PGLLG + + +Q + + R ++
Sbjct: 1086 ENHLGELWNLFQFIN---PGLLGSS--------------ESFQERFAIPIERDHR-RDVQ 1127
Query: 415 VLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
LKQ + ++RR K +L +LPP+ + + L E +A + A +
Sbjct: 1128 RQLKQLIAPFILRRTKSQVLDELPPRTEITVPIELGEDEAAMYEAM-------RRKALQN 1180
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG---AADI---- 524
+DSD DD ++ +A+L R + HP + + D AA +
Sbjct: 1181 L--EDSD--DDRPVHIKI---------LAELMRLRRF-CCHPDLVDPDAGLKAAKLERFT 1226
Query: 525 ----DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
D+ +K+++F+ + L +++ + E+ I + +DG+T + R+++V +FQ
Sbjct: 1227 DTVTDLIEGGHKVLVFSQFVGHLHLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQ-DG 1285
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
E + +I + AGGVGL+ ++A V+ ++ +P++ QA DRAHR GQ V +Y F
Sbjct: 1286 EGDVFLISLKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDRAHRMGQQRPVTVYRFITT 1345
Query: 641 DTTDE 645
T +E
Sbjct: 1346 GTIEE 1350
>gi|256052547|ref|XP_002569826.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
gi|353229870|emb|CCD76041.1| putative chromodomain helicase DNA binding protein [Schistosoma
mansoni]
Length = 1966
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 129/509 (25%), Positives = 233/509 (45%), Gaps = 102/509 (20%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILRL 256
+QLEGV RF ++ADEMGLGKT+Q IA G LV P +
Sbjct: 797 YQLEGVNWLRFSFGNKIDTILADEMGLGKTIQTIAFLYSLYKEGHCRGPFLVAAPLSTII 856
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPVHL--------------------------T 288
+W E E W P D+++V G +++ +
Sbjct: 857 NWEREFEFWAP-----DLYVVSYIGDKDSRTVIREHEFSFDEGAVRGGAKAMKMRTGTSV 911
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
RF V++ SY ++ + + DW +L+VDE+H ++ ++ + +L K+
Sbjct: 912 RF-HVLLTSYELISIDQALLGSIDWEVLVVDEAHRLKNNQ-----SKFFRIL-TTYKIGY 964
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
+LL+GTP + ++FH ++ + P K++ +QG+ + F D SK
Sbjct: 965 KLLLTGTPLQNNLEELFHLLHFMTP-----EKFN---------DMQGFLDE-FADISKEE 1009
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAK 455
++++L+ +L Q ++RRLK +L +P K I+R +L + E +S +
Sbjct: 1010 QVKKLHDMLGQH-LLRRLKADVLQDMPSKGEFIVRVELSPMQKRYYKFILTRNFEALSCR 1068
Query: 456 AA------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
+ + ++ D +K + P ++E R+ +Y+ +G+ K SG E
Sbjct: 1069 SGGSQVSLINIMMDLKKCCNHPFLFPSAAEE------AQRMPNGAYEGVGLRKGSGKLEL 1122
Query: 509 LS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
+S + + E+ ++++IF+ K+LD +++F+ +G F RIDG +
Sbjct: 1123 MSKMLRKLYET-----------KHRVLIFSQMTKMLDLLEDFLDSEGYKFERIDGAVTGQ 1171
Query: 568 DRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
RQ A+ F + + A ++ AGG+G++ +SA V+ + +P +QA RAHR
Sbjct: 1172 LRQDAIDRFNAPDSLSFAFLLSTRAGGLGINLASADTVIIYDSDWNPHNDIQAFSRAHRI 1231
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
GQ++ V IY F + T +E Q K +
Sbjct: 1232 GQSNKVMIYRFVTRGTVEERVTQVAKKKM 1260
>gi|198466497|ref|XP_002135204.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
gi|198150627|gb|EDY73831.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
Length = 2036
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 219/479 (45%), Gaps = 62/479 (12%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILR 255
P+Q+EG+ R+ + ++ADEMGLGKT+Q + G LV P
Sbjct: 738 PYQIEGINWLRYSWGQAIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 797
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 798 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 857
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 858 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYSIAYK----LLLTGT 911
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 912 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 956
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N KT
Sbjct: 957 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKTGG 1011
Query: 476 DS----DEHDDSGACCRLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVN 527
S + D CC + S E G E S+ + + + +
Sbjct: 1012 GSCSLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGLYEINSLTKAAGKLVLLSKMLRQLK 1071
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++++IF+ K+LD +++F+ + + RIDG RQ A+ F + + +
Sbjct: 1072 SQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTVRQEAIDRFNAPGAQQFVFL 1131
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++ +E
Sbjct: 1132 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1190
>gi|145353082|ref|XP_001420858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581093|gb|ABO99151.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 522
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 130/504 (25%), Positives = 224/504 (44%), Gaps = 58/504 (11%)
Query: 200 VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA 252
V+ +QLEG+R+ + +G C++ADEMGLGKTLQ+I+ AC + G LVVCP
Sbjct: 5 VLREYQLEGLRWNVGMYDQGCSCILADEMGLGKTLQSISFLACIKEMRHANGPHLVVCPL 64
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-------TRFPRVVVISYTM----- 300
+ SW +EL++W P +H G N V L T V V +Y M
Sbjct: 65 SVLSSWMDELQKWAPSFRVVRLH--SGDENERVRLRKEVVPNTESYDVAVTTYEMACNPA 122
Query: 301 --LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR--IVLLSGTP 356
+ +K M W LI+DE H V+ E A V ++KR +LL+GTP
Sbjct: 123 FNVTLTQKVM----WRCLILDEGHRVK--------NEETAAHQVLKRIKRQHTLLLTGTP 170
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++++ ++ L P + ++ F K + + L LE+ + L
Sbjct: 171 IQNNLHELYAILSFLHPDVFTSSE-PFDKAFNLNTSEHKVDSNL---------LEKAHFL 220
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV---GVINDSEKDATNDKT 473
++ ++ RR+K + V LPPK I L ++ + + S + AT +
Sbjct: 221 MRPFIL-RRVKGEVEVSLPPKTETKIMCPLSEAQTFWYRRLLLREATALQSLEKATKGEG 279
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNP 528
D+ + +S +L K + + I +I+ S A +D +
Sbjct: 280 GADNFQKLNS-LLMQLRKCCNHPFLFTGTDVPEDGVPIEDLISASGKLAVLDRMLQKLKE 338
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-II 587
+++++F+ +LD +Q+F++ +G + R+DG+T R + +F + A ++
Sbjct: 339 GGHRVVLFSQFTSMLDILQDFLTLRGYTYARLDGSTNRVQRSIDIAAFNRPDSPMFAFLL 398
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
AGG+G++ +A + + +P + LQA R HR GQ V+IY T +E
Sbjct: 399 STRAGGLGVNLQTADTCILFDSDWNPQVDLQAMARVHRIGQKKMVHIYRLVTAGTVEERM 458
Query: 648 WQNLNKSLRCVSSATNGKYDALQE 671
Q K L + G A ++
Sbjct: 459 TQRAEKKLFLDQMVSRGSTKAAEQ 482
>gi|392311297|ref|ZP_10273831.1| SNF2-like protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1398
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/522 (24%), Positives = 237/522 (45%), Gaps = 70/522 (13%)
Query: 161 VEKLSHSIDTGRWNPCRPEHLSDEVV----------DEMIGKL----------PKSLLDV 200
++KL+ + D G+++P H+S DE K+ P +L
Sbjct: 871 LDKLNEATDGGQFHPLASMHVSQATTGMRMKTLHAWDEQHNKMHQANSLTPSVPSTLQAT 930
Query: 201 ILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
+ +Q++G + R G CL AD+MGLGKTLQA+A+ G LV+ P +
Sbjct: 931 LRDYQIDGFDWASRLAHWGAGACL-ADDMGLGKTLQALAVLLDRAKDGPSLVIAPTSVCF 989
Query: 257 SWAEELERWLP---FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDW 313
+W +E ++ P L AD+ R ++ + VVISY +L R + + W
Sbjct: 990 NWLQEACKFAPSLNMILLADLK-SSAERATMLNALQPFDCVVISYGLLQRESELLQALTW 1048
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINM 370
++ DE+ ++ P +++ A K ++ +GTP +LS + +F +N
Sbjct: 1049 RTIVADEAQALK------NPLAKRSIAACALKGDFKLITTGTPIENNLSELWSLFRFVN- 1101
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
PGLLG K A+ ++ ++ +K R + N++ Q ++RR+K +
Sbjct: 1102 --PGLLGNLKRFSARFSTPIEAIKDDPIA-----AKKARTKLKNLI--QPFILRRMKHQV 1152
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD------SDEHDDSG 484
L +LP + I++ L E+ +A D+ +++ P ++
Sbjct: 1153 LTELPARTDINIKVQLSDEEMALYEALRQSAIDNLTQSSSQDQPGAQRIKMLAELIKLRQ 1212
Query: 485 ACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
ACC + + + AKL+ + L ++ ++K +IF+ + L
Sbjct: 1213 ACCNPALVLTDNTIPSAKLTALDKLLD--------------ELQENNHKALIFSQFVGHL 1258
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+++ + +G+ + +DG+T + RQ V++FQ + +I + AGG GL+ ++A
Sbjct: 1259 QLIKQHLDARGVNYQYLDGSTPNKQRQLRVNAFQQGGG-DVFLISLKAGGSGLNLTAADY 1317
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ ++ +P++ QA DRAHR GQ V IY A DT +E
Sbjct: 1318 VIHMDPWWNPAVEEQASDRAHRMGQQRPVTIYRLIASDTIEE 1359
>gi|373458883|ref|ZP_09550650.1| SNF2-related protein [Caldithrix abyssi DSM 13497]
gi|371720547|gb|EHO42318.1| SNF2-related protein [Caldithrix abyssi DSM 13497]
Length = 1050
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 221/471 (46%), Gaps = 59/471 (12%)
Query: 193 LPKSLLDVILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI--- 246
LP+ L + +Q G + F G ++AD+MGLGKT+Q +A+ I
Sbjct: 584 LPEGLKGTLRDYQKAGYDWMNFLKEYGFGGILADDMGLGKTIQTLALLLKEIKENPKKPN 643
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
LVV P L +W +E++R+ P + +H + L +FP +++ +Y + R
Sbjct: 644 LVVVPTSLIFNWMQEIQRFTP-QIKYLVHYGTRRTRDIRRLKKFP-LILTTYGHVRRDII 701
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ E ++ I+DES +++ E KAV + A+ + + L+GTP + D++
Sbjct: 702 LLKEIEFNYAILDESQNIK----NPLSETSKAVRLLNARNR--LALTGTPVENNTMDLWA 755
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
Q + PGLLG + F +T+ ++ ++ Q V++ L ++RR
Sbjct: 756 QFAFINPGLLGDLNF-FKETF--MRPIEKEQN---------VQVASALRRLIFPFILRRT 803
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ + +LPPK II + D ++ N D
Sbjct: 804 KEDVAKELPPKVENII---------------FSPMTDDQQKLYNKWRTAYKDSILAEIES 848
Query: 487 CRLGKISYQEL-GIAKLSGFREWLSIHPVIAE---SDGAADID--------VNPRSNKMI 534
L K ++ L G+ +L ++ HP + E ++GA D + +K++
Sbjct: 849 QGLNKSKFKVLEGLTRLRQ----IACHPGLVEPGFNNGAGKFDALMEMIAEIVSEKHKVL 904
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
IF+ +K+L ++ + E GI + +DG T +DRQ+ V FQ + V+I +I + AGG
Sbjct: 905 IFSQFVKMLHIIRSKLDEDGISYAYLDGQT--KDRQAQVELFQNNENVRIFLISLKAGGT 962
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ + +P++ +QA DRA+R GQT V Y +KD+ +E
Sbjct: 963 GLNLTAADYVIHYDPWWNPAVEMQATDRAYRIGQTKKVFAYKLISKDSVEE 1013
>gi|432860089|ref|XP_004069385.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Oryzias
latipes]
Length = 2111
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 124/478 (25%), Positives = 208/478 (43%), Gaps = 77/478 (16%)
Query: 200 VILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA 252
+ P+QLEG+ RF +G ++ADEMGLGKT+Q I S G LV P
Sbjct: 859 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPL 918
Query: 253 ILRLSWAEELERWLPFCLPADIHLVF------GHRNNPVHLTRFPRVVVISYTMLHRLRK 306
++W E E W P D ++V ++ P+ V++ SY ++ +
Sbjct: 919 STIINWEREFEMWAP-----DFYVVTYTGDKDSRKDTPIKF----HVLLTSYELITIDQA 969
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ WA L+VDE+H ++ ++ + +L+ K+ +LL+GTP + ++FH
Sbjct: 970 ILGSISWACLVVDEAHRLKNNQ-----SKFFRILN-GYKIYYKLLLTGTPLQNNLEELFH 1023
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+N L P ++G+ + F D SK ++++L+ LL M+RRL
Sbjct: 1024 LLNFLTPDRF--------------NNLEGFLEE-FADISKEDQIKKLHDLLGPH-MLRRL 1067
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS----DEHDD 482
K + +P K I+R+ L + K I +A N K + + D
Sbjct: 1068 KADVFKNMPAKTELIVRVELSPMQ----KKYYKFILTRNFEALNSKGGGNQVSLLNIMMD 1123
Query: 483 SGACCR--------------LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
CC L SY + K SG L + +G
Sbjct: 1124 LKKCCNHPYLFPVAAVEAPVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEG-------- 1175
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-II 587
++++IF+ K+LD +++F+ +G + RIDG RQ A+ F + ++
Sbjct: 1176 --HRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL 1233
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG+G++ +SA V+ + +P +QA RAHR GQ V IY F + + +E
Sbjct: 1234 STRAGGLGINLASADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRGSVEE 1291
>gi|325270384|ref|ZP_08136989.1| helicase [Prevotella multiformis DSM 16608]
gi|324987328|gb|EGC19306.1| helicase [Prevotella multiformis DSM 16608]
Length = 1326
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 220/463 (47%), Gaps = 50/463 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P++L + +Q EG + + G CL AD+MGLGKTLQ I + G+ LV
Sbjct: 865 VPRTLQVQLRDYQEEGFEWMSKLTAWGAGVCL-ADDMGLGKTLQTITLLLEQQEKGASLV 923
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL R+ P L + G R + + V++I+Y +L+ + +
Sbjct: 924 VAPASVVPNWRNELRRFAP-TLQVTVLNQSGDRPGDIKAAKSGEVIIITYALLNIQQDDL 982
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
+++W ++ +DE+H ++ + + KA + + A+ R V+L+GTP L+ +++F
Sbjct: 983 TDREWNVVCLDEAHTIK----NANTKMSKAAMKLQAQ--RKVILTGTPIQNHLAELWNLF 1036
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F K + + ++G D S+ +L +L ++RR
Sbjct: 1037 QFIN---PGLLGSAE-QFKKKF--ILPIEGDN-----DKSRQSQLRKL----ISPFLLRR 1081
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN--DKTPKDSDEHDDS 483
K ++ +LP K IRL ++ S A V EK N DK ++
Sbjct: 1082 TKSEVIDELPAKNE--IRLPVELSSDEMAMYEVRRRETEEKVRANAADKVSTLAEITRLR 1139
Query: 484 GACCRLGKISYQELGIAKLSGFREW-LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
C + R+W L V+A D A + N N+ ++F+
Sbjct: 1140 QMACSCSLVD------------RKWKLPSSKVLAFIDLAESL--NDSGNRALVFSQFTSF 1185
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
LD V+ + + + ++ +DG+T R+ V FQ + +I + AGG+GL+ + A
Sbjct: 1186 LDEVRRAMDKARLPYLYLDGSTPMAQREKLVQDFQ-TGRCPFFLISLKAGGLGLNLTGAN 1244
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1245 YVIHLDPWWNPAIEQQATDRAYRIGQKQEVTVYHLISQHTIEE 1287
>gi|209877571|ref|XP_002140227.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
muris RN66]
gi|209555833|gb|EEA05878.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
muris RN66]
Length = 1100
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 128/501 (25%), Positives = 229/501 (45%), Gaps = 78/501 (15%)
Query: 203 PFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILR 255
P+QLEG+ + + G ++ADEMGLGKT Q I++ A +I L++ P
Sbjct: 172 PYQLEGLNWLIYLYESGLNGILADEMGLGKTFQTISLLAYLKEYRNIDGVHLILSPKSTL 231
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVH--LT-----RFPRVVVISYTMLHRLRKSM 308
+W E+ R+ P H RN + LT + V+V SY M R +
Sbjct: 232 GNWINEINRFCPCIKTLKFHGNSEERNILMRKILTNEDNNKDYNVIVTSYEMCLREKSWF 291
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+++ + +I+DE+H R +S+ ++ V ++ K + +L++GTP + +++ +
Sbjct: 292 MKKRFHSVIIDEAH--RIKNESSKLSQI--VRNLETKFR--LLITGTPLQNSLKELWSLL 345
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK--QTVMIRRL 426
N L+P + + D +T D++++ L Q+ + E + L K + M+RR+
Sbjct: 346 NFLFPEIFSSS--DEFETLFDLQSINDNFSDLSQEQKEKKSFEIIERLHKILRPFMLRRI 403
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD--EHDDSG 484
K + + +PPK+ ++ + L + ++ D K+ D + DSG
Sbjct: 404 KSEVEIDIPPKKEILLYVPL---------------TNMQRTLYRDILSKNIDALQERDSG 448
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP-------RSNKMI--- 534
RL ++ Q + K HP + DG D + +P S KMI
Sbjct: 449 GRVRLINLAMQ---LRKACN-------HPYLF--DGYEDKNEDPFGEHVIENSGKMIMLD 496
Query: 535 --------------IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
IF+ ++LD +++F + + RIDGNT DR + + F N
Sbjct: 497 RLTKKLLQNGSRILIFSQMARILDILEDFCYMRKYKYCRIDGNTSTEDRDTQISDFNKPN 556
Query: 581 -EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
++ I ++ AGG+G++ ++A V+ + +P + LQA DRAHR GQ V IY
Sbjct: 557 SDISIFLLSTRAGGLGVNLATADIVIIYDSDWNPQVDLQAMDRAHRIGQKKPVYIYRLFH 616
Query: 640 KDTTDESHWQNLNKSLRCVSS 660
++T +E + N L+ S+
Sbjct: 617 ENTIEEKILERANLKLQLESA 637
>gi|186686080|ref|YP_001869276.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
gi|186468532|gb|ACC84333.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 227/470 (48%), Gaps = 57/470 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP +L + +Q+EG + R G CL AD+MGLGKTLQA+A+ G L
Sbjct: 937 ELPSTLQAELRDYQMEGFCWLARLAHWGVGACL-ADQMGLGKTLQALAVILRNAHEGPTL 995
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
++ P + ++W E +++ P I +R + + ++V SY +L + +
Sbjct: 996 IIAPTSVCMNWVSEAQKFAPTL--NIIQFSGANRQKLLDGLQPLDMLVCSYGLLQQEEVA 1053
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + + W +++DE+ ++ +KR+ +A +++ + K +L +GTP L
Sbjct: 1054 QMLSQIQWQTIVLDEAQAIKNMTTKRS------QAAMNLKSNFK--LLTTGTPIENHLGE 1105
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + ++ YQ +L ++ K L Q
Sbjct: 1106 LWNLFRFIN---PGLLGSFE-SFNQRFA--TPIEKYQDKLARNKLKK---------LIQP 1150
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LP + ++ + L + E +A A+ + +S+ +A
Sbjct: 1151 FLLRRTKNQVLEELPSRTEILLHVELSQEEKAFYEALRRQAISKLTESDAEAGKKHLQVL 1210
Query: 477 SDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC + EL +KL F E L ++ +K ++
Sbjct: 1211 AEIMKLRRACCNPSLVMPGTELPSSKLQLFGEVLG--------------ELLENRHKALV 1256
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L +++++ ++GI + +DG+T +R+ V +FQ + + +I + AGG G
Sbjct: 1257 FSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQ-AGSGDVFLISLKAGGTG 1315
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ ++A V+ + +P++ QA DRAHR GQ V IY AKDT +E
Sbjct: 1316 LNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEE 1365
>gi|168035589|ref|XP_001770292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162678509|gb|EDQ64967.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 1031
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 119/474 (25%), Positives = 213/474 (44%), Gaps = 75/474 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAA-----CFISAGSILVVCPAILR 255
+QL G+ + +R G ++ADEMGLGKTLQ I++ A C IS G +VV P
Sbjct: 170 YQLAGLNWLIRLYENGVNGILADEMGLGKTLQTISLLAYLHEYCGIS-GPHMVVAPKSTL 228
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRN---NPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W E+ R+ P H RN + + + + V S+ M + R ++ +
Sbjct: 229 GNWMNEIRRFCPVLRAFKFHGNQEERNYQRDELLVAGKFDICVTSFEMAIKERTALRKFS 288
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI------VLLSGTPSLSRPYDIFH 366
W +I+DE+H ++ + AK R+ +L++GTP + ++++
Sbjct: 289 WRYIIIDEAHRIKNES------------SILAKTMRLFSTNYRLLITGTPLQNNLHELWA 336
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+N L P + + A+T+ + + G Q ++ Q K +R ++R
Sbjct: 337 LLNFLLPEI-----FSSAETFDEWFQISGENDQHEVVQQLHKVLR----------PFLLR 381
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
RLK + LPPK+ I+++ + + +A + KD D + G
Sbjct: 382 RLKSDVERGLPPKKETILKVGMSTLQKQYYRALL---------------QKDMDAINTGG 426
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPV------IAESDG------AADIDVNPRSNK 532
RL I+ Q E P + E+ G + R ++
Sbjct: 427 ERKRLLNIAMQLRKCCNHPYLFEGAEPGPPYTTGEHLVETAGKMVLLDKLLPKLKQRQSR 486
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITA 591
++IF+ ++LD ++++ + + RIDGNT DR+S++ F N K ++ A
Sbjct: 487 VLIFSQMTRLLDILEDYCQFRSYQYCRIDGNTSGDDRESSIDQFNAPNSEKFCFLLSTRA 546
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 547 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEFTIEE 600
>gi|427721070|ref|YP_007069064.1| SNF2-like protein [Calothrix sp. PCC 7507]
gi|427353506|gb|AFY36230.1| SNF2-related protein [Calothrix sp. PCC 7507]
Length = 1416
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 130/487 (26%), Positives = 234/487 (48%), Gaps = 71/487 (14%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
V + +LP + + +Q+EG + R G CL AD+MGLGKT+QA+A+
Sbjct: 937 VQNLQPELPSTFQAELRDYQMEGFSWLARLAHWGVGACL-ADQMGLGKTVQALAVILRNA 995
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV-FG----------HRNNPVHLTRF 290
+G L+V P + ++W E +R+ P ++++ FG R ++ +
Sbjct: 996 QSGPTLIVAPTSVCMNWVSEAQRFAP-----TLNIIQFGGSVREASPTASRQQLLNNLQP 1050
Query: 291 PRVVVISYTMLHRLRKS-MIEQ-DWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKV 346
++V SY +L + S M+ Q W +++DE+ ++ +KR+ +A +++
Sbjct: 1051 FDMLVCSYGLLQQEEVSQMLSQVQWQTIVLDEAQAIKNMTTKRS------QAAMNLKGSF 1104
Query: 347 KRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403
K I +GTP L +++F IN PGLLG + + ++ FQD
Sbjct: 1105 KLIT--TGTPIENHLGELWNLFRFIN---PGLLGSFESFNQRFAIPIEK--------FQD 1151
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVG 459
K VR +L L+ Q ++RRLK +L +LP + ++ + L R E+ +A A+
Sbjct: 1152 --KQVR-NKLKKLI-QPFLLRRLKNQVLEELPSRTEILLHVELSREEMAFYEALRHEAIS 1207
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAES 518
+ +S A + ++ ACC + EL +KL F E L
Sbjct: 1208 KLTESGATAGHKHLQVLAEIMRLRRACCNPSLVMPDTELSSSKLQLFAEVLG-------- 1259
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
D+ +K ++F+ + L +++++ ++GI + +DG+T +R+ V +FQ
Sbjct: 1260 ------DLLENHHKALVFSQFVDHLHIIRDYLDKQGINYQYLDGSTPAPERKKRVDAFQ- 1312
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ + +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY
Sbjct: 1313 AGSGDVFLISLKAGGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTIYRLV 1372
Query: 639 AKDTTDE 645
AKDT ++
Sbjct: 1373 AKDTIED 1379
>gi|373457353|ref|ZP_09549120.1| SNF2-related protein [Caldithrix abyssi DSM 13497]
gi|371719017|gb|EHO40788.1| SNF2-related protein [Caldithrix abyssi DSM 13497]
Length = 1046
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 125/486 (25%), Positives = 225/486 (46%), Gaps = 86/486 (17%)
Query: 192 KLPKSLLDVILPFQLEGV-------RFGLRRGGRCLIADEMGLGKTLQAIAIAAC----- 239
+LPK+ + P+Q G+ +GL G CL AD+MGLGKT+QA+A+
Sbjct: 578 ELPKNFRGELRPYQKAGLDWLVFLNEYGL---GGCL-ADDMGLGKTIQALALLQLQKEKL 633
Query: 240 ---FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
+S L+V P + +W E R+ P L +H N H +F +++
Sbjct: 634 KKNLVS----LIVAPTSVLTNWQNEAARFTP-DLKVYLHAGLEREKNVRHFEQFD-LIIT 687
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY +L R + E + +I+DES ++ P V A + ++++GTP
Sbjct: 688 SYALLWRDFDLLKEISFHYVILDESQKIK------NPLSVTARAAYRLRASHRLVMTGTP 741
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ +++ Q + PG+LG K F + QG Q + E+L L
Sbjct: 742 IENNLAELWSQFQFINPGMLGALK-AFTTHFGKAIEKQGDQE----------KAEQLRRL 790
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+ ++RR K + +LPPK I+ +D+ K
Sbjct: 791 I-YPFILRRTKDMVAKELPPKVENILFC-----------------------DMSDQQQKA 826
Query: 477 SDEHDDSGACCRLGKISYQELGIAK------LSGFREWLSIHPVIAESDGAADI------ 524
++ D L I+ + L +K L+ R+ L+IHP + E++ +D
Sbjct: 827 YEKWRDYYRALILKTINEKGLNRSKMKVLEGLTRLRQ-LAIHPAMVENNHKSDSGKFYAL 885
Query: 525 -----DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
+V ++K+++F+ +K L V++ + ++ I ++ +DG+T ++RQ V FQ +
Sbjct: 886 HDILEEVIKENHKVLLFSQFVKALTLVRQGLDQRSIPYLYLDGST--KNRQKLVDKFQNN 943
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+++KI +I + AGG+GL+ ++A V+ L+ +P++ QA DRAHR GQ+ V +Y
Sbjct: 944 SKIKIFLISLKAGGLGLNLTAADYVIHLDPWWNPAVEAQAMDRAHRIGQSKKVFVYKMIT 1003
Query: 640 KDTTDE 645
+ + +E
Sbjct: 1004 RGSVEE 1009
>gi|220910355|ref|YP_002485666.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
7425]
gi|219866966|gb|ACL47305.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
7425]
Length = 1403
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/483 (26%), Positives = 228/483 (47%), Gaps = 65/483 (13%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAI 234
EHL E LP +L + +Q++G + R G CL AD+MGLGKTLQA+
Sbjct: 930 EHLQPE--------LPSTLQADLRDYQIDGFHWLARLAHWGVGACL-ADDMGLGKTLQAL 980
Query: 235 AIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294
A+ AG LVV P + ++W E +R+ P I G R + + ++
Sbjct: 981 AVILTRAPAGPTLVVAPTSVGMNWISEAQRFAPTL--NLIQFGSGDRQKLLDHLQPLDLL 1038
Query: 295 VISYTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIV 350
V SY +L + + + + +W +++DE+ ++ +KR+ +A +++ K I
Sbjct: 1039 VCSYGLLQQEEVAEMLARVEWQTIVLDEAQSIKNVATKRS------QAAMNLQGGFKLIT 1092
Query: 351 LLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
+GTP L +++F IN PGLLG + F + + ++ Y D +
Sbjct: 1093 --TGTPIENHLGELWNLFRFIN---PGLLGSLE-SFNQRFA--TPIEKYG-----DRAAR 1139
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVIND 463
RL++L Q ++RR K +L +LP + I+ + L + E+ +A A+ +++
Sbjct: 1140 TRLKKL----IQPFILRRTKNQVLAELPSRTEIILHVDLSQEEMAFYEALRQQAITKLSE 1195
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKISYQE-LGIAKLSGFREWLSIHPVIAESDGAA 522
S+ A ++ ACC + L AKL F E L
Sbjct: 1196 SDATAGAKHLQVLAEIMKLRRACCNARLVMPDTPLPSAKLQLFGEVLE------------ 1243
Query: 523 DIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
++ +K ++F+ + L ++ ++ E+ I + +DG+T +R+ V +FQ + +
Sbjct: 1244 --ELLANQHKALVFSQFVDHLQLIRAYLEEQKITYQYLDGSTPAAERKKRVDAFQ-AGQG 1300
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY AK T
Sbjct: 1301 DVFLISLKAGGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQHRPVTIYRLVAKHT 1360
Query: 643 TDE 645
+E
Sbjct: 1361 IEE 1363
>gi|149918387|ref|ZP_01906877.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
gi|149820687|gb|EDM80097.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
Length = 1385
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 215/461 (46%), Gaps = 68/461 (14%)
Query: 204 FQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWA 259
+Q EG + R G CL AD+MGLGKT+QA+A+ A S G LVVCP + +W
Sbjct: 937 YQREGYEWMWRLAEAGLGACL-ADDMGLGKTVQALALLAQRASKGPALVVCPTSVVHNWI 995
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E +R+ P PA + R + R ++V SY +L +++ + +A ++ D
Sbjct: 996 AETQRFAPSLRPA-VLADAPDREELLAAARSRDLIVCSYGLLVSEAEALADLTFATVVFD 1054
Query: 320 ESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E+H ++ +KR E+ A + L+GTP +RP +++ +L PGLLG
Sbjct: 1055 EAHALKNERTKRAKAARELDASFRLG--------LTGTPVENRPAELWGLFRVLLPGLLG 1106
Query: 378 -KAKYD--FAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
+ ++D FAK QG + Q L LLK ++ RR K +L +L
Sbjct: 1107 TRKQFDERFAKPIA-----QGEREAASQ----------LRALLKHFIL-RRTKAQVLDEL 1150
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
PP+ + EI A + A ++ + ++H R+
Sbjct: 1151 PPRTEVTL-------EIEPTAKASAYYEALRRRAL--ESLEGGEQHTQR---VRI----- 1193
Query: 495 QELGIAKLSGFREWLSIHPVIAESDG--AADIDVNPR--------SNKMIIFAHHLKVLD 544
+A+L+ R+ ++ P + + G A ID R ++ ++F L +
Sbjct: 1194 ----LAELTRLRQ-AAVDPRLLDERGPAGAKIDALTRQLLSLREEGHRALVFTQFLGAMA 1248
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+++ GI ++ +DG T +R V +FQ + E + ++ + AGGVG++ + A V
Sbjct: 1249 LMRQAFEAAGIEYLELDGATPAAERARRVDAFQ-AGEGDVFMLSLRAGGVGMNLTGADYV 1307
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ L+ +P++ QA DRAHR GQ+ V +Y +K T +E
Sbjct: 1308 LHLDPWWNPAVEDQATDRAHRLGQSRPVTVYRLVSKGTIEE 1348
>gi|83310005|ref|YP_420269.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82944846|dbj|BAE49710.1| Superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
Length = 760
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 138/497 (27%), Positives = 228/497 (45%), Gaps = 61/497 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG------GRCLIADEMGLGKTLQAIAIAACFISAGSI 246
LP + I P Q+ G+ L+ G ++ADE GLGKTL A+A A A
Sbjct: 195 LPSATAARIKPHQIVGIEQILKGGVAGAGNSEIILADEQGLGKTLTALA-ALEIADAWPA 253
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLV-FGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+++ PA+ +L+WA+E WLP IH++ G R V L+ +++++Y +
Sbjct: 254 VIITPAVAKLNWADEAADWLPH---RRIHVIGVGARAAGVPLSD-AEIIILNYEVTKANL 309
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
++I L+ DE+ +++ + ++ E VKA+L+ R+ L++GTP +++P ++
Sbjct: 310 DALIAIQPQALVCDEAQYLK-TYNSARTEAVKALLEKTKPTIRL-LMTGTPIINKPRELL 367
Query: 366 HQINMLWPGLLGKAK--YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+ +L P LG + FA YC K + G F DFS EEL +++ ++
Sbjct: 368 TLLTLL-PVSLGAMGGFWHFAVRYCGAKRRRIGYGSEFIDFSGAENTEELADRVRRVCLL 426
Query: 424 RRLKQHLLVQLPPK------------------RRQIIRLLL-----KRSEIVSAKAAVGV 460
RR K+ +L L K R ++ + + +I+ A+ A
Sbjct: 427 RREKKQVLPDLADKLWCQADVGLANRYEYDDANRNLMTWMTQYRPQQAEDILEARRARHR 486
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL------------SGFREW 508
+E DA D DE + +IS E G+ +L S R+
Sbjct: 487 ALLAELDALEASGDDDEDEM-----YLLVNQISLLEFGLGELGQADLDEALRRVSVLRQL 541
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
I + A V+ S K+IIFAHH++V +Q S+ + IDG T
Sbjct: 542 TGIGKIPAAVTWVEHFLVSKPSEKLIIFAHHIEVQQQLQVAFSDALV----IDGKTSATA 597
Query: 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
R+ AV +FQ ++ I + A L + A++V+F+EL +PS + QA DRAHR GQ
Sbjct: 598 RRKAVKAFQAEGGPRLIICSLRAAQTALTLTRARHVLFVELDWTPSGIEQAADRAHRIGQ 657
Query: 629 TSAVNIYIFCAKDTTDE 645
V I + A + D+
Sbjct: 658 DGQVEITLMVAPGSLDD 674
>gi|302821505|ref|XP_002992415.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
gi|300139831|gb|EFJ06565.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
Length = 1016
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/490 (24%), Positives = 221/490 (45%), Gaps = 67/490 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P ++ + +QL G+ + +R G ++ADEMGLGKTLQ I++ A + I
Sbjct: 132 PACIIGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHESRGISGPH 191
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLV----FGHRNNPVHLTRFPRVVVISYTMLH 302
+VV P +W E+ R+ P H R+ + +F V V S+ M
Sbjct: 192 MVVAPKSTLGNWMNEIRRFCPVLRAFKFHGTQDERAQQRDYQLVAGKFD-VCVTSFEMAI 250
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ R ++ + W +I+DE+H ++ +E + + + + R+ L++GTP + +
Sbjct: 251 KERAALKKFSWRYIIIDEAHRIK-----NENSLLAKTMRLFSTNYRL-LITGTPLQNNLH 304
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQT 420
+++ +N L P + A+ T+ + + G Q ++ Q K +R
Sbjct: 305 ELWALLNFLLPEIFSSAE-----TFDEWFQISGENDQQEVIQQLHKVLR----------P 349
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLK + LPPK+ I+++ + + + KA + KD D
Sbjct: 350 FLLRRLKSDVERGLPPKKETILKVGMSQMQRNYYKALL---------------QKDIDAI 394
Query: 481 DDSGACCRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
+ G RL I+ Q E G +G E L + +
Sbjct: 395 NTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTG--EHLVENSGKMVLLDKLLPKL 452
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IA 585
RS++++IF+ ++LD ++++ +G RIDG T DR+ A+ +F K I
Sbjct: 453 KQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDREFAIEAFNREGSEKFIF 512
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 513 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTQYTIEE 572
Query: 646 SHWQNLNKSL 655
+ K L
Sbjct: 573 KVIERAYKKL 582
>gi|212715703|ref|ZP_03323831.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661070|gb|EEB21645.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 1239
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 133/492 (27%), Positives = 226/492 (45%), Gaps = 69/492 (14%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACF 240
+++D ++P L +V+ P+Q+EG ++ +G ++ADEMGLGK++Q +++
Sbjct: 749 KIIDPKRYEVPSKLKNVLRPYQVEGFQWLSTLWDKGFGGILADEMGLGKSVQLLSLVEAR 808
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR---------------NNP- 284
+G L+VCPA L +WA E E+ F I +V G + N+P
Sbjct: 809 KGSGPALIVCPASLVYNWAAECEK---FTQDLTIEVVAGTKAQRRKLIATVAQQWNNSPA 865
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344
+ T+ VV+ SY +L R + +AL+ +DE+ ++ + + KAV + A
Sbjct: 866 TNETQQTDVVITSYDLLRRDVDDYADCRFALMALDEAQYI----KNHATKLAKAVKQITA 921
Query: 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404
+ + L+GTP +R +++ + L PGLLG F + Y G + + D
Sbjct: 922 EHR--FALTGTPIENRLSELWSIFDFLMPGLLGTYT-KFREKYEQPIMAPGPEHSVMAD- 977
Query: 405 SKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS 464
+L+ L L + RRLK+ +L LP K ++ + L+ + + ++
Sbjct: 978 ----KLQALVGLFIK----RRLKKDVLTDLPDKFENVLTVKLE-----GEQRKLYAAHEQ 1024
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GA 521
AT KT KD+D KI +A+ + RE + P + +D +
Sbjct: 1025 RLRATLTKT-KDAD--------FNTKKIRI----LAEFTLLRE-ICCDPRLVYADAKNAS 1070
Query: 522 ADIDV--------NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
A +D K+++F+ LD + ++E G+ F I G T + R V
Sbjct: 1071 AKLDAICELVSTCMDEGKKVLVFSQFTSFLDLIGTRLAEHGVDFYTITGETPKKRRVELV 1130
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F N++ + +I + AG GL+ A VV + + + QA DRAHR GQT VN
Sbjct: 1131 DEFN-GNDIPVFLISLKAGNTGLNLVGASVVVHADPWWNAAAQNQATDRAHRIGQTQDVN 1189
Query: 634 IYIFCAKDTTDE 645
+Y AKDT +E
Sbjct: 1190 VYQIVAKDTIEE 1201
>gi|171915261|ref|ZP_02930731.1| helicase, Snf2 family protein [Verrucomicrobium spinosum DSM 4136]
Length = 914
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 144/534 (26%), Positives = 236/534 (44%), Gaps = 98/534 (18%)
Query: 179 EHLSDEVVDEMIGKLPK------SLLDV-ILPFQLEGVRFGLRRGGRCLIADEMGLGKTL 231
EH D +V E I K P SLL +LP+QL+G+ F +G R ++ADEMGLGKT+
Sbjct: 308 EHRMDGLVKE-IRKAPAKHPLRTSLLKTELLPYQLDGIAFAAGKG-RAVLADEMGLGKTI 365
Query: 232 QAIAIA---ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG---HRNNPV 285
Q + +A A +LVVCPA L+ W E+ER FC + +V G RN
Sbjct: 366 QGVGVAEFLARHADVRRVLVVCPASLKSQWKLEIER---FC-GRSVQIVSGKTSERNALY 421
Query: 286 HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345
F + +Y + R + W L+I+DE+ ++ + AK
Sbjct: 422 SGDAF--FTLCNYEQVLRDYLDIERTSWDLIILDEAQRIK---------------NWEAK 464
Query: 346 VKRIV---------LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY---CDVKTV 393
RI+ +L+GTP +R D+F + + LG A Y F ++ + V
Sbjct: 465 TSRIIKGLRSPFALVLTGTPLENRLDDLFSVVEFVDDRRLGPA-YRFFHSHRVATETGRV 523
Query: 394 QGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
GY+ L+ L +Q V++RR + + + LPP+ +I+R
Sbjct: 524 SGYKN--------------LDALRQQLEPVLLRRTRASIALDLPPRTTEIVR-------- 561
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511
+ A +++S N T K D RL K L +A++S +L
Sbjct: 562 IPATEEQQQLHNSHMVTVNAITSKKFLSEMD---LLRLQK----ALLMARMSANSTYL-- 612
Query: 512 HPVIAESDGAAD-----------IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
V +S G + + P K+I+F +L+ ++ + + FVR+
Sbjct: 613 --VDKQSPGFSSKLDRLAELLEALSAEP-ERKIILFTEWTTMLNLIEPILERLKMDFVRL 669
Query: 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
DG + RQ+ V FQ + + ++ + AG GL+ +A V+ ++LP +P+L+ Q
Sbjct: 670 DGQVAQKKRQALVSEFQGNPKCRV-FLTTNAGSTGLNLQAADTVINVDLPWNPALLEQRI 728
Query: 621 DRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
RAHR GQ V +++ + T +E+ L ++SA LQE+A+
Sbjct: 729 ARAHRMGQKRKVQVHLLVTEGTIEENLLATLGAK-HELASAVLDPDSTLQEVAL 781
>gi|193785976|dbj|BAG54763.1| unnamed protein product [Homo sapiens]
Length = 827
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 27/256 (10%)
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 1 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 53
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 54 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 96
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 97 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 156
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 157 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 216
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 217 TLNGRKEKIQ--AEEG 230
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 646 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 705
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 706 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 739
>gi|409100265|ref|ZP_11220289.1| SNF2-like protein [Pedobacter agri PB92]
Length = 963
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 219/461 (47%), Gaps = 65/461 (14%)
Query: 217 GRCLIADEMGLGKTLQAIAI--------AACFISAGSILVVCPAILRLSWAEELERWLPF 268
G CL AD+MGLGKT+Q +A+ A + A S L++ P L +W E +++ P
Sbjct: 521 GGCL-ADDMGLGKTIQTLAMLQKVKEDDQARGLHATS-LIIMPTSLIYNWLTEAKKFTP- 577
Query: 269 CLPADIHLVFG-HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327
I+ G +RN V +V+ +Y + + + + +I+DES +++
Sbjct: 578 --KLKIYAHTGSNRNKDVANFANYDIVITTYGVTRVDVEELKNFYFNYVILDESQNIKNP 635
Query: 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387
S K+V + +K + ++LSGTP + D++ Q+ L PGLLG + F Y
Sbjct: 636 ASKS----FKSVRSLKSKYR--LILSGTPVENSVGDLWSQLTFLNPGLLGTQAF-FYDEY 688
Query: 388 CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK 447
VQ + + +D K +L+ + + ++RR K+ + +LPPK Q+I +
Sbjct: 689 -----VQAIEKK--KDEEKARKLQSI----IKPFVLRRTKEQVAAELPPKTEQVIYCDMS 737
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
++ + K A + + D+ + +L + L+ R+
Sbjct: 738 ENQ--------AAYYEKTKSAYRNDLLQSMDDGTFAQKQVQL---------LQGLTALRQ 780
Query: 508 WLSIHPVIAESDGAADI-----------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
L+ HPV+ +++ +D +V +K+++F+ +K LD ++ + I
Sbjct: 781 -LANHPVMIDNEYESDSGKFENVIHTLDNVLKGGHKVLVFSQFVKHLDIFKKHFEAENIP 839
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
F +DG T R+R V FQ + ++K+ +I I AGGVGL+ + A V L+ +P++
Sbjct: 840 FAYLDGAT--RNRGEIVSEFQQNTDLKVFLISIKAGGVGLNLTQADYVFILDPWWNPAVE 897
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDES--HWQNLNKSL 655
QA DR HR GQ V IY F AKDT +E QN KSL
Sbjct: 898 QQAIDRTHRIGQDKKVFIYKFIAKDTVEEKILALQNRKKSL 938
>gi|407005908|gb|EKE21922.1| hypothetical protein ACD_7C00091G0002 [uncultured bacterium]
Length = 1231
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/473 (24%), Positives = 210/473 (44%), Gaps = 58/473 (12%)
Query: 193 LPKSLLDVILPFQLEGVR-FGLRRGGRC--LIADEMGLGKTLQAIAIAACF-ISAGSILV 248
LP + + +Q +G+ F R R ++AD+MGLGKTLQA+ + + +V
Sbjct: 760 LPVKINKTLRDYQKDGISWFHFLRKYRFAGVLADDMGLGKTLQALTLLEMNKVKEKPSVV 819
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR----L 304
+CP L +W +E ++ P I R + + +++ SY+ + +
Sbjct: 820 ICPKTLLFNWEDEARKFFPNLKTLIIEGAPKERAKNIEKIKNYDLIITSYSTIKKDGAIY 879
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
I+ ++ L DE+ ++ K + +AV + A K + L+GTP + +I
Sbjct: 880 ENKKIKFNYCFL--DEAQFIKNHK----TQNAQAVKKIDADYK--LALTGTPLENSVSEI 931
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VM 422
+ + L PG LG + + K + L L K+T M
Sbjct: 932 WSVFDFLMPGFLG--------------NYNNFTKRFLTPIMKHNDFKALTELRKKTECFM 977
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR K +L +LPPK QI+ L ++ + + + + + ++K S H
Sbjct: 978 LRRTKSEVLKELPPKIEQILVSELTEAQNILYQEILANVKTEIEKTVSEKGFAKSQIHIL 1037
Query: 483 SG-----ACCR-----LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
+G C L Y + AKL F+E + ++ + K
Sbjct: 1038 AGLMKLRQVCNHPTLLLKNKDYTKYESAKLESFKELIG--------------EIVSSNRK 1083
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
+++F+ ++LD + +++ I ++ + G T ++R+ V F S++ K+ +I + AG
Sbjct: 1084 VLVFSQFTQMLDILASVLNKDKIEYLYLSGKT--KNRKELVEEFNGSDKKKVFLISLKAG 1141
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G GL+ +SA NV+ + +PS+ QA DR HR GQ +VN+Y AK T +E
Sbjct: 1142 GTGLNLTSADNVIIFDPWWNPSVENQAIDRTHRIGQKKSVNVYRLIAKGTLEE 1194
>gi|426337274|ref|XP_004032638.1| PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Gorilla
gorilla gorilla]
Length = 827
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 27/256 (10%)
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 1 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 53
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 54 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 96
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 97 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 156
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 157 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 216
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 217 TLNGRKEKIQ--AEEG 230
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 646 KGYLQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 705
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 706 FETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLL 739
>gi|395732312|ref|XP_002812483.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3
[Pongo abelii]
Length = 827
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 27/256 (10%)
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEH 480
MIRRLK +L QLPPK RQ I L AA +N S E+ +TP
Sbjct: 1 MIRRLKTEVLTQLPPKVRQRIPFDL-------PSAAAKELNTSFEEWEKIMRTPNSGAME 53
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
G R+ +++ IAK ++++ + + ++D S K ++FAHHL
Sbjct: 54 TVMGLITRM----FKQTAIAKAGAVKDYIKM---MLQND----------SLKFLVFAHHL 96
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
+L E + E ++RIDG+ +R V+ FQ + ++AI+ I A G GL F++
Sbjct: 97 SMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA 156
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W LN+ + S
Sbjct: 157 ASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGS 216
Query: 661 ATNGKYDALQEIAVEG 676
NG+ + +Q A EG
Sbjct: 217 TLNGRKEKIQ--AEEG 230
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q PLC CQ+ TC++K A A ++ FC+L C EE+ +R++ +LR ++
Sbjct: 646 KGYLQAVDNEGNPLCLRCQQPTCQTKRACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKV 705
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F E GVC C ++ +L ++ QR+ +
Sbjct: 706 FETERGVCQLCNVNAQELFLRLRDAPKSQRKNLL 739
>gi|330797032|ref|XP_003286567.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
gi|325083472|gb|EGC36924.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
Length = 1281
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 225/482 (46%), Gaps = 76/482 (15%)
Query: 204 FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + R L +ADEMGLGKT+Q IA + ++ LVV P
Sbjct: 479 YQVTGLEWLVSLYNRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLSTIS 538
Query: 257 SWAEELERWLPFCLPADIHLVF--GHRNNPVHLTR-FPR----VVVISYTMLHRLRKSMI 309
+W+ E RW P +H++ G + + R P+ V++ S+ + + + +
Sbjct: 539 NWSSEFIRWSP-----KLHVIVYKGKQEERKEVFRQIPKNGFVVIITSFEYIIKDKNRLG 593
Query: 310 EQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+ DW +I+DE H ++ SK + + + K+ K +LL+GTP + +++
Sbjct: 594 KLDWVYIIIDEGHRIKNKNSKLSLQLRQYKS--------KHRLLLTGTPLQNDLSELWAL 645
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL------EELNVL--LKQ 419
+N L P + A T + + FQ+ SK L E+L ++ L Q
Sbjct: 646 LNFLLPSIFNSAD-----------TFEHWFNAPFQNQSKSKSLINVNEEEQLIIINRLHQ 694
Query: 420 TV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--GVINDSEKDATNDKTP 474
+ ++RRLK + QLP K+ ++I+ L +I ++ V GV+ P
Sbjct: 695 VLRFFLLRRLKSDVESQLPDKKEKVIKCNLSALQIAMYRSLVEYGVL------------P 742
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSG----FREWLSIHPVIAESDGAADI------ 524
D D + ++ + + K+ F+E I+ + S G D
Sbjct: 743 VDPDSKEGRAGRLKMKGFNNIVKQLQKICNHPYLFKEEWDINEDLIRSSGKFDTMDQILT 802
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VK 583
++ ++++IF +V++ ++E+ S K ++R+DG+T P +R V + +
Sbjct: 803 KMHASKHRVLIFTQMTEVINLMEEYFSLKEWTYLRLDGSTKPEERAHLVVEWNRPDSPFW 862
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
I ++ AGG+G++ +A V+ + +P + LQA+DR HR GQT+AVN+Y + ++
Sbjct: 863 IFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNAVNVYRLISANSI 922
Query: 644 DE 645
+E
Sbjct: 923 EE 924
>gi|387597378|gb|EIJ94998.1| transcription regulator [Nematocida parisii ERTm1]
Length = 1378
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 210/459 (45%), Gaps = 44/459 (9%)
Query: 204 FQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACF---ISAGSILVVCPAILRLS 257
+Q +GV + LR+ G ++ D+MGLGKT+Q ++ A + +LV+CP+ L
Sbjct: 893 YQRKGVEWICFLRKSGLSGMLCDDMGLGKTIQVLSFLAMHEKTCAEKGVLVLCPSALTGH 952
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLI 317
W E+ P I +G +F ++YT + W L+
Sbjct: 953 WHMEISSNFPTLSSCSIDEFYGKGICVASFDKFR----LNYT-------RFVSHSWFYLV 1001
Query: 318 VDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
+DE H +R + T + VK + + + +LLSGTP + +++ ++L PG LG
Sbjct: 1002 LDEGHIIR-NANTLLHQRVKMI-----RAESKLLLSGTPIQNTVGELWALFDILMPGFLG 1055
Query: 378 KAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPP 436
K K DF+K Y ++ + +G + V+LE+L+ + ++ RR+K+ +L LPP
Sbjct: 1056 KEK-DFSKEYIKPIEKAREGKGTPHEAEIAKVKLEDLHRAVLPFIL-RRMKETVLSDLPP 1113
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG----ACCRLGKI 492
K +I + E + K + + E KT S C L +
Sbjct: 1114 K---VISDIYVDLEEMQQKVYNEISANGEAGGEYGKTTPTSGNFSLLSRLIKTCSHLSLL 1170
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ E+ + S V+A D + V +NK++IF + +D I E
Sbjct: 1171 TGAEVPSILTGKEKNSASSGKVLALLDL---LKVMVNNNKVLIFCQYKATID---RLIKE 1224
Query: 553 KGIG-----FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
GI ++R+DG DR + F E+ I + AGG+GL+ + A +V+F
Sbjct: 1225 VGIALPEAKWLRLDGTVKGDDRSALAKKFNSDPEMSIMYLTTHAGGLGLNLTGADSVIFF 1284
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
E +P + LQA DRAHR GQ +VN++ +K+T +ES
Sbjct: 1285 EHDWNPMMDLQAMDRAHRIGQKKSVNVFRLISKNTIEES 1323
>gi|387593718|gb|EIJ88742.1| transcription regulator [Nematocida parisii ERTm3]
Length = 1378
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 210/459 (45%), Gaps = 44/459 (9%)
Query: 204 FQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACF---ISAGSILVVCPAILRLS 257
+Q +GV + LR+ G ++ D+MGLGKT+Q ++ A + +LV+CP+ L
Sbjct: 893 YQRKGVEWICFLRKSGLSGMLCDDMGLGKTIQVLSFLAMHEKTCAEKGVLVLCPSALTGH 952
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLI 317
W E+ P I +G +F ++YT + W L+
Sbjct: 953 WHMEISSNFPTLSSCSIDEFYGKGICVASFDKFR----LNYT-------RFVSHSWFYLV 1001
Query: 318 VDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
+DE H +R + T + VK + + + +LLSGTP + +++ ++L PG LG
Sbjct: 1002 LDEGHIIR-NANTLLHQRVKMI-----RAESKLLLSGTPIQNTVGELWALFDILMPGFLG 1055
Query: 378 KAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPP 436
K K DF+K Y ++ + +G + V+LE+L+ + ++ RR+K+ +L LPP
Sbjct: 1056 KEK-DFSKEYIKPIEKAREGKGTPHEAEIAKVKLEDLHRAVLPFIL-RRMKETVLSDLPP 1113
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG----ACCRLGKI 492
K +I + E + K + + E KT S C L +
Sbjct: 1114 K---VISDIYVDLEEMQQKVYNEISANGEAGGEYGKTTPTSGNFSLLSRLIKTCSHLSLL 1170
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ E+ + S V+A D + V +NK++IF + +D I E
Sbjct: 1171 TGAEVPSILTGKEKNSASSGKVLALLDL---LKVMVNNNKVLIFCQYKATID---RLIKE 1224
Query: 553 KGIG-----FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
GI ++R+DG DR + F E+ I + AGG+GL+ + A +V+F
Sbjct: 1225 VGIALPEAKWLRLDGTVKGDDRSALAKKFNSDPEMSIMYLTTHAGGLGLNLTGADSVIFF 1284
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
E +P + LQA DRAHR GQ +VN++ +K+T +ES
Sbjct: 1285 EHDWNPMMDLQAMDRAHRIGQKKSVNVFRLISKNTIEES 1323
>gi|452822792|gb|EME29808.1| chromatin remodeling complex / DNA-dep ATPase [Galdieria
sulphuraria]
Length = 924
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/469 (23%), Positives = 204/469 (43%), Gaps = 34/469 (7%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACF----ISAG 244
+LP + D + P+Q GV++ +G ++ DEMGLGKT+Q I + A + G
Sbjct: 189 RLPADIYDRLFPYQQVGVQWLWELHCQGVGGIVGDEMGLGKTIQVIVLLASLSYSHLLPG 248
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPRVVVISYTMLH 302
+ +V PA L W E W P +H G + + + ++V SY +
Sbjct: 249 PVCIVAPATLLSQWKREFATWWPSFRVRIMHKSAGDGDLWIVEDIIEQGDILVTSYEQVR 308
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R + ++ W +I+DE H +R + E+ V V RI++ +G P +R
Sbjct: 309 RFHEYILVHKWDYVILDEGHRIR-----NPDAEITLVCKRFKTVHRIIM-TGAPLQNRLK 362
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ + ++PG LG F + + T+ Y + + L +
Sbjct: 363 ELWSLFDFVYPGKLGTLPV-FEEQFSVPITLGSYLNATPLQVHTAYKCASVLRNLVSPYL 421
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSE------IVSAKAAVGVINDSEKDATNDKTPKD 476
+RRLK+ + +QLP K+ QI+ L + + ++++ V+ S T +
Sbjct: 422 LRRLKKDVALQLPKKQEQILFCKLTKEQRELYKKYLNSRELQKVLQGSVNMLTAVSVLRK 481
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
H D Y E + + EW ++ + + ++++IF
Sbjct: 482 ICNHPDL----------YDENALEDDRRYGEWTRAGKLVVLDQ--VLLSWSKDDSRVLIF 529
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ +LD ++ F ++ ++R+DG T ++R + SF +EV + ++ GG+G+
Sbjct: 530 SQSRAMLDILEMFARQRRYTYLRMDGETAMQERMKLIDSFNQDDEVFLFLLTTKVGGLGI 589
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A VV + +PS LQA +RA R GQ V IY T +E
Sbjct: 590 NLTGANRVVLYDPDWNPSTDLQARERAWRIGQKRDVIIYRLVTSGTIEE 638
>gi|218666513|ref|YP_002425806.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518726|gb|ACK79312.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 1381
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 129/474 (27%), Positives = 222/474 (46%), Gaps = 68/474 (14%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
LP SL + P+Q EG + +R G CL AD+MGLGKTLQAIA+ G LV
Sbjct: 911 LPTSLQADLRPYQEEGYVWAMRLAEAGFGACL-ADDMGLGKTLQAIAVMLARADDGPALV 969
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGH--RNNPVHLTRFPRVVVISYTMLHRLRK 306
+ P + +W E R+ P P ++G R++ + VV++SYTM+ + ++
Sbjct: 970 IAPTSVCGNWLAETRRFAPTLQP----FLYGESDRDDLLKKAGPMDVVIVSYTMVQQAQE 1025
Query: 307 SMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ +DW LIVDE+ ++ +KR+ +A+ + A + + LSGTP +R ++
Sbjct: 1026 AFAARDWHTLIVDEAQVIKNAVAKRS------QAIFQIPADFR--MALSGTPVENRLAEL 1077
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--- 421
+ + PGLLG + + + G + ++ R + LL++ +
Sbjct: 1078 WSIMRFCNPGLLGPLS----------RFNERFAGPIERN-----RDRDAQRLLRRLIAPF 1122
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR K +L LPP+ ++ L L+ +E +A + + +A S H
Sbjct: 1123 VLRRTKSQVLDDLPPRTELVLSLALEGAESAHYEA---LRRQAIVEAEAAIAQSGSQAHF 1179
Query: 482 D---------SGAC-CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
AC RL + +G AK+ F +D A D+ N +
Sbjct: 1180 HILAQLTKLRRAACDPRLVSPNLDIVG-AKVRTF------------ADLAGDLSAN--GH 1224
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++F+ + L ++E + GI + +DG+T DR+ + FQ + + + +I + A
Sbjct: 1225 KALVFSQFVDFLTLLREPLDAAGIPYQYLDGSTPVADRERRIRDFQ-AEKGNLFLISLKA 1283
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ ++A V+ + +P+ QA RAHR GQ V +Y A+ T +E
Sbjct: 1284 GGFGLNLTAADYVIITDPWWNPAAEDQAMGRAHRIGQLRPVTVYRLVAQGTLEE 1337
>gi|302769197|ref|XP_002968018.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
gi|300164756|gb|EFJ31365.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
Length = 1234
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 122/490 (24%), Positives = 221/490 (45%), Gaps = 67/490 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P ++ + +QL G+ + +R G ++ADEMGLGKTLQ I++ A + I
Sbjct: 193 PACIIGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHESRGISGPH 252
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLV----FGHRNNPVHLTRFPRVVVISYTMLH 302
+VV P +W E+ R+ P H R+ + +F V V S+ M
Sbjct: 253 MVVAPKSTLGNWMNEIRRFCPVLRAFKFHGTQDERAQQRDYQLVAGKFD-VCVTSFEMAI 311
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ R ++ + W +I+DE+H ++ +E + + + + R+ L++GTP + +
Sbjct: 312 KERAALKKFSWRYIIIDEAHRIK-----NENSLLAKTMRLFSTNYRL-LITGTPLQNNLH 365
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQT 420
+++ +N L P + A+ T+ + + G Q ++ Q K +R
Sbjct: 366 ELWALLNFLLPEIFSSAE-----TFDEWFQISGENDQQEVIQQLHKVLR----------P 410
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLK + LPPK+ I+++ + + + KA + KD D
Sbjct: 411 FLLRRLKSDVERGLPPKKETILKVGMSQMQRNYYKALL---------------QKDIDAI 455
Query: 481 DDSGACCRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
+ G RL I+ Q E G +G E L + +
Sbjct: 456 NTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTG--EHLVENSGKMVLLDKLLPKL 513
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IA 585
RS++++IF+ ++LD ++++ +G RIDG T DR+ A+ +F K I
Sbjct: 514 KQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDREFAIEAFNREGSEKFIF 573
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 574 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTQYTIEE 633
Query: 646 SHWQNLNKSL 655
+ K L
Sbjct: 634 KVIERAYKKL 643
>gi|163798146|ref|ZP_02192082.1| swf/snf family helicase [alpha proteobacterium BAL199]
gi|159176589|gb|EDP61167.1| swf/snf family helicase [alpha proteobacterium BAL199]
Length = 1381
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/467 (26%), Positives = 221/467 (47%), Gaps = 54/467 (11%)
Query: 192 KLPKSLLDVILPFQLEGV----RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP++L + +Q+EG R G CL AD+MGLGKT+QAIA+ G L
Sbjct: 919 RLPETLQAELRDYQIEGFVWMSRLARWGAGACL-ADDMGLGKTVQAIAVLLDQAEEGPCL 977
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV P + +W E+ R+ P H + G R V+ V++ SYT+LH +
Sbjct: 978 VVAPTSVCPNWHAEIARFAPTL---RTHALAGDRAALVNGLSSRDVLICSYTLLHLAAEE 1034
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS---LSRPYDI 364
+ + W ++++DE+ ++ +E +A + A + + L+GTP L + +
Sbjct: 1035 LGTRSWRMVVLDEAQAIK----NAETRRAQATSSLQADFR--LALTGTPVENYLDELWSL 1088
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F +N PG LG ++ F K + + ++ +D R + L L++ M+R
Sbjct: 1089 FAFVN---PGFLG-SREGFQKRFA--RPIE-------RDRDPAAR-QALRALIR-PFMLR 1133
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEH 480
R K +L +LP + Q +R+ ++ E +A ++ + + A K ++
Sbjct: 1134 RTKAMVLHELPLRTEQTMRIEMEDGERAFYEALRRQSLDRLAAVDAPAGQRKIQILAEIT 1193
Query: 481 DDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
ACC I Q+ G+ KL+ F + + D+ ++ ++F+
Sbjct: 1194 RLRRACCNPALID-QDAGVPSGKLAAFLDLVD--------------DLVRNRHRALVFSQ 1238
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ L V+ + +GI + +DG+T DR+ V +FQ + + +I + AGG GL+
Sbjct: 1239 FVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQ-AGTADVFLISLRAGGTGLNL 1297
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A VV L+ +P++ QA DRAHR GQ V IY +D+ +E
Sbjct: 1298 TAADYVVHLDPWWNPAVEDQASDRAHRIGQERPVTIYRLIMQDSIEE 1344
>gi|440716061|ref|ZP_20896580.1| helicase, SNF2/RAD54 family [Rhodopirellula baltica SWK14]
gi|436439007|gb|ELP32506.1| helicase, SNF2/RAD54 family [Rhodopirellula baltica SWK14]
Length = 1381
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 124/485 (25%), Positives = 230/485 (47%), Gaps = 74/485 (15%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAAC 239
E D + K PK+L + +Q++G ++ R G CL AD+MGLGKTLQ +A+
Sbjct: 912 ESADRVRPKFPKTLNADLRDYQVDGFKWMSRLAHLGAGACL-ADDMGLGKTLQCLAVLLN 970
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVIS 297
+G LVV P + +W E+ R+ P P ++F + + + +++ S
Sbjct: 971 RGKSGPALVVAPTSVAANWVSEIARFAPSLRP----ILFSEADRETVIESLGKRDLLICS 1026
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
Y +L + + + W L++DE+ ++ ++ + +A + + A + V+L+GTP
Sbjct: 1027 YGLLANEAEKLQSRRWQTLVLDEAQAIK----NADTKRSEAAMGLEADFR--VVLTGTPM 1080
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L +++F IN PGLLG + + +Q + + R ++
Sbjct: 1081 ENHLGELWNLFQFIN---PGLLGSS--------------ESFQERFAIPIERDHR-RDVQ 1122
Query: 415 VLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
LKQ + ++RR K +L +LPP+ + + L E +A + A +
Sbjct: 1123 RQLKQLIAPFILRRTKSQVLDELPPRTEITVPIELGEDEAAMYEAM-------RRKALQN 1175
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG---AADI---- 524
+DSD DD ++ +A+L R + HP + + D AA +
Sbjct: 1176 L--EDSD--DDRPVHIKI---------LAELMRLRRF-CCHPDLVDPDAGLKAAKLERFT 1221
Query: 525 ----DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
D+ +K+++F+ + L +++ + E+ I + +DG+T + R+++V +FQ
Sbjct: 1222 DTVTDLIEGGHKVLVFSQFVGHLHLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQ-DG 1280
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
E + +I + AGGVGL+ ++A V+ ++ +P++ QA DRAHR GQ V +Y F
Sbjct: 1281 EGDVFLISLKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDRAHRMGQQRPVTVYRFITT 1340
Query: 641 DTTDE 645
T +E
Sbjct: 1341 GTIEE 1345
>gi|307180140|gb|EFN68184.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
[Camponotus floridanus]
Length = 1960
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 129/494 (26%), Positives = 220/494 (44%), Gaps = 92/494 (18%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 720 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 779
Query: 256 LSWAEELERWLP--FCLP----ADIHLVFGHRNNPVHL----TRFPR------------V 293
++W E E W P +C+ D +V R N + R R V
Sbjct: 780 INWEREFETWAPDFYCVTYVGDKDSRIVI--RENELSFEEGAVRSGRASKIRSSSIKFNV 837
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++ SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+
Sbjct: 838 LLTSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLT 891
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP + ++FH +N L + K++ + +Q + F D SK ++++L
Sbjct: 892 GTPLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKL 936
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ +L M+RRLK +L +P K I+R+ L + K I +A N
Sbjct: 937 HEMLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN--- 988
Query: 474 PKDSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIH 512
PK + D CC + SY+ + K +G LS
Sbjct: 989 PKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETSALIKAAGKLVLLSKM 1048
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A
Sbjct: 1049 LKKLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGSQRQEA 1098
Query: 573 VHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
+ F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ +
Sbjct: 1099 IDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 1158
Query: 632 VNIYIFCAKDTTDE 645
V IY F +++ +E
Sbjct: 1159 VMIYRFVTRNSVEE 1172
>gi|94263787|ref|ZP_01287593.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
gi|93455798|gb|EAT05965.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
Length = 1439
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 235/493 (47%), Gaps = 55/493 (11%)
Query: 170 TGRWNPCRPEHLSDEVVDEMIGKLP---KSLLDVILPFQLEG----VRFGLRRGGRCLIA 222
+G+ + H E++ E G LP +L + +Q+EG R G CL A
Sbjct: 944 SGKLKADKGWHHQQELLTEARGFLPTVPSTLQAELRDYQVEGFAWLARLAKLGAGACL-A 1002
Query: 223 DEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
D+MGLGKT+QA+A+ +AG LV+ P + +W EE R+ P +H + +R
Sbjct: 1003 DDMGLGKTVQALALLLHRAAAGPALVIAPTSVCPNWQEEAARFAPSL---RVHSLGQNRR 1059
Query: 283 NPVHLTRFP-RVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339
P ++V+SY +L K + E +W+ +I+DE+ ++ + +A
Sbjct: 1060 RETLAELGPLDLLVVSYGLLQTEAAAKLLAEVEWSTVILDEAQAIK----NFQTRRSQAA 1115
Query: 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQ 399
+ + A + + +GTP + ++++ N + PGLLG ++ DF + + + Q
Sbjct: 1116 MRLQAGFRCVT--TGTPVENHLGELWNIFNFINPGLLG-SQQDFKRRFI-LPIEQD---- 1167
Query: 400 LFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA----- 454
QD + RL++L + ++RR K +L +LPP R +I+ + E +
Sbjct: 1168 --QDAAARRRLKKLVL----PFILRRNKAQVLEELPP-RTEIVLTVEPTPEDAALHETIR 1220
Query: 455 KAAVGVINDSEKDATNDKTPKDSDE--HDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
+ AV V+ + E +A + K E AC + L KL F E L
Sbjct: 1221 RRAVEVLQEDEGEAAGSRHLKVLAELMRLRRAACHPRLVLGKGALMAGKLPLFAEVLH-- 1278
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
D+ +K ++F+ + L V+E++ +GIG+ +DG+T R+RQ A
Sbjct: 1279 ------------DIISNRHKALVFSQFVDHLAIVREYLDGQGIGYQYLDGSTPARERQRA 1326
Query: 573 VHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
V +FQ + E ++ I + AGG GL+ ++A V+ L+ +P++ QA DRAHR GQ V
Sbjct: 1327 VAAFQ-AGEGEVFCISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQERPV 1385
Query: 633 NIYIFCAKDTTDE 645
IY K + +E
Sbjct: 1386 TIYRLVTKGSIEE 1398
>gi|424513137|emb|CCO66721.1| predicted protein [Bathycoccus prasinos]
Length = 2464
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 130/543 (23%), Positives = 234/543 (43%), Gaps = 103/543 (18%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSI 246
P ++ V+ +QLEG+R+ +R +G C++ADEMGLGKTLQ+I+ AC G
Sbjct: 239 PAAITAVLREYQLEGLRWAVRMFDQGCSCILADEMGLGKTLQSISFLACIKEMRGVKGPH 298
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+VCP + SW +EL +W P + +V H ++ R R VVI+ T ++ +
Sbjct: 299 LIVCPLSVMSSWMDELAKWCP-----KLRVVRLHSSDENERQRLRREVVIN-TEIYDVAL 352
Query: 307 SMIEQD--------------WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR--IV 350
+ E W +I+DE H V+ + T+ + ++ R +
Sbjct: 353 TTYEMACNPSFALALTQKVYWRCVILDEGHKVKNEETTAH--------QILKRIHRQHTI 404
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
LL+GTP + ++++ ++ L P + ++ +D A + + +
Sbjct: 405 LLTGTPVQNNLHELYALLSFLHPDVFTSSEPFDRA-----------FNLNMREHKVDEKL 453
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII-------------RLLLKRSEIVSAKA 456
L + + L++ V+ RR+K + V LPPK I RLL++ S + +
Sbjct: 454 LAKAHYLMRPFVL-RRVKGEVEVSLPPKVETKIMCPLSSAQTFWYRRLLMRESGALQSLE 512
Query: 457 AVGVINDSEKDATNDKTPKDSDEHDDSGA---------------CCR---LGKISYQELG 498
A N+ + +D+ E SG CC L Q+ G
Sbjct: 513 AAASENEKKLAGV---AGEDAKEKSSSGGGDWRKLNSLLMQLRKCCNHPYLFSPGIQDEG 569
Query: 499 IAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEK 553
+ ++ +I S + +D + ++++IF+ +LD + F+ +
Sbjct: 570 V----------TLEDIIEASGKLSVLDRILIKLKENGHRVVIFSQFTSMLDILANFLHLR 619
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQS 612
G + R+DG+T R + +F N A ++ AGG+G++ +A V + +
Sbjct: 620 GHQYARLDGSTNRVQRSIDIAAFNRPNSPVFAFLLSTRAGGLGVNLQTADTCVMFDSDWN 679
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL---RCVSSATNGKYDAL 669
P + +QA R HR GQ V+IY T +E Q K L + VS + +A+
Sbjct: 680 PQVDMQAMARVHRIGQKKTVHIYRLVTAGTVEERMTQRAEKKLFLEKMVSRGSTAAAEAM 739
Query: 670 QEI 672
+ +
Sbjct: 740 EAL 742
>gi|440680991|ref|YP_007155786.1| SNF2-related protein [Anabaena cylindrica PCC 7122]
gi|428678110|gb|AFZ56876.1| SNF2-related protein [Anabaena cylindrica PCC 7122]
Length = 1403
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 117/476 (24%), Positives = 231/476 (48%), Gaps = 57/476 (11%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
V ++ +LP + + +Q++G + R G CL AD+MGLGKT+QA+A+
Sbjct: 931 VQDLQPELPSTFQAELRDYQMDGFCWLARLAHWGVGACL-ADQMGLGKTVQALAVILRNA 989
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
AG L++ P + ++W E +++ P + +R + + +++ SY +L
Sbjct: 990 HAGPTLIIAPTSVCMNWVSEAQKFAPTL--NIMQFSGANRQKLLDGLQPLDMLICSYGLL 1047
Query: 302 HR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
+ + + + + DW +++DE+ ++ +KR+ +A +++ + K +L +GTP
Sbjct: 1048 QQEEVSQMLAQVDWQTIVLDEAQAIKNMSTKRS------QAAMNLKSSFK--LLTTGTPI 1099
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L +++F IN PGLLG + F + + + ++ YQ + ++ K
Sbjct: 1100 ENHLGELWNLFRFIN---PGLLGSFE-SFNQRFAN--PIEKYQDKQARNKLKK------- 1146
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATN 470
L Q ++RR K +L +LP + ++ + L + E +A A+ + +S DA
Sbjct: 1147 --LIQPFLLRRTKNQVLEELPSRTEILLHVELSKEEKAFYEALRRQAISKLTESNADAGQ 1204
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
++ ACC + EL +KL F E L ++
Sbjct: 1205 KHLQVLAEIMKLRRACCNPSLVMPDTELSSSKLQLFGEVLD--------------ELLEN 1250
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K ++F+ + L +++++ ++ I + +DG+T +R+ +V +FQ + + + +I +
Sbjct: 1251 RHKALVFSQFVDHLHIIRDYLDKQSIKYQYLDGSTPMAERKRSVDAFQ-AGDGDVFLISL 1309
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ + +P++ QA DRAHR GQ V IY AKDT ++
Sbjct: 1310 KAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIED 1365
>gi|292606963|gb|ADE34162.1| chromodomain helicase DNA-binding protein 4 [Schmidtea mediterranea]
Length = 1868
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/553 (24%), Positives = 241/553 (43%), Gaps = 99/553 (17%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF ++ADEMGLGKT+Q I S G LV P +
Sbjct: 737 YQLEGLNWLRFSFGNVVDTILADEMGLGKTIQTITFLYSLYKEGHSKGPFLVAAPLSTVI 796
Query: 257 SWAEELERWLP------FCLPADIHLVF---------GHRNNPVHLTRFPR-------VV 294
+W E E W P + D V G H R + V+
Sbjct: 797 NWEREFEFWAPDFYVVTYVGDKDSRAVVREHEFSYEEGAMRTSKHACRMRQGTRTKFHVL 856
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
+ SY ++ + + W +L+VDE+H ++ ++ + +L + K+ +LL+G
Sbjct: 857 LTSYELISIDQALLGSISWEVLVVDEAHRLKNNQ-----SKFFRILS-SYKINYKLLLTG 910
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP + ++FH ++ + P + + D +QG+ + F D SK +++ L+
Sbjct: 911 TPLQNNLEELFHLLHFMTP-----------EKFND---MQGFLDE-FADISKEEQVKRLH 955
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKAA---- 457
+L + ++RRLK +L +P K I+R +L + + +S K
Sbjct: 956 EILGEH-LLRRLKADVLTDMPSKGEFIVRVELSPMQAKFYKYILTRNFDALSVKGGGSQI 1014
Query: 458 --VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514
+ ++ D +K + P SDE +L +Y+ L + K SG E L
Sbjct: 1015 SLINIVMDLKKCCNHPYLFPSGSDE------APKLRNGAYEGLALIKASGKLELLYKMLP 1068
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
++ G ++++IF+ ++LD +++F+ G F RIDG + RQ ++
Sbjct: 1069 KLKTGG----------HRVLIFSQMTRLLDILEDFMDYMGYKFERIDGAVTGQQRQDSID 1118
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + V + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ++ V
Sbjct: 1119 RFNAPDSVSFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQSNKVM 1178
Query: 634 IYIFCAKDTTDESHWQNLNKSLR----CVSSATNGKYDALQEIAVEGVSYLEMSDKTDRG 689
IY F ++T +E Q K + V GK A +S E+ + G
Sbjct: 1179 IYRFVTRNTVEERVTQVAKKKMMLTHLVVRPGLGGKGGA-------SMSKKELDEILKFG 1231
Query: 690 SEDLTLDQVASSD 702
+EDL ++ + D
Sbjct: 1232 TEDLFKEKDENED 1244
>gi|159465629|ref|XP_001691025.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
gi|158279711|gb|EDP05471.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
Length = 1061
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 212/470 (45%), Gaps = 41/470 (8%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q++G+ + + G ++ADEMGLGKTLQ I++ A G +V+ P
Sbjct: 178 YQMQGLNWMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLG 237
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W E +R+ P H R T P VVV SY M+ + + W
Sbjct: 238 NWVNEFKRFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHW 297
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + V+ K +L++GTP + ++++ +N L P
Sbjct: 298 RYIIIDEAHRIK-----NENSRLSLVV-RQLKTNYRLLITGTPLQNNLHELWALLNFLLP 351
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ A+ F + + + + ++ Q K +R ++RR+K +
Sbjct: 352 EIFSSAE-KFEEWFSLGDGSKEKEAEVVQQLHKVLR----------PFLLRRVKSDVERG 400
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
LPPK+ I+++ + SE+ K + + DA N +D +L K
Sbjct: 401 LPPKKETILKIGM--SEM--QKKWYAALLQKDVDALNG----GADRAKLLNVVMQLRKCC 452
Query: 494 YQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQE 548
+++ ++ S +D + R ++++IF+ +++D +++
Sbjct: 453 NHPYLFQGAEPGPPFITGEHLVENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILED 512
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFL 607
+ +G G+ RIDGNT R + + F N K I ++ AGG+G++ ++A VV
Sbjct: 513 YCLYRGYGYCRIDGNTDGEARDNMIDEFNRPNSSKFIFLLSTRAGGLGINLATADIVVLY 572
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657
+ +P + LQA DRAHR GQ V ++ FC +++ +E + K LR
Sbjct: 573 DSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRL 622
>gi|68144413|gb|AAY86155.1| chromatin-remodelling complex ATPase ISWI2 [Chlamydomonas
reinhardtii]
Length = 1086
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 212/470 (45%), Gaps = 41/470 (8%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q++G+ + + G ++ADEMGLGKTLQ I++ A G +V+ P
Sbjct: 178 YQMQGLNWMIHLYDNGINGILADEMGLGKTLQTISLVAYLYEYRGITGPHIVITPKSTLG 237
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W E +R+ P H R T P VVV SY M+ + + W
Sbjct: 238 NWVNEFKRFAPIIRVTKFHGNADERMIQKETTCAPGRFDVVVTSYEMVIKEKNHFKRFHW 297
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + V+ K +L++GTP + ++++ +N L P
Sbjct: 298 RYIIIDEAHRIK-----NENSRLSLVV-RQLKTNYRLLITGTPLQNNLHELWALLNFLLP 351
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ A+ F + + + + ++ Q K +R ++RR+K +
Sbjct: 352 EIFSSAE-KFEEWFSLGDGSKEKEAEVVQQLHKVLR----------PFLLRRVKSDVERG 400
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
LPPK+ I+++ + SE+ K + + DA N +D +L K
Sbjct: 401 LPPKKETILKIGM--SEM--QKKWYAALLQKDVDALNG----GADRAKLLNVVMQLRKCC 452
Query: 494 YQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQE 548
+++ ++ S +D + R ++++IF+ +++D +++
Sbjct: 453 NHPYLFQGAEPGPPFITGEHLVENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILED 512
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFL 607
+ +G G+ RIDGNT R + + F N K I ++ AGG+G++ ++A VV
Sbjct: 513 YCLYRGYGYCRIDGNTDGEARDNMIDEFNRPNSSKFIFLLSTRAGGLGINLATADIVVLY 572
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657
+ +P + LQA DRAHR GQ V ++ FC +++ +E + K LR
Sbjct: 573 DSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRL 622
>gi|348030817|ref|YP_004873503.1| SNF2-like protein [Glaciecola nitratireducens FR1064]
gi|347948160|gb|AEP31510.1| SNF2-related protein [Glaciecola nitratireducens FR1064]
Length = 1433
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 130/479 (27%), Positives = 223/479 (46%), Gaps = 66/479 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
K+P + + +Q+ G + R G CL AD+MGLGKTLQA+A+ S G L
Sbjct: 957 KIPSTFQAQLREYQIAGFDWASRLAHWGAGACL-ADDMGLGKTLQALAVLLTRASQGPSL 1015
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV--------VVISYT 299
V+ P + +W +E ++ P +I L + P L R + V+ISY
Sbjct: 1016 VIAPTSVCFNWQQEALKFAP---TLNIKLF---ADAPSTLQRIELLNDLKPFDCVIISYG 1069
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
+L R + E W ++ DE+ ++ +KRT KA + + K I +GTP
Sbjct: 1070 LLQRETDILKEVRWHSIVADEAQALKNPLTKRT------KAAIALKGDFKMIT--TGTPI 1121
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L+ + +F IN PGLLG K F + + + S+G++
Sbjct: 1122 ENDLTELWSLFRFIN---PGLLGNLKR-FGQRFSTPIENAKEDKLAARKASQGLKA---- 1173
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS--EKDA 468
L Q ++RR+K +L +LP + I++ + + E +A A+ I+ + + +A
Sbjct: 1174 --LIQPFILRRMKNQVLTELPSRTDITIQVEMSQKERDFYEALRLNAIDNISQAGQQVNA 1231
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDV 526
+ ++ ACC K+ E I AKL+ E L ++
Sbjct: 1232 GEQRIRMLAELVKLRQACCH-PKLVMAETDISSAKLAALNELLD--------------EL 1276
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
++K +IF+ + L +++ + KG + +DG+T ++RQ V++FQ + E I +
Sbjct: 1277 TLNNHKALIFSQFVGHLKIIKQHLEAKGFSYQYLDGSTPQKERQKRVNAFQ-AGEGDIFL 1335
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +E
Sbjct: 1336 ISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRMGQKRPVTIYRLITQNTIEE 1394
>gi|367017628|ref|XP_003683312.1| hypothetical protein TDEL_0H02420 [Torulaspora delbrueckii]
gi|359750976|emb|CCE94101.1| hypothetical protein TDEL_0H02420 [Torulaspora delbrueckii]
Length = 833
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 145/623 (23%), Positives = 271/623 (43%), Gaps = 107/623 (17%)
Query: 179 EHLSDEVVDEMIGKLPKSLLD--VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQA 233
+++SD + D+ I + +LL V+ +QLEG+ + + G ++AD+MGLGKT+Q+
Sbjct: 180 QNVSDVMDDKTIAEQQPALLKNCVLKGYQLEGLNWLITLYENGLNGILADDMGLGKTIQS 239
Query: 234 IAIAACFI----SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
IA+ A FI + G L+ P +W E E++ P + G++ L +
Sbjct: 240 IALLA-FIYEMDTKGPFLIAAPLSTVDNWMNEFEKFAPDLPVLKYYHQGGYKERSKLLRK 298
Query: 290 FPR------VVVISYTMLHRLRKSMIEQDWALLIVDESH---HVRCSKRTSEPEEVKAVL 340
F + VVV SY M+ R ++ + W LIVDE H ++ C
Sbjct: 299 FFKNTKGTGVVVTSYEMIIRDSDQIMSKQWKFLIVDEGHRLKNINCK------------- 345
Query: 341 DVAAKVKRI-----VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY----CDVK 391
+ ++KRI +LL+GTP + +++ +N + P + + F K + D++
Sbjct: 346 -LIQELKRINTTNRLLLTGTPLQNNLGELWSLLNFIMPEIFADFEI-FNKWFNFEDLDLQ 403
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ-LPPKR------------ 438
+ ++ D + + L+ +LK ++RRLK+ +L LPPKR
Sbjct: 404 SDSSKLNRVINDELEKNLISNLHTILK-PFLLRRLKKTVLAGILPPKREYIIDCPLTPMQ 462
Query: 439 -------------RQIIRLLLKRSEIVSAKAAVGVINDSEKDATN--------DKTPKD- 476
+ I + L+K ++++ V N S +D N D P D
Sbjct: 463 NKLYRMGLSGKLKKTIFKELIKHFFTLNSRYIGNVSNKSIRDYINYKLGDQAVDGPPSDI 522
Query: 477 -------SDEH-DDSGACCRLGKISYQELGIAKLSGFREWLSIHP------VIAESDGAA 522
DEH +L + Q I + + + P ++ + G
Sbjct: 523 LKKMDILYDEHLHKECTSIKLQNMMMQLRQIVDSTFLFYFPYMQPEDLTLEMLLSTSGKL 582
Query: 523 DI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
+ + + +K++IF+ +K+LD ++++ + +RIDG+ R++ + F
Sbjct: 583 QVLQKLLPPLIKKGHKVLIFSQFIKMLDLIEDWCELNSLNALRIDGSVDNETRKAQISQF 642
Query: 577 QL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
++ + ++ A G+G++ + A VV + +P + LQA DR HR GQ V +Y
Sbjct: 643 NSPKDQTNVFLLSTRAAGLGINLAVADTVVLFDSDWNPQVDLQAMDRCHRIGQVRPVIVY 702
Query: 636 IFCAKDTTDESHWQNLNKSLRCVSSATN-GKYDALQEIAVEGVSYLEMSDKTDRGSEDLT 694
C +T + R G+++ L+++A+ S+L+ S GS
Sbjct: 703 RLCCDNTVEHIILTRAASKRRLEKLVIQMGQFNTLRKLALNEKSFLQQSSTNTHGS---- 758
Query: 695 LDQVASSDQFQELMKVPESSEAS 717
+ + + FQEL ++ S E+S
Sbjct: 759 --RATNKELFQELSQLLLSGESS 779
>gi|119512991|ref|ZP_01632051.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
gi|119462365|gb|EAW43342.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
Length = 1404
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 119/476 (25%), Positives = 226/476 (47%), Gaps = 57/476 (11%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
V + +LP + + +Q++G + R G CL AD+MGLGKT+QA+A+
Sbjct: 932 VQNLQPELPSTFQAELRDYQMDGFCWLARLAHWGVGACL-ADQMGLGKTVQALAVILNHA 990
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
G L++ P + ++W E +R+ P + +R + + ++V SY +L
Sbjct: 991 HEGQTLIIAPTSVCMNWVSEAQRFAPTL--NIVQFAGANRQKLLDELQPLDMLVCSYGLL 1048
Query: 302 HR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
+ + + + E W +++DE+ ++ +KR+ +A +++ + K I +GTP
Sbjct: 1049 QQEEVAQMLSEVQWQTIVLDEAQAIKNMTTKRS------QAAMNLKSGFKLIT--TGTPI 1100
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L +++F IN PGLLG + + ++ FQD +L++L
Sbjct: 1101 ENHLGELWNLFRFIN---PGLLGSFESFNQRFAIPIEK--------FQDKQARNKLKKL- 1148
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATN 470
Q ++RR K +L +LP + ++ + L R E+ +A A+ + +S+ +A
Sbjct: 1149 ---IQPFLLRRTKNQVLEELPDRTEILLHVELSREEMAFYEALRRQAISKLTESDAEAGK 1205
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
++ ACC + EL +KL F E L ++
Sbjct: 1206 KHLQVLAEIMKLRRACCNPSLVMPDTELPSSKLQLFGEVLG--------------ELLEN 1251
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K ++F+ + L +++++ ++GI + +DG+T +R+ V +FQ + + +I +
Sbjct: 1252 RHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTPVAERKKRVDAFQ-AGTGDVFLISL 1310
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ + +P++ QA DRAHR GQ V IY AKDT ++
Sbjct: 1311 KAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIED 1366
>gi|303238092|ref|ZP_07324632.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
gi|302481727|gb|EFL44782.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
Length = 1337
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 228/474 (48%), Gaps = 70/474 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++PK+L + +Q EG + R G CL AD+MGLGKTLQ I++ G+ L
Sbjct: 876 RVPKTLKADLRKYQEEGFEWLSRVTSWGAGVCL-ADDMGLGKTLQTISLLLEQKKEGASL 934
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
VV PA + +W E+ ++ P L I R + + +V+ +Y ML+
Sbjct: 935 VVAPASVVPNWRNEIRKFAP-SLNVLILNSADDRAAMIKKAKQGDIVLATYAMLNINEAE 993
Query: 308 MIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPY 362
+IEQ+W ++ +DE+H ++ +K + +++A KR V+L+GTP LS +
Sbjct: 994 LIEQEWNVICLDEAHTIKNPTTKMSKSAMKLRA--------KRKVILTGTPIQNHLSELW 1045
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++F IN PGLLG A F K Y + ++G + + S+ ++L + L +
Sbjct: 1046 NLFQFIN---PGLLGSAD-AFKKKY--ILPIEGDRNK-----SRQIQLRK----LISPFL 1090
Query: 423 IRRLKQHLLVQLPPKRRQIIRLL------LKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+RR K ++ +LP K +++R + + R E+ A+A V
Sbjct: 1091 LRRTKGEVIEELPEK-NEVVRPVELSDTEMARYELQRAQAEAMV---------------- 1133
Query: 477 SDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADID----VNPRSN 531
E + + + L +I+ ++L + ++W + S A ID +N N
Sbjct: 1134 --EVEKNVSVSTLAEITRLRQLACSTALVDKKWEGV-----SSKTLAFIDLAESLNDSGN 1186
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
+ ++F+ +++ + + + ++ +DG+T + R+ V FQ + +I + A
Sbjct: 1187 RALVFSQFTSYFAEIKKMMDKTHLPYLYLDGSTPMKKREQLVREFQ-EGDCPFFLISLKA 1245
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+GL+ + A V+ L+ +P++ QA DRA+R GQ V +Y A+ T +E
Sbjct: 1246 GGLGLNLTGANYVIHLDPWWNPAIEQQATDRAYRIGQEQDVTVYRLIAQHTIEE 1299
>gi|34495520|ref|NP_899735.1| SWI/SNF family helicase [Chromobacterium violaceum ATCC 12472]
gi|34101375|gb|AAQ57744.1| probable SWI/SNF family helicase [Chromobacterium violaceum ATCC
12472]
Length = 910
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 218/465 (46%), Gaps = 53/465 (11%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P +L + P+QL+G + R G CL AD+MGLGKT+Q +++ G L
Sbjct: 448 EVPATLNATLRPYQLQGFAWMARLAHWGVGACL-ADDMGLGKTVQTLSLLLTRAHLGPQL 506
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
V P + L+W E R+ P + L H++ + +VV+SY +L R ++
Sbjct: 507 AVAPTSVALNWLAEAARFAP-----SLRLRAYHQHRRLDDVGPGDLVVVSYGLLQREAEA 561
Query: 308 MIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ WA ++DE+ ++ S+R + ++A +AA SGTP + +++
Sbjct: 562 FCDVHWASAVLDEAQAIKNPQSQRAQVAQSLRADFRLAA--------SGTPVENHLGELW 613
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ PGLLG F + Y Q D R +L L+ Q ++RR
Sbjct: 614 SLFRFIAPGLLGNLA-QFEQRYA----------QPIADGDDTAR-AQLKALI-QPYLLRR 660
Query: 426 LKQHLLVQLPPKRR--QIIRLLLKRSEIVSAKAAVGVINDSEKD-ATNDKTPKDSDEHDD 482
K+ +L +LPPK ++I L + + A + +E D A +T + E
Sbjct: 661 TKREVLTELPPKTETTRLIELSEQERHVYEAMRQEALARVAEADPAAGGQTMQALAELTR 720
Query: 483 SGACCRLGKISYQE--LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
C K++ + L +KL+ F E I E ++ +K ++F+ +
Sbjct: 721 LRRFCCHPKLTQPDSALPASKLAAFAE-------ICE-------ELLDNGHKALVFSQFV 766
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
L V E + ++G+ F +DG T R R++++ +FQ + + + +I + AGG GL+ ++
Sbjct: 767 DHLALVAEHLRQRGVRFHYLDGGTPSRQRKASMDAFQ-AGDGDLFLISLKAGGTGLNLTA 825
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRA+R GQ V +Y A T +E
Sbjct: 826 ADYVIHLDPWWNPAVEDQASDRAYRMGQQRPVTVYRLVAAGTIEE 870
>gi|189521245|ref|XP_696641.3| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Danio rerio]
Length = 2063
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 125/508 (24%), Positives = 220/508 (43%), Gaps = 120/508 (23%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ RF +G ++ADEMGLGKT+Q I + G LV P +
Sbjct: 754 YQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLFKEGHTKGPFLVSAPLSTII 813
Query: 257 SWAEELERWLP---------------------FCLPADIHLVFG-------HRNNPVHLT 288
+W E E W P F D V G R P+
Sbjct: 814 NWEREFEMWAPDFYVVTYTGDKDSRAIIRENEFTF--DDTAVKGGKKAFKLRREAPIKF- 870
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V++ SY ++ + + DWA L+VDE+H ++ ++ + + + D K+
Sbjct: 871 ---HVLLTSYELVTIDQNVLKSIDWACLVVDEAHRLK----NNQSKFFRRLNDY--KIDH 921
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
+LL+GTP + ++FH +N L P ++G+ + F D SK
Sbjct: 922 KLLLTGTPLQNNLEELFHLLNFLTPNRFN--------------NLEGFLEE-FADISKED 966
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAK 455
++++L+ LL M+RRLK + +P K I+R +L + E +++K
Sbjct: 967 QIKKLHDLLGPH-MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKFILTRNFEALNSK 1025
Query: 456 AA------VGVINDSEK-----------DATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
+ ++ D +K A KTP SGA Y+ +G
Sbjct: 1026 GGGNQVSLLNIMMDLKKCCNHPYLFPVAAAEAPKTP--------SGA--------YEGVG 1069
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
+ K SG + + + ++ + + + +++++F+ K+LD +++F+ +G +
Sbjct: 1070 LTKASG--KLMLLQKMLRK--------LKEQGHRVLVFSQMTKMLDLLEDFLDSEGYKYE 1119
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
RIDG RQ A+ F V+ ++ AGG+G++ ++A V+ + +P +
Sbjct: 1120 RIDGGITGALRQEAIDRFNAPGAVQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDI 1179
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA RAHR GQ + V IY F + + +E
Sbjct: 1180 QAFSRAHRIGQANKVMIYRFVTRASVEE 1207
>gi|225560239|gb|EEH08521.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 974
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 168/652 (25%), Positives = 274/652 (42%), Gaps = 96/652 (14%)
Query: 195 KSLLDVIL-PF--------QLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAIA 237
K ++DV+L P Q EGV+F G+R G ++ADEMGLGKTLQ IA+
Sbjct: 301 KQIVDVVLDPLLAKHLREHQREGVKFLYECVMGMRSFNGEGAILADEMGLGKTLQTIALI 360
Query: 238 ACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
+ I L+VCP L +W +E +W L + VF L
Sbjct: 361 WTLLKQNPIYEAQPVVKKALIVCPVTLIDNWKKEFRKW----LGNERVGVFVADAKRTRL 416
Query: 288 TRFP-----RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLD 341
T F V++I Y L +++ + + ++I DE H + RT + + +A+
Sbjct: 417 TDFTMGKSYSVMIIGYERLRTVQEELSKGSGIDIVIADEGHRM----RTVQNKSAQAIQS 472
Query: 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
+ KRIV LSGTP + + F ++ + PGLLG K F K + G L
Sbjct: 473 LNTS-KRIV-LSGTPIQNDLTEFFAMVDFVNPGLLGTFKM-FMKEFEGPIVKSRQPGALE 529
Query: 402 QDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPK------------RRQIIRLLLK- 447
+D KG R EEL L ++RR LL LPPK ++ I +L
Sbjct: 530 KDIEKGEARSEELTN-LTSLFILRRTADILLKYLPPKTEYVLFCNPTSSQKNIYHYVLSS 588
Query: 448 ---RSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502
+ + ++++A+ +I +K ++ + P++SD+ +S LG A +
Sbjct: 589 PIFQCALGNSESALQLITILKKLCNSPSLLKPRNSDQTPNS------------TLG-ALI 635
Query: 503 SGFREWLSIHPVIAESDGAADIDV------NPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
S + H A S +D + S K+++ +++ LD + F++ +
Sbjct: 636 SSLPPTVLRHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLP 695
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKI--AIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
F+R+DG+T P RQ V F S+ + ++ AGG GL+ A ++ ++ +P+
Sbjct: 696 FLRLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNLIGASRLILFDVDWNPA 755
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
+QA R HR GQ +Y K +E WQ + S + K Q
Sbjct: 756 TDIQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMDQKTGVSQFSRE 815
Query: 675 EGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEI---TAK 731
E + + T + +L Q + ++ K + SE SD + ++ DEI T
Sbjct: 816 ELRDLFRLDEGTTCQTHELIGCQCGGRGEL-DISKSDKQSEVSDVDSEDSEDEIIDFTKL 874
Query: 732 MNDKLLEESKTDHSPTETDDHHNNVS------QYTG-RIHLYSCVPGTDSRP 776
+ L+ +++ T N S QYT L C P D P
Sbjct: 875 IKASRLQALNSENMSTNRRKSRNEKSKMLSLMQYTHIDPSLLCCAPSLDKSP 926
>gi|347541744|ref|YP_004849171.1| SNF2 family DNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345644924|dbj|BAK78757.1| SNF2 family DNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 1370
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 144/523 (27%), Positives = 239/523 (45%), Gaps = 81/523 (15%)
Query: 137 PVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKS 196
P+L L+ AG W E+L+ G + P P L E+ D
Sbjct: 877 PLLAELEQEAGQFEADAAWR-----EQLAALASLGDYQPTPPSTLQAELRD--------- 922
Query: 197 LLDVILPFQLEG-------VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+QLEG R+G+ G CL AD+MGLGKT+Q +A+ AG LVV
Sbjct: 923 -------YQLEGYAWLARLARWGV---GACL-ADDMGLGKTVQTLALLLERAPAGPQLVV 971
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLHRLRKSM 308
P + L+W E R+ P V ++ T P +VV+SY +L + +
Sbjct: 972 APTSVALNWLAEAARFAPTL------KVRSYQQQRALDTLAPFDLVVVSYGLLQQDADAF 1025
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +++DE+ + + + + +AVL + A K + SGTP + +++
Sbjct: 1026 AAVPWTSVVLDEAQAI----KNAGTKRAQAVLGLQAGFK--LAASGTPVENHLGELWSLF 1079
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L PGLLG ++ F + + V +G K R + L L+ Q ++RR K
Sbjct: 1080 RFLNPGLLG-SQERFNQRFA-VPVERG---------DKNAR-KALKTLI-QPFILRRTKS 1126
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEHDDSG 484
+L +LPP+ ++ L E+ +A AV + D+ + N ++
Sbjct: 1127 QVLDELPPRTEITFKVALSGDELHLYEALRQQAVDKL-DALGEEDNKPLKVLAEITRLRR 1185
Query: 485 ACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
CC RL + EL +KL F E AD ++ R +K ++F+ +
Sbjct: 1186 FCCHPRLA-LPDSELAGSKLKAFAE-------------IADELLDNR-HKALVFSQFVDH 1230
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L V+ ++ E+GI + +DG+T R+R++ V +FQ + + + +I + AGG GL+ ++A
Sbjct: 1231 LAIVRAWLDERGIAYQYLDGSTPARERKARVDAFQ-AGQGDLFLISLKAGGTGLNLTAAD 1289
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DRAHR GQ V +Y A+ T +E
Sbjct: 1290 YVIHLDPWWNPAVEDQASDRAHRMGQQRPVTVYRLVAEHTIEE 1332
>gi|357403678|ref|YP_004915602.1| Non-specific serine/threonine protein kinase [Methylomicrobium
alcaliphilum 20Z]
gi|351716343|emb|CCE22003.1| Non-specific serine/threonine protein kinase [Methylomicrobium
alcaliphilum 20Z]
Length = 1412
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 232/459 (50%), Gaps = 63/459 (13%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKT+QA+A+ G L++ P + ++W E R+ P P +
Sbjct: 974 GACL-ADDMGLGKTIQALALLVDKAPNGPSLIIAPTSVCMNWESEARRFAPTLNP----I 1028
Query: 277 VFGHRNNPVHLTRFPR--VVVISYTMLHRLRKS-MIEQ-DWALLIVDESHHVR-CSKRTS 331
+FG + L +++ SY +L + + + M+ + + + I+DE+ ++ + R S
Sbjct: 1029 LFGSGDRQRKLDSLGSFDLLICSYGLLQQEQAAEMLSKIPFQIAILDEAQAIKNIATRRS 1088
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
+ +++ A+ + V+++GTP L +++F IN PGLLG + F K +
Sbjct: 1089 Q-----GAMNLQAEFR--VIMTGTPLENHLGELWNLFRFIN---PGLLGSLE-QFNKRFA 1137
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR 448
G + +D S+ R ++L L+ Q ++RR K +L +LPPK + + +
Sbjct: 1138 ---------GPIERDRSQEAR-QQLKKLI-QPFILRRTKTQVLQELPPKTEIPVYVEMSG 1186
Query: 449 SEIVSAKA----AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI--AKL 502
E+ +A ++ ++N + A + +CC +++ ++ + +KL
Sbjct: 1187 EEMAFYEALRRESLEILNSTGSQAGAKHLQILAAITKLRRSCCNT-RLANADIALPSSKL 1245
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDG 562
+ F E + ++ +K ++F+ + L ++++I ++GIG+ +DG
Sbjct: 1246 AAFGEIVD--------------ELLDNKHKALVFSQFVDHLQLIKDYIEQRGIGYQYLDG 1291
Query: 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR 622
+T ++R+ V +FQ + ++ +I + AGGVGL+ ++A V+ ++ +P++ QA DR
Sbjct: 1292 STQAKERKKCVDAFQ-RGDGELFLISLKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDR 1350
Query: 623 AHRRGQTSAVNIYIFCAKDTTDE------SHWQNLNKSL 655
AHR GQ V IY AK+T +E SH ++L SL
Sbjct: 1351 AHRMGQQRPVTIYRMIAKNTIEEKIVALHSHKRDLADSL 1389
>gi|17232392|ref|NP_488940.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
gi|17134038|dbj|BAB76599.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
Length = 869
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 223/470 (47%), Gaps = 57/470 (12%)
Query: 192 KLPKSLLDVILPFQLEG----VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP + + +Q++G R G CL AD+MGLGKT+QA+A+ G L
Sbjct: 403 ELPSTFGAELRDYQMDGFCWLARLAHWGVGACL-ADQMGLGKTVQALAVILRNAHEGPSL 461
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
++ P + ++W E +++ P I +R + + ++V SY +L + +
Sbjct: 462 IIAPTSVCMNWVSEAQKFAPTL--NIIQFTGANRQKLLDGLQPLDMLVCSYGLLQQEEVA 519
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ + W +++DE+ ++ +KR+ +A +++ A K +L +GTP L
Sbjct: 520 QMLSGVQWQTIVLDEAQAIKNMTTKRS------QAAMNLKANFK--LLTTGTPIENHLGE 571
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++F IN PGLLG + F + + ++ YQ + ++ K L Q
Sbjct: 572 LWNLFRFIN---PGLLGSFE-SFNQRFA--IPIEKYQDKQARNKLKK---------LIQP 616
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKD 476
++RR K +L +LP + ++ + L R E +A A+ ++DS +A N
Sbjct: 617 FLLRRTKNQVLEELPSRTEILLHVELSREEKAFYEALRRQAISKLSDSNAEAGNKHLQVL 676
Query: 477 SDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
++ ACC + EL +KL F E L ++ +K ++
Sbjct: 677 AEIMKLRRACCNPSLVMPDTELSSSKLQLFGEVLG--------------ELLENRHKALV 722
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + L ++ ++ ++GI + +DG+T +R+ V +FQ N + +I + AGG G
Sbjct: 723 FSQFVDHLHIIRNYLDKQGINYQYLDGSTSVSERKKRVDAFQAGNG-DVFLISLKAGGTG 781
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ ++A V+ + +P++ QA DRAHR GQ V IY AKDT +E
Sbjct: 782 LNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEE 831
>gi|402828491|ref|ZP_10877378.1| bacterial SNF2 helicase associated [Slackia sp. CM382]
gi|402286299|gb|EJU34774.1| bacterial SNF2 helicase associated [Slackia sp. CM382]
Length = 1078
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 219/488 (44%), Gaps = 73/488 (14%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAA 238
+ +DE ++P L + P+Q G R+ L GG ++ADEMGLGKTLQ I
Sbjct: 600 KTIDEDAYRVPVGLAATLRPYQEAGFRWMSHLMDLGFGG--ILADEMGLGKTLQLI---- 653
Query: 239 CFISA--------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
C + A G LVVCPA L +WA E ER+ P + +V G + R
Sbjct: 654 CLLLARRDEARATGPSLVVCPASLVYNWAAEFERFAP---DLRVAVVAGDADVRAEARRG 710
Query: 291 PR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V + SY +L R + + +DE+ +V+ + T VKA+ D A ++
Sbjct: 711 ADADVFITSYDLLKRDIEDYAGMRFWCEALDEAQYVK-NHETQAAASVKAI-DAAHRIA- 767
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
L+GTP +R +++ + L PGLLG Y + + + G D
Sbjct: 768 ---LTGTPIENRVSEVWSIFDYLMPGLLGS--YTRFRDRFEAPIMDG-------DEEAAA 815
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
RL L ++RR K +L LP K I+ L+ + + + +
Sbjct: 816 RLSAL----VGPFILRRRKADVLTDLPEKWESIVYARLEGEQ--------RALYQAHEQM 863
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD----GAADI 524
K + +E DDS + + +A+L+ R+ +++ P + +D GA +
Sbjct: 864 LRMKIAHEGEEGDDSRSKVEI---------LAELTRLRQ-IALDPSLLYADYRGGGAKEQ 913
Query: 525 DVN-------PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
+ KM++F+ LD + +SE+G+ I G+T + R + V +F
Sbjct: 914 AIMDTIASCIASGEKMLVFSQFTSYLDIIGAKLSEQGVKHYVITGSTPKKKRLALVDAFN 973
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+++ I +I + AGG GL+ + A V+ + + + QA DRAHR GQT VN+Y
Sbjct: 974 -ADDTPIFLISLKAGGTGLNLTGASVVLHADPWWNAAAQNQATDRAHRMGQTRIVNVYRV 1032
Query: 638 CAKDTTDE 645
AKDT +E
Sbjct: 1033 IAKDTIEE 1040
>gi|240278991|gb|EER42497.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H143]
gi|325090250|gb|EGC43560.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H88]
Length = 974
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 155/594 (26%), Positives = 256/594 (43%), Gaps = 86/594 (14%)
Query: 195 KSLLDVIL-PF--------QLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAIA 237
K ++DV+L P Q EGV+F G+R G ++ADEMGLGKTLQ IA+
Sbjct: 301 KQIVDVVLDPLLAKHLREHQREGVKFLYECVMGMRSFNGEGAILADEMGLGKTLQTIALI 360
Query: 238 ACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
+ I L+VCP L +W +E +W L + VF L
Sbjct: 361 WTLLKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW----LGNERVGVFVADAKRTRL 416
Query: 288 TRFP-----RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLD 341
T F V++I Y L +++ + + ++I DE H + RT + + +A+
Sbjct: 417 TDFTMGKSYSVMIIGYERLRTVQEELSKGSGIDIVIADEGHRM----RTVQNKSAQAIQS 472
Query: 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
+ KRIV LSGTP + + F ++ + PGLLG K F K + G L
Sbjct: 473 LNTS-KRIV-LSGTPIQNDLTEFFAMVDFVNPGLLGTFKM-FMKEFEGPIVKSRQPGALE 529
Query: 402 QDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPK------------RRQIIRLLLK- 447
+D KG R EEL L ++RR LL LPPK ++ I +L
Sbjct: 530 KDIEKGEARSEELTN-LTSLFILRRTADILLKYLPPKTEYVLFCNPTSSQKNIYHYVLSS 588
Query: 448 ---RSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502
+ + ++++A+ +I +K ++ + P++SD+ +S LG A +
Sbjct: 589 PIFQCALGNSESALQLITILKKLCNSPSLLKPRNSDQTPNS------------TLG-ALI 635
Query: 503 SGFREWLSIHPVIAESDGAADIDV------NPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
S + H A S +D + S K+++ +++ LD + F++ +
Sbjct: 636 SSLPPTVLRHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLP 695
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKI--AIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
F+R+DG+T P RQ V F S+ + ++ AGG GL+ A ++ ++ +P+
Sbjct: 696 FLRLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNLIGASRLILFDVDWNPA 755
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAV 674
+QA R HR GQ +Y K +E WQ + S + K Q
Sbjct: 756 TDIQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMDQKTGVSQFSRE 815
Query: 675 EGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEI 728
E + + T + +L Q + ++ K + SE SD + ++ DEI
Sbjct: 816 ELRDLFRLDEGTTCQTHELIGCQCGGRGEL-DISKSDKQSEVSDVDSEDSEDEI 868
>gi|341878788|gb|EGT34723.1| hypothetical protein CAEBREN_12212 [Caenorhabditis brenneri]
Length = 970
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 140/578 (24%), Positives = 258/578 (44%), Gaps = 85/578 (14%)
Query: 204 FQLEGVRFGLRRGGR---CLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLS 257
+QL GV++ + + ++ DEMGLGKT+Q +A + G L+V P+ +
Sbjct: 391 YQLVGVKWLIMMNSKELNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIEN 450
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-------VVVISYTML-HRLRKSMI 309
W E +W C + +G ++ HL + V++ +Y M+ +
Sbjct: 451 WIGEFHKW---CPSLKLLTYYGSQDERKHLRHRVKKQKDNIDVILTTYNMVTSKSDDKKF 507
Query: 310 EQDWAL--LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++++L +I DE H ++ + E + ++ V K KR +LL+GTP + ++
Sbjct: 508 FKNFSLNYVIYDEGHMLK----NCDSERYRGLMKV--KGKRKILLTGTPLQN---NLIEL 558
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKT--VQGYQ--GQLFQDFSKGV----RLEELNVLLKQ 419
I++++ L + YC+ T +Q ++ G + K + R+EE +L Q
Sbjct: 559 ISLMYFVL-----FKVFNKYCEDITHLLQHFKQLGPALESKDKAMYQQDRIEEAKSIL-Q 612
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE------------KD 467
++RRLK +L LP K QII + +K+ + V V+ +SE +
Sbjct: 613 PYILRRLKNQVLSSLPKKSEQIIEVEMKKPQKALYDNIVEVLQNSEDVGDSYGSLMRLRQ 672
Query: 468 ATNDKTPKDSDEHDD-----SGACCRLGKISYQELGIAKLSGFREWLS---IHPV----- 514
A N + S+ D + C L + SY + +S WLS IH +
Sbjct: 673 AANHPLLRRSEYTDQKLDKIAKQLC-LREKSYADKKWQHVSEDLAWLSDIKIHQLCEKFR 731
Query: 515 ----------IAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
+A G + ++ + +K++IF+ +LD ++ +++ +G +
Sbjct: 732 CTSKFLLNEELALRSGKCEQLDKMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYK 791
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
R+DG T DRQ ++ F LS ++ + ++ AGG+G++ +SA +++ ++ +P Q
Sbjct: 792 RLDGQTPVLDRQEMINEFNLSKDLFVFLLSTKAGGLGINLTSANHIIIHDIDFNPYNDKQ 851
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVS 678
AEDR HR GQ V++ +K T + K L+ T+G L E A+ +
Sbjct: 852 AEDRCHRMGQEKDVHVTRLVSKGTVEIGMLALAKKKLQLEKQVTDGVKGQLDEDALRELK 911
Query: 679 YLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEA 716
E DK + L V S +F ++ ES+ A
Sbjct: 912 EEEGGDKIEGKDVSKLLSSVISG-RFDDVEDSGESNSA 948
>gi|440753863|ref|ZP_20933065.1| SNF2 family N-terminal domain protein [Microcystis aeruginosa
TAIHU98]
gi|440174069|gb|ELP53438.1| SNF2 family N-terminal domain protein [Microcystis aeruginosa
TAIHU98]
Length = 431
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 129/472 (27%), Positives = 221/472 (46%), Gaps = 61/472 (12%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKTLQA+A+ S G L + P + L+W E ER+ P I L G R
Sbjct: 1 MGLGKTLQALAVILTRASEGPTLAIAPTSVCLNWISEAERFAPTL--NIIQLGTGDRQAL 58
Query: 285 VHLTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVL 340
+ + ++V SY +L + + + +W +++DE+ ++ +KR+ KA +
Sbjct: 59 LDRLQPFDLLVCSYGLLQQEEVATMLAGVEWRTIVLDEAQAIKNFSTKRS------KAAM 112
Query: 341 DVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ 397
++ K I +GTP L +++F IN PGLLG + F + +
Sbjct: 113 NLRGDFKLIT--TGTPIENHLGELWNLFRFIN---PGLLGSLE-SFDRRFATP------- 159
Query: 398 GQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA- 456
+ + E+L L++ ++RR K +L +LPP+ ++ + L E +A
Sbjct: 160 ---IEKYGDKTAREQLKKLVR-PFLLRRTKNQVLAELPPRTEILVPIELSVEEKAFYEAL 215
Query: 457 ---AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIH 512
A+ +++S+ A ++ ACC ++ +L +KLS F E L
Sbjct: 216 RRRALEKLSESDSTAGAKHLQVLAEIMKLRRACCHPQLVAPDLDLAGSKLSRFGEILD-- 273
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
D+ +K ++F+ + L ++ ++ ++ I + +DG+T DRQ
Sbjct: 274 ------------DLLDNQHKALVFSQFVDHLAIIRSYLEQRQIKYQYLDGSTPASDRQKQ 321
Query: 573 VHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
V +FQ + E + +I + AGG GL+ ++A V+ L+ +P++ QA DRAHR GQ V
Sbjct: 322 VKAFQ-AGEGDVFLISLKAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQKRPV 380
Query: 633 NIYIFCAKDTTDES------HWQNLNKSLRCVSSATNGKY--DALQEIAVEG 676
IY AKDT +E H ++L SL + A+ GK D L + EG
Sbjct: 381 TIYRLVAKDTIEEKIVDLHHHKRDLADSLLEGTDAS-GKLSTDELLRLMAEG 431
>gi|426201922|gb|EKV51845.1| hypothetical protein AGABI2DRAFT_215383 [Agaricus bisporus var.
bisporus H97]
Length = 1428
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 124/521 (23%), Positives = 243/521 (46%), Gaps = 66/521 (12%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E I + P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ I
Sbjct: 533 ISEKIARQPNILVGGTLKEYQLKGLQWMVSLYNNKLNGILADEMGLGKTIQTISLVTFLI 592
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP---------VHLT 288
G LV+ P +W+ E +W P + ++ NP + +
Sbjct: 593 EVKRQRGPYLVIVPLSTMTNWSGEFAKWAPSVR------MIAYKGNPTQRRALQAELRMN 646
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
+F +V++ +Y + + R + + W +I+DE H ++ ++ ++ L +
Sbjct: 647 QF-QVLLTTYEYIIKDRPHLSKIKWVHMIIDEGHRMKNTQ-----SKLVQTLTTYYHSRY 700
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YD--FAKTYCDVKTVQGYQGQLFQDFS 405
++L+GTP + +++ +N + P + K +D F + + T G + +L ++ +
Sbjct: 701 RLILTGTPLQNNLPELWALLNFVLPRIFNSVKSFDEWFNTPFANSGT--GEKIELNEEEA 758
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAKAAVGVIND 463
+ + L+ +L+ ++RRLK+ + +LP K ++I++ + +S++ +I D
Sbjct: 759 LLI-IRRLHKVLR-PFLLRRLKKDVESELPDKVEKVIKIRMSALQSQLYKQMKKYKMIAD 816
Query: 464 SEK---DATNDKTPKDSDEHDDSGACC-----------RLGKISYQELGIAKLSGFREWL 509
++ A K S+E C ++ Y + + + SG E L
Sbjct: 817 GKETKGKAAGMKGLGLSNELMQLRKICQHPFLFESVEDKISPSGYVDDKLIRTSGKIELL 876
Query: 510 S-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + P + ++++IF KV+D +++F+ +G ++R+DG T +
Sbjct: 877 NRVLPKFFST-----------GHRVLIFFQMTKVMDIMEDFLKMQGWKYLRLDGGTKTEE 925
Query: 569 RQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
R S V F ++ E K+ I+ AGG+GL+ +A V+ + +P LQA+DRAHR G
Sbjct: 926 RASFVQLFNATDSEYKVFILSTRAGGLGLNLQTADTVIIFDSDWNPHADLQAQDRAHRIG 985
Query: 628 QTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN-GKYD 667
QT AV I F + + +E+ +Q L GK+D
Sbjct: 986 QTKAVLILRFITEKSVEEAMYQRARFKLDIDDKVIQAGKFD 1026
>gi|224826766|ref|ZP_03699866.1| Non-specific serine/threonine protein kinase [Pseudogulbenkiania
ferrooxidans 2002]
gi|224600986|gb|EEG07169.1| Non-specific serine/threonine protein kinase [Pseudogulbenkiania
ferrooxidans 2002]
Length = 1370
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 143/523 (27%), Positives = 239/523 (45%), Gaps = 81/523 (15%)
Query: 137 PVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKS 196
P+L L+ AG W E+L+ G + P P L E+ D
Sbjct: 877 PLLAELEREAGQFEADAAWR-----EQLAALASLGDYQPTPPSTLQAELRD--------- 922
Query: 197 LLDVILPFQLEG-------VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
+QLEG R+G+ G CL AD+MGLGKT+Q +A+ AG LVV
Sbjct: 923 -------YQLEGYAWLARLARWGV---GACL-ADDMGLGKTVQTLALLLERAPAGPQLVV 971
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLHRLRKSM 308
P + L+W E R+ P V ++ T P +VV+SY +L + +
Sbjct: 972 APTSVALNWLAEAARFAPTL------KVRSYQQQRALDTLAPFDLVVVSYGLLQQDADAF 1025
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +++DE+ + + + + +AVL + A K + SGTP + +++
Sbjct: 1026 AAVPWTSVVLDEAQAI----KNAGTKRAQAVLGLQAGFK--LAASGTPVENHLGELWSLF 1079
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L PGLLG ++ F + + V +G K R + L L+ Q ++RR K
Sbjct: 1080 RFLNPGLLG-SQERFNQRFA-VPVERG---------DKNAR-KALKALI-QPFILRRTKS 1126
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPKDSDEHDDSG 484
+L +LPP+ ++ L E+ +A AV + D+ + N ++
Sbjct: 1127 QVLDELPPRTEITFKVALSGDELHLYEALRQQAVDKL-DALGEQDNKPLKVLAEITRLRR 1185
Query: 485 ACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
CC RL + EL +KL F E IA+ ++ +K ++F+ +
Sbjct: 1186 FCCHPRLA-LPDSELAGSKLKAFAE-------IAD-------ELLENRHKALVFSQFVDH 1230
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L V+ ++ E+GI + +DG+T R+R++ V +FQ + + + +I + AGG GL+ ++A
Sbjct: 1231 LAIVRAWLDERGIAYQYLDGSTPARERKARVDAFQ-AGQGDLFLISLKAGGTGLNLTAAD 1289
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DRAHR GQ V +Y A+ T +E
Sbjct: 1290 YVIHLDPWWNPAVEDQASDRAHRMGQQRPVTVYRLVAEHTIEE 1332
>gi|168216008|ref|ZP_02641633.1| putative helicase [Clostridium perfringens NCTC 8239]
gi|182381656|gb|EDT79135.1| putative helicase [Clostridium perfringens NCTC 8239]
Length = 1065
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 237/512 (46%), Gaps = 103/512 (20%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 566 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 623
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P I LV G ++ + R
Sbjct: 624 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRIGLVHGSKSKRDKVLR 679
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 680 EFKRGLGIKIEEDNLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPA 739
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 740 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 782
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 783 -----TKERFRERFILDES---NLSELKYLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 833
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
K+ ++ S + N ++ +++K+ +D ++ SY L+
Sbjct: 834 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD-----------KINLFSY-------LTK 874
Query: 505 FREWLSIHPVIAESD---GAADI--------DVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
RE + + P + D G++ + D + K+++F+ VL ++E ++
Sbjct: 875 LRE-ICLDPSLVVPDYTGGSSKLTVVKEIVKDASESGKKILLFSQFTSVLQKIEEDFKKE 933
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
I ++ +DG T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P
Sbjct: 934 DISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNP 993
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ QA DRAHR GQ + V + AKDT +E
Sbjct: 994 AVEDQATDRAHRFGQENKVEVIKLVAKDTIEE 1025
>gi|409083027|gb|EKM83384.1| hypothetical protein AGABI1DRAFT_65925 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1428
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 124/521 (23%), Positives = 243/521 (46%), Gaps = 66/521 (12%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E I + P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ I
Sbjct: 533 ISEKIARQPSILVGGTLKEYQLKGLQWMVSLYNNKLNGILADEMGLGKTIQTISLVTFLI 592
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP---------VHLT 288
G LV+ P +W+ E +W P + ++ NP + +
Sbjct: 593 EVKRQRGPYLVIVPLSTMTNWSGEFAKWAPSVR------MIAYKGNPTQRRALQAELRMN 646
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
+F +V++ +Y + + R + + W +I+DE H ++ ++ ++ L +
Sbjct: 647 QF-QVLLTTYEYIIKDRPHLSKIKWVHMIIDEGHRMKNTQ-----SKLVQTLTTYYHSRY 700
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-YD--FAKTYCDVKTVQGYQGQLFQDFS 405
++L+GTP + +++ +N + P + K +D F + + T G + +L ++ +
Sbjct: 701 RLILTGTPLQNNLPELWALLNFVLPRIFNSVKSFDEWFNTPFANSGT--GEKIELNEEEA 758
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAKAAVGVIND 463
+ + L+ +L+ ++RRLK+ + +LP K ++I++ + +S++ +I D
Sbjct: 759 LLI-IRRLHKVLR-PFLLRRLKKDVESELPDKVEKVIKIRMSALQSQLYKQMKKYKMIAD 816
Query: 464 SEK---DATNDKTPKDSDEHDDSGACC-----------RLGKISYQELGIAKLSGFREWL 509
++ A K S+E C ++ Y + + + SG E L
Sbjct: 817 GKETKGKAAGMKGLGLSNELMQLRKICQHPFLFESVEDKISPSGYVDDKLIRTSGKIELL 876
Query: 510 S-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + P + ++++IF KV+D +++F+ +G ++R+DG T +
Sbjct: 877 NRVLPKFFST-----------GHRVLIFFQMTKVMDIMEDFLKMQGWKYLRLDGGTKTEE 925
Query: 569 RQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
R S V F ++ E K+ I+ AGG+GL+ +A V+ + +P LQA+DRAHR G
Sbjct: 926 RASFVQLFNATDSEYKVFILSTRAGGLGLNLQTADTVIIFDSDWNPHADLQAQDRAHRIG 985
Query: 628 QTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN-GKYD 667
QT AV I F + + +E+ +Q L GK+D
Sbjct: 986 QTKAVLILRFITEKSVEEAMYQRARFKLDIDDKVIQAGKFD 1026
>gi|384252115|gb|EIE25592.1| hypothetical protein COCSUDRAFT_46779 [Coccomyxa subellipsoidea
C-169]
Length = 1022
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 215/475 (45%), Gaps = 47/475 (9%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPA 252
++ +Q++G+ + + G ++ADEMGLGKTLQ I++ I +V+ P
Sbjct: 145 IMREYQMQGLNWLIHLYDNGINGILADEMGLGKTLQTISLLGYLQEYRGIHGPHMVIVPK 204
Query: 253 ILRLSWAEELERWLPFCLPADIH----LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W E +W P H R V + +F VVV SY M+ + +
Sbjct: 205 STLHNWINEFRKWCPSIRAVKFHGNQEERAYQREQTVAVGKFD-VVVTSYEMVIKEKNHF 263
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ W +I+DE+H ++ + + + K +L++GTP + ++++ +
Sbjct: 264 KKFHWRYIIIDEAHRIKNEN------SILSRVVRTFKTNYRLLITGTPLQNNLHELWALL 317
Query: 369 NMLWPGLLGKA-KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
N L P + A K+D + +V+ S+ + +L+ +L+ ++RRLK
Sbjct: 318 NFLLPEVFSSAEKFD---EWFNVQDKD----------SEAEVVSQLHKVLR-PFLLRRLK 363
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + SE+ K + + DA N +D
Sbjct: 364 SDVEKGLPPKKETILKIGM--SEM--QKKFYAALLQKDIDAING----GADRSRLLNIVM 415
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKV 542
+L K + + ++ S +D + R ++++IF+ ++
Sbjct: 416 QLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKLVLLDKLLPKLQSRDSRVLIFSQMTRL 475
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSA 601
LD ++++ +G + RIDGNT DR+S + F K I ++ AGG+G++ +A
Sbjct: 476 LDILEDYCLYRGYKYCRIDGNTSGEDRESQIDGFNAEGSEKFIFLLSTRAGGLGINLYTA 535
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLR 656
VV + +P + LQA DRAHR GQ V ++ FC +++ +E + K LR
Sbjct: 536 DIVVLFDSDWNPQMDLQAMDRAHRIGQKKEVQVFRFCVENSIEEKVIEKAYKKLR 590
>gi|449666890|ref|XP_002155441.2| PREDICTED: DNA excision repair protein ERCC-6-like, partial [Hydra
magnipapillata]
Length = 1025
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 212/490 (43%), Gaps = 56/490 (11%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISA---- 243
LP+ L + + +Q GVR+ GG ++ DEMGLGKT+Q I+ A + +
Sbjct: 258 LPRKLWNKLYKYQRVGVRWLWQLHAQEVGG--IVGDEMGLGKTIQVISFLAGLVYSKKGN 315
Query: 244 ---------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR----F 290
GS+L+VCPA + W E W P A +H +P+ L R
Sbjct: 316 NINNNKFGLGSVLIVCPATVMFQWVSEFHMWWPHFRVAILHSSGTFIGSPLTLIRAISKH 375
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK---VK 347
P +++ +Y + +K + + +W +I+DE H +R P+ A++ +A K
Sbjct: 376 PGILITTYNSVLNHKKELYKHNWQYVILDEGHKIR------NPD---ALITLACKQFNTS 426
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
++L+GTP + +++ + ++PG LG A+ + T+ GY
Sbjct: 427 HRLILTGTPMQNSLKELWSLFDFVYPGRLGTLPVFMAEFSIPI-TMGGYANASSLQVQAA 485
Query: 408 VRLEELNVLLKQTV---MIRRLKQHL--LVQLPPKRRQIIRLLLKR------SEIVSAKA 456
+ +LK T+ MIRR+K+ + + LP K QI+ L E +S++
Sbjct: 486 YK---CCCILKDTITPYMIRRMKKDVQQTLFLPTKSEQILFCKLTEEQKAIYKEFISSRD 542
Query: 457 AVGVINDSEKDATN-DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
++N K K K + D + K L A GF W +I
Sbjct: 543 VASILNGDMKIFPGLIKLRKICNHPDLVSLAAEVEKGKPASLDDASCYGF--WKRSGKMI 600
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
+ + +++++F ++LD ++ F+ ++R+DG T + R V
Sbjct: 601 VVENLLRMW--KHQGHRVLLFTQSKQMLDILEGFLKAAEHSYMRMDGTTSVKSRHGIVKK 658
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
F S + + ++ GG+GL+ +A V+ + +PS+ QA +R+ R GQ V IY
Sbjct: 659 FHESKNIFVFLLTTRVGGLGLNLIAANRVIIYDPDWNPSVDSQARERSWRIGQLKDVTIY 718
Query: 636 IFCAKDTTDE 645
T +E
Sbjct: 719 RLLTTGTIEE 728
>gi|378823155|ref|ZP_09845840.1| protein, SNF2 family, partial [Sutterella parvirubra YIT 11816]
gi|378598022|gb|EHY31225.1| protein, SNF2 family, partial [Sutterella parvirubra YIT 11816]
Length = 1054
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 214/476 (44%), Gaps = 49/476 (10%)
Query: 193 LPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI--- 246
LP+ L + P+Q G + LR G LIAD+MGLGKTLQ IA G
Sbjct: 563 LPQKLDATLRPYQERGYAWLMKNLRLGLGALIADDMGLGKTLQVIAAMTALKEDGEFKTQ 622
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
LVV P L +WA EL ++ P H G + + P V + SY L R
Sbjct: 623 KALVVVPTTLLANWARELAKFSPGLTVGTYH---GTKRKLPAPKKTPDVTLTSYGTLRRD 679
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
K+ + W LL++DE+ ++ ++ T++ VK+V K +++ +SGTP +R +
Sbjct: 680 AKTFASRKWRLLVLDEAQVIK-NRSTAQSIAVKSV-----KAPQVLAMSGTPVENRLMEY 733
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ ++ + P LLG ++ DF +T+ D + + + F + L M+R
Sbjct: 734 WSILSTVQPKLLG-SEADFRRTFAD-PIEREHDERAIAAFRR----------LTAPFMLR 781
Query: 425 RLKQ--HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
RLK ++ LP K L ++ K + + ++ K+A +KT + E
Sbjct: 782 RLKSDPKIISDLPEKNVLDHFTSLTPTQTALYKKTLDEMLEAMKEA--EKTER---EAAA 836
Query: 483 SGACCRLGKISYQELGIAKLSGFREWL--------SIHPVIAESDGAADIDV----NPRS 530
SG ++ + L + ++ ++ + P G A + +
Sbjct: 837 SGGDAEAARMKRKGLVLRLITALKQICNSPSQYQKTEAPTSDSGKGDALLAILGQCRDAE 896
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGF-VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
K++IF ++ + +Q++I G G + G + R + V FQ ++ II +
Sbjct: 897 RKVLIFTQFREMGEKLQDWIEAAGFGRPAFLHGGVPVKARMAMVDKFQTDRTERVMIISL 956
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A VV +L +P++ QA DRA+R GQ V +Y F T +E
Sbjct: 957 KAGGTGLNLTAASAVVHYDLWWNPAVEAQATDRAYRIGQRRDVLVYRFVTAGTFEE 1012
>gi|14091823|gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
regulator of chromatin [Oryza sativa]
gi|15528681|dbj|BAB64747.1| putative DNA-dependent ATPase [Oryza sativa Japonica Group]
Length = 1122
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 145/603 (24%), Positives = 262/603 (43%), Gaps = 98/603 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 234 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 293
Query: 257 SWAEELERWLPFCLPADIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W +E++R+ P RN N + +F V V S+ M + + ++
Sbjct: 294 NWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFD-VCVTSFEMAIKEKTTLKRFS 352
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N L
Sbjct: 353 WRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLNFLL 406
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P + + A+T+ + + G Q ++ Q K +R ++RRLK +
Sbjct: 407 PEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLKSDV 451
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
LPPK+ I+++ + + + +A + KD + + G RL
Sbjct: 452 EKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVINAGGERKRLL 496
Query: 491 KISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
I+ Q E G +G E L + + R ++++IF
Sbjct: 497 NIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLVENAGKMVLLDKLLPKLKDRDSRVLIF 554
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVG 595
+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+G
Sbjct: 555 SQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLG 614
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E + K L
Sbjct: 615 INLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 674
Query: 656 ----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDLTLD 696
R T K D LQ + D T DR E+ T +
Sbjct: 675 ALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAE 734
Query: 697 QVASSDQFQE---LMKVPESSEASDFRAINTNDEITAKMN-----DKLLEESKTDHSPTE 748
A +F E K+ +++E DF +D+ + +N D L EE+K D
Sbjct: 735 LDAKMKKFTEDAIKFKMDDTAELYDF----DDDKFGSLLNSIYILDFLKEENKLDFKKLV 790
Query: 749 TDD 751
+D+
Sbjct: 791 SDN 793
>gi|407862998|gb|EKG07817.1| transcription activator, putative [Trypanosoma cruzi]
Length = 1113
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 133/506 (26%), Positives = 221/506 (43%), Gaps = 91/506 (17%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAA----CFISAGSI 246
P + + P+Q+EGV + L R ++ADEMGLGKTLQ IA A + G
Sbjct: 161 PSYIRGKLRPYQIEGVNWLLGLFSRNINGILADEMGLGKTLQTIATLAYLKFTYGLPGPH 220
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR----VVVISYTM 300
LVVCP + +W EL++W P H R + HL + ++V ++ M
Sbjct: 221 LVVCPKSVMGNWYRELKQWCPALNAFKFHGTSEIRPQLIKSHLQPHDKLKYDIIVTTFEM 280
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + W L+VDE+H ++ +E V LD R+++ +GTP +
Sbjct: 281 VIEELPTFKRIHWQYLVVDEAHKLK-----NEEGRVHTALDSLNTNHRLII-TGTPLQNN 334
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++ ++ L P L A + + + D + Q QD + + ++ L
Sbjct: 335 LKELWALLHFLAPRLFENA--ESFEAWFDTASGQ-------QDSNAMSNMHKILAPL--- 382
Query: 421 VMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAAVG-------- 459
MIRR+K + +PPK R+ + +L K +E ++ KA+ G
Sbjct: 383 -MIRRIKSEVSTGIPPKKEIYVACKLTKTQRKWYMHVLAKDAEALN-KASGGSMSSLTNI 440
Query: 460 ------VINDSEK-DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLS 510
VIN D + P +DE SG L K+ Y +L +E
Sbjct: 441 MMNLRKVINHPYMMDGGEEGPPFITDERIVKHSGKMMILDKLLY------RLRREKE--- 491
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
+K++IF+ +LD ++++ +G RIDGNT DR
Sbjct: 492 ------------------EKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDRD 533
Query: 571 SAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
+ + +F N + I ++ AGG+G++ +A +VV + +P + LQA+DRAHR GQ
Sbjct: 534 AQMAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVIYDSDWNPQMDLQAQDRAHRIGQK 593
Query: 630 SAVNIYIFCAKDTTDESHWQNLNKSL 655
V +Y F + T +E ++ K L
Sbjct: 594 RVVRVYRFITEGTVEEKIYRRALKKL 619
>gi|448103575|ref|XP_004200069.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
gi|359381491|emb|CCE81950.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
Length = 857
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/521 (24%), Positives = 228/521 (43%), Gaps = 74/521 (14%)
Query: 178 PEHLSDEVVDEMIGKLPKS--------LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGK 229
P + D VVD ++ K + L D ++ F+ +FG G L+ADEMGLGK
Sbjct: 219 PNKVVDVVVDPILSKHLRPHQRDAVCFLYDCVMGFK----KFG---GNGALLADEMGLGK 271
Query: 230 TLQAIAIAACFISAG-----------SILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278
TL IA+ + +L+ CP L +W++E ++WL + L
Sbjct: 272 TLTTIAVIWTLLKQNPYLEVDSPVCRKVLITCPVSLIQNWSKEFKKWLGLNRIGILALNS 331
Query: 279 GHR--NNPVHL-----TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
++ V + TR +V++ISY + RK +++ + LL+ DE H ++ S
Sbjct: 332 KQNAADDKVQISSFGKTRVYQVMIISYEKVLTCRKELMDLNIDLLVCDEGHRLK-----S 386
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY---DFAKTYC 388
+V L+ ++K +LL+GTP + Y+ ++ +N + PG+LG + +F K
Sbjct: 387 ATNKVMQTLN-QMQIKSKILLTGTPIQNDLYEFYNIVNFINPGVLGTPSHFQKEFVKPIS 445
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL---------KQHLLVQLPPKRR 439
+ + ++ DF + + EL L +Q V+ R K +++ PP
Sbjct: 446 RARDM-NCTNKVILDFGEE-KSNELLTLTRQFVLRRSSSVLSHVLPDKTDIIIFCPPSNL 503
Query: 440 QIIRLLLKRSEI---------VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
Q++ +S S ++G+I +K + + ++ C
Sbjct: 504 QLLMFKAIQSSQAFNSFLQSQTSVNNSLGIITVMKKLCNSPSLLANDKLFNEIIKSCPEP 563
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
KI + L SG L P++ E + K+++ +++ + LD + +
Sbjct: 564 KIDLESLHKRYSSGKVNLLI--PLLLE--------ICQLKEKIVLISNYTQTLDLFENVL 613
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA--GGVGLDFSSAQNVVFLE 608
+ I F+R+DG+T + R S V+ F S K ++ ++A GG GL+ A ++ +
Sbjct: 614 RKLNISFLRLDGSTQGKSRDSIVNEFNNSTFEKASVFLLSAKSGGFGLNLIGASRLILFD 673
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
+PS+ LQA R HR GQ V IY DE +Q
Sbjct: 674 NDWNPSVDLQAMARIHRDGQKKPVFIYRLFTTGCIDEKIFQ 714
>gi|393910430|gb|EJD75877.1| SNF2 family domain-containing protein [Loa loa]
Length = 1471
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 218/522 (41%), Gaps = 46/522 (8%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAA---CFISAGSILVVCPAILRLS 257
+Q EG+R F G ++AD+MGLGKTLQ + + A C +L+VCP L
Sbjct: 870 YQQEGIRWMSFLEEYGLSGILADDMGLGKTLQTLCLLAMKICHKPQAKVLIVCPPTLVNH 929
Query: 258 WAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
W E ++ P P H + G + + + +V V+SY + R + +W +
Sbjct: 930 WCAEWSKFFPTLSP--FHKIEEGCKEKKLSMNNPQKVTVMSYNTV-RFCTYVQNIEWYYM 986
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE H +R + KA+ ++ A+ + ++LSGTP + P D++ L PG L
Sbjct: 987 ILDEGHMIR----NPTTQLFKALTNIKAQNR--LILSGTPVQNTPADLWALFQFLMPGYL 1040
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQTVMIRRLKQHLLVQLP 435
G + F + + Q+ +G LE L+ + VM RRLK +L LP
Sbjct: 1041 GTMR-QFKLAFLNAINGSRNVNASAQEIKEGQDALERLHKSILPFVM-RRLKTDVLEDLP 1098
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC----RLGK 491
K Q + + V + S + +TN + + + C +
Sbjct: 1099 EKIVQDYMCSMTSVQRFIYNHIVDIYQSSRRTSTNRPSFCALETIAELRKCTVHPSLVSH 1158
Query: 492 ISYQELGIAKLSG----------FREWLSI-------HPVIAESDGAADIDVNPRSN--K 532
S ++L I KL G RE L H ++E D +++ N +
Sbjct: 1159 KSLEDLNIEKLKGCVEESGKIIALRELLKECGIGSREHYALSEESAVQDNEISATGNGHR 1218
Query: 533 MIIFAHHLKVLDGVQEFISEKGIG----FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+IF L + + S +G + +DG +R + F + + + I+
Sbjct: 1219 ALIFCQRLSAVQLLVNLFSSGELGSDIRYAVLDGTVPVNERHTVAEKFNIDPSIHVLILT 1278
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
GG GL+ A V+FLE +P LQA DRAHR GQ AVN+Y + + ++
Sbjct: 1279 TNIGGEGLNLIGADIVIFLEHDWNPVKDLQAMDRAHRIGQRCAVNVYRLITEGSIEQKIM 1338
Query: 649 QNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGS 690
+ ++ +LQ +A E + L + D G+
Sbjct: 1339 RLQKFKTNTANALVGADNRSLQTMATEQLMELFVIDDVSPGT 1380
>gi|168212253|ref|ZP_02637878.1| putative helicase [Clostridium perfringens CPE str. F4969]
gi|170716039|gb|EDT28221.1| putative helicase [Clostridium perfringens CPE str. F4969]
Length = 1067
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 236/502 (47%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 568 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 625
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P I LV G ++ + R
Sbjct: 626 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRIGLVHGSKSKRDKVLR 681
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L +K+ + I+DE+ +++
Sbjct: 682 DFKRGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDKKAYENLSFDYCIIDEAQNIKNPV 741
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 742 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 784
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 785 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 835
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 836 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 892
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 893 GGSSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGG 945
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 946 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1005
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1006 HRFGQENKVEVIKLVAKDTIEE 1027
>gi|262195025|ref|YP_003266234.1| SNF2-like protein [Haliangium ochraceum DSM 14365]
gi|262078372|gb|ACY14341.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
Length = 985
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 140/490 (28%), Positives = 222/490 (45%), Gaps = 74/490 (15%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
LP L + +Q GVR+ LR G ++AD+MGLGKTLQ + C + G LVV
Sbjct: 534 LPDDLRAELRGYQHTGVRWLSFLRDAGLGAVLADDMGLGKTLQTL----CALR-GRSLVV 588
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
CP + +WA+EL R+ P + L G R L VV+ SY +L + +
Sbjct: 589 CPTSVVHNWADELRRFRPAL---RVALYHGPRRE---LDPEADVVLTSYALLRLDIEQLS 642
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFH 366
W +++DE+ ++ E + +A + A + V LSGTP L + +FH
Sbjct: 643 AIAWDAVVLDEAQAIK----NPESQVARAAFRLDAGFR--VALSGTPVENRLDELWSLFH 696
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+N GLLG K F + Y D +G G E+L ++ ++RR
Sbjct: 697 FVNR---GLLGGRK-SFKERYAD-PVARGEDGAA----------EQLRARIR-PFLLRRR 740
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K+ + +LPP+ ++ L SE +AA DA T +D E
Sbjct: 741 KREVAPELPPRTEAVLHCELSDSE----RAAY--------DAVRAATQRDVLE------- 781
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIA---ESDGAADID--------VNPRSNKMII 535
RL + L R+ + HP + E+D +A ++ V K ++
Sbjct: 782 -RLAHGGGVMEALEALLRLRQ-AACHPALLPGREADTSAKMEMLVDALSVVAAEGGKALV 839
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ +LD ++ + I F R+DG+T RDR V +FQ + + +I + AGG G
Sbjct: 840 FSQWTGLLDLIEPHLRAAEISFNRLDGST--RDRGGVVAAFQDESGPTVMLISLKAGGTG 897
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L+ ++A +V + +P++ QA DRAHR GQ V +Y +KDT +E L +
Sbjct: 898 LNLTAADHVFLCDPWWNPAVEEQAADRAHRIGQDRPVMVYRLVSKDTVEE-RILALQEQK 956
Query: 656 RCVSSATNGK 665
R ++ A G+
Sbjct: 957 RALAEAAIGE 966
>gi|414877443|tpg|DAA54574.1| TPA: putative chromatin-remodeling factor family [Zea mays]
Length = 913
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 137/570 (24%), Positives = 247/570 (43%), Gaps = 97/570 (17%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ AG +VV P
Sbjct: 40 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIAGPHMVVAPKSTLG 99
Query: 257 SWAEELERWLPFCLPADI--------HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W +E++R+ P H+ R+N + +F V V S+ M + + ++
Sbjct: 100 NWMKEIQRFCPILRAVKFLGNPEERNHI----RDNLLQPGKFD-VCVTSFEMAIKEKSAL 154
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +
Sbjct: 155 RRFSWRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWALL 208
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
N L P + A+ T+ + + G Q ++ Q K +R ++RRL
Sbjct: 209 NFLLPEIFSSAE-----TFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRL 253
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K + LPPK+ I+++ + + + +A + KD + + G
Sbjct: 254 KSDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVINAGGER 298
Query: 487 CRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
RL I+ Q E G +G E L + + R ++
Sbjct: 299 KRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLIENAGKMVLLDKLLPKLKERDSR 356
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITA 591
++IF+ ++LD +++++ +G + RIDGNT DR +++ +F +E + ++ A
Sbjct: 357 VLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNSPGSEKFVFLLSTRA 416
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG+G++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E +
Sbjct: 417 GGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 476
Query: 652 NKSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSED 692
K L R T K D LQ + D T DR E+
Sbjct: 477 YKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEE 536
Query: 693 LTLDQVASSDQFQE---LMKVPESSEASDF 719
T + A +F E K+ +++E DF
Sbjct: 537 TTAELDAKMKKFTEDAIKFKMDDNAELYDF 566
>gi|168206269|ref|ZP_02632274.1| putative helicase [Clostridium perfringens E str. JGS1987]
gi|170662244|gb|EDT14927.1| putative helicase [Clostridium perfringens E str. JGS1987]
Length = 1067
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 236/502 (47%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 568 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEIIDLGFGG--VLADDMGLGK 625
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 626 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 681
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 682 DFKRGFGIKVEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPA 741
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 742 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 784
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 785 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 835
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 836 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 892
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 893 GESSKLTVVKEIVK-------DASESGKKILLFSQFTSVLKKIEEDFKKEDISYLYLDGG 945
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V +F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 946 TYAKDRVEIVKNFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1005
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1006 HRFGQENKVEVIKLVAKDTIEE 1027
>gi|408370538|ref|ZP_11168314.1| SNF2-related protein [Galbibacter sp. ck-I2-15]
gi|407744021|gb|EKF55592.1| SNF2-related protein [Galbibacter sp. ck-I2-15]
Length = 815
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 202/446 (45%), Gaps = 59/446 (13%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPADIH 275
L+AD+MGLGKTLQ I + ++ + L++CPA L +W E E++ P ++
Sbjct: 373 TLLADDMGLGKTLQTITSMSYWLESNPKSKFLIICPASLIYNWKNEFEKFAP---NFNLC 429
Query: 276 LVFGHRNNPVHLTRFP-RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPE 334
+ G + + H +V++ SY ++ + M + W +++DESHH+ + +
Sbjct: 430 IYHGTQRDINHFLEGEYQVLITSYPLIRNDNELMSKMLWDAIVLDESHHI----KNYTAK 485
Query: 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL---LGKAKYDFAKTYCDVK 391
+ +AVL + +R V+L+GTP ++ D+F Q++ L P L L + K F K
Sbjct: 486 QTQAVLKLRG--RRRVILNGTPIMNNVTDLFPQLHFLLPQLFPSLKQFKEQFEKPLA--- 540
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
F KG E++N L K T ++RR KQ LPPK ++ +
Sbjct: 541 ------------FKKGE--EQVNTLKKLTSPFILRRTKQTAGPDLPPKTESVLWCEMGEH 586
Query: 450 EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG----- 504
+ ++ + + + NDK + +LG + GI KL
Sbjct: 587 QRLAYEEVKNKVKSNIMVEINDKGLNKA----------KLGVLQ----GITKLRQVCSSP 632
Query: 505 --FREWLSIH--PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
+E + P I + + NK+I+F+ L +D + E E I + +
Sbjct: 633 RLLKEETDFNNRPSIKIDSLIETLTTDLAENKVIVFSQFLGTMDLLCEAFEENDITYRQF 692
Query: 561 DGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
G T ++R V FQ + ++++ ++ + AG G++ ++A V +E + ++ QA
Sbjct: 693 RGKTAAKERIRLVSEFQEEDSDIQVFLLSLMAGNSGINLTNANYVFLMEPWWNKAVQQQA 752
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDE 645
DR HR GQ V Y KDT +E
Sbjct: 753 IDRTHRIGQDQKVFAYNMICKDTIEE 778
>gi|311745326|ref|ZP_07719111.1| Snf2 family protein [Algoriphagus sp. PR1]
gi|126577862|gb|EAZ82082.1| Snf2 family protein [Algoriphagus sp. PR1]
Length = 974
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 231/473 (48%), Gaps = 61/473 (12%)
Query: 192 KLPKSLLDVILPFQLEG---VRF--GLRRGGRCLIADEMGLGKTLQAIAIAA--CFISAG 244
++P + P+Q G +RF + GG CL AD+MGLGKT+Q +A+ A ++ G
Sbjct: 507 EIPGKFAGTLRPYQHAGFNWLRFLNEFKFGG-CL-ADDMGLGKTVQTLALLAHEAEVNQG 564
Query: 245 SI-LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
L+V P L +W E ++ P L ++ +P + + +V+ SY ++
Sbjct: 565 QTSLLVMPTSLIYNWELEARKFTP-DLKILVYTGTQRVKDPYRFSDYD-LVLTSYGIIRL 622
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ E + +I+DES ++ P A K K+ ++L+GTP + D
Sbjct: 623 DINILKEFFFNYVILDESQAIK------NPGSNIAAAVNQLKSKQRLILTGTPVENGTMD 676
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ Q+N + PGLLG ++ F K + Q D +K +L + + ++
Sbjct: 677 LWSQMNFINPGLLG-TQHSFKKQFLLPIEKQN-------DKNKAQKLHSM----IKPFIL 724
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RRLK + LP K + K S + + + V + K+ +K D
Sbjct: 725 RRLKSQVATDLPEKITNV-----KYSAMTTEQENV---YEEVKNYYREKIISD------- 769
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVI------AESDGAADIDVNPRS-----NK 532
G+ + Q + L+ R+ ++ HP + ES DI +S +K
Sbjct: 770 --IKATGRNTQQFTLLRGLTQLRQ-IANHPKMVRDDYEGESGKLEDITYMLQSTISENHK 826
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592
+++F+ ++ L V+E++ ++GI + +DG+T +DRQ+ V +FQ ++++K+ +I + AG
Sbjct: 827 VLVFSQFVRHLSIVKEYLDKEGIPYSYLDGST--KDRQAQVEAFQENDDIKVFLISLKAG 884
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F ++++ +E
Sbjct: 885 GVGLNLTKAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVIIYKFISRNSVEE 937
>gi|340353125|ref|ZP_08675953.1| hypothetical protein HMPREF9144_1763 [Prevotella pallens ATCC 700821]
gi|339611321|gb|EGQ16151.1| hypothetical protein HMPREF9144_1763 [Prevotella pallens ATCC 700821]
Length = 1344
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 220/465 (47%), Gaps = 54/465 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + + G CL AD+MGLGKTLQ I + G+ LV
Sbjct: 884 IPKTLQAQLRDYQEEGFEWMSKVTAWGAGVCL-ADDMGLGKTLQTITLLLEQSKEGASLV 942
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ PA + +W EL+R+ P L + R+ + + VV+ +Y +L+ ++ +
Sbjct: 943 IAPASVVPNWRNELKRFSP-TLNVIVLNQSDDRSKAIKDAQSGDVVIATYALLNTQQEEL 1001
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
+++W ++ +DE+H ++ + + KA + + A R V+L+GTP L+ +++F
Sbjct: 1002 TKREWNVVCLDEAHTIK----NANTKMSKAAMLLQAH--RKVILTGTPIQNHLAELWNLF 1055
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F + K +Q G D + +L L ++RR
Sbjct: 1056 QFIN---PGLLGSAE-QFKR-----KFIQPIAGN--NDKERQSQLRRL----ISPFLLRR 1100
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSA-----KAAVGVINDSEKDATNDKTPKDSDEH 480
K ++ +LP K I + L E+ + V+ D + N T +
Sbjct: 1101 TKSEVIEELPTKNDIYIPVELSSDEMTMYEVRRRQVEAAVLADK---SLNVSTLSEITRL 1157
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
C L +++ G +KL F + +AE +N N+ ++F+
Sbjct: 1158 RQMACSCSLVDSNWKIPG-SKLLTFLD-------LAEG-------LNDSGNRALVFSQFT 1202
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
LD V++ + + + F+ +DGNT R+ V FQ + + +I + AGG+GL+ +
Sbjct: 1203 SYLDEVRKAMEKAKLPFLYLDGNTPMTKREQLVKDFQ-TGKCPFFLISLKAGGLGLNLTG 1261
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1262 ANYVIHLDPWWNPAIEQQATDRAYRIGQQQDVTVYHLISQHTIEE 1306
>gi|150865881|ref|XP_001385272.2| helicase [Scheffersomyces stipitis CBS 6054]
gi|149387137|gb|ABN67243.2| helicase [Scheffersomyces stipitis CBS 6054]
Length = 809
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 135/506 (26%), Positives = 231/506 (45%), Gaps = 57/506 (11%)
Query: 187 DEMIGKLPKSLLDVIL-PFQLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAI- 236
+E++ L L V L P Q+EGV+F G R G CL+ADEMGLGKTL I +
Sbjct: 159 NELVDVLIDPHLSVKLRPHQVEGVKFVYECLMGFRGNNGKGCLLADEMGLGKTLMTITVI 218
Query: 237 -AAC----FI-----SAGSILVVCPAILRLSWAEELERWLPF----CLPADIHLVFGHRN 282
C FI + +L+ CP L +W +E ++WL L ++ R
Sbjct: 219 WTLCRQNPFIKQPRSTIHKVLICCPVSLINNWKDEFKKWLGMNKLSILTLGGNVSSNDRQ 278
Query: 283 NPVHLTRFP--RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
+ V +V++++Y + + + + + LL+ DE H ++ S +V L
Sbjct: 279 DLVSFGNLNVYQVLIMNYEKVTTYHQELSKIRFDLLVCDEGHRLK-----SSSNKVMNHL 333
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ + R +LL+GTP + + + IN + PG+LG K F K++ + T +
Sbjct: 334 -TSFNIPRKILLTGTPIQNDLVEYYTIINFINPGILGDFK-SFQKSFINPIT-RSRDVTC 390
Query: 401 FQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQLPPKRRQIIRL----LLKR--SEIV 452
F K LE N L+ T +RR + LL L K I+ L KR S I+
Sbjct: 391 FDPVVKEQGLEISNKLIDITKQFTLRRTQSLLLNYLTEKTDVILYAPPTDLQKRLFSYII 450
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL-SGFREWLSI 511
+ K+ ++NDS T T + + C + ++ +KL G +E + +
Sbjct: 451 NLKSFNELMNDSASTTTQAFTLINLFK-----KLCNSPSLLLEDNFFSKLIKGEKEEIEL 505
Query: 512 --HPVIAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
+ S G +I ++ + K+++ +++ K LD ++ + + + F+R+DG+
Sbjct: 506 LNKNTLTTSSGKINILIPLLLEITSFNEKIVLVSNYTKTLDLLEAVLKKLDLSFLRLDGS 565
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T R V+ F SN + + ++ +GG+GL+ A ++ + +PS+ LQ+ R
Sbjct: 566 TAKNLRNKLVNQFNKSN-INVFLLSSKSGGMGLNLVGASRLILFDNDWNPSVDLQSMSRI 624
Query: 624 HRRGQTSAVNIYIFCAKDTTDESHWQ 649
HR GQT IY T DE +Q
Sbjct: 625 HRDGQTRPCFIYRILTTGTIDEKIFQ 650
>gi|442633513|ref|NP_001262078.1| Mi-2, isoform D [Drosophila melanogaster]
gi|440216038|gb|AGB94771.1| Mi-2, isoform D [Drosophila melanogaster]
Length = 1973
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 219/483 (45%), Gaps = 70/483 (14%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 723 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 782
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 783 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 842
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 843 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYK----LLLTGT 896
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 897 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 941
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L + K I +A N K+
Sbjct: 942 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELSAMQ----KKFYKFILTKNYEALNSKSGG 996
Query: 476 DS----DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------- 524
S + D CC + A ++ + + + A +
Sbjct: 997 GSCSLINIMMDLKKCCNHPYL----FPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKML 1052
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++++IF+ K+LD +++F+ + + RIDG RQ A+ F +
Sbjct: 1053 KQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQ 1112
Query: 584 -IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1113 FVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNS 1172
Query: 643 TDE 645
+E
Sbjct: 1173 VEE 1175
>gi|345481883|ref|XP_001605650.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Nasonia vitripennis]
Length = 2009
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 220/491 (44%), Gaps = 88/491 (17%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P +
Sbjct: 724 YQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTII 783
Query: 257 SWAEELERWLP--FCLP----ADIHLVF-------------GHRNNPVHLTRFP-RVVVI 296
+W E E W P +C+ D +V G R + + ++ V++
Sbjct: 784 NWEREFETWAPDFYCVTYVGDKDSRMVIRENELSFEEGAVRGGRASKIRSSQIKFNVLLT 843
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GTP
Sbjct: 844 SYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGTP 897
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++FH +N L + K++ + +Q + F D SK ++++L+ +
Sbjct: 898 LQNNLEELFHLLN-----FLCRDKFN---------DLSAFQNE-FADISKEDQVKKLHEM 942
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 943 LGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PKG 994
Query: 477 SDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPVI 515
+ D CC + +Y+ + K +G LS
Sbjct: 995 GGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGNYETSALIKAAGKLVLLSRMLKK 1054
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+
Sbjct: 1055 LRDDG----------HRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGNITGTQRQEAIDR 1104
Query: 576 FQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
F + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V I
Sbjct: 1105 FNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMI 1164
Query: 635 YIFCAKDTTDE 645
Y F +++ +E
Sbjct: 1165 YRFVTRNSVEE 1175
>gi|303388827|ref|XP_003072647.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
gi|303301788|gb|ADM11287.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
Length = 1257
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 208/461 (45%), Gaps = 63/461 (13%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAI--AACFISAGSILVVCPAILRLSW 258
+Q+EGVR F ++AD+MGLGKTLQ + + + + ILV+CP+ L W
Sbjct: 801 YQIEGVRWLNFLHSFSLNGILADDMGLGKTLQVLTFLCSEIYKTKKKILVICPSSLTGHW 860
Query: 259 AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIV 318
E++++ PF + A+I+ R N +++ SY S IE+DW ++V
Sbjct: 861 KAEVKKFFPF-VTAEIY----RRENRGEYG----ILISSYETFRNDYLSFIEKDWFYVVV 911
Query: 319 DESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
DE H +R +K T + + K R ++L+GTP + D+ N L P +G
Sbjct: 912 DEGHVLR-NKHTILYSRMNMI-----KCSRKIVLTGTPVHNSVEDLVSLFNFLMPNYIGS 965
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLLVQLPP 436
K ++ + + + Q E+LN+L K+ + ++RRLK +L LPP
Sbjct: 966 EK-EYGSLNVKMSDTEIEKTQ-----------EKLNLLHKKVLPFILRRLKIDVLKDLPP 1013
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
K IIR ++ +G + N++ K+ E D GKI +
Sbjct: 1014 K---IIRDII---------VDLGPAQEKLYREINERGGKEKLEDVD----LEYGKIDQKN 1057
Query: 497 LG----------IAKLSGFREWLSIH-PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
+G ++ +S F++ + V A D + +K++IF +D
Sbjct: 1058 VGFKRTRDLLLAVSHMSHFKDSSEVSCKVKALEDIISLCGGEDLRSKILIFFQFKSSIDF 1117
Query: 546 VQEFISEK-GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
V + I EK + R+DG+ R F + +I + GG+GL+ + A V
Sbjct: 1118 VIKDIMEKYKFKYSRLDGSVPSSTRAKIAEEFN-TGTTQILFLTTQVGGLGLNLTGADTV 1176
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V E +P LQA DRAHR GQ VN++ AK+T +E
Sbjct: 1177 VMYEHDWNPFNDLQAMDRAHRIGQKRTVNVFRLIAKNTLEE 1217
>gi|4325130|gb|AAD17276.1| dMi-2 protein [Drosophila melanogaster]
Length = 1982
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 218/483 (45%), Gaps = 70/483 (14%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 732 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 791
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 792 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 851
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 852 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYK----LLLTGT 905
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 906 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 950
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L K I +A N K+
Sbjct: 951 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELS----AMQKKFYKFILTKNYEALNSKSGG 1005
Query: 476 DS----DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------- 524
S + D CC + A ++ + + + A +
Sbjct: 1006 GSCSLINIMMDLKKCCNHPYL----FPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKML 1061
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++++IF+ K+LD +++F+ + + RIDG RQ A+ F +
Sbjct: 1062 KQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQ 1121
Query: 584 -IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1122 FVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNS 1181
Query: 643 TDE 645
+E
Sbjct: 1182 VEE 1184
>gi|73540253|ref|YP_294773.1| SNF2-like protein [Ralstonia eutropha JMP134]
gi|72117666|gb|AAZ59929.1| SNF2-related:Helicase, C-terminal [Ralstonia eutropha JMP134]
Length = 988
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 130/512 (25%), Positives = 238/512 (46%), Gaps = 68/512 (13%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
LP +L + P+Q +G R+ + G CL AD+MGLGKTLQA+A+ G+ LV
Sbjct: 495 LPPNLAAELRPYQYDGYRWAMTLASAGLGACL-ADDMGLGKTLQALAVLLARAGGGAGLV 553
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
+ P + +WA E R+ P ++H+ G R + +V++SYT+L + R++
Sbjct: 554 IAPTSVCGNWAAEARRFAPTL---NVHVYAEGEREALLTQVGAGDLVIVSYTLLQQARQA 610
Query: 308 MIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
++W ++ DE+ ++ S+R +A+ D+ + + ++LSGTP +R +++
Sbjct: 611 FCAREWHTVVADEAQAIKNAASRRA------QALFDLPSGFR--MVLSGTPIENRLAELW 662
Query: 366 HQINMLWPGLLGK-AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ PGLLG A+++ + + + + ++ VR + L ++ V+ R
Sbjct: 663 SVMRFCNPGLLGSLARFN-----------EHFANPIERSGAREVR-QRLRRMIAPFVL-R 709
Query: 425 RLKQHLLVQLPPKRRQIIRL-----------LLKRSEIVSAKAAVGVINDSEKDATNDKT 473
R K +L +LPP+ +IR+ L+R A+AA+ + + K AT
Sbjct: 710 RTKAQVLDELPPRTELVIRVEPAPVEAAHYEALRRQAQSQAEAALARVEAARK-ATRGAP 768
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS----IHPVIAES--------DGA 521
+I +A+L R + P + ++ D A
Sbjct: 769 EGARARAVAQAQFQAEARIHV----LAQLMRLRRAACDARLVTPEVGQAGAKVRTFVDLA 824
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
++ N +K+++F+ + L +++ I + G+ +DG T +R V +FQ + E
Sbjct: 825 GELAAN--GHKVLVFSQFVDFLQLLRQGIEQAGLALQYLDGATPAAERTRRVAAFQ-AGE 881
Query: 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
+ +I + AGG GL+ ++A V+ + +P+ QA RAHR GQ V +Y
Sbjct: 882 GDVFLISLKAGGFGLNLTAADYVIIADPWWNPAAEDQAMGRAHRIGQQRPVTVYRLITAG 941
Query: 642 TTDESHWQNLNKSLRCVSSATNGKYDALQEIA 673
T +E L+K R ++ +G DA E A
Sbjct: 942 TIEE-RIVELHKDKRALA---DGLLDADDEAA 969
>gi|24667055|ref|NP_649154.2| Mi-2, isoform A [Drosophila melanogaster]
gi|281366478|ref|NP_001163476.1| Mi-2, isoform C [Drosophila melanogaster]
gi|13124018|sp|O97159.2|CHDM_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein Mi-2 homolog;
AltName: Full=ATP-dependent helicase Mi-2; Short=dMi-2
gi|23093096|gb|AAF49099.2| Mi-2, isoform A [Drosophila melanogaster]
gi|272455249|gb|ACZ94747.1| Mi-2, isoform C [Drosophila melanogaster]
Length = 1982
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 218/483 (45%), Gaps = 70/483 (14%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 732 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 791
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 792 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 851
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 852 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYK----LLLTGT 905
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 906 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 950
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L K I +A N K+
Sbjct: 951 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELS----AMQKKFYKFILTKNYEALNSKSGG 1005
Query: 476 DS----DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------- 524
S + D CC + A ++ + + + A +
Sbjct: 1006 GSCSLINIMMDLKKCCNHPYL----FPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKML 1061
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++++IF+ K+LD +++F+ + + RIDG RQ A+ F +
Sbjct: 1062 KQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQ 1121
Query: 584 -IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1122 FVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNS 1181
Query: 643 TDE 645
+E
Sbjct: 1182 VEE 1184
>gi|62472261|ref|NP_001014591.1| Mi-2, isoform B [Drosophila melanogaster]
gi|61678453|gb|AAX52739.1| Mi-2, isoform B [Drosophila melanogaster]
Length = 1983
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 218/483 (45%), Gaps = 70/483 (14%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q + G LV P
Sbjct: 733 PYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTL 792
Query: 256 LSWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVV 295
++W E E W P +C L + + G + + + T++ V++
Sbjct: 793 VNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLL 852
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY ++ + DWA+L+VDE+H ++ ++ S+ + +A K +LL+GT
Sbjct: 853 TSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRILNSYTIAYK----LLLTGT 906
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + ++FH +N L + K++ +Q +QG+ F D SK +++ L+
Sbjct: 907 PLQNNLEELFHLLN-----FLSRDKFN---------DLQAFQGE-FADVSKEEQVKRLHE 951
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+L M+RRLK +L +P K I+R+ L K I +A N K+
Sbjct: 952 MLGPH-MLRRLKTDVLKNMPSKSEFIVRVELS----AMQKKFYKFILTKNYEALNSKSGG 1006
Query: 476 DS----DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------- 524
S + D CC + A ++ + + + A +
Sbjct: 1007 GSCSLINIMMDLKKCCNHPYL----FPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKML 1062
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ ++++++IF+ K+LD +++F+ + + RIDG RQ A+ F +
Sbjct: 1063 KQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQ 1122
Query: 584 -IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V IY F +++
Sbjct: 1123 FVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNS 1182
Query: 643 TDE 645
+E
Sbjct: 1183 VEE 1185
>gi|422295740|gb|EKU23039.1| zinc finger ran-binding domain-containing protein 3, partial
[Nannochloropsis gaditana CCMP526]
Length = 616
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 16/229 (6%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++PFQ +G+ FG++ GR L+ADEMGLGKTLQAI I F + LVV P+ ++ SWA
Sbjct: 29 LMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWAN 88
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR---LRKSMIEQDWALLI 317
ELERW P I +V + V R VV+++Y ML + +++ +++
Sbjct: 89 ELERWTKLN-PKRIKMVRSRAD--VEALRDADVVLVTYGMLSATAPVVEALQRARPHVVV 145
Query: 318 VDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
+DESH ++ + + + + KR++LLSGTP+L+RP +++ Q++ + P L G
Sbjct: 146 LDESHSIKNQNSLRN----QLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFG 201
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
++A+ +C+ +QG+ D S + EL+V L+ RR
Sbjct: 202 T-YLEYARRFCNA-----HQGRFGWDVSGASNVAELHVKLQIVKASRRF 244
>gi|452002263|gb|EMD94721.1| hypothetical protein COCHEDRAFT_1167819 [Cochliobolus
heterostrophus C5]
Length = 888
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 143/575 (24%), Positives = 246/575 (42%), Gaps = 89/575 (15%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKS--LLDVILP-------- 203
P ++ V+ + + SI R +P P L + + G PK ++DV++
Sbjct: 196 PLLSTTVMPQRNPSIPQPRHDPDAPNAL----IMKRPGSCPKGKQIVDVVVDPVLSKHLR 251
Query: 204 -FQLEGVRF------GLR-RGGRCLIADEMGLGKTLQAIAIAACFISAGSI--------- 246
Q EGV+F G+R G ++ADEMGLGKTLQ I + + I
Sbjct: 252 DHQREGVQFLYECVMGMRCEGEGAIMADEMGLGKTLQTITLLWTLMKQNPIHDSPPVIKK 311
Query: 247 -LVVCPAILRLSWAEELERWLP------FCLPAD----IHLVFGHRNNPVHLTRFPRVVV 295
L+VCPA L +W E +WL F L A + G N +++
Sbjct: 312 ALIVCPAGLVDNWKREFRKWLGNERVGVFVLDAKNKKIANFTMGKSYN---------IMI 362
Query: 296 ISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLS 353
+ Y ML +++ + + ++I DE H ++ + KA+L + + +R ++LS
Sbjct: 363 VGYEMLRIVQEELKKGSGVDIVIADEGHRLKTANN-------KAMLAIQSLNTERRIILS 415
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKG-VRLE 411
GTP + + + I+ + PGLLG+ + F +++ ++ ++ Q + + KG R +
Sbjct: 416 GTPLQNDLGEFYTAIDFVNPGLLGQ-RTAFKRSF-ELPIMRSRQPDASEAELEKGEARWK 473
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLK----RSEIVSAK 455
EL V L MIRR + L LPPK I+ R +L R + S
Sbjct: 474 EL-VSLTSQFMIRRTAEVLSKYLPPKTEHIVFCRPTKGQAETYRAILDSPTFRLALGSTD 532
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
A+ +IN +K + K S ++DD+ + I I S L + +
Sbjct: 533 IALQLINVLKKVCNSPSLLKSSKDNDDTPSEMLQSIIPLIPSKILNSSASSAKLRLLDSL 592
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
S K++I +++ LD ++ + F+R+DG+T RQS +
Sbjct: 593 VHSIYTTT------EEKIVIVSNYTTTLDMIERLLVSLSYTFLRLDGSTPASKRQSLIEK 646
Query: 576 FQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + + ++ +GGVGL+ A +V ++ +P+ LQA R HR GQ
Sbjct: 647 FNKTPKTTSFAFLLSAKSGGVGLNLIGASRIVLFDIDWNPATDLQAMARIHRDGQKLPCK 706
Query: 634 IYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
+Y F + DE +Q + ++ + K A
Sbjct: 707 VYRFLVQGGLDEKIYQRQVMKMGLANAVVDNKASA 741
>gi|330829013|ref|YP_004391965.1| SWI/SNF family helicase [Aeromonas veronii B565]
gi|328804149|gb|AEB49348.1| SWI/SNF family helicase [Aeromonas veronii B565]
Length = 1291
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 211/466 (45%), Gaps = 60/466 (12%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q EGVR+ + G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 835 PDELLTSLRDYQKEGVRWMVTLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 893
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF---GHRNNPVHLTRFPRVVVISYTMLHRLRK 306
P + +W EE+ R+ P D+ +VF R + + +V++I+Y ML L +
Sbjct: 894 VPKSVVTNWQEEVTRFAPEL---DV-VVFENPAEREGIIREAKAGQVILINYGMLGSLAE 949
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 950 ALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGELWS 1003
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV-- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 1004 LFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVISP 1042
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1043 FILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQSA 1090
Query: 481 DDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D L G + L + EW + E+ + ++ +++++F+
Sbjct: 1091 DGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAID-GGHRVLVFSQF 1149
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +L ++ I +K + +DG + RQ ++ F+ EV + +I + AGG GL+ +
Sbjct: 1150 VDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFR-HEEVPLFLISLKAGGTGLNLT 1208
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1209 QADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1254
>gi|410633135|ref|ZP_11343782.1| helicase [Glaciecola arctica BSs20135]
gi|410147304|dbj|GAC20649.1| helicase [Glaciecola arctica BSs20135]
Length = 1425
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 221/481 (45%), Gaps = 70/481 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P + + +QL G + R G CL AD+MGLGKTLQA+AI S G L
Sbjct: 949 QIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRASHGPSL 1007
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPRVVVISYTM 300
V+ P + +W +E ++ P L I F N + L F V+ISY +
Sbjct: 1008 VIAPTSVCFNWQQEALKFAP-TLKVKI---FSESTNTMQREILLNDLGPFD-CVIISYGL 1062
Query: 301 LHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP-- 356
L R + + E W ++ DE+ ++ +KRT KA + + K I +GTP
Sbjct: 1063 LQRESEILKEVHWHSIVADEAQALKNPLAKRT------KAAFALKSDFKMIT--TGTPIE 1114
Query: 357 -SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
+L+ + +F IN PGLLG K + ++ + +D + +
Sbjct: 1115 NNLTELWSLFRFIN---PGLLGNIKRFGERFSLPIENSK-------EDPLAARKASQALK 1164
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
L Q ++RR+K +L +LP + IR+ + SAK E+D
Sbjct: 1165 TLIQPFILRRMKNQVLTELPSRTEINIRVEM------SAK---------ERDFYEALRLN 1209
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESD---------GAADI 524
D SG G+ + L A+L R+ +P V+AE+D
Sbjct: 1210 AVDNISQSGQQANAGEQRIKML--AELVKLRQ-ACCNPKLVMAETDIPSAKLAALDELLE 1266
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
++ ++K +IF+ + L +++ I KG + +DG+T + RQ +V++FQ S E I
Sbjct: 1267 ELKLNNHKALIFSQFVGHLQLIKQHIEAKGFSYQYLDGSTPQKQRQKSVNAFQ-SGEGDI 1325
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +
Sbjct: 1326 FLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLITQNTIE 1385
Query: 645 E 645
E
Sbjct: 1386 E 1386
>gi|422345598|ref|ZP_16426512.1| hypothetical protein HMPREF9476_00585 [Clostridium perfringens
WAL-14572]
gi|373228323|gb|EHP50633.1| hypothetical protein HMPREF9476_00585 [Clostridium perfringens
WAL-14572]
Length = 1067
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 234/502 (46%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 568 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEIIDLGFGG--VLADDMGLGK 625
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P I LV G ++ R
Sbjct: 626 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIKIGLVHGSKSKRDKALR 681
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 682 DFKRGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPA 741
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 742 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 784
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 785 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 835
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 836 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 892
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 893 GGSSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGG 945
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 946 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEEQATDRA 1005
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1006 HRFGQENKVEVIKLVAKDTIEE 1027
>gi|429766793|ref|ZP_19299035.1| protein, SNF2 family [Clostridium celatum DSM 1785]
gi|429182939|gb|EKY24015.1| protein, SNF2 family [Clostridium celatum DSM 1785]
Length = 958
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 128/505 (25%), Positives = 245/505 (48%), Gaps = 66/505 (13%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFI 241
+D++ +LPK+ + +Q +G F LR G ++ADEMGLGKT+Q IA +
Sbjct: 485 IDKLQYELPKNFNGYLRKYQYKGYCF-LRTMEELGFGAILADEMGLGKTIQTIAFLSAKK 543
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
++ S L+V P+ L +W E+E++ P A I+ RN + + +++ +YT++
Sbjct: 544 NSNS-LIVAPSSLIYNWKSEIEKFAPSLKVAIINGSKEQRNFILKDYKNYDILLTTYTLI 602
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+ ++ + +I+DE+ +++ S S+ +++ ++ L+GTP +
Sbjct: 603 KNDIEDYLKISFNYVILDEAQYIKNS--NSQNSRYIKMINSDMRIA----LTGTPIENST 656
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ + + PG L YD D TV+ Y +L + SK V L+EL L+ +
Sbjct: 657 LELWSIFDFIMPGYL----YD-----EDTFTVK-YHRKLNE--SKEV-LDELQRLINPFI 703
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLL----KRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ RR K+ + ++LPPK +II++ L KR + +K + ++ KD
Sbjct: 704 L-RRYKKDVAIELPPKIEKIIKVELPNEQKRVYNIYSKKVLEIVEKKIKD---------- 752
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD-----GAADIDVN----- 527
DE ++ GKI ++ ++ R+ L + P + +D G ++ V
Sbjct: 753 DEFNN-------GKIEI----LSYITKLRQ-LVLDPTVILNDYIGENGKLEVLVELLHKS 800
Query: 528 -PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
+K+++F+ VL ++E + + I + +DG + + ++ F + E + +
Sbjct: 801 INEGHKILVFSQFTTVLKNIKERLKYESISYSYLDGTISSKKSEEIINEFN-NEEKSVFL 859
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGG+GL+ +A V+ + +P++ QA DR+HR GQ + V + A DT +E
Sbjct: 860 ISLKAGGIGLNLQNADIVIHFDPWWNPAIEDQATDRSHRIGQKNVVEVIKLIANDTIEEK 919
Query: 647 HWQNLNKSLRCVSSATNGKYDALQE 671
NK ++S N D L+E
Sbjct: 920 INLIQNKKKSLINSILNN--DNLKE 942
>gi|358054278|dbj|GAA99204.1| hypothetical protein E5Q_05897 [Mixia osmundae IAM 14324]
Length = 911
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 143/541 (26%), Positives = 239/541 (44%), Gaps = 89/541 (16%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAI 236
V+D +GK V+ P Q+EGV+F G+ G C++ADEMGLGKTLQ I +
Sbjct: 317 VLDPRLGK-------VLRPHQVEGVKFLYKAATGMISEGAFGCIMADEMGLGKTLQCITL 369
Query: 237 AACFI------SAGSI---LVVCPAILRLSWAEELERWLPFCLPADIH--LVFGHRNNPV 285
+ G+I +VVCPA L +WA E +WL P I+ + G P
Sbjct: 370 LFTLLKQSPKAGKGTIEKAIVVCPASLVRNWANEFVKWLG---PGTINPLAIDGSMPKPD 426
Query: 286 HLTRFPR------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
+ + V+++SY L L + L++ DE+H ++ + +
Sbjct: 427 LMAALRQWVSAHGRAICQPVIIVSYETLRSLTAELGNAPIGLILCDEAHRLKNATNLTYT 486
Query: 334 EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
E LD V+R VLL+GTP + + F +N PG LG A+ DF K Y ++ V
Sbjct: 487 E-----LD-KINVQRRVLLTGTPVQNDLTEYFSLLNFAIPGKLG-ARADFKKNY-ELAIV 538
Query: 394 QGYQGQLFQDFSKGV--RLEELNVLLKQTVMIRRLKQHLLVQLP------------PKRR 439
+G + + +L+EL L+ Q V IRR L LP P +
Sbjct: 539 RGRMSEATDKERERCQEKLKELTSLVNQFV-IRRTNDLLTKYLPVKYEHVVFCNLSPLQL 597
Query: 440 QIIRLLLKRSEIVSAK---AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
Q+ + L+KR E AK +A+G I ++K + P+ D + + ++ +
Sbjct: 598 QLYQKLIKRPEEKDAKGGTSALGAIQRAQKLCNH---PQLLDAY---------FRDNFDD 645
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRSN-KMIIFAHHLKVLDGVQEF 549
GF + V++E G + + +N K+++ +++ + LD ++
Sbjct: 646 FKNDMPDGFDPFDRRRSVVSEYSGKTLVLDRFLEKMRAETNDKIVLISNYTETLDVFEKM 705
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFL 607
+ ++ G+ R++G+T + RQ V F + E K + ++ AGG G++ A ++
Sbjct: 706 LRDRKYGYFRLEGSTSIKKRQKLVDEFN-NPEGKEFVFLLSSKAGGCGINLIGANRLILF 764
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
+ +P+ QA R R GQ +Y F A T +E +Q S + K D
Sbjct: 765 DPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQAHKQALSSCVVDAKED 824
Query: 668 A 668
A
Sbjct: 825 A 825
>gi|194036340|ref|XP_001928553.1| PREDICTED: chromodomain helicase DNA binding protein 1-like [Sus
scrofa]
Length = 901
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 219/485 (45%), Gaps = 59/485 (12%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAI----AACFISAGSILVVCPAI 253
P+QLEGV F + G C++ DEMGLGKT Q IA+ A G L++CP
Sbjct: 50 PYQLEGVNWLAQCFHYQNG--CILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPLS 107
Query: 254 LRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPR------VVVISYTMLHRLRK 306
+ +W EE+ER C P + + G + HL + + V++ +Y + +
Sbjct: 108 VLSNWKEEMER----CAPGLCCVTYAGDKEERAHLQQDLKQESGFHVLLTTYEICLKDAS 163
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ W++L+VDE+H R + S + + VA + +LL+GTP + +++
Sbjct: 164 FLKSFPWSVLVVDEAH--RLKNQNSLLHKSLSEFSVAFR----LLLTGTPIQNSLQELYS 217
Query: 367 QINMLWPGLLGKAKY-DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
++ + P L K + DF + Y D++ +L++ L Q ++RR
Sbjct: 218 LLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYK--------------LLQPFLLRR 263
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+K + +LP K +I + + KA I + DA ++ K +
Sbjct: 264 VKAEVAAELPKKTEVVIYHGMSALQKKYYKA----ILMKDLDAFENEMAKKVKLQNVLSQ 319
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRSNKMIIFAHH 539
+ Y G+ E I + E+ G + + + +++++F+
Sbjct: 320 LRKCVDHPYLFDGVEP-----EPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQM 374
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
++LD +Q+++ +G + R+DG+ +R A+ +F + I ++ AGGVG++ +
Sbjct: 375 TQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFG-QQPIFIFLLSTRAGGVGMNLT 433
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659
+A V+F++ +P LQA RAHR GQ +V + +DT +E + L+ +
Sbjct: 434 AADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTN 493
Query: 660 SATNG 664
+ G
Sbjct: 494 TIIEG 498
>gi|309800861|ref|ZP_07694993.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
gi|308222397|gb|EFO78677.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
Length = 1277
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 234/530 (44%), Gaps = 74/530 (13%)
Query: 172 RWNPCRPEHLSD-EVVDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGL 227
R N +++D +V+D ++P++L +V+ P+Q EG R+ +G ++ADEMGL
Sbjct: 766 RKNASFTSYVNDVKVIDPSRYEVPQALRNVLRPYQEEGFRWLSTLWDKGFGGILADEMGL 825
Query: 228 GKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
GK++Q +A+ G L+VCPA L +WA E E+ F + +V G + ++
Sbjct: 826 GKSVQLLALVEARKGNGPTLIVCPASLVYNWAAECEK---FTADLTVEVVAGTKTERRNV 882
Query: 288 TR------------------------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
R P +++ SY +L R +A +++DE+ +
Sbjct: 883 LRRLRAMVESESSSSSVSEASSESEDGPDILITSYDLLRRDIAEYAGCRFACMVLDEAQY 942
Query: 324 VRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
++ + T + VK V V L+GTP +R +++ + L PGLLG F
Sbjct: 943 IK-NHATKVAKVVKQV-----NVAHRFALTGTPIENRLSELWSIFDFLMPGLLGTYTR-F 995
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQI-- 441
+ Y G + + D +L L L + RRLK+ +L LP K +
Sbjct: 996 RERYEQPILAPGPEQSVMAD-----KLRALVGLFIK----RRLKKDVLTDLPDKFENVVT 1046
Query: 442 IRLLLKRSEIVSA-----KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
++L ++ ++ +A +AA+ D++ + + + + + CC ++ Y +
Sbjct: 1047 VKLAGEQRKLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRE--LCCD-PRLVYAD 1103
Query: 497 L--GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
G AKL + + ++ K++IF+ LD + ++E G
Sbjct: 1104 AKNGSAKLEAIDDLV--------------VNCMDEGKKVLIFSQFTSFLDLIGVRLAEHG 1149
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
+ F I G T R R V F ++V + +I + AG GL+ A V+ + + +
Sbjct: 1150 VAFHAITGETPKRKRVELVDEFN-GDDVPVFLISLKAGNTGLNLVGASVVIHADPWWNEA 1208
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
QA DRAHR GQT VN+Y AKDT +E + R T+G
Sbjct: 1209 AQNQATDRAHRIGQTQDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1258
>gi|306822587|ref|ZP_07455965.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|304554132|gb|EFM42041.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
Length = 1286
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 134/530 (25%), Positives = 234/530 (44%), Gaps = 74/530 (13%)
Query: 172 RWNPCRPEHLSD-EVVDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGL 227
R N +++D +V+D ++P++L +V+ P+Q EG R+ +G ++ADEMGL
Sbjct: 775 RKNASFTSYVNDVKVIDPSRYEVPQALRNVLRPYQEEGFRWLSTLWDKGFGGILADEMGL 834
Query: 228 GKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
GK++Q +A+ G L+VCPA L +WA E E+ F + +V G + ++
Sbjct: 835 GKSVQLLALVEARKGNGPTLIVCPASLVYNWAAECEK---FTADLTVEVVAGTKTERRNV 891
Query: 288 TR------------------------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323
R P +++ SY +L R +A +++DE+ +
Sbjct: 892 LRRLRAMVESESSSSSVSEASSESEDGPDILITSYDLLRRDIAEYAGCRFACMVLDEAQY 951
Query: 324 VRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDF 383
++ + T + VK V V L+GTP +R +++ + L PGLLG F
Sbjct: 952 IK-NHATKVAKVVKQV-----NVAHRFALTGTPIENRLSELWSIFDFLMPGLLGTYTR-F 1004
Query: 384 AKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQI-- 441
+ Y G + + D +L L L + RRLK+ +L LP K +
Sbjct: 1005 RERYEQPILAPGPEQSVMAD-----KLRALVGLFIK----RRLKKDVLTDLPDKFENVVT 1055
Query: 442 IRLLLKRSEIVSA-----KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
++L ++ ++ +A +AA+ D++ + + + + + CC ++ Y +
Sbjct: 1056 VKLAGEQRKLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRE--LCCD-PRLVYAD 1112
Query: 497 L--GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
G AKL + + ++ K++IF+ LD + ++E G
Sbjct: 1113 AKNGSAKLEAIDDLV--------------VNCMDEGKKVLIFSQFTSFLDLIGVRLAEHG 1158
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614
+ F I G T R R V F ++V + +I + AG GL+ A V+ + + +
Sbjct: 1159 VAFHAITGETPKRKRVELVDEFN-GDDVPVFLISLKAGNTGLNLVGASVVIHADPWWNEA 1217
Query: 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
QA DRAHR GQT VN+Y AKDT +E + R T+G
Sbjct: 1218 AQNQATDRAHRIGQTQDVNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1267
>gi|410614380|ref|ZP_11325424.1| helicase [Glaciecola psychrophila 170]
gi|410165963|dbj|GAC39313.1| helicase [Glaciecola psychrophila 170]
Length = 1437
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 131/486 (26%), Positives = 222/486 (45%), Gaps = 80/486 (16%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P + + +QL G + R G CL AD+MGLGKTLQA+AI G L
Sbjct: 961 QIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRAKQGPSL 1019
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------VVVISYTML 301
V+ P + +W +E ++ P +I +F N V + V+ISY +L
Sbjct: 1020 VIAPTSVCFNWQQEALKFAP---TLNIK-IFADTANTVQRQKLLNELSPFDCVIISYGLL 1075
Query: 302 HRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP--- 356
R + + W ++ DE+ ++ +KRT KA + + + K I +GTP
Sbjct: 1076 QREHEILKGVHWHSIVADEAQALKNPLTKRT------KAAVALKSDFKMIT--TGTPIEN 1127
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+L+ + +F IN PGLLG K F + + + + S+ ++
Sbjct: 1128 NLTELWSLFRFIN---PGLLGNIK-RFGERFSVPIENANEEPLAARKASQALKA------ 1177
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVI--NDSEKDATN 470
L Q ++RR+K +L +LP + IR+ + E +A A+ I N+ + +A
Sbjct: 1178 LIQPFILRRMKNQVLTELPSRTEINIRVEMSPQERDFYEALRLNAIDNISQNEQQANAGE 1237
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESD--------- 519
+ ++ ACC HP V+AE+D
Sbjct: 1238 QRIKMLAELVKLRQACC------------------------HPKLVMAETDIPSAKLAAL 1273
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
++ ++K +IF+ + L +++ I KG + +DG+T + RQ +V++FQ S
Sbjct: 1274 DELLEELKLNNHKALIFSQFVGHLQLIRQHIEAKGFSYQYLDGSTPQKKRQKSVNAFQ-S 1332
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
E I +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQT V IY A
Sbjct: 1333 GEGDIFLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQTRPVTIYRLIA 1392
Query: 640 KDTTDE 645
++T +E
Sbjct: 1393 QNTIEE 1398
>gi|110800073|ref|YP_695594.1| helicase [Clostridium perfringens ATCC 13124]
gi|110674720|gb|ABG83707.1| putative helicase [Clostridium perfringens ATCC 13124]
Length = 1069
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 235/502 (46%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 570 VLQEIVGKLLNKEFKRKLLPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 627
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 628 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 683
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 684 DFKRGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPS 743
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 744 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 786
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 787 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 837
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 838 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 894
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 895 GESSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGG 947
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 948 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1007
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1008 HRFGQENKVEVIKLVAKDTIEE 1029
>gi|427798209|gb|JAA64556.1| Putative chromatin remodeling complex wstf-iswi small subunit,
partial [Rhipicephalus pulchellus]
Length = 1386
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 125/498 (25%), Positives = 220/498 (44%), Gaps = 98/498 (19%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILR 255
P+QLEGV RF ++ADEMGLGKT+Q I G LV P
Sbjct: 177 PYQLEGVNWLRFSWANHTDTILADEMGLGKTIQTIVFLYSLFKEGHCRGPFLVSAPLSTI 236
Query: 256 LSWAEELERWLPFCLPADIHLV--FGHRN------------------NPVHLTRFPR--- 292
++W E E W P D ++V G ++ NP R +
Sbjct: 237 INWEREFEVWAP-----DFYVVTYIGDKDSRAVIREHEFSFDEKAVRNPNKACRMKKDSA 291
Query: 293 ----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V++ SY ++ + DW +L+VDE+H ++ ++ + VL+ K+
Sbjct: 292 VKFHVLLTSYELVCIDATILGSVDWQVLVVDEAHRLKNNQ-----SKFFKVLN-NYKINY 345
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
+LL+GTP + ++FH +N L P + + D+ QG+ + F D +K
Sbjct: 346 KLLLTGTPLQNNLEELFHLLNFLSP-----------QNFNDL---QGFLNE-FADLAKEE 390
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAK 455
++++L+ LL ++RRLK +L +P K IIR +L + E ++AK
Sbjct: 391 QVKKLHDLLG-CHLLRRLKADVLKGMPSKSEFIIRVDLTPLQKKYYKYILTRNYEALNAK 449
Query: 456 AA------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
+ ++ D +K + P S E R+ +Y+ + K G +
Sbjct: 450 GGSHSVSLLNIMMDLKKCCNHPYLFPAASQE------APRMPNGAYEGTALTKACG--KL 501
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ +H ++ + ++++IF+ K+LD +++F+ +G + RIDG
Sbjct: 502 ILLHKMLRH--------LKETGHRVLIFSQMTKMLDIMEDFLEAEGYKYERIDGGITGSQ 553
Query: 569 RQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
RQ A+ F + ++ AGG+G++ ++A V+ + +P +QA RAHR G
Sbjct: 554 RQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 613
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q + V IY F + + +E
Sbjct: 614 QANKVMIYRFVTRASVEE 631
>gi|242057381|ref|XP_002457836.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
gi|241929811|gb|EES02956.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
Length = 1070
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 143/605 (23%), Positives = 263/605 (43%), Gaps = 103/605 (17%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 197 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 256
Query: 257 SWAEELERWLPFCLPADI--------HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W +E++R+ P H+ R+N + +F V V S+ M + + ++
Sbjct: 257 NWIKEIQRFCPILRAVKFLGNPEERNHI----RDNLLQPGKFD-VCVTSFEMAIKEKSTL 311
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +
Sbjct: 312 RRFSWRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWALL 365
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
N L P + + A+T+ + + G Q ++ Q K +R ++RRL
Sbjct: 366 NFLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRL 410
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K + LPPK+ I+++ + + + +A + KD + + G
Sbjct: 411 KSDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVINAGGER 455
Query: 487 CRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
RL I+ Q E G +G E L + + R ++
Sbjct: 456 KRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLVENAGKMVLLDKLLPKLKERDSR 513
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITA 591
++IF+ ++LD +++++ +G + RIDGNT DR +++ +F +E + ++ A
Sbjct: 514 VLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNRPGSEKFVFLLSTRA 573
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG+G++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E +
Sbjct: 574 GGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 633
Query: 652 NKSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSED 692
K L R T K D LQ + D T DR E+
Sbjct: 634 YKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEE 693
Query: 693 LTLDQVASSDQFQE---LMKVPESSEASDFRAINTNDEITAK--MNDKLLE----ESKTD 743
T + A +F E K+ +++E DF +++ K ++D +E E K +
Sbjct: 694 TTAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDENKVDFKKLVSDNWIEPPRRERKRN 753
Query: 744 HSPTE 748
+S +E
Sbjct: 754 YSESE 758
>gi|242023690|ref|XP_002432264.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
humanus corporis]
gi|212517673|gb|EEB19526.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
humanus corporis]
Length = 1999
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 214/491 (43%), Gaps = 88/491 (17%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q+EG+ R+ +G ++ADEMGLGKT+Q I G LV P +
Sbjct: 706 YQMEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSAPLSTII 765
Query: 257 SWAEELERWLP--FC-----------------LPADIHLVFGHRNNPVHLTRFP-RVVVI 296
+W E E W P +C L + V G R + + V++
Sbjct: 766 NWEREFETWAPDFYCVTYVGDKDSRAVIRENELSFEEGAVRGSRATKIKASSIKFNVLLT 825
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY ++ + DWA+L+VDE+H ++ ++ S+ V A +++ K+ LL+GTP
Sbjct: 826 SYELVSIDAACLGSIDWAVLVVDEAHRLKSNQ--SKFFRVLAGYNISYKL----LLTGTP 879
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++FH +N + + D+ Q F D SK ++ +L+ L
Sbjct: 880 LQNNLEELFHLLNFM-----------CRDKFSDLAAFQNE----FADISKEEQVTKLHDL 924
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
L M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 925 LGPH-MLRRLKTDVLKNMPAKSEFIVRVELSPMQ----KKYYKWILTRNFEALN---PKG 976
Query: 477 SDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPVI 515
+ D CC + +Y+ G+ K SG LS +
Sbjct: 977 GGQQVSLLNIMMDLKKCCNHPYLFSAAAEEAPLSANGTYELQGLIKASGKLILLSKMLKL 1036
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
G ++++IF+ K+LD +++++ +G + RIDG+ RQ A+
Sbjct: 1037 LREQG----------HRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGSITGNLRQEAIDR 1086
Query: 576 FQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
F + A ++ AGG+G++ ++A V+ + +P +QA RAHR GQ++ V I
Sbjct: 1087 FNAPGAPQFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQSNKVMI 1146
Query: 635 YIFCAKDTTDE 645
Y F +++ +E
Sbjct: 1147 YRFVTRNSVEE 1157
>gi|443326475|ref|ZP_21055128.1| DNA/RNA helicase, superfamily II, SNF2 family [Xenococcus sp. PCC
7305]
gi|442793929|gb|ELS03363.1| DNA/RNA helicase, superfamily II, SNF2 family [Xenococcus sp. PCC
7305]
Length = 1398
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 220/476 (46%), Gaps = 57/476 (11%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
+ E+ +LP +L + +Q EG + R G CL AD+MGLGKTLQA+A+
Sbjct: 927 MKELKPQLPSTLQAELRDYQQEGFEWLSRLAHWGVGACL-ADQMGLGKTLQALALILNHA 985
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
G+ L++ P + ++W E E++ P + G R + + + V SY +L
Sbjct: 986 PEGATLIIAPTSVCMNWIAEAEKFAPTL--NSVQFGSGDRQKTLDNLQPFDLFVCSYGLL 1043
Query: 302 HR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP- 356
+ + + + W +++DE+ ++ +KR+ KA + + K K I +GTP
Sbjct: 1044 QQEEVADMLAKVSWQNIVLDEAQAIKNMATKRS------KAAMKLQGKFKLIT--TGTPI 1095
Query: 357 --SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
L +++F IN PGLLG + F + + + + S+ + ++
Sbjct: 1096 ENHLGELWNLFRFIN---PGLLGSWE-QFNQRFA-----------IPIERSQDKQTKKQL 1140
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATN 470
L Q ++RR K +L +LP + + + + E+ +A A+ ++D+E A
Sbjct: 1141 KKLIQPFLLRRTKTQVLEELPSRTEITLHVDMSSEEMAFYEALRQKAIARLSDTEATAGA 1200
Query: 471 DKTPKDSDEHDDSGACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
++ ACC + S L AKL F E L ++
Sbjct: 1201 KHLQVLAEIMKLRRACCNTSLVMSDSNLPSAKLEVFGEVLE--------------ELLDN 1246
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K ++F+ + L +++++ EK I + +DG+T + R+ V FQ E + +I +
Sbjct: 1247 RHKALVFSQFVDHLHIIRDYLDEKNISYQYLDGSTPAKKRKIGVDKFQ-GGEGDVFLISL 1305
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY + T +E
Sbjct: 1306 KAGGTGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVTRGTIEE 1361
>gi|168209499|ref|ZP_02635124.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
gi|170712417|gb|EDT24599.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
Length = 1067
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 235/502 (46%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 568 VLQEIVGKLLNKEFKRKLLPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 625
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 626 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 681
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 682 DFKRGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPS 741
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 742 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 784
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 785 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 835
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 836 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 892
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 893 GESSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGG 945
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 946 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1005
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1006 HRFGQENKVEVIKLVAKDTIEE 1027
>gi|300121515|emb|CBK22034.2| unnamed protein product [Blastocystis hominis]
Length = 508
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 120/481 (24%), Positives = 210/481 (43%), Gaps = 36/481 (7%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA 243
D I K PKSL +LP+QL+GV + +R G ++ADEMGLGKT+Q I + AC A
Sbjct: 9 DPSIIKQPKSLKGKLLPYQLQGVSWMMRLFENGSHGMLADEMGLGKTIQVIGLLACLREA 68
Query: 244 GS---ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN---NPVHLTRFPR----- 292
G +L++ P +W E +WLP H R + R
Sbjct: 69 GVWGPVLIIAPLSTLGNWVSEFAKWLPSVEVIKYHGTKEERKQLRTQLQAEETKRGMDNA 128
Query: 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA--AKVKRIV 350
V V SY M+ + +W LIVDE H + + +E + ++ + A R++
Sbjct: 129 VFVTSYEMVRFDASAFQRVEWFYLIVDEGHRL----KNNECQLMQCLFTFAHSPNTSRLI 184
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
L+GTP + +++ ++ L P + A DF K + V + S+ ++
Sbjct: 185 -LTGTPLQNNLKELWSLMHFLLPDVFSSAA-DFLK-WLGVLACSDRRFDFNNSSSESLKA 241
Query: 411 EELNVLLKQT--VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
+ +N L K +RR+K + + LP K + +L+ K +
Sbjct: 242 DIVNTLRKVVSPFFLRRVKSDIDIYLPRK----VEVLVYTEMTSYEKELYRFERWCDLGM 297
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID--- 525
T + + +L Y SG +++ +I +S +D
Sbjct: 298 TLSARLMSTSRNFRMQILRQLVSHPYNVYEEKSSSG--SYITDESIIQKSSKLTLLDNLL 355
Query: 526 --VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ P+ +++++F ++ L ++++ + +G I G+TL DR + FQ ++
Sbjct: 356 KVLIPKGHRVLVFVQFVETLHLLEDYCTFRGYENCSIHGSTLQSDRDQEIKDFQSREDIP 415
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
I ++ +GG+G++ S+A V+ + +P +QA DRAHR GQ V +Y F T
Sbjct: 416 IFLLTTRSGGLGINLSAADTVILYDSDWNPQQDIQAMDRAHRLGQKRDVVVYRFVTLGTM 475
Query: 644 D 644
D
Sbjct: 476 D 476
>gi|448099761|ref|XP_004199216.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
gi|359380638|emb|CCE82879.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
Length = 857
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 123/494 (24%), Positives = 219/494 (44%), Gaps = 66/494 (13%)
Query: 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-----------S 245
L D I+ F+ FG G L+ADEMGLGKTL IA+ +
Sbjct: 246 LYDCIMGFK----NFG---GNGTLLADEMGLGKTLTTIAVIWTLLKQNPYLEVDSPVCKK 298
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHR--NNPVHL-----TRFPRVVVISY 298
+L+ CP L +W++E ++WL + L ++ V + TR +V++ISY
Sbjct: 299 VLITCPVSLIQNWSKEFKKWLGLNRIGILALNSKQNAADDKVQISSFGKTRVYQVMIISY 358
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
+ RK +++ + LL+ DE H ++ + +V L+ ++K +LL+GTP
Sbjct: 359 EKVLTCRKELMDLNIDLLVCDEGHRLKTA-----TNKVMQTLN-QMQIKMKILLTGTPIQ 412
Query: 359 SRPYDIFHQINMLWPGLLGKAKY---DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
+ Y+ ++ +N + PG+LG + +F K + + ++ DF + + EL
Sbjct: 413 NDLYEFYNIVNFINPGVLGTPSHFQKEFVKPISRARDM-NCTNKVILDFGEE-KSNELLT 470
Query: 416 LLKQTVMIRRL---------KQHLLVQLPPKRRQIIRLLLKRSE-----IVSAKAAV--- 458
L +Q V+ R K +++ PP Q+ S + ++A+V
Sbjct: 471 LTRQFVLRRSSSVLSHVLPDKTDIIIFCPPSSLQLFMFKAISSSQAFNSFLQSQASVNNS 530
Query: 459 -GVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE 517
G+I +K + + + C+ KI + L SG L P++ E
Sbjct: 531 LGIITVMKKLCNSPSLLANDKLFKEIIKSCQESKIDLESLHKRYSSGKVNLLI--PLLLE 588
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
+ K+++ +++ + LD + + + I F+R+DG+TL + R + V+ F
Sbjct: 589 --------ICELKEKIVLISNYTQTLDLFENILRKLNISFLRLDGSTLGKSRDNIVNEFN 640
Query: 578 LSNEVKIAIIGITA--GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
S K ++ ++A GG GL+ A ++ + +PS+ LQA R HR GQ V IY
Sbjct: 641 NSTFEKASVFLLSAKSGGFGLNLIGASRLILFDNDWNPSVDLQAMARIHRDGQKKPVFIY 700
Query: 636 IFCAKDTTDESHWQ 649
DE +Q
Sbjct: 701 RLFTTGCIDEKIFQ 714
>gi|393218982|gb|EJD04470.1| SNF2-family ATP dependent chromatin remodeling factor snf21
[Fomitiporia mediterranea MF3/22]
Length = 1400
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/518 (24%), Positives = 224/518 (43%), Gaps = 100/518 (19%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAAC 239
+ E I K P L+ L +QL+G++ + R G ++ADEMGLGKT+Q I++
Sbjct: 495 IKEKISKQPNILVGGTLKEYQLKGLQWMVSLYNNRLNG--ILADEMGLGKTIQTISLITF 552
Query: 240 FISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---- 291
I G LV+ P +W E +W P ++ NP+ +
Sbjct: 553 LIETKKQRGPFLVIVPLSTMTNWTGEFAKWAPAVK------TISYKGNPLQRRQLQNEIR 606
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
+V++ +Y + + R + + W +I+DE H ++ ++ ++ L + +
Sbjct: 607 MGNFQVLLTTYEYIIKDRPVLSKLKWLHIIIDEGHRMKNTQ-----SKLSQTLSMYYHSR 661
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF--S 405
++L+GTP + + + LW L + K + VK+ + F + S
Sbjct: 662 YRLILTGTP-------LQNNLPELWALL----NFALPKIFNSVKSFDEWFNTPFANSGSS 710
Query: 406 KGVRLEELNVLL--------KQTVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAK 455
+ L E LL + ++RRLK+ + +LP K +II++ + +S++
Sbjct: 711 DKIELNEEEALLIIRRLHKVLRPFLLRRLKKDVESELPDKVEKIIKIRMSALQSQLYKQM 770
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI 515
+I D KDA T G L Q I + HP +
Sbjct: 771 KKYKMIADG-KDAKGKST----------GGVKGLSNELMQLRKICQ----------HPFL 809
Query: 516 AES-------DGAAD-------------IDVNPR----SNKMIIFAHHLKVLDGVQEFIS 551
+S G D + V P+ ++++IF KV+D +++F+
Sbjct: 810 FDSVEDKISPSGMIDDNIWRVAGKFELLVRVLPKFFATGHRVLIFFQMTKVMDIMEDFMK 869
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+G ++R+DG T +R S V F + +++ I+ AGG+GL+ SA V+ +
Sbjct: 870 SQGWQYLRLDGGTKTEERASHVQVFNAKDSPIQVFILSTRAGGLGLNLQSADTVIIFDSD 929
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+P LQA+DRAHR GQT AV I F + + +E+ +
Sbjct: 930 WNPHADLQAQDRAHRIGQTKAVRILRFITEKSVEEAMY 967
>gi|297569291|ref|YP_003690635.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925206|gb|ADH86016.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
Length = 1309
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 214/460 (46%), Gaps = 62/460 (13%)
Query: 204 FQLEGVRFGLRRG-----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258
+QL G R+ LR+ G CL AD+MGLGKT+QA+A+ + G LVV P L L+W
Sbjct: 857 YQLTGYRW-LRQMADLQLGACL-ADDMGLGKTIQALALLLARSNQGPGLVVAPTSLCLNW 914
Query: 259 AEELERWLPFCLPADIHLV-FGHRNNPVHLTRFPR--VVVISYTMLHRLRKSMIEQDWAL 315
E R+ P + L+ + RN LT+ +VV SY ML R + W
Sbjct: 915 QAEAHRFAP-----GLRLIHYSGRNRSQLLTQLGAGDLVVCSYGMLQRDAGVIGAVHWHT 969
Query: 316 LIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINM 370
+++DE+ ++ +KR+ +A + + K I +GTP L+ + +F IN
Sbjct: 970 IVLDEAQAIKNFLAKRS------RAAMQLQGDCKLIT--TGTPLENHLTELWTLFRFIN- 1020
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
PGLLG + F K + G Q Q Q K L ++RRLK +
Sbjct: 1021 --PGLLGSLE-QFRKKFIIPIEQHGDQ-QARQRLKK----------LLTPFILRRLKNEV 1066
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD-----SDEHDDSGA 485
L +LPP+ +++ + R E +A + K+ N P ++ A
Sbjct: 1067 LQELPPRTDITLQVSMHREEAALYEALRRQARATLKNGANRDRPGAPLQVLAEIMKLRRA 1126
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
CC + L + + G + L + V+AE + +++++F+ + L
Sbjct: 1127 CCHPRLV----LPDSTMPGAKLEL-LTKVVAE--------LLENRHRILVFSQFVDHLAI 1173
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
V++++ E+ I + DG T R RQ V FQ + K+ +I + AGG+GL+ ++A V+
Sbjct: 1174 VRQYLDEQQISYQYFDGATPARVRQQRVRDFQ-AGRGKLFLISLRAGGLGLNLTAADYVI 1232
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ +P++ QA DRAHR GQ V IY T +E
Sbjct: 1233 HLDPWWNPAVEEQASDRAHRIGQDKPVTIYRLITTGTIEE 1272
>gi|110803396|ref|YP_698309.1| DNA/RNA helicase, SNF2 [Clostridium perfringens SM101]
gi|110683897|gb|ABG87267.1| putative helicase [Clostridium perfringens SM101]
Length = 1069
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 237/512 (46%), Gaps = 103/512 (20%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 570 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 627
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 628 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 683
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 684 DFKRGLGIKIEEKNLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPS 743
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 744 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 786
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 787 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEEVLSELPEKLEKKYLVEM 837
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
K+ ++ S + N ++ +++K+ +D KI+ A L+
Sbjct: 838 KGKQKQLYSFYVN-AIKNQLNENKSSEKSGRD--------------KINL----FAYLTK 878
Query: 505 FREWLSIHPVIAESD---GAADI--------DVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
RE + + P + D G++ + D + K+++F+ VL ++E ++
Sbjct: 879 LRE-ICLDPSLVVPDYKGGSSKLTVVKEIVKDASESGKKILLFSQFTSVLQKIEEDFKKE 937
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
I ++ +DG T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P
Sbjct: 938 DISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNP 997
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ QA DRAHR GQ + V + AKDT +E
Sbjct: 998 AVEDQATDRAHRFGQENKVEVIKLVAKDTIEE 1029
>gi|422873728|ref|ZP_16920213.1| putative helicase [Clostridium perfringens F262]
gi|380305546|gb|EIA17824.1| putative helicase [Clostridium perfringens F262]
Length = 1067
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 235/502 (46%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 568 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITYLGFGG--VLADDMGLGK 625
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 626 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 681
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 682 DFKRGLGIKVEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPV 741
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 742 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 784
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 785 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 835
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 836 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 892
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E ++ I ++ +DG
Sbjct: 893 GGSSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKEDISYLYLDGG 945
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 946 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1005
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + AKDT +E
Sbjct: 1006 HRFGQENKVEVIKLVAKDTIEE 1027
>gi|406677789|ref|ZP_11084969.1| hypothetical protein HMPREF1170_03177 [Aeromonas veronii AMC35]
gi|404623596|gb|EKB20446.1| hypothetical protein HMPREF1170_03177 [Aeromonas veronii AMC35]
Length = 1291
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 60/466 (12%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 835 PDELLTSLRDYQKEGVRWMATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 893
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF---GHRNNPVHLTRFPRVVVISYTMLHRLRK 306
P + +W EE+ R+ P D+ +VF R + + +V++I+Y ML L +
Sbjct: 894 VPKSVVTNWQEEVARFAPEL---DV-VVFENPAEREGMIREAKAGQVILINYGMLGSLAE 949
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 950 ALKARRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGELWS 1003
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV-- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 1004 LFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVISP 1042
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1043 FILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQSA 1090
Query: 481 DDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D L G + L + EW + E+ + ++ +++++F+
Sbjct: 1091 DGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAID-GGHRVLVFSQF 1149
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +L ++ I +K + +DG + RQ ++ F+ EV + +I + AGG GL+ +
Sbjct: 1150 VDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFR-HEEVPLFLISLKAGGTGLNLT 1208
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1209 QADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1254
>gi|307105253|gb|EFN53503.1| hypothetical protein CHLNCDRAFT_136836 [Chlorella variabilis]
Length = 445
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 153/342 (44%), Gaps = 56/342 (16%)
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQ-----GYQGQLF-QDFSKGVR-------------- 409
ML PG LG A +F YCD K Q Y+G F Q G+R
Sbjct: 1 MLRPGFLG-APQEFGLRYCDGKPAQYNMQATYRGYDFRQAQGAGLRSGRGGRWPAAAAGG 59
Query: 410 ---LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK 466
L EL+ LL+ +M+RRLK+ +L LP K R+ I + + + + V + E+
Sbjct: 60 SSNLVELHELLESHIMVRRLKKDVLDDLPDKIRKRIPIEPDPAHVPGLQKTVREMKQVEQ 119
Query: 467 DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS-IHPVIAESDGAADID 525
D G+IS +E A+ E+ P + A +
Sbjct: 120 DEVG-------------------GRISGEEAVRARQQLLSEYYRRTGPAKVQDARAHIVS 160
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN-----------TLPRDRQSAVH 574
+ K+++FAHH VLDG+Q + E+ + VRIDG L R++AV
Sbjct: 161 LLEAGVKVLVFAHHQAVLDGLQAALREEQVAHVRIDGQASAPLAAAASSVLNERRKAAVD 220
Query: 575 SFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
+FQ + A++ ITA G G+ + AQ VVF+EL +P ++QAEDRAHR GQ + +
Sbjct: 221 TFQRDRACRAALLSITAAGTGITLTEAQAVVFVELYWNPGQLVQAEDRAHRLGQRRVLEV 280
Query: 635 YIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
+ A T D++ W+ L V A G+ DA Q G
Sbjct: 281 HYLVAPGTADDTIWRLCQHKLGVVGGAM-GEEDAEQAFGAVG 321
>gi|449041451|gb|AGE82399.1| DNA/RNA helicase [Pseudomonas syringae pv. actinidiae]
gi|449041576|gb|AGE82523.1| DNA/RNA helicase [Pseudomonas syringae pv. actinidiae]
Length = 650
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 128/488 (26%), Positives = 221/488 (45%), Gaps = 85/488 (17%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ IG+ S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTSAEIGEALASF--SLMDHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT 288
KT QA+ A +LV+ L ++W E+ P + + +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP--------------DAQISMQ 318
Query: 289 RFPRV---VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVA 343
+F ++++Y L M +A++++DE+H R EP + D+A
Sbjct: 319 KFDTAAGWIIVNYERLGDF--VMHASSFAVMVIDEAH------RLKEPTAAWTRHGFDIA 370
Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403
A+V+ LL+GTP L+R ++ H + L +G + +C + + G +
Sbjct: 371 AQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGHLPLN---EFC-----ERFAGS--PE 419
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIND 463
F K +R E + +L++ ++ +L L K+RQ + + L + E
Sbjct: 420 FRKTLRDEISDWMLRR-------RKDVLPGLKGKQRQTVPVTLSKEE------------- 459
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+D N SD+H A+L G R+ L V +D A+
Sbjct: 460 --RDEYNQIM--RSDQHR-----------------FARLGGLRQLLERVKVRIVADLMAE 498
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+DV+ +K+I+F + + + +++ + GIG V + G+ P+ RQ A+ +FQ + +
Sbjct: 499 LDVD---DKVILFCEYQESVATLRDHCTSLGIGCVTLVGSDTPKKRQKAIDAFQEDPDCR 555
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT
Sbjct: 556 VFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRLVVVKIPLAEDTI 615
Query: 644 DESHWQNL 651
D+ WQ L
Sbjct: 616 DQQLWQML 623
>gi|440492849|gb|ELQ75382.1| Chromatin remodeling complex WSTF-ISWI, small subunit
[Trachipleistophora hominis]
Length = 833
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 131/554 (23%), Positives = 242/554 (43%), Gaps = 118/554 (21%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAA---CFISAGS-I 246
PK + + +Q+EGV + + + C++ADEMGLGKTLQ I F+ +
Sbjct: 60 PKYIRGTLREYQIEGVNWLISMHEKNINCILADEMGLGKTLQTITFLGYLKSFLKNDTPH 119
Query: 247 LVVCPAILRLSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
L++ P L +W E +++LP F A H+ + T + VV+ +Y M
Sbjct: 120 LLIVPKSLLHNWKAEFKKFLPSFRLFTFHAS-HVEIKEMEETMENTNYD-VVITTYEMCI 177
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI------VLLSGTP 356
+K W L++DE+H ++ + +K+ RI +LL+GTP
Sbjct: 178 SAKKVFQRIQWCYLVIDEAHRIKNEA------------SLLSKIVRIFRCEHRLLLTGTP 225
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++++ +N L P L + D + + + Q+ D G+ ++L +
Sbjct: 226 LQNNVHELWALLNFLDPKL-----------FKDPEQFEKWITQMENDNKGGI--DQLRKV 272
Query: 417 LKQTVMIRRLKQHLLVQLPPKR------------RQIIRL--------LLKRSEIVSAKA 456
L Q +RR K+ + L PK+ R + ++ LL + EI S+
Sbjct: 273 L-QLFFLRREKRDVEKTLLPKKVINLYPQLTAMQRNLYKMILEKDLTPLLHKREIKSS-- 329
Query: 457 AVGVINDSEK--------DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFR 506
+ V+ K D P +DEH +SG L K+
Sbjct: 330 LLNVVIQLRKCCNHPYLFDGMEPGPPYTTDEHLVYNSGKMVYLDKLL------------- 376
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
++ R+++++IF ++LD ++++ + + + RIDG+T
Sbjct: 377 -----------------TEMKRRNSRVLIFTQMTRMLDILEDYCTMREYEYRRIDGSTSA 419
Query: 567 RDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
+R A+ F N +V + ++ AGG+G++ ++A V+ + +P + LQA+DRAHR
Sbjct: 420 AERGEAIDDFNAENSDVFVFLLSTRAGGLGINLATADIVIMYDSDWNPQIDLQAQDRAHR 479
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC--------VSSATNGKYDALQEIAVEGV 677
GQT V ++ F ++T +E K L+ +++++N L +I EGV
Sbjct: 480 IGQTKQVFVFKFITENTIEEKIIYRALKKLKLDEILVKNNLNTSSNINEKELIDILAEGV 539
Query: 678 SYLEMSDKTDRGSE 691
+ DK ++ +E
Sbjct: 540 E--NIFDKEEKTAE 551
>gi|26554357|ref|NP_758291.1| helicase/SNF2 domain-containing protein [Mycoplasma penetrans HF-2]
gi|26454367|dbj|BAC44695.1| helicase with SNF2 domain [Mycoplasma penetrans HF-2]
Length = 1041
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 224/474 (47%), Gaps = 57/474 (12%)
Query: 191 GKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
+LP +L +++ +Q+ G + L GG ++ADEMGLGKT+Q I++ +
Sbjct: 567 NELPVNLKNILKKYQVAGYLWLKKLLHLNAGG--ILADEMGLGKTMQTISLLSDVYYNNK 624
Query: 246 I----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML 301
L+VCP+ L +W +EL ++ PF I RN ++ +++V SY +L
Sbjct: 625 TKLPSLIVCPSSLVYNWKKELSQFAPFLKIGIIDGTQLERNEVLNNIHNYQIIVTSYHLL 684
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
++ + ++ L ++DE+ ++ + T ++ K+V +K K + L+GTP +
Sbjct: 685 NKDIEVYRNMEFYLQVLDEAQKIK-NHYTQFSKDTKSV---NSKYK--IALTGTPIENNL 738
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT- 420
+++ + + PG L YD+ K + LFQD E L L +
Sbjct: 739 LELWSIFDYIMPGFL----YDY-KLF----------KSLFQDKIIAKDEEALKKLKTKIS 783
Query: 421 -VMIRRLKQHLLVQLPPKRRQIIRLLL--KRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++RR K+ +L +LP K +I+ K+ E+ A+ + I + + DKT
Sbjct: 784 PFILRRTKEEVLKELPSKTYKIMTCEFEDKQKEMYYAELSKSQI--AIRKGIEDKTINKQ 841
Query: 478 DEHDDS------GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531
S CC K+SY+ + ++G + L I + D+ ++
Sbjct: 842 GAFIFSVLTKLRQICCS-PKLSYEN---SDINGSKFNLCIDLIK---------DLIKNND 888
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++F+ ++D + + + + I F+ + G T ++R V+ F N +KI +I + A
Sbjct: 889 KILLFSQFTSMIDLIAQELKKLKINFLVLTGETNKKERMELVNEFNNKNNIKIFLISLKA 948
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL +SA V+ + + SL QA DRAHR GQ V IY KD+ +E
Sbjct: 949 GGTGLTLTSANAVIHYDPWWNLSLENQATDRAHRIGQEKNVFIYKLIVKDSIEE 1002
>gi|423202230|ref|ZP_17188809.1| hypothetical protein HMPREF1167_02392 [Aeromonas veronii AER39]
gi|404615382|gb|EKB12354.1| hypothetical protein HMPREF1167_02392 [Aeromonas veronii AER39]
Length = 1291
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 66/469 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 835 PDELLTSLRDYQKEGVRWMATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 893
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------VVVISYTMLHR 303
P + +W EE+ R+ P D+ +VF NP R R V++I+Y ML
Sbjct: 894 VPKSVVTNWQEEVTRFAPEL---DV-VVF---ENPAERERIIRDAKAGQVILINYGMLGS 946
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
L +++ + W+ +++DE+ + + + + K + + + + LSGTP L
Sbjct: 947 LAEALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGE 1000
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F IN PGLLG G+ + F K V+ + LL+
Sbjct: 1001 LWSLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAV 1039
Query: 421 V---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1040 ISPFILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQV 1087
Query: 478 DEHDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
D L G + L + EW + E+ + ++ +++++F
Sbjct: 1088 QSADGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAID-GGHRVLVF 1146
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + +L ++ I +K + +DG + RQ ++ F+ EV + +I + AGG GL
Sbjct: 1147 SQFVDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFR-HEEVPLFLISLKAGGTGL 1205
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1206 NLTQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1254
>gi|423210295|ref|ZP_17196849.1| hypothetical protein HMPREF1169_02367 [Aeromonas veronii AER397]
gi|404616183|gb|EKB13141.1| hypothetical protein HMPREF1169_02367 [Aeromonas veronii AER397]
Length = 1291
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 60/466 (12%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 835 PDELLTSLRDYQKEGVRWMATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 893
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF---GHRNNPVHLTRFPRVVVISYTMLHRLRK 306
P + +W EE+ R+ P D+ +VF R + + +V++I+Y ML L +
Sbjct: 894 VPKSVVTNWQEEVARFAPEL---DV-VVFENPAEREGIIREAKAGQVILINYGMLGSLAE 949
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 950 ALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGELWS 1003
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV-- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 1004 LFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVISP 1042
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1043 FILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQSA 1090
Query: 481 DDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D L G + L + EW + E+ + ++ +++++F+
Sbjct: 1091 DGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAID-GGHRVLVFSQF 1149
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +L ++ I +K + +DG + RQ ++ F+ EV + +I + AGG GL+ +
Sbjct: 1150 VDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFR-HEEVPLFLISLKAGGTGLNLT 1208
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1209 QADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1254
>gi|94309439|ref|YP_582649.1| Superfamily II DNA/RNA helicase, SNF2 family [Cupriavidus
metallidurans CH34]
gi|93353291|gb|ABF07380.1| Superfamily II DNA/RNA helicase, SNF2 family [Cupriavidus
metallidurans CH34]
Length = 1025
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/507 (26%), Positives = 237/507 (46%), Gaps = 69/507 (13%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L+ + P+QLEG R+ + G CL AD+MGLGKTLQ++A+ + G LV
Sbjct: 545 VPPTLVAELRPYQLEGFRWMMSLAEAGFGACL-ADDMGLGKTLQSLAVLLARAAGGPALV 603
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
V P + +WA E R+ P +H+ G R V +V++SY +L + RK+
Sbjct: 604 VAPTSVCGNWATEARRFAPAL---RVHVYADGDREAIVGQAAAHDLVIVSYNLLQQARKA 660
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++ W ++ DE+ S + +A+ + A + + LSGTP +R +++
Sbjct: 661 FCDRHWHTVVADEAQ----SFKNPSSRRAQAMFALPADCR--IALSGTPVENRLAELWAV 714
Query: 368 INMLWPGLLGK-AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+ PGLLG A+++ + + + + ++ R + L ++ V+ RR
Sbjct: 715 MRFCVPGLLGSLARFN-----------EHFANPIERSGARDPR-QRLRRMIAPFVL-RRT 761
Query: 427 KQHLLVQLPPKRRQIIRLL-----------LKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
K +L +LPP+ +IR+ L+R + A+ A+ + +K A T
Sbjct: 762 KAQVLDELPPRTELVIRVTPEPTEAAHYEALRRQALSEAERAL-LRPRKDKKAPAAMTEP 820
Query: 476 DSDEHDDSG------ACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
++ H + A C RL + G AK+ F E AA + N
Sbjct: 821 EARIHVLAQLMRMRRAACDPRLVTPDVGQPG-AKVRAFAEL------------AATLAAN 867
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ + L +++ + + G+ + +DG T +R V +FQ + E + +I
Sbjct: 868 --GHKTLVFSQFVDFLQMLRQALVDAGLAWQYLDGATPAGERTRRVAAFQ-AGEGDVFLI 924
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
+ AGG GL+ ++A +V + +P+ QA RAHR GQ V +Y A T +E
Sbjct: 925 SLKAGGFGLNLTAADYIVIADPWWNPAAEDQAMGRAHRIGQQRPVTVYRLIAAGTIEE-R 983
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAV 674
+L++ R ++ +G DA+ A+
Sbjct: 984 IVDLHQGKRALA---DGVLDAMDGEAI 1007
>gi|115436572|ref|NP_001043044.1| Os01g0367900 [Oryza sativa Japonica Group]
gi|57012942|sp|Q7G8Y3.2|ISW2_ORYSJ RecName: Full=Probable chromatin-remodeling complex ATPase chain;
AltName: Full=ISW2-like; AltName: Full=Sucrose
nonfermenting protein 2 homolog
gi|54290802|dbj|BAD61441.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
gi|57900237|dbj|BAD88342.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
gi|58737200|dbj|BAD89475.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
gi|113532575|dbj|BAF04958.1| Os01g0367900 [Oryza sativa Japonica Group]
gi|215740512|dbj|BAG97168.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618445|gb|EEE54577.1| hypothetical protein OsJ_01780 [Oryza sativa Japonica Group]
Length = 1107
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 246/566 (43%), Gaps = 89/566 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 234 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 293
Query: 257 SWAEELERWLPFCLPADIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W +E++R+ P RN N + +F V V S+ M + + ++
Sbjct: 294 NWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFD-VCVTSFEMAIKEKTTLKRFS 352
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N L
Sbjct: 353 WRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLNFLL 406
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P + + A+T+ + + G Q ++ Q K +R ++RRLK +
Sbjct: 407 PEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLKSDV 451
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
LPPK+ I+++ + + + +A + KD + + G RL
Sbjct: 452 EKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVINAGGERKRLL 496
Query: 491 KISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
I+ Q E G +G E L + + R ++++IF
Sbjct: 497 NIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLVENAGKMVLLDKLLPKLKDRDSRVLIF 554
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVG 595
+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+G
Sbjct: 555 SQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLG 614
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E + K L
Sbjct: 615 INLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 674
Query: 656 ----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDLTLD 696
R T K D LQ + D T DR E+ T +
Sbjct: 675 ALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAE 734
Query: 697 QVASSDQFQE---LMKVPESSEASDF 719
A +F E K+ +++E DF
Sbjct: 735 LDAKMKKFTEDAIKFKMDDTAELYDF 760
>gi|429753325|ref|ZP_19286134.1| protein, SNF2 family [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429173991|gb|EKY15496.1| protein, SNF2 family [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 951
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 136/506 (26%), Positives = 223/506 (44%), Gaps = 81/506 (16%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRG----GRCLIADEMGLGKTLQ 232
PE L + + E + P L L P+Q+EGV + L+ G CL AD+MGLGKTLQ
Sbjct: 454 PE-LKPQTIIEKVNYTPSPNLRATLRPYQVEGVEWLLQHYHNGVGACL-ADDMGLGKTLQ 511
Query: 233 AIAIAAC--------------FISAGS-------ILVVCPAILRLSWAEELERWLP-FCL 270
IA+ SA +LV+ P+ L +W +E +R+ P F
Sbjct: 512 TIALLVAIHDTLPLKENNFTDLFSATEPQKETLKVLVILPSSLLFNWYDETKRFAPHFKC 571
Query: 271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330
I + LT + VV SY ++ R K + + ++ +I+DES ++
Sbjct: 572 TQYIGSSSERKTKIRRLTNYD-VVFTSYPIVERDGKELEKLEFRYIILDESQRIKNKNSK 630
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+ KA+ A K + + LSGTP + D++ Q+ + PG LG Y+F + +V
Sbjct: 631 T----FKAI--NALKAEHRIALSGTPIENALSDLWAQMQFINPGQLGT--YNFFHKHYEV 682
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE 450
+ + Q LEEL L+ + ++ RR K+ +L LP Q L
Sbjct: 683 EISKKKNPQ---------ALEELKTLVGKHIL-RRTKEQVLSDLPDIEEQ-----LAYCP 727
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ A+A + EK ++ + S+ + A L K+ +S
Sbjct: 728 MSEAQAQWY---EREKSKVRNQLLEASEPISEFNALQMLTKL--------------RQIS 770
Query: 511 IHPVIAESDGAADI-----------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
HPV+A++ ++ +K +IF+ +K L+ + + I + +
Sbjct: 771 NHPVLADAQSTIPSGKYQEVISYMETLHSAQHKALIFSSFVKHLELFEAWCKTHKIKYSK 830
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
+ G T +R+S V +FQ +V I + AG VGL+ + A V+ L+ +P QA
Sbjct: 831 LTGATATHERKSQVEAFQNQEDVSFFFISLKAGEVGLNLTKASYVLLLDPWWNPFSERQA 890
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDE 645
RAHR GQ + VN+ F +KDT +E
Sbjct: 891 IARAHRIGQENKVNVIRFVSKDTIEE 916
>gi|408421186|ref|YP_006762600.1| ATP-dependent helicase [Desulfobacula toluolica Tol2]
gi|405108399|emb|CCK81896.1| predicted uncharacterized ATP-dependent helicase [Desulfobacula
toluolica Tol2]
Length = 1392
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 206/437 (47%), Gaps = 47/437 (10%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKT+QA+A G LVV P + +W EE + P P L
Sbjct: 958 GACL-ADDMGLGKTVQALAAILLHAGDGPGLVVAPLSVMANWQEECRNFAPTLNP----L 1012
Query: 277 VF--GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPE 334
VF G R N + +V+ SY +L + + DW +++DE+ ++ K +
Sbjct: 1013 VFGPGDRQNFLDGLGPFDLVISSYGLLQVEAEKLAGVDWQSIVLDEAQAIKNMKT----K 1068
Query: 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
KA + + ++ K I +GTP + +++ N L PGLLG T+ K
Sbjct: 1069 RSKAAMALNSRFKMIT--TGTPVENHLDELWTLFNFLNPGLLG--------TFNRFKNSF 1118
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
+ QD RL++ L + ++RRLK +L +LP K +++ + + E V
Sbjct: 1119 AVPIERDQDKDASRRLKK----LIRPFILRRLKTDVLKELPEKTEITLQVEMSQEEAVLY 1174
Query: 455 KA----AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI--AKLSGFREW 508
+A A+ I +++ ++ CC + + GI +KL F +
Sbjct: 1175 EAQRIKAIANIENADDKPGQKHLRILAELMKLRQICCN-PALVLPDAGIDSSKLRVFGD- 1232
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
++AE + ++K ++F+ + L +++F+ K I + +DG+T +
Sbjct: 1233 -----IVAE--------LLENNHKALVFSQFVGHLTILRKFLDAKNIAYQYLDGSTAVKT 1279
Query: 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
RQ + +FQ + + +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ
Sbjct: 1280 RQERIKAFQ-NGSGDLFLISLKAGGFGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQ 1338
Query: 629 TSAVNIYIFCAKDTTDE 645
V +Y KD+ +E
Sbjct: 1339 VRPVTVYRLVVKDSIEE 1355
>gi|449041708|gb|AGE82654.1| DNA/RNA helicase [Pseudomonas syringae pv. actinidiae]
Length = 650
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/488 (26%), Positives = 221/488 (45%), Gaps = 85/488 (17%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ I K S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSITNTELTSAEIDKALASF--SLMDHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT 288
KT QA+ A +LV+ L ++W E+ P + + +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWHREILMVFP--------------DAQISMQ 318
Query: 289 RFPRV---VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE--VKAVLDVA 343
+F ++++Y L M +A++++DE+H R EP + D+A
Sbjct: 319 KFDTAAGWIIVNYERLGDF--VMHASSFAVMVIDEAH------RLKEPTAAWTRHGFDIA 370
Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403
A+V+ LL+GTP L+R ++ H + L +G + +C + + G +
Sbjct: 371 AQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGHLPLN---EFC-----ERFAGS--PE 419
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIND 463
F K +R + + +L++ ++ +L L K+RQ + + L + E
Sbjct: 420 FRKTLRDQISDWMLRR-------RKDVLPGLKGKQRQTVPVTLSKEE------------- 459
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+D N SD+H A+L G R+ L V +D A+
Sbjct: 460 --RDEYNQIM--RSDQHR-----------------FARLGGLRQLLERVKVRIVADLMAE 498
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+DV+ +K+I+F + + + ++E ++ GIG V + G+ P+ RQ A+ +FQ + +
Sbjct: 499 LDVD---DKVILFCEYQESVATLREHCADLGIGCVTLVGSDTPKKRQKAIDAFQEDPDCR 555
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT
Sbjct: 556 VFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRLVVVKIPLAEDTI 615
Query: 644 DESHWQNL 651
D+ WQ L
Sbjct: 616 DQQLWQML 623
>gi|298157188|gb|EFH98276.1| DNA helicase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 650
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/486 (26%), Positives = 221/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K +S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKALESF--SLMDHQPGGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAG---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L K +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVKH--ASSFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRAEIADWMLRR-------RKDVLPNLKGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N D+ A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIMRSDTHR-------------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E +G+G V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVASLREHCLARGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRLVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|426197234|gb|EKV47161.1| chromodomain-helicase DNA-binding protein [Agaricus bisporus var.
bisporus H97]
Length = 1298
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/492 (24%), Positives = 214/492 (43%), Gaps = 107/492 (21%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
FQL G+ + G ++ADEMGLGKT+Q +A + G LV+ P
Sbjct: 253 FQLTGLNWLAYVWSNGDNGILADEMGLGKTVQTVAFISWLFHEMQQYGPFLVIVPLSTIT 312
Query: 257 SWAEELERWLPFCLPADIHLV----------------FGHRNNPVHLTRFPRVVVISYTM 300
+W + W P DI+++ FG N + + V++ +Y +
Sbjct: 313 AWQMQFNLWAP-----DINVITYIGTAPAREVIRTHEFGPSNKKLKMN----VLLTTYEL 363
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R K +++ W LL VDE+H ++ S+ S+ E A+K+ L++GTP +
Sbjct: 364 TLRDAKELVDIKWQLLAVDEAHRLKNSE--SQLYEALRCFSAASKL----LITGTPLQNN 417
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
++ ++ L P K+ + D +++EL++ L ++
Sbjct: 418 VRELLSLMHFLMPD-----KFALTNEFD------------LNDADHEEKIKELHLQL-ES 459
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRL------------LLKRSEIVSAKAAVGVINDSE--- 465
+M+RRLK+ +L LP K +I+R+ +L ++ K+A G N S
Sbjct: 460 LMLRRLKRDVLTSLPTKSERILRVEMSALQTHFYKNILTKNFAGLVKSANGNNNISLLNI 519
Query: 466 ----KDATND-------KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514
K A N +T DS+E G GK+ + +A+L
Sbjct: 520 AMELKKAANHPYLFDGAETRSDSNEETLKGLVMNSGKMVLLDKLLARL------------ 567
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
DG ++++IF+ +++LD + +++S +G R+DG R+ ++
Sbjct: 568 --RQDG----------HRVLIFSQMVRMLDILSDYMSLRGYIHQRLDGMVASEQRKKSIA 615
Query: 575 SFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F A ++ AGG+G++ +A V+ + +P LQA RAHR GQ S V+
Sbjct: 616 HFNAPGSPDFAFLLSTRAGGLGINLETANTVIIFDSDWNPQNDLQAMARAHRIGQKSHVS 675
Query: 634 IYIFCAKDTTDE 645
+Y F +KDT +E
Sbjct: 676 VYRFVSKDTMEE 687
>gi|410643571|ref|ZP_11354067.1| helicase [Glaciecola chathamensis S18K6]
gi|410136981|dbj|GAC12254.1| helicase [Glaciecola chathamensis S18K6]
Length = 1434
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 225/481 (46%), Gaps = 60/481 (12%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFIS 242
+ ++ +P + + +QL G + R G CL AD+MGLGKTLQA+AI +
Sbjct: 953 NALMPNIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRAN 1011
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-------HLTRFPRVVV 295
G LV+ P + +W +E ++ P I VF N + L F V+
Sbjct: 1012 EGPSLVIAPTSVCFNWQQEALKFAPTL----IIKVFADSTNTIAREVLLSELGPFD-CVI 1066
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
ISY +L R + + + W ++ DE+ ++ +KRT KA + + K I +
Sbjct: 1067 ISYGLLQRESEILKKVQWHSIVADEAQALKNPLAKRT------KAAYALKSDFKMIT--T 1118
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP +L+ + +F IN PGLLG K + ++ Q +D +
Sbjct: 1119 GTPIENNLTELWSLFRFIN---PGLLGNIKRFAQRFSLPIENAQ-------EDPLAARKA 1168
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS-- 464
+ L Q ++RR+K +L +LP + IR+ + E +A A+ IN S
Sbjct: 1169 SQALKTLIQPFILRRMKNQVLTELPSRTEINIRVEMSSQERDFYEALRLNAIDNINQSGQ 1228
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
+ +A+ + ++ ACC +L +A+ + I + A
Sbjct: 1229 QANASEQRIRMLAELVKLRQACCN------PKLVMAETT-------IPSAKLAALDALLE 1275
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
++ ++K +IF+ + L +++ + +KG + +DG+T + RQ++V++FQ + I
Sbjct: 1276 ELKLNNHKALIFSQFVGHLQLIKQHLEDKGFDYQYLDGSTPQKQRQASVNAFQ-RGQGDI 1334
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +
Sbjct: 1335 FLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLITQNTIE 1394
Query: 645 E 645
E
Sbjct: 1395 E 1395
>gi|169343905|ref|ZP_02864901.1| putative helicase [Clostridium perfringens C str. JGS1495]
gi|169298025|gb|EDS80116.1| putative helicase [Clostridium perfringens C str. JGS1495]
Length = 1065
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/509 (25%), Positives = 233/509 (45%), Gaps = 99/509 (19%)
Query: 184 EVVDEMIGK------LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQ 232
E+V++++ K +PK+L + P+Q EG ++ L GG ++AD+MGLGKTLQ
Sbjct: 569 EIVEKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGKTLQ 626
Query: 233 AIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR-FP 291
IA + SI+VV P + +W +E E++ P + LV G ++ + R F
Sbjct: 627 IIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---RIRVGLVHGSKSKRDKVLRDFK 682
Query: 292 R--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKR 329
R V++ +Y L K+ + I+DE+ +++ ++
Sbjct: 683 RGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPTAQA 742
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 743 TLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF------------ 782
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRLLLK 447
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ + K
Sbjct: 783 --TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEMKGK 836
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ ++ S K K+ + S C KI+ A L+ RE
Sbjct: 837 QKQLYSFYV---------------KAIKNQLNENKSSEKCGRDKINL----FAYLTKLRE 877
Query: 508 WLSIHPVIAESD---GAADI--------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
+ + P + D G++ + D + K+++F+ VL ++E ++ I
Sbjct: 878 -ICLDPSLVVPDYTGGSSKLTVVKEIVKDASESGKKILLFSQFTSVLKKIEEDFKKEDIS 936
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
++ +DG T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++
Sbjct: 937 YLYLDGGTSAKDRVERVKRFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVE 996
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA DRAHR GQ + V + AKDT +E
Sbjct: 997 EQATDRAHRFGQENKVEVIKLVAKDTIEE 1025
>gi|125550862|gb|EAY96571.1| hypothetical protein OsI_18476 [Oryza sativa Indica Group]
Length = 1157
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 211/467 (45%), Gaps = 61/467 (13%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 287 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 346
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W +E++R+ P RN+ P V V S+ M + + ++ W
Sbjct: 347 NWMKEIQRFCPVLRAIKFLGNPEERNHIRENLLVPGKFDVCVTSFEMAIKEKTALKRFSW 406
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + + + R+ L++GTP + ++++ +N L P
Sbjct: 407 RYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLNFLLP 460
Query: 374 GLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
+ + A+T+ D + G Q ++ Q K +R ++RRLK +
Sbjct: 461 EI-----FSSAETFDDWFQISGENDQHEVVQQLHKVLR----------PFLLRRLKSDVE 505
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
LPPK+ I+++ + + +A + KD + + G RL
Sbjct: 506 KGLPPKKETILKVGMSEMQKQYYRALL---------------QKDLEVVNAGGERKRLLN 550
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMIIFAHH 539
I+ Q + P D + + R ++++IF+
Sbjct: 551 IAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIENAGKMVLLDKLLPKLKERDSRVLIFSQM 610
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDF 598
++LD +++++ KG + RIDGNT DR +++ +F + +E + ++ AGG+G++
Sbjct: 611 TRLLDILEDYLMYKGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINL 670
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 671 ATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 717
>gi|324499809|gb|ADY39928.1| Chromodomain-helicase-DNA-binding protein 3 [Ascaris suum]
Length = 1844
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 220/492 (44%), Gaps = 88/492 (17%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEGV R +G ++ADEMGLGKT+Q++A + + G LV P +
Sbjct: 625 YQLEGVNWLRHCWSQGTDAILADEMGLGKTIQSMAFLYSLVKEGHTRGPFLVAAPLSTLI 684
Query: 257 SWAEELERWLP---------------FCLPADIHLVFGHRNNPVHLTRFP-------RVV 294
+W E E W P + + G +TR V+
Sbjct: 685 NWEREAEFWCPDFYVVTYVGDKDSRTVIREHEFSFIEGAVRGGPKVTRMKTDQGIKFHVL 744
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
+ SY +++ + + +WA L+VDE+H ++ ++ + + D K+ +LL+G
Sbjct: 745 LTSYELINIDKTILSSIEWAGLVVDEAHRLKNNQSLF----FRTLRDF--KIGYRLLLTG 798
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP + ++FH +N L P YD + F + SK ++++L+
Sbjct: 799 TPLQNNLEELFHLLNFLSPDRF----YDLESFTHE-----------FAEISKEDQIQKLH 843
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKAA---- 457
LL M+RRLK +L +P K I+R +L + E ++ K
Sbjct: 844 SLLGPH-MLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNILTRNFEALNPKGGGTQV 902
Query: 458 --VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514
+ +I D +K + PK S E + Y+ + K SG +++ + +
Sbjct: 903 SLLNIIMDLKKCCNHPYLFPKASIE------APKHKNGMYEGTALIKASG--KFILLQKM 954
Query: 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
+ + + + ++++IF+ K+LD +++F +G + RIDG+ + RQ A+
Sbjct: 955 LRK--------LKEQGHRVLIFSQMTKMLDVLEDFCENEGYKYERIDGSITGQARQDAID 1006
Query: 575 SFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F N + + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1007 RFNAPNAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVL 1066
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1067 IYRFVTRNSVEE 1078
>gi|115462129|ref|NP_001054664.1| Os05g0150300 [Oryza sativa Japonica Group]
gi|54291826|gb|AAV32194.1| putative ATPase [Oryza sativa Japonica Group]
gi|113578215|dbj|BAF16578.1| Os05g0150300 [Oryza sativa Japonica Group]
gi|222630218|gb|EEE62350.1| hypothetical protein OsJ_17139 [Oryza sativa Japonica Group]
Length = 1158
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 212/467 (45%), Gaps = 61/467 (13%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 288 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 347
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W +E++R+ P RN+ P V V S+ M + + ++ W
Sbjct: 348 NWMKEIQRFCPVLRAIKFLGNPEERNHIRENLLVPGKFDVCVTSFEMAIKEKTALKRFSW 407
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + + + R+ L++GTP + ++++ +N L P
Sbjct: 408 RYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLNFLLP 461
Query: 374 GLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
+ + A+T+ D + G Q ++ Q K +R ++RRLK +
Sbjct: 462 EI-----FSSAETFDDWFQISGENDQHEVVQQLHKVLR----------PFLLRRLKSDVE 506
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
LPPK+ I++ VG +++ +K KD + + G RL
Sbjct: 507 KGLPPKKETILK--------------VG-MSEMQKQYYRALLQKDLEVVNAGGERKRLLN 551
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMIIFAHH 539
I+ Q + P D + + R ++++IF+
Sbjct: 552 IAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIENAGKMVLLDKLLPKLKERDSRVLIFSQM 611
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDF 598
++LD +++++ KG + RIDGNT DR +++ +F + +E + ++ AGG+G++
Sbjct: 612 TRLLDILEDYLMYKGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINL 671
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 672 ATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 718
>gi|430810508|ref|ZP_19437620.1| Superfamily II DNA/RNA helicase, SNF2 family protein, partial
[Cupriavidus sp. HMR-1]
gi|429497047|gb|EKZ95596.1| Superfamily II DNA/RNA helicase, SNF2 family protein, partial
[Cupriavidus sp. HMR-1]
Length = 511
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 237/507 (46%), Gaps = 69/507 (13%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + P+Q+EG R+ + G CL AD+MGLGKTLQ++A+ + G LV
Sbjct: 31 VPPTLAAELRPYQIEGFRWMMSLAEAGFGACL-ADDMGLGKTLQSLAVLLARAAGGPALV 89
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
V P + +WA E R+ P +H+ G R V +V++SY +L + RK+
Sbjct: 90 VAPTSVCGNWAAEARRFAPAL---RVHVYAEGDREAIVGQAAAHDLVIVSYNLLQQARKA 146
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++ W ++ DE+ S + +A+ + A+ + + LSGTP +R +++
Sbjct: 147 FCDRPWHTVVADEAQ----SFKNPSSRRAQAMFALPAQCR--IALSGTPVENRLAELWAV 200
Query: 368 INMLWPGLLGK-AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+ PGLLG A+++ + + + + ++ R + L ++ V+ RR
Sbjct: 201 MRFCVPGLLGSLARFN-----------EHFANPIERSGARDPR-QRLRRMIAPFVL-RRT 247
Query: 427 KQHLLVQLPPKRRQIIRL-----------LLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
K +L +LPP+ +IR+ L+R + A+ A+ + +K A T
Sbjct: 248 KAQVLDELPPRTELVIRVTPEPTEAAHYEALRRQALSEAERAL-LRPRKDKRAPAAMTEP 306
Query: 476 DSDEHDDSG------ACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
++ H + A C RL + G AK+ F E AA + N
Sbjct: 307 EARIHVLAQLMRMRRAACDPRLVTPDVGQPG-AKVRAFAEL------------AATLAAN 353
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ + L +++ + + G+ + +DG T +R V +FQ + E + +I
Sbjct: 354 --GHKTLVFSQFVDFLQMLRQALVDAGLAWQYLDGATPAGERTRRVAAFQ-AGEGDVFLI 410
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
+ AGG GL+ ++A +V + +P+ QA RAHR GQ V +Y A T +E
Sbjct: 411 SLKAGGFGLNLTAADYIVIADPWWNPAAEDQAMGRAHRIGQQRPVTVYRLIAAGTIEE-R 469
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAV 674
+L++ R ++ +G DA+ A+
Sbjct: 470 IVDLHQGKRALA---DGVLDAMDGEAI 493
>gi|395764394|ref|ZP_10445063.1| SNF2-related protein [Janthinobacterium lividum PAMC 25724]
Length = 1395
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 224/477 (46%), Gaps = 55/477 (11%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFI 241
+D+ +LP +L + +QL G + R G CL AD+MGLGKTLQA+A+
Sbjct: 918 LDDYQAQLPSTLQADLRDYQLAGFEWLARLAHWGVGACL-ADDMGLGKTLQALALILARA 976
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV-FGHRNNPVHLTRFPRVVVISYTM 300
G LVV P + ++W E +R+ P I L G R + + + VVV SY +
Sbjct: 977 PNGPTLVVAPTSVCMNWISEAQRFAPTL---KIKLFGSGDRADMLDTLQPFDVVVASYGL 1033
Query: 301 LHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP-- 356
L + W +++DE+ ++ +KR+ +AV+ + + + SGTP
Sbjct: 1034 LQQEASMFAGVRWHSIVLDEAQAIKNGATKRS------QAVMALQGDFRMVA--SGTPLE 1085
Query: 357 -SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
L +++F IN PGLLG + ++ Q + + G RL +
Sbjct: 1086 NHLGELWNLFRFIN---PGLLGTLDQFNLRFAGPIEKDQDKRA------AAGARLRLRRL 1136
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATND 471
+ ++RR K +L +LP + ++ + L E ++ A+ + E A+
Sbjct: 1137 I--APFILRRTKTQVLSELPSRTEIVLEVELSPQETALYESLRREALEKLAMLEGPASKK 1194
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIA--KLSGFREWLSIHPVIAESDGAADIDVNPR 529
++ ACC ++ ELG+A KL+ F E LS +
Sbjct: 1195 AIQILAEIMKLRRACCN-PQLVAPELGLASSKLAAFAELLS--------------GLLEN 1239
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K+++F+ + L +++ + + G+ + +DG+T ++R+ V +FQ + E + +I +
Sbjct: 1240 RHKVLVFSQFVDHLTLLRQHLEQHGVSYQYLDGSTSMQERKRRVDAFQ-AGEGDVFLISL 1298
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
AGG+G++ ++A V+ ++ +P++ QA DRAHR GQ V IY AK T +E
Sbjct: 1299 KAGGMGINLTAADYVIHMDPWWNPAVEDQASDRAHRMGQLRPVTIYRLVAKHTIEEG 1355
>gi|395326370|gb|EJF58780.1| hypothetical protein DICSQDRAFT_156571 [Dichomitus squalens LYAD-421
SS1]
Length = 1470
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/500 (23%), Positives = 213/500 (42%), Gaps = 102/500 (20%)
Query: 204 FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QL+G+++ + L +ADEMGLGKT+Q I++ I + G LV+ P
Sbjct: 592 YQLKGLQWMVSLYNNKLNGILADEMGLGKTIQTISLITFLIESKKQRGPYLVIVPLSTMT 651
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHL--------TRFPRVVVISYTMLHRLRKSM 308
+W+ E +W P + ++ NP T +VV+ +Y + + R +
Sbjct: 652 NWSSEFAKWAPSVK------MISYKGNPAQRKVLQTDLRTGNFQVVLTTYEYIIKDRIHL 705
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +I+DE H ++ ++ ++ L + ++L+GTP + + +
Sbjct: 706 SRMKWIYMIIDEGHRMKNTQ-----SKLAQTLTQYYHSRYRLILTGTP-------LQNNL 753
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG--VRLEELNVLL--------K 418
LW L + K + VK+ + F + G + L E LL
Sbjct: 754 PELWALL----NFALPKVFNSVKSFDEWFNTPFANSGTGDKIELNEEEALLIIRRLHKVL 809
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+ ++RRLK+ + +LP K ++I++ + +S++ +I D +
Sbjct: 810 RPFLLRRLKKDVESELPDKVEKVIKVRMSALQSQLYKQMKKYKMIADGK----------- 858
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS------ 530
D G + +S + + + K+ HP + ES + VNP S
Sbjct: 859 ----DAKGKPGGVKGLSNELMQLRKICQ-------HPFLFES---VEDRVNPSSMIDDKL 904
Query: 531 ---------------------NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
++++IF KV+D +++F+ G ++R+DG T DR
Sbjct: 905 IRSSGKIELLSRILPKFFATGHRVLIFFQMTKVMDIMEDFLKMMGWKYLRLDGGTKTEDR 964
Query: 570 QSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
V F N E K+ I+ AGG+GL+ +A V+ + +P LQA+DRAHR GQ
Sbjct: 965 AGHVQLFNAPNSEYKVFILSTRAGGLGLNLQTADTVIIFDSDWNPHADLQAQDRAHRIGQ 1024
Query: 629 TSAVNIYIFCAKDTTDESHW 648
T V I F + + +ES +
Sbjct: 1025 TKVVRILRFITEKSVEESMF 1044
>gi|359414617|ref|ZP_09207082.1| SNF2-related protein [Clostridium sp. DL-VIII]
gi|357173501|gb|EHJ01676.1| SNF2-related protein [Clostridium sp. DL-VIII]
Length = 980
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/474 (26%), Positives = 220/474 (46%), Gaps = 78/474 (16%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI- 246
LP + + + +Q++G ++ L GG ++ADEMGLGKT+Q IA G I
Sbjct: 522 LPDTFVGELREYQMKGFKWFKTLSELGLGG--ILADEMGLGKTIQTIAFLLS--EKGKIT 577
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+VCP L +W +EL ++ P +H R ++ V++ +Y L RL
Sbjct: 578 LIVCPTSLIYNWKDELHKFAPSLKVVIVH--GAQRIETLNNIHDYDVILTTYGTL-RLDI 634
Query: 307 SMIEQD-WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ E + I+DE +++ + + K + ++ AK + L+GTP + +++
Sbjct: 635 NYYEDIIFDYCIIDEGQNIK----NASAQNTKVIKEIKAKTR--FALTGTPIENNLIELW 688
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD--FSKGV-RLEELNVLLKQTVM 422
+ + PG L Y ++FQ+ S+G LE L +L+K ++
Sbjct: 689 SIFDFVMPGYL-------------------YSKEVFQEKFISRGEDNLESLKLLIKPFIL 729
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
RR K+ ++ +LP K + I + E+ ++ A+ N ++ K KD
Sbjct: 730 -RRTKKEVMRELPDKVEKKILI-----EMTPSQKAL-YSNYIKRIKVKIKNNKD------ 776
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GAADIDVNPR--------SN 531
GKI ++ L+ R+ + + P + D G+ ++ + N
Sbjct: 777 -------GKIEI----LSYLTKLRQ-ICLDPSLILEDYNGGSGKLEAAVKLIKEHIDTGN 824
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++F+ LD + E ++ + I F + G T P+DR V+ F S+ VK+ +I + A
Sbjct: 825 KVLLFSQFTSALDKIGERLNNEEINFFHLQGKTRPKDRIKLVNQFNRSDAVKVFLISLKA 884
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ +SA V+ + +P++ QA DRAHR GQ V + AK T +E
Sbjct: 885 GGTGLNLTSANLVIHFDPWWNPAVEDQATDRAHRIGQEKEVKVIRLIAKGTIEE 938
>gi|225681829|gb|EEH20113.1| DNA repair and recombination protein RAD26 [Paracoccidioides
brasiliensis Pb03]
Length = 1000
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 161/643 (25%), Positives = 261/643 (40%), Gaps = 114/643 (17%)
Query: 177 RPE------HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLR--RGGRCLIA 222
RPE + D V+D ++GK + Q EGVRF G+R G ++A
Sbjct: 308 RPESVPKGKEIVDVVLDPLLGKHLRE-------HQREGVRFLYECVMGMRSFNGEGAILA 360
Query: 223 DEMGLGKTLQAIAIAACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPA 272
DEMGLGKTLQ IA+ + I L+VCP L +W +E +W L
Sbjct: 361 DEMGLGKTLQTIALIWTLLKQNPIYEAPPVIKKALIVCPVTLIDNWKKEFRKW----LGN 416
Query: 273 DIHLVFGHRNNPVHLTRFP-----RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRC 326
+ VF LT F V++I Y L +++ + + ++I DE H +
Sbjct: 417 ERIGVFVADAKRTRLTDFTMGQSYSVMIIGYERLRTVQEELSKGSGIDIVIADEGHRM-- 474
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
RT + + +A+ + + V+LSGTP + + F ++ + PG+LG K F K
Sbjct: 475 --RTVQNKSAQAIQTL--NTSKRVILSGTPIQNDLTEFFAMVDFVNPGILGTFKM-FMKQ 529
Query: 387 YCDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKR------- 438
+ G L +D KG R EEL L ++RR L LPPK
Sbjct: 530 FEGPIVKSQQPGALKRDIEKGKARSEEL-ASLTSLFILRRTADLLSNYLPPKTEYVLFCN 588
Query: 439 ---------RQIIRLLLKRSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACC 487
R ++ + + + ++ +A+ +I +K ++ + PK SDE S
Sbjct: 589 PTSSQANIYRHVLSSPVFQCALGNSDSALQLITILKKLCNSPSLLNPKSSDEDSTSTLSS 648
Query: 488 RLGKIS---YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
+ + + L A R + I + S K+++ +++ LD
Sbjct: 649 LVASLPSSITRRLTPASSGKIRVLDQLLHNIRHTT----------SEKVVLISNYTSTLD 698
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI--AIIGITAGGVGLDFSSAQ 602
+ + ++ + F+R+DG+T RQ+ V F S+ + ++ AGG GL+ A
Sbjct: 699 LLGKLLTSLSLPFLRLDGSTPAAKRQALVDDFNRSSPTSVFAFLLSAKAGGTGLNLIGAS 758
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
+V ++ +P+ +QA R HR GQ IY F K +E WQ + S
Sbjct: 759 RLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRFLLKGALEEKIWQRQVTKIGLADSVM 818
Query: 663 NGKYDALQEIAVEGVSYLEMSD--KTDRGSEDLTLDQVA---SSDQFQELMKVPESSEAS 717
+ K LQ S E+ D + D G+ T D + QE P S
Sbjct: 819 DQKSGVLQ------FSREELRDLFRLDEGATCQTHDLLGCECGGRGGQETSSHPNGSHII 872
Query: 718 DFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVSQYT 760
D SK+DHS +E+ D + + +T
Sbjct: 873 DI--------------------SKSDHSESESTDSDDATTDFT 895
>gi|445493787|ref|ZP_21460831.1| SNF2-like protein [Janthinobacterium sp. HH01]
gi|444789948|gb|ELX11495.1| SNF2-like protein [Janthinobacterium sp. HH01]
Length = 1387
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 229/503 (45%), Gaps = 56/503 (11%)
Query: 161 VEKLSHSIDTGRWNPCRPEHLSD-EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG--- 216
+E+L+ I + + EHL+ E + +LP +L + +QLEG + R
Sbjct: 884 LEELADDIGGLKSDKLWKEHLARMEAQAAFVPQLPTTLQAELRDYQLEGFNWLSRLASWG 943
Query: 217 -GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
G CL AD+MGLGKTLQA+A+ G LVV P + ++W E R+ P ++
Sbjct: 944 VGACL-ADDMGLGKTLQALALILSRAPQGPTLVVAPTSVCMNWISEAARFAPTL---NVK 999
Query: 276 LV-FGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSE 332
L G R + + +VV SY +L W +++DE+ ++ +KR+
Sbjct: 1000 LFGAGDRAETLSTLQPYDLVVTSYGLLQLESALFAGVQWNTIVLDEAQAIKNGATKRS-- 1057
Query: 333 PEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+AV+ + + I +GTP L +++F IN PGLLG + +
Sbjct: 1058 ----QAVMALKGDFRMIA--TGTPLENHLGELWNLFRFIN---PGLLGSIEQFNLRFAAP 1108
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
++ Q ++ ++ G R L L+ Q M+RR K +L +LP + + + L
Sbjct: 1109 IEKPQDHRAEV------GAR-NRLRRLI-QPFMLRRTKAQVLTELPSRTEITLEVDLSAE 1160
Query: 450 EIVSA----KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI--AKLS 503
E + A+ + E A ++ ACC ++ ELG+ +KL+
Sbjct: 1161 ETALYESLRRTALENLAAVEGPAEKKSIQILAEIMRLRRACCNPNLVA-AELGLKSSKLA 1219
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
F L + +K+++F+ + L ++E + I + +DG+
Sbjct: 1220 AFAHLLE--------------GLLENRHKVLVFSQFVDHLSLIREHLDANNISYQYLDGS 1265
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +R+ V FQ + E + +I + AGGVG++ ++A V+ ++ +P++ QA DRA
Sbjct: 1266 TPMAERKKRVDLFQ-AGEGDVFLISLKAGGVGINLTAADYVIHMDPWWNPAVEDQASDRA 1324
Query: 624 HRRGQTSAVNIYIFCAKDTTDES 646
HR GQ V IY A+ T +E
Sbjct: 1325 HRMGQLRPVTIYRLVARHTIEEG 1347
>gi|218188229|gb|EEC70656.1| hypothetical protein OsI_01941 [Oryza sativa Indica Group]
Length = 1259
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 136/566 (24%), Positives = 246/566 (43%), Gaps = 89/566 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 234 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 293
Query: 257 SWAEELERWLPFCLPADIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W +E++R+ P RN N + +F V V S+ M + + ++
Sbjct: 294 NWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFD-VCVTSFEMAIKEKTTLKRFS 352
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N L
Sbjct: 353 WRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLNFLL 406
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P + + A+T+ + + G Q ++ Q K +R ++RRLK +
Sbjct: 407 PEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLKSDV 451
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
LPPK+ I+++ + + + +A + KD + + G RL
Sbjct: 452 EKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVINAGGERKRLL 496
Query: 491 KISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
I+ Q E G +G E L + + R ++++IF
Sbjct: 497 NIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLVENAGKMVLLDKLLPKLKDRDSRVLIF 554
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVG 595
+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+G
Sbjct: 555 SQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLG 614
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E + K L
Sbjct: 615 INLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 674
Query: 656 ----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDLTLD 696
R T K D LQ + D T DR E+ T +
Sbjct: 675 ALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAE 734
Query: 697 QVASSDQFQE---LMKVPESSEASDF 719
A +F E K+ +++E DF
Sbjct: 735 LDAKMKKFTEDAIKFKMDDTAELYDF 760
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAI 586
PR ++ H L LD +++++ +G + RIDGNT DR +++ +F + +E + +
Sbjct: 809 PREPRIPRMPHLL--LDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFL 866
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ ++A VV + +P LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 867 LSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEK 926
Query: 647 HWQNLNKSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR-- 688
+ K L R T K D LQ + D T DR
Sbjct: 927 VIERAYKKLALDALVIQQGRLAEQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRII 986
Query: 689 -GSEDLTLDQVASSDQFQE---LMKVPESSEASDF 719
E+ T + A +F E K+ +++E DF
Sbjct: 987 AKGEETTAELDAKMKKFTEDAIKFKMDDTAELYDF 1021
>gi|284041008|ref|YP_003390938.1| SNF2-like protein [Spirosoma linguale DSM 74]
gi|283820301|gb|ADB42139.1| SNF2-related protein [Spirosoma linguale DSM 74]
Length = 1003
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/488 (26%), Positives = 220/488 (45%), Gaps = 93/488 (19%)
Query: 193 LPKSLLDVILPFQLEGVRFG--LR--RGGRCLIADEMGLGKTLQAIAIAACFISAGSI-- 246
LP + + P+Q G + LR R G CL AD+MGLGKT+ +A+ AG
Sbjct: 537 LPSRFIGNLRPYQQAGYDWMNFLRQYRFGGCL-ADDMGLGKTVMTLAMLQGQKEAGVTEP 595
Query: 247 -LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+V P L +W E ++ P L ++ N + +++ SY ++
Sbjct: 596 SLLVMPTSLLYNWELEARKFTP-DLRVMVYTGTYREKNTAQFDDYD-LILTSYGIVRIDI 653
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + + +I+DES ++ KAV+ + + ++L+GTP + D++
Sbjct: 654 DLLSDYRFNYVILDESQAIK----NPSSHITKAVMQLNTAFR--LILTGTPIENSTMDLW 707
Query: 366 HQINMLWPGLLGKAKY-------DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
Q++ + PGLLG + K + + KT + Y L
Sbjct: 708 SQMSFINPGLLGSQSFFRNEFQIPIEKRHDEAKTSKLYG-------------------LI 748
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
+ M+RR K + LPPK ++ D TP +
Sbjct: 749 KPFMLRRNKAQVATDLPPKVESVLYC--------------------------DMTPDQAT 782
Query: 479 EHDDSGACCR---LGKISYQELGIAK-----LSGFREWLSI--HP--VIAESDG-AADID 525
+++++ + R L +I +E GIAK L G + I HP V AE +G + +D
Sbjct: 783 QYEEAKSYYRNLILERI--EEEGIAKSQMVVLQGLTKLRQIANHPRMVDAEYEGDSGKLD 840
Query: 526 --------VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
++K+++F+ +K L V++++ EK I + +DG+T+ DRQS V FQ
Sbjct: 841 DMLMRLESAMTENHKVLVFSQFIKHLTVVRQYLKEKNIKYAYLDGSTV--DRQSQVELFQ 898
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+ VK+ +I + AGG+G + ++A V L+ +P++ QA DRAHR GQ V Y F
Sbjct: 899 TDDSVKLFLISLKAGGLGHNLTAADYVFILDPWWNPAIEAQAVDRAHRIGQQKTVFTYKF 958
Query: 638 CAKDTTDE 645
AK+T +E
Sbjct: 959 IAKNTVEE 966
>gi|401828407|ref|XP_003887917.1| superfamily II DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392998925|gb|AFM98936.1| superfamily II DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 687
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/517 (24%), Positives = 222/517 (42%), Gaps = 91/517 (17%)
Query: 179 EHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLR-----RGGRCLIADEMGLGKTLQA 233
EHL E +P L D + +Q +GV + L+ +GG ++AD+MGLGKT+Q
Sbjct: 121 EHLKKESKIRQGFSVPGFLWDTLFEYQKDGVEWMLKLYKEEKGG--VLADDMGLGKTVQM 178
Query: 234 IAIAACFISAGSI---LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
I + +G I L++CPA + W E +R+ PF ++ F R+
Sbjct: 179 IVFLSVLFQSGYISRVLILCPATIVSQWILEWKRFYPF---VRVYFGFSERSGE------ 229
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
V ++SY K ++ W +LI+DE H ++ + +V V A+ K
Sbjct: 230 -GVYLMSYERFKAREKGLV---WDILILDEGHKIK----NRNAQITLSVKKVRARSK--F 279
Query: 351 LLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
+LSGTP +L + IF +N PGLLG + F + + +V GY+ +
Sbjct: 280 VLSGTPIQNNLGELWSIFDFVN---PGLLG-SHTSFHEEFEEVIRRGGYRSASNLQVERA 335
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKR----------------------RQIIRLL 445
+ + L + ++RR K + +LP K + ++++L
Sbjct: 336 YKHSLMLRSLIEPYILRRTKSQISHKLPSKEDKIVFCTLTPVQVELYNRVLESKHVMKVL 395
Query: 446 LKRSEIVSAKAAVGVINDSEK-------DATNDKTPKDSDEHDDSGACC------RLGKI 492
++ ++S + + + + + D D + + +E +D A R G +
Sbjct: 396 TGKANLLSGISMLRKVCNHPRLFFPGKVDGPEDCSSETCNEKNDGKAEISLEGEERYGLV 455
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
S + ++W +K+++F+ +++LD ++ I
Sbjct: 456 SSSCKIKILMDLLKKW------------------KEEGSKVLVFSQTIRMLDIIEMCI-- 495
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
+ ++R+DG T R S V F +V I ++ GG+GL+ A +V + +
Sbjct: 496 RKYTYLRMDGRTATSVRSSLVDRFNRDEDVFIFLLTTKVGGLGLNLIGASRIVIYDPDWN 555
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
PS QA++RA R GQ V IY F KDT +E +Q
Sbjct: 556 PSTDTQAKERAWRYGQRKDVEIYRFVCKDTIEEKVYQ 592
>gi|71400983|ref|XP_803224.1| transcription activator [Trypanosoma cruzi strain CL Brener]
gi|70865998|gb|EAN81778.1| transcription activator, putative [Trypanosoma cruzi]
Length = 1038
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/508 (25%), Positives = 221/508 (43%), Gaps = 95/508 (18%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAA----CFISAGSI 246
P + + P+Q+EGV + L ++ADEMGLGKTLQ IA A + G
Sbjct: 161 PSYIRGKLRPYQIEGVNWLLGLFSCNINGILADEMGLGKTLQTIATLAYLKFTYGLPGPH 220
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIH--------LVFGHRNNPVHLTRFPRVVVISY 298
LVVCP + +W EL++W P H L+ H P ++ ++V ++
Sbjct: 221 LVVCPKSVMGNWYRELKQWCPALNAFKFHGNSEIRPQLIKSHLQ-PHDKLKYD-IIVTTF 278
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
M+ + W L+VDE+H ++ +E V LD R+++ +GTP
Sbjct: 279 EMVIEELPTFKRIHWQYLVVDEAHKLK-----NEEGRVHTALDSLNTNHRLII-TGTPLQ 332
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ +++ ++ L P L A + + + D + Q QD + + ++ L
Sbjct: 333 NNLKELWALLHFLAPRLFENA--ESFEAWFDTASGQ-------QDSNAMSNMHKILAPL- 382
Query: 419 QTVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAAVG------ 459
MIRR+K + +PPK R+ + +L K +E ++ KA+ G
Sbjct: 383 ---MIRRIKSEVSTGIPPKKEIYVACKLTKTQRKWYMHVLAKDAEALN-KASGGSMSSLT 438
Query: 460 --------VINDSEK-DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREW 508
VIN D + P +DE SG L K+ Y +L +E
Sbjct: 439 NIMMNLRKVINHPYMMDGGEEGPPFITDERIVKHSGKMMILDKLLY------RLRREKE- 491
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+K++IF+ +LD ++++ +G RIDGNT D
Sbjct: 492 --------------------EKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYD 531
Query: 569 RQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
R + + +F N + I ++ AGG+G++ +A +VV + +P + LQA+DRAHR G
Sbjct: 532 RDAQMAAFNSPNSDYFIFLLSTRAGGLGINLQAANHVVIYDSDWNPQMDLQAQDRAHRIG 591
Query: 628 QTSAVNIYIFCAKDTTDESHWQNLNKSL 655
Q V +Y F + T +E ++ K L
Sbjct: 592 QKRVVRVYRFITEGTVEEKIYRRALKKL 619
>gi|71649857|ref|XP_813640.1| transcription activator [Trypanosoma cruzi strain CL Brener]
gi|70878541|gb|EAN91789.1| transcription activator, putative [Trypanosoma cruzi]
Length = 1092
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 221/493 (44%), Gaps = 65/493 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAA----CFISAGSI 246
P + + P+Q+EGV + L ++ADEMGLGKTLQ IA A + G
Sbjct: 140 PSYIRGKLRPYQIEGVNWLLGLFSCNINGILADEMGLGKTLQTIATLAYLKFTYGLPGPH 199
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIH--------LVFGHRNNPVHLTRFPRVVVISY 298
LVVCP + +W EL++W P H L+ H P ++ ++V ++
Sbjct: 200 LVVCPKSVMGNWYRELKQWCPALNAFKFHGNSEIRPQLIKSHLQ-PHDKLKYD-IIVTTF 257
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
M+ + W L+VDE+H ++ +E V LD R+++ +GTP
Sbjct: 258 EMVIEELPTFKRIHWQYLVVDEAHKLK-----NEEGRVHTALDSLNTNHRLII-TGTPLQ 311
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ +++ ++ L P L A + + + D + Q QD + + ++ L
Sbjct: 312 NNLKELWALLHFLAPRLFENA--ESFEAWFDTASGQ-------QDSNAMSNMHKILAPL- 361
Query: 419 QTVMIRRLKQHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAAVGVINDSE 465
MIRR+K + +PPK R+ + +L K +E ++ KA+ G ++
Sbjct: 362 ---MIRRIKSEVSTGIPPKKEIYVACKLTKTQRKWYMHVLAKDAEALN-KASGGSMSSLT 417
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS--IHPVIAESDGAAD 523
N + + D G G + I K SG L ++ + E +
Sbjct: 418 NIMMNLRKVINHPYMMDGGEE---GPPFITDERIVKHSGKMMILDKLLYRLRREKE---- 470
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EV 582
+K++IF+ +LD ++++ +G RIDGNT DR + + +F N +
Sbjct: 471 -----EKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDRDAQMAAFNSPNSDY 525
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
I ++ AGG+G++ +A +VV + +P + LQA+DRAHR GQ V +Y F + T
Sbjct: 526 FIFLLSTRAGGLGINLQAANHVVIYDSDWNPQMDLQAQDRAHRIGQKRVVRVYRFITEGT 585
Query: 643 TDESHWQNLNKSL 655
+E ++ K L
Sbjct: 586 VEEKIYRRALKKL 598
>gi|94272618|ref|ZP_01292159.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
gi|93450064|gb|EAT01427.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
Length = 596
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 229/476 (48%), Gaps = 70/476 (14%)
Query: 193 LPKSLLDVILPFQLEG----VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +Q+EG R G CL AD+MGLGKT+QA+A+ +AG LV
Sbjct: 127 VPSTLQAELRDYQVEGFAWLARLAKLGAGACL-ADDMGLGKTVQALALLLHRAAAGPALV 185
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLHR--LR 305
+ P + +W EE R+ P + + +R P ++V+SY +L
Sbjct: 186 IAPTSVCPNWQEEAARFAPSL---RVQSLGQNRRRETLAELGPLDLLVVSYGLLQTETAA 242
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
K + E +W +I+DE+ ++ + +A + + A + + +GTP + +++
Sbjct: 243 KLLAEVEWGTVILDEAQAIK----NFQTRRSQAAMRLQAGFRCVT--TGTPVENHLGELW 296
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ N + PGLLG ++ DF + + + Q QD + RL++L + ++RR
Sbjct: 297 NIFNFINPGLLG-SQQDFKRRFI-LPIEQD------QDAAARRRLKKLVL----PFILRR 344
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS-----DEH 480
K +L +LPP R+EIV + + +DA +T + E
Sbjct: 345 NKAQVLEELPP-----------RTEIVL------TVEPTPEDAALHETIRRRAVEVLQED 387
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGA---------ADI--DVNPR 529
+ A R K+ +A+L R + HP + +GA A++ D+
Sbjct: 388 EGEAAGSRHLKV------LAELMRLRR-AACHPRLVLGEGALMAGKLPLFAEVLHDIISN 440
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K ++F+ + L V+E++ +GIG+ +DG+T R+R+ AV +FQ + E ++ I +
Sbjct: 441 RHKALVFSQFVAHLAIVREYLDGQGIGYQYLDGSTPARERKRAVAAFQ-AGEGEVFCISL 499
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ L+ +P++ QA DRAHR GQ V IY K + +E
Sbjct: 500 KAGGTGLNLTAADYVIHLDPWWNPAVEDQASDRAHRIGQERPVTIYRLVTKGSIEE 555
>gi|451946092|ref|YP_007466687.1| DNA/RNA helicase, superfamily II, SNF2 family [Desulfocapsa
sulfexigens DSM 10523]
gi|451905440|gb|AGF77034.1| DNA/RNA helicase, superfamily II, SNF2 family [Desulfocapsa
sulfexigens DSM 10523]
Length = 1390
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 229/472 (48%), Gaps = 64/472 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP +L + +Q EG + R G CL AD+MGLGKT+QA+ + G L
Sbjct: 927 QLPSTLRAELRDYQHEGYNWLSRLAHWGVGGCL-ADDMGLGKTVQALTAMLSLATEGPSL 985
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPV-HLTRFPRVVVISYTMLHRLR 305
VV P + +W E R+ P +I + G +R + L +F +++ +YT+L +
Sbjct: 986 VVAPTSVSNNWQSEANRFTPTL---NIKTLTGKNREETIAELGKFD-ILITTYTLLQQEN 1041
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ W +I+DE+ ++ +KR+ KA + + A+ K I +GTP L
Sbjct: 1042 DLLSAVKWQTVILDEAQAIKNAATKRS------KAAMALQARFKLIT--TGTPVENHLGE 1093
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++FH IN PGLLG F + + ++ Y ++ RL+ L L++
Sbjct: 1094 LWNLFHFIN---PGLLGSLN-RFNERFA--IPIERYH-------NRDARLK-LKKLIRPF 1139
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVI-NDSEKDATNDKTPK 475
++ RR+K +L +LPP+ + + + E +A A+ V+ N+ EK + + +
Sbjct: 1140 IL-RRIKSQVLEELPPRTEITLDVEMSEDEQHFYEALRQNALEVLENNREKKSRHLQIL- 1197
Query: 476 DSDEHDDSGACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADID-VNPRSNKM 533
++ ACC I+ +G AKL F A+ +D + +K
Sbjct: 1198 -TEIMKLRQACCNPRLIAADTSIGSAKLEVF---------------ASVVDELLSGGHKA 1241
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
+IF+ + L ++E + KGI + +DG+T R+ V FQ + E + +I + AGG
Sbjct: 1242 LIFSQFIGHLTILREHLDAKGINYRYLDGSTSSPKRKQEVERFQ-AGEGDLFLISLKAGG 1300
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY K+T +E
Sbjct: 1301 LGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQKRPVTIYRLVCKNTIEE 1352
>gi|398868254|ref|ZP_10623655.1| DNA/RNA helicase, superfamily II, SNF2 family [Pseudomonas sp. GM78]
gi|398233518|gb|EJN19444.1| DNA/RNA helicase, superfamily II, SNF2 family [Pseudomonas sp. GM78]
Length = 1101
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/487 (26%), Positives = 223/487 (45%), Gaps = 88/487 (18%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI-- 246
P+ L + P+QLEG+ + L GG ++ D+MGLGKTLQ +A AG +
Sbjct: 624 PRGLNATLRPYQLEGLNWMQTLRELEVGG--ILGDDMGLGKTLQTLAHLLLEKQAGRLDL 681
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L V P L +W +E R+ P +H H++ V L + +V+ +Y +L R
Sbjct: 682 PALAVMPTSLIPNWLDEAARFTPQLKVLALHGATRHKDF-VSLVEYD-LVLTTYALLPRD 739
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + Q W++LI+DE+ +++ + +A D+ A+ + + LSGTP + ++
Sbjct: 740 LEVLQLQVWSVLILDEAQNIK----NPVSKAAQAARDLQARQR--LCLSGTPLENHLGEL 793
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ + L PG LG +K F + Y G R++ L +K ++R
Sbjct: 794 WSLFHFLLPGWLGDSK-TFNRDYRTPIEKHG----------DSQRMQHLTARIK-PFLLR 841
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD-------ATNDKTPKDS 477
R K+ + +LPPK SEIV ++D ++D A N K
Sbjct: 842 RKKEQVATELPPK-----------SEIVHWVE----LSDGQRDVYETVRVAMNKKV---R 883
Query: 478 DEHDDSGA-----------------CCRLGKISYQELGIAKLSGFREWLSIHPVIAE--S 518
DE SG CC L I A +G + +S+ ++ E S
Sbjct: 884 DEIARSGVARSQIIILDALLKLRQVCCDLRLIKMPLTAKALRAGSGKLISLMEMLEELLS 943
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
+G K+++F+ +L ++E + ++GIG+ + G T DR++ V FQ
Sbjct: 944 EG----------RKILMFSQFTSMLALIEEELQQRGIGYSLLTGET--TDRRTPVKEFQ- 990
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+V + +I + AGG GL+ ++A V+ + +P++ QA DRA+R GQ V +Y
Sbjct: 991 DGKVPLFLISLKAGGTGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQDKPVFVYKLI 1050
Query: 639 AKDTTDE 645
A+ T +E
Sbjct: 1051 ARGTVEE 1057
>gi|193596661|ref|XP_001945595.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like
[Acyrthosiphon pisum]
Length = 1048
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 211/483 (43%), Gaps = 91/483 (18%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + G ++ADEMGLGKTLQ I++ +I +V+ P
Sbjct: 163 YQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVIVPKSTLQ 222
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FP---RVVVISYTMLHRLRKSMIE 310
+W E ++W P + G R+ V R P V + SY M+ R R + +
Sbjct: 223 NWVNEFKKWCPTIRTV---CMIGDRDTRVKFIRETFIPGDWDVCITSYEMIIRERAVLRK 279
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
W L++DE+H ++ K S+ E+ + + +LL+GTP + ++++ +N
Sbjct: 280 IQWRYLVIDEAHRIKNEK--SKLSEIIREFETTNR----LLLTGTPLQNNLHELWALLNF 333
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L P + + DF + + F +E L+ +L+ ++RRLK +
Sbjct: 334 LLPDVFNSSD-DFDQWFNTNNC-----------FGDNALIERLHAVLR-PFLLRRLKSEV 380
Query: 431 LVQLPPK-------------RRQIIRLLLKRSEIVSAKAAV------GVINDSEK----- 466
+L PK R ++L+K ++V+ V ++ K
Sbjct: 381 EKRLKPKKEVKVYVGLSKLQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHP 440
Query: 467 ---DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
D P +DEH I + K+ F + L + E D
Sbjct: 441 YLFDGAEPGPPYTTDEH-----------IVF---NCGKMVVFDKLLK---ALKEQD---- 479
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+++++F+ +++D +++++ KG + R+DG T DRQ ++ + N K
Sbjct: 480 -------SRVLVFSQMTRMMDILEDYMHWKGYNYCRLDGQTPHEDRQRQINEYNEPNSKK 532
Query: 584 -IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ I+ AGG+G++ ++A V+ + +P + LQA DRAHR GQ V ++ ++T
Sbjct: 533 FVFILSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITENT 592
Query: 643 TDE 645
+E
Sbjct: 593 VEE 595
>gi|444912922|ref|ZP_21233079.1| hypothetical protein D187_05016 [Cystobacter fuscus DSM 2262]
gi|444716335|gb|ELW57186.1| hypothetical protein D187_05016 [Cystobacter fuscus DSM 2262]
Length = 1015
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 216/468 (46%), Gaps = 67/468 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+LP+ L + P+QL+G+ + LR+ G ++AD+MGLGKTLQ I C + GS LV
Sbjct: 565 RLPEDLTATLRPYQLQGLSWLTFLRQAGLGGVLADDMGLGKTLQTI----CTLGPGS-LV 619
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P + +W E++R+ P + + H V L V + +Y +L + +
Sbjct: 620 VAPTSVLPNWEAEVKRFRP-----SLKVSVYHGPGRV-LDETADVTLTTYALLRLDAEVL 673
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
++W +++DE+ ++ + + +A + A + V LSGTP +R +++ +
Sbjct: 674 GAKEWDTVVLDEAQAIK----NPDSQVARAAYGLQAAFR--VALSGTPIENRLEELWSLM 727
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ GLLG K +F + + + D KG E L ++ V+ RRLK+
Sbjct: 728 HFTNQGLLGGRK-EFEERWS----------RPVSDNQKGA-AERLRARIRPFVL-RRLKR 774
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD------ 482
+ +LPP+ + + L E + D+ AT ++ +E
Sbjct: 775 DVAPELPPRTESVRHVTLSERE--------RAVYDAVYAATREEVVSQLEEGGSVLKALE 826
Query: 483 -----SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
A C + Q+ AK S E + E+ G A D +K ++F+
Sbjct: 827 ALLRLRQAACHPALVPGQQ---AKTSSKVE------ALIEALGTAVAD----GHKALVFS 873
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
+LD ++ + E GIGF+R+DG+T +R FQ + +I + AG GL+
Sbjct: 874 QWTSMLDLIEPALREAGIGFIRLDGSTA--NRGGVAERFQDPEGPPVMLISLKAGATGLN 931
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A +V ++ +PS+ QA DRAHR GQ V +Y ++ T +E
Sbjct: 932 LTAADHVFLVDPWWNPSVEAQAADRAHRIGQQRPVMVYRLVSRGTVEE 979
>gi|380797685|gb|AFE70718.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1, partial [Macaca
mulatta]
Length = 327
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 164/333 (49%), Gaps = 45/333 (13%)
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 14 VMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQQQKD- 69
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 70 ----ALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHHK 108
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FSS
Sbjct: 109 VVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSS 168
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 169 ADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV--- 225
Query: 661 ATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQEL-------MKVPES 713
L E + ++ EM++ TD +D Q+ D FQ+ M++ E+
Sbjct: 226 --------LAEAGLSETNFSEMTESTDYLYKDPKQQQI--YDLFQKSFEKEGSDMELLEA 275
Query: 714 SEASDFRAINTNDEITAKMNDKLLEESKTDHSP 746
+E+ D + + +++ L+ES SP
Sbjct: 276 AESFDPGSASGTSGSSSQNTGDTLDESSLTASP 308
>gi|345883552|ref|ZP_08834993.1| hypothetical protein HMPREF0666_01169 [Prevotella sp. C561]
gi|345043657|gb|EGW47712.1| hypothetical protein HMPREF0666_01169 [Prevotella sp. C561]
Length = 1324
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 219/461 (47%), Gaps = 46/461 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + R G CL AD+MGLGKT+Q I + + G+ L+
Sbjct: 863 VPKTLQAQLRDYQEEGFEWMSRLTAWGAGVCL-ADDMGLGKTVQTITLLLEQSANGASLI 921
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL+R+ P L + R+ + + V++I+Y +L+ +K +
Sbjct: 922 VAPASVVPNWRNELKRFAP-TLNLTVLNQSEDRSKDIKEAKAGDVIIITYALLNIQQKDL 980
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
++W ++ +DE+H ++ + + KA + + A+ R V+L+GTP L+ +++F
Sbjct: 981 TAREWNIVCLDEAHTIK----NANTKMSKAAMQLQAQ--RKVILTGTPIQNHLAELWNLF 1034
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F + + + ++G + R +L L+ ++RR
Sbjct: 1035 QFIN---PGLLGSAE-QFKQKF--ILPIEGENDK--------NRQNQLRRLI-SPFLLRR 1079
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K ++ +LP K + + L E+ + + + D DK ++
Sbjct: 1080 TKAEVIDELPAKNEIKLPVELSSEEMAMYEIRRRHVEEKVLDKKADKMIVLAEITRLRQM 1139
Query: 486 CCRLGKISYQELGIAKLSGFREW-LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
C + ++W L V+A D A + N N+ ++F+ +
Sbjct: 1140 ACSCSLVD------------KKWKLPSSKVLAFIDLAESL--NDSGNRALVFSQFTSFFE 1185
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+++ + + ++ +DG+T R+ V FQ S + +I + AGG+GL+ + A V
Sbjct: 1186 EIKKAMDNAKLPYLYLDGSTPMAMREKLVKEFQ-SGKCPFFLISLKAGGLGLNLTGANYV 1244
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1245 IHLDPWWNPAIEQQATDRAYRIGQQQDVTVYHLISQHTIEE 1285
>gi|336384082|gb|EGO25230.1| hypothetical protein SERLADRAFT_361029 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1260
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/525 (23%), Positives = 228/525 (43%), Gaps = 79/525 (15%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
FQL G+ + +G ++ADEMGLGKT+Q +A + G LV+ P
Sbjct: 211 FQLTGLNWLAYLWSKGENGILADEMGLGKTVQTVAFISYLFHEMHQYGPFLVIVPLSTIT 270
Query: 257 SWAEELERWLPFCLPADIHLV----------------FGHRNNPVHLTRFPRVVVISYTM 300
+W + W P DI+++ FG N + + V++ +Y +
Sbjct: 271 AWQTQFAAWAP-----DINVITYIGTAAAREVIRTYEFGPSNKRLKMN----VLLTTYEL 321
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R K + + W L VDE+H ++ SE + +A+ +A K +L++GTP +
Sbjct: 322 TLRDAKDLADIKWHALAVDEAHRLK----NSESQLYEALRSFSAASK--LLITGTPLQNN 375
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
++ ++ L P K+ + + D +++EL+ L ++
Sbjct: 376 VKELLSLMHFLMP-----EKFALSNEFD------------LNDADHEAKIKELHEQL-ES 417
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRL------------LLKRSEIVSAKAAVGVINDSEKDA 468
+M+RRLK+ +L LP K +I+R+ +L ++ K+A G N S +
Sbjct: 418 LMLRRLKRDVLTSLPTKSERILRVEMSALQTHFYKNILTKNFQGLIKSANGNNNISLLNI 477
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ + + GA R G+ SG L V DG
Sbjct: 478 AMELKKAANHPYLFDGAEVRTDNSEETLKGLVMNSGKMVLLDKLMVRLRQDG-------- 529
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-II 587
++++IF+ +++LD + +++S +G R+DG R+ ++ F A ++
Sbjct: 530 --HRVLIFSQMVRMLDILSDYMSLRGYQHQRLDGMVASEARKKSIAHFNAPGSPDFAFLL 587
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
AGG+G++ +A V+ + +P LQA RAHR GQ S V++Y F +KDT +E
Sbjct: 588 STRAGGLGINLETADTVIIFDSDWNPQNDLQAMARAHRIGQKSHVSVYRFVSKDTMEEDV 647
Query: 648 WQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
+ K + + N + ++ +G+ ++ + K D S+D
Sbjct: 648 LERAKKKMVLEYAIINQMDTSQAHLSGKGIEKVKEASKPDNLSKD 692
>gi|332667462|ref|YP_004450250.1| SNF2-like protein [Haliscomenobacter hydrossis DSM 1100]
gi|332336276|gb|AEE53377.1| SNF2-related protein [Haliscomenobacter hydrossis DSM 1100]
Length = 984
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 139/507 (27%), Positives = 230/507 (45%), Gaps = 85/507 (16%)
Query: 184 EVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAI-- 236
E V ++ +P S L L P+QL+GVR+ ++ G CL AD+MGLGKTLQ I++
Sbjct: 483 EEVTDLADYVPGSKLKADLRPYQLDGVRWLIKLYRNELGACL-ADDMGLGKTLQTISVLL 541
Query: 237 ------AAC---------------------FISAGSILVVCPAILRLSWAEELERWLPFC 269
AA F+ A + L+V PA L +W EL+++ P
Sbjct: 542 YAKEQKAALPDGSGTGNQLDMFSEVAGDEEFLQALNALIVLPASLVFNWESELKKFAP-S 600
Query: 270 LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
L H V R + + L R V++ +Y R +++ ++ +I+DES ++
Sbjct: 601 LSIYKH-VGQRRYDDIRLLRRFDVILTTYQTALRDEALLMQMEFEYIILDESQQIK---- 655
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
E + ++V D+ K + V LSGTP + D++ Q+ + P LLG Y F K
Sbjct: 656 NRESKIFQSVHDLRGKHR--VSLSGTPIENSLSDLWAQMQFINPDLLGN--YSFFKREF- 710
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS 449
+ ++ YQ + K +RL L M+RR K+ + LPP Q+ S
Sbjct: 711 ITPIEKYQIE-----DKKIRLRNLVA----PYMLRRTKEEVAKDLPPLTTQVFY-----S 756
Query: 450 EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
E+ + + + EK A + ++ DE+ Y+ L + L+ R+ +
Sbjct: 757 EMTPEQKK---MYEREKSAARNFLLENYDENSPQ----------YRILVLQSLTKLRQLV 803
Query: 510 SIHPVI------AESDGAADI----DVNPRSN-KMIIFAHHLKVLDGVQEFISEKGIGFV 558
+ HP + ES DI D RSN K + F+ ++ L+ +E ++ F
Sbjct: 804 N-HPRLISEEYTKESGKFNDILQQWDTIRRSNHKALFFSSFVQYLNLFREEFQQRKQQFS 862
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ R + F+ + EV+ +I I +GG GL+ ++A V L+ +P+ Q
Sbjct: 863 WLTGDLTANKRVEEIKKFEENAEVQSFLISIKSGGTGLNLTAADYVFILDPWWNPTTEQQ 922
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A RAHR GQ +V F KD+ +E
Sbjct: 923 AIARAHRIGQEKSVIAIKFITKDSIEE 949
>gi|313228772|emb|CBY17923.1| unnamed protein product [Oikopleura dioica]
Length = 985
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 128/518 (24%), Positives = 228/518 (44%), Gaps = 83/518 (16%)
Query: 216 GGRCLIADEMGLGKTLQAIAIAACFIS-----AGSILVVCPAILRLSWAEELERWLP-FC 269
GG ++ADEMGLGKT+Q I+ A LVVCP+ +W E E WLP F
Sbjct: 448 GG--ILADEMGLGKTVQTISFFAWLKEHHPNFTKPHLVVCPSSTMDNWKREFECWLPSFK 505
Query: 270 LPADIHLVFGHRNNPVHLTRFPR---------------VVVISYTML--HRLRKSMIEQ- 311
+ ++ + HL R + V++ +YT H + I++
Sbjct: 506 I-----FMYHGEDRRHHLKRIVKAKSDPKAEDIHKDIDVIITTYTSSNSHEADRVGIKKL 560
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
I DE H ++ + ++ + A+ R VLL+GTP + ++ I L
Sbjct: 561 GVGYAIFDEGHMLK----NMNTNRYQQLMRIGAR--RRVLLTGTPLQNNLLELVSLIKFL 614
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
P LL K+ + + ++ + + F+K R+ E +L Q ++RR+K +L
Sbjct: 615 MPDLLQKSSNTLQRIF----KLRNQESE----FAKK-RVAEARTIL-QPFILRRVKSEVL 664
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVI----NDSEK------DATND-----KTPKD 476
LPPK + + + L ++ + G++ + +EK D TN K D
Sbjct: 665 KDLPPKISEEVLVELTDNQKIFYNEIKGLLQCKLSTTEKKEQGIRDITNSFIQLRKCLSD 724
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
H+ L K ++ I F+ ++ P + E +++++F
Sbjct: 725 FQIHETCEKYASLKKFRLKKDDILNSGKFKVLDTLLPKLFE-----------EGHRVLLF 773
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + ++D ++ +++ + I ++R+DG+T DR + +F +E+ + ++ AGG+G+
Sbjct: 774 SQFVIMMDIMERYMTARKIKYMRLDGSTPVEDRLDMIDTFNADSEISLFMVSTRAGGLGI 833
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ------N 650
+ +SA V+ ++ +P QAEDR HR GQT VNI KDT + + N
Sbjct: 834 NLTSADTVIIHDIDPNPYNDKQAEDRCHRVGQTKQVNIIRLIVKDTIEVRMRKLAVEKLN 893
Query: 651 LNKSL----RCVSSATNGKYDALQEIAVEGVSYLEMSD 684
L + R V S +G A ++ V+ EM D
Sbjct: 894 LESKMDMNDRMVYSGDDGTLKAAEDEDSNDVTQAEMLD 931
>gi|182625182|ref|ZP_02952958.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
gi|177909641|gb|EDT72075.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
Length = 1069
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 125/502 (24%), Positives = 233/502 (46%), Gaps = 83/502 (16%)
Query: 185 VVDEMIGKL----------PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGK 229
V+ E++GKL PK+L + P+Q EG ++ L GG ++AD+MGLGK
Sbjct: 570 VLQEIVGKLLNKEFKRKLVPKALNAELRPYQKEGFKWINEITDLGFGG--VLADDMGLGK 627
Query: 230 TLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
TLQ IA + SI+VV P + +W +E E++ P + LV G ++ + R
Sbjct: 628 TLQIIAFLLSQKKSKSIVVV-PTSVIYNWMDEFEKFAP---SIRVGLVHGSKSKRDKVLR 683
Query: 290 -FPR--------------------VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--C 326
F R V++ +Y L K+ + I+DE+ +++
Sbjct: 684 DFKRGLGIKIEEENLKEKSYEKYDVLLTTYGTLKNDEKAYENLSFDYCIIDEAQNIKNPV 743
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ T + +K+ ++A L+GTP + +++ + + PG L
Sbjct: 744 AQATLSVKNIKSRCNIA--------LTGTPIENNLMELWSIFDFVMPGYLF--------- 786
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRL 444
T + ++ + D S L EL L+ ++RRLK+ +L +LP K ++ ++ +
Sbjct: 787 -----TKERFRERFILDES---NLSELKSLI-TPFILRRLKEDVLSELPEKLEKKYLVEM 837
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ-ELGIAKLS 503
K+ ++ S + N ++ +++K+ +D + + +L +I L + +
Sbjct: 838 KGKQKQLYSFYVK-AIKNQLNENKSSEKSGRD--KINLFAYLTKLREICLDPSLVVPDYT 894
Query: 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
G L++ I + D + K+++F+ VL ++E + I ++ +DG
Sbjct: 895 GGSSKLTVVKEIVK-------DASESGKKILLFSQFTSVLQKIEEDFKKDDISYLYLDGG 947
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T +DR V F + +K+ +I + AGGVGL+ +SA V+ + +P++ QA DRA
Sbjct: 948 TSAKDRVERVKKFNEDSNIKVFLISLKAGGVGLNLTSASVVIHFDPWWNPAVEDQATDRA 1007
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
HR GQ + V + A DT +E
Sbjct: 1008 HRFGQENKVEVIKLVANDTIEE 1029
>gi|312376441|gb|EFR23522.1| hypothetical protein AND_12719 [Anopheles darlingi]
Length = 875
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 217/503 (43%), Gaps = 69/503 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRF------GLRR----GGR--CLIADEMGLGKTLQAIAIAAC 239
++P L + P Q +GV F G+R GG ++ADEMGLGKTLQ I++
Sbjct: 243 QVPACLARHLRPHQRDGVAFLYECVTGMRMMEPPGGYYGAILADEMGLGKTLQCISLMYT 302
Query: 240 FISAGS--------ILVVCPAILRLSWAEELERWLP----FCLPADIHLVFGHRNNPVHL 287
+ G IL+V P+ L +W E+ +WL F H +H+
Sbjct: 303 LLKTGPYGKPLARRILIVTPSSLVENWDREITKWLRNERLFTFIVGPHNKLRLYAQSLHI 362
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV- 346
V++ISY ML + + + L+ DE H ++ S VK V V +K+
Sbjct: 363 P----VLIISYEMLAKQIDELETVKFDLIFCDEGHRLKNSN-------VK-VFGVLSKLE 410
Query: 347 -KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
+R VL++GTP + + + IN + PGLLG + DF Y + G L Q
Sbjct: 411 CRRRVLITGTPIQNDLAEFYSLINFVNPGLLGSYQ-DFKARYETPIIISQRPGVLPQSIE 469
Query: 406 KGV-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS 464
G+ RL ELNV+ + V+ RR ++ + LP K +I + + A+ +
Sbjct: 470 LGIERLNELNVITGRFVL-RRTQEVINRYLPEKHELVIFCHPSELQTQLLRTAL-TFYEE 527
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG--------------FREWLS 510
E+ +N TP L KI + K++G +W +
Sbjct: 528 ERSGSNAITPLQ--------LITILKKICNHP-SLVKVTGRGDPESLLHRLADQLPDWQA 578
Query: 511 IHPVIAESDGAADI---DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
+ P + D D+ + K++I +++ K LD + R+DG+T+
Sbjct: 579 MGPSDSAKLAIVDTLLEDLIVKQEKVVIVSYYNKTLDMIAGLCEHYNYKHSRLDGSTVAS 638
Query: 568 DRQSAVHSF-QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
DR V +F ++++ I ++ AGG GL+ A +V + +P+ LQA R R
Sbjct: 639 DRSKIVATFNNAASDIFILLLSAKAGGAGLNLIGASRLVLYDNDWNPANDLQAMSRVWRD 698
Query: 627 GQTSAVNIYIFCAKDTTDESHWQ 649
GQT V IY + +E +Q
Sbjct: 699 GQTRTVFIYRLLTAFSIEERIFQ 721
>gi|407477309|ref|YP_006791186.1| hypothetical protein Eab7_1462 [Exiguobacterium antarcticum B7]
gi|407061388|gb|AFS70578.1| Hypothetical protein Eab7_1462 [Exiguobacterium antarcticum B7]
Length = 876
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 209/462 (45%), Gaps = 55/462 (11%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRGGR---CLIADEMGLGKTLQAIAIAACFISAGSILVV 249
LP++L + P+Q G++F + R ++ADEMGLGKT+QAI G L+V
Sbjct: 416 LPQALHQQLYPYQRAGIQFLVNLAARDCHGILADEMGLGKTIQAIGYLETR-PPGRTLIV 474
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR-FPR--VVVISYTMLHRLRK 306
PA L +WA EL R+ P ++L+ G R + R P V +ISY L
Sbjct: 475 APASLLHNWAAELARFAP---AKTVYLLAGSRKQRLQALRDLPADGVFLISYPSLRARAD 531
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + ++ L I DE+ H + P AV + KR L+GTP +R DI+
Sbjct: 532 AHQKIEYDLAIFDEAQHFK------NPTAQTAVRLRRLRAKRRFALTGTPLENRTDDIWS 585
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+++P LL D++T FQD+S E+ L Q ++RR
Sbjct: 586 IFRVIFPSLL-----------PDLRT--------FQDWSH----MEIKRFL-QPFLLRRT 621
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN--DKTPKDSDEHDDSG 484
KQ +L P KR L ++ K + + D D+T K D
Sbjct: 622 KQEVLHDFPTKRLSHYYTELGPTQ---KKLYASYLAKLQLDTLRHLDET-KREDRIKLLA 677
Query: 485 ACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
RL +I L + +G L + + E AA ++++IF+ + K+L
Sbjct: 678 GLTRLRQICCDPALFVENYTGESTKLDLLMTLIEEKIAA-------GHRILIFSQYTKML 730
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
++E ++E+ + + G+T DR + F + EV + +I + AGG GL+ ++A
Sbjct: 731 ARIRERLAERQLTHFVLTGDTPIEDRVALCDRFN-AGEVDLFLISLKAGGTGLNLATADT 789
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ + +P++ QA DRAHR GQ S+V + T +E
Sbjct: 790 VILYDSWWNPAVEQQAADRAHRLGQQSSVEVIKLLMTGTIEE 831
>gi|302874211|ref|YP_003842844.1| SNF2-related protein [Clostridium cellulovorans 743B]
gi|307689525|ref|ZP_07631971.1| SNF2-related protein [Clostridium cellulovorans 743B]
gi|302577068|gb|ADL51080.1| SNF2-related protein [Clostridium cellulovorans 743B]
Length = 1078
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/479 (25%), Positives = 230/479 (48%), Gaps = 61/479 (12%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVR-------FGLRRGGRCLIADEMGLGKTLQAIAIAA 238
V+E+ ++P SL ++ +Q G R +G+ GG ++ADEMGLGKTLQ+IA A
Sbjct: 602 VNELDFEIPTSLEKIMREYQKVGFRWFKTLAVYGM--GG--ILADEMGLGKTLQSIAFLA 657
Query: 239 CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPRVVV 295
G LVV P L +W +E+ R FC ++ G + + + + + V++
Sbjct: 658 SEKEKGKSLVVAPTSLIYNWEQEIIR---FCPELKAIVIAGDKKSRLEAIKEMDYYDVII 714
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
SY L + + + + +I+DE+ ++ + KAV D+ AK++ L+GT
Sbjct: 715 TSYPTLTKDMEIYEDISFEYMIIDEAQKIKNRDTLT----TKAVKDIKAKIR--FALTGT 768
Query: 356 P---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
P SL+ + IF + + PG + + F++ Y +V ++ + + +K ++
Sbjct: 769 PIENSLTELWSIF---DFVMPGYIFSHR-RFSELY-EVPIIKNGDNKALDNLNKKIK--- 820
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRLLLKRSEIVSA--KAAVGVIND--SEK 466
++RRLK ++ +LP K +R + + ++ ++ A K G ++D EK
Sbjct: 821 -------PFILRRLKSEVIKELPEKIEKRLYVDMTKEQKKLYFAYVKHIQGELDDEVKEK 873
Query: 467 DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
N K + CC G G ++ ++ V+AE V
Sbjct: 874 GFNNSKIKILAALTRLRQICCDPASFLDDYKG-----GSGKYEALSEVLAE--------V 920
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
++K+++F+ VL +++ +++ I + +DG+T ++R V F +++ ++ +
Sbjct: 921 LAGNHKVLLFSQFTSVLKNIEKLLTKNKITYKYLDGSTKSQERLKIVDEFN-NDDSQVFL 979
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I + AGG GL+ + A V+ + +PS+ QA DRAHR GQ + V + +K T +E
Sbjct: 980 ISLKAGGTGLNLTGADVVIHFDPWWNPSVENQATDRAHRIGQKNTVEVIKLISKGTIEE 1038
>gi|403337139|gb|EJY67775.1| hypothetical protein OXYTRI_11712 [Oxytricha trifallax]
Length = 1091
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/544 (22%), Positives = 244/544 (44%), Gaps = 49/544 (9%)
Query: 126 KACVYKLRDYNPVLTCLKN---SAGIEVEGIPWVTLNVVE-KLSHSIDTGRWNPCRPEHL 181
+ V + +Y P++ LK + I +E IP +N+++ ++ ++ GR + ++
Sbjct: 400 RVWVISVLNYEPLMQDLKRICLTNNIHIEDIPQFAINLMKVQIPFTLQNGR--KSQYDYK 457
Query: 182 SDEVVDEMIGK-LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
D V + + LP + + FQ +G+ G++ GR LI D+ G GK+LQA+ ++ +
Sbjct: 458 KDPTVRLKLEEFLPPLIYRQLYSFQRDGIMKGIKFNGRILINDDFGTGKSLQALGLSIAY 517
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+ +L++CP + W E+ +WLP DI+ + RN+ T ++V+I Y +
Sbjct: 518 RNEWPLLILCPRFCQYMWRYEILKWLP---GYDINRIQIIRNDKQEFTSQFQMVIIPYDI 574
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + + + I DE + E + K ++++ +K+KR++LL+G+ +
Sbjct: 575 AATIPVRIENFGFKVCIADEVQLF----KQRETKTNKILIELISKMKRVILLTGSNLTKK 630
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
P +I+ + M+ P ++ Y+F YCD + Q + G DFS + EL LL +
Sbjct: 631 PQEIYSMMKMVRPDIM-PGFYEFGYRYCDPR--QSFDG---IDFSNAGNMIELKQLLDKR 684
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV-------GVINDS-----EKDA 468
+ ++++ +LP RQ + + + S IV + + V N E
Sbjct: 685 IQTIFKRKYVFNELPDIVRQKLEVHCETSIIVKMQQLLLNYVVPREVQNPDLSFFEEMFL 744
Query: 469 TNDKTPKD------SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522
T +TP D DDS K+S+Q+ + ++ + A +
Sbjct: 745 TYFQTPDKVQSKFLCDPIDDS-------KLSFQKSLVQIFRDLYDYSGQAKLKATYEVID 797
Query: 523 DIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+I N +++IF +HL + +++ ++ K + F+ + N +Q F +
Sbjct: 798 NILEN--GMRVLIFGYHLYFITAIEDHLTSK-VKFLYLGKNVDTDYKQDICQKFNEDDSY 854
Query: 583 KIAIIGITAGGVGLDFSSAQNVV-FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
K +I ++ + F + V+ F E + M +AE G SA N+ +
Sbjct: 855 KAVLIDLSEDLSDIQFLTPNTVILFAETFWNWDYMEKAESLIVTPGMKSANNVIYLFGRY 914
Query: 642 TTDE 645
T DE
Sbjct: 915 TLDE 918
>gi|320581104|gb|EFW95326.1| transcriptional accessory protein [Ogataea parapolymorpha DL-1]
Length = 1878
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 228/519 (43%), Gaps = 88/519 (16%)
Query: 192 KLPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC--FISAGS- 245
+LP S+ + +Q EGV F + ++ D+MGLGKTLQ I I A + A
Sbjct: 1277 ELPVSIRATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVASDHHLRAEEH 1336
Query: 246 ------------ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGH---RNNPVHLTRF 290
L+VCP L W +E E++ P ++ + G R +
Sbjct: 1337 KKTHSTETRKLPSLIVCPPSLTGHWEQEFEQYAPLL---NVVVYAGSPSLRASIRSQLAE 1393
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
VVV SY ++ + + D+ ++DE H ++ + T + VK + + + +
Sbjct: 1394 ADVVVTSYDVVRNDVEFVSSIDYNYCVLDEGHIIK-NANTKLTQSVKRI-----RAEHRL 1447
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKY---DFAKTYCDVKTVQGYQGQLFQDFSKG 407
+LSGTP + +++ + L PG LG K FAK +T +G + Q +
Sbjct: 1448 VLSGTPIQNNVLELWSLFDFLMPGFLGTEKMFQDRFAKPIALSRTNKGPKEQ----EAGA 1503
Query: 408 VRLEELNVLLKQTV--MIRRLKQHLLVQLPPK------------RRQIIRLLLKRSEIVS 453
+ LE L+ KQ + M+RRLK+ +L LPPK ++Q+ + +K+ +
Sbjct: 1504 LALEALH---KQVLPFMLRRLKEDVLSDLPPKIIQDYYCELSSLQKQLYKDFIKKQKTNV 1560
Query: 454 AK---------------AAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
K A+ + A TPK +D + + ++
Sbjct: 1561 EKDLHASDESQSKQHIFQALQYMRKLCNHAALVLTPKHPQYND------VMKYLKTYDMD 1614
Query: 499 IAKLSGFREWLSIHPVIAE----SDGAADIDVNPRSN-----KMIIFAHHLKVLDGVQEF 549
I + + +S+ ++ E SDG V P N + +IF +LD V+
Sbjct: 1615 IRDIEHSPKLMSLKNLLLECGIGSDGGQK-GVIPAENVISQHRALIFCQMKDMLDMVEND 1673
Query: 550 ISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606
+ +K G+ ++R+DG+T PR RQ V F + + ++ GG+GL+ + A V+F
Sbjct: 1674 LLKKHMPGVTYLRLDGSTEPRKRQDVVRKFNNDPSIDVLLLTTKVGGLGLNLTGADTVIF 1733
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+E +P LQA DRAHR GQ VN+Y KDT +E
Sbjct: 1734 VEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEE 1772
>gi|347525501|ref|YP_004832249.1| SNF2 family helicase [Lactobacillus ruminis ATCC 27782]
gi|345284460|gb|AEN78313.1| SNF2 family helicase [Lactobacillus ruminis ATCC 27782]
Length = 1171
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 216/477 (45%), Gaps = 65/477 (13%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACF-------IS 242
LP L + P+Q EG R+ L G ++ADEMGLGKTLQ I + +
Sbjct: 700 LPSGLNAKLRPYQEEGYRWMASLANGNFGGILADEMGLGKTLQTITLLLAAKDDKISQVG 759
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
+G L+V PA L +W ELE + P I+ R++ + +V+ +Y L
Sbjct: 760 SGQALIVTPAALLYNWQNELENFAPTLKTLVINGTKKQRHDLLADVADYDIVLTTYDQLK 819
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R + +E ++ I+DE+ +++ S + KAV + AK + L+GTP +R
Sbjct: 820 RDFEDYLELEFEYEIIDEAQNIK----NSTTQASKAVKTIDAKTR--FALTGTPIENRLS 873
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+++ + + PG L +Y + + + ++ + D KG++ L+K V
Sbjct: 874 ELWSIFDYVMPGYLF--------SYNEFR--EQFERPIMIDEEKGMQ----KALIKMIVP 919
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS-AKAAVGVINDSEKDATNDKTPKDSDE 479
++RR K +L LP K ++R +K G+ + + + K +DE
Sbjct: 920 FVLRRKKSQVLKDLPEK--------IERPYYAEMSKKQAGLYQAMVNELRTELSQKSADE 971
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD-----GAADIDVN------P 528
S KI +AKL+ R+ + P + SD G D +
Sbjct: 972 FKQS-------KIEI----LAKLTKIRQ-ICCDPSLVYSDYDGESGKTDTCMELIESALS 1019
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++I+F+ + +L +++ + ++ I F +I G T +R V F N+V I +I
Sbjct: 1020 GGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFN-QNDVPIFLIS 1078
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ A ++ + + + QA DRAHR GQT V +Y KDT +E
Sbjct: 1079 LKAGGTGLNLVGADVIIHYDPWWNEAAQNQATDRAHRIGQTKNVLVYKLIVKDTIEE 1135
>gi|402889350|ref|XP_003907981.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A-like protein 1-like,
partial [Papio anubis]
Length = 328
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 136/267 (50%), Gaps = 36/267 (13%)
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
VM+RRLK +L QLP K+R+I+ + R ++A+ + +++ T DKT + +
Sbjct: 15 VMLRRLKSDVLSQLPAKQRKIVVIAPGR---INARTRAALDAAAKEMTTMDKTKQQQKD- 70
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
A + + AK+ E++ D+ + R K ++FAHH
Sbjct: 71 ----ALI----LFFNRTAEAKIPSVIEYI------------LDLLESGR-EKFLVFAHHK 109
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
VLD + + + K + +RIDG+T +R+ FQLS +A++ ITA +GL FSS
Sbjct: 110 VVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSS 169
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A VVF EL +P +++QAEDR HR GQTS+V I+ AK T D+ W + + ++
Sbjct: 170 ADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV--- 226
Query: 661 ATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E + ++ EM++ TD
Sbjct: 227 --------LAEAGLSETNFSEMTESTD 245
>gi|403372559|gb|EJY86178.1| hypothetical protein OXYTRI_15831 [Oxytricha trifallax]
Length = 982
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 124/544 (22%), Positives = 244/544 (44%), Gaps = 49/544 (9%)
Query: 126 KACVYKLRDYNPVLTCLKN---SAGIEVEGIPWVTLNVVE-KLSHSIDTGRWNPCRPEHL 181
+ V + +Y P++ LK + I +E IP +N+++ ++ ++ GR + ++
Sbjct: 394 RVWVISVLNYEPLMQDLKRICLTNNIHIEDIPQFAINLMKVQIPFTLQNGR--KSQYDYK 451
Query: 182 SDEVVDEMIGK-LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
D V + + LP + + FQ +G+ G++ GR LI D+ G GK+LQA+ ++ +
Sbjct: 452 KDPTVRLKLEEFLPPLIYRQLYSFQRDGIMKGIKFNGRILINDDFGTGKSLQALGLSIAY 511
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+ +L++CP + W E+ +WLP DI+ + RN+ T ++V+I Y +
Sbjct: 512 RNEWPLLILCPRFCQYMWRYEILKWLP---GYDINRIQIIRNDKQEFTSQFQMVIIPYDI 568
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + + + I DE + E + K ++++ +K+KR++LL+G+ +
Sbjct: 569 AATIPVRIENFGFKVCIADEVQLF----KQRETKTNKILIELISKMKRVILLTGSNLTKK 624
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
P +I+ + M+ P ++ Y+F YCD + Q + G DFS + EL LL +
Sbjct: 625 PQEIYSMMKMVRPDIM-PGFYEFGYRYCDPR--QSFDG---IDFSNAGNMIELKQLLDKR 678
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV-------GVINDS-----EKDA 468
+ ++++ +LP RQ + + + S IV + + V N E
Sbjct: 679 IQTIFKRKYVFNELPDIVRQKLEVHCETSIIVKMQQLLLNYVVPREVQNPDLSFFEEMFL 738
Query: 469 TNDKTPKDS------DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522
T +TP D DDS K+S+Q+ + ++ + A +
Sbjct: 739 TYFQTPDKVQSKFLCDPIDDS-------KLSFQKSLVQIFRDLYDYSGQAKLKATYEVID 791
Query: 523 DIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+I N +++IF +HL + +++ ++ K + F+ + N +Q F +
Sbjct: 792 NILEN--GMRVLIFGYHLYFITAIEDHLTSK-VKFLYLGKNVDTDYKQDICQKFNEDDSY 848
Query: 583 KIAIIGITAGGVGLDFSSAQNVV-FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
K +I ++ + F + V+ F E + M +AE G SA N+ +
Sbjct: 849 KAVLIDLSEDLSDIQFLTPNTVILFAETFWNWDYMEKAESLIVTPGMKSANNVIYLFGRY 908
Query: 642 TTDE 645
T DE
Sbjct: 909 TLDE 912
>gi|359477431|ref|XP_003631977.1| PREDICTED: putative chromatin-remodeling complex ATPase chain
isoform 2 [Vitis vinifera]
Length = 1068
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 222/472 (47%), Gaps = 71/472 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 195 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 254
Query: 257 SWAEELERWLPFCLPADI--------HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W E+ R+ P H+ R+N + +F V V S+ M + + ++
Sbjct: 255 NWMNEIRRFCPVLRAVKFLGNPDERRHI----RDNLLVAGKFD-VCVTSFEMAIKEKTTL 309
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +
Sbjct: 310 RRFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQNNLHELWSLL 363
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
N L P + ++ A+T+ + + G D + +++L+ +L+ ++RRLK
Sbjct: 364 NFLLPEI-----FNSAETFDEWFQISG-------DNDQQEVVQQLHKVLR-PFLLRRLKS 410
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
+ LPPK+ I+++ + + + +A + KD + + G R
Sbjct: 411 DVEKGLPPKKETILKVGMSQLQKQFYRALL---------------QKDLEVVNAGGERKR 455
Query: 489 LGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
L I+ Q E G +G E L + + R ++++
Sbjct: 456 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLITNSGKMVLLDKLLPKLKERDSRVL 513
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGG 593
IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG
Sbjct: 514 IFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 573
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 574 LGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 625
>gi|300122317|emb|CBK22889.2| unnamed protein product [Blastocystis hominis]
Length = 698
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 220/484 (45%), Gaps = 90/484 (18%)
Query: 204 FQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q++ + + L + G ++ADEMGLGKTL+ I++ SI L++ P
Sbjct: 4 YQIDALNWLLHQHQLGLNSILADEMGLGKTLETISLLGFLKQYLSISGPHLILVPKSTLG 63
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-------VVVISYTMLHRLRKSMI 309
+W E++++ P H G + + L R V++ +Y M + K +
Sbjct: 64 NWVNEIQKFCPSLRVLRFH---GTKEERIDLKPMVREKDRSWDVLITTYEMC-VIEKGLF 119
Query: 310 EQ-DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ DW L++DE+H ++ +E ++ VL + VK +LL+GTP + ++++ +
Sbjct: 120 QSVDWNYLVIDEAHRLK-----NENSKLSLVLRRFS-VKNRLLLTGTPLQNNLHELWALL 173
Query: 369 NMLWPGLLGKAK--YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
N L P + G +D D Q Q +++L+ +L + M+RRL
Sbjct: 174 NFLMPEIFGSQSVFHDMFNLEEDASLQQKEQ-----------MIQQLHQVL-EPFMLRRL 221
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K + LPPK I L + S + ++ND E N + +
Sbjct: 222 KSDVEHSLPPKIETI--LYVGMSSMQKELYKKVLVNDYES-IVNSRAER----------- 267
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP------------------ 528
L + Q + K++G HP + E G D ++P
Sbjct: 268 SHLLNLLMQ---LRKVAG-------HPYLFE--GVEDRSLDPMGEHVITNCGKMVLLDKL 315
Query: 529 ------RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+ +++++F+ +VLD ++++ + +G + RIDG+T DR+ ++SF N
Sbjct: 316 LKRLKEKGSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEINSFNAENST 375
Query: 583 K-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
K + ++ AGG+G++ ++A V+ + +P + LQAEDRAHR GQ VN+Y +
Sbjct: 376 KFVFLLSTRAGGLGINLATADTVILYDSDWNPQMDLQAEDRAHRIGQKKTVNVYRLVTEG 435
Query: 642 TTDE 645
T +E
Sbjct: 436 TVEE 439
>gi|418362320|ref|ZP_12962957.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356686454|gb|EHI51054.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 1280
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 207/467 (44%), Gaps = 62/467 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q +GVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 824 PAELLTPLRDYQKDGVRWLATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 882
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF----GHRNNPVHLTRFPRVVVISYTMLHRLR 305
P + +W EE+ R+ P ++ +V R + R +V++I+Y ML L
Sbjct: 883 VPKSVVTNWQEEVARFAP-----ELEVVVFENPSEREGVIRDARAGQVILINYGMLGSLA 937
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPY 362
+++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 938 EALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLEGDFR--LALSGTPIENHLGELW 991
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 992 SLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDSQHMALLRAVIS 1030
Query: 422 --MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1031 PFILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQS 1078
Query: 480 HDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
D L G + L + EW + E+ D + +++++F+
Sbjct: 1079 ADGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLDEAIG-NGHRVLVFSQ 1137
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ +L ++ I +K + +DG + RQ ++ F+ V + +I + AGG GL+
Sbjct: 1138 FVDLLSLLRARIEQKKWDYCYLDGGCSAKSRQDSILRFR-HEPVPLFLISLKAGGTGLNL 1196
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1197 TQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1243
>gi|327313991|ref|YP_004329428.1| SNF2 family N-terminal domain-containing protein, partial [Prevotella
denticola F0289]
gi|326946179|gb|AEA22064.1| SNF2 family N-terminal domain protein [Prevotella denticola F0289]
Length = 1340
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 217/461 (47%), Gaps = 46/461 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + + G CL AD+MGLGKT+Q A+ G+ L+
Sbjct: 879 VPKTLQAQLRDYQEEGFEWMSKLTAWGAGVCL-ADDMGLGKTVQTTALLLEQQEKGASLI 937
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL R+ P L + R+ + + +++I+Y +L+ ++ +
Sbjct: 938 VAPASVVPNWCNELRRFAP-TLNVTVLNQSEDRSKDIKEAKAGDIIIITYALLNIQQEDL 996
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
+W ++ +DE+H ++ + + KA + + A+ R V+L+GTP L+ +++F
Sbjct: 997 TAHEWNVVCLDEAHTIK----NANTKMSKAAMRLQAQ--RRVILTGTPIQNHLAELWNLF 1050
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F K + + ++G D K R +L L+ ++RR
Sbjct: 1051 QFIN---PGLLGSAE-QFKKKF--ILPIEG-------DNDKN-RQSQLRKLI-SPFLLRR 1095
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K ++ +LP K + + L E+ + + + DK ++
Sbjct: 1096 TKSEVIDELPEKNEIKLPVELSSDEMAMYEVRRRETEERVRANVGDKMSTLAEITRLRQM 1155
Query: 486 CCRLGKISYQELGIAKLSGFREW-LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
C + R+W L V+A D A +D N+ ++F+ +
Sbjct: 1156 ACSCSLVD------------RKWKLPSSKVLAFIDLAESLD--ESGNRALVFSQFTSFFE 1201
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
V++ + + + ++ +DG+T R+ V FQ + + +I + AGG+GL+ + A V
Sbjct: 1202 EVKQAMDKAKLSYLYLDGSTPMAMREKLVKDFQ-TGKCPFFLISLKAGGLGLNLTGANYV 1260
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1261 IHLDPWWNPAIEQQATDRAYRIGQKQNVTVYHLISQHTIEE 1301
>gi|300175679|emb|CBK21222.2| unnamed protein product [Blastocystis hominis]
Length = 523
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/484 (24%), Positives = 220/484 (45%), Gaps = 90/484 (18%)
Query: 204 FQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q++ + + L + G ++ADEMGLGKTL+ I++ SI L++ P
Sbjct: 4 YQIDALNWLLHQHQLGLNSILADEMGLGKTLETISLLGFLKQYLSISGPHLILVPKSTLG 63
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-------VVVISYTMLHRLRKSMI 309
+W E++++ P H G + + L R V++ +Y M + K +
Sbjct: 64 NWVNEIQKFCPSLRVLRFH---GTKEERIDLKPMVREKDRSWDVLITTYEMC-VIEKGLF 119
Query: 310 EQ-DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ DW L++DE+H ++ +E ++ VL VK +LL+GTP + ++++ +
Sbjct: 120 QSVDWNYLVIDEAHRLK-----NENSKLSLVLR-QFSVKNRLLLTGTPLQNNLHELWALL 173
Query: 369 NMLWPGLLGKAK--YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
N L P + G +D D Q Q +++L+ +L + M+RRL
Sbjct: 174 NFLMPEIFGSQSVFHDMFNLEEDASLQQKEQ-----------MIQQLHQVL-EPFMLRRL 221
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K + LPPK I+ + + + K + +ND E N + +
Sbjct: 222 KSDVEHSLPPKIETILYVGMSSMQKELYKKVL--VNDYES-IVNSRAER----------- 267
Query: 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP------------------ 528
L + Q + K++G HP + E G D ++P
Sbjct: 268 SHLLNLLMQ---LRKVAG-------HPYLFE--GVEDRSLDPMGEHVITNCGKMVLLDKL 315
Query: 529 ------RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+ +++++F+ +VLD ++++ + +G + RIDG+T DR+ ++SF N
Sbjct: 316 LKRLKEKGSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEINSFNAENST 375
Query: 583 K-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
K + ++ AGG+G++ ++A V+ + +P + LQAEDRAHR GQ VN+Y +
Sbjct: 376 KFVFLLSTRAGGLGINLATADTVILYDSDWNPQMDLQAEDRAHRIGQKKTVNVYRLVTEG 435
Query: 642 TTDE 645
T +E
Sbjct: 436 TVEE 439
>gi|429966476|gb|ELA48473.1| hypothetical protein VCUG_00082 [Vavraia culicis 'floridensis']
Length = 833
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 134/562 (23%), Positives = 244/562 (43%), Gaps = 121/562 (21%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAAC---FI-SAGSI 246
PK + + +Q+EGV + + + C++ADEMGLGKTLQ I F+ +
Sbjct: 60 PKYIRGTLREYQIEGVNWLISMHEKNINCILADEMGLGKTLQTITFLGYLKNFLKNKAPH 119
Query: 247 LVVCPAILRLSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
L++ P L +W E ++LP F A + N + T + VV+ +Y M
Sbjct: 120 LLIVPKSLLHNWKAEFTKFLPSFRLFIFHASQAEIKDTEEN-MENTNYD-VVITTYEMCI 177
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI------VLLSGTP 356
+K W L++DE+H ++ + +K+ RI +LL+GTP
Sbjct: 178 SAKKVFQRIQWCYLVIDEAHRIKNEA------------SLLSKIVRIFRCEHRLLLTGTP 225
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++++ +N L P L + D + + + Q+ D G+ ++L +
Sbjct: 226 LQNNVHELWALLNFLDPKL-----------FKDPEQFEKWITQMENDKKGGI--DQLRKV 272
Query: 417 LKQTVMIRRLKQHLLVQLPPKR------------RQIIRL--------LLKRSEIVSAKA 456
L Q +RR K+ + L PK+ R + ++ LL + E+ S+
Sbjct: 273 L-QLFFLRREKRDVEKTLLPKKVINLYPQLTTMQRNLYKMILEKDLTPLLNKREVKSS-- 329
Query: 457 AVGVINDSEK--------DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFR 506
+ V+ K D P +DEH +SG L K+
Sbjct: 330 LLNVVIQLRKCCNHPYLFDGMEPGPPYTTDEHLVYNSGKMMYLDKLL------------- 376
Query: 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
++ R+++++IF + LD ++++ + + + RIDG+T
Sbjct: 377 -----------------TEMKRRNSRVLIFTQMTRTLDILEDYCTMREYEYRRIDGSTSA 419
Query: 567 RDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
+R A+ F N E+ I ++ AGG+G++ ++A V+ + +P + LQA+DRAHR
Sbjct: 420 AERGEAIDEFNAENSEIFIFLLSTRAGGLGINLATADIVIMYDSDWNPQIDLQAQDRAHR 479
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC--------VSSATNGKYDALQEIAVEGV 677
GQT V ++ F + T +E K L+ +++++N L EI EGV
Sbjct: 480 IGQTKQVFVFKFITESTIEEKIIYRALKKLKLDEILVKNNLNTSSNINEKELIEILAEGV 539
Query: 678 -SYLEMSDKTDRGSEDLTLDQV 698
+ E +KT E+L ++++
Sbjct: 540 ENIFEKEEKT----EELNIEEI 557
>gi|423212842|ref|ZP_17199371.1| hypothetical protein HMPREF1074_00903 [Bacteroides xylanisolvens
CL03T12C04]
gi|392694700|gb|EIY87927.1| hypothetical protein HMPREF1074_00903 [Bacteroides xylanisolvens
CL03T12C04]
Length = 1344
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 221/462 (47%), Gaps = 47/462 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P +L + +Q++G R+ R G CL AD+MGLGKT+QAIA+ G+ LV
Sbjct: 881 VPATLQAELRDYQMDGFRWLSRLAYWGAGACL-ADDMGLGKTIQAIALMLSRGKKGASLV 939
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + L+W E+ R+ P +H G R + T +++ +Y +L+ +
Sbjct: 940 VAPASVLLNWQSEINRFAPSLTCRVLHDSCGDREQMIQETGDYDILLTTYGLLNAEVVLL 999
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
++ W ++++DE+H + + + + KA + + + + +LL+GTP LS +++F
Sbjct: 1000 SKKQWNVILLDEAHTI----KNKDTKMSKAAMQLNGEFR--LLLTGTPIQNHLSEIWNLF 1053
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
N PGLLG + K ++ Q Q ++L +L Q ++RR
Sbjct: 1054 QFAN---PGLLGTFPHFNEKFILPIEKNGDKQRQ-----------KQLKRVL-QPFLLRR 1098
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K +L +LP K ++++ E+ S + A+ N ++ N E GA
Sbjct: 1099 TKNEVLDELPQKTE-----IVQKVELSSEEMAL-YENLRQQAVAN-------IEESSLGA 1145
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVNPRSNKMIIFAHHLKVL 543
L +I+ + + L I +++ D+ ++ ++ ++F+ L
Sbjct: 1146 MQALAEITRLRQAACHPALINDKLKIDS--SKTKVFMDLVDELIGNQHRALVFSQFTSHL 1203
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+++ + +GI ++ +DG +R+ V FQ E + +I + AGG GL+ ++A
Sbjct: 1204 ALIRKELDLQGISYLYLDGTMSVNEREKQVSRFQ-QGEGHLFLISLKAGGTGLNLTAADY 1262
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DR +R GQT V IY A +T +E
Sbjct: 1263 VIHLDPWWNPAVEDQASDRVYRIGQTRPVTIYRLIASNTIEE 1304
>gi|225432366|ref|XP_002275787.1| PREDICTED: putative chromatin-remodeling complex ATPase chain
isoform 1 [Vitis vinifera]
gi|297736902|emb|CBI26103.3| unnamed protein product [Vitis vinifera]
Length = 1080
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 114/482 (23%), Positives = 225/482 (46%), Gaps = 71/482 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSI 246
P + + +QL G+ + +R G ++ADEMGLGKTLQ I++ G
Sbjct: 197 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPH 256
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADI--------HLVFGHRNNPVHLTRFPRVVVISY 298
+VV P +W E+ R+ P H+ R+N + +F V V S+
Sbjct: 257 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHI----RDNLLVAGKFD-VCVTSF 311
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
M + + ++ W +I+DE+H ++ +E + + + + R+ L++GTP
Sbjct: 312 EMAIKEKTTLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQ 365
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ ++++ +N L P + ++ A+T+ + + G D + +++L+ +L+
Sbjct: 366 NNLHELWSLLNFLLPEI-----FNSAETFDEWFQISG-------DNDQQEVVQQLHKVLR 413
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
++RRLK + LPPK+ I+++ + + + +A + KD +
Sbjct: 414 -PFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQFYRALL---------------QKDLE 457
Query: 479 EHDDSGACCRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADI 524
+ G RL I+ Q E G +G E L +
Sbjct: 458 VVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--EHLITNSGKMVLLDKLLP 515
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVK 583
+ R ++++IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E
Sbjct: 516 KLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKF 575
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T
Sbjct: 576 VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 635
Query: 644 DE 645
+E
Sbjct: 636 EE 637
>gi|90409119|ref|ZP_01217240.1| Snf2 family protein [Psychromonas sp. CNPT3]
gi|90309770|gb|EAS37934.1| Snf2 family protein [Psychromonas sp. CNPT3]
Length = 1080
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 220/477 (46%), Gaps = 66/477 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAAC----FISAG 244
++P SL + +QL+G+ + L G ++AD+MGLGKT+Q +A +
Sbjct: 607 QVPSSLCATLRDYQLQGLNWLLFLNEYGFSGVLADDMGLGKTVQTLAYLLYKKEHNMCTE 666
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
+V+CP L +W E ++ P +H V H++ L +V+ +Y ++ R
Sbjct: 667 PAIVICPTSLIGNWLNEAHKFTPTLKVLVLHGVDRHQHFDSILQY--DLVITTYPLIGRD 724
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
K + E ++ LI+DE+ ++ +K T K++ + AK + + L+GTP +
Sbjct: 725 FKHLNEIVFSDLILDEAQTIKNPLAKMT------KSIKQLNAKCR--LCLTGTPMENHLG 776
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ + L PG LG F + Y K ++G Q QD+ + Q +
Sbjct: 777 ELWSLFDFLMPGFLGNYT-TFNRVY--RKGIEGEGNQQIQDWL---------IQKTQPFL 824
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK-TPKDSDEHD 481
+RR K + +LP K I +++L + ++ + +D +K + E
Sbjct: 825 LRRTKDEVAKELPEKTEIIHKIILPNDQRTLYESIRITMEAKVRDLLKEKGMARSRIEFL 884
Query: 482 DS-----GACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN--- 531
D+ ACC RL K+ H +S D +N S
Sbjct: 885 DALLKLRQACCDPRLVKLE------------------HAKEVKSSAKLDFLMNMVSEMVE 926
Query: 532 ---KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++IF+ +L ++E + EKGI FV++ G T RDR + + FQ S EV I +I
Sbjct: 927 EGRRILIFSQFATMLTLIEEELIEKGIDFVKLTGQT--RDRGAIIERFQ-SGEVPIFLIS 983
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVGL+ ++A V+ + +P++ QA DRA+R GQ V +Y + T +E
Sbjct: 984 LKAGGVGLNLTAADTVIHYDPWWNPAVENQATDRAYRIGQDKPVFVYKLICEQTVEE 1040
>gi|353237437|emb|CCA69410.1| probable SNF2-component of SWI/SNF global transcription activator
complex [Piriformospora indica DSM 11827]
Length = 1354
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 127/545 (23%), Positives = 239/545 (43%), Gaps = 75/545 (13%)
Query: 163 KLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL- 220
KL + D G+ + R H ++E I P+ L L +QL+G+++ + L
Sbjct: 449 KLEDADDKGKVDYYRVAHR----INEKITTQPRILTGGTLKEYQLKGLQWMVSLYNNKLD 504
Query: 221 --IADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELERWLP-FCLPAD 273
+ADEMGLGKT+Q I++ I G LV+ P +W+ E +W P + +
Sbjct: 505 GILADEMGLGKTIQTISLITYLIERKNEPGPYLVIVPLSTLTNWSLEFAKWAPSLTVISY 564
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
L RN + L V++ +Y + + R + + W +I+DE H ++ +
Sbjct: 565 KGLPNVRRNLQMQLRNQFHVLLTTYEYIIKDRPILCKWKWTHMIIDEGHRMKNTN----- 619
Query: 334 EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
++ L + ++L+GTP + +++ +N + P K + +++
Sbjct: 620 SKLSQTLTQFYTSRHRLILTGTPLQNNLPELWALLNFVLP-----------KVFNSIQSF 668
Query: 394 QGYQGQLFQDFSKGVRLE---ELNVLLKQTV-------MIRRLKQHLLVQLPPKRRQIIR 443
+ F + G ++E E ++L+ + + ++RRLK+ + LP K ++I+
Sbjct: 669 DEWFNTPFANTGGGDKIELNEEESLLIIRRLHKVLRPFLLRRLKKDVEADLPDKSERVIK 728
Query: 444 LLLK--RSEIVSAKAAVGVINDSEKDATNDKT----------------PKDSDEHDDSGA 485
+ + +S + G+I + + P D+ + S A
Sbjct: 729 VRMSGLQSRLYYQMQNFGMIVSGAGNGKAQQIKGLQNVLMQYRKICQHPYLFDDVETSMA 788
Query: 486 CCRLGKISYQELGIAKLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
LG + + ++SG E + + P + S +++++F KV+D
Sbjct: 789 NHGLGGMEQ----LIRVSGKMELCNRMLPKLFRS-----------GHRVLMFFQMTKVMD 833
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQN 603
+++++ +G F+R+DG+T P DR + F N I ++ AGG+GL+ +A
Sbjct: 834 IMEDYLRYRGWEFLRLDGSTKPEDRAELLAKFNAPNSPYNIFLLSTRAGGLGLNLQTADT 893
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
V+ + +P LQA+DRAHR GQT V IY F + + +ES L
Sbjct: 894 VILYDSDWNPHADLQAQDRAHRIGQTKIVRIYRFVTEKSIEESMLARARNKLNIDEKVIQ 953
Query: 664 -GKYD 667
GK+D
Sbjct: 954 AGKFD 958
>gi|451845347|gb|EMD58660.1| hypothetical protein COCSADRAFT_264941 [Cochliobolus sativus
ND90Pr]
Length = 889
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 146/580 (25%), Positives = 250/580 (43%), Gaps = 99/580 (17%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHL----------SDEVVDEMIGK-LPKSLLDVIL 202
P ++ V+ + + SI R +P P L ++VD ++ L K L D
Sbjct: 196 PLLSTTVMPQRNPSIPQPRHDPNAPNALIMKRPDSCPKGKQIVDVVVDPVLSKHLRD--- 252
Query: 203 PFQLEGVRF------GLR-RGGRCLIADEMGLGKTLQAIAIAACFISAGSI--------- 246
Q EGV+F G+R G ++ADEMGLGKTLQ I + + I
Sbjct: 253 -HQREGVQFLYECVMGMRCEGEGAIMADEMGLGKTLQTITLLWTLMKQNPIHDSPPLIKK 311
Query: 247 -LVVCPAILRLSWAEELERWLP------FCLPAD----IHLVFGHRNNPVHLTRFPRVVV 295
L+VCPA L +W E +WL F L A + G N +++
Sbjct: 312 ALIVCPAGLVDNWKREFRKWLGNERVGVFVLDAKNKKIANFTMGKSYN---------IMI 362
Query: 296 ISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLS 353
+ Y ML +++ + + ++I DE H ++ + KA+L + + +R ++LS
Sbjct: 363 VGYEMLRIVQEELKKGSGVDIVIADEGHRLKTASN-------KAMLAIQSLNTERRIILS 415
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKG-VRLE 411
GTP + + + I+ + PGLLG+ + F +++ ++ ++ Q + + KG R +
Sbjct: 416 GTPLQNDLGEFYTAIDFVNPGLLGQ-RSAFKRSF-ELPIMRSRQPDASEAELEKGEARWK 473
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLK----RSEIVSAK 455
EL V L MIRR + L LPPK I+ R +L R + S
Sbjct: 474 EL-VSLTSQFMIRRTAEVLSKYLPPKTEHIVFCRPTKGQAETYRAILGSPTFRLALGSTD 532
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGA---CCRLGKISYQELGIAKLSGFREWLS-- 510
A+ +IN +K + K S ++DD+ + + I + L + S L
Sbjct: 533 IALQLINVLKKVCNSPSLLKSSKDNDDTPSEMLQSIIPLIPSKILSSSASSAKLRLLDSL 592
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
IH + ++ K++I +++ LD ++ + F+R+DG+T RQ
Sbjct: 593 IHSIYTTTE-----------EKIVIVSNYTTTLDMIERLLVSLSYTFLRLDGSTPASKRQ 641
Query: 571 SAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
S V F + + ++ +GGVGL+ A +V ++ +P+ LQA R HR GQ
Sbjct: 642 SLVEKFNKTPKTTSFAFLLSAKSGGVGLNLIGASRIVLFDIDWNPATDLQAMARIHRDGQ 701
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
+Y F + DE +Q + ++ + K A
Sbjct: 702 KLPCKVYRFLVQGGLDEKIYQRQVMKMGLANAVVDNKASA 741
>gi|423207442|ref|ZP_17193998.1| hypothetical protein HMPREF1168_03633 [Aeromonas veronii AMC34]
gi|404620509|gb|EKB17406.1| hypothetical protein HMPREF1168_03633 [Aeromonas veronii AMC34]
Length = 1278
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 122/469 (26%), Positives = 208/469 (44%), Gaps = 66/469 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 822 PPELLTALRDYQKEGVRWMATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 880
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------VVVISYTMLHR 303
P + +W EE+ R+ P ++ +V +NP R R V++I+Y ML
Sbjct: 881 VPKSVVTNWQEEVARFAP-----ELEVVI--FDNPAERERIIRDAKAGQVIIINYGMLGS 933
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
L +++ + W +++DE+ + + + + K + + + + LSGTP L
Sbjct: 934 LAEALKGRRWPSMVLDEAQQI----KNAGTQRAKLLFQLEGDFR--LALSGTPIENHLGE 987
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F IN PGLLG G+ + F K V+ + LL+
Sbjct: 988 LWSLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAV 1026
Query: 421 V---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1027 ISPFILRRLKQEVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQV 1074
Query: 478 DEHDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
D L G + L + EW + E+ + ++ +++++F
Sbjct: 1075 QSADGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAIDG-GHRVLVF 1133
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + +L ++ I +K + +DG + RQ ++ F+ V + +I + AGG GL
Sbjct: 1134 SQFVDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFR-HEAVPLFLISLKAGGTGL 1192
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1193 NLTQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1241
>gi|255072403|ref|XP_002499876.1| SNF2 super family [Micromonas sp. RCC299]
gi|226515138|gb|ACO61134.1| SNF2 super family [Micromonas sp. RCC299]
Length = 2637
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 138/562 (24%), Positives = 237/562 (42%), Gaps = 96/562 (17%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGL 213
P+V V++KL D + E V + P+S+ V+ +QLEG+R+ +
Sbjct: 446 PFVEKKVLDKLEEVSDG---------YKPSEKVLVPVDNQPESIKAVLREYQLEGIRWLV 496
Query: 214 RR---GGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELERWL 266
R G C++ADEMGLGKTLQ+I+ A G LV+CP + SW +EL++W
Sbjct: 497 RMFDDGCSCILADEMGLGKTLQSISFLAALRELRGVDGPHLVICPLSVLSSWMDELQKWC 556
Query: 267 PFCLPADIHLVFGHRNNPVHLTRFPR----------VVVISYTMLHRLRKSMIEQD---W 313
P + +V H + R + V V +Y M ++ W
Sbjct: 557 P-----KLRVVRLHSTDEGERQRLRKEVVMNVASYDVAVTTYEMACNPTFNLTLSQKVYW 611
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR--IVLLSGTPSLSRPYDIFHQINML 371
+I+DE H V+ E A V ++V R +LL+GTP + ++++ ++ L
Sbjct: 612 RTMILDEGHKVK--------NEDTAAHSVLSRVHRQHTLLLTGTPVQNNLHELYAILSFL 663
Query: 372 WPGLLGK-AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV--LLKQTVMIRRLKQ 428
P + K A +D A D+ T S V ++L+ L + ++RR+K
Sbjct: 664 HPDVFTKSAAFDEA---FDLGTS-----------SHKVDADKLDFAHYLMKPFVLRRVKG 709
Query: 429 HLLVQLPPKRRQII-------------RLLLKRSEIVSAKAAVGV--INDSEKDATNDKT 473
+ V LP K I RLL++ S +++ A + + A +D
Sbjct: 710 EVEVSLPEKTETKIMCPLSPAQTFWYRRLLMRESSALTSVEAAELRKASGGGSGAMDDGG 769
Query: 474 PKDSDEHDDSGA--------------CCRLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
DS E +G +L K A + + + ++ S
Sbjct: 770 GTDSPEPSGAGGKKENAGDFKKLQSLLMQLRKCCNHPYLFAGTDVPEDGVPVEELVEASG 829
Query: 520 GAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
A +D + + +++++F+ +LD + +F++ +G F R+DG+T R +
Sbjct: 830 KLAVLDRILKRLKDQGHRVVLFSQFTSMLDILSDFLTLRGYQFARLDGSTNRVQRSIDIA 889
Query: 575 SFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+F N A ++ AGG+G++ +A V + +P + QA R HR GQ V+
Sbjct: 890 AFNRPNSPMFAFLLSTRAGGLGVNLQTADTCVLYDSDWNPQVDTQAMARVHRIGQKKPVH 949
Query: 634 IYIFCAKDTTDESHWQNLNKSL 655
+Y T +E Q K L
Sbjct: 950 VYRLVTAGTVEERMQQRAEKKL 971
>gi|417973915|ref|ZP_12614748.1| hypothetical protein ANHS_1435 [Lactobacillus ruminis ATCC 25644]
gi|346329733|gb|EGX98019.1| hypothetical protein ANHS_1435 [Lactobacillus ruminis ATCC 25644]
Length = 1171
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 217/477 (45%), Gaps = 65/477 (13%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACF-------IS 242
LP L + P+Q EG R+ L G ++ADEMGLGKTLQ I + +S
Sbjct: 700 LPSGLNAKLRPYQEEGYRWLASLANGNFGGILADEMGLGKTLQTITLLLAAKDDKISQVS 759
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
+G L+V PA L +W E E + P I+ R++ + +V+ +Y L
Sbjct: 760 SGQALIVTPAALLYNWQNEFENFAPTLKTLVINGTKKQRHDLLADVADYDIVLTTYDQLK 819
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R + +E ++ I+DE+ +++ S + KAV + AK + L+GTP +R
Sbjct: 820 RDFEDYLELEFEYEIIDEAQNIK----NSTTQASKAVKAIDAKTR--FALTGTPIENRLS 873
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+++ + + PG L +Y + + + ++ + D KG++ L+K V
Sbjct: 874 ELWSIFDYVMPGYLF--------SYNEFR--EQFERPIMIDEEKGMQ----KALIKMIVP 919
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS-AKAAVGVINDSEKDATNDKTPKDSDE 479
++RR K +L LP K ++R +K G+ + + + K +DE
Sbjct: 920 FVLRRKKSQVLKDLPEK--------IERPYYAEMSKKQAGLYQAMVNELRTELSQKSADE 971
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESDGAADIDVN---------P 528
S KI +AKL+ R+ + P V ++ DG + N
Sbjct: 972 FKQS-------KIEI----LAKLTKIRQ-ICCDPSLVYSDYDGESGKTDNCMELIESALS 1019
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++I+F+ + +L +++ + ++ I F +I G T +R V F N+V I +I
Sbjct: 1020 GGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFN-QNDVPIFLIS 1078
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ A ++ + + + QA DRAHR GQT V +Y KDT +E
Sbjct: 1079 LKAGGTGLNLVGADVIIHYDPWWNEAAQNQATDRAHRIGQTKNVLVYKLIVKDTIEE 1135
>gi|145298464|ref|YP_001141305.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851236|gb|ABO89557.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 1280
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 207/467 (44%), Gaps = 62/467 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P LL + +Q +GVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 824 PAELLTPLRDYQKDGVRWLATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 882
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF----GHRNNPVHLTRFPRVVVISYTMLHRLR 305
P + +W EE+ R+ P ++ +V R + R +V++I+Y ML L
Sbjct: 883 VPKSVVTNWQEEVARFAP-----ELEVVVFENPSEREGVIRDARAGQVILINYGMLGSLA 937
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPY 362
+++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 938 EALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLEGDFR--LALSGTPIENHLGELW 991
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 992 SLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVIS 1030
Query: 422 --MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1031 PFILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQS 1078
Query: 480 HDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
D L G + L + EW + E+ D + +++++F+
Sbjct: 1079 ADGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLDEAIG-NGHRVLVFSQ 1137
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ +L ++ I +K + +DG + RQ ++ F+ V + +I + AGG GL+
Sbjct: 1138 FVDLLSLLRARIEQKKWDYCYLDGGCSAKSRQDSILRFR-HEPVPLFLISLKAGGTGLNL 1196
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1197 TQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1243
>gi|358255487|dbj|GAA57184.1| chromodomain-helicase-DNA-binding protein 3 [Clonorchis sinensis]
Length = 1866
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 133/521 (25%), Positives = 225/521 (43%), Gaps = 109/521 (20%)
Query: 172 RWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLG 228
+W +P +LS E V+ P+QLEGVR+ ++ADEMGLG
Sbjct: 481 KWQNTQPSYLSPEQ------------HAVLHPYQLEGVRWLWHAYHNHVNAILADEMGLG 528
Query: 229 KTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVF--GHRN 282
KT+Q IA+ G LV P +WA E E W P + H++ G R+
Sbjct: 529 KTVQVIALLYSLWKERNDYGPFLVAAPLSTLQNWAREFEVWAP-----EFHVLVYSGERS 583
Query: 283 NPVHLTRFP------------RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SK 328
+ R+ V++ S+ + R + DW++L+VDE+H ++ S+
Sbjct: 584 ARATMQRYDFRIPNSGGVPAFHVLITSHELACIERSCLQGFDWSVLVVDEAHRLKNKQSR 643
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
E + KA +LL+GTP + ++FH + + P KT
Sbjct: 644 LFKEASQYKAGFK--------MLLTGTPLQNNLEELFHLLYFIEP-----------KTVT 684
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK----------- 437
D KT+ + + + SK R+ L+ LK ++RRLK ++ LP K
Sbjct: 685 DFKTL----SEQWANMSKEQRIASLHDQLKNH-LLRRLKSDVIKDLPKKSEVVVMVDMSV 739
Query: 438 -RRQIIRLLL-KRSEIVSAKAAVGVINDSEK--------DATNDKTPK-DSDEHDDSGAC 486
+R++ +L+L K E + + + + +K A + +P+ D D+ +
Sbjct: 740 LQRKLYKLILTKNYEELRCGSLMNSLVHLQKVCDHPYLLPAGDSISPRIDPDQPNARYEP 799
Query: 487 CRLGKISYQELGIAK-LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
L +S + + + + L G RE ++++I++ +LD
Sbjct: 800 KALVHVSGKMVVLMEMLRGLRE---------------------GGHRVLIYSRMTSMLDI 838
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNV 604
++E ++ +G F RIDG RQ V F N E I ++ AGG G++ +SA V
Sbjct: 839 LEEALTNEGYAFERIDGRVKGPLRQIIVDRFNARNCETFIFLLSTRAGGEGINLASADTV 898
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + +P LQA RAHR GQ+ V +Y F + + +E
Sbjct: 899 ILYDSDWNPQCDLQALSRAHRIGQSRHVVVYRFVTRHSMEE 939
>gi|406672104|ref|ZP_11079338.1| hypothetical protein HMPREF9706_01598 [Facklamia hominis CCUG
36813]
gi|405579414|gb|EKB53520.1| hypothetical protein HMPREF9706_01598 [Facklamia hominis CCUG
36813]
Length = 1027
Score = 123 bits (308), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 124/469 (26%), Positives = 224/469 (47%), Gaps = 69/469 (14%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGS--ILVVCPAIL 254
++ P+Q++GV + L+ G ++AD+MGLGK+LQ IA A +S + IL+V PA L
Sbjct: 564 ILYPYQVQGVEWLLKLRAMGLGGILADDMGLGKSLQLIAYMASVVSVLTKPILIVVPASL 623
Query: 255 RLSWAEELERWLPFCLPADIHLVFG----HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
+W +EL++ F +P HL+ G R P +++ SY L R +
Sbjct: 624 IYNWQKELQK---FPIPVQSHLITGKAAQRRAIIEAYGNLPGILITSYDYLRRDLAYYQD 680
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ L++DE +++ ++ + +A+ + A + L+GTP + +++ +
Sbjct: 681 LTFDTLVLDEGQYIK----NAQSQTARAIKTLKADYR--FALTGTPMENNLAELWSLFDF 734
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLK 427
L PG L Y + K ++ + D K +E + LKQ + M+RR+K
Sbjct: 735 LLPGYL----YSYPK----------FKKRFEHDIVKEDAVEA-STKLKQMIEPFMLRRMK 779
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ ++ LP K L+ + IVS +A+ + + K +++ E D+ A
Sbjct: 780 KEVMQDLPDK--------LEENYIVSLEASEEKLYQASLMEAKQKLAQEAGE--DAQAMQ 829
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVI-------AESDGAADIDVNPRS----NKMIIF 536
L A L+ R+ L++ P + A S A I++ ++ +++F
Sbjct: 830 VL----------ALLTRLRQ-LALDPRLIYDNIQQASSKMKAAIELIQQALANGQSVLVF 878
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
++ LD +Q+ ++++ I + + G T RQ AV FQ S ++ +I + AGG GL
Sbjct: 879 SNFTSALDLLQDSLTDRAIPCLILTGQTPKLARQRAVEQFQASPG-QVFLISLKAGGTGL 937
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ L+ + S QA DRA+R GQ + V +Y AK T +E
Sbjct: 938 NLTQASIVIHLDPWWNESAQNQATDRAYRIGQENNVTVYKLIAKGTLEE 986
>gi|392572066|gb|EIW65238.1| hypothetical protein TRAVEDRAFT_68776 [Trametes versicolor FP-101664
SS1]
Length = 1455
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 208/462 (45%), Gaps = 61/462 (13%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ I + G LV+ P +W+ E +W P ++
Sbjct: 604 ILADEMGLGKTIQTISLITFLIESKRQRGPYLVIVPLSTMTNWSGEFAKWAP-----NVS 658
Query: 276 LVFGHRNNP---------VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326
++ ++ NP + T F +VV+ +Y + + R + W +I+DE H ++
Sbjct: 659 MI-AYKGNPTQRKTLQTDLRTTNF-QVVLTTYEYIIKDRNHLSRLKWLYIIIDEGHRMKN 716
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ ++ L + ++L+GTP + + + LW L + K
Sbjct: 717 TQ-----SKLVQTLTQYYHSRFRLILTGTP-------LQNNLPELWALL----NFALPKV 760
Query: 387 YCDVKTVQGYQGQLFQDFSKG--VRLEELNVLL--------KQTVMIRRLKQHLLVQLPP 436
+ VK+ + F + G + L E LL + ++RRLK+ + +LP
Sbjct: 761 FNSVKSFDEWFNTPFANSGTGDKIELNEEEALLIIRRLHKVLRPFLLRRLKRDVESELPD 820
Query: 437 KRRQIIRLLLK--RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
K ++I++ + ++++ +I D + D K+ S +L KI
Sbjct: 821 KVEKVIKVRMSALQAQLYKQMKKYKMIADGK-----DTKGKNGGVKGLSNELMQLRKICQ 875
Query: 495 QELGIAKLSGFREWLS-IHPVIAESDGAADI--DVNPR----SNKMIIFAHHLKVLDGVQ 547
+ S I + S G ++ + P+ ++++IF KV+D ++
Sbjct: 876 HPFLFESVEDRVNPSSVIDDKLIRSSGKIELLHRILPKFFATGHRVLIFFQMTKVMDIME 935
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVF 606
+F+ G ++R+DG T DR V F N E K+ I+ AGG+GL+ +A VV
Sbjct: 936 DFLKMMGWKYLRLDGGTKTEDRAGHVALFNAPNSEYKVFILSTRAGGLGLNLQTADTVVI 995
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+ +P LQA+DRAHR GQT V I F + + +E+ +
Sbjct: 996 FDSDWNPHADLQAQDRAHRIGQTKVVRILRFITEKSVEEAMF 1037
>gi|323449740|gb|EGB05626.1| hypothetical protein AURANDRAFT_959, partial [Aureococcus
anophagefferens]
Length = 472
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 213/486 (43%), Gaps = 65/486 (13%)
Query: 204 FQLEGVRFGLRRGGRC-----LIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAIL 254
+QLE + + R RC ++ DEMGLGKTLQ IA A G+ LV+CP +
Sbjct: 12 YQLESLDWFADRHERCGALPCVLGDEMGLGKTLQTIAYLAWLKFEKRLPGAALVICPLSV 71
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP----------RVVVISYTMLH-- 302
+W E RW P + +V H ++ R VVV +Y M
Sbjct: 72 LSTWLGECARWCP-----RLRVVKLHSSDVDERARLRGAILDDVGSYDVVVTTYEMAKAP 126
Query: 303 RLRKSMIEQD-WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
LR +++++ W +++DE H ++ ++ T + V+ + A +LL+GTP +
Sbjct: 127 SLRSALVQRVVWRAVVLDEGHVIK-NRETEIAQTVRKMHFCTA-----LLLTGTPLQNNL 180
Query: 362 YDIFHQINMLWPGLLG-----KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+++ +N L+P A YD + D K G +L
Sbjct: 181 SELWGLLNFLYPAAFPCRDAFDAAYDLGRGVVD-KAALGAARRLLG-------------- 225
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
+M+RRLK + LPPK ++ L ++ KA + + D ++ +D+ P
Sbjct: 226 ---ALMLRRLKADVEKGLPPKLETVVHCPLSHCQLFWYKALL--LKDRDQLKLDDRGPAA 280
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREW-LSIHPVIAESDGAADID-----VNPRS 530
+L K A G ++ ++A S +D ++ R
Sbjct: 281 GGYKSLVNLLMQLRKTCCHPFLFADAEGCDPGETTLEELVAASGKLRVLDRLLVKLHARK 340
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGI 589
+++++F+ ++D + ++ + +G F R+ G+T R V +F + S+ + + ++
Sbjct: 341 HRVVVFSQFASMVDVLDDYCALRGWPFCRLTGSTNRVQRVVNVRAFNEPSSPLFLFLMTT 400
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
AGG+G++ SA VV + +P LQA R HR GQT V+IY C++ T +E Q
Sbjct: 401 RAGGLGINLQSADTVVLYDSDWNPQADLQAMARVHRLGQTKTVHIYRLCSQGTAEERVLQ 460
Query: 650 NLNKSL 655
K L
Sbjct: 461 RSQKKL 466
>gi|50308261|ref|XP_454131.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643266|emb|CAG99218.1| KLLA0E04159p [Kluyveromyces lactis]
Length = 826
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 151/659 (22%), Positives = 288/659 (43%), Gaps = 118/659 (17%)
Query: 203 PFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILR 255
P+Q EG+ + + G ++ADEMGLGKT+Q+IA+ A FI + G L+ P
Sbjct: 199 PYQKEGLNWLITLYENGLNGILADEMGLGKTIQSIALLA-FIYEMDTKGPFLIAAPLSTV 257
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------VVVISYTMLHRLRKSMI 309
+W E R+ P + G + +F + V++ SY ++ R + ++
Sbjct: 258 ENWMNEFARFAPDIPVLKYYNSEGQAARHAMMGKFFKNNKGEGVIITSYEIIIRDIELIL 317
Query: 310 EQDWALLIVDESH---HVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTPSLSRP 361
W LIVDE H ++ C + ++KRI +LL+GTP +
Sbjct: 318 SYQWKFLIVDEGHRLKNINCK--------------LIRELKRINTSNRLLLTGTPLQNNL 363
Query: 362 YDIFHQINMLWPGLLGKAK-----YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+++ +N + P + + +DF+ ++++ ++ D + + L+ +
Sbjct: 364 GELWSLLNFILPNIFSDFEIFNKWFDFSD--LNLESSSEKLTKIINDELEKNLISNLHTI 421
Query: 417 LKQTVMIRRLKQHLLV-QLPPKRRQII-------------------------RLLLKRSE 450
LK ++RRLK+++L LPPKR II + +K
Sbjct: 422 LK-PFLLRRLKKNVLAGSLPPKREYIITCPVTPLQKKYYKQALKGNLKQTIQKQAIKDFF 480
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDE--HDDSGACCRLGKIS-YQELGIAKLSGF-- 505
++A+ V N S +D K DS + +D+ G +L + ++EL +L
Sbjct: 481 TLNAEYIGTVSNKSIRDFIEWKLSADSQDIPNDNIGKMEKLYDMHIHKELLNKRLQNMMI 540
Query: 506 -------REWLSIHPVIAESD----------GAADI------DVNPRSNKMIIFAHHLKV 542
+L P++ +D G + ++ + +K++IF+ + +
Sbjct: 541 QLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQFVSM 600
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDFSSA 601
LD ++++ RIDG+ R+ + F + ++ + ++ A G+G++ ++A
Sbjct: 601 LDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINLTAA 660
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY-IFCAKDTTDESHWQNLNKSLRCVSS 660
+V+ + +P + LQA DRAHR GQT V +Y ++C + + +NK
Sbjct: 661 DSVIIFDSDWNPQVDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAVNKRKLEKLV 720
Query: 661 ATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEA---- 716
GK++ L+++A ++L+M+ S T Q A+ + +EL ++ S+E
Sbjct: 721 IQMGKFNTLKKLAFNEQTFLKMNG----SSLATTTKQSANKELVKELSQLLISNETNQGQ 776
Query: 717 SDFRAINTNDEITAKMNDK-LLEESKTDHSPTETDDHHNNVSQYTGRIHLYSCVPGTDS 774
+D I +D+I + K LL+ S + P ET +H I L+ G D+
Sbjct: 777 ADTSKIENSDDILEESEMKELLDRSPPAYIPHETQFNH---------IRLFETTTGFDN 826
>gi|166240364|ref|XP_638342.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
gi|165988561|gb|EAL64859.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
Length = 1604
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 221/483 (45%), Gaps = 80/483 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+Q+ G+ + + R ++ADEMGLGKT+Q IA + ++ LVV P
Sbjct: 627 YQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLSTIS 686
Query: 257 SWAEELERWLPFCLPADIHLVF--GHRNNPVHLTR-FPR----VVVISYTMLHRLRKSMI 309
+W E RW P +H++ G ++ R PR VV+ S+ + + RK++
Sbjct: 687 NWVSEFARWSP-----KLHVIVYKGKQDERRETARTIPRNAFCVVITSFEYIIKDRKTLG 741
Query: 310 EQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
W +I+DE H ++ SK + + + + + +LL+GTP + +++
Sbjct: 742 RVHWIYIIIDEGHRIKNKNSKLSVQLRQYHS--------RNRLLLTGTPLQNDLGELWAL 793
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG---VRLEELNVLLKQT---- 420
+N L P + A T Q + FQ K V EE +++ +
Sbjct: 794 LNFLLPTIFNSAD-----------TFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVL 842
Query: 421 --VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV--GVINDSEKDATNDKTPKD 476
++RRLK + QLP K+ ++I+ + +I ++ V GV+ P D
Sbjct: 843 RFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVL------------PID 890
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSG-------FREWLSIHPVIAESDGAADI----- 524
D + G RL + + + +L F++ I+ + + G D
Sbjct: 891 PDSKE--GRSGRLKMKGFNNI-VKQLQKICNHPYLFKDEWDINEDLIRTSGKFDTMDQIL 947
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-V 582
++ ++++IF +V++ ++E+ S K F+R+DG+T P +R V + +
Sbjct: 948 TKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPF 1007
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
I ++ AGG+G++ +A V+ + +P + LQA+DR HR GQT++V+++ + ++
Sbjct: 1008 WIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANS 1067
Query: 643 TDE 645
+E
Sbjct: 1068 IEE 1070
>gi|55771379|dbj|BAD72546.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
gi|55773904|dbj|BAD72509.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
Length = 1354
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 132/571 (23%), Positives = 243/571 (42%), Gaps = 117/571 (20%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISA-GSILVVCPAILRLS 257
P+QLEG+ R+ R ++ DEMGLGKT+Q+IA + + F+ G LVV P +
Sbjct: 282 PYQLEGLNFLRYSWYHNKRVILGDEMGLGKTIQSIAFLGSLFVDKLGPHLVVAPLSTLRN 341
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-------------------------- 291
W E W P ++ + FG + + ++
Sbjct: 342 WEREFATWAP---QMNVVMYFGSAASREIIRKYEFYYPKEKPKKLKKKKSSPSNEDKKQS 398
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAK 345
V++ SY M++ + +W +IVDE H ++ SK + +E
Sbjct: 399 RIKFDVLLTSYEMINMDSTVLKTIEWECMIVDEGHRLKNKDSKLFGQLKEYH-------- 450
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
K VLL+GTP + ++F ++ L G + D++ + F+D +
Sbjct: 451 TKHRVLLTGTPVQNNLDELFMLMHFLEGDSFG--------SIADLQ-------EEFKDIN 495
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIV 452
+ ++E+L+ +LK ++RR K+ ++ +LPPK+ I+R +L K E++
Sbjct: 496 QDKQVEKLHGMLKPH-LLRRFKKDVMKELPPKKELILRVELTSKQKEYYKAILTKNYEVL 554
Query: 453 SAKAA-----VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ ++ + V+ + K + + +E +S R + + SG E
Sbjct: 555 TRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALR---------RLLESSGKME 605
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
L V + G ++++I++ +LD +++++S + + RIDG
Sbjct: 606 LLDKMMVKLKEQG----------HRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGA 655
Query: 568 DRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+RQ + F N + ++ AGG+G++ ++A V+ + +P LQA RAHR
Sbjct: 656 ERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 715
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRC-------VSSATNGKYDALQEIAVEGVSY 679
GQTS V IY ++ T +E Q K + ++ TN + L +I G
Sbjct: 716 GQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKE 775
Query: 680 LEMSDKTDRGS-------EDLTLDQVASSDQ 703
L D+ D +D +D++ DQ
Sbjct: 776 L-FDDENDEAGKSCQIHYDDAAIDRLLDRDQ 805
>gi|412988921|emb|CCO15512.1| DNA repair and recombination protein RAD26 [Bathycoccus prasinos]
Length = 1189
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 207/477 (43%), Gaps = 72/477 (15%)
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCL 270
R GG +I DEMGLGKT+Q A + + +VVCPA + W EL+ W P
Sbjct: 394 RAGG--IIGDEMGLGKTVQVAAFLGALSKSNLYQASVVVCPATMLRQWRRELKIWAPELK 451
Query: 271 PADIH----------LVFGHRNNPV-----HLTRFPR-VVVISYTMLHRLRKSMIEQDWA 314
P +H + G+R N + + TR P+ +V+ +Y L +R+ ++ W
Sbjct: 452 PVVLHDSAITQDALKVANGNRKNAMKNAIRNATRDPKGLVITTYECLRGMREDLLTVRWG 511
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++DE H +R PE V+ + ++++G P +R +++ I+ ++PG
Sbjct: 512 YAVLDEGHKIR------NPEADITVVSKRLRTVHRIIMTGAPVQNRLSELWSLIDFVYPG 565
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLL 431
LG F + + GY Q + R V LK + ++RRLKQ L
Sbjct: 566 KLGTLPV-FQAQFAVPIQIGGYVNASDQAATTAYRCA---VALKDLISPYLLRRLKQDLD 621
Query: 432 VQLPPKRRQIIRLLLKRSE------IVSAKAAVGVINDSEKDATN--DKTPKDSDEHDDS 483
+ LP K Q++ + ++ +S++ +I D ++A D K + D
Sbjct: 622 INLPDKTEQVLFCPMTENQRDAYKGFLSSREVEDII-DGRREALGGIDVLRKIVNHPDLL 680
Query: 484 GACCRLGKISYQE-LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
R G +Y + + KL + LS+ + ++ ++F+ ++
Sbjct: 681 ERNSRAGDANYGDPVRSGKLQVALKILSMW--------------KSQGHRCLVFSQTQQM 726
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ--------------LSNEVKIAIIG 588
LD +++ ++ +G + R+DG T R V SF + V + ++
Sbjct: 727 LDILEQAVANEGYTYRRMDGTTPVAHRMGLVDSFNDAGNVGEEGVAAEDMQEPVFVFLLT 786
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+G++ + A V+ + +PS QA +RA R GQT AV IY T +E
Sbjct: 787 TKVGGLGINLTGANRVLLFDPDWNPSTDAQARERAWRIGQTKAVTIYRLITTGTIEE 843
>gi|396081145|gb|AFN82764.1| Mot1 helicase-like protein [Encephalitozoon romaleae SJ-2008]
Length = 1256
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 120/464 (25%), Positives = 205/464 (44%), Gaps = 69/464 (14%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAI--AACFISAGSILVVCPAILRLSW 258
+Q+EGV+ F ++AD+MGLGKTLQ + + + + ILV+CP+ L W
Sbjct: 800 YQMEGVKWLNFLHSFNLNGILADDMGLGKTLQVLTFLCSEIYKTNRKILVICPSSLTGHW 859
Query: 259 AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIV 318
E++++ P + A+I+ G ++ SY + IE+DW ++V
Sbjct: 860 KSEVKKFFPL-VAAEIYKREGKSKYSF--------LISSYETFRNDYLNFIEKDWFYVVV 910
Query: 319 DESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
DE H +R +K+T + + K R ++L+GTP + D+ N L P +G
Sbjct: 911 DEGHVLR-NKQTILYSRMNMI-----KCPRKIVLTGTPVHNSVEDLVSLFNFLMPNYIGS 964
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLLVQLPP 436
K ++ + + + Q E LN+L K+ + ++RRLK +L LPP
Sbjct: 965 EK-EYGSLNVKMSDTEIEKTQ-----------ERLNLLHKKVLPFVLRRLKIDVLKDLPP 1012
Query: 437 KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496
K IIR +G + + ++K K+ E D GK+ +
Sbjct: 1013 K---IIR---------DITVELGPVQEKLYREIDEKGGKEGPEDID----LEYGKVDQKN 1056
Query: 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS--------------NKMIIFAHHLKV 542
+G + +L++ I +++I R+ NKM+IF
Sbjct: 1057 VGFKRTKDL--FLAVSH-IGHFKSSSEISCKVRALEDIITLCGGEDLRNKMLIFFQFKSS 1113
Query: 543 LDGV-QEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+D V ++ +++ + R+DG+ R F + +I + GG+GL+ + A
Sbjct: 1114 IDLVIKDIMAKYKFKYSRLDGSVPSSARAKIAEDFN-TGTTQILFLTTQVGGLGLNLTGA 1172
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
VV E +P LQA DRAHR GQ VN++ AK+T +E
Sbjct: 1173 DTVVMYEHDWNPFNDLQAMDRAHRIGQKRTVNVFRLIAKNTLEE 1216
>gi|357132133|ref|XP_003567687.1| PREDICTED: probable chromatin-remodeling complex ATPase chain-like
[Brachypodium distachyon]
Length = 1099
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 131/563 (23%), Positives = 242/563 (42%), Gaps = 83/563 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 226 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFKGITGPHMVVAPKSTLG 285
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP---RVVVISYTMLHRLRKSMIEQDW 313
+W +E+ R+ P RN+ P V V S+ M + + ++ W
Sbjct: 286 NWMKEIARFCPILRAVKFLGNPEERNHIREKLLQPGKFDVCVTSFEMAIKEKTALKRFSW 345
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N L P
Sbjct: 346 RYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWSLLNFLLP 399
Query: 374 GLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
+ + A+T+ + + G Q ++ Q K +R ++RRLK +
Sbjct: 400 EI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLKSDVE 444
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
LPPK+ I+++ + + + +A + KD + + G RL
Sbjct: 445 KGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERKRLLN 489
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMIIFAHH 539
I+ Q + P D + + R ++++IF+
Sbjct: 490 IAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVENAGKMVLLDKLLPKLKDRDSRVLIFSQM 549
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDF 598
++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+G++
Sbjct: 550 TRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 609
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL--- 655
++A VV + +P LQA+DRAHR GQ V ++ FC + T +E + K L
Sbjct: 610 ATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 669
Query: 656 -------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDLTLDQVA 699
R + K D LQ + D T DR E++T + A
Sbjct: 670 ALVIQQGRLAEQKSVNKDDLLQMVRFGAEKVFSSKDSTITDEDIDRIIAKGEEITAELDA 729
Query: 700 SSDQFQE---LMKVPESSEASDF 719
+F E K+ +++E DF
Sbjct: 730 KMKKFTEDAIKFKMDDTAELYDF 752
>gi|282857036|ref|ZP_06266287.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
gi|282585197|gb|EFB90514.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
Length = 1419
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 128/464 (27%), Positives = 212/464 (45%), Gaps = 49/464 (10%)
Query: 194 PKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P++L + P+QLEG R+ R G CL AD+MGLGKT+Q +A+ G LV
Sbjct: 954 PRTLRAQLRPYQLEGFRWLARLAHWGAGACL-ADDMGLGKTVQTLALLLHRAEGGPALVA 1012
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P + +W EE R+ P D G L F VV+ SY +L +S
Sbjct: 1013 APTSVCGNWIEEAARFAPTLNVIDYRSA-GREKVLAALKPFD-VVLASYGLLQSDAESFA 1070
Query: 310 EQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++ W +++DE+ V+ +KR++ AV+ + + I ++GTP +R ++++
Sbjct: 1071 QKRWHTVVLDEAQAVKNMSTKRSA------AVMGLHGDFRMI--MTGTPIENRLSELWNL 1122
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTV--QGYQGQLFQDFS----KGVRLEELNVLLKQTV 421
L PGLLG + F + + G + +L + + + V+ + L+ L ++T
Sbjct: 1123 FRFLNPGLLGSLER-FNRRFASPVAAGDDGARSRLRRAIAPFLLRRVKEQVLDDLPERTE 1181
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
+ RR V+L P+ R L R V A A G N E+D + +
Sbjct: 1182 VTRR------VELSPQERAFYEAL--RQSAVEAIDAAG--NSPEED---KRFAVFAQLMK 1228
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
CC + +S S L + + ES ++ ++F+
Sbjct: 1229 LRRCCCAVSLVSDGVGAAIPSSKLEALLELVDELRES-----------GHRALVFSQFTD 1277
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
L ++ ++E+G+ + +DG+T P R V SFQ S +I + AGG GL+ + A
Sbjct: 1278 HLRLIERALAERGVPCLYLDGSTPPGKRAELVSSFQ-SGRGDCFLISLRAGGTGLNLTGA 1336
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
VV ++ +P++ QA DRA+R GQT V +Y F A T +E
Sbjct: 1337 DFVVHMDPWWNPAVEDQASDRAYRIGQTRPVTVYRFVAAHTVEE 1380
>gi|423336292|ref|ZP_17314040.1| putative SNF2 family DNA helicase [Lactobacillus reuteri ATCC 53608]
gi|337729492|emb|CCC04622.1| putative SNF2 family DNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 1161
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 123/484 (25%), Positives = 222/484 (45%), Gaps = 45/484 (9%)
Query: 192 KLPKSLLDVILPFQLEGVRFGL-----RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
K+P +L + P+Q +GV++ + GG L+ADEMGLGKTLQ I + G
Sbjct: 694 KVPANLHATLRPYQYDGVQWLITLMKYHFGG--LLADEMGLGKTLQIITVLLSEQGNGQN 751
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
L+V PA + +W +E+ ++ P + R + +++ SY R
Sbjct: 752 LIVAPAAVIYNWQDEINKFAPDLKVTVLDGSKAERRKQFAQSTGRDIIITSYDAAKRDID 811
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + ++DE+ +++ + +T+ + VKA+ K+ L+GTP +R +++
Sbjct: 812 FYEGHLFNIEVIDEAQYIK-NPQTAAAKTVKAI-----NAKQRFALTGTPIENRLSELWS 865
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
+ L PGLLG + F K Y + ++ Q D + L Q M+RRL
Sbjct: 866 IFDYLMPGLLGSYQ-QFRKQY-EGPIIKNQDEQAQDDLKR----------LVQPFMLRRL 913
Query: 427 KQHLLVQLPPKRRQIIR--LLLKRSEIVSAKAA---VGVINDSEKDATNDKTPKDSDEHD 481
KQ +L LP K Q+ ++ K+ + A+A + ++K+ +K ++
Sbjct: 914 KQDVLNDLPMKNEQVFLTPMVGKQERLYQARAQRLIRQIQKQNDKEFQQNKLAVLAEITR 973
Query: 482 DSGACCRLGKISYQELGIAKLSG-FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
CC + + G + SG + +++ D AD ++K+++F+
Sbjct: 974 LRELCCSPQLL---DRGYSGPSGKIKATMNLI-----KDEMAD------NHKILLFSQFT 1019
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
L ++E ++ GI + I+G T DR V F ++ + +I + AGG GL+ +S
Sbjct: 1020 SALAILKEKLANAGIKYFVIEGKTKKADRLQFVDEFNSYDQPAVFLISLKAGGTGLNLTS 1079
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A V+ + + + QA DRAHR GQ + V IY A++T +E + K +S
Sbjct: 1080 ADVVIHFDPWWNIAAENQATDRAHRIGQKNNVTIYKMIAQNTIEEKIIEMQQKKAALANS 1139
Query: 661 ATNG 664
+G
Sbjct: 1140 ILSG 1143
>gi|335996485|ref|ZP_08562402.1| Snf2 family helicase [Lactobacillus ruminis SPM0211]
gi|335351555|gb|EGM53046.1| Snf2 family helicase [Lactobacillus ruminis SPM0211]
Length = 1171
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 126/477 (26%), Positives = 217/477 (45%), Gaps = 65/477 (13%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACF-------IS 242
LP L + P+Q EG R+ L G ++ADEMGLGKTLQ I + +S
Sbjct: 700 LPSGLNAKLRPYQEEGYRWLASLANGNFGGILADEMGLGKTLQTITLLLAAKDDKISQVS 759
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
G L+V PA L +W +ELE + P I+ R++ + +V+ +Y L
Sbjct: 760 PGQALIVTPAALLYNWQKELENFAPTLKTLVINGTKKQRHDLLADVADYDIVLTTYDQLK 819
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R + +E ++ I+DE+ +++ S + KAV + AK + L+GTP +R
Sbjct: 820 RDFEDYLELEFEYEIIDEAQNIK----NSTTQASKAVKAIDAKTR--FALTGTPIENRLS 873
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+++ + + PG L + Y + + + ++ + D KG++ L+K V
Sbjct: 874 ELWSIFDYVMPGYLFR--------YNEFR--EQFERPIMIDEEKGMQ----KALIKMIVP 919
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS-AKAAVGVINDSEKDATNDKTPKDSDE 479
++RR K +L LP K ++R +K G+ + + + K +DE
Sbjct: 920 FVLRRKKSQVLKDLPEK--------IERPYYAEMSKKQAGLYQAMVNELRTELSQKSADE 971
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESDGAADIDVN---------P 528
S KI +AKL+ R+ + P V ++ DG +
Sbjct: 972 FKQS-------KIEI----LAKLTKIRQ-ICCDPSLVYSDYDGESGKTYTCMELIESALS 1019
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++I+F+ + +L +++ + ++ I F +I G T +R V F N+V I +I
Sbjct: 1020 GGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFN-QNDVPIFLIS 1078
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ A ++ + + + QA DRAHR GQT V +Y KDT +E
Sbjct: 1079 LKAGGTGLNLVGADVIIHYDPWWNEAAQNQATDRAHRIGQTKNVLVYKLIVKDTIEE 1135
>gi|332306037|ref|YP_004433888.1| SNF2-related protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332173366|gb|AEE22620.1| SNF2-related protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 1440
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 226/481 (46%), Gaps = 60/481 (12%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFIS 242
+ ++ +P + + +QL G + R G CL AD+MGLGKTLQA+AI +
Sbjct: 959 NALMPNIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRAN 1017
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-------HLTRFPRVVV 295
G LV+ P + +W +E ++ P +I VF N + L F V+
Sbjct: 1018 EGPSLVIAPTSVCFNWQQEALKFAP---TLNIK-VFADSTNTIAREVLLSELGPFD-CVI 1072
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
ISY +L R + + + W ++ DE+ ++ +KRT KA + + K I +
Sbjct: 1073 ISYGLLQRESEILKKVHWHSIVADEAQALKNPLAKRT------KAAYALKSDFKMIT--T 1124
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP +L+ + +F IN PGLLG K + ++ Q +D +
Sbjct: 1125 GTPIENNLTELWSLFRFIN---PGLLGNIKRFAQRFSLPIENAQ-------EDPLAARKA 1174
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEK 466
+ L Q ++RR+K +L +LP + IR+ + E +A A+ IN S +
Sbjct: 1175 SQALKTLIQPFILRRMKNQVLTELPSRTEINIRVEMSSQERDFYEALRLNAIDNINQSGQ 1234
Query: 467 --DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
+A+ + ++ ACC +L +A+ + I + A
Sbjct: 1235 HANASEQRIRMLAELVKLRQACCN------PKLVMAETT-------IPSAKLAALDALLE 1281
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
++ ++K +IF+ + L +++ + +KG + +DG+T + RQ++V++FQ + I
Sbjct: 1282 ELKLNNHKALIFSQFVGHLQLIKQHLEDKGFDYQYLDGSTPQKQRQASVNAFQ-RGQGDI 1340
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +
Sbjct: 1341 FLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLITQNTIE 1400
Query: 645 E 645
E
Sbjct: 1401 E 1401
>gi|37542684|gb|AAL47211.1| chromatin-remodeling factor CHD3 [Oryza sativa]
Length = 1360
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 132/571 (23%), Positives = 243/571 (42%), Gaps = 117/571 (20%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISA-GSILVVCPAILRLS 257
P+QLEG+ R+ R ++ DEMGLGKT+Q+IA + + F+ G LVV P +
Sbjct: 288 PYQLEGLNFLRYSWYHNKRVILGDEMGLGKTIQSIAFLGSLFVDKLGPHLVVAPLSTLRN 347
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-------------------------- 291
W E W P ++ + FG + + ++
Sbjct: 348 WEREFATWAP---QMNVVMYFGSAASREIIRKYEFYYPKEKPKKLKKKKSSPSNEDKKQS 404
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAK 345
V++ SY M++ + +W +IVDE H ++ SK + +E
Sbjct: 405 RIKFDVLLTSYEMINMDSTVLKTIEWECMIVDEGHRLKNKDSKLFGQLKEYH-------- 456
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
K VLL+GTP + ++F ++ L G + D++ + F+D +
Sbjct: 457 TKHRVLLTGTPVQNNLDELFMLMHFLEGDSFG--------SIADLQ-------EEFKDIN 501
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIV 452
+ ++E+L+ +LK ++RR K+ ++ +LPPK+ I+R +L K E++
Sbjct: 502 QDKQVEKLHGMLKPH-LLRRFKKDVMKELPPKKELILRVELTSKQKEYYKAILTKNYEVL 560
Query: 453 SAKAA-----VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ ++ + V+ + K + + +E +S R + + SG E
Sbjct: 561 TRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALR---------RLLESSGKME 611
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
L V + G ++++I++ +LD +++++S + + RIDG
Sbjct: 612 LLDKMMVKLKEQG----------HRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGA 661
Query: 568 DRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+RQ + F N + ++ AGG+G++ ++A V+ + +P LQA RAHR
Sbjct: 662 ERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRC-------VSSATNGKYDALQEIAVEGVSY 679
GQTS V IY ++ T +E Q K + ++ TN + L +I G
Sbjct: 722 GQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKE 781
Query: 680 LEMSDKTDRGS-------EDLTLDQVASSDQ 703
L D+ D +D +D++ DQ
Sbjct: 782 L-FDDENDEAGKSCQIHYDDAAIDRLLDRDQ 811
>gi|409050962|gb|EKM60438.1| hypothetical protein PHACADRAFT_179732 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1448
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 123/510 (24%), Positives = 218/510 (42%), Gaps = 85/510 (16%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E + + P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ A I
Sbjct: 563 IKEKVTRQPSLLIGGTLKDYQLKGLQWMVSLYNNKLNGILADEMGLGKTIQTISLVAFLI 622
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP------ 291
G LV+ P +W+ E +W P ++ NP
Sbjct: 623 EVKKQRGPYLVIVPLSTMTNWSGEFAKWAPGVR------AISYKGNPTQRRALQNEIRGG 676
Query: 292 --RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
+V++ +Y + + R + W +I+DE H ++ ++ ++ L +
Sbjct: 677 QFQVLLTTYEYIIKDRPVLSRMKWVHMIIDEGHRMKNTQ-----SKLSQTLTQHYHSRYR 731
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG-- 407
++L+GTP + +++ +N + P K + VK+ + F + G
Sbjct: 732 LILTGTPLQNNLPELWSLLNFVLP-----------KIFNSVKSFDEWFNTPFANSGTGDK 780
Query: 408 VRLEELNVLL--------KQTVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAKAA 457
+ L E LL + ++RRLK+ + +LP K ++I++ + +S++
Sbjct: 781 IELNEEEALLIIRRLHKVLRPFLLRRLKKDVESELPDKVEKVIKVKMSALQSQLYKQMKK 840
Query: 458 VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI-----------------SYQELGIA 500
+I D + D K S +L KI Y I
Sbjct: 841 YKMIADGK-----DNKGKPGGVKGLSNELMQLRKICQHPFLFESVEDNVNPSGYVNDLIF 895
Query: 501 KLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
+ SG E LS I P +D ++++IF KV+D +++F+ ++R
Sbjct: 896 RTSGKIELLSRILPKFFATD-----------HRVLIFFQMTKVMDIMEDFLKMMNWKYLR 944
Query: 560 IDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+DG T DR V F ++ K+ I+ AGG+GL+ SA VV + +P LQ
Sbjct: 945 LDGGTKTEDRAGHVALFNAEGSDYKVFILSTRAGGLGLNLQSADTVVIFDSDWNPHADLQ 1004
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
A+DRAHR GQT V I F + + +E+ +
Sbjct: 1005 AQDRAHRIGQTKVVRILRFITEKSVEEAMF 1034
>gi|406928627|gb|EKD64395.1| hypothetical protein ACD_51C00008G0002, partial [uncultured
bacterium]
Length = 703
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 122/490 (24%), Positives = 224/490 (45%), Gaps = 69/490 (14%)
Query: 184 EVVDEMIGK-------LPKSLLDVILPFQLEGVRFGLRRGGRC----LIADEMGLGKTLQ 232
EV ++M+G +PK ++ + P+Q EGV + L R R ++AD+MGLGKT+Q
Sbjct: 217 EVREQMLGNTKIEPTPIPKEIMASLRPYQEEGVHW-LERLRRMYLNGILADDMGLGKTVQ 275
Query: 233 AIAIAAC---FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289
AI L+VCP L +W EEL R+ + + R +
Sbjct: 276 AITAITQNKKMDKEAQALIVCPTSLLYNWKEELNRFNAELSTIVVDGIPSQRKRLLSQMG 335
Query: 290 FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
VV+ SYT+L + ++ + ++ I+DE+ H++ ++ T + VK + +
Sbjct: 336 EYDVVITSYTLLQKDIETYSQDSFSYAILDEAQHIK-NRGTRNAKSVKMI-----QAAHR 389
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYD-FAKTYCDVKTVQGYQGQLFQDFSKGV 408
++L+GTP + +++ ++ L PG L + YD F + Y V Q Q Q + + V
Sbjct: 390 LILTGTPIENSLDELWSLMDFLMPGFL--STYDRFVENYIRVSGEQ--QAQNIEYLRRKV 445
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
++RR+K +L LPP + L ++ K+ S +D
Sbjct: 446 ----------SPFILRRMKTDVLKDLPPVSELVYHCQLSDVQLELYKSYAA----SARDE 491
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI-----AESDGAAD 523
+D G Q +A L+ ++ + HP I AE+ +A
Sbjct: 492 LVKLVERD-------------GFDKVQIHVLATLTRLKQ-ICCHPAIFAKEKAEAGDSAK 537
Query: 524 IDVNPR--------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
D+ ++K +IF+ + ++L ++E ++GI F +DG+T ++R V
Sbjct: 538 YDMLLELLQTLVEGNHKTVIFSQYTRMLQIMREDFEQRGISFSYLDGST--KNRLEIVKE 595
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
F + ++ + ++ + AGG GL+ A V+ ++ +P++ QA DR +R GQ ++V+ Y
Sbjct: 596 FNTNLKIPVFLVSLKAGGTGLNLVGADTVIHYDMWWNPAVESQATDRVNRIGQKNSVSSY 655
Query: 636 IFCAKDTTDE 645
+T +E
Sbjct: 656 KLITLNTIEE 665
>gi|47216738|emb|CAG01012.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHHL +L E + E +G++RIDG+ +R VH FQ E ++A++ I A
Sbjct: 8 KFLVFAHHLTMLQACTEAVIEAKVGYIRIDGSVPSSERIQLVHKFQNDPETRVAVLSIQA 67
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
G GL F++A +VVF EL +P + QAEDRAHR GQTS++N++ AK T D W L
Sbjct: 68 AGQGLTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTSSINVHYLIAKGTFDTVMWSML 127
Query: 652 NKSLRCVSSATNGKYDALQEIAVEG 676
N+ + NGK + L+ A EG
Sbjct: 128 NRKETVTGTTLNGKKEYLK--AAEG 150
>gi|189209013|ref|XP_001940839.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976932|gb|EDU43558.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 893
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 145/584 (24%), Positives = 249/584 (42%), Gaps = 107/584 (18%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLP------KSLLDVIL----- 202
P ++ V+ + + SI R +P P L I K P K ++DV++
Sbjct: 196 PLLSNTVIPQRNPSIPQPRHDPHAPNAL--------IMKRPDSCPKGKQIVDVVVDPVLS 247
Query: 203 ----PFQLEGVRF------GLR-RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----- 246
Q +GV+F G+R G ++ADEMGLGKTLQ IA+ + I
Sbjct: 248 KHLREHQRDGVQFLYECVMGMRCEGEGAIMADEMGLGKTLQTIALLWTLMKQNPIHGASP 307
Query: 247 -----LVVCPAILRLSWAEELERWLP------FCLPAD----IHLVFGHRNNPVHLTRFP 291
L+VCPA L +W E ++WL + L A + G N
Sbjct: 308 VIKKALIVCPAGLVDNWKREFKKWLGNERIGVYVLDAKNKKIANFTMGKSYN-------- 359
Query: 292 RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRI 349
++++ Y ML ++ + ++I DE H ++ + KA+L + + +R
Sbjct: 360 -ILIVGYEMLRVYQEELKRGSGVDIVIADEGHRLKTANN-------KAMLAIQSLNTERR 411
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKG- 407
++LSGTP + + + I+ + PGLLG+ + F +T+ + ++ Q + D KG
Sbjct: 412 IILSGTPLQNDLGEFYTAIDFVNPGLLGQ-RAAFKRTF-EAPIIRSRQPDASESDLEKGE 469
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLK----RSEI 451
R +EL V L MIRR + L LPPK I+ R +L R +
Sbjct: 470 ARWKEL-VSLTSQFMIRRTAEVLSKYLPPKTEHIVFCRPTKGQAEAYRAVLDSPTFRLAM 528
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA---CCRLGKISYQELGIAKLSGFREW 508
S+ A+ +IN +K + K S ++DD+ + L I L + S
Sbjct: 529 GSSDIALQLINVLKKICNSPSLLKSSKDNDDTPSEMLQSILPLIPNNILNSSASSAKLRL 588
Query: 509 LS--IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
L +H + ++ K++I +++ LD ++ + ++R+DG+T
Sbjct: 589 LDSLVHRIYTTTE-----------EKIVIVSNYTTTLDMIERLLVSLSYTYLRLDGSTPA 637
Query: 567 RDRQSAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624
RQ+ V F + + ++ +GGVGL+ A +V ++ +P+ LQA R H
Sbjct: 638 SKRQALVEKFNKTPKTTSFAFLLSAKSGGVGLNLIGASRIVLFDIDWNPATDLQAMARIH 697
Query: 625 RRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
R GQ +Y F + DE +Q + ++ + K A
Sbjct: 698 RDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVDNKASA 741
>gi|432103391|gb|ELK30496.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Myotis davidii]
Length = 387
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 134/269 (49%), Gaps = 38/269 (14%)
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
VM+RRLK +L QLP K+R+++ + R +SAKA A+ D K+
Sbjct: 66 AVMLRRLKSDVLSQLPAKQRKMVVVAPGR---ISAKAR----------ASLDAAAKEMTT 112
Query: 480 HDDSGACCRLGKI-SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
D+S R I + AK+ E++ D+ + R K ++FAH
Sbjct: 113 KDNSKGQQREALILFFHRTAEAKIPCVIEYI------------LDLLESGR-EKFLVFAH 159
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
H VLD + + + K + +RIDG T DR+ FQLS +A++ ITA +GL F
Sbjct: 160 HKVVLDAITKELERKKVQHIRIDGATSSADREQLCQQFQLSERHAVAVLSITAANMGLTF 219
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658
SSA VVF EL +P +++QAEDR HR GQ+++V I+ A+ T D+ W + + ++
Sbjct: 220 SSADLVVFAELFWNPGVLMQAEDRVHRIGQSNSVGIHYLVARGTADDYLWPLIQEKIKV- 278
Query: 659 SSATNGKYDALQEIAVEGVSYLEMSDKTD 687
L E V ++ EM++ TD
Sbjct: 279 ----------LGEAGVSEANFSEMTEATD 297
>gi|157128256|ref|XP_001661368.1| hypothetical protein AaeL_AAEL002341 [Aedes aegypti]
gi|108882255|gb|EAT46480.1| AAEL002341-PA [Aedes aegypti]
Length = 851
Score = 122 bits (307), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 222/506 (43%), Gaps = 80/506 (15%)
Query: 193 LPKSLLDVILPFQLEGVRF------GLR-----RGGRCLIADEMGLGKTLQAIAIAACFI 241
+P +L + P Q EGV F G R R G ++ADEMGLGKTLQ I++ +
Sbjct: 237 VPYALSKHLRPHQREGVSFLYECVLGFRYTDADRFG-AILADEMGLGKTLQCISLIYTLM 295
Query: 242 SAGS--------ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-LTRFPR 292
G IL+V P+ L +W E+ +WL +F +P + L ++ +
Sbjct: 296 KQGPYSQPILKRILIVTPSSLMENWDREISKWL------KTERIFTFIVSPTNPLKKYAQ 349
Query: 293 -----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK-RTSEPEEVKAVLDVAAKV 346
+++ISY +L + + + + L+I DE H ++ S +TS ++LD A +
Sbjct: 350 SAHIPILIISYELLSKQIRELDSVKFDLMICDEGHRLKNSAIKTS------SILD-AVEC 402
Query: 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406
R +LL+GTP + + + I + PGLLG Y KT + +Q Q + F+
Sbjct: 403 PRRILLTGTPIQNDLQEFYSLITFVNPGLLG--TYSEFKTKFENPILQSQQPGVLPMFAN 460
Query: 407 --GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS 464
RLEELN + + ++RR ++ + LP K+ +I + + + A+ S
Sbjct: 461 LGKARLEELNS-ITSSFILRRTQEVINKYLPGKQEAVIFCHPSKLQETLLRTAIQFYEKS 519
Query: 465 E-------------KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL--SGFREWL 509
+ K N + S E D G + KL W
Sbjct: 520 DRSTYFPLQLITVLKKICNHPSLIASTEKIDVGG------------SLIKLLNDNLPPWQ 567
Query: 510 SIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564
+ P +S A +D + R K +I +++ K LD + + R+DG+T
Sbjct: 568 DMGP--TDSGKLAVLDSLLETLIQRQEKAVIVSYYGKTLDMIMGLCEHYNYKYCRLDGST 625
Query: 565 LPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
+DR V SF S++ I ++ AGG+GL+ + A ++ + +P+ LQA R
Sbjct: 626 PSQDRCKIVSSFNSPSSDTFIFLLSAKAGGIGLNLTGASRLILYDNDWNPASDLQAMSRI 685
Query: 624 HRRGQTSAVNIYIFCAKDTTDESHWQ 649
R GQT V IY + +E +Q
Sbjct: 686 WRDGQTRNVFIYRLITAFSIEEKIYQ 711
>gi|170592228|ref|XP_001900871.1| CHD4 protein [Brugia malayi]
gi|158591738|gb|EDP30342.1| CHD4 protein, putative [Brugia malayi]
Length = 1846
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 126/498 (25%), Positives = 224/498 (44%), Gaps = 100/498 (20%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ R +G ++ADEMGLGKT+Q++ + + G LV P +
Sbjct: 625 YQLEGINWLRHCWSQGTDAILADEMGLGKTIQSMVFLYSLVKEGHTRGPFLVAAPLSTLI 684
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRF--------PR---------- 292
+W E E W P D ++V G +++ H F P+
Sbjct: 685 NWEREAEFWCP-----DFYVVTYVGDKDSRTVIREHEFSFIEGAVRGGPKPSRLKTDQGI 739
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY +++ + + +WA L+VDE+H ++ ++ + + D ++
Sbjct: 740 KFHVLLTSYELINIDKSILSSIEWAGLVVDEAHRLKNNQSLF----FRTLRDF--RINYR 793
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH +N L P YD D T + F + SK +
Sbjct: 794 LLLTGTPLQNNLEELFHLLNFLSPDRF----YDM-----DSFTHE------FAEISKEDQ 838
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKA 456
+++L+ LL M+RRLK +L +P K I+R +L + E +S K
Sbjct: 839 IQKLHSLLGPH-MLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNILTRNFEALSPKG 897
Query: 457 A------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSG-FREW 508
+ +I D +K + PK S E +L Y+ + K SG F
Sbjct: 898 GGSQISLINIIMDLKKCCNHPYLFPKASIE------APKLKSGIYEGTALVKASGKFVLL 951
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + E + ++++IF+ K+LD +++F +G + RIDG+ +
Sbjct: 952 QKMLKKLKE-----------QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQA 1000
Query: 569 RQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
RQ A+ F +N + + ++ AGG+G++ ++A V+ + +P +QA RAHR G
Sbjct: 1001 RQDAIDRFNAANAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1060
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V IY F +++ +E
Sbjct: 1061 QQKKVLIYRFVTRNSVEE 1078
>gi|312077956|ref|XP_003141528.1| CHromoDomain protein family member [Loa loa]
Length = 1696
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 126/498 (25%), Positives = 224/498 (44%), Gaps = 100/498 (20%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ R +G ++ADEMGLGKT+Q++ + + G LV P +
Sbjct: 480 YQLEGINWLRHCWSQGTDAILADEMGLGKTIQSMVFLYSLVKEGHTRGPFLVAAPLSTLI 539
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRF--------PR---------- 292
+W E E W P D ++V G +++ H F P+
Sbjct: 540 NWEREAEFWCP-----DFYVVTYVGDKDSRTVIREHEFSFIEGAVRGGPKPSRLKTDQGI 594
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY +++ + + +WA L+VDE+H ++ ++ + + D ++
Sbjct: 595 KFHVLLTSYELINIDKSILSSIEWAGLVVDEAHRLKNNQSLF----FRTLRDF--RINYR 648
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH +N L P YD D T + F + SK +
Sbjct: 649 LLLTGTPLQNNLEELFHLLNFLSPDRF----YDM-----DSFTHE------FAEISKEDQ 693
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKA 456
+++L+ LL M+RRLK +L +P K I+R +L + E +S K
Sbjct: 694 IQKLHSLLGPH-MLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNILTRNFEALSPKG 752
Query: 457 A------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSG-FREW 508
+ +I D +K + PK S E +L Y+ + K SG F
Sbjct: 753 GGSQISLINIIMDLKKCCNHPYLFPKASIE------APKLKNGIYEGTALVKASGKFVLL 806
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + E + ++++IF+ K+LD +++F +G + RIDG+ +
Sbjct: 807 QKMLKKLKE-----------QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQA 855
Query: 569 RQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
RQ A+ F +N + + ++ AGG+G++ ++A V+ + +P +QA RAHR G
Sbjct: 856 RQDAIDRFNAANAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 915
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V IY F +++ +E
Sbjct: 916 QQKKVLIYRFVTRNSVEE 933
>gi|71279360|ref|YP_270079.1| Snf2 family protein [Colwellia psychrerythraea 34H]
gi|71145100|gb|AAZ25573.1| Snf2 family protein [Colwellia psychrerythraea 34H]
Length = 1134
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/453 (26%), Positives = 216/453 (47%), Gaps = 70/453 (15%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILRLSWAEELERWLPFCLPADI- 274
++AD+MGLGKT+Q +A G IL+V P + +WA E++++ P L +
Sbjct: 684 ILADDMGLGKTIQTLAHLLIEKQQGRLTKPILIVAPTSVIFNWANEIDKFTP-QLSYQVL 742
Query: 275 -----HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
H FG + +++ SY ++ + ++ + L++DE+H+++ +K
Sbjct: 743 HGNKRHEQFGCLEGVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKT 802
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
+ +A L + A+ K + L+GTP + + + Q N L PG LG + F K +
Sbjct: 803 ----KLYQAFLTLKAQHK--LCLTGTPMENHLGEFWAQFNFLLPGFLGGQR-QFTKLF-- 853
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR--QIIRLLLK 447
+T G+L R + LN +K ++ RR K + +LPPK Q +R+ K
Sbjct: 854 -RTPIEKHGEL-------ERKQLLNQRIKPFIL-RRTKDKIATELPPKTEIIQTLRIEGK 904
Query: 448 RSEIVSAKAAVGVINDSE-KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506
++E+ + V + DS KD DK K S + + A +L ++
Sbjct: 905 QAELYES---VRLAMDSRLKDIIADKGLKRS-QIEVLDALLKLRQVCN------------ 948
Query: 507 EWLSIHPVIAESDGAADIDVNPR--------------SNKMIIFAHHLKVLDGVQEFISE 552
HP + + +GA ++ + + K++IF+ +L +++ + +
Sbjct: 949 -----HPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELID 1003
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
GIG+V++ G+T RQ V FQ EV + +I + AGGVGL+ ++A V+ + +
Sbjct: 1004 AGIGYVKLTGST--TKRQEVVDKFQ-RGEVPVFLISLRAGGVGLNLTAADTVIHFDPWWN 1060
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P++ QA DRA+R GQ V +Y +++ +E
Sbjct: 1061 PAVENQATDRAYRIGQNKPVFVYKLIIENSIEE 1093
>gi|409402415|ref|ZP_11251977.1| hypothetical protein MXAZACID_13341 [Acidocella sp. MX-AZ02]
gi|409128996|gb|EKM98869.1| hypothetical protein MXAZACID_13341 [Acidocella sp. MX-AZ02]
Length = 728
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 132/475 (27%), Positives = 216/475 (45%), Gaps = 62/475 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISAGSI-- 246
++P++ + P+Q GV + G L +AD+MGLGKT Q IA + G +
Sbjct: 248 EVPEAFKGSLRPYQQHGVDWLQHLAGHGLGAFLADDMGLGKTAQTIAHICVEHAEGRLTA 307
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L+V P L +W EL ++ P +H + R+ VVV +YT+L R
Sbjct: 308 PALIVVPTSLVANWTAELRKFAPHLRVEVLHGM--ERHEKRDKLEDVNVVVTTYTVLTRD 365
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ M W L ++DE+ ++ + E +AV + A+ K + LSGTP + ++
Sbjct: 366 IEFMKPLPWHLTVLDEAQAIK----SPEARATRAVCQLKAENK--ICLSGTPIENNLDEL 419
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQG---YQGQLFQDFSKGVRLEELNVLLKQTV 421
+ Q L PGLLG + F K + G +GQL Q
Sbjct: 420 WSQFAFLMPGLLGD-RRGFTKRFRTPIEKNGDPVVRGQLISRI--------------QPF 464
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR K + +LPPK + R+ L + + G + ++ K+ ++T S
Sbjct: 465 ILRRTKSEVATELPPKHTILRRITLAPDQRELYETIRGTLYETVKEQMAERTLAQSRVIV 524
Query: 482 DSG------ACC-----RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
ACC +LG E AKL E +S ++ P
Sbjct: 525 LDALLKLRQACCDPRLVKLGATRGTE-SSAKLDDLMEMVS--------------ELIPEG 569
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
++++F+ +LD ++ + E GI FV + G+T RDR + V F+ + EV + +I +
Sbjct: 570 RRILVFSQFTSMLDLIKPRLDEAGIPFVELRGDT--RDRATPVQRFE-AGEVPLFLISLK 626
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ +SA V+ + +P++ QA DRAHR GQT +V +Y A +T +E
Sbjct: 627 AGGRGLNLTSADTVIHYDPWWNPAIEAQASDRAHRIGQTKSVFVYKLIATETVEE 681
>gi|308497648|ref|XP_003111011.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
gi|308242891|gb|EFO86843.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
Length = 966
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 130/546 (23%), Positives = 239/546 (43%), Gaps = 106/546 (19%)
Query: 204 FQLEGVRFGLRRGGR---CLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLS 257
+QL GV++ + + ++ DEMGLGKT+Q +A + G L+V P+ +
Sbjct: 396 YQLVGVKWLIMMNNKELNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIEN 455
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-------VVVISYTML-HRLRKSMI 309
W E +W C + +G ++ HL + V++ +Y M+ +
Sbjct: 456 WIGEFHKW---CPSLKLLTYYGTQDERKHLRHRVKKQKDNIDVILTTYNMVTSKSDDKKF 512
Query: 310 EQDWAL--LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
++++L +I DE H ++ + + K ++ V K KR +LL+GTP + ++
Sbjct: 513 FKNFSLNYVIYDEGHMLK----NCDSDRYKGLMKV--KGKRKILLTGTPLQN---NLIEL 563
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKT--VQGYQ--GQLFQDFSKGV----RLEELNVLLKQ 419
I++++ L + YC+ T +Q ++ G + K + R+EE +L Q
Sbjct: 564 ISLMYFVL-----FKVFNKYCEDITHLLQHFKQLGPALESKDKALYQQDRIEEAKSIL-Q 617
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++RRLK +L LP K QII + +K+ + V V+ E+
Sbjct: 618 PYILRRLKNQVLSSLPTKSEQIIEVEMKKPQKQLYDDIVNVLQRPEEAG----------- 666
Query: 480 HDDSGACCRLGKISYQEL------------GIAKLSGFRE----------------WLS- 510
D G+ RL + + L IAKL RE WLS
Sbjct: 667 -DSYGSLMRLRQAANHPLLRRSEYTDAKLDKIAKLLCLREKAYADKKWQHVSEDLAWLSD 725
Query: 511 --IHPV---------------IAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQ 547
IH + +A G + ++ + +K++IF+ +LD ++
Sbjct: 726 IKIHQLCEKFRCTSKFLLNEELALKSGKCEQLDKMLPEIQKKGDKVLIFSQFTSMLDILE 785
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+++ +G + R+DG T DRQ ++ F +S ++ + ++ AGG+G++ +SA +++
Sbjct: 786 VYLNIRGYSYKRLDGQTPVLDRQEMINEFNISKDLFVFLLSTKAGGLGINLTSANHIIIH 845
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
++ +P QAEDR HR GQ +V++ +K T + K L+ T+G
Sbjct: 846 DIDFNPYNDKQAEDRCHRMGQEKSVHVTRLVSKCTVEIGMLALAKKKLQLEKQVTDGVKG 905
Query: 668 ALQEIA 673
L E A
Sbjct: 906 QLDEDA 911
>gi|357447407|ref|XP_003593979.1| Chromatin remodeling complex subunit [Medicago truncatula]
gi|355483027|gb|AES64230.1| Chromatin remodeling complex subunit [Medicago truncatula]
Length = 1066
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 218/483 (45%), Gaps = 73/483 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 194 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLG 253
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F V V S+ M + + ++
Sbjct: 254 NWMNEIRRFCPILRAVKF---LGNPEERRHIREDLLVAGKFD-VCVTSFEMAIKEKSTLR 309
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N
Sbjct: 310 RFSWRYIIIDEAHRIK-----NENSLLSKTMRIYNTNYRL-LITGTPLQNNLHELWSLLN 363
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 364 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 408
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 409 SDVEKGLPPKKETILKVGMSQLQKQYYKALL---------------QKDLEVVNAGGERK 453
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G S ++ + R +++
Sbjct: 454 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLD--KLLPKLKERDSRV 511
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AG
Sbjct: 512 LIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAG 571
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E +
Sbjct: 572 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAY 631
Query: 653 KSL 655
K L
Sbjct: 632 KKL 634
>gi|268574810|ref|XP_002642384.1| Hypothetical protein CBG18388 [Caenorhabditis briggsae]
Length = 1016
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 239/542 (44%), Gaps = 103/542 (19%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLSWAEELERWLPFCLPADIH 275
++ DEMGLGKT+Q +A + G L+V P+ +W E +W C +
Sbjct: 453 AILGDEMGLGKTIQIVAFLSYLKQTGKHGPHLIVVPSSTIENWIGEFHKW---CPSIKLL 509
Query: 276 LVFGHRNNPVHLTRFPR-------VVVISYTML-HRLRKSMIEQDWAL--LIVDESHHVR 325
+G ++ HL + V++ +Y M+ + ++++L +I DE H ++
Sbjct: 510 TYYGTQDERKHLRHRVKKQKDNIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLK 569
Query: 326 CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAK 385
+ + K ++ V K KR +LL+GTP + ++ I++++ L +
Sbjct: 570 ----NCDSDRYKGLMKV--KGKRKILLTGTPLQN---NLIELISLMYFVL-----FKVFN 615
Query: 386 TYCDVKT--VQGYQ--GQLFQDFSKGV----RLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
YC+ T +Q ++ G + K + R+EE +L Q ++RRLK +L LP K
Sbjct: 616 KYCEDITHLLQHFKQLGPALESKDKAMYQQDRIEEAKSIL-QPYILRRLKNQVLTSLPTK 674
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG------- 490
QII + +K+++ V V+ SE+ D G+ RL
Sbjct: 675 SEQIIEVDMKKTQKQLYDDIVDVLQRSEESG------------DSYGSLMRLRQAANHPL 722
Query: 491 --KISYQELGIAKLSG---FRE----------------WLS---IHPV------------ 514
++ Y E + K++ RE WLS IH +
Sbjct: 723 LRRLEYTEQKLDKIAKQLCLREKSYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLL 782
Query: 515 ---IAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565
+A + G + ++ + +K++IF+ +LD ++ +++ +G + R+DG T
Sbjct: 783 NEELALNSGKCEQLDKMLPEIQNKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTP 842
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
DRQ ++ F LS ++ + ++ AGG+G++ +SA +++ ++ +P QAEDR HR
Sbjct: 843 VLDRQEMINEFNLSKDLFVFLLSTKAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHR 902
Query: 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685
GQ V++ +K T + K L+ T+G L E A+ + E DK
Sbjct: 903 MGQEKPVHVTRLVSKCTVEIGMLALAKKKLQLEKQVTDGVKGQLDEDALRELREEEGGDK 962
Query: 686 TD 687
+
Sbjct: 963 IE 964
>gi|269216031|ref|ZP_06159885.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
gi|269130290|gb|EEZ61368.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
Length = 1078
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 218/488 (44%), Gaps = 73/488 (14%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAA 238
+ +DE ++P L + P+Q G R+ L GG ++ADEMGLGKTLQ I
Sbjct: 600 KTIDEDAYRVPVGLAATLRPYQEAGFRWMSHLIDLGFGG--ILADEMGLGKTLQLI---- 653
Query: 239 CFISA--------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
C + A G LVVCPA L +WA E ER+ P + +V G + R
Sbjct: 654 CLLLARRDEARTTGPSLVVCPASLVYNWAAEFERFAP---DLRVAVVAGDADARAEARRR 710
Query: 291 PR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V + SY +L R + + +DE+ +V+ + T VKA+ D A ++
Sbjct: 711 ADADVFITSYDLLKRDIEDYAGMRFWCEALDEAQYVK-NHETQAAASVKAI-DAAHRIA- 767
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
L+GTP +R +++ + L PGLLG Y + + + G D
Sbjct: 768 ---LTGTPIENRVSEVWSIFDYLMPGLLGS--YTRFRDRFETPIMGG-------DEEAAA 815
Query: 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA 468
RL L ++RR K +L LP K ++ L+ + + + +
Sbjct: 816 RLSAL----VGPFILRRRKADVLTDLPEKWESVVYARLEGEQ--------RALYQAHEQL 863
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD----GAADI 524
K + +E DD + + +A+L+ R+ +++ P + +D GA +
Sbjct: 864 LRTKIAHEGEEGDDGRSKVEI---------LAELTRLRQ-IALDPSLLYADYRGGGAKEQ 913
Query: 525 DVN-------PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
+ K+++F+ LD + +SE+G+ I G+T + R + V +F
Sbjct: 914 AIMDTIASCIASGEKVLVFSQFTSYLDIIGAKLSEQGVKHYVITGSTPKKKRLALVDAFN 973
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+++ + +I + AGG GL+ + A V+ + + + QA DRAHR GQT VN+Y
Sbjct: 974 -ADDTPVFLISLKAGGTGLNLTGASVVLHADPWWNAAAQNQATDRAHRMGQTRIVNVYRV 1032
Query: 638 CAKDTTDE 645
AKDT +E
Sbjct: 1033 IAKDTIEE 1040
>gi|218197711|gb|EEC80138.1| hypothetical protein OsI_21929 [Oryza sativa Indica Group]
gi|222635083|gb|EEE65215.1| hypothetical protein OsJ_20361 [Oryza sativa Japonica Group]
Length = 1309
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 132/571 (23%), Positives = 243/571 (42%), Gaps = 117/571 (20%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISA-GSILVVCPAILRLS 257
P+QLEG+ R+ R ++ DEMGLGKT+Q+IA + + F+ G LVV P +
Sbjct: 237 PYQLEGLNFLRYSWYHNKRVILGDEMGLGKTIQSIAFLGSLFVDKLGPHLVVAPLSTLRN 296
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-------------------------- 291
W E W P ++ + FG + + ++
Sbjct: 297 WEREFATWAP---QMNVVMYFGSAASREIIRKYEFYYPKEKPKKLKKKKSSPSNEDKKQS 353
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAK 345
V++ SY M++ + +W +IVDE H ++ SK + +E
Sbjct: 354 RIKFDVLLTSYEMINMDSTVLKTIEWECMIVDEGHRLKNKDSKLFGQLKEYH-------- 405
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
K VLL+GTP + ++F ++ L G + D++ + F+D +
Sbjct: 406 TKHRVLLTGTPVQNNLDELFMLMHFLEGDSFG--------SIADLQ-------EEFKDIN 450
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIV 452
+ ++E+L+ +LK ++RR K+ ++ +LPPK+ I+R +L K E++
Sbjct: 451 QDKQVEKLHGMLKPH-LLRRFKKDVMKELPPKKELILRVELTSKQKEYYKAILTKNYEVL 509
Query: 453 SAKAA-----VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ ++ + V+ + K + + +E +S R + + SG E
Sbjct: 510 TRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALR---------RLLESSGKME 560
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
L V + G ++++I++ +LD +++++S + + RIDG
Sbjct: 561 LLDKMMVKLKEQG----------HRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGA 610
Query: 568 DRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+RQ + F N + ++ AGG+G++ ++A V+ + +P LQA RAHR
Sbjct: 611 ERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 670
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRC-------VSSATNGKYDALQEIAVEGVSY 679
GQTS V IY ++ T +E Q K + ++ TN + L +I G
Sbjct: 671 GQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKE 730
Query: 680 LEMSDKTDRGS-------EDLTLDQVASSDQ 703
L D+ D +D +D++ DQ
Sbjct: 731 L-FDDENDEAGKSCQIHYDDAAIDRLLDRDQ 760
>gi|313231904|emb|CBY09016.1| unnamed protein product [Oikopleura dioica]
Length = 1677
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/550 (23%), Positives = 240/550 (43%), Gaps = 84/550 (15%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLS 257
+Q+EGV F + C++ADEMGLGKT+Q+I G L+V P +
Sbjct: 376 YQVEGVSWLLFNWYQKRNCILADEMGLGKTIQSITFIQKICETNHRGPFLIVVPLSTVGN 435
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTR--------FPR-------VVVISYTMLH 302
W E E W L A ++ +H +P+ ++ +Y M+
Sbjct: 436 WIREFETWTD--LNAIVYHGSAQSRQMIHQYELYQRDKKGYPKRGDFRFDALITTYEMIV 493
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ +W L+I+DE+H ++ +K + E +K + ++ VLL+GTP +
Sbjct: 494 ADIPEIRNVNWQLMIIDEAHRLKNTK-SKLAENLKNM-----HIEHKVLLTGTPLQNNIE 547
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ +N + P YD GY + + + +E++ +LK +M
Sbjct: 548 ELYALLNFMNPTDF----YDI-----------GYFMREYGILTNKEHVEKMQNVLK-PIM 591
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHD 481
+RRLK+ + L PK II + L + +A + D K A+ P +
Sbjct: 592 LRRLKEDVEKSLAPKEETIIEVELTNIQKKYYRAILERNFDFLSKGASTGNVPSLMNTMM 651
Query: 482 DSGACCR------------------LGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+ CC G+++ I + SG + + IH ++ +
Sbjct: 652 ELRKCCNHPFLIKGAEDKIIDEYRAKGEVADPLTSIVQASG--KMVLIHKLLPKLKAGG- 708
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+K++IF+ ++VLD +++++ + +GF R+DG DRQ+A+ F + +
Sbjct: 709 -------HKVLIFSQMIRVLDILEDYLYQMSMGFERLDGRIRGNDRQAAIDRFCKPDSDR 761
Query: 584 IAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ T AGG+G++ ++A V+ + +P LQA+ R HR GQ V IY T
Sbjct: 762 FVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKEVKIYRLLTSKT 821
Query: 643 TDESHWQ------NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
+ + L++++ S T+GK DA ++ +S E+ D +G+ +D
Sbjct: 822 YEREMFDRASLKLGLDRAVLQSMSGTSGK-DAGGPMS--SLSKKEVEDLLKKGAYGALMD 878
Query: 697 QVASSDQFQE 706
++++F E
Sbjct: 879 DDDAAEKFCE 888
>gi|302345308|ref|YP_003813661.1| SNF2 family N-terminal domain protein, partial [Prevotella
melaninogenica ATCC 25845]
gi|302150135|gb|ADK96397.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
25845]
Length = 1343
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 229/467 (49%), Gaps = 58/467 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + R G CL AD+MGLGKT+Q I + G+ L+
Sbjct: 882 VPKTLQAQLRDYQQEGFEWMSRTTSWGAGVCL-ADDMGLGKTIQTITLLLEQSENGASLI 940
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL+R+ P L I R+ + + V++ +Y +L+ + +
Sbjct: 941 VAPASVVPNWRNELQRFAP-TLNLTILNQSEDRSKDIKEAKAGDVIITTYGLLNIQQDDL 999
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
++W ++ +DE+H ++ + + KA + + A+ K V+L+GTP L+ +++F
Sbjct: 1000 TGREWNVVCLDEAHTIK----NANTKMSKAAMLLKAQHK--VILTGTPIQNHLAELWNLF 1053
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F K + + ++G D K R +L L+ ++RR
Sbjct: 1054 QFIN---PGLLGSAE-QFRKKF--ILPIEG-------DNDKA-RQSQLRRLI-SPFLLRR 1098
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT--NDKTPKDSD----E 479
K ++ +LP K I+L + E+ S + A+ + E +A +K K S
Sbjct: 1099 TKAEVIDELPAKNE--IKLPV---ELSSEEMAMYEVKRRETEAKILENKADKVSTLAELT 1153
Query: 480 HDDSGAC-CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
H AC C L ++ L +K+ F + +AES +N N+ ++F+
Sbjct: 1154 HLRQMACSCSLVDKKWK-LPSSKVLAFID-------LAES-------LNDSDNRALVFSQ 1198
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ V++ + + + ++ +DG+T R+ V FQ + + +I + AGG+GL+
Sbjct: 1199 FTSFFEEVRKAMDKAKLPYLYLDGSTSMAMREKLVKEFQ-TGKCPFFLISLKAGGLGLNL 1257
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A VV L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1258 TGANYVVHLDPWWNPAIEQQATDRAYRIGQQQDVTVYHLISQHTIEE 1304
>gi|413958877|ref|ZP_11398116.1| SNF2-like protein [Burkholderia sp. SJ98]
gi|413941457|gb|EKS73417.1| SNF2-like protein [Burkholderia sp. SJ98]
Length = 1104
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 125/510 (24%), Positives = 231/510 (45%), Gaps = 66/510 (12%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P+ L + +Q EGV +F ++AD+MGLGKT+Q +A AG +
Sbjct: 631 PRGLQATLRDYQREGVDWMQFLREHDIAGVLADDMGLGKTIQTLAHILVEKEAGRLTSPA 690
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTML 301
L+V P L +W +E R++P D+H P+ RF + VV +Y ++
Sbjct: 691 LIVVPTTLVNNWIDEARRFVPSLKVLDLH-------GPLRHERFTEIARHDLVVTTYALV 743
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
R +++ + D+ LLI+DE+H+V + + + V + A+ + + L+GTP +
Sbjct: 744 WRDHEALSQHDYHLLILDEAHYV----KNASSKAAGVVRTLGARHR--LCLTGTPLENHL 797
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD-FSKGVRLEELNVLLKQT 420
+++ Q + L PG LG +K +FA + K ++ + +D ++ +R
Sbjct: 798 GELWSQFDFLLPGFLG-SKKEFASRWR--KPIEKQNDAMRRDLLARRIR----------P 844
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
M+RR K + +LPPK + + L+ ++ + + +DA + + S
Sbjct: 845 FMLRRRKDEVATELPPKTMIVRSVELEDAQRDLYETVRAAMQKKVRDAISKQGFARSHIV 904
Query: 481 DDSG------ACC--RLGKI--SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
CC L K+ + + G AKL+ E L P + E
Sbjct: 905 MLDALLKLRQVCCDPSLVKLPGAPKTAGSAKLALLLEML---PALIEE-----------G 950
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
++++F+ +L + + E G+ +V + G+T DR++ V FQ E + +I +
Sbjct: 951 RRVLVFSQFTGMLAIIAAALDEAGLAYVTLTGDTA--DRKTPVQRFQ-KGEAPVFLISLK 1007
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGGVGL+ ++A V+ + +P+ QA DRAHR GQ V +Y A + +E +
Sbjct: 1008 AGGVGLNLTAADTVIHYDPWWNPAAENQATDRAHRIGQEKPVFVYKLVAAGSIEEKILEM 1067
Query: 651 LNKSLRCVSSATNGKYDALQEIAVEGVSYL 680
+ + + A+++ + E + L
Sbjct: 1068 QGRKAALAAGILSEDARAVEKFSAEDIEAL 1097
>gi|410645195|ref|ZP_11355663.1| helicase [Glaciecola agarilytica NO2]
gi|410135428|dbj|GAC04062.1| helicase [Glaciecola agarilytica NO2]
Length = 1434
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/481 (26%), Positives = 225/481 (46%), Gaps = 60/481 (12%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFIS 242
+ ++ +P + + +QL G + R G CL AD+MGLGKTLQA+AI +
Sbjct: 953 NALMPNIPSTFQAQLRDYQLVGFDWATRLAHWGAGACL-ADDMGLGKTLQALAILLSRAN 1011
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-------HLTRFPRVVV 295
G LV+ P + +W +E ++ P +I VF N + L F V+
Sbjct: 1012 EGPSLVIAPTSVCFNWQQEALKFAP---TLNIK-VFADSTNTIAREVLLSELGPFD-CVI 1066
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
ISY +L R + + + W ++ DE+ ++ +KRT KA + + K I +
Sbjct: 1067 ISYGLLQRESEILKKVHWHSIVADEAQALKNPLAKRT------KAAYALKSDFKMIT--T 1118
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP +L+ + +F IN PGLLG K + ++ +D +
Sbjct: 1119 GTPIENNLTELWSLFRFIN---PGLLGNIKRFAQRFSLPIENAH-------EDPLAARKA 1168
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS-- 464
+ L Q ++RR+K +L +LP + IR+ + E +A A+ IN S
Sbjct: 1169 SQALKTLIQPFILRRMKNQVLTELPSRTEINIRVEMSSQERDFYEALRLNAIDNINQSGQ 1228
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
+ +A+ + ++ ACC +L +A+ + I + A
Sbjct: 1229 QANASEQRIRMLAELVKLRQACCN------PKLVMAETT-------IPSAKLAALDALLE 1275
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
++ ++K +IF+ + L +++ + +KG + +DG+T + RQ++V++FQ + I
Sbjct: 1276 ELKLNNHKALIFSQFVGHLQLIKQHLEDKGFDYQYLDGSTPQKQRQASVNAFQ-RGQGDI 1334
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +
Sbjct: 1335 FLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLITQNTIE 1394
Query: 645 E 645
E
Sbjct: 1395 E 1395
>gi|393911013|gb|EJD76123.1| LET-418 protein [Loa loa]
Length = 1755
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/498 (25%), Positives = 224/498 (44%), Gaps = 100/498 (20%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ R +G ++ADEMGLGKT+Q++ + + G LV P +
Sbjct: 539 YQLEGINWLRHCWSQGTDAILADEMGLGKTIQSMVFLYSLVKEGHTRGPFLVAAPLSTLI 598
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRF--------PR---------- 292
+W E E W P D ++V G +++ H F P+
Sbjct: 599 NWEREAEFWCP-----DFYVVTYVGDKDSRTVIREHEFSFIEGAVRGGPKPSRLKTDQGI 653
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY +++ + + +WA L+VDE+H ++ ++ + + D ++
Sbjct: 654 KFHVLLTSYELINIDKSILSSIEWAGLVVDEAHRLKNNQSLF----FRTLRDF--RINYR 707
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH +N L P YD D T + F + SK +
Sbjct: 708 LLLTGTPLQNNLEELFHLLNFLSPDRF----YDM-----DSFTHE------FAEISKEDQ 752
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKA 456
+++L+ LL M+RRLK +L +P K I+R +L + E +S K
Sbjct: 753 IQKLHSLLGPH-MLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNILTRNFEALSPKG 811
Query: 457 A------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSG-FREW 508
+ +I D +K + PK S E +L Y+ + K SG F
Sbjct: 812 GGSQISLINIIMDLKKCCNHPYLFPKASIE------APKLKNGIYEGTALVKASGKFVLL 865
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + E + ++++IF+ K+LD +++F +G + RIDG+ +
Sbjct: 866 QKMLKKLKE-----------QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQA 914
Query: 569 RQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
RQ A+ F +N + + ++ AGG+G++ ++A V+ + +P +QA RAHR G
Sbjct: 915 RQDAIDRFNAANAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 974
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V IY F +++ +E
Sbjct: 975 QQKKVLIYRFVTRNSVEE 992
>gi|323486739|ref|ZP_08092059.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
WAL-14163]
gi|323399958|gb|EGA92336.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
WAL-14163]
Length = 1059
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 225/497 (45%), Gaps = 69/497 (13%)
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-------CFISAGSI-----LVVCPAI 253
L+G RFG ++AD+MGLGKTLQ I + A C +AG LV+CPA
Sbjct: 603 LDGYRFG------GILADDMGLGKTLQTITLLAAEKEERACGTAAGMAQPSVSLVICPAS 656
Query: 254 LRLSWAEELERWLPFCLPADIHLVFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
L +W E + P + LV G R + VV SY +L R +E
Sbjct: 657 LIYNWGHEFSIFAP---SLRVLLVTGPQAERQKELEQIDEYDAVVTSYDLLKRDLPYYME 713
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ I+DE+ +++ + T + VKAV ++ L+GTP +R +++ +
Sbjct: 714 HTFRFEIIDEAQYIKNAS-TQSAKAVKAVKAISR-----FALTGTPVENRLSELWSIFDY 767
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PG L Y KT ++ V+ + ++ + +R ++RRLK +
Sbjct: 768 LMPGFL--FTYRKFKTMFEIPIVKEEDEEALENLHRMIR----------PFILRRLKSDV 815
Query: 431 LVQLPPKRRQIIRLLL--KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
L +LP K +++ K+ E+ A AA+ + E+D +KT + S + R
Sbjct: 816 LKELPVKLEKVVYSAPEGKQKELYRA-AALKLRQSLEED---EKTAETSGKFQILAELTR 871
Query: 489 LGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
L ++ L + +G E + ++ AA+ +K+++F+ +L +
Sbjct: 872 LRQLCCDPSLCFERYNG--ESAKLETCVSLLLSAAE-----SGHKILLFSQFASMLGIIG 924
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ ++GI F + G+T +R V++F ++V + +I + AGG GL+ ++A V+
Sbjct: 925 NRLKKEGIPFYLLTGSTTKEERNKMVNAFH-RDQVPVFLISLKAGGTGLNLTAADIVIHY 983
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
+ + + QA DRAHR GQ V +Y KDT +E+ + + K +
Sbjct: 984 DPWWNVAAQNQATDRAHRIGQEKQVTVYKLIMKDTIEEN-----------ILNLQEAKKN 1032
Query: 668 ALQEIAVEG-VSYLEMS 683
+I EG VS EMS
Sbjct: 1033 LADQIVTEGMVSLAEMS 1049
>gi|326798503|ref|YP_004316322.1| SNF2-like protein [Sphingobacterium sp. 21]
gi|326549267|gb|ADZ77652.1| SNF2-related protein [Sphingobacterium sp. 21]
Length = 970
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 209/448 (46%), Gaps = 61/448 (13%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFIS-------AGSILVVCPAILRLSWAEELERWLPFC 269
G CL AD+MGLGKT+Q +A+ G+ L++ P L +W E E++ P
Sbjct: 528 GGCL-ADDMGLGKTVQTLALLQKEREELQEKGIQGTSLIIMPTSLIYNWQSEAEKFAP-A 585
Query: 270 LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSK 328
L IH H +F VVI+ + R+ + +++ + +I+DES +++
Sbjct: 586 LNILIHTGTNRPKVNDHFGKFD--VVITTYGIARVDEELLQGFYFHYIILDESQNIKNPS 643
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
S KAV ++ +K + + LSGTP + D++ Q++ L PGLLG + +
Sbjct: 644 SKS----FKAVKELRSKYR--LTLSGTPVENSVGDLWSQMSFLNPGLLGSHAHFQSDFVI 697
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR 448
++ + + + +L ++K V+ RR K + +LPPK QI
Sbjct: 698 PIEKKKDEE-----------KARKLQAIIKPFVL-RRTKDQVAQELPPKSEQIF------ 739
Query: 449 SEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508
K + EK + + D+ ++ + G+ KL
Sbjct: 740 ----YCKMSDEQAEYYEKIKSEYRNVLLEQSLDELMVKSQIQVLQ----GLTKLRQ---- 787
Query: 509 LSIHPVIAESDGAAD----------ID-VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
L+ HP + + D + +D V R +K++IF+ +K L+ + +K I +
Sbjct: 788 LANHPRMVDEDYEGESGKFENVVHTLDSVLSRGHKVLIFSQFVKQLEIFRRHFDKKKIRY 847
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
+DG+T R+R+ V+ F+ + EVK+ +I I AGGVGL+ A V L+ +P++
Sbjct: 848 AYLDGST--RNREDVVNDFRNNEEVKLFLISIKAGGVGLNLIEADYVFILDPWWNPAVEQ 905
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA DR+HR GQT V IY F KD+ +E
Sbjct: 906 QAIDRSHRIGQTKNVFIYKFITKDSVEE 933
>gi|407012688|gb|EKE26984.1| hypothetical protein ACD_4C00096G0001 [uncultured bacterium (gcode
4)]
Length = 481
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/493 (26%), Positives = 230/493 (46%), Gaps = 75/493 (15%)
Query: 191 GKLPKSLLDVILPFQLEGVRFGLRRGGRCL---IADEMGLGKTLQA-IAIAAC--FISAG 244
++P + I +Q EGV++ R CL +AD+MGLGKTLQA IAI I +
Sbjct: 10 SEIPSCINANIRGYQKEGVQWLERLRMMCLNGILADDMGLGKTLQAIIAIKQSQEKIFSP 69
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFG---HRNNPVHLTRFPRVVVISYTML 301
SI VVCP L +W EE+ + FC ++ +V G R + VV+ SY+++
Sbjct: 70 SI-VVCPTSLLYNWKEEINK---FCPTINVIVVDGMPNQRKKLISNISDKDVVITSYSLI 125
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + + ++ ++DE+ H++ +++T + VK +L+ + K ++L+GTP +
Sbjct: 126 QKDIELYKDMCFSYAVLDEAQHIK-NRQTRNAKSVK-ILNASHK----MILTGTPIENSL 179
Query: 362 YDIFHQINMLWPGLLGKAKYD-FAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+++ + L P L + YD F + Y ++ + + + V
Sbjct: 180 DELWSLFDFLMPSFL--SSYDRFTERY--IRLTGKTNAKNIEYLKRKV----------AP 225
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR+K +L +LPP + L S++ ++ S KD K+ E
Sbjct: 226 FILRRMKTDVLKELPPVSEIVYHCKLTESQLELYRSYA----QSAKDELTKLVQKEGFE- 280
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVI--AESDGAAD--------------I 524
Q +A L+ ++ + HP I E D I
Sbjct: 281 ------------KVQIHVLATLTRLKQ-ICCHPAIFAKEKKEVGDSAKYEMLLELIQNLI 327
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
D N +K +IF+ + K+L ++E + +KG+ F +DG + ++R V F + E+KI
Sbjct: 328 DAN---HKTVIFSQYTKMLQIMREDLDQKGVKFSYLDGTS--KNRLQIVKDFNENKEIKI 382
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ + AGG GL+ + A +V+ ++ +P++ QA DR HR GQ ++V+ Y +T +
Sbjct: 383 FLVSLKAGGTGLNITGADSVIHYDMWWNPAVENQATDRVHRIGQKNSVSAYKLVTVNTIE 442
Query: 645 ES--HWQNLNKSL 655
E QN K L
Sbjct: 443 EKIVEMQNRKKGL 455
>gi|37542688|gb|AAL47203.1| chromatin-remodeling factor CHD3 [Oryza sativa Indica Group]
Length = 1111
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 132/571 (23%), Positives = 243/571 (42%), Gaps = 117/571 (20%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISA-GSILVVCPAILRLS 257
P+QLEG+ R+ R ++ DEMGLGKT+Q+IA + + F+ G LVV P +
Sbjct: 288 PYQLEGLNFLRYSWYHNKRVILGDEMGLGKTIQSIAFLGSLFVDKLGPHLVVAPLSTLRN 347
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-------------------------- 291
W E W P ++ + FG + + ++
Sbjct: 348 WEREFATWAP---QMNVVMYFGSAASREIIRKYEFYYPKEKPKKLKKKKSSPSNEDKKQS 404
Query: 292 ----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAK 345
V++ SY M++ + +W +IVDE H ++ SK + +E
Sbjct: 405 RIKFDVLLTSYEMINMDSTVLKTIEWECMIVDEGHRLKNKDSKLFGQLKEYHT------- 457
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
K VLL+GTP + ++F ++ L G + D++ + F+D +
Sbjct: 458 -KHRVLLTGTPVQNNLDELFMLMHFLEGDSFG--------SIADLQ-------EEFKDIN 501
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIV 452
+ ++E+L+ +LK ++RR K+ ++ +LPPK+ I+R +L K E++
Sbjct: 502 QDKQVEKLHGMLKPH-LLRRFKKDVMKELPPKKELILRVELTSKQKEYYKAILTKNYEVL 560
Query: 453 SAKAA-----VGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ ++ + V+ + K + + +E +S R + + SG E
Sbjct: 561 TRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALR---------RLLESSGKME 611
Query: 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567
L V + G ++++I++ +LD +++++S + + RIDG
Sbjct: 612 LLDKMMVKLKEQG----------HRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGA 661
Query: 568 DRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
+RQ + F N + ++ AGG+G++ ++A V+ + +P LQA RAHR
Sbjct: 662 ERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721
Query: 627 GQTSAVNIYIFCAKDTTDESHWQNLNKSLRC-------VSSATNGKYDALQEIAVEGVSY 679
GQTS V IY ++ T +E Q K + ++ TN + L +I G
Sbjct: 722 GQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKE 781
Query: 680 LEMSDKTDRGS-------EDLTLDQVASSDQ 703
L D+ D +D +D++ DQ
Sbjct: 782 L-FDDENDEAGKSCQIHYDDAAIDRLLDRDQ 811
>gi|313217104|emb|CBY38281.1| unnamed protein product [Oikopleura dioica]
Length = 1430
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/550 (23%), Positives = 240/550 (43%), Gaps = 84/550 (15%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLS 257
+Q+EGV F + C++ADEMGLGKT+Q+I G L+V P +
Sbjct: 436 YQVEGVSWLLFNWYQKRNCILADEMGLGKTIQSITFIQKICETNHRGPFLIVVPLSTVGN 495
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTR--------FPR-------VVVISYTMLH 302
W E E W L A ++ +H +P+ ++ +Y M+
Sbjct: 496 WIREFETWTD--LNAIVYHGSAQSRQMIHQYELYQRDKKGYPKRGDFRFDALITTYEMIV 553
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ +W L+I+DE+H ++ +K + E +K + ++ VLL+GTP +
Sbjct: 554 ADIPEIRNVNWQLMIIDEAHRLKNTK-SKLAENLKNM-----HIEHKVLLTGTPLQNNIE 607
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ +N + P YD GY + + + +E++ +LK +M
Sbjct: 608 ELYALLNFMNPTDF----YDI-----------GYFMREYGILTNKEHVEKMQNVLK-PIM 651
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS-EKDATNDKTPKDSDEHD 481
+RRLK+ + L PK II + L + +A + D K A+ P +
Sbjct: 652 LRRLKEDVEKSLAPKEETIIEVELTNIQKKYYRAILERNFDFLSKGASTGNVPSLMNTMM 711
Query: 482 DSGACCR------------------LGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+ CC G+++ I + SG + + IH ++ +
Sbjct: 712 ELRKCCNHPFLIKGAEDKIIDEYRAKGEVADPLTSIVQASG--KMVLIHKLLPKLKAGG- 768
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+K++IF+ ++VLD +++++ + +GF R+DG DRQ+A+ F + +
Sbjct: 769 -------HKVLIFSQMIRVLDILEDYLYQMSMGFERLDGRIRGNDRQAAIDRFCKPDSDR 821
Query: 584 IAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ T AGG+G++ ++A V+ + +P LQA+ R HR GQ V IY T
Sbjct: 822 FVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKEVKIYRLLTSKT 881
Query: 643 TDESHWQ------NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
+ + L++++ S T+GK DA ++ +S E+ D +G+ +D
Sbjct: 882 YEREMFDRASLKLGLDRAVLQSMSGTSGK-DAGGPMS--SLSKKEVEDLLKKGAYGALMD 938
Query: 697 QVASSDQFQE 706
++++F E
Sbjct: 939 DDDAAEKFCE 948
>gi|355623390|ref|ZP_09047173.1| hypothetical protein HMPREF1020_01252 [Clostridium sp. 7_3_54FAA]
gi|354822443|gb|EHF06804.1| hypothetical protein HMPREF1020_01252 [Clostridium sp. 7_3_54FAA]
Length = 1059
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 225/497 (45%), Gaps = 69/497 (13%)
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-------CFISAGSI-----LVVCPAI 253
L+G RFG ++AD+MGLGKTLQ I + A C +AG LV+CPA
Sbjct: 603 LDGYRFG------GILADDMGLGKTLQTITLLAAEKEERACGTAAGMAQPSVSLVICPAS 656
Query: 254 LRLSWAEELERWLPFCLPADIHLVFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
L +W E + P + LV G R + VV SY +L R +E
Sbjct: 657 LIYNWGHEFSIFAP---SLRVLLVTGPQAERQKELEQIDEYDAVVTSYDLLKRDLPYYME 713
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ I+DE+ +++ + T + VKAV ++ L+GTP +R +++ +
Sbjct: 714 HTFRFEIIDEAQYIKNAS-TQSAKAVKAVKAISR-----FALTGTPVENRLSELWSIFDY 767
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PG L Y KT ++ V+ + ++ + +R ++RRLK +
Sbjct: 768 LMPGFL--FTYRKFKTMFEIPIVKEEDEEALENLHRMIR----------PFILRRLKSDV 815
Query: 431 LVQLPPKRRQIIRLLL--KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
L +LP K +++ K+ E+ A AA+ + E+D +KT + S + R
Sbjct: 816 LKELPVKLEKVVYSAPEGKQKELYRA-AALKLRQSLEED---EKTAETSGKFQILAELTR 871
Query: 489 LGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
L ++ L + +G E + ++ AA+ +K+++F+ +L +
Sbjct: 872 LRQLCCDPSLCFERYNG--ESAKLETCVSLLLSAAE-----SGHKILLFSQFASMLGIIG 924
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ ++GI F + G+T +R V++F ++V + +I + AGG GL+ ++A V+
Sbjct: 925 NRLKKEGIPFYLLTGSTTKEERNKMVNAFH-RDQVPVFLISLKAGGTGLNLTAADIVIHY 983
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
+ + + QA DRAHR GQ V +Y KDT +E+ + + K +
Sbjct: 984 DPWWNVAAQNQATDRAHRIGQEKQVTVYKLIMKDTIEEN-----------ILNLQEAKKN 1032
Query: 668 ALQEIAVEG-VSYLEMS 683
+I EG VS EMS
Sbjct: 1033 LADQIVTEGMVSLAEMS 1049
>gi|443719422|gb|ELU09603.1| hypothetical protein CAPTEDRAFT_166178 [Capitella teleta]
Length = 1711
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/512 (24%), Positives = 222/512 (43%), Gaps = 102/512 (19%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-- 241
DE+ GKL +QLEG+ R + ++ADEMGLGKT+Q IA
Sbjct: 496 DEVGGKLHD--------YQLEGLNWLRHSWNQHTDTILADEMGLGKTIQTIAFLRSLYRE 547
Query: 242 --SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRFP-- 291
+AG LV P ++W E E W P D+++V G +++ H F
Sbjct: 548 GHTAGPFLVSAPLSTIINWEREFEFWAP-----DLYVVTYVGDKDSRAVIREHEFSFEEG 602
Query: 292 -------------------RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
+V++ SY ++ + ++ DW++L+VDE+H R S+
Sbjct: 603 AIRGGNKAFKMRKDSGVKFQVLLTSYELICIDQATLGSVDWSVLVVDEAH--RLKNNQSK 660
Query: 333 PEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ ++ K+ LL+GTP + ++FH +N L ++ T+ +
Sbjct: 661 FFRILQSYNIGYKL----LLTGTPLQNNLEELFHLLN-----FLDSKQFGHMTTFLEE-- 709
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIV 452
F D SK ++++L+ +L ++RRLK +L +P K I+R+ L +
Sbjct: 710 --------FADISKEDQIKKLHEVLGPH-LLRRLKADVLKNMPSKSEFIVRVELNPMQ-- 758
Query: 453 SAKAAVGVINDSEKDATNDKTPKDS----DEHDDSGACC--------------RLGKISY 494
+ I +A N +T + + D CC +L +
Sbjct: 759 --RKYYKYILTRNFEALNSRTGSNQVSLLNIMMDLKKCCNHPYLFPTAANEAPKLPNGMF 816
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
+ G+ K G E ++ +DG ++++IF+ K+LD +++F+ +G
Sbjct: 817 EGRGLIKACGKLELMAAMLRKLSNDG----------HRVLIFSQMTKMLDILEDFLENEG 866
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSP 613
+ RIDG RQ A+ F A ++ AGG+G++ ++A VV + +P
Sbjct: 867 YKYERIDGGVTGSLRQDAIDRFNAPGSPAFAFLLSTRAGGLGINLATADTVVIYDSDWNP 926
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+QA RAHR GQ + V IY F +++ +E
Sbjct: 927 HNDIQAFSRAHRIGQANRVLIYRFVTRNSVEE 958
>gi|416014172|ref|ZP_11562063.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. B076]
gi|320326123|gb|EFW82179.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. B076]
Length = 650
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 223/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K +S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKALESF--SLMDHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAG---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRDEISDWMLRR-------RKDVLPNLKGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N SD+H A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIM--RSDQHR-----------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E + GIG V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDQDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|399889748|ref|ZP_10775625.1| non-specific serine/threonine protein kinase [Clostridium arbusti
SL206]
Length = 1036
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 221/474 (46%), Gaps = 76/474 (16%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
LPK L + +Q++G ++ L GG ++ADEMGLGKT+Q IA L
Sbjct: 577 LPKELRANLRQYQIDGFKWFENLNDLGFGG--ILADEMGLGKTVQTIAFLIS-EKGKKAL 633
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS 307
++ P L +W +E+ER+ P H + ++ + V++ +Y L R S
Sbjct: 634 IITPTSLIYNWKDEIERFAPRLRVGVAHGNMTKQEKLINELQQYDVILTTYGTL-RNNIS 692
Query: 308 MIEQ-DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ E D+ I+DE+ +++ + AV V +K K L+GTP + +++
Sbjct: 693 IYEAVDFDHCIIDEAQNIK----NPIAQSTMAVKRVKSKTK--FALTGTPVENNLTELWS 746
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD---FSKGVRLEELNVLLKQTVMI 423
+ + PG L Y ++F + F+ LE L +L+K ++
Sbjct: 747 IFDFVMPGYL-------------------YSKEIFYEKFIFNNEEGLENLKLLIKPFIL- 786
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR+K ++ LP K + ++L+ E+ SA+ A+ + +D E +
Sbjct: 787 RRIKMEVIEDLPDKMEK--KMLV---EMTSAQKAIY-----------NTYIRDIREKMKN 830
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESDGAADIDVN----------PRSN 531
+ ++ SY L+ R+ + + P VI E G + VN +
Sbjct: 831 NSEAKIEVFSY-------LTRLRQ-ICLDPSLVIEEYKGGSG-KVNLALQLIEKQIANNG 881
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K+++F+ VL+ + ++EKGI + I G+T P++R V+ F ++VK+ +I + A
Sbjct: 882 KLLLFSQFTSVLNKIGHVLNEKGIEYFHIYGSTNPKERIKLVNEFNNGDKVKVFLISLKA 941
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG GL+ +SA V+ + +P++ QA DRAHR GQ + V + ++ T +E
Sbjct: 942 GGTGLNLTSANLVIHFDPWWNPAVEDQATDRAHRIGQKNIVEVIKLVSRGTIEE 995
>gi|323340857|ref|ZP_08081108.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
gi|323091708|gb|EFZ34329.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
Length = 975
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 128/497 (25%), Positives = 223/497 (44%), Gaps = 65/497 (13%)
Query: 193 LPKSLLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACF-------IS 242
LP L + P+Q EG R+ L G ++ADEMGLGKTLQ I + +S
Sbjct: 504 LPSGLNAKLRPYQEEGYRWLASLANGNFGGILADEMGLGKTLQTITLLLAAKDDKISQVS 563
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
+G L+V PA L +W E E + P I+ R++ + +V+ +Y L
Sbjct: 564 SGQALIVTPAALLYNWQNEFENFAPTLKTLVINGTKKQRHDLLADVADYDIVLTTYDQLK 623
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R + +E ++ I+DE+ +++ S + KAV + AK + L+GTP +R
Sbjct: 624 RDFEDYLELEFEYEIIDEAQNIKNSTTQAS----KAVKAIDAKTR--FALTGTPIENRLS 677
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+++ + + PG L +Y + + + ++ + D KG++ L+K V
Sbjct: 678 ELWSIFDYVMPGYLF--------SYNEFR--EQFERPIMIDEEKGMQ----KALIKMIVP 723
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS-AKAAVGVINDSEKDATNDKTPKDSDE 479
++RR K +L LP K ++R +K G+ + + + K +DE
Sbjct: 724 FVLRRKKSQVLKDLPEK--------IERPYYAEMSKKQAGLYQAMVNELRTELSQKSADE 775
Query: 480 HDDSGACCRLGKISYQELGIAKLSGFREWLSIHP--VIAESDGAADIDVN---------P 528
S KI +AKL+ R+ + P V ++ DG + N
Sbjct: 776 FKQS-------KIEI----LAKLTKIRQ-ICCDPSLVYSDYDGESGKTDNCMELIESALS 823
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++I+F+ + +L +++ + ++ I F +I G T +R V F N+V I +I
Sbjct: 824 GGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFN-QNDVPIFLIS 882
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+ AGG GL+ A ++ + + + QA DRAHR GQT V +Y KDT +E
Sbjct: 883 LKAGGTGLNLVGADVIIHYDPWWNEAAQNQATDRAHRIGQTKNVLVYKLIVKDTIEEKIL 942
Query: 649 QNLNKSLRCVSSATNGK 665
+ + + +GK
Sbjct: 943 KMQEQKSKLADDILSGK 959
>gi|290973846|ref|XP_002669658.1| DEAD/DEAH box helicase [Naegleria gruberi]
gi|284083208|gb|EFC36914.1| DEAD/DEAH box helicase [Naegleria gruberi]
Length = 1029
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/492 (23%), Positives = 213/492 (43%), Gaps = 76/492 (15%)
Query: 193 LPKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI--- 246
+PK + D + +Q +++ R+G ++ DEMGLGKT+Q A +G
Sbjct: 283 IPKEIYDKLFGYQKTTLKWMCELNRQGVGGILGDEMGLGKTVQITTFLAGLHFSGLFEPS 342
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL----TRFPR-VVVISYTML 301
+++ PA + W EE+ W P +H G + N L + P V++ +Y L
Sbjct: 343 IIIAPATVMKQWQEEINTWWPELRVVIMHTSQGTKANFESLIEKVSSCPNGVLITTYESL 402
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK---VKRIVLLSGTPSL 358
+ + + W +I+DE H +R P+ A L +A K ++L+GTP
Sbjct: 403 RIYQDVLTSKKWGYIILDEGHKIR------NPD---AALTLACKRFETPHRIILTGTPIQ 453
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ +++ + +PG LG F + T GY + + L
Sbjct: 454 NNLKELWSLFDFCYPGKLGTLPV-FLTQFSIPITQGGYSNATKFQVQTAYKCSCVLRDLI 512
Query: 419 QTVMIRRLKQHLLVQLPPKRRQII--RLLLKR----SEIVSAKAAVGVINDSE---KDAT 469
+ ++RR+K+ + QLP K+ +I +L K+ E + ++ G ++ K T
Sbjct: 513 KPYLLRRMKKDVKHQLPEKKENVIFCKLTDKQVKIYDEYLKSREVTGTLDGEHLLFKAIT 572
Query: 470 N-------------DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA 516
N +K P DD GA + GK+ E LS ++E
Sbjct: 573 NLRKVCNHPDLICTEKKP------DDFGAVEKSGKMMVVE---KLLSLWKE--------- 614
Query: 517 ESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF 576
+++++++F+ K+LD + F+ E+ + R+DG+T ++R ++ F
Sbjct: 615 ------------QNHRVLLFSQSKKMLDVFEPFLQERDYTYSRMDGDTPVKERSVLINQF 662
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
+++ + ++ GG+G++ A ++ + +PS LQA +RA R GQT V +Y
Sbjct: 663 NSDDKIFVFLLTTKVGGLGVNLIGANRIILFDPDWNPSTDLQALERAWRLGQTKQVTVYR 722
Query: 637 FCAKDTTDESHW 648
T +E +
Sbjct: 723 LMTSGTIEEKMY 734
>gi|357134639|ref|XP_003568924.1| PREDICTED: probable chromatin-remodeling complex ATPase chain-like
[Brachypodium distachyon]
Length = 1101
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 213/468 (45%), Gaps = 63/468 (13%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 232 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 291
Query: 257 SWAEELERWLPFCLPADIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+W +E+ R+ P RN N + +F V V S+ M + + ++
Sbjct: 292 NWMKEIARFCPILRAVKFLGNPEERNHIRENLLAPGKFD-VCVTSFEMAIKEKTALRRFS 350
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N L
Sbjct: 351 WRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWSLLNFLL 404
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
P + + A+T+ + + G Q ++ Q K +R ++RRLK +
Sbjct: 405 PEI-----FSSAETFDEWFQISGENDQHEVVQQLHKVLR----------PFLLRRLKSDV 449
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
LPPK+ I+++ + + +A + KD + + G RL
Sbjct: 450 EKGLPPKKETILKVGMSEMQKQYYRALL---------------QKDLEVINAGGERKRLL 494
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMIIFAH 538
I+ Q + P D + + R ++++IF+
Sbjct: 495 NIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIENAGKMVLLDKLLPKLKARDSRVLIFSQ 554
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLD 597
++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+G++
Sbjct: 555 MTRLLDILEDYLMYRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 614
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A VV + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 615 LATADIVVLYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 662
>gi|402590896|gb|EJW84826.1| chromodomain-helicase-DNA-binding protein 4 [Wuchereria bancrofti]
Length = 1519
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/498 (25%), Positives = 224/498 (44%), Gaps = 100/498 (20%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+QLEG+ R +G ++ADEMGLGKT+Q++ + + G LV P +
Sbjct: 539 YQLEGINWLRHCWSQGTDAILADEMGLGKTIQSMVFLYSLVKEGHTRGPFLVAAPLSTLI 598
Query: 257 SWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRF--------PR---------- 292
+W E E W P D ++V G +++ H F P+
Sbjct: 599 NWEREAEFWCP-----DFYVVTYVGDKDSRTVIREHEFSFIEGAVRGGPKPSRLKTDQGI 653
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY +++ + + +WA L+VDE+H ++ ++ + + D ++
Sbjct: 654 KFHVLLTSYELINIDKSILSSIEWAGLVVDEAHRLKNNQSLF----FRTLRDF--RINYR 707
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH +N L P YD D T + F + SK +
Sbjct: 708 LLLTGTPLQNNLEELFHLLNFLSPDRF----YDM-----DSFTHE------FAEISKEDQ 752
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR-------------LLLKRSEIVSAKA 456
+++L+ LL M+RRLK +L +P K I+R +L + E +S K
Sbjct: 753 IQKLHSLLGPH-MLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNILTRNFEALSPKG 811
Query: 457 A------VGVINDSEKDATNDKT-PKDSDEHDDSGACCRLGKISYQELGIAKLSG-FREW 508
+ +I D +K + PK S E +L Y+ + K SG F
Sbjct: 812 GGSQISLINIIMDLKKCCNHPYLFPKASIE------APKLKNGIYEGTALVKASGKFVLL 865
Query: 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
+ + E + ++++IF+ K+LD +++F +G + RIDG+ +
Sbjct: 866 QKMLKKLKE-----------QGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQA 914
Query: 569 RQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
RQ A+ F +N + + ++ AGG+G++ ++A V+ + +P +QA RAHR G
Sbjct: 915 RQDAIDRFNAANAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 974
Query: 628 QTSAVNIYIFCAKDTTDE 645
Q V IY F +++ +E
Sbjct: 975 QQKKVLIYRFVTRNSVEE 992
>gi|71988744|ref|NP_499301.2| Protein M03C11.8 [Caenorhabditis elegans]
gi|426021006|sp|G5EDG2.1|SMRCD_CAEEL RecName: Full=SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1 homolog
gi|31043816|emb|CAA88960.2| Protein M03C11.8 [Caenorhabditis elegans]
Length = 989
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/541 (23%), Positives = 230/541 (42%), Gaps = 94/541 (17%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLS 257
+QL GV++ + + ++ DEMGLGKT+Q +A + G L+V P+ +
Sbjct: 397 YQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIEN 456
Query: 258 WAEELERWLPFCLPADIHLV--FGHRNNPVHLTRFPR-------VVVISYTML-HRLRKS 307
W E +W P I L+ +G ++ HL + V++ +Y M+ +
Sbjct: 457 WIGEFHKWCP-----SIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDK 511
Query: 308 MIEQDWAL--LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
++++L +I DE H ++ + E + ++ V K K +LL+GTP + ++
Sbjct: 512 KFFKNFSLNYVIYDEGHMLK----NCDSERYRGLMKVKGKKK--ILLTGTPLQNNLIELI 565
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ + + K D K + + + R+EE +L Q ++RR
Sbjct: 566 SLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAIL-QPYILRR 624
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
LK +L LP K QII + +K+ + V + SE+ D G+
Sbjct: 625 LKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESG------------DSYGS 672
Query: 486 CCRLGKISYQEL------------GIAKLSGFRE----------------WLS---IHPV 514
RL + + L IAK+ RE WLS IH +
Sbjct: 673 LMRLRQAANHPLLRRSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLAWLSDIKIHQL 732
Query: 515 ---------------IAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
+A G + ++ + +K++IF+ +LD ++ +++ +
Sbjct: 733 CERFRCTSKFLLNEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIR 792
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
G + R+DG T DRQ ++ F LS ++ + ++ AGG+G++ +SA +++ ++ +P
Sbjct: 793 GYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNP 852
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIA 673
QAEDR HR GQ V++ +K T + K L+ T+G L E A
Sbjct: 853 YNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVTDGVKGQLDEDA 912
Query: 674 V 674
+
Sbjct: 913 L 913
>gi|299755187|ref|XP_001828488.2| SNF2-family ATP dependent chromatin remodeling factor snf21
[Coprinopsis cinerea okayama7#130]
gi|298411108|gb|EAU93321.2| SNF2-family ATP dependent chromatin remodeling factor snf21
[Coprinopsis cinerea okayama7#130]
Length = 1471
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/521 (23%), Positives = 227/521 (43%), Gaps = 104/521 (19%)
Query: 186 VDEMIGKLPKSLLDVILP-FQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFI 241
+ E I K P L+ L +QL+G+++ + L +ADEMGLGKT+Q I++ I
Sbjct: 565 IKEKITKQPSLLVGGTLKEYQLKGLQWMVSLYNNKLNGILADEMGLGKTIQTISLITFLI 624
Query: 242 SA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP---------VHLT 288
G LV+ P +W+ E +W P ++ NP +
Sbjct: 625 EVKRQRGPYLVIVPLSTMTNWSGEFAKWAPQVR------TISYKGNPQQRRMIQQEMRAG 678
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
+F +V++ +Y + + R + + W +I+DE H ++ ++ ++ L +
Sbjct: 679 QF-QVLLTTYEYIIKDRPILSKIKWVHMIIDEGHRMKNTQ-----SKLAQTLTTYYHSRY 732
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
++L+GTP + +++ +N + P K + VK+ + F + G
Sbjct: 733 RLILTGTPLQNNLPELWALLNFVLP-----------KIFNSVKSFDEWFNTPFANSGTGD 781
Query: 409 RLE----ELNVLLKQ------TVMIRRLKQHLLVQLPPKRRQIIRLLLK--RSEIVSAKA 456
++E E +++K+ ++RRLK+ + +LP K ++I++ + +S++
Sbjct: 782 KIELNEEEALLIIKRLHKVLRPFLLRRLKKDVESELPDKVEKVIKVRMSALQSQLYKQMK 841
Query: 457 AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA 516
+I D KD + G + +S + + + K+ HP +
Sbjct: 842 KHKMIADGNKD--------------NKGKSGGIKGLSNELMQLRKICQ-------HPFLF 880
Query: 517 ESDGAADIDVNPRS---NKMI------------------------IFAHHLKVLDGVQEF 549
ES + +NP NK+I IF KV+D +++F
Sbjct: 881 ES---VEDKMNPSGWIDNKLIRASGKVELLSRILPKFFATGHRVLIFFQMTKVMDIMEDF 937
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ G ++R+DG T +R V F + E + I+ AGG+GL+ +A V+ +
Sbjct: 938 LKFMGWKYLRLDGGTKTEERAQFVQLFNSKDSEYMVFILSTRAGGLGLNLQTADTVIIFD 997
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
+P LQA+DRAHR GQT AV I F + + +E+ +Q
Sbjct: 998 SDWNPHADLQAQDRAHRIGQTRAVLILRFITEKSVEEAMYQ 1038
>gi|407362813|ref|ZP_11109345.1| non-specific serine/threonine protein [Pseudomonas mandelii JR-1]
Length = 1018
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 136/523 (26%), Positives = 235/523 (44%), Gaps = 90/523 (17%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI-- 246
P+ L + P+QLEG+ + L GG ++ D+MGLGKTLQ +A AG +
Sbjct: 541 PEGLNATLRPYQLEGLNWMQTLRELEVGG--ILGDDMGLGKTLQTLAHLLTEKQAGRLDR 598
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L V P L +W +E +R+ P +H + + L + +V+ +Y +L R
Sbjct: 599 PALAVMPTSLIPNWLDESQRFTPQLKVLALHGA-ARQKDFASLAEY-DLVLTTYALLPRD 656
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ + Q W++LI+DE+ +++ + +A D+ A+ + + LSGTP + ++
Sbjct: 657 LEVLQPQVWSVLILDEAQNIKNPVSKA----AQAARDLQARQR--LCLSGTPLENHLGEL 710
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ Q + L PG LG +K F + Y G R++ L +K ++R
Sbjct: 711 WSQFHFLLPGWLGDSK-TFNRDYRTPIEKHG----------NNERMQHLTARIK-PFLLR 758
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN------DKTPKDSD 478
R K + +LPPK +EIV ++D ++D DK +D
Sbjct: 759 RKKDQVATELPPK-----------TEIVHWVD----LSDGQRDVYETVRVAMDKKVRDEI 803
Query: 479 EHDDSG---------------ACCRLGKISYQELGIAKLSGFREWLSIHPVIAE--SDGA 521
G CC L I A SG + +S+ ++ E S+G
Sbjct: 804 ARSGVGRSQIIILDALLKLRQVCCDLRLIKTPLTAKALRSGSGKLVSLMEMLEELLSEG- 862
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
K+++F+ +L +++ + ++G G+ + G T DR++ V FQ S +
Sbjct: 863 ---------RKVLLFSQFTSMLALIEDELQQRGQGYSLLTGET--TDRRTPVKDFQ-SGK 910
Query: 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
V + +I + AGG GL+ ++A V+ + +P++ QA DRA+R GQ V +Y A+
Sbjct: 911 VPLFLISLKAGGTGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIARG 970
Query: 642 TTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSD 684
T +E ++L+ +A G A+ E G LE SD
Sbjct: 971 TVEEK-----IQALQLEKAALAG---AVLEGGATGGWKLEQSD 1005
>gi|154276746|ref|XP_001539218.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414291|gb|EDN09656.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 959
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 164/650 (25%), Positives = 267/650 (41%), Gaps = 92/650 (14%)
Query: 195 KSLLDVIL-PF--------QLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAIA 237
K ++DV+L P Q EGV+F G+R G ++ADEMGLGKTLQ IA+
Sbjct: 286 KQIVDVVLDPLLAKHLREHQREGVKFLYECVMGMRSFNGEGAILADEMGLGKTLQTIALI 345
Query: 238 ACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287
+ I L+VCP L +W +E +WL + VF L
Sbjct: 346 WTLLKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKWLG----NERVGVFVADTKRTRL 401
Query: 288 TRFP-----RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLD 341
T F V++I Y L +++ + + ++I DE H +R T + + +A+
Sbjct: 402 TDFTMGKSYSVMIIGYERLRTVQEELSKGSGIDIVIADEGHRMR----TVQNKSAQAIQS 457
Query: 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF 401
+ KRIVL SGTP + + F ++ + PGLLG K F K + G L
Sbjct: 458 LNTS-KRIVL-SGTPIQNDLTEFFAMVDFVNPGLLGTFKM-FMKEFEGPIVKSRQPGALE 514
Query: 402 QDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-------IVS 453
+D KG R EEL+ L ++ I R +L++ P + + + L S ++S
Sbjct: 515 KDIEKGEARSEELSNL--TSLFILRRTADILLKYLPPKTEYVLLCNPTSSQKNIYHHVLS 572
Query: 454 AKAAVGVINDSE---------KDATNDKT---PKDSDEHDDS--GA-CCRLGKISYQELG 498
+ + +SE K N + P++SD+ +S GA L + L
Sbjct: 573 SPIFQCALGNSESALQLITILKKLCNSPSLLKPRNSDQTPNSTLGALISSLPPTVLRYLS 632
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A R + I + S K+++ +++ LD + F++ + F+
Sbjct: 633 PASSGKIRVLDQLLHNIRHT----------TSEKVVLISNYTSTLDLLATFLTSLSLPFL 682
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIA--IIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
R+DG+T P RQ V F S+ + ++ AGG GL+ A ++ ++ +P+
Sbjct: 683 RLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLNLIGASRLILFDVDWNPATD 742
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEG 676
+QA R HR GQ +Y K +E WQ + S + K Q E
Sbjct: 743 IQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMDQKTGVSQFSREEL 802
Query: 677 VSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEI---TAKMN 733
+ + T + +L Q + ++ K +E SD + + DEI T +
Sbjct: 803 KDLFRLDEGTTCQTHELIGCQCGGRGKL-DISKSDNQTEVSDVDSEDNEDEIIDFTKLIK 861
Query: 734 DKLLEESKTDHSPTETDDHHNNVS------QYTG-RIHLYSCVPGTDSRP 776
L+ +++ T N S QYT L C P D+ P
Sbjct: 862 ASRLQPLNSENIATSRRKSRNEKSKMLSLMQYTHIDPSLLCCAPSLDTSP 911
>gi|422653613|ref|ZP_16716375.1| SNF2-related:helicase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330966658|gb|EGH66918.1| SNF2-related:helicase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 652
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 212/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIRHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N + + R + ++H R +A++++DE
Sbjct: 305 EILMVFP---QAQIAMQTFDANAGWIIVNYER---LGDFVMHANR-------FAVMVIDE 351
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 352 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 404
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 405 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLKGKQ 447
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L S+I E+D N SD+H
Sbjct: 448 RQTVPVIL--SQI-------------ERDEYNQIM--RSDQHR----------------- 473
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 474 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKMGVGCV 530
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 531 TLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 590
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 591 AEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|390942523|ref|YP_006406284.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390415951|gb|AFL83529.1| DNA/RNA helicase, superfamily II, SNF2 family [Belliella baltica
DSM 15883]
Length = 987
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 225/481 (46%), Gaps = 77/481 (16%)
Query: 192 KLPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAAC--FISAGS 245
+LP++ + P+Q G +RF R G CL AD+MGLGKT+Q +A+ A +S G+
Sbjct: 520 ELPETFKGTLRPYQKAGYNWLRFLNEYRFGGCL-ADDMGLGKTVQTLALLAHEKKVSEGA 578
Query: 246 I-LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLH 302
L+V P L +W E +++ P L + TRF +V+ SY ++
Sbjct: 579 TSLLVMPTSLIYNWELEAKKFTPGLKI----LTYTGTQRIKDNTRFANYDLVLTSYGII- 633
Query: 303 RLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
RL +++ + +I+DES ++ P + A + ++L+GTP +
Sbjct: 634 RLDLDLLKNFYFNYIILDESQAIK------NPGSIIAKSVGELNCRHKLILTGTPVENGT 687
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE---LNVLLK 418
D++ Q+N + GLLG ++ Q Q K +++ L+ ++K
Sbjct: 688 MDLWSQMNFINSGLLGNQSM--------------FKKQFLQPIEKKNDMDKAAKLHAMIK 733
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT---PK 475
+M RRLK + LP K +++ K + + D E+ K+ K
Sbjct: 734 PFIM-RRLKTQVATDLPEK-------------VINVKYS-SMTEDQERAYEEVKSYYREK 778
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA----ESDGAADIDV----- 526
E GA + Q + L+ R+ ++ HP + E D DV
Sbjct: 779 IVSELSSPGAKNQ------QFTLLRGLTQLRQ-IANHPKLTNKEYEGDSGKLDDVIHMLK 831
Query: 527 --NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
+K+++F+ ++ L V+ ++ E I + +DG+T +DRQ+ V SFQ + VKI
Sbjct: 832 STASEGHKVLVFSQFVRHLAIVKAYLDEHQIKYAYLDGST--KDRQAQVTSFQGDDSVKI 889
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGGVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F ++T +
Sbjct: 890 FLISLKAGGVGLNLTKAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVMIYKFITRNTVE 949
Query: 645 E 645
E
Sbjct: 950 E 950
>gi|342866497|gb|EGU72158.1| hypothetical protein FOXB_17402 [Fusarium oxysporum Fo5176]
Length = 2124
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 153/580 (26%), Positives = 251/580 (43%), Gaps = 93/580 (16%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F +G ++ADEMGLGKT+Q ++ + +A G LVV P +
Sbjct: 453 FQLRGLNFLCLNWTKGNNVILADEMGLGKTVQTVSFLSWLRNARRQEGPSLVVAPLSVIP 512
Query: 257 SWAEELERWLP------FCLPADIH--------LVFGHRNNPVHLTRFPRVVVISYTMLH 302
+W + W P + P D LV G+ P +F V+V SY +
Sbjct: 513 AWCDTFNHWSPDINYVVYLGPEDARKIIREHELLVDGNPKKP----KF-NVLVTSYEFIL 567
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ + + W L VDE+H R R S+ + K+ L++GTP +
Sbjct: 568 QDWQFLQSIKWQTLAVDEAH--RLKNRESQLYNRLVSFGIPCKI----LITGTPIQNNLA 621
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
++ ++ L PG K D + D+ ++ Q +L++L+ + +
Sbjct: 622 ELSALLDFLNPG-----KVDIDE---DLDSLSASDAQ--------EKLQQLHKAI-APFI 664
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR K+ + LPPK +IIR+ L ++ K + + DATN H +
Sbjct: 665 LRRTKETVESDLPPKTEKIIRVELSDVQLEYYKNILTRNYTALCDATNG--------HKN 716
Query: 483 S--GACCRLGKIS---YQELGIAK--LSG-FREWLSIHPVIAESDGAADID-----VNPR 529
S L KIS Y G + L+G R I +IA S +D +N
Sbjct: 717 SLLNIMMELKKISNHPYMFPGAEEKVLAGSVRREDQIKGLIASSGKMMLLDQLLSKLNKD 776
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIG 588
++++IF+ +K+LD + ++ S +G F R+DG R+ A++ F + ++
Sbjct: 777 GHRVLIFSQMVKMLDILGDYCSLRGYKFQRLDGTIAAGPRRMAINHFNADDSDDFCFLLS 836
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
AGG+G++ +A V+ + +P LQA RAHR GQ VNIY +K+T +E
Sbjct: 837 TRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKRPVNIYRLVSKETVEEEVL 896
Query: 649 QN-----LNKSLRCVSSATNGKYDALQE------IAVEGVSYLEMSDKTDRGSEDLTLDQ 697
+ L + L + T+ A +E + VEG S SED+ +
Sbjct: 897 ERARNKLLLEYLTIQAGVTDDGKAAFKEELNKKGLRVEGPS----------SSEDIQMVL 946
Query: 698 VASSDQFQELMKVPESSEASDFRAINTNDEIT-AKMNDKL 736
S + E E E D +I N E+T K++DK+
Sbjct: 947 KMRSSKMFEQSGNQERLEQLDIDSILENAEVTKTKVDDKI 986
>gi|257481637|ref|ZP_05635678.1| SNF2-related:helicase, C-terminal, partial [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 629
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 209/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 240 LMDHQPAGIRHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 298
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N +V++Y L M +A++++DE
Sbjct: 299 EILMVFP---QAQIAMQTFDANAGW--------IVVNYERLGDF--VMHANRFAVMVIDE 345
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 346 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 398
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 399 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLKGKQ 441
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L + E +D N SD+H
Sbjct: 442 RQTVPVILSQVE---------------RDEYNQIM--RSDQHR----------------- 467
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 468 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKMGVGCV 524
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 525 TLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 584
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 585 AEDRAYRNGQLRVVVVKIPLAEDTIDQQLWQML 617
>gi|384485492|gb|EIE77672.1| hypothetical protein RO3G_02376 [Rhizopus delemar RA 99-880]
Length = 1497
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 140/593 (23%), Positives = 266/593 (44%), Gaps = 100/593 (16%)
Query: 204 FQLEGVRFGL-----RRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAIL 254
+QL GV + R G ++ADEMGLGKT+Q I+ G LVV P
Sbjct: 436 YQLHGVNWMYWLWCKNRNG--ILADEMGLGKTVQTISFFNVLYHKQKLYGPFLVVVPLST 493
Query: 255 RLSWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPRV----VVISYTMLHRLRK 306
+W E ++W P C + RN +++ ++ ++ +Y ++ + +
Sbjct: 494 SDNWMNEFKQWAPEMNVICYLGNRASREAIRNTEFYVSGTNKIKFNILITTYEIVLKDKD 553
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ W L VDE+H ++ S S+ E + A ++ L++GTP + ++
Sbjct: 554 ILGSIRWQYLAVDEAHRLKNS--DSQLYEALSSFSTANRL----LITGTPLQNSIKELLA 607
Query: 367 QINMLWPGL-LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ L P + L + +D DV +D ++ +++ L+ LK ++M+RR
Sbjct: 608 LVRFLMPSMDLSQYSFDL-----DV-----------EDANQEEKIKALHEQLK-SIMLRR 650
Query: 426 LKQHLLVQLPPKRRQIIRLLLKR------------------SEIVSAKAAVGVINDSEKD 467
LK+ + LP K +I+R+ L S + K + + + +K
Sbjct: 651 LKKDVEKSLPNKTERILRVQLSEMQKSYYKGILTRNFDFLASSCENKKQWLNIAVELKKA 710
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+ + D+++H R+ ++ G+ + SG L ++DG
Sbjct: 711 SNHPFLFPDAEKH----TMDRMEQLK----GLVENSGKMVLLDKLLTRMKTDG------- 755
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
++++IF+ + +LD + ++++ +G F R+DG+T P +R A+ F + + +
Sbjct: 756 ---HRVLIFSQMVMMLDILSDYMTLRGHPFQRLDGSTKPEERNKAIEHFNAPDSPDFVFL 812
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ +A V+ + +P LQA RAHR GQT +VN+Y F +K T +E
Sbjct: 813 LSTRAGGMGINLVTADTVIIFDSDWNPQNDLQAMSRAHRIGQTKSVNVYRFVSKGTMEED 872
Query: 647 HWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYL-EMSDKTDRG-SEDLTLDQVASSDQF 704
+ + + +Y ++++ G S L E S KT G + DL Q
Sbjct: 873 IIERAKRKMVL-------EYCIIKQMDTSGYSLLAEHSLKTASGKNRDLPF-------QN 918
Query: 705 QELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
QEL + + + F++ +E T ++ND L++ TET D +++ +
Sbjct: 919 QELSAILKFGAKNMFQS----NEPTEQLNDMDLDDILARAEQTETMDENDSTA 967
>gi|325853079|ref|ZP_08171228.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
18C-A]
gi|325484453|gb|EGC87374.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
18C-A]
Length = 1302
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 217/461 (47%), Gaps = 46/461 (9%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+PK+L + +Q EG + + G CL AD+MGLGKT+Q A+ G+ L+
Sbjct: 841 VPKTLQAQLRDYQEEGFEWMSKLTAWGAGVCL-ADDMGLGKTVQTTALLLEQQEKGASLI 899
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V PA + +W EL R+ P L + R+ + + +++I+Y +L+ ++ +
Sbjct: 900 VAPASVVPNWCNELRRFAP-TLNVTVLNQSEDRSKDIKEAKAGDIIIITYALLNIQQEDL 958
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIF 365
++W ++ +DE+H ++ + + KA + + A+ R V+L+GTP L+ +++F
Sbjct: 959 TAREWNVVCLDEAHTIK----NANTKMSKAAMRLQAQ--RRVILTGTPIQNHLAELWNLF 1012
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
IN PGLLG A+ F K + + ++G D K R +L L+ ++RR
Sbjct: 1013 QFIN---PGLLGSAE-QFKKKF--ILPIEG-------DNDKN-RQSQLRKLI-SPFLLRR 1057
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K ++ +LP K + + L E+ + + + DK ++
Sbjct: 1058 TKSEVIDELPEKNEIKLPVELSSDEMAMYEVRRRETEERVRANVGDKMSTLAEITRLRQM 1117
Query: 486 CCRLGKISYQELGIAKLSGFREW-LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
C + R+W L V+A D A +D N+ ++F+ +
Sbjct: 1118 ACSCSLVD------------RKWKLPSSKVLAFIDLAESLD--ESGNRALVFSQFTSFFE 1163
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
V++ + + + ++ +DG+ R+ V FQ + + +I + AGG+GL+ + A V
Sbjct: 1164 EVKQAMDKAKLSYLYLDGSMPMAMREKLVKDFQ-TGKCPFFLISLKAGGLGLNLTGANYV 1222
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1223 IHLDPWWNPAIEQQATDRAYRIGQKQNVTVYHLISQHTIEE 1263
>gi|398799612|ref|ZP_10558895.1| DNA/RNA helicase, superfamily II, SNF2 family [Pantoea sp. GM01]
gi|398097854|gb|EJL88153.1| DNA/RNA helicase, superfamily II, SNF2 family [Pantoea sp. GM01]
Length = 1335
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 238/523 (45%), Gaps = 66/523 (12%)
Query: 138 VLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSD-EVVDEMIGKLPKS 196
+L +K++ + V + TL ++ L+ + R + + L + + ++ + LP +
Sbjct: 826 MLMAVKDNKALTVTTL---TLPFIKTLAEEVGDLRGDSDWQQQLHELKAREKHLPGLPST 882
Query: 197 LLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
L + +QLEG + R G CL AD+MGLGKTLQ +A+ G LV+ P
Sbjct: 883 LKAELRDYQLEGFYWLSRLAHWGVGACL-ADDMGLGKTLQTLALLLERAPHGPQLVIAPT 941
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+ +W E ++ P D F +R + + F VVV+SY ML + +
Sbjct: 942 SVTYNWLSESAKFAPTLQMRD----FRYRRDIADIGEFD-VVVVSYGMLLQEAERFAATQ 996
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQIN 369
W +++DE+ ++ ++ + KAV+ + A + + LSGTP L + +F IN
Sbjct: 997 WHSVVLDEAQAIK----NAQTQRAKAVMALKADFR--LALSGTPIENHLGELWSLFRFIN 1050
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
P LLG K F++ + TV G + L L+K V+ RR K
Sbjct: 1051 ---PRLLGDQK-SFSQKF----TVPIEHG-------SKLAASTLKQLIKPFVL-RRTKAQ 1094
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+L +LPP+ + ++ L SE +A + ++ E D L
Sbjct: 1095 VLDELPPRTDVLHQIPLSESE------------KHWYEALRQQAIENLQESKDLSTIQVL 1142
Query: 490 GKISYQELGIAKLSGF--REWLSIHPVIAESD---GAADIDVNPRSN--KMIIFAHHLKV 542
+I+ +L F L +H V ES +I R N K ++F+ +
Sbjct: 1143 AEIT-------RLRRFCCNPSLVLHDVSLESSKLKACLEIVNELRENHHKALVFSQFVDH 1195
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L ++ + E+ I + +DG+T P +R+ V+ FQ + + +I + AGG GL+ ++A
Sbjct: 1196 LALLRAALDEQNIAYQYLDGSTPPAERKKRVNDFQ-AGTGDLFLISLKAGGTGLNLTAAD 1254
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DRAHR GQ V +Y + T +E
Sbjct: 1255 YVIHLDPWWNPAVEDQASDRAHRIGQDRPVTVYRLVMEGTIEE 1297
>gi|432103390|gb|ELK30495.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A-like protein 1 [Myotis davidii]
Length = 662
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 181 LSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240
L+ +V + + ++ L+ +LPFQ GV F + +GGR L+AD+MGLGKT+QAI IAA +
Sbjct: 434 LTADVPEADLSRVDPKLVSSLLPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFY 493
Query: 241 ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTM 300
+LVV P+ +R +W + +WLP P I++V ++ LT V ++S+ +
Sbjct: 494 RKEWPLLVVVPSSVRFTWEQAFLQWLPSLNPELINVVVTGKDR---LTTG-LVNIVSFDL 549
Query: 301 LHRLRKSMIEQDWALLIV-------------DESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
L +L K + + + ++I+ DESH ++ K +A + + K
Sbjct: 550 LSKLEKQL-KTPFKVVIIDVTLFTYVTVSFQDESHFLKNIKTA----RCRAAMPLLKMAK 604
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV 393
R++LLSGTP++SRP +++ QI + P + + F YCD K V
Sbjct: 605 RVILLSGTPAMSRPAELYTQIIAVKPTFFPQF-HAFGLRYCDAKRV 649
>gi|449466193|ref|XP_004150811.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
[Cucumis sativus]
Length = 1073
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 218/483 (45%), Gaps = 73/483 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSI 246
P + + +QL G+ + +R G ++ADEMGLGKTLQ I++ G
Sbjct: 191 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPH 250
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGH-------RNNPVHLTRFPRVVVISYT 299
+VV P +W E+ R+ P G+ R N + +F V V S+
Sbjct: 251 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPDERRDIRENLLVAGKFD-VCVTSFE 306
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M + + + W +I+DE+H ++ +E + + + R+ L++GTP +
Sbjct: 307 MAIKEKSCLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQN 360
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLL 417
++++ +N L P + + A+T+ + + G Q ++ Q K +R
Sbjct: 361 NLHELWSLLNFLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR-------- 407
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++RRLK + LPPK+ I+++ + + + +A + KD
Sbjct: 408 --PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDL 450
Query: 478 DEHDDSGACCRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAAD 523
+ + G RL I+ Q E G +G S ++
Sbjct: 451 EVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLD--KLL 508
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEV 582
+ R ++++IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E
Sbjct: 509 PKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEK 568
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T
Sbjct: 569 FVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 628
Query: 643 TDE 645
+E
Sbjct: 629 IEE 631
>gi|343083804|ref|YP_004773099.1| SNF2-like protein [Cyclobacterium marinum DSM 745]
gi|342352338|gb|AEL24868.1| SNF2-related protein [Cyclobacterium marinum DSM 745]
Length = 978
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 215/449 (47%), Gaps = 67/449 (14%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFI--SAGSI-LVVCPAILRLSWAEELERWLPFCLPAD 273
G CL AD+MGLGKT+Q +A+ A S G+ L+V P L +W E ++ P
Sbjct: 540 GGCL-ADDMGLGKTVQTLALLAMEKERSEGTTSLLVMPTSLIYNWELEARKFTP---KLK 595
Query: 274 IHLVFG-HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332
I + G R L +V+ SY + + E + +I+DES ++
Sbjct: 596 ILIYTGTQRIKDCRLFERYDLVLTSYGITRLDINILNEFYFNYIILDESQAIK------N 649
Query: 333 PEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
P+ + KAV+ + + K ++L+GTP + D++ Q+N + GLL + F K +
Sbjct: 650 PDSIISKAVIQLKSNHK--LILTGTPVENGTMDLWSQMNFINRGLLA-GQTAFKKQFLLP 706
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE 450
+ + ++ + LN ++K ++ RRLK + LP K
Sbjct: 707 IEKKNDKDKILK----------LNAMIKPFIL-RRLKSQVATDLPEK------------- 742
Query: 451 IVSAKAAVGVINDSEK---DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+V+ K + + D E+ D N K DE LGK + L+ R+
Sbjct: 743 VVNVKYS-SMTPDQEQAYEDVKNYFREKIIDE------ASMLGKSQKSLTLLRGLTQLRQ 795
Query: 508 WLSIHPVIAESDGAADI----DVN-------PRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
++ HP +A+ + A D D++ +K++IF+ +K L V+EF+ ++ I
Sbjct: 796 -MANHPKMADDNYAGDSGKLEDISHMVKSTVSEGHKVLIFSQFVKHLGIVKEFLKDEKIP 854
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
F +DG T+ DRQ V SFQ + +K+ +I + AGGVGL+ + A+ V L+ +P++
Sbjct: 855 FAYLDGATV--DRQKEVASFQENPNIKVFLISLKAGGVGLNLTKAEYVFMLDPWWNPAVE 912
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA DRAHR GQ + V IY F +++ +E
Sbjct: 913 AQAIDRAHRIGQKNKVIIYKFITRNSVEE 941
>gi|193671687|ref|XP_001946103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1-like [Acyrthosiphon pisum]
Length = 848
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 124/519 (23%), Positives = 225/519 (43%), Gaps = 94/519 (18%)
Query: 219 CLIADEMGLGKTLQAIAIAACFISAGSI------LVVCPAILRLSWAEELERWLPFCLPA 272
++ADEMGLGKT+Q IA A G L+V PA +W +E +RW P +
Sbjct: 330 MMLADEMGLGKTVQVIAFLAHLKETGRTHPDLPQLIVVPASTLDNWYQEFKRWCPTMIVE 389
Query: 273 DIHLVFGHRNNPVHLTRFPR-------VVVISYTMLHRL---RKSMIEQDWALLIVDESH 322
H R T++ R V++ +Y+ +K +++ ++ DE+H
Sbjct: 390 KYHGSMDERR--YMRTKWIRKGFGDVDVILTTYSCAANSPEEKKLFKTKEFHYIVYDEAH 447
Query: 323 HVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL-GKA-- 379
++ TS+ EV + + K+ LL+GTP + ++ + L P L GK
Sbjct: 448 KLK--NMTSQTFEVFSNFNGNYKI----LLTGTPLQNNLLELMSLLIFLMPTLFRGKVDN 501
Query: 380 -KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
K+ F+K + T Y+ R+E+ ++ + M+RRLK +L LP K
Sbjct: 502 IKFLFSKGTKN--TGSKYEMH---------RIEQAKRII-EPFMLRRLKADVLKSLPVKT 549
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE------------------- 479
+ +++ + K + D K+AT K D+
Sbjct: 550 LVVNNVVMTEHQ----KTRYNTLVDEIKEATRGKEVTDNSHMMWLMMLRKLTNHPLLLRY 605
Query: 480 HDDSGACCRLGKI-----SYQ---ELGIAKLSGFREWLSIHPVIAE----SDGAADI--- 524
H + G ++ K+ +Y+ E IA+ F +H + + S D+
Sbjct: 606 HFEDGKLYKMAKLLAIEPTYKQKNEQYIAEDLSFLSDFDLHKLCTDYRCLSKLGYDLPIQ 665
Query: 525 ----------------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
D+ R ++++IF+ L++LD ++ ++S G ++R+DG+T ++
Sbjct: 666 MFLDSGKFKLLNEILPDLKDRGHRVLIFSQFLQILDLLEIYMSHYGHSYLRLDGSTQVQE 725
Query: 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
RQ + + + + ++ AGG+G++ ++A V+ ++ +P QAEDR HR GQ
Sbjct: 726 RQLMIDLYNMDESLFAFLLSTKAGGLGINLTAADTVIIHDIDYNPYNDKQAEDRCHRVGQ 785
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
T V + F +KD+ +ES ++ L T G D
Sbjct: 786 TKPVKVIKFISKDSVEESMFKVAQDKLNLEQQVTGGGND 824
>gi|213963570|ref|ZP_03391823.1| Non-specific serine/threonine protein kinase [Capnocytophaga
sputigena Capno]
gi|213953850|gb|EEB65179.1| Non-specific serine/threonine protein kinase [Capnocytophaga
sputigena Capno]
Length = 951
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/505 (25%), Positives = 220/505 (43%), Gaps = 79/505 (15%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQA 233
PE +V+++ +L + P+Q+EGV + L+ G CL AD+MGLGKTLQ
Sbjct: 454 PELKPQNIVEKVTYTPSPNLRATLRPYQVEGVEWLLQHYHNGVGACL-ADDMGLGKTLQT 512
Query: 234 IAIAACF---------------------ISAGSILVVCPAILRLSWAEELERWLP-FCLP 271
IA+ A +LV+ P+ L +W +E +R+ P F
Sbjct: 513 IALLVAIHDTLPLKENNFTDLFSATEPQKEALKVLVILPSSLLFNWYDETKRFAPHFKCT 572
Query: 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
I + LT + VV SY ++ R K + + ++ +I+DES ++ +
Sbjct: 573 QYIGSSSERKTKVRRLTNYD-VVFTSYPIVERDGKELEKLEFRYIILDESQRIKNKNSKT 631
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
KA+ A K + + LSGTP + D++ Q+ + P LG Y F + +V+
Sbjct: 632 ----FKAI--NALKAEHRIALSGTPIENALSDLWAQMQFINPNQLGT--YPFFYKHYEVE 683
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
+ Q LEEL L+ + ++ RR K+ +L LP Q+ + ++
Sbjct: 684 ISKKKNPQ---------ALEELKTLVGKHIL-RRTKEQVLSDLPDIEEQLAYCPMSEAQ- 732
Query: 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511
+ EK ++ + S+ + A L K+ +S
Sbjct: 733 -------AQWYEREKSKVRNQLLEASEPISEFNALQMLTKL--------------RQISN 771
Query: 512 HPVIAESDGAADI-----------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRI 560
HPV+A+++ ++ +K +IF+ +K L+ + + I + ++
Sbjct: 772 HPVLADAESTIPSGKYQEVISYMETLHTAQHKALIFSSFVKHLELFEAWCKTHKIKYSKL 831
Query: 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
G T +R+S V +FQ +V I + AG VGL+ + A V+ L+ +P QA
Sbjct: 832 TGATATHERKSQVEAFQNQEDVSFFFISLKAGEVGLNLTKASYVLLLDPWWNPFSERQAI 891
Query: 621 DRAHRRGQTSAVNIYIFCAKDTTDE 645
RAHR GQ + VN+ F +KD+ +E
Sbjct: 892 ARAHRIGQENKVNVIRFVSKDSIEE 916
>gi|297802844|ref|XP_002869306.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
lyrata]
gi|297315142|gb|EFH45565.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 217/481 (45%), Gaps = 67/481 (13%)
Query: 194 PKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILV 248
P+ L + +QLEG+ F +G ++ADEMGLGKT+Q+IA A + LV
Sbjct: 216 PEFLTGTLHTYQLEGLTFLKHSWSKGTNVILADEMGLGKTIQSIAFLASLFEENLSPHLV 275
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPR-------VVVISYT 299
V P +W E W P + ++ + + H FP+ V++ SY
Sbjct: 276 VAPLSTLRNWEREFATWAPH-MNVVMYTGTSEARDVIWEHEFYFPKGRKIKFDVLLTSYE 334
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
M+++ + W +IVDE H ++ SK S + + K VLL+GTP
Sbjct: 335 MINQDTSVLKPIKWTCMIVDEGHRLKNKDSKLYSSLNQFTS--------KHRVLLTGTPL 386
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
+ ++F ++ L D K +++ +Q + F+D ++ ++ L+ +L
Sbjct: 387 QNNLDELFVLMHFL----------DAVK----FASMENFQKE-FKDINQEKQISRLHQML 431
Query: 418 KQTVMIRRLKQHLLV-QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
++RRLK+ +L ++PPK+ I+R+ L + KA VI ++ + T + K
Sbjct: 432 APH-LLRRLKKDVLKDKMPPKKELILRVDLSSQQKEVYKA---VITNNYQVLTKKRGAKI 487
Query: 477 SDEHDDSGACC-----------RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
S+ D C RL + + + SG + L V + G
Sbjct: 488 SNVLMDLRKVCSHPYLLKDVEPRLEDANEAFTKLLEASGKLQLLDKMMVKLKEQG----- 542
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
++++I++ LD Q++ S K + RIDG +RQ+++ F N +
Sbjct: 543 -----HRVLIYSQFQHTLDLFQDYCSFKSWKYERIDGKVGGAERQASIDRFNAENSNRFC 597
Query: 586 IIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+ T AGG+G++ ++A V+ + +P LQA RAHR GQT+ V IY + T +
Sbjct: 598 FLLTTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLIHRATVE 657
Query: 645 E 645
E
Sbjct: 658 E 658
>gi|395328851|gb|EJF61241.1| hypothetical protein DICSQDRAFT_106351 [Dichomitus squalens
LYAD-421 SS1]
Length = 1088
Score = 121 bits (303), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 134/510 (26%), Positives = 214/510 (41%), Gaps = 90/510 (17%)
Query: 203 PFQLEGVRF------GLRR--GGRCLIADEMGLGKTLQAIAIAACFIS----------AG 244
P Q EGV+F GLR+ G C++ADEMG+GKTLQ I + + G
Sbjct: 394 PHQKEGVQFLYECVMGLRKHEGQGCILADEMGMGKTLQTITLVWTLLKQNPYAGAGSVVG 453
Query: 245 SILVVCPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISY 298
+L+VCP L +W E +WL F D + + N+ H +V++I Y
Sbjct: 454 KVLIVCPVSLINNWKTEFHKWLGRDRIGIFTGDKDKNTIKQFLNSKTH-----QVLIIGY 508
Query: 299 TMLHRLRKSMIEQDW-----ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
RLR + + + L+I DE H ++ + + + D A + R V+LS
Sbjct: 509 ---ERLRTVISDLAYCQPPIGLIICDEGHRLKSAN-----NKTSTMFD-ALRTPRRVILS 559
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP + + + PGLL Y K V Y+ + + + G +E
Sbjct: 560 GTPIQNELSEFHAMADFCNPGLL--------DDYSTFKRV--YETPILKSRAPGCSAKEA 609
Query: 414 NV---------LLKQTVMIRRLKQHLLVQLPPKRRQII-----RLLLKRSE-IVSAKAAV 458
+ + ++ ++RR L LPPK ++ +L L E I+S
Sbjct: 610 ELGEARSAQLSTIARSFVLRRDATILKKYLPPKHEYVVFVTPTKLQLSIFEKILSHDKLD 669
Query: 459 GVINDS--EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIA 516
++ +S E A + K S+ A K+ QE K + E L + P A
Sbjct: 670 SLVRNSTAESLALINILTKISNSPILLKATADQAKLKGQEGADVKRNAIEEALQLLPERA 729
Query: 517 ESDGAADIDVNPR---------------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
+ + D+ ++ + K II +H+ L+ ++ + K + R+D
Sbjct: 730 QIE---DVSLSGKLSALATLLRALRKHTEEKCIIVSHYTSTLNIIEAYCKTKSYTYHRLD 786
Query: 562 GNTLPRDRQSAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
GNT RQ V+ F S++ K I ++ AGGVGL+ A + ++ +PS LQ+
Sbjct: 787 GNTPAPKRQEYVNDFNRSSQAKRFIFLLSSKAGGVGLNLIGASRLCLIDSDWNPSHDLQS 846
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
R HR GQ V IY F DE +Q
Sbjct: 847 MARIHRDGQKRPVYIYRFLTTGAIDEKIYQ 876
>gi|255038325|ref|YP_003088946.1| Non-specific serine/threonine protein kinase [Dyadobacter
fermentans DSM 18053]
gi|254951081|gb|ACT95781.1| Non-specific serine/threonine protein kinase [Dyadobacter
fermentans DSM 18053]
Length = 982
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/481 (25%), Positives = 216/481 (44%), Gaps = 81/481 (16%)
Query: 194 PKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS---I 246
P ++ P+Q G +RF R G CL AD+MGLGKT+Q +A+ G+
Sbjct: 517 PHHFQGILRPYQKTGYDWLRFLKQYRFGGCL-ADDMGLGKTVQTLALLQSEKEGGADRPS 575
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPR--VVVISYTMLHR 303
+++ P L +W E ++ P D+ L++ N +F +++ SY ++
Sbjct: 576 ILIMPTSLLYNWQLEASKFTP-----DLRVLLYTGTNREKDTAQFDHYDLILTSYGIIRL 630
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTPSL 358
M + + +I+DES ++ P + + V+R+ ++L+GTP
Sbjct: 631 DIDLMEDYRFNYVILDESQAIK------NPSSI-----ITKAVRRLNSAHRLVLTGTPIE 679
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ D++ Q++ + PGLLG + F + +G D K RL L
Sbjct: 680 NNTLDLWSQMSFVNPGLLGSQTF-FRDEFQVPIEKKG-------DEEKTKRLYNL----I 727
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
+ ++RRLK + LP K V I + +K +++
Sbjct: 728 KPFILRRLKSQVATDLPEK--------------------VESIQYCDMSGEQEKAYEEAK 767
Query: 479 EHDDSGACCRL---GKISYQELGIAKLSGFREWLSIHPVIAESDGAADI----------- 524
+ + + G Q + + L+ R+ L+ HPV+ + + A D
Sbjct: 768 AYYRNLILQSIDSEGMSKSQLVVLQGLTRLRQ-LANHPVMVDPEYAHDSGKFEDVLYKLQ 826
Query: 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584
V +K++IF+ ++K LD + ++ EK I + +DG T RDRQ V SFQ +KI
Sbjct: 827 TVMSEDHKILIFSQYIKHLDLFRHYLDEKEINYAYLDGAT--RDRQEQVESFQNDENIKI 884
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
+I + AGG+GL+ ++A V L+ +P++ QA DRAHR GQ V Y F K++ +
Sbjct: 885 FLISLKAGGLGLNLTAADYVFILDPWWNPAIEAQAVDRAHRIGQDRTVFTYKFITKNSVE 944
Query: 645 E 645
E
Sbjct: 945 E 945
>gi|357404090|ref|YP_004916014.1| helicase [Methylomicrobium alcaliphilum 20Z]
gi|351716755|emb|CCE22417.1| putative helicase [Methylomicrobium alcaliphilum 20Z]
Length = 1017
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 46/456 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF---ISAGSILVVCPAILRLS 257
+ P+Q EGV F RG R L+AD+MGLGKTLQAI A+ + +L+VCPA L+
Sbjct: 311 LFPYQSEGVAFLASRG-RALLADDMGLGKTLQAITAASWMADNLGIRRVLIVCPASLKSQ 369
Query: 258 WAEELERWLPFCLPADIHLVFG-HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ-DWAL 315
WA E+E++ +V G N VH +++Y ++ R + E L
Sbjct: 370 WAREIEKFTSH----GARIVQGPAENRSVHYRADALFFIVNYELILRDLSVITETLKPDL 425
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+I+DE+ ++ + RT VK + + + +LSGTP +R D++ + ++ +
Sbjct: 426 VILDEAQRIK-NWRTKIASSVKLI-----PSRYVFVLSGTPLENRLEDLYSLLQVIDARV 479
Query: 376 LG---KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
LG + DF T K + GY+ L EL + VM+RR + +
Sbjct: 480 LGPLWRCLLDFHVTDERGKVI-GYRN-----------LSELRRRIA-PVMLRRNRSLVSD 526
Query: 433 QLPPKR--RQIIRLLLKRSEI-VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
QLP + R I + L++ E+ SA +A G I K + P E + A +
Sbjct: 527 QLPDRTEVRMDIPMTLQQIELHGSALSAAGYIAQIAK-----RRPLTPSEQNRFMAALQQ 581
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
+++ G+ + P + E G + S K +IF+ + + V+
Sbjct: 582 ARMACNAAGLVD-----KETEGSPKLDEMVGILEEICLESSRKAVIFSQWALMTEMVEAK 636
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ G+G VR+ G R + F+ + V++ I AGG GL+ SA ++ L++
Sbjct: 637 VRAMGLGCVRLHGGVPSEKRGELMERFEKDDSVQV-FISTDAGGTGLNLQSATVLINLDM 695
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P +P+++ Q R HR GQ V I++ A+D+ ++
Sbjct: 696 PWNPAILDQRIARIHRLGQKQNVLIFLLLAEDSYEQ 731
>gi|410624761|ref|ZP_11335551.1| helicase [Glaciecola mesophila KMM 241]
gi|410155607|dbj|GAC22320.1| helicase [Glaciecola mesophila KMM 241]
Length = 1433
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/482 (26%), Positives = 221/482 (45%), Gaps = 62/482 (12%)
Query: 187 DEMIGKLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFIS 242
+E+ ++P + + +Q G + R G CL AD+MGLGKTLQA+AI S
Sbjct: 952 NEITPQIPSTFQAQLRDYQQVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRAS 1010
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPRVVV 295
AG LV+ P + +W +E ++ P +I L F N + L F V+
Sbjct: 1011 AGPSLVIAPTSVCFNWQQEALKFAP---TLNIKL-FADSTNTLQREVLLNDLGPFD-CVI 1065
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
ISY +L R + + W ++ DE+ ++ +KRT KA + + K I +
Sbjct: 1066 ISYGLLQRESEILKGVHWHSIVADEAQALKNPLAKRT------KAAYALKSDFKMIT--T 1117
Query: 354 GTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP +L+ + +F IN PGLLG K + ++ + +D +
Sbjct: 1118 GTPIENNLTELWSLFRFIN---PGLLGNIKRFGQRFSVPIENAK-------EDPLAARKA 1167
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS-- 464
+ L Q ++RR+K +L +LP + IR+ + E +A A+ I+ S
Sbjct: 1168 SQALKTLIQPFILRRMKNQVLTELPSRTEINIRVEMSSQERDFYEALRLNAIDNISQSGQ 1227
Query: 465 EKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI 524
+ +A + ++ ACC K+ E I P + +
Sbjct: 1228 QANAGEQRIRMLAELVKLRQACCN-SKLVMAETTI-------------PSAKLAALDELL 1273
Query: 525 DVNPRSN-KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+ +N K +IF+ + L +++ + KG + +DG+T + RQ++V++FQ E
Sbjct: 1274 EELRLNNHKALIFSQFVGHLQLIKQHVEAKGFSYQYLDGSTPQKQRQASVNAFQ-GGEGD 1332
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
I +I + AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V +Y ++T
Sbjct: 1333 IFLISLKAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTVYRLITQNTI 1392
Query: 644 DE 645
+E
Sbjct: 1393 EE 1394
>gi|300797826|ref|NP_001178272.1| DNA excision repair protein ERCC-6 [Bos taurus]
Length = 1481
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/503 (23%), Positives = 219/503 (43%), Gaps = 60/503 (11%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD DE K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 479 SDAEFDEGF-KMPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 535
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV--FGH 280
A F G ++VCP + W +E W P A +H F H
Sbjct: 536 LAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGSFTH 595
Query: 281 RNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
+ + + R +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 596 KKEKLVRDIARCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR---------NPNA 646
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 647 AVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGG 705
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--RLLLKR 448
Y + +L+ T+ ++RR+K + + LP K Q++ RL ++
Sbjct: 706 YSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 762
Query: 449 SEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKL 502
++ + +K ++N + + + H D SG L I +ELG +
Sbjct: 763 HKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGEDQF 822
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDG 562
++ S ++ ES + + ++++F+ ++LD ++ F+ + ++++DG
Sbjct: 823 GYWKR--SGKMIVVESLLKI---WHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDG 877
Query: 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR 622
T RQ + + + + ++ GG+G++ + A V+ + +PS QA +R
Sbjct: 878 TTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARER 937
Query: 623 AHRRGQTSAVNIYIFCAKDTTDE 645
A R GQ V +Y T +E
Sbjct: 938 AWRIGQKKQVTVYRLLTAGTIEE 960
>gi|390603934|gb|EIN13325.1| hypothetical protein PUNSTDRAFT_78819 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1452
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 110/462 (23%), Positives = 205/462 (44%), Gaps = 61/462 (13%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ I G LV+ P +W+ E +W P
Sbjct: 608 ILADEMGLGKTIQTISLITFLIEVKKQRGPYLVIVPLSTMTNWSGEFAKWAPSVK----- 662
Query: 276 LVFGHRNNP---------VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326
+ ++ NP + + +F +V++ +Y + + R + + W +I+DE H ++
Sbjct: 663 -MISYKGNPAQRRALQNEIRMGQF-QVLLTTYEYIIKDRPILSKIKWVHMIIDEGHRMKN 720
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
++ ++ L + ++L+GTP + +++ +N + P K
Sbjct: 721 TQ-----SKLAVTLTTYYHSRYRLILTGTPLQNNLPELWALLNFVLP-----------KV 764
Query: 387 YCDVKTVQGYQGQLFQDFSKG--VRLEELNVLL--------KQTVMIRRLKQHLLVQLPP 436
+ VK+ + F + G + L E LL + ++RRLK+ + +LP
Sbjct: 765 FNSVKSFDEWFNTPFANSGTGDKIELNEEEALLIIRRLHKVLRPFLLRRLKKDVESELPD 824
Query: 437 KRRQIIRLLLK--RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
K ++I++ + +S++ +I D ND K S +L KI
Sbjct: 825 KVEKVIKVKMSALQSQLYKQMKKYKMIADG-----NDAKGKGGGVKGLSNELMQLRKICQ 879
Query: 495 QELGIAKLSG-FREWLSIHPVIAESDGAADI--DVNPR----SNKMIIFAHHLKVLDGVQ 547
+ I+ + + G ++ + P+ ++++IF KV+D ++
Sbjct: 880 HPFLFESVEDKLNPTGQINDSLIRTSGKIELLARILPKLFATGHRVLIFFQMTKVMDIME 939
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVF 606
+F+ G +R+DG T +R V F N E + I+ AGG+GL+ SA V+
Sbjct: 940 DFLRYMGWKHLRLDGGTKTEERAGHVAKFNAPNSEYLVFILSTRAGGLGLNLQSADTVII 999
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+ +P LQA+DRAHR GQT AV I F + + +E+ +
Sbjct: 1000 FDSDWNPHADLQAQDRAHRIGQTKAVRILRFITEKSVEEAMY 1041
>gi|156839119|ref|XP_001643254.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113856|gb|EDO15396.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 849
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 147/653 (22%), Positives = 280/653 (42%), Gaps = 126/653 (19%)
Query: 159 NVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLD--VILPFQLEGVRFGL--- 213
N+++ +T + P+ +E I ++ +LL + P+QLEG+ + +
Sbjct: 176 NILDFFKGGKETDKKEEVNPDLNKINTEEERISQVQPNLLKNCTLKPYQLEGLNWLITLY 235
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRLSWAEELERWLPFC 269
G ++AD+MGLGKT+Q+IA+ A FI + G L+ P +W E +R+ P
Sbjct: 236 ENGLNGILADDMGLGKTIQSIALLA-FIYEMDTKGPFLIAAPLSTVDNWISEFDRFAP-D 293
Query: 270 LPADIHLVFGHRNNPVH----LTRFPR------VVVISYTMLHRLRKSMIEQDWALLIVD 319
+P L + H+ P + +F + VV+ SY ++ R ++ + W LIVD
Sbjct: 294 VPV---LKYYHQGGPKERGKLMNKFFKKTNGTGVVITSYEIIIRDADQIMAKQWKFLIVD 350
Query: 320 ESH---HVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTPSLSRPYDIFHQINML 371
E H ++ C + ++KRI +LL+GTP + +++ +N +
Sbjct: 351 EGHRLKNINCK--------------LIQELKRINTSNRLLLTGTPLQNNLSELWSLLNFI 396
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQ-----GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
P + A ++ + D K + +L D + + L+ +LK ++RRL
Sbjct: 397 LPDIF--ADFEIFNKWFDFKELNLQSDSSKLNKLINDELEKNLISNLHTILK-PFLLRRL 453
Query: 427 KQHLLVQ-LPPKRRQII-------------------------RLLLKRSEIVSAKAAVGV 460
K+ +L LPPKR +I + L+K+ ++ K V
Sbjct: 454 KKTVLADILPPKREYLINCTMTSSQKKLYKRALSGQLKVTIFKELVKQFFTLNTKHIGHV 513
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKIS--YQELGIAKLSGFR------------ 506
N S +D N + ++ D + S L K+ Y+E A+L +
Sbjct: 514 SNKSIRDFINYELSEEDDNENISEEPETLQKMQKIYEEYMHAELKNKKLQNMMMQLRQIV 573
Query: 507 --EWLSIHPVIAESDGAADIDVNP----------------RSNKMIIFAHHLKVLDGVQE 548
+L P + + D+ + + +K+++F+ +LD +++
Sbjct: 574 DSTFLFYFPYLNPEEMTLDVLLQTSGKLQTMQDLILPLVKKKHKVLVFSQFTNMLDLLED 633
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ + RIDG R+ + F + ++ I ++ A G+G++ +A VV
Sbjct: 634 WCELNSLESFRIDGTIDSESRKEQIEQFNKPGDKHNIFLLSTRAAGLGINLIAADTVVLF 693
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE---SHWQNLNKSLRCVSSATNG 664
+ +P + LQA DR +R GQ V +Y C +T + + N K + V G
Sbjct: 694 DSDWNPQVDLQAMDRCYRIGQIKPVVVYRLCCDNTVEHVILTRAANKRKLEKMVIQM--G 751
Query: 665 KYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEAS 717
+++ L+++A+ S+L G + ++V++ D QEL ++ S E+S
Sbjct: 752 RFNTLKKLALNEGSFL--------GQQFGNSNKVSNKDLVQELSQLLGSGESS 796
>gi|289650008|ref|ZP_06481351.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 650
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/486 (26%), Positives = 222/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K + ++ Q G+R L+R L+AD MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKAVEKF--SLMGHQPAGIRHLLQRTS-ALLADHMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I + F + +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIAMQTFDAQAD---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRTEIADWMLRR-------RKDVLPNLKGKQRQTVPVIL---------------SQVE 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N SD+H A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIM--RSDQHR-----------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E + GIG V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|289628760|ref|ZP_06461714.1| SNF2-related:helicase, C-terminal, partial [Pseudomonas syringae
pv. aesculi str. NCPPB 3681]
Length = 602
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 209/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 198 LMDHQPAGIRHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 256
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N + + R + ++H R +A++++DE
Sbjct: 257 EILMVFP---QAQIAMQTFDANAGWIIVNYER---LGDFVMHANR-------FAVMVIDE 303
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 304 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 356
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 357 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLKGKQ 399
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L E +D N SD+H
Sbjct: 400 RQTVPVILSLVE---------------RDEYNQIM--RSDQHR----------------- 425
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 426 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKMGVGCV 482
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 483 TLIGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 542
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 543 AEDRAYRNGQLRVVVVKIPLAEDTIDQQLWQML 575
>gi|289625868|ref|ZP_06458822.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
Length = 652
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 208/454 (45%), Gaps = 79/454 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMGHQPAGIRHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHL-VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E+ P A I L F + + ++++Y L + +A++++D
Sbjct: 305 EILMVFP---EAQIALQTFDAQAD---------WIIVNYERLGDFVRH--AGCFAVMVID 350
Query: 320 ESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G
Sbjct: 351 EAH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIG 403
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ + +C + + G +F K +R E + +L++ ++ +L L K
Sbjct: 404 QLPLN---EFC-----ERFAGS--PEFRKTLRAEIADWMLRR-------RKDVLPNLQGK 446
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ + ++L + E +D N D+
Sbjct: 447 QRQTVPVILSQVE---------------RDEYNQIMRSDTHR------------------ 473
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
A+L R+ L V +D A++DV+ +K+I+F + + + ++E G+G
Sbjct: 474 -FARLGALRQLLERVKVRIVADLMAELDVD---DKVILFCEYQESVASLREHCLAMGVGC 529
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L
Sbjct: 530 VTLVGSDSPKKRQKAIDAFQQDQDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQD 589
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
QAEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 590 QAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|356549071|ref|XP_003542921.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
isoform 1 [Glycine max]
Length = 1069
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 69/481 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 197 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLG 256
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M + + ++
Sbjct: 257 NWMNEIRRFCPILRAIKF---LGNPDERRHIRDELLVAGKFD-VCVTSFEMAIKEKSALR 312
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 313 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQNNLHELWSLLN 366
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + A+ T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 367 FLLPEIFSSAE-----TFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 411
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + +A + KD + + G
Sbjct: 412 SDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERK 456
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMII 535
RL I+ Q + P D + + R ++++I
Sbjct: 457 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLI 516
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 517 FSQMTRLLDILEDYLVFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGL 576
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E + K
Sbjct: 577 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 636
Query: 655 L 655
L
Sbjct: 637 L 637
>gi|401825857|ref|XP_003887023.1| Snf2-like DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392998180|gb|AFM98042.1| Snf2-like DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 1256
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 202/458 (44%), Gaps = 57/458 (12%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAI--AACFISAGSILVVCPAILRLSW 258
+Q+EGV+ F ++AD+MGLGKTLQ + + + + +LV+CP+ L W
Sbjct: 800 YQMEGVKWLNFLHSFNLNGILADDMGLGKTLQVLTFLCSEIYKTNKKVLVICPSSLTGHW 859
Query: 259 AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIV 318
E++++ PF + A+I+ G + ++ SY + IE+DW ++V
Sbjct: 860 KAEVKKFFPF-ITAEIYKREGKSKGDL--------LISSYETFRNDYLNFIEKDWFYVVV 910
Query: 319 DESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
DE H +R +K+T + + K R ++L+GTP + D+ N L P +G
Sbjct: 911 DEGHVLR-NKQTILYSRMNMI-----KCPRKIVLTGTPVHNSVEDLVSLFNFLMPNYIGS 964
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLLVQLPP 436
K ++ + ++ + Q E+LN+L ++ + ++RRLK +L LPP
Sbjct: 965 EK-EYGSLNVKMSDIEIEKTQ-----------EKLNLLHRKVLPFVLRRLKIDVLKDLPP 1012
Query: 437 K--RRQIIRL------LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
K R + L L + + K G I D E + K D A
Sbjct: 1013 KIIRDITVELGPVQEKLYREIDEKGGKEGAGDI-DLEYGKVDQKNMGFKRTKDLFLAVSH 1071
Query: 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
+G K+ + +S+ G D+ +K++IF +D V +
Sbjct: 1072 IGHFKSSSEVSCKVKALEDIISLC-------GGEDL-----RSKILIFFQFKSSIDLVIK 1119
Query: 549 FISEK-GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
I EK + R+DG+ R F + +I + GG+GL+ + A VV
Sbjct: 1120 DIMEKYKFKYSRLDGSVPSSARAKIAEEFN-TGTTQILFLTTQVGGLGLNLTGADTVVMY 1178
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
E +P LQA DRAHR GQ VN++ AK+T +E
Sbjct: 1179 EHDWNPFNDLQAMDRAHRIGQKRTVNVFRLIAKNTLEE 1216
>gi|406603793|emb|CCH44714.1| TATA-binding protein-associated factor [Wickerhamomyces ciferrii]
Length = 1887
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 221/515 (42%), Gaps = 79/515 (15%)
Query: 193 LPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC--------FI 241
LP ++ + +Q EGV F + ++ D+MGLGKTLQ I I A +
Sbjct: 1283 LPVAIDATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVASDHHLRAEDYK 1342
Query: 242 SAGSI-------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF-PR- 292
SI L++CP L W +E ++ PF V + P + P+
Sbjct: 1343 VTKSIETAPLPTLIICPPSLTGHWEQEFNQYSPFLK------VVVYAGGPSFRSGIRPQL 1396
Query: 293 ----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKV 346
++V SY ++ + + +D+ ++DE H ++ SK T + V++
Sbjct: 1397 NSCDIIVTSYDVVRNDVEFLSAKDYNYCVLDEGHIIKNAASKLTKSVKRVRS-------- 1448
Query: 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406
++LSGTP + +++ + L PG LG K + + + + + +
Sbjct: 1449 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGSEKLFQERFARPIAASRNSKTSSKEQEAG 1508
Query: 407 GVRLEELNVLLKQTV--MIRRLKQHLLVQLPPK-----------------------RRQI 441
+ LE L+ KQ + M+RRLK+ +L LPPK ++ I
Sbjct: 1509 ALALEALH---KQVLPFMLRRLKEEVLSDLPPKIIQDYYCQLSDLQKQLYKDFAKKQKTI 1565
Query: 442 IRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD---DSGACCRLGKISYQELG 498
+ ++ E+ K + + N + S+ H + R ++S ++
Sbjct: 1566 VENDIQTVEVAEKKTHIFQALQYMRKLCNHPSLVLSESHPQYYEVQKYLRDTRMSIHDIH 1625
Query: 499 IA-KLSGFREWL---SIHPVIAESDGAADIDVNPRS-NKMIIFAHHLKVLDGVQEFISEK 553
A KL R L I E +A N S ++ ++F +LD V+ + +K
Sbjct: 1626 HAPKLMALRTLLLECGIGTADVEKSNSAQNTGNVISQHRALVFCQLKDMLDMVENDLLKK 1685
Query: 554 ---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+ F+R+DG+T PRDRQ V F + + ++ GG+GL+ + A V+F+E
Sbjct: 1686 YLPSVSFMRLDGSTDPRDRQGIVRKFNEDPSIDVLLLTTKVGGLGLNLTGADTVIFVEHD 1745
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P LQA DRAHR GQ VN+Y KDT +E
Sbjct: 1746 WNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEE 1780
>gi|356549073|ref|XP_003542922.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
isoform 2 [Glycine max]
Length = 1062
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 69/481 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 190 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLG 249
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M + + ++
Sbjct: 250 NWMNEIRRFCPILRAIKF---LGNPDERRHIRDELLVAGKFD-VCVTSFEMAIKEKSALR 305
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 306 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQNNLHELWSLLN 359
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + A+ T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 360 FLLPEIFSSAE-----TFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 404
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + +A + KD + + G
Sbjct: 405 SDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERK 449
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMII 535
RL I+ Q + P D + + R ++++I
Sbjct: 450 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLI 509
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 510 FSQMTRLLDILEDYLVFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGL 569
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E + K
Sbjct: 570 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 629
Query: 655 L 655
L
Sbjct: 630 L 630
>gi|257486838|ref|ZP_05640879.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 650
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 220/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K + ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKAVEKF--SLMGHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F + +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAD---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRAEIADWMLRR-------RKDVLPNLQGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N D+ A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIMRSDTHR-------------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E G+G V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|255551667|ref|XP_002516879.1| helicase, putative [Ricinus communis]
gi|223543967|gb|EEF45493.1| helicase, putative [Ricinus communis]
Length = 1064
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/473 (23%), Positives = 216/473 (45%), Gaps = 73/473 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKF---LGNPDERRHIREELLVAGKFD-VCVTSFEMAIKEKSALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQNNLHELWSLLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + +A + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERK 451
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSRV 509
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AG
Sbjct: 510 LIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAG 569
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 622
>gi|289647486|ref|ZP_06478829.1| SNF2-related:helicase, C-terminal, partial [Pseudomonas syringae
pv. aesculi str. 2250]
Length = 564
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 209/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 160 LMDHQPAGIRHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 218
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N + + R + ++H R +A++++DE
Sbjct: 219 EILMVFP---QAQIAMQTFDANAGWIIVNYER---LGDFVMHANR-------FAVMVIDE 265
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 266 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 318
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 319 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLKGKQ 361
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L E +D N SD+H
Sbjct: 362 RQTVPVILSLVE---------------RDEYNQIM--RSDQHR----------------- 387
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 388 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKMGVGCV 444
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 445 TLIGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 504
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 505 AEDRAYRNGQLRVVVVKIPLAEDTIDQQLWQML 537
>gi|224110590|ref|XP_002315568.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222864608|gb|EEF01739.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 1050
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 213/481 (44%), Gaps = 69/481 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSI 246
P + + +QL G+ + +R G ++ADEMGLGKTLQ I++ G
Sbjct: 176 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLQEFRGITGPH 235
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYT 299
+VV P +W E+ R+ P G+ + H+ +F V V S+
Sbjct: 236 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPDERKHIREELLAAGKFD-VCVTSFE 291
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M + + ++ W +I+DE+H ++ +E + + + R+ L++GTP +
Sbjct: 292 MAIKEKSTLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQN 345
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLL 417
++++ +N L P + + A+T+ + + G Q ++ Q K +R
Sbjct: 346 NLHELWALLNFLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR-------- 392
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++RRLK + LPPK+ I+++ + + + KA + KD
Sbjct: 393 --PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDL 435
Query: 478 DEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD------------GAADID 525
+ + G RL I+ Q + P + D
Sbjct: 436 EVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLVTNAGKMVLLDKLLPK 495
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
+ R ++++IF+ ++LD +++++ +G + RIDGNT DR +++ +F K
Sbjct: 496 LKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFC 555
Query: 586 -IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +
Sbjct: 556 FLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 615
Query: 645 E 645
E
Sbjct: 616 E 616
>gi|403414793|emb|CCM01493.1| predicted protein [Fibroporia radiculosa]
Length = 1441
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 117/483 (24%), Positives = 212/483 (43%), Gaps = 89/483 (18%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
FQL G+ + +G ++ADEMGLGKT+Q ++ + G LV+ P
Sbjct: 385 FQLTGLNWLAYLWSKGENGILADEMGLGKTVQTVSFLSYLFHEMRQYGPFLVIVPLSTIT 444
Query: 257 SWAEELERWLP-------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
+W + W P A ++ G+ P + V++ +Y + R K +
Sbjct: 445 AWQSQFATWAPDLNVITYIGTAAAREVIRGYEFGPSNKKLRMNVLLTTYEITLRDSKELG 504
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ W +L VDE+H ++ SE + +A+ +A K +L++GTP + ++ ++
Sbjct: 505 DIKWQVLSVDEAHRLK----NSESQLYEALRSFSAASK--LLITGTPLQNNVKELLSLMH 558
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L P K+ + + D +++EL+ L +++M+RRLK+
Sbjct: 559 FLMP-----EKFHLSNEFD------------LTDVDHEEKIKELHKQL-ESLMLRRLKRD 600
Query: 430 LLVQLPPKRRQIIRL------------LLKRSEIVSAKAAVGVINDS-------EKDATN 470
+L +LP K +I+R+ +L ++ K+A G N S K A N
Sbjct: 601 VLTELPTKSERILRVEMSGLQTHFYKNILTKNFQGLVKSANGNNNISLLNIAMELKKAAN 660
Query: 471 D-------KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+T D++E G GK+ + +A+L DG
Sbjct: 661 HPYLFDGAETKTDNEEETLKGLVMSSGKMVLLDKLLARL--------------RQDG--- 703
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
++++IF+ +++LD + +++ +G R+DG R+ A+ F
Sbjct: 704 -------HRVLIFSQMVRMLDILTDYMVMRGYQHQRLDGMISSELRKKAIAHFNSPGSTD 756
Query: 584 IA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
A ++ AGG+G++ +A V+ + +P LQA RAHR GQ S V++Y F +KDT
Sbjct: 757 FAFLLSTRAGGLGINLETADTVIIFDSDWNPQNDLQAMARAHRIGQKSHVSVYRFVSKDT 816
Query: 643 TDE 645
+E
Sbjct: 817 MEE 819
>gi|407407107|gb|EKF31071.1| transcription activator, putative [Trypanosoma cruzi marinkellei]
Length = 843
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 126/471 (26%), Positives = 211/471 (44%), Gaps = 62/471 (13%)
Query: 204 FQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QLEGV++ L G C++AD+MGLGKT Q A + +I L+V P
Sbjct: 144 YQLEGVQYLLNNFHSGSSCILADDMGLGKTAQISAFLHLLKTQHTIDGPHLIVSPLSTLT 203
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNN--PVHLTRFPR--VVVISYTMLHRLRKSMIEQD 312
W EL RW P H G R + TR R V V + +L++ R ++
Sbjct: 204 GWTRELARWAPTLRVVKYH---GERKGRASIRKTRGNRHCVFVTTPAVLNQDRGFFRKRA 260
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
W + ++DE+H ++ R + V L ++ ++GTP + +++ +N L+
Sbjct: 261 WVVAVIDEAHVLK--GRDTIISYVARKLTACFRLA----VTGTPVHNSVSEVWSLMNFLY 314
Query: 373 PGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
P A YD + D T +D +K L Q VM+RR K + +
Sbjct: 315 PSYC--ASYDNSGDDNDPITAA-------EDCAK----------LLQYVMLRRTKGSIEL 355
Query: 433 QLPPKRRQ---IIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC-- 487
+PP+ + +I + +++S + +N + +AT +T CC
Sbjct: 356 GIPPRVDEPTCMIEPTRLQWQLLS-RMTEQALNGDKSNATRLQTHFTHQRI----VCCHP 410
Query: 488 ---RL----GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR-----SNKMII 535
RL G+ S Q +L+ L +IA S ++D R ++ +I
Sbjct: 411 LALRLLGVEGRTSAQSGWEERLASAGIELDEASIIAPSAKMIELDRKLREFKENGHRCLI 470
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGV 594
F++ +LD +Q +G GF RIDG+T +R+ ++ F + + ++ TAGGV
Sbjct: 471 FSNFTSILDLLQALCVLRGYGFERIDGSTPRVERELSMIRFNAPGSACFVFLLTTTAGGV 530
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G+ + A V+ + +P + QA DRAHR GQT V ++ C K+T +E
Sbjct: 531 GVTLTGADTVILFDAHYNPQIDRQAADRAHRIGQTRVVRVHRLCLKNTIEE 581
>gi|313112827|ref|ZP_07798474.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624897|gb|EFQ08205.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
Length = 1100
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 215/470 (45%), Gaps = 61/470 (12%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS--- 245
P+SL +V+ +Q +G R+ G GG ++AD+MGLGKT+Q ++ G
Sbjct: 635 PESLHNVLRKYQRDGYRWLRTLDGYGMGG--ILADDMGLGKTVQVLSYLLAMKERGQRLP 692
Query: 246 ILVVCPAILRLSWAEELERWLP--FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
L+VCPA L L+W EE +++ P C+ D HR +VV SY ++ R
Sbjct: 693 SLIVCPASLVLNWQEECQKFTPQLSCVAVDGDAA--HRAELAKQWAEADLVVTSYDLMRR 750
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ Q + I+DE+ ++ ++ KAV V +KV+ L+GTP +R +
Sbjct: 751 DEELYNGQQFYACILDEAQAIK----NHTTQKYKAVCGVNSKVR--FALTGTPVENRLGE 804
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ + L PG L K T+C ++ + Q+ K L LN L ++
Sbjct: 805 LWSIFSFLMPGYLPPYK-----TFC-----ARFEKPIVQEDDKDA-LRRLNQL-TGPFIL 852
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR+K +L +LPPK + R+ L + AAV ++ EK + K D+
Sbjct: 853 RRMKSEVLKELPPKTENLHRIELDEQQRKLYLAAV--VDAREKL----RAAKPEDKMAVF 906
Query: 484 GACCRLGKI--------SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
RL +I + G AKL E V A +G +++++
Sbjct: 907 AVLMRLREICCDPRLVADNWDGGSAKLDACMEL-----VTAAVEGG---------HRILL 952
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ +L+ + + + E G+ + G+T R V F S E + +I + AGG G
Sbjct: 953 FSQFTSMLELLAKRLDEAGVSHFTLQGSTPKPVRAELVRRFN-SGEADVFLISLRAGGTG 1011
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ ++A V+ + + + QA DRA+R GQ + V +Y A+DT +E
Sbjct: 1012 LNLTAADIVIHYDPWWNVAAQNQATDRAYRIGQRNPVQVYKLIAQDTIEE 1061
>gi|356555543|ref|XP_003546090.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
isoform 1 [Glycine max]
Length = 1072
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 69/481 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 200 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLG 259
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M + + ++
Sbjct: 260 NWMNEIRRFCPVLRAIKF---LGNPDERRHIRDELLVAGKFD-VCVTSFEMAIKEKSALR 315
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 316 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQNNLHELWSLLN 369
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + A+ T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 370 FLLPEIFSSAE-----TFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 414
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + +A + KD + + G
Sbjct: 415 SDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERK 459
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMII 535
RL I+ Q + P D + + R ++++I
Sbjct: 460 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLI 519
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 520 FSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGL 579
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E + K
Sbjct: 580 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 639
Query: 655 L 655
L
Sbjct: 640 L 640
>gi|330936688|ref|XP_003305493.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
gi|311317475|gb|EFQ86421.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
Length = 890
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 141/580 (24%), Positives = 252/580 (43%), Gaps = 99/580 (17%)
Query: 154 PWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKS--LLDVIL--------- 202
P ++ V+ + + SI R +P H+ + ++ + PK ++DV++
Sbjct: 193 PLLSNTVMPQRNLSIPQPRHDP----HVPNALIMKRPDSCPKGKQIVDVVVDPVLSKHLR 248
Query: 203 PFQLEGVRF------GLR-RGGRCLIADEMGLGKTLQAIAIAACFISAGSI--------- 246
Q +GV+F G+R G ++ADEMGLGKTLQ IA+ + I
Sbjct: 249 EHQRDGVQFLYECVMGMRCEGEGAIMADEMGLGKTLQTIALLWTLMKQNPIHGASPVIKK 308
Query: 247 -LVVCPAILRLSWAEELERWLP------FCLPAD----IHLVFGHRNNPVHLTRFPRVVV 295
L+VCPA L +W E ++WL + L A + G N +++
Sbjct: 309 ALIVCPAGLVDNWKREFKKWLGNERIGVYVLDAKNKKIANFTMGKSYN---------ILI 359
Query: 296 ISYTMLHRLRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLS 353
+ Y ML ++ + + ++I DE H ++ + KA+L + + +R ++LS
Sbjct: 360 VGYEMLRVYQEELKKGSGVDIVIADEGHRLKTANN-------KAMLAIQSLNTERRIILS 412
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKG-VRLE 411
GTP + + + I+ + PGLLG+ + F +T+ + ++ Q + + KG R +
Sbjct: 413 GTPLQNDLGEFYTAIDFVNPGLLGQ-RAAFKRTF-EAPIIRSRQPDASESELEKGEARWK 470
Query: 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLK----RSEIVSAK 455
EL V L MIRR + L LPPK I+ R +L R + S+
Sbjct: 471 EL-VSLTSRFMIRRTAEVLSKYLPPKTEHIVFCRPTKGQAEAYRAILDSPTFRLAMGSSD 529
Query: 456 AAVGVINDSEKDATNDKTPKDSDEHDDSGA---CCRLGKISYQELGIAKLSGFREWLS-- 510
A+ +IN +K + K S ++DD+ + L I L + S L
Sbjct: 530 IALQLINVLKKICNSPSLLKSSKDNDDTPSEMLQSILPLIPNNILNSSASSAKLRLLDSL 589
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
+H + ++ K++I +++ LD ++ + ++R+DG+T RQ
Sbjct: 590 VHRIYTTTE-----------EKIVIVSNYTTTLDMIERLLVSLSYTYLRLDGSTPASKRQ 638
Query: 571 SAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
+ V F + + ++ +GGVGL+ A +V ++ +P+ LQA R HR GQ
Sbjct: 639 ALVEKFNKTPKTTSFAFLLSAKSGGVGLNLIGASRIVLFDIDWNPATDLQAMARIHRDGQ 698
Query: 629 TSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
+Y F + DE +Q + ++ + K A
Sbjct: 699 KLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVDNKASA 738
>gi|327281442|ref|XP_003225457.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
carolinensis]
Length = 1441
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/494 (23%), Positives = 214/494 (43%), Gaps = 60/494 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGL-----RRGGRCLIADEMGLGKTLQAIAIAAC------- 239
K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA A
Sbjct: 477 KVPGFLFKKLFKYQQTGVRWLWELHCQQVGG--ILGDEMGLGKTIQIIAFLAGLSYSKIR 534
Query: 240 -------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR--- 289
F G L+VCP + W +E W P A +H + V L R
Sbjct: 535 TRGSNYRFTGLGPSLIVCPTTVMHQWVKEFHNWWPPFRVAVLHETGSYIKKKVKLIREIA 594
Query: 290 -FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--- 345
+++ SY+ + L++S+ +W +I+DE H +R A + +A K
Sbjct: 595 ACNGILITSYSYVRLLQESIHRYNWHYVILDEGHKIRNPN---------AAVTLACKQFS 645
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
++LSG+P + +++ + ++PG LG F + + T+ GY
Sbjct: 646 TPHRIILSGSPIQNNLKELWSLFDFVFPGKLGTLPV-FMEQFSVPITMGGYCNASPVQVK 704
Query: 406 KGVRLEELNVLLKQTV---MIRRLKQH--LLVQLPPKRRQII--RLLLKRSEI----VSA 454
+ +L+ T+ ++RR+K + + + LP K Q++ RL ++ E+ + +
Sbjct: 705 TAYKCA---CILRDTINPYLLRRMKANVKMSLSLPDKNEQVLFCRLTDEQHEVYKRFIDS 761
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKLSGFREW-LSI 511
K ++N + + + H D SG L + +EL GF W S
Sbjct: 762 KEVYQILNGEMQIFSGLTALRKICNHPDIFSGGPKILKGVPDEELNEEDHFGF--WKRSG 819
Query: 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQS 571
++ ES + +++++F ++L ++ F+ ++ +V++DG T RQ
Sbjct: 820 KMIVVESLLKI---WYKQGHRVLLFTQSRQMLHIIEAFLKQRSYSYVKMDGTTTVASRQP 876
Query: 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631
+ F + I ++ GG+G++ + A V+ + +PS QA +RA R GQT
Sbjct: 877 LISRFNEDTSIFIFLLTTRVGGLGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQTKE 936
Query: 632 VNIYIFCAKDTTDE 645
V +Y T +E
Sbjct: 937 VTVYRLLTAGTIEE 950
>gi|310824688|ref|YP_003957046.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
DW4/3-1]
gi|309397760|gb|ADO75219.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
Length = 1299
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 219/480 (45%), Gaps = 71/480 (14%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISA 243
EM +P +L + +Q EG + R GG CL AD+MGLGKTLQ + +
Sbjct: 830 EMEVSVPPALKAELRDYQREGFTWMARLAEWGGGGCL-ADDMGLGKTLQTLTLLLHRAKD 888
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
G LVV P + +W E ER+ P R PV + V+++SY +L R
Sbjct: 889 GPALVVAPTSVCFNWIREAERFAPSLRVKSYRDADRERVLPV--LKAGDVLLVSYGLLVR 946
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ +A L+VDE+ + + + KA+ D+ A+ K V LSGTP +R +
Sbjct: 947 DAERFASVPFATLVVDEAQ----AAKNPDSARAKALADIQAEAK--VALSGTPVENRLSE 1000
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ ++++PGLLG + F K + +G + + S+ +R ++
Sbjct: 1001 LWSLFHIVFPGLLG-GREAFRKRFAVPIEREGNK-EARASLSRVIR----------PFLL 1048
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAA-VGVINDSEKDATNDKT--------- 473
RR K + +LPP+ ++ ++L E +AA + I E DK
Sbjct: 1049 RRTKAEVARELPPRIETVVPVVLSEGERKLYEAARIASILQLESRTEKDKRFVMLAALTR 1108
Query: 474 -------PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
PK DE D +L ++ + ++ R ++G
Sbjct: 1109 LRLLACHPKLWDE-DSPLPSSKLERM------VERVEELR-----------AEG------ 1144
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
++ +IF+ +++L+ E + +GI F +DG T +RQ+ V +FQ E + +
Sbjct: 1145 ----SRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQARVEAFQ-RGEGDVFL 1199
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGG GL+ ++A +V+ L+ +P++ QA DRAHR GQT V + ++ T +E+
Sbjct: 1200 ISLKAGGTGLNLTAADHVIHLDPWWNPAVEDQATDRAHRIGQTRPVTVSRLVSEGTIEEA 1259
>gi|431796913|ref|YP_007223817.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430787678|gb|AGA77807.1| DNA/RNA helicase, superfamily II, SNF2 family [Echinicola
vietnamensis DSM 17526]
Length = 979
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 220/487 (45%), Gaps = 91/487 (18%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAA---CFISAGS 245
LP + + P+Q G +RF G CL AD+MGLGKT+Q +A+ A +
Sbjct: 513 LPDNFNGTLRPYQKAGYDWLRFLNEYHFGGCL-ADDMGLGKTVQTLAMLAHEKKRTEGAT 571
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPR--VVVISYTMLH 302
L+V P L +W E ++ P D+ LV+ + F + +V+ SY +
Sbjct: 572 SLLVMPTSLIYNWEVEARKFTP-----DLKVLVYTGSQRIKDSSMFSKYDLVLTSYGITR 626
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSR 360
+ + + +I+DES ++ P + KAV + K + ++L+GTP +
Sbjct: 627 LDVDILKDFFFNYIILDESQAIK------NPNSIISKAVNQLVCKHR--LILTGTPVENG 678
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE---LNVLL 417
D++ Q+N + GLLG T ++ Q Q K +++ L+ ++
Sbjct: 679 TMDLWSQMNFVNQGLLG--------------TQSIFKKQFLQPIEKKNDMDKAAKLHAMI 724
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K ++ RRLK + LP K +V+ K + + TP+
Sbjct: 725 KPFIL-RRLKTQVATDLPEK-------------VVNVKYS-------------NMTPEQE 757
Query: 478 DEHDDSGACCRLGKISYQEL------GIAKLSGFREWLSI--HPVIAESDGAAD------ 523
+++ R + + L G + I HP + ++ D
Sbjct: 758 KAYEEVKGYYREKIVKEMSIPGMNRQAFTLLRGLTQLRQIANHPRLTDTAYTGDSGKLED 817
Query: 524 ----IDVNPR-SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
+D R +K+++F+ +K L V+E++ E GI + +DG T +DRQ+ V FQ
Sbjct: 818 IVHMLDSTAREGHKVLVFSQFVKHLAIVKEYLDESGIAYSYLDGTT--KDRQAQVKDFQE 875
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+++VKI +I + AGGVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F
Sbjct: 876 NDQVKIFLISLKAGGVGLNLTKAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVIIYKFI 935
Query: 639 AKDTTDE 645
+T +E
Sbjct: 936 THNTVEE 942
>gi|94271432|ref|ZP_01291955.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
gi|93450447|gb|EAT01631.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
Length = 940
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 220/465 (47%), Gaps = 55/465 (11%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P L + +QLEG R+ + G G CL AD+MGLGKT+QA+A+ +AG LVV
Sbjct: 482 PTGLQTSLRSYQLEGYRWLRQLGELGFGACL-ADDMGLGKTIQALALLLSQAAAGPSLVV 540
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P + +W +E R+ P I HR + + +V+ SY++L R + +
Sbjct: 541 APTSVCRNWQQEAARFAPQL--KVIAYAGSHRRHLLKELGPQTLVICSYSLLQRDAERLA 598
Query: 310 EQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDI 364
Q W +++DE+ ++ +KR+ +A + ++ K K V+ +GTP LS + +
Sbjct: 599 GQHWQTIVLDEAQAIKNFLAKRS------RAAMRLSGKCK--VITTGTPLENHLSELWTL 650
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F IN PGLLG + F + + + + + + + L ++R
Sbjct: 651 FRFIN---PGLLGSLER-FKRRFI-----------IPIEQQQDQQARQRLRQLLTPFVLR 695
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSE--IVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
RLK +L +LPP+ +++ + R E + A + N ++D S
Sbjct: 696 RLKSEVLQELPPRTDVTLQVEMGRQEASLYEALRRQALRNLEQQDEQRAPLKILSAIMKL 755
Query: 483 SGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
ACC RL + +L AK F + +S ++ +++++F+ +
Sbjct: 756 RRACCHPRL-VLPESDLPCAKHELFSKVVS--------------ELLENGHRILVFSQFV 800
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
L +++ + +GIG+ +DG+T P RQ V FQ + + +I + AGG+GL+ +
Sbjct: 801 DHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK-DLFLISLRAGGLGLNLTG 859
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQ V +Y +T +E
Sbjct: 860 ADYVIHLDPWWNPAVEQQASDRAHRIGQDRPVTVYRLITSNTIEE 904
>gi|421498624|ref|ZP_15945718.1| SWI/SNF family helicase [Aeromonas media WS]
gi|407182358|gb|EKE56321.1| SWI/SNF family helicase [Aeromonas media WS]
Length = 1280
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 206/466 (44%), Gaps = 66/466 (14%)
Query: 197 LLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LL + +Q +GVR+ G CL AD+MGLGKTLQA+ + G LVV P
Sbjct: 827 LLTALRDYQKDGVRWMATLAHHGFGACL-ADDMGLGKTLQALMVLRMRQHLGPALVVVPK 885
Query: 253 ILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
+ +W EE+ R+ P F PA+ R + + ++++++Y ML L +
Sbjct: 886 SVVTNWQEEVTRFAPELEVVVFENPAE-------RETLIQEAKAGQIILVNYGMLGSLAQ 938
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYD 363
S+ + WA +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 939 SLKSRRWASMVLDEAQQI----KNAGTQRAKLLFQLEGDFR--LALSGTPIENHLGELWS 992
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV-- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 993 LFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVISP 1031
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1032 FILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQSA 1079
Query: 481 DDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
D L G + L + EW + E+ + ++ +++++F+
Sbjct: 1080 DGRALMHVLSGLTRLRRLCCSPELVMPEWSQTSSKLDEAMALLEEAID-GGHRVLVFSQF 1138
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +L ++ I K + +DG + RQ ++ F+ V + +I + AGG GL+ +
Sbjct: 1139 VDLLSLLRARIELKKWDYCYLDGGCSAKSRQESILRFR-HEPVPLFLISLKAGGTGLNLT 1197
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1198 QADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1243
>gi|288802766|ref|ZP_06408204.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
gi|288334916|gb|EFC73353.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
Length = 1343
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 232/476 (48%), Gaps = 58/476 (12%)
Query: 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAAC 239
E + I +PK+L + +Q EG + R G CL AD+MGLGKT+Q IA+
Sbjct: 873 EACSKKIPVVPKTLQAQLRDYQEEGFEWMSRLTAWGAGVCL-ADDMGLGKTVQTIALLLE 931
Query: 240 FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299
G+ L+V P+ + +W EL+R+ P L I R+ + + V++ +Y
Sbjct: 932 QSENGASLIVAPSSVVPNWRNELQRFAP-TLNLTILNQSEDRSKDIKEAKAGDVIITTYG 990
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP--- 356
+L+ + + ++W ++ +DE+H ++ + + KA + + A+ K V+L+GTP
Sbjct: 991 LLNIQQDDLTGREWNVVCLDEAHTIK----NANTKMSKAAMLLKAQHK--VILTGTPIQN 1044
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
L+ +++F IN PGLLG A+ F K + + ++G D K R +L L
Sbjct: 1045 HLAELWNLFQFIN---PGLLGSAE-QFRKKF--ILPIEG-------DNDKA-RQSQLRRL 1090
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT--NDKTP 474
+ ++RR K ++ +LP K I+L + E+ S + A+ + E +A +K
Sbjct: 1091 I-SPFLLRRTKAEVIDELPAKNE--IKLPV---ELSSEEMAMYEVKRRETEAKILENKAD 1144
Query: 475 KDSD----EHDDSGAC-CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
K S H AC C L ++ L +K+ F + +AES +N
Sbjct: 1145 KVSTLAEITHLRQMACSCSLVDKRWK-LPSSKVLAFID-------LAES-------LNDS 1189
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
N+ ++F+ + +++ + + ++ +DG+T R+ V FQ S + +I +
Sbjct: 1190 GNRALVFSQFTSFFEEIKKAMETAKLPYLYLDGSTPMSMREKLVKEFQ-SGKCPFFLISL 1248
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG+GL+ + A V+ L+ +P++ QA DRA+R GQ V +Y ++ T +E
Sbjct: 1249 KAGGLGLNLTGANYVIHLDPWWNPAIEQQATDRAYRIGQKQDVTVYRLISQHTIEE 1304
>gi|403338635|gb|EJY68565.1| DNA helicase, putative [Oxytricha trifallax]
Length = 2259
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 137/607 (22%), Positives = 253/607 (41%), Gaps = 109/607 (17%)
Query: 73 RVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKL 132
++ LE+ S D FS+ + F E +++L Q D++ + K ++
Sbjct: 196 KIVLELISHDYFSI---KFQKFFNQDCSEMVKQLKQKGKDIINWDVQR-----KQWNVRI 247
Query: 133 RDYNPVLTCLKN-------SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEV 185
+YN +L + + ++++GIP ++ G+ + + D
Sbjct: 248 DEYNDLLQQFTDYLANNPQKSQVDIKGIPNFAFELL--------NGKPLLTQDDQRQDNR 299
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
M G LP S+ D + +Q V G+++ GR +I DEMGLGKTL+++A+A +
Sbjct: 300 TYSM-GNLPPSMRDNLFEYQKNSVILGVKQQGRFMILDEMGLGKTLESLAVAMVYFDEWP 358
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+LVVCP+ ++ W EE+ +W+P P+ I ++ R +V + SY + R +
Sbjct: 359 LLVVCPSQMKNHWREEILKWVPDFDPSQITVM---RKGREAFNDNSKVFITSYKIAAR-Q 414
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL---SGTPSLSRPY 362
+S I++ + ++I DES ++ + +L + +I+L S T SL
Sbjct: 415 QSQIQKRFQVVICDESQALKTPN-------TRYILRLNGVHLKILLFKRRSNTGSLKLKR 467
Query: 363 DIFH--QINML----------WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
D H Q N L P +L + + CD+ +Q
Sbjct: 468 DALHFRQQNYLNQEKERCCHDMPPILKQKLH----IKCDLNEMQ---------------- 507
Query: 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470
E+ V+L M+ Q L VQL ++ R+ +EI+ K
Sbjct: 508 -EIRVILN-GRMLSESMQTLFVQLKNIEKEAQRI----TEIIKCKM-------------- 547
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
D+ ++ ++D G LG + I +L I ++ + I N +
Sbjct: 548 DRMSTSANNYNDVGNL--LGSNQKDDQLIDQLFEVSSQARIKGILKT---VSQILENEQ- 601
Query: 531 NKMIIFAHHLKVLDGVQEFI----------SEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
K+I+ A + ++ ++ + +E ++RID NT +Q + +FQ +
Sbjct: 602 -KVIVIAQQNQSIEEIENTVRKVFDDQREKNESNYNYIRIDNNTPSDLKQQMIRNFQENP 660
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR--RGQTSAVNIYIFC 638
+K+ I+ + + +SA N++F E + M QA R R +N+Y
Sbjct: 661 IIKVVILSLATSSLASVLTSASNIIFAETYWNNEQMAQAIFRDARSLNQDQQCLNVYYLY 720
Query: 639 AKDTTDE 645
AKD+ DE
Sbjct: 721 AKDSLDE 727
>gi|381151826|ref|ZP_09863695.1| DNA/RNA helicase, superfamily II, SNF2 family [Methylomicrobium album
BG8]
gi|380883798|gb|EIC29675.1| DNA/RNA helicase, superfamily II, SNF2 family [Methylomicrobium album
BG8]
Length = 1411
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 114/443 (25%), Positives = 211/443 (47%), Gaps = 57/443 (12%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL 276
G CL AD+MGLGKT+Q +A+ G L+V P + L+W E R+ P P L
Sbjct: 973 GACL-ADDMGLGKTIQGLALLVERAPDGPALIVAPTSVCLNWENEANRFAPTLKPR--QL 1029
Query: 277 VFGHRNNPVHLTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVR-CSKRTSEP 333
G R + +++ SY +L + + + + + + +I+DE+ ++ + R S+
Sbjct: 1030 GGGDRQGMLESLGPYDLLICSYGLLQQEAVAEMLAKIRFRTVILDEAQAIKNTATRRSQ- 1088
Query: 334 EEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+++ + ++++GTP L +++F IN PGLLG +
Sbjct: 1089 ----GAMNLQGDFR--IVMTGTPLENHLGELWNLFRFIN---PGLLGSQE---------- 1129
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE 450
+ + G + +D R + L L+ Q ++RR K +L +LPP+ + + L R E
Sbjct: 1130 QFTLRFAGPIERDRDAQAR-QRLKKLI-QPFILRRTKTQVLQELPPRTEIPVYVELSREE 1187
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL------GKISYQELGI--AKL 502
+ +A + DS + + P A +L +++ E+ + +KL
Sbjct: 1188 MAFYEA---IRRDSLNELASSDGPPGQKHLKILAAITKLRRSCCDSRLANAEINLPSSKL 1244
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDG 562
+ F E I E ++ +K ++F+ + L ++ ++ +GI + +DG
Sbjct: 1245 AAFGE-------IVE-------ELRDNKHKALVFSQFVDHLQLIRNYVEGRGIRYQYLDG 1290
Query: 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR 622
+T ++RQ V +FQ + ++ +I + AGGVGL+ ++A V+ ++ +P++ QA DR
Sbjct: 1291 STPAKERQQRVDAFQ-RGDGELFLISLKAGGVGLNLTAADYVIHMDPWWNPAVEDQASDR 1349
Query: 623 AHRRGQTSAVNIYIFCAKDTTDE 645
AHR GQ V IY AK T +E
Sbjct: 1350 AHRMGQQRPVTIYRMIAKQTIEE 1372
>gi|340377289|ref|XP_003387162.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like
[Amphimedon queenslandica]
Length = 1906
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 133/550 (24%), Positives = 242/550 (44%), Gaps = 82/550 (14%)
Query: 199 DVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA 252
+++ P+QLEG+ F C++ADEMGLGKT+Q+IA+ I A G LV+ P
Sbjct: 999 NLLRPYQLEGLNWLLFNWYTRQNCILADEMGLGKTVQSIALILEIIDAGIRGPFLVIAPL 1058
Query: 253 ILRLSWAEELERWLPFC------------LPADIHLVFGHRNNPVHLTRFP-RVVVISYT 299
+W E E W + + L F ++ + + + V+V +Y
Sbjct: 1059 STISNWQREFETWSNLNVIIYHGSAYSRRMIQEYELYFRDQSGKIIIDAYKFNVIVTTYE 1118
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+L + W +I+DE+H ++ +K E ++ + ++ VLL+GTP +
Sbjct: 1119 VLLSDNSELKNILWRAVIIDEAHRLK-NKNCKMLEGLREL-----HMEHRVLLTGTPLQN 1172
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
++F +N L P + F + + D+KT + ++EEL +LK
Sbjct: 1173 SVDELFSLLNFLEPSQFPSLQL-FLQQFGDLKTEE--------------QVEELQTVLK- 1216
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT-----NDKTP 474
+M+RRLK+ + L PK II + L + +A + E++ T ++ P
Sbjct: 1217 PMMLRRLKEDVEKSLAPKEETIIEIELTAIQKQYYRAIL------ERNFTFLTKGSNTVP 1270
Query: 475 KDSDEHDDSGACCRLG-KISYQELGIAKLSGFREWLSIH--------PVIAESDGAADID 525
+ + CC I+ EL I E +H +I S +D
Sbjct: 1271 NLLNTMMELRKCCNHPFLIAGAELKIV------EDFQVHFPNRHISESLIQASGKLVLVD 1324
Query: 526 -----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580
+ + +K++IF+ +K LD +++++ KG + RIDG RQ+A+ F
Sbjct: 1325 KLLPKLREKGHKVLIFSQMVKCLDILEDYLRMKGYMYERIDGQVRGTLRQAAIDRFSKPE 1384
Query: 581 EVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ + T AGG+G++ ++A V+ + +P +QA+ R HR GQ V +Y
Sbjct: 1385 YDRFVFLLCTRAGGLGINLTAADTVIIYDSDWNPQNDIQAQARCHRIGQNKMVKVYRLIT 1444
Query: 640 KDTTDESHWQNLNKSL---RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
++ + + + L + V + N + A G+S E+ + RG+ +D
Sbjct: 1445 TNSYEREMFDRASLKLGLDKAVLQSMNTQQQA------SGLSKSEIENLLKRGAYSTIMD 1498
Query: 697 QVASSDQFQE 706
+++QF E
Sbjct: 1499 SDDAANQFCE 1508
>gi|31322808|gb|AAP31846.1| Brg1p [Tetrahymena thermophila]
Length = 1228
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 211/471 (44%), Gaps = 70/471 (14%)
Query: 203 PFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
P+QL G+++ + L +ADEMGLGKT+Q I++ A + G LVV P
Sbjct: 421 PYQLIGLKWLISLYNNKLNGILADEMGLGKTIQTISLFAYLMEVKKNNGPFLVVVPLSTI 480
Query: 256 LSWAEELERWLPFCLPADIHLVFGHRNNP---------VHLTRFPRVVVISYTMLHRLRK 306
+W E ++W P ++ +P + T++ V + +Y + + R
Sbjct: 481 SNWVLEFDKWAPKIKK------IAYKGSPQVRKELAKELKTTKW-NVCITTYDYILKDRL 533
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
++ + DW +IVDE H ++ SK + ++L +LL+GTP + +++
Sbjct: 534 TLHKFDWKYIIVDEGHRMKNSK-----SKFASILGQQYTSDYRILLTGTPLQNNLGELWA 588
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL----LKQTV- 421
+N L P + DF K + + G + + EE N+L L Q +
Sbjct: 589 LLNFLLPKVFSSCD-DFEKWFSMPLSKFGSAAE-----KESALTEEENLLIINRLHQVLR 642
Query: 422 --MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++RR+K+ + +LP K II++ L + K IND D +ND + +
Sbjct: 643 PFLLRRVKKEVEAELPDKVEHIIKVELSSWQ----KILFNKINDRSIDTSNDNFQSKNGK 698
Query: 480 HD------DSGACCR-----LGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
CC L +YQ + I K+SG E L ++A+ +
Sbjct: 699 KALMNLMMQLKKCCNHPYLFLNSDAYQIDDMIWKVSGKFELLD--KMLAK--------LI 748
Query: 528 PRSNKMIIFAHHLKVLDGVQEF--ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKI 584
++++IF V+D ++E+ + E I ++R+DG T +R + F N +
Sbjct: 749 RTGHRVLIFTQMTHVMDLMEEYFKLREDYIKYLRLDGTTKADERGVKMAQFNQPNSPYNV 808
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
I+ AGG+GL+ +A V+ + +P + QA+DRAHR G S V +Y
Sbjct: 809 FILSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAQDRAHRIGSKSEVRVY 859
>gi|322799754|gb|EFZ20959.1| hypothetical protein SINV_16592 [Solenopsis invicta]
Length = 529
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 125/492 (25%), Positives = 216/492 (43%), Gaps = 94/492 (19%)
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILRLSWAEE 261
L +R+ +G ++ADEMGLGKT+Q I G LV P ++W E
Sbjct: 2 LNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWERE 61
Query: 262 LERWLP--FCLP----ADIHLVFGHRNNPVH-----------------LTRFPRVVVISY 298
E W P +C+ D +V R N + L +F V++ SY
Sbjct: 62 FETWAPDFYCVTYVGDKDSRIVI--RENELSFEEGAVRSGRASKIRSSLIKF-NVLLTSY 118
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+GTP
Sbjct: 119 ELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTGTPLQ 172
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ ++FH +N L + K++ + +Q + F D SK ++++L+ +L
Sbjct: 173 NNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEDQVKKLHEMLG 217
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
M+RRLK +L +P K I+R+ L + K I +A N PK
Sbjct: 218 PH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---PKGGG 269
Query: 479 EH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHPVIAE 517
+ D CC + SY+ + K +G LS
Sbjct: 270 QQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETSALIKAAGKLVLLSKMLKKLR 329
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
DG ++++IF+ K+LD +++++ +G + RIDGN RQ A+ F
Sbjct: 330 DDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAIDRFN 379
Query: 578 LSNEV----KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
+ + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 380 APGKYCAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 439
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 440 IYRFVTRNSVEE 451
>gi|8778961|gb|AAD49766.2|AC007932_14 Contains similarity to HARP gene from Homo sapiens gb|AF210842. It
contains SNF2 N-terminal PF|00176 and helicase
C-terminal PF|00271 domains [Arabidopsis thaliana]
Length = 592
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 33/275 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
K+P + +LPFQ EG+ + GGR L+ADEMGLGKTLQA + C + S ++
Sbjct: 163 KIPSHIEPKLLPFQREGIEY---HGGRVLLADEMGLGKTLQA---SNCCDNMRSGILAGS 216
Query: 252 AILRLSWAEELERWLPFCLPAD---IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+ L LP ++ +V + +HL +V SY ++ +L K +
Sbjct: 217 DYCTIFITFTLGNILPQPGGSNKCGFTIVSSNTKGTIHLDGVFNIV--SYDVVTKLDKLL 274
Query: 309 IEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ D+ ++I DESH ++ +KRTS A L V K + +LLSGTP+LSRP ++F
Sbjct: 275 MALDFKVVIADESHFLKNGQAKRTS------ACLPVIKKAQYAILLSGTPALSRPIELFK 328
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTV----------QGYQGQLFQDFSKGVRLEELNVL 416
Q+ L+P + + +++ YC K V Y+G F + +EL+ L
Sbjct: 329 QLEALYPDVY-RNIHEYGGRYC--KGVSPLHIEKLPRSSYKG-FFGTYQGASNHDELHNL 384
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
+K TVMIRRLK+ +L +LP KRRQ + L L ++
Sbjct: 385 MKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDM 419
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+E+K A++ I A GVG+ ++A V+F EL +P ++QAEDRAHR GQ S+VNI+ A
Sbjct: 453 DEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLA 512
Query: 640 KDTTDESHWQNLNKSLRCVSSATNGKYDAL 669
DT D+ W + L + +G+ +AL
Sbjct: 513 NDTVDDIIWDVVQSKLDNLGQMLDGQENAL 542
>gi|212702386|ref|ZP_03310514.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
gi|212674185|gb|EEB34668.1| SNF2 family N-terminal domain protein [Desulfovibrio piger ATCC
29098]
Length = 1085
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 231/498 (46%), Gaps = 42/498 (8%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSIL 247
PK+L + +QL+G+ F G ++ADEMGLGKT+Q +A + + G L
Sbjct: 616 PKALQANLRSYQLQGLSYLNFLSEYGFGGILADEMGLGKTVQTLAFIQHMVESRFEGPNL 675
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIH--LVFGHRNNPV--HLTRFPRVVVISYTMLHR 303
+V P + +W E E+++P +H ++G R + H+ +++ +Y +L R
Sbjct: 676 IVVPTSVLPNWEREAEKFVP-----GLHRLTIYGTRREGMFKHIAE-SDLIITTYALLRR 729
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ M + ++ +I+DE+ +++ + +AV + A+++ + LSGTP + ++
Sbjct: 730 DLEEMEKYEFNTVILDEAQNIKNPNTIT----ARAVRRINARMR--LCLSGTPIENNLFE 783
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ L PG LG +++ F + VK ++ + VR ++
Sbjct: 784 LWSLFEFLMPGFLG-SQHAFQRGI--VKPIKDGDAETLDYLRTRVR----------PFIL 830
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR K + LPPK + L+ ++ AA+ ++ A D+ +
Sbjct: 831 RRTKAEVAKDLPPKVESVTCCALEEAQ-AELYAALARKLRAQVLADVDEKGLAKSQMSIL 889
Query: 484 GACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
A +L +I + L L GF L A D +I +K+++F+ +++
Sbjct: 890 DALLKLRQICCHPRLLKIDLPGFSNNLPSGKFDAFKDMVMEIVEG--GHKVLVFSQFVQM 947
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L +++++ I F +DG + +DR V F S ++ I +I + AGG GL+ +SA
Sbjct: 948 LQIIRQWLEFSQIPFCYLDGAS--KDRFEQVDRFNNSPDIPIFLISLKAGGTGLNLTSAD 1005
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
V+ + +P++ QA DR HR GQT V Y ++T +E + L ++ R V+ A
Sbjct: 1006 YVIHYDPWWNPAVESQATDRTHRIGQTRQVFSYKLICQNTVEEKILK-LQEAKRGVAEAI 1064
Query: 663 NGKYDALQEIAVEGVSYL 680
D + + E + L
Sbjct: 1065 IPGQDTWKSLTREDLEML 1082
>gi|356555545|ref|XP_003546091.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
isoform 2 [Glycine max]
Length = 1064
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 69/481 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAIKF---LGNPDERRHIRDELLVAGKFD-VCVTSFEMAIKEKSALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYSTNYRL-LITGTPLQNNLHELWSLLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + A+ T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEIFSSAE-----TFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + +A + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYRALL---------------QKDLEVVNAGGERK 451
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------------IDVNPRSNKMII 535
RL I+ Q + P D + + R ++++I
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLI 511
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 512 FSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGL 571
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E + K
Sbjct: 572 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 631
Query: 655 L 655
L
Sbjct: 632 L 632
>gi|266620561|ref|ZP_06113496.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
gi|288867854|gb|EFD00153.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
Length = 1154
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 221/503 (43%), Gaps = 92/503 (18%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRGGRC---LIADEMGLGKTLQAIAIAACFI----SAG 244
++P L + P+Q G R+ + G ++AD+MGLGKT+QAIA A + G
Sbjct: 649 EVPAGLNAELRPYQKFGFRWLMTLGAMGFGGILADDMGLGKTVQAIAYLAAVKEMREAEG 708
Query: 245 S---------------------------ILVVCPAILRLSWAEELERWLPFCLPADIHLV 277
S L++CPA L +W E+ R+ P +
Sbjct: 709 SDGERGDEERSDAKAAAEDGRKQEVSRRSLIICPASLVYNWESEIHRFAPGLTVDTVVGS 768
Query: 278 FGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
G R + +R +++ SY +L R ++ E + + +DE+ +++ + T + VK
Sbjct: 769 AGIRKEKIKESR-ADILLTSYDLLKRDVEAYQETLFDTVFIDEAQNIK-NHGTQAAKAVK 826
Query: 338 AVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
AV R L+GTP +LS + IF + L PG LG K+ F + Y T +
Sbjct: 827 AVSGA-----RRFALTGTPIENALSELWSIF---DFLMPGFLGGYKH-FKEKYEQPVTAR 877
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII--RLLLKRSEIV 452
QD RL + + ++RRLK+ +L +LP K +++ R+ + EI
Sbjct: 878 -------QDEVAAERLRRM----IRPFILRRLKKEVLRELPDKLEEVVYSRMEDAQREIY 926
Query: 453 SAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512
A+ D K S E R+GK+ +A+L+ R+
Sbjct: 927 EARV----------QKLLDSLSKQSQEE------FRVGKLQI----LAELTHLRQLCCDP 966
Query: 513 PVIAES--DGAADIDV--------NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDG 562
++ E+ GAA +D NK+++F+ +LD +++ + E+ IG+ + G
Sbjct: 967 SLVYENYNGGAAKVDTCVELVKNAVEAGNKILLFSQFTSMLDIIRKRLDEEEIGYYILTG 1026
Query: 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR 622
R V +F ++ + +I + AGG GL+ ++A V+ + + + QA DR
Sbjct: 1027 AVSKEKRSELVRAFN-EDDTPVFLISLKAGGTGLNLTAASIVIHFDPWWNQAAQNQATDR 1085
Query: 623 AHRRGQTSAVNIYIFCAKDTTDE 645
AHR GQ V +Y KDT +E
Sbjct: 1086 AHRIGQQQVVTVYKLIMKDTLEE 1108
>gi|411008663|ref|ZP_11384992.1| SNF2 family helicase [Aeromonas aquariorum AAK1]
Length = 1276
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/469 (25%), Positives = 208/469 (44%), Gaps = 66/469 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P L+ + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 820 PDELMGPLRDYQKEGVRWLATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 878
Query: 250 CPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
P + +W EE+ R+ P F PA+ R V R ++++++Y ML
Sbjct: 879 VPKSVVTNWQEEVARFAPELEVVVFDNPAE-------REGMVREARAGQIILLNYGMLGS 931
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
L +++ + W+ +++DE+ + + + + K + + + + LSGTP L
Sbjct: 932 LAEALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGE 985
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F IN PGLLG G+ + F K V+ + LL+
Sbjct: 986 LWSLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAV 1024
Query: 421 V---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RRLK +L +LP K I + L +E +AT + +
Sbjct: 1025 ISPFILRRLKHQVLTELPDKTEIIHHISLSPAE------------RQLYEATRREVVQQV 1072
Query: 478 DEHDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
D L G + L + EW + E+ + ++ +++++F
Sbjct: 1073 QSADGRALMHVLSGLTRLRRLCCSPQLVMPEWAEASSKLDEAMALLEEAID-GGHRVLVF 1131
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + +L ++ I ++ + +DG + RQ ++ F+ V + +I + AGG GL
Sbjct: 1132 SQFVDLLSLLRTRIEQRQWDYCYLDGGCSAKARQDSILRFR-HEAVPLFLISLKAGGTGL 1190
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1191 NLTQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1239
>gi|356521899|ref|XP_003529588.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
[Glycine max]
Length = 1058
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 216/481 (44%), Gaps = 69/481 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 186 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 245
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M+ + + ++
Sbjct: 246 NWMNEIRRFCPVLRAIKF---LGNPDERKHIREELLVAGKFD-VCVTSFEMVIKEKSALR 301
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N
Sbjct: 302 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQNNLHELWALLN 355
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G + ++ Q K +R ++RRLK
Sbjct: 356 FLLPEI-----FSSAETFDEWFQISGENDEHEVVQQLHKVLR----------PFLLRRLK 400
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 401 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEVVNAGGERK 445
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESD------------GAADIDVNPRSNKMII 535
RL I+ Q + P D + R ++++I
Sbjct: 446 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLI 505
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ +G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 506 FSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGL 565
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E + K
Sbjct: 566 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 625
Query: 655 L 655
L
Sbjct: 626 L 626
>gi|414590807|tpg|DAA41378.1| TPA: hypothetical protein ZEAMMB73_390417 [Zea mays]
Length = 917
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 231/510 (45%), Gaps = 71/510 (13%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRGGRCL---IADE 224
D ++N R + ++E + + P +L L P+QLEG+++ L L +ADE
Sbjct: 195 DESKFNAGRRLDFTVHSIEEKVTEQPSALEGGELRPYQLEGLQWMLSLFNNNLNGILADE 254
Query: 225 MGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELERWLPFC-------LPAD 273
MGLGKT+Q IA+ A + AG L++ P + +W+ E + W P P +
Sbjct: 255 MGLGKTIQTIALIAYLLEKKEVAGPHLIIAPKAVLPNWSNEFKTWAPSIGTILYDGRPEE 314
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR---CSKRT 330
L+ R+ +F V++ Y ++ + +K + + W LIVDE H ++ C+
Sbjct: 315 RRLL---RDKNFDGEQF-NVLLTHYDLILKDKKFLKKVHWHYLIVDEGHRLKNHECA--- 367
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY--- 387
+ L ++R +LL+GTP + +++ +N + P + ++ +F + +
Sbjct: 368 -----LARTLVSGYMIRRRLLLTGTPIQNSLQELWSLLNFILPNIFNSSQ-NFEEWFNAP 421
Query: 388 --CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
CDV D + + + L+ +L+ ++RR K + LP K +++
Sbjct: 422 FACDVS---------LNDEEQLLIIHRLHQVLR-PFLLRRKKDEVEKYLPVK----TQVI 467
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG--ACCRLGKI------SYQEL 497
LK KA + EK A K + ++ CC + YQ
Sbjct: 468 LKCDMSAWQKAYYEQVTSREKVALGYGIRKKALQNLSMQLRKCCNHPYLFVEHYNMYQRE 527
Query: 498 GIAKLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
I + SG E L + P + + +++++F+ K+LD ++ ++
Sbjct: 528 EIVRASGKFELLDRLLPKLQRA-----------GHRVLLFSQMTKLLDVLEIYLQMYNFK 576
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
++R+DG+T +R + F N E + ++ AGG+GL+ +A V+ + +P +
Sbjct: 577 YMRLDGSTKTEERGRLLADFNKKNSEYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 636
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QAEDRAHR GQ + V +++ + + +E
Sbjct: 637 DQQAEDRAHRIGQKNEVRVFVLVSVGSIEE 666
>gi|408397898|gb|EKJ77035.1| hypothetical protein FPSE_02679 [Fusarium pseudograminearum CS3096]
Length = 1671
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 156/582 (26%), Positives = 249/582 (42%), Gaps = 97/582 (16%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F +G ++ADEMGLGKT+Q ++ + +A G LVV P +
Sbjct: 455 FQLRGLNFLCLNWTKGNNVILADEMGLGKTVQTVSFLSWLRNARHQEGPSLVVAPLSVIP 514
Query: 257 SWAEELERWLP------FCLPADIH--------LVFGHRNNPVHLTRFPRVVVISYTMLH 302
+W + W P + P D LV G+ P +F ++V SY +
Sbjct: 515 AWCDTFNHWSPDLNYVVYLGPEDARNIIREHELLVDGNPKKP----KF-NILVTSYEFIL 569
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ + + W L VDE+H R R S+ + KV L++GTP +
Sbjct: 570 QDWQFLQSIKWQTLAVDEAH--RLKNRESQLYNRLVNFGIPCKV----LITGTPIQNNLA 623
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
++ ++ L PG K D + D+ ++ Q E+L L K
Sbjct: 624 ELSALLDFLNPG-----KVDIDE---DLDSLSANDAQ-----------EKLQQLHKAIAP 664
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR K+ + LPPK +IIR+ L ++ K + + DATN H
Sbjct: 665 YILRRTKETVESDLPPKTEKIIRVELSDVQLDYYKNILTRNYSALCDATNG--------H 716
Query: 481 DDS--GACCRLGKIS---YQELGIAK--LSG-FREWLSIHPVIAESDGAADID-----VN 527
+S L KIS Y G + L+G R I +IA S +D +N
Sbjct: 717 KNSLLNIMMELKKISNHPYMFPGAEEKVLAGSVRREDQIKGLIASSGKMMLLDQLLSKLN 776
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-I 586
++++IF+ +K+LD + ++ S +G F R+DG R+ A++ F + +
Sbjct: 777 KDGHRVLIFSQMVKMLDILGDYCSLRGYKFQRLDGTIAAGPRRMAINHFNADDSDDFCFL 836
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ +A V+ + +P LQA RAHR GQ VNIY +K+T +E
Sbjct: 837 LSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKRPVNIYRLVSKETVEEE 896
Query: 647 HWQN-----LNKSLRCVSSATNGKYDALQE------IAVEGVSYLEMSDKTDRGSEDLTL 695
+ L + L + T+ A +E + VEG S SED+ +
Sbjct: 897 VLERARNKLLLEYLTIQAGVTDDGKAAFKEELNKKGLRVEGPS----------SSEDIQM 946
Query: 696 DQVASSDQFQELMKVPESSEASDFRAINTNDEIT-AKMNDKL 736
S + E E E D +I N EIT K++DK+
Sbjct: 947 VLKMRSSKMFEQSGNQERLEQLDIDSILENAEITKTKVDDKI 988
>gi|428673084|gb|EKX73997.1| helicase family member protein [Babesia equi]
Length = 1736
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 167/667 (25%), Positives = 283/667 (42%), Gaps = 133/667 (19%)
Query: 147 GIEVEGIPWVTLNVVEKLSHSIDTGRWNP--------CRPEHL----------------- 181
G IPW T HSI ++ P C P++L
Sbjct: 633 GDAARSIPWNT--------HSISLTKFEPYLQTPPYLCNPDYLEQLGYIRRPGPVKVEGA 684
Query: 182 -SDEVV--DEMIGKLP---KSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQ 232
D +V +E+ G++P + L D +QL G+ + ++RG L+ADEMGLGKT+Q
Sbjct: 685 PGDGMVKPEEVKGEVPVPGRKLRD----YQLTGLNWMVNRMKRGLSVLLADEMGLGKTVQ 740
Query: 233 AIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN--NPVH 286
I++ F+ G L++ P +W E E WLP A+ +G+ + +
Sbjct: 741 TISLVGHFMYKEFLIGPYLIIVPQSTIDNWMREFETWLP---QANAVCYYGNASAREIIR 797
Query: 287 LTRFPRVVVISYTMLHR-----LRKSMIEQ----------DWALLIVDESHHVRC--SKR 329
RV V +R S+I W L++VDE+H ++ SKR
Sbjct: 798 QRELCRVFVPGKGERYRCDVCITTPSIINAPVDLEFLRRISWQLMVVDEAHQLKNKHSKR 857
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
E ++ A K +LLSGTP +L + + H IN P + + DF +
Sbjct: 858 FVE------LMQFMADYK--LLLSGTPLHNNLEELWTLLHFIN---PQIYTYYE-DFRRR 905
Query: 387 YCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLL 446
Y DV+ G+ +K +L L L + V+ RR+K+ + LP K +I+R+ L
Sbjct: 906 YSDVENPAAI-GE-----NKQKQLLSLQQELHEFVL-RRVKRDVEKSLPNKVERILRVEL 958
Query: 447 KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506
+I K + + E+ A N + S ++ C L K+ + +
Sbjct: 959 SPMQIEWYKNILA--RNYEELAKNSGGSRSSLQN----ICMELKKVCNHPFLCYEPEDRQ 1012
Query: 507 EWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
+WL + +I S +D + + ++++IF+ +++L+ + E+++ +G R+D
Sbjct: 1013 QWL--NGLIYGSGKICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLD 1070
Query: 562 GNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620
G R+ A+ F N ++ AGG+G++ ++A V+ + +P LQAE
Sbjct: 1071 GTMGKEVRKKAMDHFNDPNSDDFCFLLSTKAGGLGINLTTADTVIIYDSDWNPQNDLQAE 1130
Query: 621 DRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL---RCVSSATNGKYDAL---QEIAV 674
RAHR GQT V IY KD+ +++ + + V N K DA+ ++
Sbjct: 1131 ARAHRIGQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKKSDAVVFQDDMGK 1190
Query: 675 EGVSYLEMSDKTDRGSE----------------DLTLDQVASSDQFQELMKVPESSEASD 718
G S E++ G+ D+ LD+V EL K +S A+D
Sbjct: 1191 SGFSREELAKILKFGASKLWSTANPAKASADGLDIDLDKVLEE---AELTKENDSDLAAD 1247
Query: 719 FRAINTN 725
+ TN
Sbjct: 1248 LLSSYTN 1254
>gi|392986135|ref|YP_006484722.1| DNA helicase [Pseudomonas aeruginosa DK2]
gi|419753776|ref|ZP_14280174.1| DNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|384399715|gb|EIE46080.1| DNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321640|gb|AFM67020.1| putative DNA helicase [Pseudomonas aeruginosa DK2]
Length = 656
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 206/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPAGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E+++ P V ++NP + ++++Y L + +A++++D
Sbjct: 309 REIQQVYPSA------TVAIQQDNPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G+G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGLGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEGTIDEQLWQLLN 629
>gi|338214218|ref|YP_004658279.1| SNF2-like protein [Runella slithyformis DSM 19594]
gi|336308045|gb|AEI51147.1| SNF2-related protein [Runella slithyformis DSM 19594]
Length = 1284
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 213/471 (45%), Gaps = 56/471 (11%)
Query: 192 KLPKSLLDVILPFQLEGVR-------FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-- 242
KLP+++ + P+Q EG + FG G CL AD+MGLGKTLQ + F+
Sbjct: 816 KLPQNITATLRPYQEEGYKWLHFLDEFGW---GGCL-ADDMGLGKTLQML----TFLQEQ 867
Query: 243 -----AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPVHLTRFPRVVVI 296
G LVV P L +W E + FC +++ G R V + +++
Sbjct: 868 KNRNPKGVHLVVVPKTLIFNWQAEATK---FCPDLTLYVHTGPQRTKNVRVFNRYDIILS 924
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSG 354
+Y + + + + +++DE+ ++ P+ + KAV + A+ + + ++G
Sbjct: 925 TYGSVRSDIELLSSFRFHYVVLDEAQAIK------NPDSMISKAVKLLNAQNR--LTMTG 976
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP + +D++ Q + L PG LG DF +T L + R EL
Sbjct: 977 TPVENNTFDLYSQFDFLNPGFLGHE--DFFRTEY---------ATLIDKYQDKTRAAELR 1025
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
L+ M++R K+ + LP K ++ + + + + D +D K
Sbjct: 1026 RLI-YPFMLKRTKEEVAKDLPEKTETVLYCEMDKRQ----RKVYNAFRDKYRDMIAGKMA 1080
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534
+ E L K+ A LS ++ +AE +I+ N +K++
Sbjct: 1081 EVGREQASFLILEGLLKLRQICDSPALLSDDEDYGQESVKLAEI--VREIEENASHHKIV 1138
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
IF+ LK+LD +++ + I + +DG T +DR + V+ FQ +E ++ ++ + AGGV
Sbjct: 1139 IFSQFLKMLDLIRQKLERDRIPYEYLDGKT--QDRAARVNRFQGDDECRVFLMSLKAGGV 1196
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ + A V ++ +P++ QA DR HR GQT V Y KDT +E
Sbjct: 1197 GLNLTEADYVYLVDPWWNPAVEQQAIDRVHRIGQTKRVFAYRMICKDTVEE 1247
>gi|171915800|ref|ZP_02931270.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
Length = 896
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 120/502 (23%), Positives = 228/502 (45%), Gaps = 73/502 (14%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P L + P+QLEG+ +F G ++AD+MGLGKTLQ IA + AG
Sbjct: 426 PSGLQATLRPYQLEGLGWLQFLREYGLHGILADDMGLGKTLQTIAHLLTEVEAGRADQPS 485
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-----RVVVISYTML 301
L++ P + +W E +++ P + ++ H N RFP VVV SY +L
Sbjct: 486 LILAPTSVIRNWVAEAKKFAP-----AMKVLILHGEN--RKERFPFIKNYHVVVTSYPLL 538
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
R + + + +W ++++DE+H ++ ++ + A A + + L+GTP +
Sbjct: 539 IRDIERLQKFEWHVVVLDEAHGIKNARAKA------AQAARALNARHRLCLTGTPMENHL 592
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ + L PG LG+ D K Y ++ Q Q + L L Q V
Sbjct: 593 GELWSLFHFLMPGYLGEQ--DAFKAYFR-NPIEKKQDPTAQ--------QRLTARL-QPV 640
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR K + LPPK I + L +++ + ++ ++A D+ + S
Sbjct: 641 LLRRTKDAVAKDLPPKTELINAVELDKAQADLYETIRATVDKRVREAIADQGIEKS---- 696
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN---------- 531
Q + + L R+ + HP + +++ A ++ + ++
Sbjct: 697 -------------QLIVLDALLKLRQ-VCCHPSLLKTESAKKVETSAKTEYLMDEMLPEL 742
Query: 532 -----KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
+++IF+ +LD ++ + E+GI +V++ G+T DR V FQ + ++ + +
Sbjct: 743 IEEGRRILIFSQFTSMLDILERMLKERGIRYVKLTGST--EDRMKPVEQFQ-NGDMPVFL 799
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGGVG+ ++A V+ + +P++ QA DRA+R GQ V ++ + T +E
Sbjct: 800 ISLKAGGVGITLTAADTVIHYDPWWNPAIEAQATDRAYRIGQKKPVFVHKLICQGTIEER 859
Query: 647 HWQNLNKSLRCVSSATNGKYDA 668
+ + ++ G DA
Sbjct: 860 IVEMQRRKSALINGLLTGNTDA 881
>gi|321479460|gb|EFX90416.1| hypothetical protein DAPPUDRAFT_232072 [Daphnia pulex]
Length = 2083
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 216/501 (43%), Gaps = 85/501 (16%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPAILR 255
P+Q+EG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 823 PYQMEGLNWLRYSWGQGTDTILADEMGLGKTIQTITFLYSLYKEGHCRGPFLVAVPLSTI 882
Query: 256 LSWAEELERWLPFCLPADIHLV--FGHRNNPV----HLTRFPR----------------- 292
++W E E W P D ++V G +++ V H F
Sbjct: 883 INWEREFETWAP-----DFYVVTYVGDKDSRVVIREHELSFEEGAVRGGNKACKIRTNSV 937
Query: 293 ---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
V++ SY ++ + +WA+L+VDE+H ++ ++ + +L+ + ++
Sbjct: 938 KFHVLLTSYELVSIDAALLNSIEWAVLVVDEAHRLKNNQ-----SKFFRILN-SYNLRYK 991
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+LL+GTP + ++FH +N L P K++ + + F D +K +
Sbjct: 992 LLLTGTPLQNNLEELFHLLNFLCPD-----KFNDLLAFTNE----------FADLAKEEQ 1036
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
++ L+ +L M+RRLK +L +P K I+R+ L + K + ++ T
Sbjct: 1037 VKRLHDMLGPH-MLRRLKADVLKNMPTKSEFIVRVELSPMQKKYYKYVLTRNFEALNSRT 1095
Query: 470 NDKTPKDSDEHDDSGACCR--------------LGKISYQELGIAKLSGFREWLSIHPVI 515
+ + D CC L Y+ + K SG LS +
Sbjct: 1096 GGQQVSLLNIMMDLKKCCNHPYLFPVASQEAPCLQNGMYETTALVKASGKLVLLSKMLRV 1155
Query: 516 AESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
+ G ++++IF+ K+LD +++F+ + + RIDG RQ A+
Sbjct: 1156 LKEQG----------HRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQDAIDR 1205
Query: 576 FQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634
F + + ++ AGG+G++ ++A VV + +P +QA RAHR GQ + V I
Sbjct: 1206 FNAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQANKVMI 1265
Query: 635 YIFCAKDTTDESHWQNLNKSL 655
Y F +++ +E Q K +
Sbjct: 1266 YRFVTRNSVEERVTQVAKKKM 1286
>gi|297812047|ref|XP_002873907.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
lyrata]
gi|297319744|gb|EFH50166.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
lyrata]
Length = 1074
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 138/605 (22%), Positives = 260/605 (42%), Gaps = 102/605 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 197 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 256
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + S+
Sbjct: 257 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREELLVAGKFD-ICVTSFEMAIKEKTSLR 312
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 313 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 366
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 367 FLLPEV-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 411
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 412 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEVVNGGGERK 456
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 457 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLVTNAGKMVLLDKLLPKLKDRDSRV 514
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC ++ + +
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 635 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 694
Query: 694 TLDQVASSDQFQE---LMKVPESSEASDFRAINTNDE-------ITAKMNDKLLEESKTD 743
T + A +F E K+ +S++ DF N ++ ++ ND E K +
Sbjct: 695 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDESKVDFKKIVSENWNDPPKRERKRN 754
Query: 744 HSPTE 748
+S TE
Sbjct: 755 YSETE 759
>gi|290994819|ref|XP_002680029.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin [Naegleria gruberi]
gi|284093648|gb|EFC47285.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin [Naegleria gruberi]
Length = 1283
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 111/464 (23%), Positives = 221/464 (47%), Gaps = 41/464 (8%)
Query: 204 FQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAIL 254
+Q++G++ + R G ++ADEMGLGKT+Q I++ + + G LV+ P
Sbjct: 491 YQIQGLQWLVSLYNNRLNG--ILADEMGLGKTIQTISLLSYLYEFKSNKGPHLVIVPLST 548
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQ 311
+WA E E+W P L + +HL + V++I Y + + +K M +
Sbjct: 549 MDNWANEFEKWCP-TLKLIRYSGTKQERQKIHLELKKQDFEVLLIQYEYITKEKKFMKKI 607
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W +I+DE H ++ S+ + VKA+ + ++ + VLL+GTP + +++ ++ L
Sbjct: 608 QWNYIIMDEGHRIK----NSDCKLVKALAEYTSRNR--VLLTGTPLQNDLKELWALLHFL 661
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
P + + +F + G + ++ ++ K + + L+ +L+ ++RR K +
Sbjct: 662 LPKIFDSS-LNFENWFNSPFAASGEKVEMTEE-EKLLIIHRLHQVLR-PFLLRREKTDVE 718
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491
QLP K +++ + L + K I D K N K +++ ++ +L K
Sbjct: 719 EQLPEKSEKVVYIDLSAMQ----KTLYQNIQDKNKIVLNGKKLRNTSLNN---TVMQLRK 771
Query: 492 ISYQELGIAKLSGFREWLS---IHPVIAESDGAADI--DVNPR----SNKMIIFAHHLKV 542
+ K + + LS + + S G ++ + P+ +++++F+ ++
Sbjct: 772 VCNHPYLFFKETEYLNNLSDETYYDWMCRSSGKFELLSRIFPKLKRTGHRVLLFSQMTQI 831
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSA 601
LD +EF+S G ++R+DG DR + V + + + ++ +GG+GL+ +A
Sbjct: 832 LDIFEEFLSHLGYEYLRLDGAVNAADRGTLVKQWNAKDSPYFVFLLSTRSGGLGLNLQTA 891
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ + +P LQA RAHR GQT +V + FC + +E
Sbjct: 892 DTVIMFDSDWNPQQDLQAMARAHRIGQTKSVLVLTFCTRTPVEE 935
>gi|443730198|gb|ELU15824.1| hypothetical protein CAPTEDRAFT_142589, partial [Capitella teleta]
Length = 850
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 143/575 (24%), Positives = 248/575 (43%), Gaps = 112/575 (19%)
Query: 205 QLEGVRFGLRRGGRC---LIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLS 257
Q+EGVR+ R RC ++ DEMGLGKT Q I++ +G L++ P + +
Sbjct: 7 QVEGVRWLAERQLRCHGCILGDEMGLGKTCQTISLLLYLKGSGQSNGPHLILSPLSVLQN 66
Query: 258 WAEELERWLPFCLPADIHLV--FGHRNN------PVHLTRFPRVVVISYTMLHRLRKSMI 309
WA+E ER+ P D+ +V G +++ + + + V+ +Y M + +
Sbjct: 67 WADEFERFAP-----DLTIVKYIGAKDDRPALQEKIRNSLYLNAVITTYEMALKDESFLR 121
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W L++DE H + + SE K ++D A+ + +LL+GTP + + ++
Sbjct: 122 SFPWFCLVIDEGHRL----KNSESLLYKILVDFEAEFR--LLLTGTP-------VQNNLS 168
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL--LKQTVMIRRLK 427
L+ L A F +V Q +++ S+G EE + L + + ++RRLK
Sbjct: 169 ELYSLLSFVAHKIFRPNLMEVFI------QKYRNLSEGS--EEASKLHDILRPFLLRRLK 220
Query: 428 QHLLVQLPPK-------------RRQIIRLLLKRSEIVSAKAAVGVINDSEK-------- 466
+L LP K ++Q +L + + + V ++N +
Sbjct: 221 TDVLHNLPVKSEVVLYHGLSALQKKQYKAILTRDASAFESNTPVSLMNIVVQLRKSVSHP 280
Query: 467 ---DATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
DA + P + EH SG L K+ L K++G
Sbjct: 281 YLFDAGVEPEPFELGEHLVTSSGKLMLLDKL----LSFLKVNG----------------- 319
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581
+K+++F+ + LD +Q++++ +G + R+DG+ +R AV SF
Sbjct: 320 ---------HKVLVFSQMTRSLDVIQDYLALRGYTYERLDGSVRGEERHLAVRSFNQDKG 370
Query: 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641
I ++ AGGVGL+ A V+F + +P LQA RAHR GQ V + K+
Sbjct: 371 TFIFLLSTKAGGVGLNLVGADTVIFFDSDFNPQNDLQAAARAHRIGQKRNVKVIRLVGKN 430
Query: 642 TTDESHWQNLNKSLRCVSSATN-GKY---------DALQEIAVEGVSYLEMSDKTDRGSE 691
T +E + K L+ S GK+ ++L I GV L +D D +E
Sbjct: 431 TLEEIIIERARKKLQLSHSVIEAGKFTTDQNKNNTESLSAILKFGVDTLFKND--DATTE 488
Query: 692 DLTLDQVASSDQFQELMKVPESSEASDFRAINTND 726
D+ +++ + MK E + SD A +T+D
Sbjct: 489 DVDFEKILGQSKNGNWMK-QEVKQTSDEDAPSTSD 522
>gi|422407908|ref|ZP_16484871.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330885778|gb|EGH19927.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. race
4]
Length = 652
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 220/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K + ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKAVEKF--SLMGHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F + +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAD---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRDEISDWMLRR-------RKDVLPNLQGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N D+ A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIMRSDTHR-------------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E G+G V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|440746070|ref|ZP_20925357.1| SNF2-like protein [Pseudomonas syringae BRIP39023]
gi|440371891|gb|ELQ08723.1| SNF2-like protein [Pseudomonas syringae BRIP39023]
Length = 650
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 210/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G++ L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIKHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N + + R + ++H R +A++++DE
Sbjct: 305 EILMVFP---QAQIAMQTFDANAGWIIVNYER---LGDFVMHANR-------FAVMVIDE 351
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 352 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 404
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 405 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLKGKQ 447
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L + E +D N SD+H
Sbjct: 448 RQTVPVILSQVE---------------RDEYNQIM--RSDQHR----------------- 473
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 474 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKLGVGCV 530
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 531 TLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 590
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 591 AEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|46125449|ref|XP_387278.1| hypothetical protein FG07102.1 [Gibberella zeae PH-1]
Length = 1627
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 156/582 (26%), Positives = 249/582 (42%), Gaps = 97/582 (16%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL G+ F +G ++ADEMGLGKT+Q ++ + +A G LVV P +
Sbjct: 455 FQLRGLNFLCLNWTKGNNVILADEMGLGKTVQTVSFLSWLRNARQQEGPSLVVAPLSVIP 514
Query: 257 SWAEELERWLP------FCLPADIH--------LVFGHRNNPVHLTRFPRVVVISYTMLH 302
+W + W P + P D LV G+ P +F ++V SY +
Sbjct: 515 AWCDTFNHWSPDLNYVVYLGPEDARNIIREHELLVDGNPKKP----KF-NILVTSYEFIL 569
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ + + W L VDE+H R R S+ + KV L++GTP +
Sbjct: 570 QDWQFLQSIKWQTLAVDEAH--RLKNRESQLYNRLVNFGIPCKV----LITGTPIQNNLA 623
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
++ ++ L PG K D + D+ ++ Q E+L L K
Sbjct: 624 ELSALLDFLNPG-----KVDIDE---DLDSLSANDAQ-----------EKLQQLHKAIAP 664
Query: 422 -MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR K+ + LPPK +IIR+ L ++ K + + DATN H
Sbjct: 665 YILRRTKETVESDLPPKTEKIIRVELSDVQLDYYKNILTRNYSALCDATNG--------H 716
Query: 481 DDS--GACCRLGKIS---YQELGIAK--LSG-FREWLSIHPVIAESDGAADID-----VN 527
+S L KIS Y G + L+G R I +IA S +D +N
Sbjct: 717 KNSLLNIMMELKKISNHPYMFPGAEEKVLAGSVRREDQIKGLIASSGKMMLLDQLLSKLN 776
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-I 586
++++IF+ +K+LD + ++ S +G F R+DG R+ A++ F + +
Sbjct: 777 KDGHRVLIFSQMVKMLDILGDYCSLRGYKFQRLDGTIAAGPRRMAINHFNADDSDDFCFL 836
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ +A V+ + +P LQA RAHR GQ VNIY +K+T +E
Sbjct: 837 LSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKRPVNIYRLVSKETVEEE 896
Query: 647 HWQN-----LNKSLRCVSSATNGKYDALQE------IAVEGVSYLEMSDKTDRGSEDLTL 695
+ L + L + T+ A +E + VEG S SED+ +
Sbjct: 897 VLERARNKLLLEYLTIQAGVTDDGKAAFKEELNKKGLRVEGPS----------SSEDIQM 946
Query: 696 DQVASSDQFQELMKVPESSEASDFRAINTNDEIT-AKMNDKL 736
S + E E E D +I N EIT K++DK+
Sbjct: 947 VLKMRSSKMFEQSGNQERLEQLDIDSILENAEITKTKVDDKI 988
>gi|401827829|ref|XP_003888207.1| SNF2-like helicase [Encephalitozoon hellem ATCC 50504]
gi|392999407|gb|AFM99226.1| SNF2-like helicase [Encephalitozoon hellem ATCC 50504]
Length = 823
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 147/646 (22%), Positives = 276/646 (42%), Gaps = 123/646 (19%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P+ +L + +Q+EG+ + + C++ADEMGLGKTLQ IA
Sbjct: 46 PRFVLHELKDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKKH 105
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN------PVHLTRFPRVVVISYTM 300
L+V P +W E ++++P + + + R + +++ + +Y M
Sbjct: 106 LIVLPKSTLANWKREFKKFMP---NYKVRVFYSSRKEMRKEAEEIMSSKWD-ACLTTYEM 161
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + DW+ +I+DE+H ++ +E + ++ + + R+ L++GTP +
Sbjct: 162 CINAKNILNTVDWSYIIIDEAHRIK-----NEHSLLSKIVRIFSCDHRL-LITGTPLQNN 215
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
++++ +N + P + A+ F K ++ D G ++ + +L Q
Sbjct: 216 VHELWALLNFIVPEIFNDAE-KFEKYVMNI------------DEGDGEAIKRIRSVL-QL 261
Query: 421 VMIRRLKQHLLVQLPPKR------------RQIIRLLLKR--SEIVSAKAAVGVI----- 461
+RR K + LPPK+ R+ R+LLKR S + S + G++
Sbjct: 262 FFLRREKVDVEEGLPPKKVINLYSKLSPMQREWYRMLLKRDLSPLGSTRDPKGMLMNVVM 321
Query: 462 ------NDSEKDATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
N + P +D+H ++SG L K+ +A L
Sbjct: 322 QLRKCCNHPYLFPDAEPEPYTNDKHIIENSGKMVMLDKL------LANLKA--------- 366
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++++IF+ +LD ++++ KG + RIDG+T RDR A+
Sbjct: 367 ---------------KGSRVLIFSQMSMMLDILEDYAMFKGYEYCRIDGSTSYRDRTEAI 411
Query: 574 HSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
+F K I ++ AGG+G++ S+A V+ + +P + LQA+DRAHR GQ V
Sbjct: 412 DTFNAEGSDKFIFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQV 471
Query: 633 NIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
++ +++T +E R V Y +LQ++ ++ + L+ S + S+
Sbjct: 472 MVFRLISENTVEE----------RIV-------YRSLQKLKLDDI-LLQGSQRNSTVSQS 513
Query: 693 LTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETD-- 750
+D +A+ + E + + S I +E T +MN KL + +D T D
Sbjct: 514 ELIDILANGIEIAE----DDGEDESIDDLIRRGEEKTREMNMKLCDFKISDTLNTNIDCY 569
Query: 751 ---DHHNNVSQYTGRIHLYSCVPGTDSRPRPLFESFRPEELDNTEH 793
NV + I G SR LF + RP ++ E+
Sbjct: 570 TWEGEDYNVKKIESFIENTQNGQGRSSRASVLFRA-RPRVVEYPEY 614
>gi|441498154|ref|ZP_20980355.1| helicase/SNF2 family domain protein [Fulvivirga imtechensis AK7]
gi|441438061|gb|ELR71404.1| helicase/SNF2 family domain protein [Fulvivirga imtechensis AK7]
Length = 975
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 118/486 (24%), Positives = 215/486 (44%), Gaps = 85/486 (17%)
Query: 191 GKLPKSLLDVILPFQLEGVRF----GLRRGGRCLIADEMGLGKTLQAIAIAACFIS---A 243
+LPK + P+Q G + + G CL AD+MGLGKT+Q + +
Sbjct: 507 AELPKHFKGELRPYQKAGYNWLHFLNQYKFGGCL-ADDMGLGKTVQTLTMLQAQKENGVE 565
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTML 301
G+ L++ P L +W E +++ P + N +++F + V++ SY ++
Sbjct: 566 GASLLIMPTSLVYNWETEAKKFTPKLKV----FTYTGTNRDKDISKFAKYDVIITSYGIV 621
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
++ + +I+DES ++ KAV + ++ + ++L+GTP +
Sbjct: 622 RLDIDLLVNYYFNYVILDESQAIKNPASNI----AKAVRKLTSRSR--LILTGTPLENST 675
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG---VRLEELNVLLK 418
D++ Q++ + PGLLG + ++ + K + +LN ++K
Sbjct: 676 MDLWSQMHFINPGLLGSQSF--------------FKNEFLNPIEKKNDEEKTRKLNAIIK 721
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSD 478
++ RR K + +LP K + +D TP
Sbjct: 722 PFIL-RRHKSQVATELPEKVENV--------------------------QYSDLTPSQEQ 754
Query: 479 EHDDSGACCR---LGKISYQELGIAKLSGFR-----EWLSIHPVIAE----------SDG 520
E++ + R L I Q L ++L + ++ HP + + D
Sbjct: 755 EYEKVKSYYRNKILENIESQGLNKSQLLLLQGLTKLRQIANHPKMVDHEYEGNSGKMEDV 814
Query: 521 AADIDVNPRSN-KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
+D R + K++IF+ +K L + + + EK I F +DG+T +DRQ V FQ +
Sbjct: 815 ILKLDNAIRDDHKILIFSQFVKHLSILADHLKEKHIDFAYLDGST--KDRQGQVERFQNT 872
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
E+K+ +I + AGG+GL+ + A V L+ +P++ QA DRAHR GQ + V Y F +
Sbjct: 873 PELKVFLISLKAGGLGLNLTKADYVFILDPWWNPAIEAQAVDRAHRIGQENKVFTYKFIS 932
Query: 640 KDTTDE 645
K+T +E
Sbjct: 933 KNTVEE 938
>gi|158286564|ref|XP_308811.4| AGAP006945-PA [Anopheles gambiae str. PEST]
gi|157020528|gb|EAA04280.4| AGAP006945-PA [Anopheles gambiae str. PEST]
Length = 871
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 203/481 (42%), Gaps = 49/481 (10%)
Query: 203 PFQLEGVRF------GLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGS------- 245
P Q EGV F GLR G ++ADEMGLGKTLQ IA+ + G
Sbjct: 255 PHQREGVAFLYECVTGLRMLEPPGCGAILADEMGLGKTLQCIALMYTLLKTGPYGKPLAK 314
Query: 246 -ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLH 302
+L+V P+ L +W E+ +WL + G N + P +++ISY ML
Sbjct: 315 RVLIVTPSSLVDNWDREITKWLRS--ERIFTFIVGPNNKLKRYAQSPHIPILIISYEMLA 372
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA--VLDVAAKVKRIVLLSGTPSLSR 360
+ + + L+ DE H ++ S VKA VL+ + +R VLL+GTP +
Sbjct: 373 KQIGELETVKFDLMFCDEGHRLKNSN-------VKAFGVLN-RLECRRRVLLTGTPIQND 424
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV-RLEELNVLLKQ 419
+ F IN + PG +G + DF Y V G L Q G+ RL ELN + +
Sbjct: 425 LQEFFSLINFVNPGAIGTYQ-DFKARYETPIVVSQRPGVLPQSIELGIERLNELNAITGR 483
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP----- 474
V+ RR ++ + LP K ++ + + A+ DSEK A N +P
Sbjct: 484 FVL-RRTQEVINRYLPDKHEVVVFCHPSALQTQLTRTALS-FYDSEKGADNAVSPLQLIT 541
Query: 475 --KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN---PR 529
K H GK + L W + P + G + +
Sbjct: 542 ILKKICNH--PSLVSVQGKGDPESLVHLLAEQLPPWQRMGPTDSAKLGIVEALLEAMLAM 599
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIG 588
K++I +++ K LD + + R+DG+T DR V +F +N+ I ++
Sbjct: 600 QEKIVIVSYYSKTLDMIGGLCDHYNYKYCRLDGSTAGPDRSRIVAAFNNPANDSFILLLS 659
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
AGG GL+ A +V + +P+ LQA R R GQ V IY + +E +
Sbjct: 660 AKAGGAGLNLIGASRLVLYDNDWNPANDLQAMSRVWRDGQRKPVFIYRLLTAYSIEERIF 719
Query: 649 Q 649
Q
Sbjct: 720 Q 720
>gi|109898913|ref|YP_662168.1| hypothetical protein Patl_2599 [Pseudoalteromonas atlantica T6c]
gi|109701194|gb|ABG41114.1| SNF2-related protein [Pseudoalteromonas atlantica T6c]
Length = 1437
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 131/475 (27%), Positives = 223/475 (46%), Gaps = 60/475 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P + + +QL G + R G CL AD+MGLGKTLQA+AI S G LV
Sbjct: 962 IPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRASDGPSLV 1020
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPRVVVISYTML 301
+ P + +W +E ++ P +I L F N + L F V+ISY +L
Sbjct: 1021 IAPTSVCFNWQQEALKFAP---TLNIKL-FADSTNTLQREMLLNDLGPF-DCVIISYGLL 1075
Query: 302 HRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP--- 356
R + + W ++ DE+ ++ +KRT KA + + K I +GTP
Sbjct: 1076 QRESEILKGVHWHSIVADEAQALKNPLAKRT------KAACALKSDFKMIT--TGTPIEN 1127
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+L+ + +F IN PGLLG K F + + V ++ L + + L VL
Sbjct: 1128 NLTELWSLFRFIN---PGLLGNIKR-FGQRFS-VPIENAHEDPLAARKAS----QALKVL 1178
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDS--EKDATN 470
+ Q ++RR+K +L +LP + IR+ + E +A A+ I+ S + +A
Sbjct: 1179 I-QPFILRRMKNQVLTELPSRTEINIRVEMSAQERDFYEALRLNAIDNISQSGQQANAGE 1237
Query: 471 DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
+ ++ ACC +L +A+ + I + ++ +
Sbjct: 1238 QRIRMLAELVKLRQACCN------PKLVMAETT-------IPSAKLAALDELLEELKLNN 1284
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
+K +IF+ + L +++ I KG + +DG+T + RQ++V++FQ E I +I +
Sbjct: 1285 HKALIFSQFVGHLQLIKQHIEAKGFSYQYLDGSTPQKQRQASVNAFQ-RGEGDIFLISLK 1343
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +E
Sbjct: 1344 AGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLVTRNTIEE 1398
>gi|94264348|ref|ZP_01288140.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
gi|93455242|gb|EAT05455.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
Length = 1285
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 219/465 (47%), Gaps = 55/465 (11%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P L + +QLEG R+ + G G CL AD+MGLGKT+QA+A+ +AG LVV
Sbjct: 827 PTGLQTSLRSYQLEGYRWLRQLGELGFGACL-ADDMGLGKTIQALALLLSQAAAGPSLVV 885
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
P + +W +E R+ P I HR + + +V+ SY++L R + +
Sbjct: 886 APTSVCRNWQQEAARFAPQL--KVIAYAGSHRRHLLKELGPQTLVICSYSLLQRDAERLA 943
Query: 310 EQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDI 364
Q W +++DE+ ++ +KR+ +A + ++ K K V+ +GTP LS + +
Sbjct: 944 GQHWQTIVLDEAQAIKNFLAKRS------RAAMRLSGKCK--VITTGTPLENHLSELWTL 995
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
F IN PGLLG + F + + + + + + + L ++R
Sbjct: 996 FRFIN---PGLLGSLER-FKRRFI-----------IPIEQQQDQQARQRLRQLLTPFVLR 1040
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSE--IVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
RLK +L +LPP+ +++ + R E + A + N ++D S
Sbjct: 1041 RLKSEVLQELPPRTDVTLQVEMGRQEASLYEALRRQALRNLEQQDEQRAPLKILSAIMKL 1100
Query: 483 SGACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
ACC RL + L AK F + +S ++ +++++F+ +
Sbjct: 1101 RRACCHPRL-VLPESNLPCAKHELFSKVVS--------------ELLENGHRILVFSQFV 1145
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
L +++ + +GIG+ +DG+T P RQ V FQ + + +I + AGG+GL+ +
Sbjct: 1146 DHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK-DLFLISLRAGGLGLNLTG 1204
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A V+ L+ +P++ QA DRAHR GQ V +Y +T +E
Sbjct: 1205 ADYVIHLDPWWNPAVEQQASDRAHRIGQDRPVTVYRLITSNTIEE 1249
>gi|281211743|gb|EFA85905.1| SNF2-related domain-containing protein [Polysphondylium pallidum
PN500]
Length = 1675
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 207/456 (45%), Gaps = 58/456 (12%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSIL----VVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ C++ +L +V P +W E RW P LP
Sbjct: 691 ILADEMGLGKTVQTISLI-CYLFERKVLEPYLIVAPLSTISNWESEFARWAP-KLP---- 744
Query: 276 LVFGHRNNP----VHLTRFPR----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327
V +R P + R PR VV+ S+ + ++ + W +I+DE H ++
Sbjct: 745 -VIIYRGKPDERKLLAKRIPRNGFIVVITSFEYIIADKQILSRHTWCYIIIDEGHRIKNK 803
Query: 328 KRTSEPEEVKAVLDVAAK---VKRIVLLSGTPSLSRPYDIFHQINMLWPGL---LGKAKY 381
A L V + K +LL+GTP + +++ +N L P + L +
Sbjct: 804 S---------AKLSVQLRQYHSKNRLLLTGTPLQNDLGELWSLLNFLLPNIFNSLDTFEQ 854
Query: 382 DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQI 441
F + + K+ + + + + L+ +L+ ++RRLK+ + QLP K+ ++
Sbjct: 855 WFNAPFANTKSAKANSLIKVNEEESLIIINRLHQVLR-YFLLRRLKKDVESQLPEKKERV 913
Query: 442 IRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501
I+ L +I ++ A + P D + + ++ + + K
Sbjct: 914 IKCNLSAMQICMYRSI----------AEYGQLPMDPNSEIYKKSKTKMRGFNNVVKQLQK 963
Query: 502 LSG-----FREWLSIHPVIAESDGAAD------IDVNPRSNKMIIFAHHLKVLDGVQEFI 550
+S EW I+ + + G D I + ++++IF ++++ + E+
Sbjct: 964 VSNHPYLFLTEW-DINEDLIRASGKFDMMDQILIKMKASGHRVLIFTQMTEIINIMVEYF 1022
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLEL 609
S + G++R+DG+T P +R V + + I ++ AGG+G++ +A V+ +
Sbjct: 1023 SIRDWGYLRLDGSTKPEERSRLVVEWNRKDSPYFIFVLSTHAGGLGMNLQTADTVIIFDS 1082
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P + LQA+DR HR GQ + VN++ + T +E
Sbjct: 1083 DWNPQMDLQAQDRCHRVGQVNRVNVFRLISASTIEE 1118
>gi|449496695|ref|XP_004160200.1| PREDICTED: LOW QUALITY PROTEIN: putative chromatin-remodeling
complex ATPase chain-like [Cucumis sativus]
Length = 1073
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 217/483 (44%), Gaps = 73/483 (15%)
Query: 194 PKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSI 246
P + + +QL G+ + +R G ++ADEMGLGKTLQ I++ G
Sbjct: 191 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPH 250
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGH-------RNNPVHLTRFPRVVVISYT 299
+VV P +W E+ R+ P G+ R N + +F V V S+
Sbjct: 251 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPDERRDIRENLLVAGKFD-VCVTSFE 306
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
M + + + W +I+DE+H ++ +E + + + R+ L++GTP +
Sbjct: 307 MAIKEKSCLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQN 360
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLL 417
++++ +N L P + + A+T+ + + G Q ++ Q K +R
Sbjct: 361 NLHELWSLLNFLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR-------- 407
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++RRLK + LPP + I+++ + + + +A + KD
Sbjct: 408 --PFLLRRLKSDVEKGLPPXKETILKVGMSQMQKQYYRALL---------------QKDL 450
Query: 478 DEHDDSGACCRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAAD 523
+ + G RL I+ Q E G +G S ++
Sbjct: 451 EVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLD--KLL 508
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEV 582
+ R ++++IF+ ++LD +++++ +G + RIDGNT DR +++ +F + +E
Sbjct: 509 PKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEK 568
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T
Sbjct: 569 FVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 628
Query: 643 TDE 645
+E
Sbjct: 629 IEE 631
>gi|344997520|ref|YP_004799863.1| SNF2-like protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965739|gb|AEM74886.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 1108
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 123/486 (25%), Positives = 229/486 (47%), Gaps = 73/486 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
+++ ++P++L ++ +Q GV++ G ++AD+MGLGKT+Q ++ FIS
Sbjct: 632 IEDTTIEIPENLNRILREYQKVGVKWLSHLYLNGFGGILADDMGLGKTVQVLS----FIS 687
Query: 243 A------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
A G LVV P L +W +E +R+ P + R+ + + +V+
Sbjct: 688 ACKDKLNGPCLVVAPTSLVYNWQQEAKRFTPDLKTVVVDGTPAKRSEIIEKLKDYDIVIT 747
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY++L R + ++++ +VDE+ H++ + S+ +AV + AK L+GTP
Sbjct: 748 SYSLLKRDIDLYKDLEFSVCVVDEAQHIKNPQSLSK----EAVSRINAKC--CFALTGTP 801
Query: 357 ---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-QDFSKGVRLEE 412
+LS + IF + + PG LG + + ++ + Q+ K ++L +
Sbjct: 802 IENNLSELWSIF---DFVLPGYLG----------THTRFSERFEKPIVRQNDEKALKLLQ 848
Query: 413 LNVLLKQTVMIRRLKQHLLVQLP------------PKRRQIIRLLLKRSEIVSAKAAVGV 460
+ +IRRLK+ +L +LP P++ I +L L KA +
Sbjct: 849 KMI---TPFVIRRLKKDVLSELPEKIETNLEVSMTPEQENIYKLYL-------LKAREDI 898
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESD 519
N+ E+ K RL +I + +L + G L + I E
Sbjct: 899 KNEIEQKGFEKSKIKIF------SILTRLRQICCHPKLFLENYEGSSGKLELFEEILE-- 950
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
DV ++ I+F+ ++L ++E I ++G + +DG+T P +R +SF S
Sbjct: 951 -----DVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKPEERIDMANSFN-S 1004
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ ++ +I + AGG GL+ + A V+ +L +P++ QA DRAHR GQ ++V ++
Sbjct: 1005 GQKQVFLISLKAGGFGLNLTGADVVILYDLWWNPAVENQAMDRAHRIGQENSVQVFRLIT 1064
Query: 640 KDTTDE 645
K+T +E
Sbjct: 1065 KNTIEE 1070
>gi|242011216|ref|XP_002426351.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510428|gb|EEB13613.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 4944
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 125/544 (22%), Positives = 239/544 (43%), Gaps = 71/544 (13%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLS 257
+QLEG+ F G C++ADEMGLGKT+Q++A + G LV+ P +
Sbjct: 2121 YQLEGLNWLLFSWHNGRNCILADEMGLGKTIQSLAFVNSVYNYGIRGPFLVIAPLSTIPN 2180
Query: 258 WAEELERWLPFCL------PADIHLV----FGHRNNPVHLTR----FPRVVVISYTMLHR 303
W E E W + A + ++ F +N+ +L + F V++ ++ ++
Sbjct: 2181 WQREFEAWTDLNVVVYHGSAASLQMIQEYEFYFKNDKGNLMKDLHKF-NVLITTFELIIT 2239
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ + +W L ++DE+H R R + E +L++ +V LLSGTP + +
Sbjct: 2240 HSQELKSFNWRLCVIDEAH--RLKNRNCKLLEGLRLLNMEHRV----LLSGTPLQNNVNE 2293
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
+F +N L P + F + + +KT + +L +LK +M+
Sbjct: 2294 LFSLLNFLEPAQFSSSDA-FLQEFGALKTES--------------EVNKLQAILK-PMML 2337
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDATNDKTPKDSDE 479
RR+K+ + L PK ++ + L + K G++ + K T+ P +
Sbjct: 2338 RRMKEDVEKSLAPKEETVVEVELTN---IQKKYYRGILERNFSFLSKGTTSSNIPNLMNT 2394
Query: 480 HDDSGACC-----RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPR 529
+ CC G ++ ++G +I S +D +
Sbjct: 2395 MMELRKCCIHPYLLNGAEEQIQIDYRNVNGDDPDAYFKALIHSSGKMVLVDKLLPKLKSN 2454
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
++++IF+ +K LD +++++ + F RIDG RQ+A+ F + + +
Sbjct: 2455 GHRVLIFSQMVKCLDILEDYLIYRKYSFERIDGRIRGDLRQAAIDRFCRPDSDRFVFLLC 2514
Query: 590 T-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
T AGG+G++ ++A V+ + +P LQA+ R HR GQ V +Y ++T + +
Sbjct: 2515 TKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQQKMVKVYRLICRNTYEREMF 2574
Query: 649 Q------NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
L+K++ + + G D +Q + +S E+ D RG+ +D+ ++ D
Sbjct: 2575 DKASLKLGLDKAVLQSMNTSQGGKDNVQ----KQLSKKEIEDLLKRGAYGAIMDEDSAGD 2630
Query: 703 QFQE 706
+F E
Sbjct: 2631 KFCE 2634
>gi|430748310|ref|YP_007215077.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430736135|gb|AGA60079.1| DNA/RNA helicase, superfamily II, SNF2 family [Thermobacillus
composti KWC4]
Length = 589
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 124/454 (27%), Positives = 210/454 (46%), Gaps = 55/454 (12%)
Query: 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELE 263
FQ EG+ F L+ L+ADEMGLGKT+QA+A + I+V I+R WA E+
Sbjct: 131 FQKEGLAF-LQHNAPTLLADEMGLGKTVQALAWISTINRFPGIIVCTKNIVR-QWAREIR 188
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLT------RFP--RVVVISYTMLHRLRKSMIEQDWAL 315
+++ + L + VH+ + P + +I Y +L ++ + E ++
Sbjct: 189 KFIEPVAAVEGQLSLFPELDMVHIINGLSPYQLPPAQFYIIHYGLLRGWKRVLPEYNFQF 248
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
L+ DE +R R +E ++L A V+ + +SGTP R +I++ +N++
Sbjct: 249 LVFDEIQELR--HRGTEKYSAASLL--AESVQNRIGMSGTPVYGRGGEIWNVMNIIEMNC 304
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN-VLLKQTVMIRRLKQHLLVQL 434
LG Y F + +C+ GY + +D E+L L ++ +M+RR KQ +L +L
Sbjct: 305 LGDWDY-FTREWCE-----GYGTDVVRD------PEQLGEYLRREGLMLRRTKQQVLDEL 352
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
PPKRR I+ + + ++ + E D+T+D + + R+G+ +
Sbjct: 353 PPKRR-IVHEIDYDESLFQKSISLALNLLQEFDSTDDYLKRGRLKQ-------RIGEETR 404
Query: 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
Q GIAK ++ + E+ ++++ H V D E + K
Sbjct: 405 QATGIAKAPFVASFVRMLLEAGET--------------VVLYGWHHAVYDIWMEEL--KD 448
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI--TAGGVGLDFSSAQNVVFLELPQS 612
VRI G ++ + F ++ E ++ II I AG GL ++ NV F EL S
Sbjct: 449 FNPVRITGTETDNQKEESKKKF-MNGETRLLIISIRAAAGLDGLQHNAHINV-FGELDWS 506
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
P + QAEDR HR GQ +V Y + +DE+
Sbjct: 507 PGVCSQAEDRLHRMGQRDSVLSYYLVSGAGSDEA 540
>gi|68637851|emb|CAI36056.1| superfamily II DNA/RNA helicase [Pseudomonas syringae pv.
phaseolicola]
Length = 652
Score = 119 bits (298), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 210/453 (46%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G++ L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIKHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N + + R + ++H R +A++++DE
Sbjct: 305 EILMVFP---QAQIAMQTFDANAGWIIVNYER---LGDFVMHANR-------FAVMVIDE 351
Query: 321 SHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 352 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 404
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 405 LPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLEGKQ 447
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L + E +D N SD+H
Sbjct: 448 RQTVPVILSQVE---------------RDEYN--RIMRSDQHR----------------- 473
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+G V
Sbjct: 474 FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCLKMGVGCV 530
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 531 TLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 590
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 591 AEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|384460157|ref|YP_005672577.1| NA/RNA helicase, SNF2 [Clostridium acetobutylicum EA 2018]
gi|325510846|gb|ADZ22482.1| NA/RNA helicase, SNF2 [Clostridium acetobutylicum EA 2018]
Length = 966
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/475 (25%), Positives = 219/475 (46%), Gaps = 86/475 (18%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+PK + +Q++G ++ L GG ++ADEMGLGKT+Q IA S + L
Sbjct: 514 IPKGFKGKLREYQIKGFKWFKTLSELGFGG--ILADEMGLGKTIQTIAFLLSEKSKKA-L 570
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML----HR 303
+VCP L +W EE+ R+ P ++ ++ H + +++ SY L H+
Sbjct: 571 IVCPTSLIYNWKEEILRFAP-----ELRVLIVHGPKRTYDMDEYDIILTSYGTLRMDIHK 625
Query: 304 LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + D+ I+DE+ +++ +K T + +KA A L+GTP +
Sbjct: 626 YKNVIF--DYC--IIDEAQNIKNPSAKNTIVIKRIKAYTRFA--------LTGTPIENNL 673
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ + L PG L +++ + K V G + L E L +L+ +
Sbjct: 674 TELWSIFDFLMPGYL------YSREKFEEKFVFGEEDNL----------ESLKLLIAPFI 717
Query: 422 MIRRLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAK--AAVGVINDSEKDATNDKTPKDSD 478
+ RR K+ ++ +LP K ++ I + IV A+ +V + + KD
Sbjct: 718 L-RRTKKEVVAELPDKIEKKFIVEMTSAQRIVYAEYIKSVKAMMKNHKDG---------- 766
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GAADID-----VNPRS 530
R+ SY L+ R+ + + P + D G+ + +
Sbjct: 767 ---------RVQIFSY-------LTRLRQ-ICLDPSLILEDYNGGSGKLKTALEIIRGHE 809
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K+++F+ L ++E + ++ I F +DG+T P+DR + V+ F +N +K+ +I +
Sbjct: 810 GKVLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKVFLISLK 869
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ +SA V+ + +P++ QA DRAHR GQ + V + AK T +E
Sbjct: 870 AGGTGLNLTSANLVIHFDPWWNPAVENQATDRAHRIGQKNVVEVIKLVAKGTIEE 924
>gi|424065954|ref|ZP_17803427.1| SNF2-like protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|408002813|gb|EKG43044.1| SNF2-like protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 644
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 83/456 (18%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G++ L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 240 LMDHQPAGIKHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 298
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV---VVISYTMLHRLRKSMIEQDWALLI 317
E I +VF + + F ++++Y L M +A+++
Sbjct: 299 E------------ILMVFPQAQ--IAMQTFDASAGWIIVNYERLGDF--VMHASRFAVMV 342
Query: 318 VDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+DE+H R EP + D+AA+V+ LL+GTP L+R ++ H + L
Sbjct: 343 IDEAH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHP 395
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+G+ + +C + + G +F K +R E + +L++ ++ +L L
Sbjct: 396 IGQLPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLK 438
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+RQ + ++L S+I E+D N SD+H
Sbjct: 439 GKQRQTVPVIL--SQI-------------ERDEYNQIM--RSDQHR-------------- 467
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+
Sbjct: 468 ---FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCIKMGV 521
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
G V + G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L
Sbjct: 522 GCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGL 581
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
QAEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 582 QDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 617
>gi|117619195|ref|YP_857375.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560602|gb|ABK37550.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 1280
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 208/467 (44%), Gaps = 62/467 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P +L+ + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 824 PAALMGPLRDYQKEGVRWLATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 882
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVF----GHRNNPVHLTRFPRVVVISYTMLHRLR 305
P + +W EE+ R+ P ++ +V R + + ++++++Y ML L
Sbjct: 883 VPKSVVTNWQEEVARFAP-----ELEVVVFDNPSEREGMIREAKAGQIILLNYGMLGSLA 937
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPY 362
+++ + W+ +++DE+ + + + + K + + + + LSGTP L +
Sbjct: 938 EALKARRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGELW 991
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+F IN PGLLG G+ + F K V+ + LL+ +
Sbjct: 992 SLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAVIS 1030
Query: 422 --MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE 479
++RRLKQ +L +LP K I + L E +AT + +
Sbjct: 1031 PFILRRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQS 1078
Query: 480 HDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
D L G + L + EW + E+ + + +++++F+
Sbjct: 1079 ADGRALMHVLSGLTRLRRLCCSPQLVMPEWSQASSKLDEAMALLEEAIG-NGHRVLVFSQ 1137
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+ +L ++ I ++ + +DG + RQ ++ F+ V + +I + AGG GL+
Sbjct: 1138 FVDLLSLLRARIEQQQWDYCYLDGGCSAKSRQESILRFR-HEAVPLFLISLKAGGTGLNL 1196
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1197 TQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1243
>gi|408391786|gb|EKJ71154.1| hypothetical protein FPSE_08660 [Fusarium pseudograminearum CS3096]
Length = 1163
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 208/502 (41%), Gaps = 74/502 (14%)
Query: 192 KLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAG- 244
KLP + + +Q GV+ + GG +I DEMGLGKT+Q IA IAA S
Sbjct: 389 KLPGDIHPSLFGYQKTGVQWLAELYKQNVGG--IIGDEMGLGKTVQLIAFIAALHYSKKL 446
Query: 245 --SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH---------------- 286
++VV PA L W E RW P + +H NP
Sbjct: 447 RRPVIVVAPATLLRQWVSEFHRWWPPLRVSILHASGSGMMNPKFEDEYDLDHYKPLATKS 506
Query: 287 ----------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
+ + V+V +YT L +++ +W ++DE H +R P
Sbjct: 507 QNAASRIVNGVAKSGHVLVTTYTGLQTYADTLLPVEWDYAVLDEGHKIR------NPNAE 560
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
V V+LSGTP + +++ + ++P LG +F + ++ QG
Sbjct: 561 ITVTCKELNTPNRVILSGTPVQNNLTELWSLFDFIYPMRLGTL-VNFRAQF-EIPIRQG- 617
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
G + + E+ LK+T+ +++RLK + LP K Q++ L +
Sbjct: 618 -GYANASNLQVMTAEKCAEALKETIGEYLLQRLKVDVAADLPEKTEQVLFCKLTEGQ--- 673
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR--------LGKISYQELGIAKLSGF 505
KA I E A ++ + D C LGK + + G KLS
Sbjct: 674 HKAYETFIKSDEVSAILNRRRQSLYGIDILRKICNHPDLLDKSLGKKAGYDFGNPKLSAK 733
Query: 506 REWLS--IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
+ + V+ P +K ++F+ ++LD +++ I E GI +VR+DG
Sbjct: 734 LQLTKDLLQKVMI-----------PNGHKTLLFSQGKQMLDIIEKCIGECGISYVRMDGE 782
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T RQ+ + F S ++ + ++ GG+G + + A ++ + +PS LQA +RA
Sbjct: 783 TPVDRRQTMIDKFNESPDIHVFLMTTRTGGLGTNLTGADRIIIFDPDWNPSTDLQARERA 842
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
R GQ V IY + T +E
Sbjct: 843 WRLGQKKPVKIYRLMTEGTIEE 864
>gi|342732994|ref|YP_004771833.1| non-specific serine/threonine protein kinase [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384456362|ref|YP_005668960.1| putative helicase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417958904|ref|ZP_12601799.1| Putative helicase [Candidatus Arthromitus sp. SFB-1]
gi|417962122|ref|ZP_12604397.1| Putative helicase [Candidatus Arthromitus sp. SFB-2]
gi|417964488|ref|ZP_12606208.1| Putative helicase [Candidatus Arthromitus sp. SFB-4]
gi|417968092|ref|ZP_12609135.1| Putative helicase [Candidatus Arthromitus sp. SFB-co]
gi|418015598|ref|ZP_12655163.1| SNF2/RAD54 family helicase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418373246|ref|ZP_12965337.1| Putative helicase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330449|dbj|BAK57091.1| non-specific serine/threonine protein kinase [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|345505933|gb|EGX28227.1| SNF2/RAD54 family helicase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984708|dbj|BAK80384.1| putative helicase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380331095|gb|EIA22201.1| Putative helicase [Candidatus Arthromitus sp. SFB-2]
gi|380334703|gb|EIA25060.1| Putative helicase [Candidatus Arthromitus sp. SFB-1]
gi|380340198|gb|EIA28819.1| Putative helicase [Candidatus Arthromitus sp. SFB-co]
gi|380341272|gb|EIA29764.1| Putative helicase [Candidatus Arthromitus sp. SFB-4]
gi|380341635|gb|EIA30109.1| Putative helicase [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 1070
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 243/521 (46%), Gaps = 82/521 (15%)
Query: 194 PKSLLDVILPFQLEGVRF--GLRRGGRC-LIADEMGLGKTLQAIAIAACFISAGSI---L 247
PK+L + +QLEG ++ L+ ++ADEMGLGKTLQ IA S+ +
Sbjct: 600 PKNLNASLRNYQLEGFKWIKTLKEYNLSGILADEMGLGKTLQTIAFLQKEYENNSLENAI 659
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-TRFPR--VVVISYTMLHRL 304
++CP L +W +E++++ P I + G++N L F +++ SY ++ +
Sbjct: 660 IICPKSLIYNWFDEIKKFAP---NLKILIFNGNKNVRSKLINEFQNYDIILTSYGIIQKD 716
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ +++ + I+DE+ +++ SK T E+ A L+GTP +
Sbjct: 717 IDLLKLKNFNICIIDEAQNIKNKSSKNTISLRELNVNYKFA--------LTGTPIENSIE 768
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ N L PG L +Y +++ G Q ++++ LN + ++
Sbjct: 769 ELWSIFNFLMPGYLY--------SYSKFRSIYGDQ----ENYTSS----NLNKKISPFIL 812
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIN------DSEKDATNDKTPKD 476
RRLK+++L +LPPK I + L + K IN + E +++NDK K
Sbjct: 813 -RRLKKNVLTELPPKIETKIMIDLNNEQ---KKLYYSYINKFKEEFNFENNSSNDKNLK- 867
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE--SDGAADID-----VN-- 527
++ L + L+ R+ VI+E S G++ ID VN
Sbjct: 868 -----------------FKML--SALTRLRQICCDPKVISEDYSYGSSKIDTLMEIVNEH 908
Query: 528 -PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
+ K+I+F++ VL +++ + I + +DG +DR V+ F N+ I +
Sbjct: 909 IKNNKKIIVFSNFTTVLGIIKDKFIKNNIKYTYLDGTIPSKDRIDIVNDFN-QNDYNIFL 967
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGG GL+ +SA+ V+ + + ++ QA DRAHR GQ + +++ K T +E
Sbjct: 968 ISLKAGGFGLNITSAEIVIHFDPWWNNAVEDQATDRAHRIGQKNTIHVIKLITKGTIEEK 1027
Query: 647 HWQNLNKSLRCVSSATNG---KYDALQEIAVEGVSYLEMSD 684
++ K ++S +Y+++ ++++E + L D
Sbjct: 1028 IFEIQEKKNILINSIIRDNELEYNSISKMSIEDLKNLFTID 1068
>gi|422591269|ref|ZP_16665915.1| SNF2-related:helicase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330878665|gb|EGH12814.1| SNF2-related:helicase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 650
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 127/486 (26%), Positives = 220/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ I K +S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTTAEIDKALESF--SLMDHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAG---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRAEIADWMLRR-------RKDVLPNLQGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
++ N D+ A+L R+ L V +D A++D
Sbjct: 460 RNEYNQIMRSDTHR-------------------FARLGALRQLLERVKVRIVADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E + GIG V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|168061453|ref|XP_001782703.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162665796|gb|EDQ52468.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 2113
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 133/513 (25%), Positives = 228/513 (44%), Gaps = 89/513 (17%)
Query: 182 SDEVVDEMIGKLPKSLLDVIL-PFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIA 237
+D+V+ I + PK + +L +QL+G+++ ++ ++ADEMGLGKT+QA++
Sbjct: 857 ADQVIAPAITEQPKYISGGVLHDYQLQGLKWLLSNFQQRKSVILADEMGLGKTIQAVSFI 916
Query: 238 ACF----ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVF--GHRNNPVHLTRFP 291
+S +LV+ P + W +E +W AD++ V G + + + +
Sbjct: 917 MALKYENLSNKPVLVIGPKSTLVGWEQEFGQW-----GADLNTVIYQGDKESRTMIRNYE 971
Query: 292 ----------RVVVISYTMLHRLRKSMIEQ-DWALLIVDESHHVRCSKRTSEPEEVKAVL 340
V+V SY L L S++E+ DWA +IVDE H V+ ++ +L
Sbjct: 972 FFTREKIPLFDVLVTSYD-LAMLDSSLLEKMDWACIIVDEGHRVKNTRSK------LGIL 1024
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY---- 396
K +LL+GTP + ++F ++ L P + A+ + V + G
Sbjct: 1025 LRRQKADFRLLLTGTPVQNTLTELFALLHFLDPVEFPDPERS-AQEFSQVDALSGAGSKG 1083
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ-------------HLLVQLPPKRRQIIR 443
+G + Q S+ L+ LL M+RRLK +L L P +R +
Sbjct: 1084 EGGVDQQVSR------LHKLLTPR-MLRRLKADVMQGMIPGKKYVEVLCALTPLQRHLYG 1136
Query: 444 LLLK-------RSEIVSAKAAVGVINDSEKDATNDKT--PKDSDEHDDSGACCRLGKISY 494
+LK R K ++ I K N P EH D+ RL
Sbjct: 1137 AILKKNYKQLNRGNTTGKKRSLNFILMDLKMVCNHPYLFPGKEPEHGDADELFRL----- 1191
Query: 495 QELGIAKLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK 553
+ SG + L+ + P + E +++++F+ +LD +++F+S
Sbjct: 1192 ----LITASGKLQVLAKLLPRLKEG-----------GHRVLLFSQMKSMLDILEDFLSHL 1236
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
F RIDG+T RQ + F +N +V I +I AGG+G++ SA V+ + +
Sbjct: 1237 DYKFCRIDGSTPASGRQKQIADFNSANSDVFIFLISTRAGGLGINLPSADTVIIYDPDFN 1296
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P + LQA+ RAHR GQ + V +Y K + +E
Sbjct: 1297 PFVDLQAQARAHRIGQRNVVLVYQLITKCSVEE 1329
>gi|378730751|gb|EHY57210.1| DNA repair and recombination protein RAD54B [Exophiala dermatitidis
NIH/UT8656]
Length = 970
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 152/637 (23%), Positives = 262/637 (41%), Gaps = 106/637 (16%)
Query: 177 RPEH------LSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLRR-GGR-CLIA 222
RP+H D V+D ++GKL + P Q EGV+F GLR GG+ C++A
Sbjct: 264 RPKHPPPGRQTVDVVLDPLLGKL-------LRPHQKEGVQFLYECVMGLREYGGQGCILA 316
Query: 223 DEMGLGKTLQAIAIAACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPA 272
D+MGLGKTL IA+ + + L+VCP L +W E +WL +
Sbjct: 317 DDMGLGKTLTTIALLWTLLRQSPVHRGPPVIRKALIVCPVSLIRNWKREFRKWLG----S 372
Query: 273 DIHLVFGHRNNPVHLTRFP----RVVVISYTMLHRLRKSMIEQDWA------LLIVDESH 322
D V + H+ F +V++I Y RLR M+ D A ++I DE H
Sbjct: 373 DRLGVLEFEDQSTHVRDFDGRVYQVMIIGY---DRLR--MVADDLAQGHPIDIVICDEGH 427
Query: 323 HVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK-- 380
++ K + +A+ + +R ++LSGTP + + + +N + G LG K
Sbjct: 428 RLKTMKN----KNAQAIESL--NTRRRIILSGTPIQNDLGEFYAMVNFVNDGCLGSQKGF 481
Query: 381 -YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR- 438
DF K + + ++ +G E ++RR L LPPK
Sbjct: 482 IRDFEKPIIRSRQPDASE----EEIERGRDASEELARTTSPFILRRTADILSDFLPPKTE 537
Query: 439 ---------------RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
R I++ + S + S+++A +I +K + ++DS
Sbjct: 538 YVLFCKPTQAQTKIYRNILKSAMFHSALRSSESAFQLITILKKLCNSPALMNPKYGNEDS 597
Query: 484 GACCRLGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
L ++ G++KL + LS + + + I N + K+++ +++
Sbjct: 598 TPSSSLTTLNEMLPEGLSKL--YHNSLSCKIRLLD-ELLQQIRAN-TNEKVVLISNYTST 653
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK--IAIIGITAGGVGLDFSS 600
L+ +++ + + ++R+DG+ + RQ V F S + ++ AGGVGL+
Sbjct: 654 LNLIEQLLVNSNLPYLRLDGSIAAKKRQGLVDQFNNSKSTQSFAFLLSAKAGGVGLNLIG 713
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A ++ ++ +P+ QA R HR+GQ IY F K +E WQ SS
Sbjct: 714 ASRLILFDVDWNPATDDQAVARIHRQGQKRHCKIYRFLIKGGIEERIWQRQVVKRALASS 773
Query: 661 ATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFR 720
G A +A + +G + T Q D+ ++L ++ E+
Sbjct: 774 IMQGGSAASSGLA----------KSSGKGGQITTFSQ----DELKDLFRLDETD------ 813
Query: 721 AINTNDEITAKMNDKLLEESKTDHSPTETDDHHNNVS 757
+ T+D I ++ S DD H N S
Sbjct: 814 GLRTHDLIECGCKGLGQKDELVKSSTQSPDDGHENSS 850
>gi|297829170|ref|XP_002882467.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
lyrata]
gi|297328307|gb|EFH58726.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
lyrata]
Length = 1055
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/606 (22%), Positives = 262/606 (43%), Gaps = 104/606 (17%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADI--------HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W E+ R+ P H+ R++ + +F + V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKFLGNPEERRHI----RDDLLVAGKFD-ICVTSFEMAIKEKTAL 306
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +
Sbjct: 307 RRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALL 360
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
N L P + + A+T+ + + G Q ++ Q K +R ++RRL
Sbjct: 361 NFLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRL 405
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486
K + LPPK+ I+++ + + + KA + KD + + G
Sbjct: 406 KSDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEAVNAGGER 450
Query: 487 CRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNK 532
RL I+ Q E G +G + L + + R ++
Sbjct: 451 KRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSR 508
Query: 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITA 591
++IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ A
Sbjct: 509 VLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRA 568
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + +E +
Sbjct: 569 GGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERA 628
Query: 652 NKSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSED 692
K L R T K + LQ + D T DR E+
Sbjct: 629 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEE 688
Query: 693 LTLDQVASSDQFQE---LMKVPESSEASDFRAINTNDE-------ITAKMNDKLLEESKT 742
T + A +F E K+ +S++ DF N ++ ++ ND E K
Sbjct: 689 ATAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKR 748
Query: 743 DHSPTE 748
++S +E
Sbjct: 749 NYSESE 754
>gi|46111317|ref|XP_382716.1| hypothetical protein FG02540.1 [Gibberella zeae PH-1]
Length = 1163
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 208/502 (41%), Gaps = 74/502 (14%)
Query: 192 KLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAG- 244
KLP + + +Q GV+ + GG +I DEMGLGKT+Q IA IAA S
Sbjct: 389 KLPGDIHPSLFGYQKTGVQWLAELYKQNVGG--IIGDEMGLGKTVQLIAFIAALHYSKKL 446
Query: 245 --SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH---------------- 286
++VV PA L W E RW P + +H NP
Sbjct: 447 RRPVIVVAPATLLRQWVSEFHRWWPPLRVSILHASGSGMMNPKFEDEYDLDHYKPLATKS 506
Query: 287 ----------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
+ + V+V +YT L +++ +W ++DE H +R P
Sbjct: 507 QKAASRIVNGVAKSGHVLVTTYTGLQTYADTLLPVEWDYAVLDEGHKIR------NPNAE 560
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
V V+LSGTP + +++ + ++P LG +F + ++ QG
Sbjct: 561 ITVTCKELNTPNRVILSGTPVQNNLTELWSLFDFIYPMRLGTL-VNFRAQF-EIPIRQG- 617
Query: 397 QGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS 453
G + + E+ LK+T+ +++RLK + LP K Q++ L +
Sbjct: 618 -GYANASNLQVMTAEKCAEALKETIGEYLLQRLKVDVAADLPEKTEQVLFCKLTEGQ--- 673
Query: 454 AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR--------LGKISYQELGIAKLSGF 505
KA I E A ++ + D C LGK + + G KLS
Sbjct: 674 HKAYETFIKSDEVSAILNRRRQSLYGIDILRKICNHPDLLDKSLGKKAGYDFGNPKLSAK 733
Query: 506 REWLS--IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN 563
+ + V+ P +K ++F+ ++LD +++ I E GI +VR+DG
Sbjct: 734 LQLTKDLLQKVMI-----------PNGHKTLLFSQGKQMLDIIEKCIGECGISYVRMDGE 782
Query: 564 TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRA 623
T RQ+ + F S ++ + ++ GG+G + + A ++ + +PS LQA +RA
Sbjct: 783 TPVDRRQTMIDKFNESPDIHVFLMTTRTGGLGTNLTGADRIIIFDPDWNPSTDLQARERA 842
Query: 624 HRRGQTSAVNIYIFCAKDTTDE 645
R GQ V IY + T +E
Sbjct: 843 WRLGQKKPVKIYRLMTEGTIEE 864
>gi|440902038|gb|ELR52884.1| DNA excision repair protein ERCC-6 [Bos grunniens mutus]
Length = 1488
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 116/510 (22%), Positives = 219/510 (42%), Gaps = 67/510 (13%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD DE K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 479 SDAEFDEGF-KMPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 535
Query: 237 AA---------------------CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
A F G ++VCP + W +E W P A +H
Sbjct: 536 LAGLSYSKIRTRGSNYRQVLLCRLFEGLGPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLH 595
Query: 276 LV--FGHRNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
F H+ + + R +++ SY+ + ++ + DW +I+DE H +R
Sbjct: 596 ETGSFTHKKEKLVRDIARCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR------ 649
Query: 332 EPEEVKAVLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
A + +A K R ++LSG+P + +++ + ++PG LG F + +
Sbjct: 650 ---NPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFS 705
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII- 442
T+ GY + +L+ T+ ++RR+K + + LP K Q++
Sbjct: 706 VPITMGGYSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLF 762
Query: 443 -RLLLKRSEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQ 495
RL ++ ++ + +K ++N + + + H D SG L I +
Sbjct: 763 CRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDE 822
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
ELG + ++ S ++ ES + + ++++F+ ++LD ++ F+ +
Sbjct: 823 ELGEDQFGYWKR--SGKMIVVESLLKI---WHKQGQRVLLFSQSRQMLDILEVFLRAQKY 877
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
++++DG T RQ + + + + ++ GG+G++ + A V+ + +PS
Sbjct: 878 SYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPST 937
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA +RA R GQ V +Y T +E
Sbjct: 938 DTQARERAWRIGQKKQVTVYRLLTAGTIEE 967
>gi|345563719|gb|EGX46704.1| hypothetical protein AOL_s00097g452 [Arthrobotrys oligospora ATCC
24927]
Length = 920
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 130/497 (26%), Positives = 215/497 (43%), Gaps = 76/497 (15%)
Query: 203 PFQLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAIAACFISAGSI-------- 246
P Q EGV F G+R G ++ADEMGLGKTLQ IA+ + I
Sbjct: 274 PHQREGVSFLYEAVMGMRPYEGRGAILADEMGLGKTLQTIALLWTLLKQNPIYNQGPVVK 333
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHLTRFP--RVVVISYTML 301
++VCP L +W E ++WL IH+ V ++N T P V+++ Y L
Sbjct: 334 KAMIVCPVSLINNWRREFKKWLGN---ERIHVFVADGKSNVRDFTHGPVYNVMIVGYERL 390
Query: 302 HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
++ + + ++I DE H ++ T+E + +A+ +A R V+LSGTP +
Sbjct: 391 RSIQDKLKQCQVDIIIADEGHRLK----TAENKSAQAIRSLA--TPRRVVLSGTPLQNDL 444
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ-DFSKG-VRLEELNVLLKQ 419
+ F + + PG+L Y K + V+ Q + + D G R L L+ +
Sbjct: 445 REFFVMADFVNPGIL--ENYSTFKKQFENPIVKSQQPEALKADKELGNARKASLAELMNK 502
Query: 420 TVMIRRLKQHLLVQLPPKR----------------RQIIRLLLKRSEIVSAKAAVGVIND 463
V+ RR + L LPPK + II + + ++ S A+ +I
Sbjct: 503 FVL-RRTAKILTKYLPPKTDVVLFCRPTKQQLELYQAIINTSVAKRQMGSMDTALQLITL 561
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+K + K + DD K+S L AK++G + S+ +
Sbjct: 562 LKKVCNSTSLLKPKGKEDDEA------KLSNSILEEAKVAG--------SALVNSNSSGK 607
Query: 524 IDV---------NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
+ V K+++ +++ LD ++ ++ KG +R+DG T RQ V
Sbjct: 608 LKVLEKLLVTLKETTQEKVVLVSNYTSTLDILERMLNSKGFHHLRLDGKTPTNKRQDLVD 667
Query: 575 SF-QLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
F ++S++V A ++ +GG GL+ A + + +P+ LQA R HR GQ S V
Sbjct: 668 KFNRVSSDVAFAFLLSSKSGGAGLNLIGASRLFLFDSDWNPATDLQAMARVHRDGQKSHV 727
Query: 633 NIYIFCAKDTTDESHWQ 649
IY DE +Q
Sbjct: 728 YIYRMITTGCIDEKIYQ 744
>gi|237801981|ref|ZP_04590442.1| SNF2-related:helicase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024839|gb|EGI04895.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 651
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 83/456 (18%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G++ L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIKHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV---VVISYTMLHRLRKSMIEQDWALLI 317
E I +VF + + F ++++Y L M +A+++
Sbjct: 305 E------------ILMVFPQAQ--IAMQTFDASAGWIIVNYERLGDF--VMHASRFAVMV 348
Query: 318 VDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+DE+H R EP + D+AA+V+ LL+GTP L+R ++ H + L
Sbjct: 349 IDEAH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHP 401
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+G+ + +C + + G +F K +R E + +L++ ++ +L L
Sbjct: 402 IGQLPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLK 444
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+RQ + ++L S+I E+D N SD+H
Sbjct: 445 GKQRQTVPVIL--SQI-------------ERDEYNQIM--RSDQHR-------------- 473
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+
Sbjct: 474 ---FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCIKMGV 527
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
G V + G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L
Sbjct: 528 GCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGL 587
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
QAEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 588 QDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|15896682|ref|NP_350031.1| DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
gi|337738646|ref|YP_004638093.1| DNA/RNA helicase, SNF2 [Clostridium acetobutylicum DSM 1731]
gi|15026531|gb|AAK81371.1|AE007841_6 DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
gi|336291715|gb|AEI32849.1| DNA/RNA helicase, SNF2 [Clostridium acetobutylicum DSM 1731]
Length = 949
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/475 (25%), Positives = 219/475 (46%), Gaps = 86/475 (18%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+PK + +Q++G ++ L GG ++ADEMGLGKT+Q IA S + L
Sbjct: 497 IPKGFKGKLREYQIKGFKWFKTLSELGFGG--ILADEMGLGKTIQTIAFLLSEKSKKA-L 553
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML----HR 303
+VCP L +W EE+ R+ P ++ ++ H + +++ SY L H+
Sbjct: 554 IVCPTSLIYNWKEEILRFAP-----ELRVLIVHGPKRTYDMDEYDIILTSYGTLRMDIHK 608
Query: 304 LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + D+ I+DE+ +++ +K T + +KA A L+GTP +
Sbjct: 609 YKNVIF--DYC--IIDEAQNIKNPSAKNTIVIKRIKAYTRFA--------LTGTPIENNL 656
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
+++ + L PG L +++ + K V G + L E L +L+ +
Sbjct: 657 TELWSIFDFLMPGYL------YSREKFEEKFVFGEEDNL----------ESLKLLIAPFI 700
Query: 422 MIRRLKQHLLVQLPPK-RRQIIRLLLKRSEIVSAK--AAVGVINDSEKDATNDKTPKDSD 478
+ RR K+ ++ +LP K ++ I + IV A+ +V + + KD
Sbjct: 701 L-RRTKKEVVAELPDKIEKKFIVEMTSAQRIVYAEYIKSVKAMMKNHKDG---------- 749
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GAADID-----VNPRS 530
R+ SY L+ R+ + + P + D G+ + +
Sbjct: 750 ---------RVQIFSY-------LTRLRQ-ICLDPSLILEDYNGGSGKLKTALEIIRGHE 792
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
K+++F+ L ++E + ++ I F +DG+T P+DR + V+ F +N +K+ +I +
Sbjct: 793 GKVLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKVFLISLK 852
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ +SA V+ + +P++ QA DRAHR GQ + V + AK T +E
Sbjct: 853 AGGTGLNLTSANLVIHFDPWWNPAVENQATDRAHRIGQKNVVEVIKLVAKGTIEE 907
>gi|302839438|ref|XP_002951276.1| hypothetical protein VOLCADRAFT_91789 [Volvox carteri f. nagariensis]
gi|300263605|gb|EFJ47805.1| hypothetical protein VOLCADRAFT_91789 [Volvox carteri f. nagariensis]
Length = 1661
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 34/189 (17%)
Query: 306 KSMIEQDWALLIVDESHHVRCSK-RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ M W ++IVDESH++R + R ++ +A + A+ +R VLLSGTPSLSRPYD+
Sbjct: 1211 RCMAAMPWGMVIVDESHNLRTTNSREADSPHTEACVTAVARARRAVLLSGTPSLSRPYDL 1270
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTV----QGYQGQLFQ------------------ 402
+ Q++ L PG++G +K FA YCD + V + F+
Sbjct: 1271 YRQVDALQPGIVGASKQAFAFRYCDGRMVPYRITPNAAKPFRGGGGGGGAEADAPAAAAA 1330
Query: 403 -----------DFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
+ S G RL EL+ LL + VMIRRLK+ ++ QLPPKRRQ++RL +S
Sbjct: 1331 ATMMMPPRKRLETSGGSRLYELHGLLTREVMIRRLKRDIMAQLPPKRRQVVRLPYPKSRC 1390
Query: 452 VSAKAAVGV 460
S + + V
Sbjct: 1391 ASLRLILNV 1399
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 31/133 (23%)
Query: 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEEL 262
P +L+GV++GL R GRCLIADEMG+GKT+QAIA+AAC+ +L + PA LRL WAEEL
Sbjct: 1001 PEELQGVQYGLERYGRCLIADEMGVGKTVQAIALAACYEDEWPLLCIVPASLRLVWAEEL 1060
Query: 263 ERWLPF---------------------------CLPADIHLVFGHRNNPV-HLTR---FP 291
E+W+P P+ IH++ G + ++R P
Sbjct: 1061 EKWMPHLRYRRGQQYAHRYTGIQTYGHTDIRLPSWPSLIHVIEGKADRLTGRISRGQVLP 1120
Query: 292 RVVVISYTMLHRL 304
R+ + SY M+ RL
Sbjct: 1121 RITITSYEMMRRL 1133
>gi|242089493|ref|XP_002440579.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
gi|241945864|gb|EES19009.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
Length = 1127
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/510 (23%), Positives = 231/510 (45%), Gaps = 71/510 (13%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVIL-PFQLEGVRFGLRRGGRCL---IADE 224
D ++N R + ++E + + P +L L P+QLEG+++ L L +ADE
Sbjct: 407 DESKFNAGRRLDFTVHSIEEKVTEQPSALEGGELRPYQLEGLQWMLSLFNNNLNGILADE 466
Query: 225 MGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELERWLPFC-------LPAD 273
MGLGKT+Q IA+ A + AG L++ P + +W+ E + W P P +
Sbjct: 467 MGLGKTIQTIALIAYLLEKKEVAGPHLIIAPKAVLPNWSNEFKTWAPSIGTILYDGRPEE 526
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR---CSKRT 330
L+ + + V++ Y ++ + +K + + +W LIVDE H ++ C+
Sbjct: 527 RKLLREKNFDGLQFN----VLLTHYDLILKDKKFLKKVNWHYLIVDEGHRLKNHECA--- 579
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY--- 387
+ L +++R +LL+GTP + +++ +N + P + ++ +F + +
Sbjct: 580 -----LARTLVSGYQIRRRLLLTGTPIQNSLQELWSLLNFILPNIFNSSQ-NFEEWFNAP 633
Query: 388 --CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLL 445
CDV D + + + L+ +L+ ++RR K + LP K +++
Sbjct: 634 FACDVS---------LNDEEQLLIIHRLHQVLR-PFLLRRKKDEVEKYLPVK----TQVI 679
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG--ACCRLGKI------SYQEL 497
LK KA + EK A + ++ CC + YQ
Sbjct: 680 LKCDMSAWQKAYYEQVTSREKVALGSGLRSKALQNLSMQLRKCCNHPYLFVEHYNMYQRE 739
Query: 498 GIAKLSGFREWLS-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
I + SG E L + P + + +++++F+ K+LD ++ ++
Sbjct: 740 EIVRASGKFELLDRLLPKLQRA-----------GHRVLLFSQMTKLLDVLEVYLQMYNFK 788
Query: 557 FVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
++R+DG+T +R + F + +E + ++ AGG+GL+ +A V+ + +P +
Sbjct: 789 YMRLDGSTKTEERGRLLADFNKKDSEYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 848
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QAEDRAHR GQ + V +++ + + +E
Sbjct: 849 DQQAEDRAHRIGQKNEVRVFVLVSVGSIEE 878
>gi|20259462|gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
Length = 1055
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/605 (22%), Positives = 260/605 (42%), Gaps = 102/605 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFD-ICVTSFEMAIKEKTALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEAVNAGGERK 451
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSRV 509
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + +E +
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 630 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 689
Query: 694 TLDQVASSDQFQE---LMKVPESSEASDFRAINTNDE-------ITAKMNDKLLEESKTD 743
T + A +F E K+ +S++ DF N ++ ++ ND E K +
Sbjct: 690 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKRN 749
Query: 744 HSPTE 748
+S +E
Sbjct: 750 YSESE 754
>gi|22330875|ref|NP_187291.2| chromatin-remodeling protein 11 [Arabidopsis thaliana]
gi|357529491|sp|Q8RWY3.3|ISW2_ARATH RecName: Full=Putative chromatin-remodeling complex ATPase chain;
AltName: Full=ISW2-like; AltName: Full=Sucrose
nonfermenting protein 2 homolog
gi|332640865|gb|AEE74386.1| chromatin-remodeling protein 11 [Arabidopsis thaliana]
Length = 1055
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/605 (22%), Positives = 260/605 (42%), Gaps = 102/605 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFD-ICVTSFEMAIKEKTALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEAVNAGGERK 451
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSRV 509
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + +E +
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 630 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 689
Query: 694 TLDQVASSDQFQE---LMKVPESSEASDFRAINTNDE-------ITAKMNDKLLEESKTD 743
T + A +F E K+ +S++ DF N ++ ++ ND E K +
Sbjct: 690 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKRN 749
Query: 744 HSPTE 748
+S +E
Sbjct: 750 YSESE 754
>gi|334185133|ref|NP_001189827.1| chromatin-remodeling protein 11 [Arabidopsis thaliana]
gi|332640867|gb|AEE74388.1| chromatin-remodeling protein 11 [Arabidopsis thaliana]
Length = 1056
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 137/605 (22%), Positives = 260/605 (42%), Gaps = 102/605 (16%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFD-ICVTSFEMAIKEKTALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEAVNAGGERK 451
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSRV 509
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + +E +
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 630 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 689
Query: 694 TLDQVASSDQFQE---LMKVPESSEASDFRAINTNDE-------ITAKMNDKLLEESKTD 743
T + A +F E K+ +S++ DF N ++ ++ ND E K +
Sbjct: 690 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKRN 749
Query: 744 HSPTE 748
+S +E
Sbjct: 750 YSESE 754
>gi|66044767|ref|YP_234608.1| SNF2-like protein [Pseudomonas syringae pv. syringae B728a]
gi|440722586|ref|ZP_20902963.1| SNF2-like protein [Pseudomonas syringae BRIP34876]
gi|440726754|ref|ZP_20907004.1| SNF2-like protein [Pseudomonas syringae BRIP34881]
gi|63255474|gb|AAY36570.1| SNF2-related:Helicase, C-terminal [Pseudomonas syringae pv.
syringae B728a]
gi|440361028|gb|ELP98274.1| SNF2-like protein [Pseudomonas syringae BRIP34876]
gi|440365515|gb|ELQ02611.1| SNF2-like protein [Pseudomonas syringae BRIP34881]
gi|449041205|gb|AGE82155.1| DNA/RNA helicase [Pseudomonas syringae pv. actinidiae]
gi|449041325|gb|AGE82274.1| DNA/RNA helicase [Pseudomonas syringae pv. actinidiae]
Length = 650
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 83/456 (18%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G++ L+R L+AD+MGLGKT QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIKHLLQRTS-ALLADDMGLGKTRQAVIAAGIRAQGKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV---VVISYTMLHRLRKSMIEQDWALLI 317
E I +VF + + F ++++Y L M +A+++
Sbjct: 305 E------------ILMVFPQAQ--IAMQTFDASAGWIIVNYERLGDF--VMHASRFAVMV 348
Query: 318 VDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
+DE+H R EP + D+AA+V+ LL+GTP L+R ++ H + L
Sbjct: 349 IDEAH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHP 401
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
+G+ + +C + + G +F K +R E + +L++ ++ +L L
Sbjct: 402 IGQLPLN---EFC-----ERFAGS--PEFRKTLRDEISDWMLRR-------RKDVLPNLK 444
Query: 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495
K+RQ + ++L S+I E+D N SD+H
Sbjct: 445 GKQRQTVPVIL--SQI-------------ERDEYNQIM--RSDQHR-------------- 473
Query: 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555
A+L R+ L V +D A++DV+ +K+I+F + + + ++E + G+
Sbjct: 474 ---FARLGALRQLLERVKVRILADLMAELDVD---DKVILFCEYQESVATLREHCIKMGV 527
Query: 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL 615
G V + G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L
Sbjct: 528 GCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGL 587
Query: 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
QAEDRA+R GQ V + I A+DT D+ WQ L
Sbjct: 588 QDQAEDRAYRNGQLRMVVVKIPLAEDTIDQQLWQML 623
>gi|339240991|ref|XP_003376421.1| domain protein, SNF2 family [Trichinella spiralis]
gi|316974864|gb|EFV58334.1| domain protein, SNF2 family [Trichinella spiralis]
Length = 1667
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 135/523 (25%), Positives = 222/523 (42%), Gaps = 97/523 (18%)
Query: 192 KLPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC--------- 239
KLP L + P+Q EGV F +++DEMGLGKTLQ + I
Sbjct: 1082 KLPSILEGELRPYQKEGVTWLTFLKNYSLHGILSDEMGLGKTLQTLCILYMAQRMSSNNN 1141
Query: 240 -----FISAGSI-LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293
S ++ L++CP L W E ++ C AD ++ +N L + V
Sbjct: 1142 NNEEKVNSTNNVSLILCPKTLVKHWVAEANKFFGHC-TADFYVTTLDFDNVEELEKC-NV 1199
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
+V SY L R + + ++ W I+DE H +R K + KA L + A+ + I L+
Sbjct: 1200 LVASYESLRRENELLFDKHWFYCILDEGHVIRNHK----TQLFKAALQIHAEHRLI--LT 1253
Query: 354 GTPSLSRPYDIFHQINMLWPGLLG---KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
GTP + +++ L PG LG + + + K C + + + + L
Sbjct: 1254 GTPVQNSVGELWSLFEFLMPGYLGTLQQFQQRYLKPICQSRDSKATSAE---AHAGKKAL 1310
Query: 411 EELNVLLKQTV--MIRRLKQHLLVQLPPK------------RRQIIRLLLKRSEIVSAKA 456
E+L+ KQ + ++RR K + LPPK ++++ + + A A
Sbjct: 1311 EDLH---KQVLPFILRRKKVDVCRDLPPKIIQDYYCSLSPVQQELYQAYSDEVQEKVASA 1367
Query: 457 AVG-----------------------VINDSEKD---ATNDKTPKDSDEHDDSGACCRLG 490
AVG ++ DSE D +T DK + + +L
Sbjct: 1368 AVGRESRKGITFSILTYLRKLCSHPLLVTDSEPDLMQSTLDKLHLNDVQ--------QLN 1419
Query: 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV----NPRSNKMIIFAHHLKVLDGV 546
ISY K+ ++ LS + S AD D +++ +IF + L+ +
Sbjct: 1420 DISYS----GKMQALKQLLSECSI--GSSNLADCDAVQSNGISAHRALIFCQYKSALNLL 1473
Query: 547 QEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
F + KGI F+++DG+ P RQ F + + I+ GG+GL+ + A
Sbjct: 1474 CTFFTRGYFGKGISFLKMDGSVEPERRQELAQQFNSDPSIDLLILTTQIGGLGLNLTGAD 1533
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+F + +P +QA DRAHR GQT VN+Y ++ T +E
Sbjct: 1534 VVIFFDHDWNPCRDIQAMDRAHRIGQTRTVNVYRLISQGTLEE 1576
>gi|340720108|ref|XP_003398485.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54B-like [Bombus terrestris]
Length = 824
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 218/493 (44%), Gaps = 63/493 (12%)
Query: 197 LLDVILPFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIAACFISAGS--- 245
L++V+ P Q G+ F GL+ ++ADEMGLGKTLQ I I + G
Sbjct: 227 LVNVLRPHQRHGIVFLYECIMGLKISNYFGAILADEMGLGKTLQCITIIWTLLKKGPYGY 286
Query: 246 -----ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISY 298
IL+V P+ L SW +E + WL F + V +N + R V++ISY
Sbjct: 287 PILKYILIVTPSCLCNSWNKEFKHWLGFHRISP--YVVDAKNKTKDFKKHIRNSVMIISY 344
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
ML R + + E + L+I DE H + + ++ + K + ++ K KR ++L+GTP
Sbjct: 345 DMLTRCEQEVEEIPFNLIICDEGHRL----KNNDIKAAKILHNL--KCKRRIILTGTPIQ 398
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ + F I+ + P +LG + +F Y K + Q D + E N L +
Sbjct: 399 NNLQEFFTLIDFVNPTILG-SNSEFKNYY--EKPIVASQCPTAPDHVVSLGTERANELRE 455
Query: 419 QT--VMIRRLKQHLLVQLPPKRRQII--RLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
+T ++RR ++ + LP K I+ RL +++ ++ S D+ +K P
Sbjct: 456 KTKCFILRRTQETINKYLPSKHELIVFCRLSIEQQDLYSQVT----------DSWFNKNP 505
Query: 475 KDSDEHDDS-----GACCRLGKISYQE---------LGIAKLSGFREWLSIHPVIAESDG 520
+++ + C ++ Y E GI K S ++ S V
Sbjct: 506 SNNNISHLTVITALKKICNHPELFYNEKTELFCIDSKGIHKTSNIKD--STKTVYYGKIS 563
Query: 521 AADI---DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
+ K+++ +++ + LD ++ + +G+ F+R+DG+T R + F
Sbjct: 564 IVQTLLRNXKKTEEKLVLVSYYTQTLDILETVCNREGLQFLRLDGSTTSNTRSKIIERFN 623
Query: 578 LSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
+N+ K+ ++ AGGVGL+ A ++ + +P+ QA R R GQ V I
Sbjct: 624 STNDNSKVFLLSAKAGGVGLNLPGASRLILFDSDWNPASDSQAMARIWRDGQKKDVYILR 683
Query: 637 FCAKDTTDESHWQ 649
T +E +Q
Sbjct: 684 LLTTGTIEEKIFQ 696
>gi|423197402|ref|ZP_17183985.1| hypothetical protein HMPREF1171_02017 [Aeromonas hydrophila SSU]
gi|404631090|gb|EKB27726.1| hypothetical protein HMPREF1171_02017 [Aeromonas hydrophila SSU]
Length = 1276
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 208/469 (44%), Gaps = 66/469 (14%)
Query: 194 PKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249
P L+ + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV
Sbjct: 820 PDELMGPLRDYQKEGVRWLATLAHHGFGACL-ADDMGLGKTLQALIVLRMRQHLGPALVV 878
Query: 250 CPAILRLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
P + +W EE+ R+ P F PA+ R V R ++++++Y ML
Sbjct: 879 VPKSVVTNWQEEVARFAPELEVVVFDNPAE-------REGMVREARAGQIILLNYGMLGS 931
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
L +++ + W+ +++DE+ + + + + K + + + + LSGTP L
Sbjct: 932 LAEALKSRRWSSMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGE 985
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ +F IN PGLLG G+ + F K V+ + LL+
Sbjct: 986 LWSLFTFIN---PGLLGSL------------------GEFKRRFGKAVKDPQHMALLRAV 1024
Query: 421 V---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RRLK +L +LP K I + L +E +AT + +
Sbjct: 1025 ISPFILRRLKHQVLTELPDKTEIIHHISLSPAE------------RQLYEATRREVVQQV 1072
Query: 478 DEHDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
D L G + L + +W + E+ + ++ +++++F
Sbjct: 1073 QSADGRALMHVLSGLTRLRRLCCSPQLVMPDWAEASSKLDEAMALLEEAID-GGHRVLVF 1131
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ + +L ++ I ++ + +DG + RQ ++ F+ V + +I + AGG GL
Sbjct: 1132 SQFVDLLSLLRTRIEQRQWDYCYLDGGCSAKARQDSILRFR-HEAVPLFLISLKAGGTGL 1190
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1191 NLTQADTVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1239
>gi|374703682|ref|ZP_09710552.1| SNF2-related protein [Pseudomonas sp. S9]
Length = 877
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 135/513 (26%), Positives = 228/513 (44%), Gaps = 96/513 (18%)
Query: 173 WN---PCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADE 224
WN P R + + E K+P+ L + P+Q++G+ + L GG L+AD+
Sbjct: 380 WNGGEPIRSFAHRLQALPEFKAKVPRDLNAKLRPYQVQGLAWMQALSELEMGG--LLADD 437
Query: 225 MGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGH 280
MGLGKTLQ +A AG + L+V P L +W +E R+ P +H
Sbjct: 438 MGLGKTLQTLAHVLGEKQAGRLQQPALIVMPTSLIPNWQDEAARFAPSLRVLALH--GSK 495
Query: 281 RNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340
R + L VV+ +Y +L R K++ ++ L+I+DE+ +++ P A+
Sbjct: 496 RRSLFKLIDQHDVVLTTYALLPRDLKALSAHNYRLMILDEAQNIK------NPRSKTAIA 549
Query: 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQL 400
+ ++ + L+GTP + +++ N L P LG AK F++ Y QG +
Sbjct: 550 AGQIRARQRLCLTGTPLENHLGELWSLFNFLMPDWLGDAK-SFSRDYRTPIEKQGNEQ-- 606
Query: 401 FQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK----------------------- 437
RL L+ +K V+ RR KQ + +LPPK
Sbjct: 607 --------RLAHLHGRIKPFVL-RRKKQDVTRELPPKTEMTYWVDLSAAQRDRYEALRLA 657
Query: 438 -----RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
R +I R L RS+IV +A + + + A D + DE D S GK+
Sbjct: 658 MDKKVRAEISRQGLARSQIVILEALLRL-----RQACCDL--RLLDESDPSLKSGDSGKL 710
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
S A LS + + AE K+++F+ +L ++ +
Sbjct: 711 S------ALLSMLEQ------LFAE------------GRKVLLFSQFTSMLALIETELIA 746
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
+ I +V++ G+T +DR++ V FQ + + I +I + AGG GL+ ++A V+ + +
Sbjct: 747 RNISYVKLTGST--QDRRTPVEQFQ-AGDHSIFLISLKAGGAGLNLTAADTVIHFDPWWN 803
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P+ QA DRA+R GQ V +Y + + +E
Sbjct: 804 PASEAQASDRAYRIGQDKPVFVYKMITRGSVEE 836
>gi|443894508|dbj|GAC71856.1| chromatin remodeling complex WSTF-ISWI, small subunit [Pseudozyma
antarctica T-34]
Length = 1106
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/470 (23%), Positives = 211/470 (44%), Gaps = 39/470 (8%)
Query: 204 FQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRL 256
+Q++G+ + + G ++ADEMGLGKTLQ I+ + G LVV P
Sbjct: 232 YQVQGLNWMISLYHNGINGILADEMGLGKTLQTISFLGYLRDFRNTPGFHLVVVPKSTLD 291
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDW 313
+W E +RW+P + R+ +H P+ V++ +Y M R + ++ + W
Sbjct: 292 NWYREFQRWVPGFNVVTLKGSKEERDEVIHKHLLPQDFDVLITTYEMCLREKSALKKLSW 351
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+I+DE+H ++ + + + + A + +L++GTP + +++ +N L P
Sbjct: 352 EYIIIDEAHRIKNV------DSMLSQIVRAFNSRSRLLITGTPLQNNLMELWSLLNFLLP 405
Query: 374 GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
+ ++ DF +++ K + Q Q+ Q K +R ++RR+K +
Sbjct: 406 DVFSNSE-DF-ESWFKGKGDEN-QDQVVQQLHKVLR----------PFLLRRVKADVEKS 452
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
L PK+ I L + +E+ + I + + DA N K + +L K
Sbjct: 453 LLPKKE--INLFVGLTEM--QRKWYKSILEKDIDAVNGGVGKKEGKTRLLNIVMQLRKCC 508
Query: 494 YQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQE 548
+ + ++ SD +D + ++++IF+ ++LD +++
Sbjct: 509 NHPYLFDGAEPGPPFTTDEHLVFNSDKMKKLDKLLRKMKANGSRVLIFSQMSRMLDILED 568
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFL 607
+ + + RIDG T DR +A+ + K + T AGG+G++ ++A VV
Sbjct: 569 YCLFRDYAYCRIDGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVVLF 628
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657
+ +P LQA DRAHR GQT V ++ F ++ +E + + LR
Sbjct: 629 DSDWNPQADLQAMDRAHRIGQTKQVYVFRFVTENAIEERILERAAQKLRL 678
>gi|399522747|ref|ZP_10763410.1| Probable global transcription activator SNF2L1 [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109611|emb|CCH39971.1| Probable global transcription activator SNF2L1 [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 1355
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 136/520 (26%), Positives = 233/520 (44%), Gaps = 74/520 (14%)
Query: 136 NPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPK 195
P+L L AG G W T +++L D + P P L E+ D
Sbjct: 862 TPLLAELAEEAGEFKAGQDWQT--HLQRLQSLRD---YQPAVPSTLQAELRD-------- 908
Query: 196 SLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251
+Q EG + R G CL AD+MGLGKT+Q +A+ + G LVV P
Sbjct: 909 --------YQQEGFAWLARLAQWGVGACL-ADDMGLGKTVQTLALLLLRAAQGPQLVVAP 959
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+ L+W E R+ P D R + +V++SY +L + + +Q
Sbjct: 960 TSVTLNWQAESNRFAPTLNIRDYQ-----RTRTLEGLGPRDLVIVSYGLLQQDADAFSKQ 1014
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQI 368
W +++DE+ ++ ++ + +A + + A + I +GTP L +++F I
Sbjct: 1015 PWISVVLDEAQAIK----NAQTKRSQAAMALQADFRLIA--TGTPLENHLGELWNLFRFI 1068
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
N P LLG ++ F++ + QG D S L+ L Q ++RRLK
Sbjct: 1069 N---PSLLG-SQDSFSQRFA-TPIEQG-------DASARRALKNL----IQPFILRRLKS 1112
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD--SDEHDDSGAC 486
+L +LP + ++ L +E +A D+ +++P ++ C
Sbjct: 1113 QVLDELPARTEITYKVPLSEAEAHQYEALRQQAVDNLSAPDEERSPLQVLTEITRLRRFC 1172
Query: 487 CRLG-KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
C I L +KL F E I E ++ +K ++F+ + L+
Sbjct: 1173 CHPSLVIPGSPLSSSKLQAFAE-------IVE-------ELLENRHKALVFSQFVDHLNI 1218
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
V+ ++ ++GI + +DG T ++RQ V++FQ + E +I +I + AGG GL+ ++A V+
Sbjct: 1219 VRAWLDKRGIHYQYLDGATPAKERQKRVNAFQ-AGEGEIFLISLKAGGSGLNLTAADYVI 1277
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L+ +P++ QA DRAHR GQ V IY ++T +E
Sbjct: 1278 HLDPWWNPAVEDQASDRAHRMGQKRPVTIYRLVTENTIEE 1317
>gi|295102130|emb|CBK99675.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
prausnitzii L2-6]
Length = 1109
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 222/493 (45%), Gaps = 62/493 (12%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL- 247
P SL + +Q +G R+ G GG ++AD+MGLGKT+Q ++ G L
Sbjct: 642 PVSLQKTLRKYQRDGYRWLRTLDGYGMGG--ILADDMGLGKTVQVLSYLLAMKQNGQTLP 699
Query: 248 --VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+VCPA L L+WAEE +++ P + HR +VV SY +L R
Sbjct: 700 SLIVCPASLVLNWAEECQKFTPELSCVVVDGDAAHRAELAESWPAADLVVTSYDLLRRDE 759
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
Q++ I+DE+ ++ ++ KAV V ++V+ L+GTP +R +++
Sbjct: 760 ALYEGQEFYACILDEAQAIK----NHTTQKYKAVCKVRSRVR--FALTGTPVENRLGELW 813
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ--DFSKGVRLEELNVLLKQTVMI 423
+ L PG L K ++C ++ + Q D + RL +L ++
Sbjct: 814 SIFSFLMPGYLPPYK-----SFC-----SRFEKPIVQEEDQTAVRRLNQLT----GPFIL 859
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR+K +L +LPPK + R+ L+ + AAV ++ EK + K D+
Sbjct: 860 RRMKSDVLKELPPKTENVYRIELEEEQRKLYLAAV--VDAREKL----QAAKPEDKMAVF 913
Query: 484 GACCRLGKI--------SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
RL +I E G AKL E +S + +G +++++
Sbjct: 914 AVLMRLREICCDPRLIADNWEGGSAKLDACAELVS-----SAVEGG---------HRILL 959
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ +L+ + + + +GI + G+T R V F EV + +I + AGG G
Sbjct: 960 FSQFTSMLELLAKRLDAEGISHFTLQGSTPKPVRAELVRRFN-GGEVSVFLISLRAGGTG 1018
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655
L+ ++A V+ + + + QA DRA+R GQ + V +Y A+DT +E + L ++
Sbjct: 1019 LNLTAADIVIHYDPWWNVAAQNQATDRAYRIGQQNPVQVYKLIAQDTIEEKIVE-LQQAK 1077
Query: 656 RCVSSATNGKYDA 668
+ ++ G D
Sbjct: 1078 QSLADTVTGTADG 1090
>gi|282898570|ref|ZP_06306558.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
gi|281196438|gb|EFA71347.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
Length = 1427
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/496 (25%), Positives = 223/496 (44%), Gaps = 75/496 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEG----VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI 241
V + +LP + + +Q+EG R G CL AD+MGLGKT+QA+A+
Sbjct: 933 VQSLQPELPSTFQAELRDYQMEGFCWLARLAHWGVGACL-ADQMGLGKTVQALAVITRNA 991
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFC--------------------LPADIHLVFGHR 281
AG L++ P + ++W E ++ P L + V R
Sbjct: 992 HAGPTLIIAPTSVCMNWVVEANKFAPTLNVIQFGANTRISDRTLSDKDLDGEETPVISSR 1051
Query: 282 NNPVHLTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVK 337
+ + ++V SY +L + + + + + +W +++DE+ ++ +KR+ +
Sbjct: 1052 QKLLDQLQPLDMLVCSYGLLQQDDVARMLSQVEWQTIVLDEAQAIKNLNTKRS------Q 1105
Query: 338 AVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394
A + + K I +GTP L +++F IN PGLLG + ++ Q
Sbjct: 1106 AAMGLKGNFKLIT--TGTPIENHLGELWNLFRFIN---PGLLGSFDSFNQRFSTPIEKHQ 1160
Query: 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
Q + +L L+ Q ++RR K +L +LP + ++ + L R E V
Sbjct: 1161 DKQAR-----------NKLKKLI-QPFLLRRTKSQVLQELPSRTEILLHVELSREEKVFY 1208
Query: 455 KA----AVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI-SYQELGIAKLSGFREWL 509
+A A+ +N+S+ D ++ ACC + +L +KL E
Sbjct: 1209 EALRRQAISKLNESDADPGKKHLQVLAEIMRLRRACCNPSLVMPNTDLSSSKLQLLGE-- 1266
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
V+AE + +K ++F+ + L ++ ++ K I + +DG+T +R
Sbjct: 1267 ----VLAE--------LLENHHKALVFSQFVDHLHIIRNYLESKSIKYQYLDGSTPMAER 1314
Query: 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
+ +V SFQ + + I +I + AGG GL+ ++A V+ + +P++ QA DRAHR GQ
Sbjct: 1315 KRSVDSFQ-AGDGDIFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQ 1373
Query: 630 SAVNIYIFCAKDTTDE 645
V IY AKDT ++
Sbjct: 1374 RPVTIYRLVAKDTIED 1389
>gi|334705549|ref|ZP_08521415.1| SWI/SNF family helicase [Aeromonas caviae Ae398]
Length = 1286
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 208/463 (44%), Gaps = 60/463 (12%)
Query: 197 LLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252
LL + +Q EGVR+ G CL AD+MGLGKTLQA+ + G LVV P
Sbjct: 833 LLTALRDYQKEGVRWMATLAHHGFGACL-ADDMGLGKTLQALMVLRMRQHLGPALVVVPK 891
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGH---RNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
+ +W EE+ R+ P ++ +VF H R + + ++++++Y ML L +++
Sbjct: 892 SVVTNWQEEVARFAPEL---EV-VVFEHPAERATLIQEAKAGQIILVNYGMLGSLSQALK 947
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFH 366
+ WA +++DE+ + + + + K + + + + LSGTP L + +F
Sbjct: 948 SRHWASMVLDEAQQI----KNAGTQRAKLLFQLDGDFR--LALSGTPIENHLGELWSLFT 1001
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MI 423
IN PGLLG +F + F K V+ +L+ + ++
Sbjct: 1002 FIN---PGLLGSLS-EFKRR-----------------FGKAVKDPRHMAMLRAVISPFIL 1040
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RRLKQ +L +LP K I + L E +AT + + D
Sbjct: 1041 RRLKQQVLTELPDKTEIIHHISLSPEE------------RQLYEATRREVVQQVQSADGR 1088
Query: 484 GACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
L G + L + EW + E+ + ++ +++++F+ + +
Sbjct: 1089 ALMHVLSGLTRLRRLCCSPQLVMPEWSQTSSKLDEAMNLLEEAID-GGHRVLVFSQFVDL 1147
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
L ++ I ++ + +DG + RQ ++ F+ V + +I + AGG GL+ + A
Sbjct: 1148 LSLLRSRIEQRQWDYCYLDGGCSAKSRQESILRFR-HEAVPLFLISLKAGGTGLNLTQAD 1206
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ L+ +P++ QA DRAHR GQT V +Y + T +E
Sbjct: 1207 TVLHLDPWWNPAVEDQASDRAHRMGQTQPVTVYRLVCEQTVEE 1249
>gi|426403646|ref|YP_007022617.1| helicase/SNF2 family protein [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860314|gb|AFY01350.1| helicase/SNF2 family protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 1331
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 224/477 (46%), Gaps = 66/477 (13%)
Query: 192 KLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---A 243
KLP S+ + +Q EGV+ F LR G L+AD+MGLGKTLQA++ +
Sbjct: 852 KLPGSVKAELKTYQHEGVQWLLDLFTLRMG--ALLADDMGLGKTLQALSFLDLLRTREQL 909
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-TRFPRVVVISYTMLH 302
G +LVV P+ L +W E+ ++ P LP +I H L + P VVV +Y +L
Sbjct: 910 GQVLVVVPSSLVYNWESEVAKFTP-ELPFEIFTSKDHDRLGKRLEAKEPLVVVTTYGLLM 968
Query: 303 RLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + + +W +LI DE+ +++ +KRTS + A + L+GTP +
Sbjct: 969 ENDEFLSQYNWNVLIFDEAQNLKNITAKRTSSARMLNARFKMC--------LTGTPMENH 1020
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ + ++++ PG LGK DF + + + + V L +D +E+L + K
Sbjct: 1021 FGEFYSLLDLVVPGCLGKYD-DFRRHFVNTEVV------LLED------VEDLKLKTKPL 1067
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLL--KRSEIVS--AKAAVGVINDSEKDATNDKTP-- 474
+M RR K+ +L QLP K+ + + K+ +I A A I D+ ++A ++
Sbjct: 1068 IM-RRTKKEILDQLPEKQETKVSIAFEDKQKQIYRDIAIAYNQRIQDTIREAGESQSQLQ 1126
Query: 475 ------KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ D GA L ++ Y++ KL + S+ +I + A
Sbjct: 1127 MLTALLRLRQACSDPGA---LPEVKYEKTP-PKLEALMD--SLQEIIESGESA------- 1173
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
++F L+ L+ ++ + GI + G + RQ + F +N + ++
Sbjct: 1174 -----LVFTQFLQTLERTEKLLKAVGIPVFVLHGAIPTKQRQKILKDFNETNGGAVLVMT 1228
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ GGVGL+ + A V LE +PS+ QA DRAHR GQ AV ++ + ++ +E
Sbjct: 1229 LKTGGVGLNLTKASYVFHLEPWWNPSVENQATDRAHRLGQRKAVQVFRYIMHESLEE 1285
>gi|350408475|ref|XP_003488415.1| PREDICTED: DNA repair and recombination protein RAD54B-like [Bombus
impatiens]
Length = 820
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/501 (24%), Positives = 217/501 (43%), Gaps = 83/501 (16%)
Query: 197 LLDVILPFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIAACFISAG---- 244
L++V+ P Q G+ F GL+ ++ADEMGLGKTLQ I I + G
Sbjct: 227 LVNVLRPHQRHGIVFLYECIMGLKVSNHFGAILADEMGLGKTLQCITIIWTLLKKGPYGY 286
Query: 245 ----SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISY 298
IL+V P+ L +W +E ++WL F + V +N + R V++ISY
Sbjct: 287 PILKYILIVTPSCLCNNWNKEFKQWLGFHRISP--YVVNAKNKAKDFKKHIRNSVMIISY 344
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
+L R + + E + L+I DE H + + ++ + K + ++ K KR +LL+GTP
Sbjct: 345 DLLTRCEQEVKEIPFNLIICDEGHRL----KNNDIKAAKILYNL--KCKRKILLTGTPIQ 398
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ + F I+ + P +LG + +F Y K + Q D + E N L +
Sbjct: 399 NNLQEFFTLIDFVNPTILG-SNSEFKNYY--EKPIVASQCPTAPDHVVSLGTERANELRE 455
Query: 419 QT--VMIRRLKQHLLVQLPPKRRQII--RLLLKRSEIVS--------------------A 454
+T ++RR ++ + LP K I+ RL +++ ++ S
Sbjct: 456 KTKCFILRRTQETINKYLPSKHELIVFCRLSIEQQDLYSQVTDSWFNKSLSDNNIPHLTV 515
Query: 455 KAAVGVINDSEKDATNDKTP-----KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
A+ I + + N+KT + DS GKIS + + L E
Sbjct: 516 ITALKKICNHPELFYNEKTELFCIDSKTSNIKDSTKTVYCGKISIVQTLLRNLKKTEE-- 573
Query: 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
K+++ +++ + LD ++ +++G+ F+R+DG+T R
Sbjct: 574 ----------------------KLVLVSYYTQTLDILETVCNKEGLQFLRLDGSTTSNTR 611
Query: 570 QSAVHSFQ-LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
+ F S++ K+ ++ AGGVGL+ A ++ + +P+ QA R R GQ
Sbjct: 612 SKIIERFNSTSDKSKVFLLSAKAGGVGLNLPGASRLILFDSDWNPASDSQAMARIWRDGQ 671
Query: 629 TSAVNIYIFCAKDTTDESHWQ 649
V I T +E +Q
Sbjct: 672 KKDVYILRLLTTGTIEEKIFQ 692
>gi|302135049|ref|ZP_07261039.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 650
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 208/453 (45%), Gaps = 77/453 (16%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAE 260
++ Q G+R L+R L+AD+MGLGK+ QA+ A +LV+ L ++W
Sbjct: 246 LMDHQPAGIRHLLQRTS-ALLADDMGLGKSRQAVIAARIRAQDKPVLVIVLNSLIINWQR 304
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDE 320
E+ P A I + N ++++Y L M + ++++DE
Sbjct: 305 EILMVYP---DARISMQTFDANAGW--------IIVNYERLGDF--VMHASCFPVMVIDE 351
Query: 321 SHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+H R EP + D+AA+V+ LL+GTP L+R ++ H + L +G+
Sbjct: 352 AH------RLKEPTAAWTRHGFDIAAQVQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQ 404
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKR 438
+ +C + + G +F K +R E + +L++ ++ +L L K+
Sbjct: 405 LPLN---EFC-----ERFAGS--PEFRKTLRAEISDWMLRR-------RKDVLPNLKGKQ 447
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498
RQ + ++L + E +D N SD+H
Sbjct: 448 RQTVPVVLSKIE---------------RDEYNQIM--RSDQHR----------------- 473
Query: 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
A+L G R+ L V SD A++DV+ +K+I+F + + + ++E + GIG V
Sbjct: 474 FARLGGLRQLLERVKVRIVSDLMAELDVD---DKVILFCEYQESVATLREHCLKMGIGCV 530
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+ G+ P+ RQ A+ +FQ + ++ I +A G G + ++A V FL LP +P L Q
Sbjct: 531 TLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQ 590
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
AEDRA+R GQ V + I A DT D+ WQ L
Sbjct: 591 AEDRAYRNGQLRMVVVKIPLADDTIDQQLWQML 623
>gi|84998372|ref|XP_953907.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1 )
[Theileria annulata]
gi|65304905|emb|CAI73230.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1
homologue), putative [Theileria annulata]
Length = 1816
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 161/612 (26%), Positives = 265/612 (43%), Gaps = 108/612 (17%)
Query: 180 HLSDEVVDEMIG-KLPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIA 235
HL D V + + P+ L D +QL G+ + ++RG L+ADEMGLGKT+Q I+
Sbjct: 780 HLRDNVPNSIYKVSEPRKLRD----YQLTGLNWMVNRMKRGLSVLLADEMGLGKTVQTIS 835
Query: 236 IAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN-----NPVH 286
+ F+ G L++ P +W E E WLP A+ +G+
Sbjct: 836 LVGHFMYKEFLIGPYLIIVPQSTIDNWMREFEAWLP---QANAVCYYGNATAREMIRQRE 892
Query: 287 LTRF----------------PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SK 328
LTR ++ S L LR+ W L++VDE+H ++ SK
Sbjct: 893 LTRIFVPGKGERYKCDVCITTPSIINSPADLDFLRRI----SWQLMVVDEAHQLKNKNSK 948
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQIN-MLWPGLLGKAKYDFA 384
R E ++ A K +LLSGTP +L + + H IN ++P DF
Sbjct: 949 RFVE------LMQFMADYK--LLLSGTPLHNNLEELWTLLHFINPQIYPYY-----EDFR 995
Query: 385 KTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
+ Y +++ G+ +K +L L L + V+ RR+K+ + LP K +I+R+
Sbjct: 996 RRYSEIENPAAI-GE-----NKQKQLLSLQHELHEFVL-RRVKKDVEKSLPNKVERILRV 1048
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
L +I K + + E+ A N + S ++ C L K+ +
Sbjct: 1049 ELSPMQIEWYKNILA--RNYEELARNSGGSRSSLQN----ICMELKKVCNHPFLCYEPED 1102
Query: 505 FREWLSIHPVIAESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
+ WL +I S +D + + ++++IF+ +++L+ + E+++ +G R
Sbjct: 1103 RQVWL--QGLIYGSGKICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQR 1160
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+DG R+ A+ F ++ AGG+G++ +SA V+ + +P LQ
Sbjct: 1161 LDGTMGKEVRKKAMDHFNDPQSDDFCFLLSTKAGGLGINLTSADTVIIYDSDWNPQNDLQ 1220
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHW--------------QNLNKSLRCVSSATNG 664
AE RAHR GQT V IY KD+ +++ Q LNK V +G
Sbjct: 1221 AEARAHRIGQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRGDAVMFNDDG 1280
Query: 665 KY----DALQEIAVEGVSYL-----EMSDKTDRGSE--DLTLDQVASSDQFQELMKVPES 713
K + L +I G S L ++KT E D+ LD+V Q EL K +S
Sbjct: 1281 KSGFSREELAKILKFGASKLWATANPQTNKTSSTDEKLDIDLDKVL---QEAELTKENDS 1337
Query: 714 SEASDFRAINTN 725
A+D + TN
Sbjct: 1338 DLAADLLSSYTN 1349
>gi|440792199|gb|ELR13427.1| SNF2 family Nterminal domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 2160
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/480 (24%), Positives = 215/480 (44%), Gaps = 77/480 (16%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
+QLEG+ F + ++ADEMGLGKT+Q+I+ + G LV+ P
Sbjct: 318 YQLEGLNWLVFNWYQRRNSILADEMGLGKTVQSISTMWHLFTVEKIRGPFLVIAPLSTIG 377
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPV----------HLTRFPR---------VVVIS 297
W E+E W D++++ H ++ +L R V+V +
Sbjct: 378 HWKREVENW------TDMNVIVYHGSSAAREVIRKYEWNYLDAKGRAIPGLFKWNVLVTT 431
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLSGTP 356
Y M+ + DW ++DE+H ++ + K ++++ I+LL+GTP
Sbjct: 432 YEMILADSALLKTIDWRYTVIDEAHRLKN-------KNSKLLIELQTYSFSDILLLTGTP 484
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ +++ +N L P ++ DF + D+K Q QG L+ L
Sbjct: 485 LQNNTEELWSLLNFLDPEKFHSSE-DFMTDFGDLKQTQQVQG--------------LHDL 529
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-----KDATND 471
LK ++RR+K+H+ + PK I+ + L V+ K I + K +
Sbjct: 530 LKPH-LLRRMKEHVEKSIAPKEETIVEVEL----TVTQKKYYKAIYEKNTAFLTKGCSGG 584
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAK--LSGFREWLSIHPVIAESDGAADI--DVN 527
P + CC Y G+ L+G + SI+ ++ +S G + +
Sbjct: 585 NVPNMLNIMMQLRKCCNH---PYLINGVESQILNGLSDPESIYQMLIKSSGKLVLIDKLL 641
Query: 528 PR----SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEV 582
P+ +K++IF+ ++VLD ++++++ + + RIDG DRQ+A+ F + ++
Sbjct: 642 PKLISGGHKVLIFSQMVRVLDILEDYLNFRKFTYERIDGGVRGNDRQAAIDRFCKKGSDR 701
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGGVG++ ++A V+ + +P +QA+ R HR GQT V +Y + T
Sbjct: 702 NVFLLCTRAGGVGINLTAADTVIIFDSDWNPQNDIQAQARCHRIGQTQMVKVYRLITRGT 761
>gi|229817614|ref|ZP_04447896.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785403|gb|EEP21517.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 1229
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/538 (25%), Positives = 244/538 (45%), Gaps = 87/538 (16%)
Query: 144 NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSD-EVVDEMIGKLPKSLLDVIL 202
N+ IEV G L+ +L + +N ++SD +V+D +P++L ++
Sbjct: 705 NAGRIEVPGYQAFLLD--SQLPDETKSASFN----RYVSDVKVIDPQRYAVPEALHGILR 758
Query: 203 PFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWA 259
P+Q+EG ++ +G ++ADEMGLGK+LQ + + G L+VCPA L +WA
Sbjct: 759 PYQVEGFQWLATLCDKGFGGILADEMGLGKSLQLLTLLESRKGKGCSLIVCPASLVYNWA 818
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHL---------------TRFPRVVVISYTMLHRL 304
E E++ P + +V G + L P +++ SY + L
Sbjct: 819 AECEKFTP---DQRVEVVAGSKAERRRLLSEVAGLASAKNEGRKERPDIIITSYDL---L 872
Query: 305 RKSMIEQD---WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI-----VLLSGTP 356
R+ + E D + + +DE+ +++ T++ +A VKR+ L+GTP
Sbjct: 873 RRDIDEYDGCAFDCVALDEAQYIK--NHTTK---------IAKAVKRLEAHYRFALTGTP 921
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+R +++ + L PG+LG F + Y Q L + V +L L
Sbjct: 922 IENRLSELWSIFDFLMPGMLGSYAR-FRERY--------EQPILAPGPDQSVMAGKLQAL 972
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQI--IRLLLKRSEIVSA-----KAAVGVINDSEKDAT 469
+ + RRLK+ +L LP K + +RL ++ ++ +A +A++ + D++ D
Sbjct: 973 VGLFIK-RRLKRDVLTDLPDKFETVVTVRLQGEQRKLYAAHEQRLRASLNSVEDADFDTN 1031
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQEL--GIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+ + + CC K+ Y++ AKL +I ++A A
Sbjct: 1032 RIRILAELTLLRE--ICCA-PKLVYEDANGASAKLD------AIDDLVASCMDAG----- 1077
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K+++F+ LD + + + G+ F I G T R R V+ F + ++V + +I
Sbjct: 1078 ---KKVLVFSQFTSFLDLIGDRFTAHGVPFYTITGETPKRKRVDLVNQFNM-DDVPVFLI 1133
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AG GL+ + A V+ + + + QA DRAHR GQT VN+Y A+ T +E
Sbjct: 1134 SLKAGNTGLNLTGASVVIHADPWWNAAAQSQATDRAHRIGQTQDVNVYQIVAQHTIEE 1191
>gi|302813768|ref|XP_002988569.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
gi|300143676|gb|EFJ10365.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
Length = 601
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/460 (24%), Positives = 211/460 (45%), Gaps = 39/460 (8%)
Query: 200 VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAI 253
V+ +QL GV++ + + G ++AD+MGLGKT+Q I A + G LV P
Sbjct: 42 VLKSYQLRGVQWMMALYQNGYSGILADQMGLGKTVQTITFIAHLMENGVKGPFLVCAPLS 101
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR--FPR------VVVISYTMLHRLR 305
+W E+ RW P H G + R PR V+V SY +L
Sbjct: 102 TLANWTREISRWCPSMKSLLYH---GTKEERAEKRRKHMPRNGESLPVIVTSYEVLMVDI 158
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ W ++VDE H ++ + +E+K + K++ +LL+GTP ++ +++
Sbjct: 159 SHFKQFKWTYVVVDEGHRLK-NHDCKLFKELKKM-----KIENSLLLTGTPLQNKLPELW 212
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQ---DFSKGVRLEELNVLLKQTVM 422
+N + P + DF + + + + + S + +++L+ +L+ +
Sbjct: 213 SLLNFILPDIFSSLS-DFQTWFAFAERENNSDEERDETRIEASPPIVVKKLHDILR-PFL 270
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR+K + LP K I L + S++ + E+ TP S +
Sbjct: 271 LRRMKSEVEKTLPKKTE--ILLYAQMSKMQKDFDCKLIRRTLEEYLHQAATPGTSRKKRL 328
Query: 483 SGACCRLGK-ISYQELGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRSNKMII 535
+ C +L K ++ +L + + +W + + AE + + R ++++I
Sbjct: 329 NNVCMQLRKNCNHPDLLRQEFNQDYDWPPVEQLTAECGKLKFLLDRLLPPLKSRGHRVLI 388
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ K+LD ++ + E+G+ R+DGN DRQ V +F S E + ++ AGG+G
Sbjct: 389 FSQMTKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITF--SREGFVFLLSTRAGGLG 446
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
++ +SA + + +P + LQA DR HR GQT V++Y
Sbjct: 447 INLTSADTAIIYDSDWNPQMDLQAMDRCHRIGQTRPVHVY 486
>gi|334185131|ref|NP_001189826.1| chromatin-remodeling protein 11 [Arabidopsis thaliana]
gi|332640866|gb|AEE74387.1| chromatin-remodeling protein 11 [Arabidopsis thaliana]
Length = 1057
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 216/473 (45%), Gaps = 73/473 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 192 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 251
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 252 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFD-ICVTSFEMAIKEKTALR 307
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 308 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 361
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 362 FLLPEI-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 406
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 407 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEAVNAGGERK 451
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 452 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLITNAGKMVLLDKLLPKLKERDSRV 509
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + +E
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEE 622
>gi|224044013|ref|XP_002188531.1| PREDICTED: chromodomain helicase DNA binding protein 1-like-like
[Taeniopygia guttata]
Length = 888
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 130/529 (24%), Positives = 239/529 (45%), Gaps = 76/529 (14%)
Query: 203 PFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAI 253
P+QLEGV + + G C++ DEMGLGKT Q I++ S L++CP
Sbjct: 38 PYQLEGVNWLVQCYEAQHG--CILGDEMGLGKTCQTISLLLYLTKKLSNKARFLILCPLS 95
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-------TRFPRVVVISYTMLHRLRK 306
+ +W EELER+ P + I V G + L + FP ++ +Y + +
Sbjct: 96 VLSNWKEELERFAPGL--SFISYV-GSKEERRKLQENLEGDSHFP-TLLTTYEICLKDAA 151
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ +WA L+VDE+H R + S + + + + LL+GTP + +++
Sbjct: 152 FLKSFNWAALVVDEAH--RLKNQNSLLYKTLSEFSIGFSL----LLTGTPIQNSLQELYS 205
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE-----ELNVLLKQTV 421
++++ P + + Q + F ++ +G+ E EL+ LL Q
Sbjct: 206 LLSLIEPDIFPQE-----------------QVKEFAEYYQGIEKESEPAKELHSLL-QPF 247
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR+K + +LP K + ++L K I + DA ++T + +
Sbjct: 248 LLRRVKSEVAAELPKK----VEVVLYHGMSALQKKYYKAILTKDLDAFENETGRKVTLQN 303
Query: 482 DSGACCRLGK-ISYQELGIAKLSGFR-EWLSIHPVIAESDGAADI------DVNPRSNKM 533
+L K +++ L SG E I I E+ G + + +++
Sbjct: 304 ---VLIQLRKCVAHPYL----FSGVEPEPFEIGDHIVEASGKMCLLDKLLSFLYAGGHRV 356
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++F+ ++LD +Q+++ +G + R+DG+ +R A+ +F + I ++ AGG
Sbjct: 357 LLFSQMTQLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNFG-QQPIFIFLLSTRAGG 415
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653
VG++ ++A V+F + +P LQA RAHR GQ V I +DT +E ++
Sbjct: 416 VGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEIIYRRAAS 475
Query: 654 SLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSD 702
LR ++ G AL +G + L++S+ G LD++ SS+
Sbjct: 476 KLRLTNAIVEGGQFALGAPKPQGTAELQLSEILKFG-----LDKLLSSE 519
>gi|323692122|ref|ZP_08106366.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
WAL-14673]
gi|323503809|gb|EGB19627.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
WAL-14673]
Length = 1079
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 132/497 (26%), Positives = 224/497 (45%), Gaps = 69/497 (13%)
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-------CFISAGSI-----LVVCPAI 253
L+ RFG ++AD+MGLGKTLQ I + A C +AG LV+CPA
Sbjct: 623 LDDYRFG------GILADDMGLGKTLQTITLLAAEKEERACGTAAGMAQPSVSLVICPAS 676
Query: 254 LRLSWAEELERWLPFCLPADIHLVFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE 310
L +W E + P + LV G R + VV SY +L R +E
Sbjct: 677 LIYNWGHEFSIFAP---SLRVLLVTGPQAERQKELEQIDEYDAVVTSYDLLKRDLPYYME 733
Query: 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINM 370
+ I+DE+ +++ + S KAV V A + R L +GTP +R +++ +
Sbjct: 734 HTFRFEIIDEAQYIKNASTQS----AKAVKVVKA-ISRFAL-TGTPVENRLSELWSIFDY 787
Query: 371 LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
L PG L Y KT ++ V+ + ++ + +R ++RRLK +
Sbjct: 788 LMPGFL--FTYRKFKTMFEIPIVKEEDEEALENLHRMIR----------PFILRRLKSDV 835
Query: 431 LVQLPPKRRQIIRLLL--KRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488
L +LP K +++ K+ E+ A AA+ + E+D +KT + S + R
Sbjct: 836 LKELPVKLEKVVYSAPEGKQKELYRA-AALKLRQSLEED---EKTAETSGKFQILAELTR 891
Query: 489 LGKISYQ-ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547
L ++ L + +G E + ++ AA+ +K+++F+ +L +
Sbjct: 892 LRQLCCDPSLCFERYNG--ESAKLETCVSLLLSAAE-----SGHKILLFSQFASMLGIIG 944
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ ++GI F + G+T +R V++F ++V + +I + AGG GL+ ++A V+
Sbjct: 945 NRLKKEGIPFYLLTGSTTKEERNKMVNAFH-RDQVPVFLISLKAGGTGLNLTAADIVIHY 1003
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD 667
+ + + QA DRAHR GQ V +Y KDT +E+ + + K +
Sbjct: 1004 DPWWNVAAQNQATDRAHRIGQEKQVTVYKLIMKDTIEEN-----------ILNLQEAKKN 1052
Query: 668 ALQEIAVEG-VSYLEMS 683
+I EG VS EMS
Sbjct: 1053 LADQIVTEGMVSLAEMS 1069
>gi|398994052|ref|ZP_10696979.1| DNA/RNA helicase, superfamily II, SNF2 family [Pseudomonas sp. GM21]
gi|398133293|gb|EJM22507.1| DNA/RNA helicase, superfamily II, SNF2 family [Pseudomonas sp. GM21]
Length = 1098
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 221/486 (45%), Gaps = 86/486 (17%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI-- 246
P+ L + P+QLEG+ + L GG ++ D+MGLGKTLQ +A G +
Sbjct: 621 PEGLKATLRPYQLEGLNWMQTLRELEVGG--ILGDDMGLGKTLQTLAHLLTEKQTGRLDL 678
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL 304
L V P L +W +E R+ P +H + + L + +V+ +Y +L R
Sbjct: 679 PALAVMPTSLIPNWLDEAARFTPQLKVLALH-GSARQKDFASLAEYD-LVLTTYALLPRD 736
Query: 305 RKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ + Q W++LI+DE+ +++ SK ++K+ ++ + LSGTP +
Sbjct: 737 LEVLQPQVWSVLILDEAQNIKNPVSKAAQAARDLKS--------RQRLCLSGTPLENHLG 788
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ Q + L PG LG +K F + Y + + R++ L +K +
Sbjct: 789 ELWSQFHFLLPGWLGDSK-TFNRDYRTP----------IEKHANSDRMQHLTARIK-PFL 836
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN------DKTPKD 476
+RR K + +LPPK +EIV ++D ++D DK +D
Sbjct: 837 LRRKKDQVATELPPK-----------TEIVHWVD----LSDGQRDVYETVRVAMDKKVRD 881
Query: 477 SDEHDDSG---------------ACCRLGKISYQELGIAKLSGFREWLSIHPVIAE--SD 519
+ G CC L + + SG + +S+ ++ E S+
Sbjct: 882 EIALNGVGRSQIIILDALLKLRQVCCDLRLVKTTITAKSLRSGSGKLISLMEMLEELLSE 941
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
G K+++F+ +L ++E + ++ +G+ + G+T DR++ V FQ S
Sbjct: 942 G----------RKILLFSQFTSMLALIEEELQQRDLGYSLLTGDT--TDRRTPVKDFQ-S 988
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+V + +I + AGG GL+ ++A V+ + +P++ QA DRA+R GQ V +Y A
Sbjct: 989 GKVPLFLISLKAGGTGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIA 1048
Query: 640 KDTTDE 645
+ T +E
Sbjct: 1049 RGTVEE 1054
>gi|320164135|gb|EFW41034.1| smarca2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 1466
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 113/465 (24%), Positives = 209/465 (44%), Gaps = 60/465 (12%)
Query: 220 LIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q I++ A I G LVV P + +W E ERW P + H
Sbjct: 596 ILADEMGLGKTIQTISLIAYLIEKKQMMGPYLVVVPLSVLSNWQLEFERWAPSIVK---H 652
Query: 276 LVFGHRNNPVHLTRFPR-----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330
+ G L R V++ +Y + R + + W +IVDE H V+
Sbjct: 653 VYKGSPAARRALHPIIRGGKFNVLLTTYDYIVRDKNVLSRVAWKYVIVDEGHRVK----- 707
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+ ++ VL +LLSGTP + +++ +N L P + + V
Sbjct: 708 NHSGKLNTVLTQYFPAPNRLLLSGTPLQNNLPEMWALLNFLLPTI-----------FNSV 756
Query: 391 KTVQGYQGQLFQDFSKGVRL--EELNVLLKQ------TVMIRRLKQHLLVQLPPKRRQII 442
+ + F + ++ V L EE +++++ ++RRLK+ + QLP K ++
Sbjct: 757 DNFEQWFNAPFANTTEKVELSGEESILIIRRLHKILRPFLLRRLKREVESQLPDKVEYVV 816
Query: 443 RLLLKRSE--IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG------ACCRLGKISY 494
+ + + + + S GV+ S +D D + + +G +L KI
Sbjct: 817 KCGMSQLQKTMYSFVKRKGVLLTSAQD--TDPSAAKKLQQKPTGVRVLAHTLMQLRKICN 874
Query: 495 Q-------ELGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRSNKMIIFAHHLK 541
E G+++ GF + ++ + G ++ ++ +++++F+ +
Sbjct: 875 HPFLFETLERGVSRHMGFGGAIITGSLVVRASGKFEMFDRLLTKLHRTGHRVLLFSQMTQ 934
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSS 600
L ++++ + I ++R+DGNT P +R + F N + ++ AGG+GL+ +
Sbjct: 935 CLTILEDYCNYNNILYLRLDGNTKPDERAELLTKFNAPNSPYNLFLLSTRAGGLGLNLQT 994
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A VV + +P LQA+DRAHR GQ + V + F D+ +E
Sbjct: 995 ADTVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVIRFVTADSVEE 1039
>gi|356563853|ref|XP_003550172.1| PREDICTED: putative chromatin-remodeling complex ATPase chain-like
[Glycine max]
Length = 1059
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 212/471 (45%), Gaps = 69/471 (14%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ G +VV P
Sbjct: 187 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLG 246
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ + H+ +F V V S+ M+ + + ++
Sbjct: 247 NWMNEIRRFCPVLRAVKF---LGNPDERKHIREELLVAGKFD-VCVTSFEMVIKEKSALR 302
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + R+ L++GTP + ++++ +N
Sbjct: 303 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLYNTNYRL-LITGTPLQNNLHELWALLN 356
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G + ++ Q K +R ++RRLK
Sbjct: 357 FLLPEI-----FSSAETFDEWFQISGENDEHEVVQQLHKVLR----------PFLLRRLK 401
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 402 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEVVNAGGERK 446
Query: 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESD------------GAADIDVNPRSNKMII 535
RL I+ Q + P D + R ++++I
Sbjct: 447 RLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLI 506
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAGGV 594
F+ ++LD +++++ G + RIDGNT DR +++ +F + +E + ++ AGG+
Sbjct: 507 FSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGL 566
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC + T +E
Sbjct: 567 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 617
>gi|443696075|gb|ELT96855.1| hypothetical protein CAPTEDRAFT_224509 [Capitella teleta]
Length = 2952
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/502 (24%), Positives = 214/502 (42%), Gaps = 90/502 (17%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLS 257
+QLEGV F C++ADEMGLGKT+Q+I G L++ P +
Sbjct: 1020 YQLEGVSWLSFNWYNKQNCILADEMGLGKTIQSITFLHSMYDYGIKGPYLIIAPLSTIGN 1079
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS---------- 307
W+ E E W D++ + H T R ++ Y M H+ +
Sbjct: 1080 WSREFEVW------TDMNAIV------YHGTTASRNMIQEYEMYHKDSEGKRIPDCYKFN 1127
Query: 308 ---------------MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352
+ E +W +++DE+H R R + E D+ + VLL
Sbjct: 1128 ALITTYEVIISDVEELSEIEWRAVVIDEAH--RLKNRNCKLLEGLRCFDLEFR----VLL 1181
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++F +N L P ++ ++ + Q F + ++++
Sbjct: 1182 TGTPLQNNTDELFSLLNFLEP-----KQFSSSEAWS----------QEFGSLTSDTQVDK 1226
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDA 468
L LLK +M+RRLKQ + L K II + L + K ++ + K
Sbjct: 1227 LKALLK-PMMLRRLKQDVEKNLAAKEETIIEVELTN---IQKKYYRAILERNFSFLSKGG 1282
Query: 469 TNDKTPKDSDEHDDSGACCR----LGKISYQELGIAKLSGF-----REWLSIHPVIAESD 519
T+ P + + CC + Q L A+L G R++L++ + S
Sbjct: 1283 TSSNIPNLMNTMMELRKCCNHPYLVTGAEEQILEEARLGGHELTHERQFLAM---VQSSG 1339
Query: 520 GAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
+D + ++K++IF+ +VLD ++++I +K + RIDG+ RQ A+
Sbjct: 1340 KLVLVDKLLPKLKAGNHKVLIFSQMTRVLDIIEDYIIQKKYLYERIDGHIRGDLRQEAID 1399
Query: 575 SFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F ++ + + T AGG+G++ ++A V+ + +P LQA+ R HR GQ AV
Sbjct: 1400 RFSKTDSDRFVFLLCTRAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQVKAVK 1459
Query: 634 IYIFCAKDTTDESHWQNLNKSL 655
+Y ++T + + +K L
Sbjct: 1460 VYRLITRNTYEREMFDKASKKL 1481
>gi|412985746|emb|CCO16946.1| SNF2 family helicase/ATPase PasG [Bathycoccus prasinos]
Length = 795
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 125/514 (24%), Positives = 234/514 (45%), Gaps = 46/514 (8%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAI 253
V+ +QL GV++ + G ++AD+MGLGKT+Q I + S G LVV P
Sbjct: 228 VLRGYQLRGVKWLISLWSNGLNGILADQMGLGKTIQTIGFLSHLRSKGICGPFLVVGPLS 287
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR---------VVVISYTMLHRL 304
+W E +++ P P ++ + TR P V+V S+ +
Sbjct: 288 TLSNWINEFKKFCP-AFPTVLYHGSKQERANIRNTRMPVRSVVDETFPVIVTSFEIAMFD 346
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
RK + + + LIVDE H ++ + + ++ + + A K +LL+GTP + ++
Sbjct: 347 RKFLQKYQFKYLIVDEGHRLK----NFDCKLIRELKIIPAANK--LLLTGTPLQNNLPEL 400
Query: 365 FHQINMLWPGLLG-----KAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ ++ L P + K+ +DF++ D V+ + Q + + SK L+ +LK
Sbjct: 401 WSLLHFLLPDVFSSLDQFKSWFDFSEELDDKVEFAEREQQRRAKVISK------LHGILK 454
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG-VINDS-EKDATNDKTPKD 476
++RRLK + + LP K+ I+ + ++ A V I D +K+A ++ P
Sbjct: 455 -PFLLRRLKGDVEISLPRKKEIIVYASMTETQKKFNDAMVDKTIEDMLKKEAGGNRVPVG 513
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPRSN 531
S ++ R ++ +L L G + S ++A+ +D + +
Sbjct: 514 STALNNMLMQLR-KNCNHPDLISGGLDGSIMFPSAEELVAQCGKMQLLDRLLTSLRKSGH 572
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K +IF+ ++LD ++ F ++G RIDG+ R+ A+ +F V I ++ A
Sbjct: 573 KTLIFSQMTRMLDLLESFFEQRGERVCRIDGSVKQEQRRDAIDAFNKDPTVDIFLLSTRA 632
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
GG+G++ ++A V+ + +P +QA DR HR GQT V++Y ++ +
Sbjct: 633 GGLGINLTAADTVIIYDSDWNPHADMQAMDRVHRIGQTKPVHVYRLATANSVEGKMLSRA 692
Query: 652 NKSL---RCVSSATNGKYDALQEIAVEGVSYLEM 682
L + V S N K ++ + E +S E+
Sbjct: 693 ASKLKLEKLVISGANLKQGTTKQKSTESMSTEEL 726
>gi|330819988|ref|YP_004348850.1| SNF2-related protein [Burkholderia gladioli BSR3]
gi|327371983|gb|AEA63338.1| SNF2-related protein [Burkholderia gladioli BSR3]
Length = 1119
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/490 (26%), Positives = 227/490 (46%), Gaps = 74/490 (15%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAA 238
S + VDE +P+ L + +Q +G+ +F + ++AD+MGLGKT+QA+A
Sbjct: 619 SGQGVDE--APVPRGLRAELRAYQRQGLNWMQFLREQNLSGVLADDMGLGKTVQALAHIL 676
Query: 239 CFISAGSI----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF---P 291
AG + LVV P L +W EE R+ P D+H P RF P
Sbjct: 677 AEKEAGRLDRPALVVAPTTLMHNWREEARRFAPDLRVLDLH-------GPQRRERFDEIP 729
Query: 292 R--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349
R +V+ +Y +L R + ++ E D+ LLI+DE+ +V+ + + + ++ A+ +
Sbjct: 730 RHDLVLSTYALLWRDQAALAEHDYHLLILDEAQYVKNAATKA----AATIRELRARHR-- 783
Query: 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409
+ L+GTP + +++ Q + L PG LG + DF++ + G VR
Sbjct: 784 LCLTGTPLENHLGELWAQFDFLLPGFLGTQR-DFSRRWRTPIEKHG----------DTVR 832
Query: 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
E L ++ M+RR K + +LPPK +L+ E+ A+ + ++ + A
Sbjct: 833 RELLARRIR-PFMLRRRKDEVATELPPK-----TTILRSVELDGAQRD---LYETVRAAV 883
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
++K K A G + + L R+ + P + + + AA ++ + +
Sbjct: 884 HEKMRK---------AVAEKGLARSHIVVLEALLKLRQ-VCCDPRLVKLERAARVEESAK 933
Query: 530 --------------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575
++++F+ +L+ + E + GI V + G+T DR + V
Sbjct: 934 LALLMEMLPELIEEGRRVLLFSQFTGMLELIAEALDAAGIAHVMLTGDTT--DRVTPVQR 991
Query: 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
FQ EV + +I + AGGVGL+ ++A V+ + +PS+ QA DRAHR GQ V +Y
Sbjct: 992 FQ-QGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWNPSVENQATDRAHRLGQDKPVFVY 1050
Query: 636 IFCAKDTTDE 645
+ +E
Sbjct: 1051 KLIVAGSVEE 1060
>gi|123503388|ref|XP_001328501.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
gi|121911445|gb|EAY16278.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
Length = 1247
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/542 (23%), Positives = 241/542 (44%), Gaps = 72/542 (13%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA--------GSILVVCPA 252
+QL+G+ F + ++ADEMGLGKTLQ + F++ G L++ P
Sbjct: 171 YQLDGLNFLMNCWCNHRNAILADEMGLGKTLQV----SVFLNTLNKLKKIRGPFLIIVPL 226
Query: 253 ILRLSWAEELERWLP-----FCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLR 305
W +ELE W FC + TR P +V++ +Y + R
Sbjct: 227 STIGHWEQELEEWTDLHCTLFCFNKYRREICKTYEFYFENTRIPIFQVLLTTYDYITREN 286
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ +W +++ DE+H ++ S + ++ + ++ +K K +LL+GTP + +++
Sbjct: 287 ELFSGVNWEVIVCDEAHKMK----NSNSKLMQNMKNLKSKFK--LLLTGTPIQNSTPELW 340
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+N + P ++++ +Q + F ++ ++ +LN +LK +M+RR
Sbjct: 341 SLLNYINPE--------------KFESLEEFQEK-FGTVNESSQISQLNSILK-PIMLRR 384
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSE-----IVSAKAAVGVINDSEKDATNDKTPK--DSD 478
+K + L P II + + V + V ++ +EK KTP +
Sbjct: 385 VKSDVEKSLTPIEEIIIECKMTDVQKYYYRSVFTRNTVFLLRGTEK-----KTPNFLMNI 439
Query: 479 EHDDSGACCRLGKISYQELGIAK-LSGFREWLSIHPVIAESDG------AADIDVNPRSN 531
+ C I E I + L+ E +I + S G + P +
Sbjct: 440 TMELRKVCNHPYLIQGAEENIMRDLNKTGEIKTIQDGLIRSCGKMILLDKLLDRLLPEGH 499
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGIT 590
+++IF+ +LD +Q++++ KGI +VR+DGN +RQ+A+ +F +++ I ++
Sbjct: 500 RVLIFSQFTLILDIIQDYLNLKGIKYVRLDGNVRGPERQAAIDNFSRDGSDIPIFLLTTR 559
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGG G++ ++A V+ + +P +QA R HR GQT +V +Y F ++ + S +
Sbjct: 560 AGGQGINLTAADTVIIYDSDWNPQNDIQATARCHRIGQTKSVKVYRFLTSNSYERSMFDI 619
Query: 651 LNKSLRCVSSATNG-------KYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQ 703
++ L + G D L + Y SD SED+ D +A S +
Sbjct: 620 ASRKLGLDHAVLEGSSKERSENLDKLLRLGAYYQFYSNDSDDNKFASEDID-DIIAHSQR 678
Query: 704 FQ 705
+
Sbjct: 679 IR 680
>gi|73997935|ref|XP_534944.2| PREDICTED: DNA excision repair protein ERCC-6 [Canis lupus
familiaris]
Length = 1486
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 116/521 (22%), Positives = 212/521 (40%), Gaps = 98/521 (18%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD D+ K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 486 SDAEFDDF--KMPGFLFRKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 541
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
A F G ++VCP + W +E W P A +H +
Sbjct: 542 LAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQ 601
Query: 283 NPVHLTR----FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
L R +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 602 KKEKLIRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR---------NPNA 652
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 653 AVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGG 711
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--RLLLKR 448
Y + +L+ T+ ++RR+K + + LP K Q++ RL ++
Sbjct: 712 YSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQ 768
Query: 449 SEI----VSAKAAVGVINDSEK--------------------DATNDKTPKDSDEHDDSG 484
++ + +K ++N + N KT D DE D G
Sbjct: 769 HKVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHPDLFSGGPKNLKTIPDDDEEDQFG 828
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
R GK+ I S + W + + ++++F+ ++LD
Sbjct: 829 YWKRSGKM------IVVESLLKIW------------------HKQGQRVLLFSQSRQMLD 864
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
++ F+ + ++++DG T RQ + + + + ++ GG+G++ + A V
Sbjct: 865 ILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLTGANRV 924
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + +PS QA +RA R GQ V +Y T +E
Sbjct: 925 IIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 965
>gi|229489423|ref|ZP_04383286.1| Non-specific serine/threonine protein kinase [Rhodococcus
erythropolis SK121]
gi|229323520|gb|EEN89278.1| Non-specific serine/threonine protein kinase [Rhodococcus
erythropolis SK121]
Length = 609
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 224/504 (44%), Gaps = 75/504 (14%)
Query: 190 IGKLPKSLLDVIL-PFQLEGVRF--GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI 246
+G L ++ + L P+Q++GV + L G ++ADEMGLGKTLQAI++ A G
Sbjct: 134 VGSLRRAKIQATLRPYQMQGVAWLTALSGSGGGILADEMGLGKTLQAISMIAIRADDGPH 193
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRL 304
LVVCP + +W E+ER+ P LP +H H TR P V+ SY++L
Sbjct: 194 LVVCPTSVIGNWRREIERFAPH-LPLHVH----HGAARALPTRIPDGTTVLTSYSVLRSD 248
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
+ W ++ DE+ ++ + KA + ++A VK V ++GTP +R ++
Sbjct: 249 AAQLAPVHWCSVVFDEAQQIKNPASLA----AKAAMQLSADVK--VAMTGTPVENRLEEL 302
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
+ + P +LG + F + + V G + + RL + ++R
Sbjct: 303 WSLFRVANPDVLGT-RARFRQRFA-VPIESG------RSATAATRLAA----VIDPFILR 350
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
R K + LPPK+ + L + ++AV DS
Sbjct: 351 RTKDTVAKDLPPKQFSTVSCTLTSEQARIYRSAVADAFDSGLGT---------------- 394
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM----------- 533
R G I +A L+ ++ + HP A+ G D D+ RS K+
Sbjct: 395 GIARRGNI------LALLTTLKQ-VCNHP--AQVTGDTD-DLYGRSGKLDRATEMISEIV 444
Query: 534 ------IIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSA-VHSFQL-SNEVKI 584
+IF + + + + + +E GIG V L D++ A V +FQ ++ +
Sbjct: 445 DDGDRALIFTQYRTMGEMLSRHLGAELGIGAVPFLHGGLNTDKRDAMVDAFQNDTDSPPV 504
Query: 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
I+ + A G GL+ + A +VV + +P++ QA DRAHR GQ VN++ T
Sbjct: 505 LILSLRAAGFGLNLTRASHVVHYDRWWNPAVEDQATDRAHRIGQKRTVNVHTLVTGGTV- 563
Query: 645 ESHWQNLNKSLRCVSSATNGKYDA 668
E H +++S R V+ A +G +A
Sbjct: 564 EDHIAAMHESKRAVADAVSGNVEA 587
>gi|254238775|ref|ZP_04932098.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
gi|126170706|gb|EAZ56217.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
Length = 676
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 260 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 317
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L + +A++++D
Sbjct: 318 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 364
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 365 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 417
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 418 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 460
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 461 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 494
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G+G
Sbjct: 495 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGLGC 543
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 544 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 603
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 604 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 638
>gi|115371958|ref|ZP_01459270.1| helicase [Stigmatella aurantiaca DW4/3-1]
gi|115370923|gb|EAU69846.1| helicase [Stigmatella aurantiaca DW4/3-1]
Length = 857
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 219/480 (45%), Gaps = 71/480 (14%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISA 243
EM +P +L + +Q EG + R GG CL AD+MGLGKTLQ + +
Sbjct: 388 EMEVSVPPALKAELRDYQREGFTWMARLAEWGGGGCL-ADDMGLGKTLQTLTLLLHRAKD 446
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303
G LVV P + +W E ER+ P R PV + V+++SY +L R
Sbjct: 447 GPALVVAPTSVCFNWIREAERFAPSLRVKSYRDADRERVLPV--LKAGDVLLVSYGLLVR 504
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ +A L+VDE+ + + + KA+ D+ A+ K V LSGTP +R +
Sbjct: 505 DAERFASVPFATLVVDEAQ----AAKNPDSARAKALADIQAEAK--VALSGTPVENRLSE 558
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ ++++PGLLG + F K + +G + + S+ +R ++
Sbjct: 559 LWSLFHIVFPGLLG-GREAFRKRFAVPIEREGNK-EARASLSRVIR----------PFLL 606
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAA-VGVINDSEKDATNDKT--------- 473
RR K + +LPP+ ++ ++L E +AA + I E DK
Sbjct: 607 RRTKAEVARELPPRIETVVPVVLSEGERKLYEAARIASILQLESRTEKDKRFVMLAALTR 666
Query: 474 -------PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV 526
PK DE D +L ++ + ++ R ++G
Sbjct: 667 LRLLACHPKLWDE-DSPLPSSKLERM------VERVEELR-----------AEG------ 702
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586
++ +IF+ +++L+ E + +GI F +DG T +RQ+ V +FQ E + +
Sbjct: 703 ----SRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQARVEAFQ-RGEGDVFL 757
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
I + AGG GL+ ++A +V+ L+ +P++ QA DRAHR GQT V + ++ T +E+
Sbjct: 758 ISLKAGGTGLNLTAADHVIHLDPWWNPAVEDQATDRAHRIGQTRPVTVSRLVSEGTIEEA 817
>gi|30686915|ref|NP_568365.2| chromatin remodeling factor17 [Arabidopsis thaliana]
gi|332005204|gb|AED92587.1| chromatin remodeling factor17 [Arabidopsis thaliana]
Length = 1069
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 137/625 (21%), Positives = 269/625 (43%), Gaps = 95/625 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 197 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 256
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 257 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREELLVAGKFD-ICVTSFEMAIKEKTTLR 312
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 313 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 366
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 367 FLLPEV-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 411
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 412 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEVVNGGGERK 456
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 457 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLVTNAGKMVLLDKLLPKLKDRDSRV 514
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC ++ + +
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 635 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 694
Query: 694 TLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMN-DKLLEESKTDHSPTETDDH 752
T + A +F E + +++DF + +++ +K++ K++ E+ D E +
Sbjct: 695 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDESKVDFKKIVSENWNDPPKRERKRN 754
Query: 753 HNNVSQYTGRIHLYSCVPGTDSRPR 777
++ V + + L P PR
Sbjct: 755 YSEVEYF--KQTLRQGAPAKPKEPR 777
>gi|84619206|emb|CAJ42330.1| SNF2 related domain [Streptomyces steffisburgensis]
Length = 618
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 226/493 (45%), Gaps = 65/493 (13%)
Query: 203 PFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258
P+Q+ GV + LR RGG ++ADEMGLGKTLQAI + A G LVVCP L +W
Sbjct: 157 PYQMHGVAW-LRSVPGRGGGAVLADEMGLGKTLQAICLLATRSEGGPHLVVCPTSLVGNW 215
Query: 259 AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIV 318
EL R+ P H G R + VVV SY +L R +++ + W + +
Sbjct: 216 VRELARFSPATPVVAYH---GPRRSLPDTFEAGTVVVTSYPVL-RTDEALEKTQWDVAVF 271
Query: 319 DESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
DE+ ++ P+ + KA ++A+V+ + ++GTP +R +++ +N+ PGLL
Sbjct: 272 DEAQQIK------NPDALVSKAAARLSAEVR--IAMTGTPVENRLEELWSILNVTSPGLL 323
Query: 377 G-KAKY--DFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433
G +A++ FA ++V L+ L+ M+RR K ++ +
Sbjct: 324 GSRARFRQRFAAPIEQRRSVSAASA--------------LHALVSPH-MLRRTKAEVVAE 368
Query: 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI- 492
LP K+ + L ++ + AV D G R G++
Sbjct: 369 LPAKQYSTVVCTLTGEQVRLYREAVDRAFDEGL----------------GGGIERRGRVL 412
Query: 493 ----SYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVNPRSNKMIIFAHHLKVLDGV 546
S +++ RE + + D AA++ ++ ++ ++F + + D +
Sbjct: 413 ALLTSLKQICNHPAQYLREEAAGTGRSGKFDRAAEMLAEIVDDGDRALVFTQYRVMGDLL 472
Query: 547 QEFISEK-GIGFVR-IDGNTLPRDRQSAVHSFQLSNEV-KIAIIGITAGGVGLDFSSAQN 603
+S+ G G + + G P R VH FQ S++ + ++ + A G GL+ + A +
Sbjct: 473 AGHLSQHLGTGPIPFLHGGLSPDKRDRLVHDFQESDDAPPVLLLSLRAAGFGLNLTRANH 532
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
V+ + +P++ QA DRAHR GQ +N++ T E H ++++ R + +
Sbjct: 533 VMHYDRWWNPAVEEQATDRAHRIGQQRTLNVHALVTGGTI-EDHIAQMHETKRGFADVVS 591
Query: 664 GKYD-ALQEIAVE 675
G + AL E++ E
Sbjct: 592 GNTEAALAELSDE 604
>gi|152984418|ref|YP_001349818.1| SNF2 family helicase [Pseudomonas aeruginosa PA7]
gi|150959576|gb|ABR81601.1| helicase, SNF2 family [Pseudomonas aeruginosa PA7]
Length = 658
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGKPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPLVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEGTIDEQLWQLLN 629
>gi|30686918|ref|NP_850847.1| chromatin remodeling factor17 [Arabidopsis thaliana]
gi|332005205|gb|AED92588.1| chromatin remodeling factor17 [Arabidopsis thaliana]
Length = 1072
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 137/625 (21%), Positives = 269/625 (43%), Gaps = 95/625 (15%)
Query: 204 FQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRL 256
+QL G+ + +R G ++ADEMGLGKTLQ I++ A I +VV P
Sbjct: 197 YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLG 256
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLT-------RFPRVVVISYTMLHRLRKSMI 309
+W E+ R+ P G+ H+ +F + V S+ M + + ++
Sbjct: 257 NWMNEIRRFCPVLRAVKF---LGNPEERRHIREELLVAGKFD-ICVTSFEMAIKEKTTLR 312
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
W +I+DE+H ++ +E + + + + R+ L++GTP + ++++ +N
Sbjct: 313 RFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYRL-LITGTPLQNNLHELWALLN 366
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGY--QGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
L P + + A+T+ + + G Q ++ Q K +R ++RRLK
Sbjct: 367 FLLPEV-----FSSAETFDEWFQISGENDQQEVVQQLHKVLR----------PFLLRRLK 411
Query: 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487
+ LPPK+ I+++ + + + KA + KD + + G
Sbjct: 412 SDVEKGLPPKKETILKVGMSQMQKQYYKALL---------------QKDLEVVNGGGERK 456
Query: 488 RLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
RL I+ Q E G +G + L + + R +++
Sbjct: 457 RLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG--DHLVTNAGKMVLLDKLLPKLKDRDSRV 514
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVKIAIIGITAG 592
+IF+ ++LD +++++ +G + RIDGNT +R +++ ++ + +E + ++ AG
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
G+G++ ++A V+ + +P + LQA+DRAHR GQ V ++ FC ++ + +
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 653 KSL----------RCVSSATNGKYDALQEIAVEGVSYLEMSDKT------DR---GSEDL 693
K L R T K + LQ + D T DR E+
Sbjct: 635 KKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 694
Query: 694 TLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMN-DKLLEESKTDHSPTETDDH 752
T + A +F E + +++DF + +++ +K++ K++ E+ D E +
Sbjct: 695 TAELDAKMKKFTEDAIQFKMDDSADFYDFDDDNKDESKVDFKKIVSENWNDPPKRERKRN 754
Query: 753 HNNVSQYTGRIHLYSCVPGTDSRPR 777
++ V + + L P PR
Sbjct: 755 YSEVEYF--KQTLRQGAPAKPKEPR 777
>gi|452824666|gb|EME31667.1| chromatin remodeling complex / DNA-dep ATPase [Galdieria sulphuraria]
Length = 1777
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 133/553 (24%), Positives = 233/553 (42%), Gaps = 89/553 (16%)
Query: 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI-----------LVVCPAIL 254
LE + F R G L+ D+MGLGKTL + C I ++ LV+ P+ +
Sbjct: 1189 LEWLAFLKRYGLHGLLCDDMGLGKTLMTL----CIIVGDTVEWKNYGFQKHSLVIAPSSV 1244
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHRLR-KSMIEQ 311
W +E +R+ L I + L F +++ SY + R +S
Sbjct: 1245 TAHWFQEAKRFFGSSLSNVILYADSAKKRKKRLASFESSPLIITSYEIKIRSDIESFQSY 1304
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
W L++DE H +R + + +K++L + ++LSGTP + D++ + L
Sbjct: 1305 AWNYLVLDEGHVIR-NHHSKTALAIKSLL-----AEHRLILSGTPVQNSVKDLWSLFDFL 1358
Query: 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT------VMIRR 425
PG LG + F + + V+ + +G+L K E+ +VLL+ ++RR
Sbjct: 1359 TPGFLGD-EASFQERF--VRPI--LRGKLLSSEQKDR--EQADVLLETLHRQVLPFILRR 1411
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDA-TNDKTP---------- 474
+K +L +LPPK Q + + + A G + + K+ +DK+P
Sbjct: 1412 MKSDVLAELPPKIIQNLSFEMNSLQAKLYNAVSGFLATTAKEQLVHDKSPSLHIFSALRC 1471
Query: 475 ---------------KDSDEH------DDSGACCRLGKIS--------YQELGIAKLSGF 505
KD E+ D +C S + +LG+
Sbjct: 1472 LQQICTHPVLLLDSGKDWIENVSGKLAIDVNSCYHWKSSSKFQCLYDLFADLGLI----L 1527
Query: 506 REWLSIHPVIAESDGAADIDVNPR--SNKMIIFAHHLKVLDGVQEFISEKG----IGFVR 559
E + E D D+N + +++++FA + + LD V++F+ +G + ++R
Sbjct: 1528 HEEEVAQKELKEEPEETDWDMNEQDTGHRVLLFAQNRRTLDIVEKFLFMEGPFRHLSYLR 1587
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
++G P RQ+ V F + ++ GG+GL+ + A VVF+E +P +QA
Sbjct: 1588 LEGTVSPMHRQAIVTRFNSDPSISCMLLTTQIGGLGLNLTGADTVVFIEQDWNPVKDMQA 1647
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSY 679
DRAHR GQT VN++ K T +E + S N +LQ++ +
Sbjct: 1648 MDRAHRIGQTRTVNVFKLVTKGTLEEKIMKLQEMKTAVAESIVNRDNSSLQDLDTSQL-- 1705
Query: 680 LEMSDKTDRGSED 692
LE+ G +D
Sbjct: 1706 LELFQFDSSGQQD 1718
>gi|326678432|ref|XP_002666261.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
[Danio rerio]
Length = 607
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHHL +L E + E G++RIDG+ +R VH FQ + ++A++ I A
Sbjct: 37 KFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQLVHRFQNDPDTRVAVLSIQA 96
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
G GL F++A +VVF EL +P + QAEDRAHR GQT+ V+I+ AK T D W L
Sbjct: 97 AGQGLTFTAASHVVFAELYWNPGHIKQAEDRAHRIGQTATVHIHYLIAKGTFDTVMWAML 156
Query: 652 NKSLRCVSSATNGKYDALQEIAVEG 676
N+ SA NGK + L+ A EG
Sbjct: 157 NRKETVTGSALNGKKEYLK--AEEG 179
>gi|390948557|ref|YP_006412316.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390425126|gb|AFL72191.1| DNA/RNA helicase, superfamily II, SNF2 family [Thiocystis violascens
DSM 198]
Length = 1379
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 219/477 (45%), Gaps = 61/477 (12%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFI 241
V E+ +P +L + +Q+EG R+ R G CL AD+MGLGKT+QA+A+
Sbjct: 908 VRELEPVIPSTLQAELRDYQVEGYRWLARLAHWGAGACL-ADDMGLGKTVQALAMILARA 966
Query: 242 SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-TRFPRVVVIS-YT 299
G LV+ P + +W E R+ P P FG + L + P ++IS Y
Sbjct: 967 PEGPTLVLAPMSVCSNWVSEARRFAPTLQPKR----FGEGDRERMLESAGPFDLIISTYG 1022
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP--- 356
+L + + +W+ ++ DE+ + + ++ + +A++ + A + I +GTP
Sbjct: 1023 LLQTEGERLAGVNWSTIVADEAQ----AFKNAQTKRSQAIMKLNAGFRMIT--TGTPIEN 1076
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
L +++F IN PGLLG Q + + Q G R + L L
Sbjct: 1077 HLGELWNLFRFIN---PGLLGSLD----------SFNQRFAAPIEQRQDSGAR-QRLRQL 1122
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476
LK ++ RRLK +L +LPP R I L L+ S +A E+ D P
Sbjct: 1123 LKPFIL-RRLKTDVLSELPP--RTEITLELEFSAAEAALYEALRRQAIERLKLGDANPGQ 1179
Query: 477 ------SDEHDDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNP 528
++ ACC K++ + I AKL F E + ++
Sbjct: 1180 KRMQLLAEIMRLRRACCH-PKLALPDSDIPSAKLDAFGEIVD--------------ELLE 1224
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+K ++F+ + L ++ + +G+ + +DG+T R++AV +FQ + E + +I
Sbjct: 1225 NRHKALVFSQFVDHLHLIRAHLDARGVRYQYLDGSTPEAKRKTAVAAFQ-AGEGDLFLIS 1283
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY K T +E
Sbjct: 1284 LRAGGSGLNLTAADYVIHMDPWWNPAVEDQASDRAHRIGQERPVTIYRLITKGTIEE 1340
>gi|405981099|ref|ZP_11039428.1| hypothetical protein HMPREF9240_00434 [Actinomyces neuii BVS029A5]
gi|404393118|gb|EJZ88175.1| hypothetical protein HMPREF9240_00434 [Actinomyces neuii BVS029A5]
Length = 1006
Score = 117 bits (294), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 191/427 (44%), Gaps = 32/427 (7%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG 279
++AD+MGLGKT+Q ++ + G++LVV P + +W E ER+LP A +
Sbjct: 574 ILADDMGLGKTVQLLSAIKLSRTEGTVLVVAPTSVVATWVHEAERFLPDLNVASVQTTAR 633
Query: 280 HRNNPVH-LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
RN + + + ++V +YT++ + + WA LI+DE+ V+ S + KA
Sbjct: 634 RRNESLSDMAQRADILVTTYTLVRLEAERYAKLGWAGLILDEAQAVKNSDTAT----FKA 689
Query: 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQG 398
+ ++ V ++GTP + D+ ++ PGLL A+ +K V+ G
Sbjct: 690 LQNL--NVGWCFAVTGTPIENSLSDLHSLTSLALPGLLPSARQFRSKVVLPVEK----DG 743
Query: 399 QLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAV 458
+ + R+E +RR K+ + LPPK Q++ + E+V +
Sbjct: 744 EELPLQAVRARVEPH--------FLRRTKEEVATDLPPKSEQVLEV-----ELVDQHRHL 790
Query: 459 GVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAES 518
+K T +++ D S L ++ L S +E ++ E+
Sbjct: 791 -----YDKLLTRERSKALGLIDDPSARVSLLSSLTKIRLMAIDASLVQEQANVPSAKTEA 845
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
+ P +K ++F+ K L V+ I G+ +DG T R R A S
Sbjct: 846 LIQQLSQIIPSGHKALVFSQFTKYLKRVRAQIEAAGMKTSYLDGATTNRPRAIAQFS--- 902
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ ++ I + AGG GL + A V ++ +P++ QA DRAHR GQT VN+Y
Sbjct: 903 EGDAQVFCISLRAGGTGLTLTEADYVYIMDPWWNPAVEEQAIDRAHRLGQTKPVNVYRLV 962
Query: 639 AKDTTDE 645
A DT ++
Sbjct: 963 ATDTVEQ 969
>gi|148807359|gb|ABR13433.1| putative DNA helicase [Pseudomonas aeruginosa]
Length = 657
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G+G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGLGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEGTIDEQLWQLLN 629
>gi|452876451|ref|ZP_21953806.1| SNF2 family helicase [Pseudomonas aeruginosa VRFPA01]
gi|452186716|gb|EME13734.1| SNF2 family helicase [Pseudomonas aeruginosa VRFPA01]
Length = 657
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGKPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPLVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEGTIDEQLWQLLN 629
>gi|269119290|ref|YP_003307467.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
gi|268613168|gb|ACZ07536.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
Length = 1125
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/478 (24%), Positives = 213/478 (44%), Gaps = 60/478 (12%)
Query: 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
GG ++AD+MGLGKTLQ IA+ + L++ P L +W EE +++ P +
Sbjct: 686 GG--ILADDMGLGKTLQVIALLTKLELSSPALIIVPKTLLYNWEEEFKKFSPNLKLLIVE 743
Query: 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335
R + T +++ SY++ + ++ +DE+ H++
Sbjct: 744 GSISTRKKLLKKTENYDIIITSYSLFRSDIDIYEKYTFSFCFLDEAQHIK----NPGINL 799
Query: 336 VKAVLDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
KA+ V AK + L+GTP +LS + IF + + PG LG Y F+K +
Sbjct: 800 TKAIKSVNAKHR--FALTGTPIENNLSELWSIF---DFIMPGYLGSHGY-FSKNFMTPIM 853
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK--RRQIIRLLLKRSE 450
Q + L E L+ +K ++ RR+K+ +L++LPPK Q+ L +
Sbjct: 854 KQNDKSAL----------EALSFHIKPFIL-RRIKKDVLLELPPKIETTQLCELDTDQKR 902
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
+ ++ V ++K+ N+ + K+S ++ I L +
Sbjct: 903 LYQSQLEV-----AKKEIENE---------------IKNEKLSRSQIKIFSLLTRLRQIC 942
Query: 511 IHPVI-----AESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
HP + A S G + D+ ++K ++F+ +L + + +KGI
Sbjct: 943 CHPKLFIDNYAHSSGKFETLFELFDDLISGNHKTLVFSQFTTMLKLISGELKKKGIEHFY 1002
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
+DG+ RDR V+SF N I +I + AGG GL+ + + V+ ++ +PS+ QA
Sbjct: 1003 LDGSMKARDRLELVNSFNAGN-TPIFLISLKAGGTGLNLTGSDTVIHVDPWWNPSVENQA 1061
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGV 677
DR+HR GQ ++V + K T +E + NK + + + + + ++ E +
Sbjct: 1062 SDRSHRIGQKNSVQVIKLITKGTIEEKIMKLQNKKKKLIDNVLTSEGSLINTLSEEDI 1119
>gi|302795003|ref|XP_002979265.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
gi|300153033|gb|EFJ19673.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
Length = 684
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 113/457 (24%), Positives = 207/457 (45%), Gaps = 36/457 (7%)
Query: 200 VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAI 253
V+ +QL GV++ + + G ++AD+MGLGKT+Q I A + G LV P
Sbjct: 128 VLKSYQLRGVQWMMALYQNGYSGILADQMGLGKTVQTITFIAHLMENGVKGPFLVCAPLS 187
Query: 254 LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR--FPR------VVVISYTMLHRLR 305
+W E+ RW P H G + R PR V+V SY +L
Sbjct: 188 TLANWTREISRWCPSMKSLLYH---GTKEERAEKRRKHMPRNGESLPVIVTSYEVLMVDI 244
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ W ++VDE H ++ + +E+K + K++ +LL+GTP ++ +++
Sbjct: 245 SHFKQFKWTYVVVDEGHRLK-NHDCKLFKELKKM-----KIENSLLLTGTPLQNKLPELW 298
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+N + P + DF + + + + + +L+ +L+ ++RR
Sbjct: 299 SLLNFILPDIFSSLS-DFQTWFAFAERENNSDEERDETRIEASPAIKLHDILR-PFLLRR 356
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+K + LP K I L + S++ + E+ TP S + +
Sbjct: 357 MKSEVEKTLPKKTE--ILLYAQMSKMQKDFDCKLIRRTLEEYLHQAATPGTSRKKRLNNV 414
Query: 486 CCRLGK-ISYQELGIAKLSGFREWLSIHPVIAESDGAADI------DVNPRSNKMIIFAH 538
C +L K ++ +L + + +W + + AE + + R ++++IF+
Sbjct: 415 CMQLRKNCNHPDLLRQEFNQDYDWPPVEQLTAECGKLKFLLDRLLPPLKSRGHRVLIFSQ 474
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
K+LD ++ + E+G+ R+DGN DRQ V +F S E + ++ AGG+G++
Sbjct: 475 MTKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITF--SREGFVFLLSTRAGGLGINL 532
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+SA + + +P + LQA DR HR GQT V++Y
Sbjct: 533 TSADTAIIYDSDWNPQMDLQAMDRCHRIGQTRPVHVY 569
>gi|422609166|ref|ZP_16681120.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
gi|330894793|gb|EGH27454.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
Length = 650
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 128/486 (26%), Positives = 222/486 (45%), Gaps = 81/486 (16%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLG 228
D+G + P + E+ + I K +S ++ Q G+R L+R L+AD+MGLG
Sbjct: 216 DSGIYLASVPSIKNTELTNAEIDKALESF--SLMDHQPAGIRHLLQRTS-ALLADDMGLG 272
Query: 229 KTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL-VFGHRNNPVHL 287
KT QA+ A +LV+ L ++W E+ P A I L F +
Sbjct: 273 KTRQAVIAAGIRAQGKPVLVIVLNSLIINWQREILMVFP---EAQIALQTFDAQAG---- 325
Query: 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE--VKAVLDVAAK 345
++++Y L + +A++++DE+H R EP + D+AA+
Sbjct: 326 -----WIIVNYERLGDFVRH--AGCFAVMVIDEAH------RLKEPTAAWTRHGFDIAAQ 372
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFS 405
V+ LL+GTP L+R ++ H + L +G+ + +C + + G +F
Sbjct: 373 VQNRYLLTGTPVLNREAEL-HTLLRLSGHPIGQLPLN---EFC-----ERFAGS--PEFR 421
Query: 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE 465
K +R E + +L++ ++ +L L K+RQ + ++L + E
Sbjct: 422 KTLRDEISDWMLRR-------RKDVLPNLKGKQRQTVPVILSQVE--------------- 459
Query: 466 KDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID 525
+D N SD+H A+L R+ L V +D A++D
Sbjct: 460 RDEYNQIM--RSDQHR-----------------FARLGAMRQLLERVKVRILADLMAELD 500
Query: 526 VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
V+ +K+I+F + + + ++E + +G V + G+ P+ RQ A+ +FQ + ++
Sbjct: 501 VD---DKVILFCEYQESVATLREHCLKMDVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVF 557
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
I +A G G + ++A V FL LP +P L QAEDRA+R GQ V + I A+DT D+
Sbjct: 558 IGTRSAAGTGYNLTAANYVFFLGLPWTPGLQDQAEDRAYRNGQLRMVVVKIPLAEDTIDQ 617
Query: 646 SHWQNL 651
WQ L
Sbjct: 618 QLWQML 623
>gi|358057608|dbj|GAA96606.1| hypothetical protein E5Q_03276 [Mixia osmundae IAM 14324]
Length = 1763
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 133/500 (26%), Positives = 222/500 (44%), Gaps = 80/500 (16%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAAC-----------FISAGSI--- 246
+Q EGV F + ++ D+MGLGKTLQ+I I A S ++
Sbjct: 1214 YQREGVSWLAFLHKYQLHGILCDDMGLGKTLQSICILASKHFERAEKHTKSASPETVHLP 1273
Query: 247 -LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF------PRVVVISYT 299
LVVCP+ L W E+E + P P L+FG +P+ ++ VV+ SY
Sbjct: 1274 SLVVCPSTLTGHWQHEIETYAPDLRP----LIFG--GDPLRRSQLKGELKKADVVIASYN 1327
Query: 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359
+ + D+ ++DE H ++ SK + KAV + A+ + ++LSGTP +
Sbjct: 1328 TISSEIDYLATLDFNYCVLDEGHVIKSSK----AKLSKAVKRLKAEHR--LVLSGTPIQN 1381
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+++ + L PG LG ++ F++ Y + + +KG L L KQ
Sbjct: 1382 NVLELWSLFDFLMPGFLG-SEASFSERYSRPIAASKDAKKSSAEQAKGAL--ALEALHKQ 1438
Query: 420 TV--MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RRLK+++L LPPK Q + L + + + S +D +N D
Sbjct: 1439 VLPFILRRLKENVLQDLPPKIIQDYQCELSPLQ----RDLYSSLGQSNEDGSN---ADDG 1491
Query: 478 DEH-------------------DDSGACCR----LGKISYQELGIA-KLSGFREWLSIHP 513
+H D S R + EL A KL R+ L
Sbjct: 1492 KQHVFQTLQYLRKLVNHPSLVLDASNPQHRTALANLAAAKNELEHAPKLEALRQLLWDCG 1551
Query: 514 VIAESDGAA-----DIDVNPRSNKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTL 565
+ +S G A DI+ + ++++++F +LD ++ + K + ++R+DG
Sbjct: 1552 IGLQSQGKAKAVKSDIEESIAAHRVLVFCQTRSMLDIIESMLFRKHMPTVSYMRLDGAIP 1611
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
R + V +F + + ++ GG+GL+ +SA V+F+E +P LQA DRAHR
Sbjct: 1612 SHQRFAIVKTFNRDPSIDVLLLTTHVGGLGLNLTSADTVIFVEHDLNPMKDLQAMDRAHR 1671
Query: 626 RGQTSAVNIYIFCAKDTTDE 645
GQ VN+Y KDT +E
Sbjct: 1672 LGQKRTVNVYRLITKDTLEE 1691
>gi|355576586|ref|ZP_09045841.1| hypothetical protein HMPREF1008_01818 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816823|gb|EHF01338.1| hypothetical protein HMPREF1008_01818 [Olsenella sp. oral taxon 809
str. F0356]
Length = 1085
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 126/469 (26%), Positives = 214/469 (45%), Gaps = 64/469 (13%)
Query: 196 SLLDVILPFQLEGVRFG-------LRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
SL ++ P+Q EG FG + GG ++ADEMGLGK+LQ I++ G L+
Sbjct: 623 SLAGLLRPYQAEG--FGWLSALCDMGFGG--ILADEMGLGKSLQLISLLLARRGRGLTLI 678
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRK 306
VCPA L +W E E++ P D+ +V G + R P V+V SY +L R +
Sbjct: 679 VCPASLVYNWQAEFEKFAP---QLDVAVVAGTAAERDRVRREPGHEVLVTSYDLLRRDVE 735
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ + ++DE+ +V+ + T VKA+ + L+GTP +R +++
Sbjct: 736 AWMAMPLWCEVLDEAQYVK-NHETLAARAVKAL-----DARHRFALTGTPIENRLSELWS 789
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MI 423
+ L PGLLG YD + + V+G EE+ L+ V ++
Sbjct: 790 IFDFLMPGLLG--SYDRFRDRYEQPIVEGD--------------EEVAQRLRAAVGPFVL 833
Query: 424 RRLKQHLLVQLPPKRRQII--RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
RRLK+ +L LP K Q++ R+ ++ + SA + A + SD+
Sbjct: 834 RRLKREVLHDLPEKLEQVVYARMEGEQRSLYSAS----------EQALRLSLTRQSDDGF 883
Query: 482 DSGACCRLGKIS-YQELGIAKLSGFREW----LSIHPVIAESDGAADIDVNPRSNKMIIF 536
DSG L +++ +++ F ++ + V+ A D +KM++F
Sbjct: 884 DSGKLQVLAELTRLRQICCDPRLLFEDYDGPSCKLDAVLELVQSAVD-----SGSKMLVF 938
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ L + + E+G + I G T + R V+ F ++ + +I + AGG GL
Sbjct: 939 SQFTSYLALIAHELDERGHPYYTITGATPKKRRLELVNVFN-EDQTPVFLISLKAGGTGL 997
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A VV + + + QA DRAHR GQT V +Y +D+ ++
Sbjct: 998 NLTGASIVVHADPWWNAAAQDQATDRAHRIGQTRDVMVYKVIVRDSIED 1046
>gi|442611152|ref|ZP_21025858.1| hypothetical protein PALB_28210 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441747080|emb|CCQ11920.1| hypothetical protein PALB_28210 [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 1370
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 210/474 (44%), Gaps = 60/474 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P L + P+Q +GV + +R G CL AD+MGLGKTLQAIA+ S G +V
Sbjct: 895 IPAQLKGSLRPYQHQGVEWAMRLAHWGAGACL-ADDMGLGKTLQAIAVIVSRASLGPSMV 953
Query: 249 VCPAILRLSWAEELERWLPFCLPAD---IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
V P + +W E R+ P + IH + HL F +++SY+++ RL
Sbjct: 954 VAPTSVCANWQSEFLRFAPSLKIVNLGHIHSAEARMDRLNHLQPF-DCILVSYSLMQRLE 1012
Query: 306 KSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSR 360
+ W ++ DE+ ++ S R+ K+ +A L+GTP +L+
Sbjct: 1013 NELQSIHWQTIVADEAQFLKNPLSGRSKSAYRFKSGFKMA--------LTGTPIENNLTE 1064
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ IF IN PGLLG K + ++ +K R E L LL
Sbjct: 1065 LWSIFRFIN---PGLLGNLKVFNQRFNVPIEKANDDPVA-----AKKAR-EGLKYLLS-P 1114
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RR K+ +L LP K + + L ++E+ ++ + +T ++ +
Sbjct: 1115 FLLRRTKEQVLKSLPHKTEINLDVQLSQAELAFYESV---------RLSAIETLSETAQL 1165
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP----------RS 530
++G Q +A+L R+ ++ ES +N
Sbjct: 1166 KNAG--------ERQLRMLAELVKLRQACCAPQLLVESSEIESSKINLLLELLEGLKVNG 1217
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
+K++IF+ + L ++ + + F +DG+T R++ + +FQ + + +I +
Sbjct: 1218 HKVLIFSQFVAFLQLIKAQLIKHNYRFNYLDGSTPVNVRKTQIDAFQ-RGDSDVFLISLK 1276
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644
AGG GL+ ++A V+ ++ +P++ QA DR HR GQ V IY A T +
Sbjct: 1277 AGGFGLNLTAASYVIHMDPWWNPAVENQASDRVHRIGQEKPVTIYRLVANQTIE 1330
>gi|338214484|ref|YP_004658545.1| SNF2-like protein [Runella slithyformis DSM 19594]
gi|336308311|gb|AEI51413.1| SNF2-related protein [Runella slithyformis DSM 19594]
Length = 981
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 220/474 (46%), Gaps = 65/474 (13%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS--- 245
LP++ L + P+Q G + F R G CL AD+MGLGKT+ +A+ G
Sbjct: 515 LPENFLGTLRPYQKAGYDWINFLNTYRFGGCL-ADDMGLGKTVTTLAMLQYQKEQGPHRP 573
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+V P L +W E R+ P L ++ NP + +++ SY ++
Sbjct: 574 SLLVMPTSLLYNWQLEARRFTP-QLRVLVYTGTYRDKNPAQFDGYD-LILTSYGIVRIDI 631
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + +I+DES ++ KAV+ + A+ + ++L+GTP + D++
Sbjct: 632 DLLKTYPFHYIILDESQAIK----NPSSHITKAVMQLEARHR--LILTGTPLENTTMDLW 685
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
Q+ + PGLLG Y +++ V + + R ++L L+K ++RR
Sbjct: 686 TQMTFVNPGLLGSQSY--FRSHFQVPI---------EKHNDEKRSQKLYALIK-PFLLRR 733
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS---DEHDD 482
K + + LP K V + + + EK K+ + ++ ++
Sbjct: 734 HKSQVALDLPSK--------------VESVHYCDMAEEQEKRYEETKSYYRNYILEQIEE 779
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVI------AESDGAADI-----DVNPRSN 531
SG Q + + L+ R+ L+ HP + ES +I ++ +
Sbjct: 780 SGIAKS------QIMVLQGLTKLRQ-LANHPRMIDEEYEGESGKLEEIQAKLEELLAGDH 832
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K++IF+ ++ L +++++ EK I + +DG+T DRQ+ V FQ E+KI +I + A
Sbjct: 833 KVLIFSQFIRHLSILRQYLDEKNIRYAYLDGST--ADRQAQVELFQEKEEIKIFLISLRA 890
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+GL+ ++A V L+ +P++ QA DRAHR GQ V Y F K++ +E
Sbjct: 891 GGLGLNLTAADYVFILDPWWNPAIEAQAIDRAHRIGQQRTVFTYKFITKNSVEE 944
>gi|153006150|ref|YP_001380475.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
Fw109-5]
gi|152029723|gb|ABS27491.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
Fw109-5]
Length = 1002
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 228/501 (45%), Gaps = 64/501 (12%)
Query: 191 GKLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---L 247
G P L + P+Q+EGV F RG R L+ADEMGLGKT QAIA A + G + L
Sbjct: 306 GAEPPGLRMKLYPYQVEGVAFLASRG-RALLADEMGLGKTAQAIAAMAQLVRRGDVRRTL 364
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLR 305
+VCP L+ W EL R P DI +V G R ++ P V+V SY +
Sbjct: 365 IVCPTSLKHQWVREL-RQFTTLEPVDIGVVAGAREARRAIYAEARP-VLVTSYELARADE 422
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + + LLI+DE+ ++ + RT VK + + + +L+GTP +R D++
Sbjct: 423 RELSDLAPDLLILDEAQRIK-NWRTRTASVVKGL-----RSRFAFVLTGTPLENRLDDLY 476
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR-LEELNVLLKQTVMIR 424
+ ++ P + G + F + + T+ G G R L+ L + V++R
Sbjct: 477 SLMQVVDPRIFGPL-WRFNEEFT---TLDG------SGRPAGYRNLDRLRARIA-PVVLR 525
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN-----DKTPKDSDE 479
R K+ +L LP + L+ R + + + D+E+ A + P E
Sbjct: 526 RRKEEVLSDLPDR-------LVSRLTVAMTREQQEIHADAEESAGRLLAILRRRPLSPVE 578
Query: 480 HDDSGACCRLGKISYQELGIA-KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
RL + ++Q + +A +G V ++ GA +D R + I
Sbjct: 579 EQ------RLMR-AFQRMRMACDAAGL--------VDKKTRGAPKLDELERLLEEICLGD 623
Query: 539 HLKVL-----DGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
KV+ + +Q +E G+G VR+ G R + + F+ E ++ +
Sbjct: 624 RRKVVVFSEWERMQAMAAELCERLGVGHVRLHGGVPSAARGALIDRFRDDPECRV-FLST 682
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
AGGVGL+ +A +VV L+LP +P+++ Q R HR GQ AVN+ + ++ + +E
Sbjct: 683 DAGGVGLNLQAASHVVNLDLPWNPAVLAQRIARVHRLGQREAVNVVLLVSEGSFEERLEA 742
Query: 650 NLNKSLRCVSSATNGKYDALQ 670
L+ ++A ++ ++
Sbjct: 743 TLDGKRALFAAAVGDDHETVE 763
>gi|348560752|ref|XP_003466177.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cavia
porcellus]
Length = 1477
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/504 (23%), Positives = 220/504 (43%), Gaps = 62/504 (12%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD DE K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 493 SDAEFDEGF-KVPGFLFRKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 549
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV--FGH 280
A F G ++VCP + W +E W P A +H + H
Sbjct: 550 LAGLSYSKIRTRGSNYRFEGLGPTMIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYAH 609
Query: 281 RNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
R + + +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 610 RKEKLIRDIAHCHGILITSYSYVRLMQDDISRHDWHYVILDEGHKIR---------NPNA 660
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 661 AITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFVFPGKLGTLPV-FMEQFSVPITMGG 719
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--RLLLKR 448
Y R +L+ T+ ++RR+K + + LP K Q++ RL ++
Sbjct: 720 YANASPVQVKTAYRC---ACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 776
Query: 449 SEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKL 502
++ + +K ++N + + + H D SG LG + +EL +
Sbjct: 777 HKVYQNFIDSKEVYQILNGEMQIFSGLVALRKICNHPDLFSGGPKNLGGLPDEELEEGQF 836
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPR-SNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
++ S ++ ES + + R ++++F+ ++L ++ F+ +G ++++D
Sbjct: 837 GYWKR--SGKMIVVESL----LKIWHRQGQRVLLFSQSRQMLHILEVFLRARGYSYLKMD 890
Query: 562 GNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAED 621
G+T RQ + + + + ++ GG+G++ + A V+ + +PS QA +
Sbjct: 891 GSTTIASRQPLITRYNQDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARE 950
Query: 622 RAHRRGQTSAVNIYIFCAKDTTDE 645
RA R GQ V +Y T +E
Sbjct: 951 RAWRIGQKRQVTVYRLLTAGTIEE 974
>gi|83649604|ref|YP_438039.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83637647|gb|ABC33614.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis KCTC
2396]
Length = 1106
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 220/464 (47%), Gaps = 64/464 (13%)
Query: 204 FQLEGVRF-GLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAIL 254
+Q EG+ + G R GG ++AD+MGLGKT+Q +A+ + + G + L+V P L
Sbjct: 646 YQQEGLNWLGFLREIEMGG--ILADDMGLGKTIQTLALLSVEKAQGRMDRPCLIVAPTSL 703
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLHRLRKSMI 309
+W +E E++ P + ++ H + RF R+ V+ +Y +L R + ++
Sbjct: 704 MSNWRKEAEKFAP-----GLKVLVLHGSQRAE--RFERIADNDLVLTTYPLLPRDSEYLL 756
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+QD+ LI+DE+ ++ K + + V + A+ + + L+GTP + +++ N
Sbjct: 757 KQDYHYLILDEAQTIKNPK----AQATQLVHRLEARHR--LCLTGTPMENHLGELWSLFN 810
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L PGLLG D K +T QG L + R++ M+RR KQ
Sbjct: 811 FLTPGLLG----DDRKFKTLFRTPIEKQGDLERQRLLSRRIKPF--------MLRRTKQE 858
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-KDATNDKTPKDSD-EHDDS---- 483
+ +LP K +I R +L + ++ V D + +DA K K S E D+
Sbjct: 859 VATELPEKT-EIQRTVLLEGKQRDLYESIRVAMDKKIRDAIAKKGVKRSHIEILDALLKL 917
Query: 484 -GACCRLGKISYQELGIAKLSG-FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541
CC + K S +S+ P + E K+++F+
Sbjct: 918 RQVCCDPSLLKLDSARKVKSSAKLDTLMSMLPSLLEE-----------GRKILLFSQFTS 966
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+L ++ + + GI +V++ G T +DR + V+ FQ + EV + +I + AGGVGL+ ++A
Sbjct: 967 MLGLIEAQLDKAGIEYVKLTGAT--KDRDTPVNRFQ-NGEVSLFLISLKAGGVGLNLTAA 1023
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ + +P++ QA DRA+R GQ V +Y + T +E
Sbjct: 1024 DTVIHYDPWWNPAVENQATDRAYRIGQDKPVFVYKLITEGTVEE 1067
>gi|294948918|ref|XP_002785960.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
marinus ATCC 50983]
gi|239900068|gb|EER17756.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
marinus ATCC 50983]
Length = 876
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 121/473 (25%), Positives = 211/473 (44%), Gaps = 80/473 (16%)
Query: 201 ILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIAACFI----------SAGSIL 247
+LP QL+G+R+ L+ ++ADEMGLGKT+Q IA+ A + L
Sbjct: 290 LLPHQLQGLRWLRSLKLNKLNGILADEMGLGKTIQVIALIASLMRDDPTKEDLSDLNRYL 349
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-----------VVVI 296
+V P +W E ++WLP A + ++ G + R V +
Sbjct: 350 IVVPLSTLPNWIAEFKKWLP---SARVVVLRGDLTTRRQIARVLHSRGVAPDVNYDVCLT 406
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
+ +L R K++ + W +I+DE H ++ AV V A+ + +LL+GTP
Sbjct: 407 TPEILIRETKTLSKVHWTYVIIDEGHKIKNHLSRFH----MAVSSVPARHR--LLLTGTP 460
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ +++ + L P + A FA+ + K +G+ + + L +L+ +
Sbjct: 461 LQNSLTELWALLKFLLPKVFTDAD-KFAEWFS--KPFEGHAASALTQEEQLLVLHKLHTM 517
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLL-----KRSEIVSAKAAVGVINDSEKDATN- 470
L Q ++RR K LP K ++ + L + + +A G + + N
Sbjct: 518 L-QPFLLRRTKSQ--ATLPKKIEHLVWVPLSAWQDRGMHQIMQRALCGGHGEQKVALRNV 574
Query: 471 ----DKTPKDS----DEHDDSGACCRL-GKISYQELGIAKLSGFREWLSIHPVIAESDGA 521
K + DE+D + R+ GK + + KL F
Sbjct: 575 LMQLRKMAQHPYLFLDEYDINDDLVRVSGKFELLDRLVPKLLHF---------------- 618
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ--LS 579
++K++IF+ +LD +++F+ KG+ + R+DG+T DRQSA+H F L+
Sbjct: 619 --------NHKVLIFSQMTCLLDILEQFLENKGLQWFRLDGSTSLEDRQSAMHRFNDPLN 670
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
++ I ++ AGG+GL+ +A V+ + +P + LQA DRAHR GQ S V
Sbjct: 671 HDTNIFLLSTRAGGLGLNLQAANTVILYDSDWNPQMDLQAMDRAHRVGQKSDV 723
>gi|406662036|ref|ZP_11070143.1| ATP-dependent helicase HepA [Cecembia lonarensis LW9]
gi|405554106|gb|EKB49231.1| ATP-dependent helicase HepA [Cecembia lonarensis LW9]
Length = 977
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/488 (26%), Positives = 224/488 (45%), Gaps = 93/488 (19%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GS 245
LP + + P+Q G +RF R G CL AD+MGLGKT+Q +A+ A A +
Sbjct: 511 LPATFKGKLRPYQKAGYNWLRFLNEYRFGGCL-ADDMGLGKTVQTLAMLAYEKEANPDAT 569
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHR 303
L+V P L +W E +++ P L + RF + +V+ SY +
Sbjct: 570 SLLVMPTSLIYNWELEAKKFTPKLKI----LTYTGTQRIKDNRRFAKYDLVLTSYGITRM 625
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + + +I+DES ++ P + KAV ++ + + ++L+GTP +
Sbjct: 626 DVDILKDFYFNYVILDESQAIK------NPGSIISKAVNELNCRQR--LILTGTPVENGT 677
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG-YQGQLFQDFSKGVRLEE---LNVLL 417
D++ Q+N + GLLG QG ++ Q Q K +++ L+ ++
Sbjct: 678 MDLWSQMNFINKGLLG---------------TQGMFKKQFLQPIEKKNDMDKAAKLHAMI 722
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K ++ RRLK + LP K +++ K + TP+
Sbjct: 723 KPFIL-RRLKTQVATDLPEK-------------VINVKYST-------------MTPEQE 755
Query: 478 DEHDDSGACCR--------LGKISYQELGIAK-LSGFREWLSIHPVIAESDGAADI---- 524
+++ R + + Q+ + + L+ R+ ++ HP + + D
Sbjct: 756 KAYEEVKGYYREKIVNEMTIPGLRNQQFTLLRGLTQLRQ-IANHPRLTDKSYKGDSGKLE 814
Query: 525 DV-------NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
DV +K+++F+ ++ L V+E++ E+GI + +DG T +DRQ V FQ
Sbjct: 815 DVIHMLEATASEGHKVLVFSQFVRHLGIVREYLDEQGIKYAYLDGAT--KDRQGQVREFQ 872
Query: 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637
+ E+KI +I + AGGVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F
Sbjct: 873 ENQEMKIFLISLKAGGVGLNLTKAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVMIYKF 932
Query: 638 CAKDTTDE 645
+T +E
Sbjct: 933 ITHNTVEE 940
>gi|294055867|ref|YP_003549525.1| SNF2-like protein [Coraliomargarita akajimensis DSM 45221]
gi|293615200|gb|ADE55355.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
Length = 843
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 124/492 (25%), Positives = 221/492 (44%), Gaps = 57/492 (11%)
Query: 197 LLDVILPFQLEGVRF--GLRRGG-RCLIADEMGLGKTLQAIAIA-ACFISAGSILVVCPA 252
L D + P+Q GV++ LRR L+ADEMGLGKTLQ + + A + S L+VCPA
Sbjct: 376 LPDFLRPYQAHGVQWMSNLRRHSCHGLLADEMGLGKTLQVLTLLHASPVPGKSSLIVCPA 435
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD 312
+ W E RW P ++ N P++ + SYT L R + + +
Sbjct: 436 SVVPVWESEAARWYP-----EMDTAVLRSNQTFDDVGAPKLWIASYTQLRRHKHLLDSAE 490
Query: 313 WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372
+ ++DE+ +++ + + A + A+ + + L+GTP +R D++ L
Sbjct: 491 FGYAVLDEAQYIK----NPDAKVTHACCAIQAECR--IALTGTPLENRLLDLWTLFRFLM 544
Query: 373 PGLLG-KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431
PGLLG + +++ A +D + + EE + ++RR K +
Sbjct: 545 PGLLGNRRRFEDAVE--------------LEDSERRAQFEERLRMQIAPFLLRRKKDAVG 590
Query: 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD--------S 483
LP K + L+ S++ + G++N ++ +D + +
Sbjct: 591 ADLPAKVE--MDLICPISDL-QRQVYEGLLNKGREELGDDLQAAMQSQATNFFTLLTRLR 647
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAES-DGAADIDVNPRSNKMIIFAHHLKV 542
ACC G I + + SG + L IH + E+ +GA + K++IF+ +++
Sbjct: 648 QACCDPGLIPEVAAPLEQ-SGKIQTLLIH--LEEALEGAG-------ARKVVIFSQFVQL 697
Query: 543 LDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600
L ++ I K + + + G T RDR V +FQ + + ++ + AGG G+ +
Sbjct: 698 LTRLKPEIKAKFPKVALLELTGQT--RDRSKPVETFQNKDGPAVILVSLRAGGTGITLHA 755
Query: 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS 660
A V L+ +P++ QA DR HR GQ V +Y + T +E Q+L + R +
Sbjct: 756 ADYVFLLDPWWNPAVENQAVDRVHRIGQQKRVFVYRMITQGTIEE-RIQHLKREKRELFE 814
Query: 661 ATNGKYDALQEI 672
T G + Q++
Sbjct: 815 NTLGNLGSAQDL 826
>gi|374376395|ref|ZP_09634053.1| SNF2-related protein [Niabella soli DSM 19437]
gi|373233235|gb|EHP53030.1| SNF2-related protein [Niabella soli DSM 19437]
Length = 952
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 194/454 (42%), Gaps = 81/454 (17%)
Query: 221 IADEMGLGKTLQAIAIAACFIS-------AGSILVVCPAILRLSWAEELERWLPFCLPAD 273
+AD+MGLGKTLQ+I CFI+ LVVCPA L +W +EL+++ P
Sbjct: 514 LADDMGLGKTLQSI----CFITKILEEHPGAQALVVCPASLIYNWEQELKKFAPHLRTVV 569
Query: 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEP 333
H G + +V++ SY L + + ++ +DESH+++
Sbjct: 570 YH---GAQRTATIDDPAAQVIITSYGTLRAAEERFAVIPYKVVFIDESHNIK-------- 618
Query: 334 EEVKAVLDVAAKVKRIV---------LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFA 384
+ AAK+ R V LSGTP ++ +D++ Q+N + PGL G ++ F
Sbjct: 619 -------NPAAKITRAVGNLRGDLFFALSGTPVVNNTFDLYAQLNTVLPGLFGSREF-FK 670
Query: 385 KTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL 444
+ Y D ++ V+ ++L L+ V+ RR K+ + LP K I+
Sbjct: 671 REYADP----------IDRYADEVKQQQLQKLIAPFVL-RRTKEQVATDLPEKMETILWC 719
Query: 445 LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504
+ S+ +AA + + + S + A +L + GI KL
Sbjct: 720 DMGESQ----RAAYEEVKEQIRGEVF------SGIKTNGIAKSKLNVLQ----GILKLRQ 765
Query: 505 FREWLSIHPVIAESDGAADID----------VNP--RSNKMIIFAHHLKVLDGVQEFISE 552
+ P++ E A D + P +K+++F+ ++LD + E +
Sbjct: 766 ----ICNSPLLVEEAAAFSSDAIKMNILFDELEPIRSQHKVLVFSQFTRMLDLLAETCDQ 821
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ 611
I + DG T P R V +FQ N + +I + AG GL ++A V +
Sbjct: 822 NNISYFHFDGQTPPAQRAQMVETFQQPGNTTNLFLISLKAGNAGLTLTAADYVFLFDPWW 881
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ ++ QA +R HR GQ V Y +++ +E
Sbjct: 882 NEAVQQQAINRTHRIGQQKNVFAYKMICRNSIEE 915
>gi|358339451|dbj|GAA47514.1| chromodomain-helicase-DNA-binding protein 1-like, partial
[Clonorchis sinensis]
Length = 1315
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 215/483 (44%), Gaps = 69/483 (14%)
Query: 204 FQLEGVRF----GLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRL 256
+QL GV + L+ G ++ DEMGLGKT Q IA + + S+L+VCP +
Sbjct: 39 YQLSGVSWLASCSLQNRG-AILCDEMGLGKTCQVIAFLSVYFRRKPHSSVLLVCPLSVMD 97
Query: 257 SWAEELERWLP---FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDW 313
+W EL+R+ P F + + V + + + P +++ +Y + + + W
Sbjct: 98 NWINELKRFFPSIGFLIYSGDQNVREEKRSAFKVNPSP-ILLTTYELCINDQLFLETVSW 156
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
+L+VDE H ++ S + VL + R +L +GTP + +++ ++ + P
Sbjct: 157 DILVVDEGHRLKNSDSL-----LYRVLSETCRKLRFIL-TGTPVQNNLTELYSLLHFVSP 210
Query: 374 GLLGKA-KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432
K+ + DF + + + + VR ++ LL+ ++RR KQ +L+
Sbjct: 211 SHFPKSLRVDFVNYFGTLDPTE-----------QAVRDMQMGNLLR-PFLLRRTKQQVLL 258
Query: 433 ------------QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
L P + +I R LL R+ A V++ +E A K P +
Sbjct: 259 DLPPRLDLLIYHSLTPLQTKIYRALLTRN----ADVLTSVVS-TELGAPRTKVPT----Y 309
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDV-----NPRS----- 530
+ +L K + L H ++A S + NP
Sbjct: 310 RVTNLLLQLRKCVDHPYLFDGVEPEPFELGDHLILASSKLVLLDLLLDYLYNPFDQRQES 369
Query: 531 -------NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
+K++IF+ ++LD VQ++++ K + R+DG+ DR SAV+ F SNE
Sbjct: 370 TRHVGPVHKVLIFSQMTRMLDIVQDYLTLKDYSYERLDGSVRGEDRVSAVNCFNRSNETF 429
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ ++ AGG GL+ +A V+F++ +P +QA RAHR GQT V + +DT
Sbjct: 430 VFLLSTKAGGQGLNLVAADTVIFIDSDFNPQNDIQAAARAHRIGQTKPVRVIRLVGRDTV 489
Query: 644 DES 646
+E+
Sbjct: 490 EEA 492
>gi|307209151|gb|EFN86289.1| DNA excision repair protein ERCC-6 [Harpegnathos saltator]
Length = 1005
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 124/535 (23%), Positives = 226/535 (42%), Gaps = 99/535 (18%)
Query: 178 PEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQ 232
PE+ + +D + K+P+S+ D + +Q V++ G + GG L+ DEMGLGKT+Q
Sbjct: 238 PENKAMHKLDNLF-KVPQSIWDRLYRYQKIAVQWLWELHGRKLGG--LLGDEMGLGKTVQ 294
Query: 233 AIAIAAC------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGH 280
IA A F G +V+CP L W + W PF +H G+
Sbjct: 295 VIAFLAGLDCSELLSHNGRFRGLGPTIVICPVTLMEQWVKHFHEWWPFVRVVVLHHTGGY 354
Query: 281 RNNPVHLTRFPR---VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337
+ +P L + +++ISY + + + +I W +I+DE H +R +
Sbjct: 355 KGDPEDLIESLQTGGILIISYNGVLKHKDLIISSQWHYVILDEGHTIRNPQ--------- 405
Query: 338 AVLDVAAKVKRI-----VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKT 392
+ ++ VKR+ +LL+G+P + +++ + + PG LG F + T
Sbjct: 406 --VKISRAVKRLQTPHRLLLTGSPMQNSLKELWSLFDFILPGKLGTLPV-FLEHCASPIT 462
Query: 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRR----LKQHLLVQLPPKRRQIIRLL 445
GY + +++ +LK T+ ++RR +K HL LP K Q++
Sbjct: 463 RGGYVNATPLQEATALQVA---TMLKDTITPYLLRRTKTDVKHHL--TLPEKNEQVLFCS 517
Query: 446 LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505
L + K + ++ ++KT H +SG Y+ + LS
Sbjct: 518 LTDEQKKLYKKY--LCSEDVSFILHEKT-----NHHESG--------RYRARFLIALSAL 562
Query: 506 REWLSIHPVI----AESDGAADIDVN----------PRSNKM-----------------I 534
R+ + HP + + D DID++ R+ KM +
Sbjct: 563 RK-ICNHPDLFLYTRQLDSEEDIDLSEELLEKFGYWKRAGKMTVVRSLLKIWQKQGHRVL 621
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+F ++++ ++ + +G ++R+DG+T RQ + F + + ++ GG+
Sbjct: 622 LFTQGIQMIHILESLLQHEGYTYLRLDGSTAMSQRQHVIQMFNNNPSYFVFLLTTRVGGL 681
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
GL+ + A V+ + +P+ QA RA R GQ V IY T +E +
Sbjct: 682 GLNLTGANRVIIYDPDWNPATDAQARARAWRIGQNKQVTIYRLITAGTIEEKMYH 736
>gi|168062755|ref|XP_001783343.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
patens subsp. patens]
gi|162665144|gb|EDQ51838.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
patens subsp. patens]
Length = 2174
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 224/490 (45%), Gaps = 48/490 (9%)
Query: 180 HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAI 236
H E+VDE L L +QL G+R+ + L +ADEMGLGKT+Q IA+
Sbjct: 1455 HSVKEIVDEQPLTLEGGKL---REYQLSGLRWLVSLYNNHLNGILADEMGLGKTVQVIAL 1511
Query: 237 AACFISA----GSILVVCPAILRLSWAEELERWLP------FC-LPADIHLVFGHRNNPV 285
+ A G L+V P+ + +W EL RW P +C P + ++ P
Sbjct: 1512 ICYLMEAKNDHGPFLIVVPSSVLPNWLAELSRWAPRVSVIAYCGAPDERRRLYKEEIQPQ 1571
Query: 286 HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345
V + M R + + W +I+DE H ++ + ++ A L
Sbjct: 1572 QFNVL--VTTYEFLMSKHDRPKLAKIPWHYIIIDEGHRIKNASC-----KLNAELKQYQS 1624
Query: 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFA----KTYCDVKTVQGYQGQLF 401
R+ LL+GTP + +++ +N L P + + DFA K + +V + L
Sbjct: 1625 THRL-LLTGTPIQNNLEELWALLNFLLPSIFNSSD-DFAQWFNKPFENVADPTAEEQALL 1682
Query: 402 QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR--------LLLK--RSEI 451
+ + + L+ +L+ M+RRLK + +LP K +++R LL+K + ++
Sbjct: 1683 TEEENLLIINRLHQVLR-PFMLRRLKHKVENELPEKIERLVRCEASAYQKLLMKHVKDKM 1741
Query: 452 VSAKAAVG-VINDSEKDATND-KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509
S A G I ++ + N P S H + ++ Y + + + G E L
Sbjct: 1742 KSLNHAKGRSIQNTVMELRNICNHPYLSQLHSEE--TEKVLPPHYLPI-VVRFCGKLEML 1798
Query: 510 S-IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD 568
I P + ++ + + + + ++ F+ ++LD +++++ KG ++R+DG+T +
Sbjct: 1799 DRILPKLKAANHKVSLMTSRKGHSVLFFSTMTRLLDVMEDYLEWKGYKYLRLDGSTGGSE 1858
Query: 569 RQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627
R + + F +E I ++ I AGG+G++ +A V+ + +P + LQA+ RAHR G
Sbjct: 1859 RGALIQDFNAPQSEAFIFLLSIRAGGIGINLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1918
Query: 628 QTSAVNIYIF 637
Q V + F
Sbjct: 1919 QKRDVLVLRF 1928
>gi|254244620|ref|ZP_04937942.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
gi|126197998|gb|EAZ62061.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
Length = 666
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 204/455 (44%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 260 LLAHQPAGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 317
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++NP + ++++Y L + +A++++D
Sbjct: 318 REIQEVYPSA------TVAIQQDNPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 364
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 365 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 417
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 418 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 460
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 461 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 494
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 495 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 543
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 544 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 603
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 604 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 638
>gi|107099852|ref|ZP_01363770.1| hypothetical protein PaerPA_01000872 [Pseudomonas aeruginosa PACS2]
gi|410685796|ref|YP_006960448.1| putative helicase [Pseudomonas aeruginosa]
gi|416863473|ref|ZP_11915300.1| putative DNA helicase [Pseudomonas aeruginosa 138244]
gi|424940153|ref|ZP_18355916.1| putative helicase [Pseudomonas aeruginosa NCMG1179]
gi|37955686|gb|AAP22525.1| putative helicase [Pseudomonas aeruginosa]
gi|334835375|gb|EGM14254.1| putative DNA helicase [Pseudomonas aeruginosa 138244]
gi|346056599|dbj|GAA16482.1| putative helicase [Pseudomonas aeruginosa NCMG1179]
gi|453048084|gb|EME95797.1| putative helicase [Pseudomonas aeruginosa PA21_ST175]
Length = 657
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 204/455 (44%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPAGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++NP + ++++Y L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDNPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 629
>gi|187934940|ref|YP_001886534.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
gi|187723093|gb|ACD24314.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
Length = 1050
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 220/475 (46%), Gaps = 76/475 (16%)
Query: 193 LPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+P +L + +Q++G R+ L GG ++ADEMGLGKT+Q I+ + +
Sbjct: 589 IPSNLNATLREYQVKGYRWLKNLSKLGFGG--ILADEMGLGKTIQIISFLLSEPNKKA-F 645
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHR--LR 305
V+ P L +W EE +++ P IH RN + +++ +Y L L+
Sbjct: 646 VITPTSLIYNWDEEFKKFAPSLKVGIIHGDLKARNKVLDDIEKYDLIITTYGTLRNDYLK 705
Query: 306 KSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
I+ D+ LI+DE+ ++ +K T + +KA + A L+GTP + D
Sbjct: 706 YENIKFDY--LIIDEAQNINNPKAKVTEVVKGIKANIRFA--------LTGTPVENNLID 755
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ + + PG L +K +F+K + + + EEL +++ ++
Sbjct: 756 LWSLFDFIMPGYLF-SKDEFSKKFTN---------------NDEKSKEELRIMINPYIL- 798
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHD 481
RRLK+ ++ +LP K + + +++ K V I D K D+ N+
Sbjct: 799 RRLKKDVIKELPNKIEDRFFVEMTKNQKKIYKMYVKDIQDKLKQIDSRNN---------- 848
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD---GAADIDVN--------PRS 530
R+ +Y L+ R+ L + P I D G+ I+V +
Sbjct: 849 ------RIAIFAY-------LTRLRQ-LCLDPSIIVEDYDGGSGKINVAKELIKKSIKNN 894
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
+K+++F+ VL V + + + I ++ +DG+T ++R H F + ++KI +I +
Sbjct: 895 HKILLFSQFTSVLHKVCDELKGEQISYLYLDGSTPSKERIRLTHEFNNNEDIKIFLISLK 954
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ +SA V+ + +P++ QA DRAHR GQ + V + K++ +E
Sbjct: 955 AGGTGLNLTSADMVIHFDPWWNPAIEDQATDRAHRIGQKNVVQVIKLITKESIEE 1009
>gi|404450283|ref|ZP_11015267.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403764019|gb|EJZ24935.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 976
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 222/478 (46%), Gaps = 73/478 (15%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAACF--ISAGSI 246
LP + P+Q G +RF + G CL AD+MGLGKT+Q +A+ A ++ G+
Sbjct: 510 LPIGFKGKLRPYQKAGYNWLRFLAEYKFGGCL-ADDMGLGKTVQTLAMLAHQKEVNPGTT 568
Query: 247 -LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHR 303
L+V P L +W E +++ P L L + RF + +V+ SY + R
Sbjct: 569 SLLVMPTSLIYNWELESKKFTP-SLKI---LTYTGTQRVKKTDRFAKYDLVLTSYG-ITR 623
Query: 304 LRKSMIEQDWA-LLIVDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSR 360
+ +++ + +I+DES ++ P + KAV ++ K K ++L+GTP +
Sbjct: 624 MDIDILKGFYFNYIILDESQAIK------NPSSIISKAVGELNCKQK--LILTGTPVENG 675
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
D++ Q+N + GLLG + F K + +Q + Q D K +L L +
Sbjct: 676 TMDLWSQMNFINKGLLG-GQSMFKKQF-----LQPIEKQ--NDMDKAAKLHAL----IKP 723
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
++RRLK + LP K +++ K S A +K ++ +
Sbjct: 724 FILRRLKTQVATDLPEK-------------VINVKY-------STMTADQEKAYEEVKGY 763
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSI--HPVIA----ESDGAADIDV-------N 527
+ + L G + I HP +A ESD DV
Sbjct: 764 YREKIVKEMSIPGLKNQQFTLLRGLTQLRQIANHPKLADKKYESDSGKLEDVIHMLQATA 823
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K++IF+ ++ L V+ + E+ I + +DG T +DRQ+ V SFQ VKI +I
Sbjct: 824 SEGHKVLIFSQFVRHLGIVKAHLDEQNIKYAYLDGTT--KDRQAQVRSFQEDESVKIFLI 881
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVGL+ ++A+ V L+ +P++ QA DRAHR GQ + V IY F ++T +E
Sbjct: 882 SLKAGGVGLNLTAAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVIIYKFITRNTVEE 939
>gi|428180190|gb|EKX49058.1| hypothetical protein GUITHDRAFT_52900, partial [Guillardia theta
CCMP2712]
Length = 527
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 123/490 (25%), Positives = 218/490 (44%), Gaps = 72/490 (14%)
Query: 203 PFQLEGVRFGLRR---------GGRCLIADEMGLGKTLQAIAIAACFISAGSI------- 246
P Q+ G +F + C++ADEMGLGKTLQ+IA+ +
Sbjct: 13 PHQIAGTKFLYKNLMTKHPNSIVSGCILADEMGLGKTLQSIALIWTLMKQSPFSLTDPIV 72
Query: 247 ---LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF-----PRVVVISY 298
++VCP+ L +WA E+++WL + + G N + F RV++ISY
Sbjct: 73 RKAIIVCPSSLVFNWANEIKKWLGDQRLSAQAITKGGTNASNDVNDFVKGNVKRVLIISY 132
Query: 299 TMLHRLRKSMIE-QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
ML R + + Q+ L++ DE ++ + + A+ K +LLSGTP
Sbjct: 133 DMLRRHIQMLSRYQNIQLVVCDEGQKLKNIDGNKTIDSLNAL-----PCKMRILLSGTPV 187
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD--VKTVQGYQGQLFQDFSKGVRLEELNV 415
+ + + +N + PG LG K F K + D +K+ + Q K RL+E
Sbjct: 188 QNDLDEFYAMVNWVCPGTLGAPK-QFRKIFADAIIKSRDKSCSKDLQRIGKK-RLKE--- 242
Query: 416 LLKQT--VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-KDATNDK 472
L+K+T +++RR + ++ Q+PPK ++I R + K +++ SE K A
Sbjct: 243 LIKRTSPIVLRRTSKDIVAQMPPKYEKVI---FCRPSPLQKKIYKSLLSSSELKKAIEGN 299
Query: 473 TPKDSDEHDDSGACCRLGKISYQELG-IAKLSGFREWLSIHPVIAESDGAADI----DVN 527
+ G++ + + + K + ++ + + E + ++I D+N
Sbjct: 300 S----------------GQVVFTIISKLTKALNHPDLVTANQIEDEQNNNSNISLKFDIN 343
Query: 528 PR-------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLS 579
R +++++I +++ LD V + VR+DG+T R V SF S
Sbjct: 344 TREFFPSSTNDRVVIVSNYTTSLDLVDTICKKLSYKTVRLDGSTEISKRSDIVSSFNNPS 403
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ + + ++ AGGVGL+ V+ L+ +P+ LQA R R GQ V +Y
Sbjct: 404 SGIFVFLLSSKAGGVGLNLIGGNRVILLDPSWNPAHDLQAMARVWRFGQPKPVFVYRLLT 463
Query: 640 KDTTDESHWQ 649
T +E +Q
Sbjct: 464 TGTIEERIFQ 473
>gi|301092506|ref|XP_002997108.1| chromatin structure-remodeling complex subunit snf21-like protein
[Phytophthora infestans T30-4]
gi|262111604|gb|EEY69656.1| chromatin structure-remodeling complex subunit snf21-like protein
[Phytophthora infestans T30-4]
Length = 1309
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 127/574 (22%), Positives = 252/574 (43%), Gaps = 76/574 (13%)
Query: 191 GKLPKSLLDVI----LPFQLEGVRFGLRRGGRCL---IADEMGLGKTLQAIAIAACFISA 243
G+LP+ L ++ +QL G+++ + L +ADEMGLGKT+Q+I++
Sbjct: 470 GELPRQPLMLVGGDLKEYQLRGLQWMVSLYDNHLNGILADEMGLGKTIQSISLLTYVTEV 529
Query: 244 ----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP-----VHLTRFP--- 291
G LVV P +W E ++W P D+ LV ++ P +H
Sbjct: 530 KHNHGPFLVVVPLSTLSNWVNEFKKWAP-----DLVLVV-YKGPPQVRKELHKQEMASCQ 583
Query: 292 -RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
V++ +Y + + + + + DW +IVDE H ++ ++ + L + +
Sbjct: 584 FNVLLTTYEYIMKDKHVLRKYDWQYIIVDEGHRMKNAQ-----SKFAMTLGSMYTSRNRL 638
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKA---KYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
LL+GTP + +++ +N L P + + F+K + + G +L D +
Sbjct: 639 LLTGTPLQNSLPELWALLNFLLPTIFESVDTFEQWFSKPFAQF-SGNGDSNEL-SDEERM 696
Query: 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD 467
+ + L+ +L+ ++RR+K +L QLP K ++++ L S + E
Sbjct: 697 LIINRLHQVLR-PFLLRRVKASVLDQLPDKVEKVLKCEL------SGWQKIMYRRIQEGG 749
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDG-AADIDV 526
A +T DDSG + GK Y G++ + + HP + +++G D D+
Sbjct: 750 ALLMETT------DDSGK--KKGKAKYTSKGLSNVLMQLRKVCNHPYLFQTNGYQIDFDI 801
Query: 527 NPRSNK-----------------MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569
S K +++F+ +++ ++++ + +G ++R+DG+T +R
Sbjct: 802 VRSSGKFELLDRMLPKLKAAGHRVLMFSQMTQLMHVLEDYFNYRGFRYLRLDGSTSADER 861
Query: 570 QSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628
+ + F S+ I ++ AGG+GL+ ++A V+ + +P++ QA+DRAHR GQ
Sbjct: 862 EQRMFMFNASDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQ 921
Query: 629 TSAVNIYIFCAKDTTDE------SHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEM 682
+ V ++ +E + N+N + N +A + +E + +E
Sbjct: 922 KNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNKSKEAERRAMLESLIKMEQ 981
Query: 683 SDKTDRGSEDLTLDQVASSDQFQELMKVPESSEA 716
+ D V D+ E+M + + A
Sbjct: 982 EEAAHAAHGDDESSNVLLDDEINEMMALTDEELA 1015
>gi|392952294|ref|ZP_10317849.1| hypothetical protein WQQ_19210 [Hydrocarboniphaga effusa AP103]
gi|391861256|gb|EIT71784.1| hypothetical protein WQQ_19210 [Hydrocarboniphaga effusa AP103]
Length = 766
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 118/467 (25%), Positives = 227/467 (48%), Gaps = 65/467 (13%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIA-------IAACFISAGSILVVCPA 252
P+Q EG+ F G ++AD+MGLGKT+Q +A AG LV+CP
Sbjct: 302 PYQREGLGWLNFLAEAGIGGILADDMGLGKTVQVLAHLLSEKQRGRIGGEAGPALVICPT 361
Query: 253 ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLHRLRKS 307
L +W E +R+ P D+ ++ H N+ +F + V+ +Y +L R R++
Sbjct: 362 SLVGNWRAEAQRFAP-----DLRVLVLHGND--RKRKFKAITHVDLVISTYPLLGRDREA 414
Query: 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367
+ Q +ALLI+DE+ ++ + RT + + + + KR + ++GTP + +++ Q
Sbjct: 415 LAAQRFALLILDEAQAIK-NARTLAAKAARTL-----RAKRRLSITGTPMENHLGELWAQ 468
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
+++ PGLLG K + V+ Y+ + + VR ++LN + +M+RR K
Sbjct: 469 FDLVEPGLLGDEK----------RFVRHYRTPIEKHGDAEVR-DKLNRRIA-PLMLRRRK 516
Query: 428 QHLLVQLPPKR--RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+ +L+ LPPK ++++ L ++ E+ ++ ++ +D+ + SG
Sbjct: 517 EDVLLDLPPKTEIQRLVELEGRQRELYETLRLAQ--HERVREVVSDRGV------EGSGI 568
Query: 486 CCRLGKISYQEL----GIAKLSGFR---EWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ +++ + KL G R + + ++ G D ++++F+
Sbjct: 569 IVLDALLKLRQVCCDPRLVKLEGARRVPQSAKLDLLLTMLQGVVD-----EGRRVLVFSQ 623
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
++LD + E + + I + + G T RDR++ V FQ + E + +I + AGG+GL+
Sbjct: 624 FTEMLDIIAEACAAQRIEHLMLTGQT--RDREAVVARFQ-NGEAPVFLISLKAGGMGLNL 680
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ + +P++ QA DRA+R GQ V +Y T +E
Sbjct: 681 TAADTVIHYDPWWNPAVESQATDRAYRIGQDKPVFVYRLICAGTVEE 727
>gi|403221224|dbj|BAM39357.1| uncharacterized protein TOT_010000815 [Theileria orientalis strain
Shintoku]
Length = 1818
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 126/479 (26%), Positives = 215/479 (44%), Gaps = 67/479 (13%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QL G+ + ++RG L+ADEMGLGKT+Q I++ F+ G L++ P
Sbjct: 802 YQLTGLNWMVNRMKRGLSVLLADEMGLGKTVQTISLVGHFMYKEFLVGPYLIIVPQSTID 861
Query: 257 SWAEELERWLP----FCLPADIHLVFGHRNNPVHLTRFPR--------------VVVISY 298
+W E E WLP C + R + P ++ S
Sbjct: 862 NWMREFENWLPQANAVCYYGNAQAREMIRQRELCKIGIPGKGERYKCDICITTPSIINSP 921
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
L LRK W L++VDE+H ++ SKR E ++ A K +LLSGTP
Sbjct: 922 VDLEFLRKI----SWQLMVVDEAHQLKNKHSKRFIE------LMHFMADYK--LLLSGTP 969
Query: 357 ---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
+L + + H IN P + + DF + Y +++ G+ +K +L L
Sbjct: 970 LHNNLEELWTLLHFIN---PQIYTYYE-DFRRRYSEIENPAAI-GE-----NKQKQLLSL 1019
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
L + V+ RR+K+ + LP K +I+R+ L +I K + + E+ A N
Sbjct: 1020 QHELHEFVL-RRVKKDVEKSLPNKVERILRVELSPMQIEWYKNILA--RNYEELARNSGG 1076
Query: 474 PKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNP 528
+ S ++ C L K+ + + WL +I S +D +
Sbjct: 1077 SRSSLQN----ICMELKKVCNHPFLCYEPEDRQVWL--QGLIYGSGKICLLDKLLQRLKE 1130
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-II 587
+ ++++IF+ +++L+ + E+++ +G R+DG R+ A+ F N ++
Sbjct: 1131 KGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKAMDHFNDPNSDDFCFLL 1190
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
AGG+G++ +SA V+ + +P LQAE RAHR GQT V IY KD+ +++
Sbjct: 1191 STKAGGLGINLTSADTVIIYDSDWNPQNDLQAEARAHRIGQTKTVQIYRLVTKDSIEQT 1249
>gi|347535643|ref|YP_004843068.1| Superfamily II DNA/RNA helicase [Flavobacterium branchiophilum FL-15]
gi|345528801|emb|CCB68831.1| Superfamily II DNA/RNA helicase [Flavobacterium branchiophilum FL-15]
Length = 1220
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 211/449 (46%), Gaps = 65/449 (14%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELERWLPFCLPA 272
G CL AD+MGLGKTLQ IA + L++ P L +W E+E++ P L
Sbjct: 781 GGCL-ADDMGLGKTLQTIAFLQYLKTTQKAKTPSLIIAPTSLIFNWINEIEKFCP-TLKV 838
Query: 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRT 330
+ G + ++ +V+ +Y L + + + + +I+DES ++ SKR
Sbjct: 839 LPFVGSGRATSTAEFKKY-NIVISTYGSLLNDIEFLKDYVFNYVILDESQAIKNPNSKR- 896
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
KAV + + K + L+GTP + +D++ Q+N L PGLLG + F + D
Sbjct: 897 -----YKAVRLLQSFNK--LTLTGTPIENNTFDLYAQLNFLNPGLLGSMSH-FKSQFSDT 948
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLK 447
D K V E +VLL + + ++RR K+ + +LP K +I +
Sbjct: 949 I-----------DKEKDV---ESSVLLSKIIAPFVLRRTKEQVAKELPDKTESVIYCDMS 994
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507
+ + + D KD +K D++G Q + L+ R+
Sbjct: 995 KEQ----RKVYEAFKDKYKDYLLNKI-------DENGVAKS------QMYILEGLTKLRQ 1037
Query: 508 WLS----IHPVIAESDGAADIDV-------NPRSNKMIIFAHHLKVLDGVQEFISEKGIG 556
+ I+ + + +A +++ ++K+++F+ +K+L V++ + ++ I
Sbjct: 1038 ICNSTELINDDVDYGNYSAKLEILIETIKEKTGNHKILVFSQFVKMLQIVRKRLDDEQIT 1097
Query: 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616
+ +DG T ++RQ V++FQ ++ V++ +I + AGG GL+ + A V ++ +P+L
Sbjct: 1098 YEYLDGQT--QNRQQNVNNFQTNSSVRVFLISLKAGGTGLNLTEADYVFIIDPWWNPALE 1155
Query: 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QA DR +R GQT V Y +DT +E
Sbjct: 1156 NQAIDRCYRIGQTKQVMAYRMICRDTIEE 1184
>gi|416873897|ref|ZP_11917775.1| putative DNA helicase [Pseudomonas aeruginosa 152504]
gi|334844087|gb|EGM22666.1| putative DNA helicase [Pseudomonas aeruginosa 152504]
Length = 667
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 204/455 (44%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETMKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 629
>gi|403714298|ref|ZP_10940225.1| putative helicase [Kineosphaera limosa NBRC 100340]
gi|403211667|dbj|GAB94908.1| putative helicase [Kineosphaera limosa NBRC 100340]
Length = 1099
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 120/470 (25%), Positives = 214/470 (45%), Gaps = 57/470 (12%)
Query: 194 PKSLLDVILPFQLEGVRF--GLRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSI-- 246
P L + P+QL+G ++ LR GG ++AD+MGLGKT+QA+A +AG +
Sbjct: 631 PPGLQATLRPYQLDGFQWLTYLREHQLGG--VLADDMGLGKTMQALAALEHAKAAGQLER 688
Query: 247 --LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-HLTRFPRVVVISYTMLHR 303
LV+ P + +W E R+ P + R P+ L +VV SY ++
Sbjct: 689 PALVIAPTSVIDTWCREAARFTPGLRVRAVTQTSAKRREPLPDLAAECDIVVTSYAIVRI 748
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
S +EQ W+ +++DE+ V+ + ++ +V L+ K+ ++GTP + D
Sbjct: 749 DADSFLEQPWSAVLLDEAQAVKNPR--AKTHQVVRSLNAPTKIA----ITGTPLENSLLD 802
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423
++ +++ PGL K F +TY +G Q +L + + VR +M+
Sbjct: 803 LWALLSITAPGLFPKLGA-FVETYRKPIENEGNQERLAR-LQRRVR----------PLML 850
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLK--------RSEIVSAKAAVGVINDSEKDATNDKTPK 475
RR K+ + +LPPK+ Q++R+ L R + +G++ D +++
Sbjct: 851 RRTKEAVAPELPPKQEQVMRIDLAPAHRRAYDRRLQRERQRVLGLLKDFDRNRV------ 904
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
A R + ++L +A + E I E+ V ++ ++
Sbjct: 905 ---------AIFRSLTV-LRQLALAPVLVDPEHARIPASKVEAFAEQIAQVAAEGHRALV 954
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ L V+E ++ GI + +DG T R+R + + F+ + + +I + AGG G
Sbjct: 955 FSQFTGFLGLVRERLAADGIEYAYLDGRT--RNRPARIQEFR-DGDAPVFLISLKAGGFG 1011
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
L + A V L+ +P+ QA DR HR GQ V +Y A DT ++
Sbjct: 1012 LTLTEADYVFLLDPWWNPAAEQQAVDRTHRIGQDKTVMVYRLIAADTIED 1061
>gi|242762396|ref|XP_002340369.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
[Talaromyces stipitatus ATCC 10500]
gi|218723565|gb|EED22982.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
[Talaromyces stipitatus ATCC 10500]
Length = 534
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 218/499 (43%), Gaps = 83/499 (16%)
Query: 203 PFQLEGVRF--GLRRG-GRCLIADEMGLGKTLQAIAIAACFISAGS-----ILVVCPAIL 254
P+QL+GV F LR+ ++ADEMGLGKTLQ ++ I LVV P +
Sbjct: 63 PYQLDGVSFLSWLRKNNAHGIVADEMGLGKTLQVLSFFQHIIDTEKDDDRPFLVVSPLSV 122
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-----VVVISY-TMLHRLRKSM 308
SW E+++W + A H G+ + R R +V+I+Y T++ + +
Sbjct: 123 LGSWMSEIKKWTDMKV-AQYH---GNTEKRQQIGRMVRNKEFDIVLITYETVVFDIFRVS 178
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK---VKRIVLLSGTPSLSRPYDIF 365
W ++ DE H ++ S + L +A K ++ ++L+GTP + + +
Sbjct: 179 RMAHWKSVVCDEGHRLKNSTKQ---------LSIAIKKLKTEQRLILTGTPIQNDLTETW 229
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+N L+P L + C + G++ F VR + +MIRR
Sbjct: 230 SMLNWLYPELFVNETSE-----CFRQAFSLTDGRVDPAFLHHVRR------FLEVIMIRR 278
Query: 426 LKQHLL--VQLPPKRRQIIRLLLKRSEI---VSAKAAVGVIN--DSEKDATND----KTP 474
+K+ +QLP K+ I + L +EI + G ++ DSE D + TP
Sbjct: 279 VKESAQADLQLPEKKEVI--MYLPLTEIQKHLYLDVLTGGVDHGDSEDDHKREMLVLATP 336
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAK---LSGFREWLSIHPVIAESD------------ 519
S + + +S G + L R+ + IH + E
Sbjct: 337 PSSPGTGNYNSHSTTLPVSNPTKGRSVTNILMDLRK-ICIHSLFVEGFEEIDDDTDIDVA 395
Query: 520 ----GAADI---------DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566
G++ +V K++IF+ L+ + ++ GI +R+DGNT
Sbjct: 396 NLMLGSSKFILLKRLLEQEVTKDRKKILIFSGFDYALNCCEALLAAMGISCLRLDGNTCY 455
Query: 567 RDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626
R+ +H F+ +E K+ I+ AGG G+ ++A+ VVFL++ +P + QAE RA+R
Sbjct: 456 SLRRYNIHRFRNESECKVFIMATRAGGEGITLTAAEVVVFLDMDWNPQVTAQAEARAYRL 515
Query: 627 GQTSAVNIYIFCAKDTTDE 645
GQT V IY C T +E
Sbjct: 516 GQTKPVTIYKLCTSGTVEE 534
>gi|429860233|gb|ELA34975.1| DNA repair protein rhp26 [Colletotrichum gloeosporioides Nara gc5]
Length = 1143
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 224/521 (42%), Gaps = 79/521 (15%)
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGK 229
W P+H D V + KLP + + +Q GV + +G +I DEMGLGK
Sbjct: 361 WFKPSPDH-PDHVFGNGL-KLPGDIHPSLFAYQKTGVHWLAELYEQGVGGIIGDEMGLGK 418
Query: 230 TLQAIAIAACFISAGS----ILVVCPAILRLSWAEELERWLPFCLPADIHLV-------- 277
T+QAIA+ A + ++VV PA + W E RW P + +H
Sbjct: 419 TVQAIAMVAALHYSKKLDKPVIVVVPATVMKQWVNEFHRWWPPLRVSILHSSGSGMMNQH 478
Query: 278 --------FGHRNNPV-------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESH 322
G N V + + V+V +Y L + +++ W I+DE H
Sbjct: 479 EDDSDLDDGGESTNRVAARRIVNRVVKHGHVLVTTYAGLQSYNEELLQHSWGYAILDEGH 538
Query: 323 HVRCSKRTSEPEEVKAVLDVAAK----VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378
+R A + VA K V R V+LSGTP + +++ + ++P LG
Sbjct: 539 KIRNP---------NAEITVACKHLNTVNR-VILSGTPIQNNLTELWSLFDFIFPMRLGT 588
Query: 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLLVQLP 435
F +T ++ QG G + + E+ LK+T+ +++RLK + LP
Sbjct: 589 L-VSF-RTQFELPIKQG--GYANATNLQVMTAEKCATTLKETISQYLLQRLKIDVASDLP 644
Query: 436 PKRRQIIRLLLKRSEIVS-----AKAAVGVINDSEKDATND-----KTPKDSDEHDDSGA 485
K Q++ L +S++ + + AVG I ++ A K D DD
Sbjct: 645 EKTEQVLFCKLTQSQLTAYTRFISSDAVGEIMTRKRKALYGIDILRKICNHPDLLDD--- 701
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
RL + + + G SG + ++ + + G +K ++F+ +L+
Sbjct: 702 --RLKRDAKYDWGDPAKSGKMQMVNELLPMWKRFG----------HKTLLFSQTKLMLNI 749
Query: 546 VQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+++FI G+ +VR+DG+T RQ+ + F + + ++ GG+G++ + A +
Sbjct: 750 LEKFIRRMDGVSYVRMDGDTPIEQRQALIDRFNHDPSIDVFLLTTRTGGLGINLTGATRI 809
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + +PS +QA +RA R GQT V IY T +E
Sbjct: 810 IIYDPDWNPSTDMQARERAWRLGQTKPVAIYRLMTSGTIEE 850
>gi|328724512|ref|XP_001948282.2| PREDICTED: hypothetical protein LOC100164870 [Acyrthosiphon pisum]
Length = 4192
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 127/539 (23%), Positives = 228/539 (42%), Gaps = 101/539 (18%)
Query: 158 LNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLL----DVILPFQLEGVR--- 210
+ V E++ ++ +W P + +D V KL KS + + +QLEG+
Sbjct: 1571 IEVFERIRYTPPKDQWKPKKKPSPNDWV------KLDKSPTYKSNNTLREYQLEGLNWLL 1624
Query: 211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-------GSILVVCPAILRLSWAEELE 263
F G C++ADEMGLGKT+Q++ FI A G LV+ P +W E E
Sbjct: 1625 FSWYNGRNCILADEMGLGKTIQSL----TFIHAVHEYGVRGPFLVIAPLSTIPNWQREFE 1680
Query: 264 RWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQD----------- 312
W D++++ H + R +V Y M +R K I +D
Sbjct: 1681 AW------TDLNVIV------YHGSSHSRNMVQQYEMYYRNEKGAIIKDISKFDVLITTF 1728
Query: 313 --------------WALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
W L ++DE+H R R + E L++ +V LLSGTP
Sbjct: 1729 ETIISDCMELRDIGWRLCVIDEAH--RLKNRNCKLLEGLRALNLEHRV----LLSGTPLQ 1782
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ ++F +N L P + DF + + +K+ +++L +LLK
Sbjct: 1783 NNVNELFSLLNFLEPTQFSSCE-DFLQEFGALKS--------------ETEVQKLQLLLK 1827
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDATNDKTP 474
+M+RRLK+ + + PK ++ + L + K G++ + K T+ P
Sbjct: 1828 -PMMLRRLKEDVEKSIAPKEETVVEVELTN---IQKKYYRGILEKNFSFLSKGTTSANVP 1883
Query: 475 KDSDEHDDSGACC-----RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID---- 525
+ + CC G + L+G + +I S ID
Sbjct: 1884 NLMNTMMELRKCCIHPYLLNGAEDQIQYDYRNLNGDDPDVYYKALIHSSGKMVLIDKLLP 1943
Query: 526 -VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEVK 583
+ ++++IF+ ++ LD +++++ + F R+DG RQ+A+ F + ++
Sbjct: 1944 KLKDNGHRVLIFSQMVRCLDIIEDYLVYRKYPFERLDGRIRGNLRQAAIDRFCKPDSDRF 2003
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P LQA+ R HR GQ V +Y ++T
Sbjct: 2004 VFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQQKMVKVYRLLCRNT 2062
>gi|299741616|ref|XP_001831930.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
gi|298404796|gb|EAU89829.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
Length = 1102
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 130/535 (24%), Positives = 240/535 (44%), Gaps = 60/535 (11%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P + + P+QL+G+ + + G ++ADEMGLGKTLQ I+ + I
Sbjct: 133 PSFINGTMRPYQLQGLNWMVSLHHNGLNGILADEMGLGKTLQTISFLSYLKHVRGITGPH 192
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL--TRF-PR---VVVISYTM 300
LVV P +WA E E+W P ++ L+ G + + TR P+ V + SY +
Sbjct: 193 LVVVPKSTLQNWAREFEKWTP---DFNVALLTGSKEERAEIIATRLLPQDFEVCITSYEI 249
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV---KRIVLLSGTPS 357
+ ++ + + +++DE+H ++ V ++L + + +L++GTP
Sbjct: 250 CLIEKGALKKFSFEYIVIDEAHRIK---------NVDSILSQIVRSFMSRGRLLITGTPL 300
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV-----KTVQGYQGQLFQDFSKGVRLEE 412
+ ++F +N + P + Y D+ K G + + +D SK V +E
Sbjct: 301 QNNLKELFALLNFICPEIF--------VNYADLDAFLHKDDSGAENE--EDKSKKV-VEA 349
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK 472
L+ +L+ ++RR+K + L PK+ I + + SE+ + + + + DA N
Sbjct: 350 LHKILR-PFLLRRVKSDVEKSLLPKKE--INIYVGLSEM--QRKWYRSVLEKDIDAVNGL 404
Query: 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VN 527
T K + +L K++ + + +I S +D +
Sbjct: 405 TGKKEGKTRLMNIVMQLRKVTCHPYLFDGAEPGPPYTTDEHLIQNSGKMVILDKLLKMMY 464
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
+ ++++IF+ +VLD ++++ +G + RIDG T DR +A+ + K I +
Sbjct: 465 QKGSRVLIFSQMSRVLDILEDYCLFRGYKYCRIDGGTAHEDRIAAIDEYNKPGSDKFIFL 524
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ ++A VV + +P LQA DRAHR GQT V +Y F + + +E
Sbjct: 525 LTTRAGGLGINLTTADIVVLYDSDWNPQADLQAMDRAHRIGQTKQVYVYRFITEGSVEER 584
Query: 647 HWQNLNKSLRCVSSAT-NGKYDALQEIAVEGVSYLEM----SDKTDRGSEDLTLD 696
+ + LR G+ + A LEM +DK SE + +D
Sbjct: 585 MLERAAQKLRLDQLVIQQGRAQQQAKSAANKEELLEMITHGADKIINSSEQMLVD 639
>gi|410619635|ref|ZP_11330529.1| helicase [Glaciecola polaris LMG 21857]
gi|410160767|dbj|GAC34667.1| helicase [Glaciecola polaris LMG 21857]
Length = 1435
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 218/476 (45%), Gaps = 60/476 (12%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
++P + + +QL G + R G CL AD+MGLGKTLQA+AI S G L
Sbjct: 959 QIPSTFQAQLRDYQLVGFDWASRLAHWGAGACL-ADDMGLGKTLQALAILLSRASHGPSL 1017
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPRVVVISYTM 300
V+ P + +W +E ++ P +I L F N + L F V+ISY +
Sbjct: 1018 VIAPTSVCFNWQQEALKFAP---TLNIKL-FADSTNTLQREVLLNELGPFD-CVIISYGL 1072
Query: 301 LHRLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP-- 356
L R + + W ++ DE+ ++ +KRT KA + + K I +GTP
Sbjct: 1073 LQRESELLKGVHWHSIVADEAQALKNPLAKRT------KAAYALKSDFKMIT--TGTPIE 1124
Query: 357 -SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
+L+ + +F IN PGLLG K + ++ +D + +
Sbjct: 1125 NNLTELWSLFRFIN---PGLLGNIKRFGERFSLPIENAN-------EDPLAARKASQALK 1174
Query: 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVIN--DSEKDAT 469
+ Q ++RR+K +L +LP + IR+ + E +A A+ I+ D + +A
Sbjct: 1175 TVIQPFILRRMKNQVLTELPSRTEINIRVEMSAQERDFYEALRLNAIDNISQGDQQANAG 1234
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
+ ++ ACC +L +A+ + I + ++
Sbjct: 1235 EQRIKMLAELVKLRQACCN------PKLVMAETT-------IPSAKLAALDELLEELKLN 1281
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
++K +IF+ + L +++ I KG + +DG+T + RQ +V++FQ E I +I +
Sbjct: 1282 NHKALIFSQFVGHLHLIKQHIEAKGFRYQYLDGSTPQKQRQQSVNAFQ-RGEGDIFLISL 1340
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ ++A V+ ++ +P++ QA DRAHR GQ V IY ++T +E
Sbjct: 1341 KAGGSGLNLTAADYVIHMDPWWNPAVEEQASDRAHRIGQLRPVTIYRLITQNTIEE 1396
>gi|160942559|ref|ZP_02089806.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
M21/2]
gi|158446143|gb|EDP23146.1| SNF2 family N-terminal domain protein [Faecalibacterium prausnitzii
M21/2]
Length = 1098
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 217/485 (44%), Gaps = 46/485 (9%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS--- 245
P SL + +Q +G R+ G GG ++AD+MGLGKT+Q ++ G
Sbjct: 632 PLSLQKTLRKYQRDGYRWLRTLDGYGMGG--ILADDMGLGKTVQVLSYLLAMKEGGQQLP 689
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+VCPA L L+W EE +++ P + HR V +V+ SY +L R
Sbjct: 690 SLIVCPASLVLNWQEECQKFTPQLQSVAMDGDAAHRAALVDGWAQADIVITSYDLLRRDE 749
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
K Q + I+DE+ ++ ++ KAV V ++V+ L+GTP +R +++
Sbjct: 750 KLYAGQSFYACILDEAQAIK----NHTTQKYKAVCRVNSRVR--FALTGTPVENRLGELW 803
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ L PG L K T+C ++ + QD + LN ++RR
Sbjct: 804 SIFSFLMPGYLPPYK-----TFC-----ARFEKPIVQDEDANA-VRRLNQF-TGPFILRR 851
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+K +L +LPPK + R+ L+ + AAV ++ EK + K D+
Sbjct: 852 MKSEVLRELPPKTENVRRVELETEQRKLYLAAV--VDAREKL----RAAKPEDKMTVFAV 905
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI--DVNPRSNKMIIFAHHLKVL 543
RL +I +A W A+ D ++ + +++++F+ +L
Sbjct: 906 LMRLREICCDPRLVAD-----NWTGSS---AKLDACLELVTEAVAGGHRILLFSQFTSML 957
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
+ + + + E G+ + G+T R V F E + +I + AGG GL+ ++A
Sbjct: 958 ELLAKRLDEAGVSHFTLQGSTPKPVRAEQVRRFN-QGEADVFLISLRAGGTGLNLTAADI 1016
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663
V+ + + + QA DRA+R GQ + V +Y A+DT +E + L ++ + ++
Sbjct: 1017 VIHYDPWWNLAAQNQATDRAYRIGQRNPVQVYRLIAQDTIEEKIVE-LQQAKQSLADTVT 1075
Query: 664 GKYDA 668
G D
Sbjct: 1076 GGADG 1080
>gi|365838121|ref|ZP_09379475.1| protein, SNF2 family [Hafnia alvei ATCC 51873]
gi|364560552|gb|EHM38484.1| protein, SNF2 family [Hafnia alvei ATCC 51873]
Length = 1085
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 131/513 (25%), Positives = 234/513 (45%), Gaps = 74/513 (14%)
Query: 163 KLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL-----------PKSLLDVILPFQLEGV-- 209
+L+ DTGRW + D + E+ +L P L + +Q +G+
Sbjct: 577 RLAALSDTGRW-----QFHGDTSIQELAQRLQDGPGLQLVPIPLGLQATLRSYQHQGLSW 631
Query: 210 -RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELER 264
+F + ++AD+MGLGKT+Q +A AG + L+V P L +W EE R
Sbjct: 632 MQFLRQHDISGVLADDMGLGKTVQTLAHILAEKEAGRLDRPALIVVPTTLVHNWREEAAR 691
Query: 265 WLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLHRLRKSMIEQDWALLIVD 319
+ P D++++ N P F ++ ++ +Y++L R +K + + D+ LLI+D
Sbjct: 692 FTP-----DLNVLV--LNGPQRKEHFDQIDQFDLILTTYSLLWRDQKVLTQHDYHLLILD 744
Query: 320 ESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA 379
E+ +V+ + + A+ D+ A+ + + L+GTP + +I+ + L PG LG
Sbjct: 745 EAQYVKNATTRA----ATALRDLNARHR--LCLTGTPLENHLGEIWSLFDFLLPGFLGSQ 798
Query: 380 KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
K + Q ++ + +D VR +L V + M+RR K + +LPPK
Sbjct: 799 K----------EFNQRWRVPIERD-GDNVR-RDLLVRRIRPFMLRRRKDDVATELPPKTT 846
Query: 440 QIIRLLLKRSEI-------VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+ + LK S+ + + V DS+ A + D+ CC +
Sbjct: 847 LLRTVELKGSQRDLYETVRTAMQEKVRTAIDSQGMARSHIIVLDA-LLKLRQVCCDPRLV 905
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ ++ + K S E L +G ++++F+ +LD + + + +
Sbjct: 906 NLEKAALVKESAKLELLLELLPEMIEEG----------RRILLFSQFTGMLDLISQALDK 955
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
GI +V + G+T DR + V FQ EV + +I + AGGVGL+ ++A V+ + +
Sbjct: 956 AGIAYVTLTGSTA--DRHAPVQRFQ-RGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWN 1012
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P+ QA DRAHR GQ V +Y A + +E
Sbjct: 1013 PAAENQATDRAHRMGQDKPVFVYKLIASGSIEE 1045
>gi|71033491|ref|XP_766387.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353344|gb|EAN34104.1| hypothetical protein TP01_0866 [Theileria parva]
Length = 1816
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 156/597 (26%), Positives = 260/597 (43%), Gaps = 107/597 (17%)
Query: 194 PKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSI 246
P+ L D +QL G+ + ++RG L+ADEMGLGKT+Q I++ F+ G
Sbjct: 796 PRKLRD----YQLTGLNWMVNRMKRGLSVLLADEMGLGKTVQTISLVGHFMYKEFLIGPY 851
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN-----NPVHLTRF----------- 290
L++ P +W E E WLP A+ +G+ LTR
Sbjct: 852 LIIVPQSTIDNWMREFEAWLP---QANAVCYYGNATAREMIRQRELTRIFVPGKGERYKC 908
Query: 291 -----PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC--SKRTSEPEEVKAVLDVA 343
++ S L LR+ W L++VDE+H ++ SKR E ++
Sbjct: 909 DVCITTPSIINSPADLEFLRRI----SWQLMVVDEAHQLKNKNSKRFVE------LMQFM 958
Query: 344 AKVKRIVLLSGTP---SLSRPYDIFHQIN-MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQ 399
A K +LLSGTP +L + + H IN ++P DF + Y +++ G+
Sbjct: 959 ADYK--LLLSGTPLHNNLEELWTLLHFINPQIYPYY-----EDFRRRYSEIENPAAI-GE 1010
Query: 400 LFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVG 459
+K +L L L + V+ RR+K+ + LP K +I+R+ L +I K +
Sbjct: 1011 -----NKQKQLLSLQHELHEFVL-RRVKKDVEKSLPNKVERILRVELSPMQIDWYKNILA 1064
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
+ E+ A N + S ++ C L K+ + + WL +I S
Sbjct: 1065 --RNYEELARNSGGSRSSLQN----ICMELKKVCNHPFLCYEPEDRQVWL--QGLIYGSG 1116
Query: 520 GAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574
+D + + ++++IF+ +++L+ + E+++ +G R+DG R+ A+
Sbjct: 1117 KICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKAMD 1176
Query: 575 SFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F ++ AGG+G++ +SA V+ + +P LQAE RAHR GQT V
Sbjct: 1177 HFNDPQSDDFCFLLSTKAGGLGINLTSADTVIIYDSDWNPQNDLQAEARAHRIGQTKTVQ 1236
Query: 634 IYIFCAKDTTDESHW--------------QNLNKSLRCVSSATNGKY----DALQEIAVE 675
IY KD+ +++ Q LNK V +GK + L +I
Sbjct: 1237 IYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRGDAVMFNDDGKSGFSREELAKILKF 1296
Query: 676 GVSYL--EMSDKTDRGSE-----DLTLDQVASSDQFQELMKVPESSEASDFRAINTN 725
G S L + +T++ S D+ LD+V Q EL K +S A+D + TN
Sbjct: 1297 GASKLWATANPQTNKSSSTDEKLDIDLDKVL---QEAELTKENDSDLAADLLSSYTN 1350
>gi|353334501|gb|AEQ93540.1| superfamily II DNA/RNA helicase-like protein [Pseudomonas
aeruginosa]
Length = 658
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPAGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P +V +++P + ++++Y L + +A++++D
Sbjct: 309 REIQEVYPSA------IVTIQQDDPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPNLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDLLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEGTIDEQLWQLLN 629
>gi|317491226|ref|ZP_07949662.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920773|gb|EFV42096.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 1085
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 131/513 (25%), Positives = 234/513 (45%), Gaps = 74/513 (14%)
Query: 163 KLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL-----------PKSLLDVILPFQLEGV-- 209
+L+ DTGRW + D + E+ +L P L + +Q +G+
Sbjct: 577 RLAALSDTGRW-----QFHGDTSIQELAQRLQDGPGLQLVPIPLGLQATLRSYQHQGLSW 631
Query: 210 -RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELER 264
+F + ++AD+MGLGKT+Q +A AG + L+V P L +W EE R
Sbjct: 632 MQFLRQHDISGVLADDMGLGKTVQTLAHILAEKEAGRLDRPALIVVPTTLVHNWREEAAR 691
Query: 265 WLPFCLPADIHLVFGHRNNPVHLTRFPRV-----VVISYTMLHRLRKSMIEQDWALLIVD 319
+ P D++++ N P F ++ ++ +Y++L R +K + + D+ LLI+D
Sbjct: 692 FTP-----DLNVLV--LNGPQRKEHFDQIDQFDLILTTYSLLWRDQKVLTQHDYHLLILD 744
Query: 320 ESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKA 379
E+ +V+ + + A+ D+ A+ + + L+GTP + +I+ + L PG LG
Sbjct: 745 EAQYVKNATTRA----ATALRDLNARHR--LCLTGTPLENHLGEIWSLFDFLLPGFLGSQ 798
Query: 380 KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
K + Q ++ + +D VR +L V + M+RR K + +LPPK
Sbjct: 799 K----------EFNQRWRVPIERD-GDNVR-RDLLVRRIRPFMLRRRKDDVATELPPKTT 846
Query: 440 QIIRLLLKRSEI-------VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
+ + LK S+ + + V DS+ A + D+ CC +
Sbjct: 847 LLRTVELKGSQRDLYETVRTAMQEKVRTAIDSQGMARSHIIVLDA-LLKLRQVCCDPRLV 905
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552
+ ++ + K S E L +G ++++F+ +LD + + + +
Sbjct: 906 NLEKAALVKESAKLELLLELLPEMIEEG----------RRILLFSQFTGMLDLISQALDK 955
Query: 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612
GI +V + G+T DR + V FQ EV + +I + AGGVGL+ ++A V+ + +
Sbjct: 956 AGIAYVTLTGSTA--DRHAPVQRFQ-RGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWN 1012
Query: 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
P+ QA DRAHR GQ V +Y A + +E
Sbjct: 1013 PAAENQATDRAHRMGQDKPVFVYKLIAAGSIEE 1045
>gi|182414357|ref|YP_001819423.1| non-specific serine/threonine protein kinase [Opitutus terrae
PB90-1]
gi|177841571|gb|ACB75823.1| Non-specific serine/threonine protein kinase [Opitutus terrae
PB90-1]
Length = 922
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 124/470 (26%), Positives = 204/470 (43%), Gaps = 65/470 (13%)
Query: 194 PKSLLDVILPFQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVV 249
P L +V+ P+Q GV + G L+ADEMGLGKTLQ I + A A LVV
Sbjct: 445 PPELPEVLRPYQRRGVEWLAHLCNVGCHGLLADEMGLGKTLQVITLLATRPEADRPSLVV 504
Query: 250 CPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
CPA + W EE+ R+ P L D V N+ + P + + SYT L + R+ +
Sbjct: 505 CPASVVPVWREEIARFQP-DLAVD---VLKTGNDFTKPSNGPVLWLASYTQLRKHRELLA 560
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
++ +I+DE ++ P+ A + + ++L+GTP +R D++
Sbjct: 561 AHEFGYVILDEGQFIK------NPDAKVTQACFAIRARHRIVLTGTPLENRQLDLWSIFR 614
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
L PGLLG + ++ L D + LE L V L ++ RR K+
Sbjct: 615 FLLPGLLG--------------SRSSFESALLVD--RAGTLERLRVQLAPFIL-RRTKKE 657
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
+ +LP K + LL +++ A+ A ++ DD GA R
Sbjct: 658 VAQELPEKIE--MDLLCPLTDVQRAEYARICTEGLQRLG------------DDVGAAMRE 703
Query: 490 GKISYQELGIAKLSGFRE---------WLSIHPVIAESDGAADI-----DVNPRSNKMII 535
+ +A L+ R+ WL +A+S A + +V +K++I
Sbjct: 704 KSFGF----LALLTRLRQTCCDPDMLPWLK--SPLADSGKIALLMEKLAEVVSSGHKVVI 757
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG 595
F+ + LD V+ ++E+ + + DR V FQ + + ++ + A G G
Sbjct: 758 FSQFVMFLDRVRAALNERFPELPHFELTGMTLDRLKPVQQFQNAPGAAVMLVSLKAAGTG 817
Query: 596 LDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ +A V L+ +P++ QA DR HR GQT+ V +Y T +E
Sbjct: 818 ITLHAADYVFLLDPWWNPAVEAQAVDRVHRIGQTNTVFVYRMVTAGTIEE 867
>gi|391229065|ref|ZP_10265271.1| DNA/RNA helicase, superfamily II, SNF2 family [Opitutaceae
bacterium TAV1]
gi|391218726|gb|EIP97146.1| DNA/RNA helicase, superfamily II, SNF2 family [Opitutaceae
bacterium TAV1]
Length = 918
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 199/466 (42%), Gaps = 66/466 (14%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGS--ILVVCPAIL 254
V+ P+Q GV + +G L+ADEMGLGKTLQ IA+ +A + L+VCPA +
Sbjct: 449 VLRPYQRRGVEWLHHLCDKGCHGLLADEMGLGKTLQVIALLMTRPAANNRPALIVCPASV 508
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W EE+ER F + ++ + V T PRV V S+T L + R + E ++
Sbjct: 509 VPVWCEEIER---FWSGTRVEVLKNGNDFSVIHTEPPRVWVASFTQLRKHRALLDEYEFG 565
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++DE ++ P+ A + ++L+GTP +R D++ L PG
Sbjct: 566 YAVLDEGQFIK------NPDAKVTQTCFAIRATHRIVLTGTPLENRQLDLWSIFRYLLPG 619
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
LLG T ++ L D + ++ L L ++ RR K + +L
Sbjct: 620 LLG--------------TRTAFEAALLADHAG--TMKRLRAQLAPFIL-RRTKTEVAKEL 662
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
PPK + L+ +E+ ++ A ++ DD GA R
Sbjct: 663 PPKVE--MELICPLTEVQRSEYAKICAEGLQRLG------------DDVGAAMREKSFGL 708
Query: 495 QELGIAKLSGFRE---------WLSIHPVIAES------DGAADIDVNPRSNKMIIFAHH 539
+A L+ R+ W+ P+ + A++ N +K++IF+
Sbjct: 709 ----LALLTRLRQICCDPDMLPWIKDAPLTDSGKITLLVERLAEVIAN--GHKVVIFSQF 762
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +LD V+ +++ R + + DR V FQ + ++ + A G G+
Sbjct: 763 VMLLDRVKIALAQAFPDLPRYELTGMTLDRLKPVQGFQGAEGAAAMLVSLKAAGTGITLH 822
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
SA V L+ +P++ QA DR HR GQ S V +Y T +E
Sbjct: 823 SADYVFLLDPWWNPAVEAQAVDRVHRIGQKSTVFVYRMVTAGTIEE 868
>gi|373851053|ref|ZP_09593854.1| SNF2-related protein [Opitutaceae bacterium TAV5]
gi|372477218|gb|EHP37227.1| SNF2-related protein [Opitutaceae bacterium TAV5]
Length = 915
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 118/464 (25%), Positives = 197/464 (42%), Gaps = 62/464 (13%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGS--ILVVCPAIL 254
V+ P+Q GV + +G L+ADEMGLGKTLQ IA+ +A + L+VCPA +
Sbjct: 446 VLRPYQRRGVEWLHHLCDKGCHGLLADEMGLGKTLQVIALLMTRPAANNRPALIVCPASV 505
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314
W EE+ER F + ++ + V T PRV V S+T L + R + E ++
Sbjct: 506 VPVWCEEIER---FWSGTRVEVLKNGNDFSVIHTEPPRVWVASFTQLRKHRALLDEYEFG 562
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++DE ++ P+ A + ++L+GTP +R D++ L PG
Sbjct: 563 YAVLDEGQFIK------NPDAKVTQTCFAIRATHRIVLTGTPLENRQLDLWSIFRYLLPG 616
Query: 375 LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434
LLG T ++ L D + ++ L L ++ RR K + +L
Sbjct: 617 LLG--------------TRTAFEAALLADHAG--TMKRLRAQLAPFIL-RRTKTEVAKEL 659
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
PPK + L+ +E+ ++ A ++ DD GA R
Sbjct: 660 PPKVE--MELICPLTEVQRSEYAKICAEGLQRLG------------DDVGAAMREKSFGL 705
Query: 495 QELGIAKLSGFRE---------WLSIHPVIAESDGAADI----DVNPRSNKMIIFAHHLK 541
+A L+ R+ W+ P+ + +V +K++IF+ +
Sbjct: 706 ----LALLTRLRQICCDPDMLPWIKDAPLTDSGKITLLVERLAEVIANGHKVVIFSQFVM 761
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
+LD V+ +++ R + + DR V FQ + ++ + A G G+ SA
Sbjct: 762 LLDRVKIALAQAFPDLPRYELTGMTLDRLKPVQGFQGAEGAAAMLVSLKAAGTGITLHSA 821
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V L+ +P++ QA DR HR GQ S V +Y T +E
Sbjct: 822 DYVFLLDPWWNPAVEAQAVDRVHRIGQKSTVFVYRMVTAGTIEE 865
>gi|134114696|ref|XP_774056.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256686|gb|EAL19409.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1514
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 210/469 (44%), Gaps = 60/469 (12%)
Query: 203 PFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
PFQL G+ + +G ++ADEMGLGKT+Q+++ + G LVV P
Sbjct: 454 PFQLTGLNWLAYVWSKGENGILADEMGLGKTVQSVSFLSYLFHVQHQYGPFLVVVPLSTI 513
Query: 256 LSWAEELERWLP----FCLPADIH---LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W + +RW P C ++ P+ +F V++ +Y + + R+ +
Sbjct: 514 SAWQAQFKRWAPELNVICYMGSARSRDVIRQFEFGPLKNLKF-NVLLTTYEFILKDRQDL 572
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ W +L VDE+H R S+ E A+K+ L++GTP + ++ +
Sbjct: 573 QQIKWQVLAVDEAH--RLKNHESQLYEALKSFWSASKL----LITGTPLQNNVKELLALM 626
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ L P K+ A + D+ QG +D + T+M+RRLK+
Sbjct: 627 HFLMP-----EKFQLANDF-DLNDASEDQGAKIKDLHDKL----------TTLMLRRLKK 670
Query: 429 HLLVQLPPKRRQIIRLLLKRSE------IVSAKAAV----GVINDSEKDATNDKTPKDSD 478
++ +LP K +I+R+ + + I++ AV G S + + +
Sbjct: 671 DVVKELPTKSERILRVEMSAMQTHYYKNILTKNFAVLSKGGTQQVSLMNVAMELKKASNH 730
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ GA R + G+ SG L + +SDG ++++IF+
Sbjct: 731 PYLFEGAEDRSKPANEILRGLVMNSGKMVCLDMLLSRLKSDG----------HRVLIFSQ 780
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIA-IIGITAGGVGL 596
+++LD + ++++ +G R+DG T+P D R+ ++ F A ++ AGG+G+
Sbjct: 781 MVRLLDIISDYMTARGYVHQRLDG-TVPSDVRKKSIEHFNAPGSPDFAFLLSTRAGGLGI 839
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ +A V+ + +P LQA RAHR GQ V+I+ +K T +E
Sbjct: 840 NLETADTVIIFDSDYNPQNDLQAMARAHRIGQQRHVSIFRLVSKGTIEE 888
>gi|340505166|gb|EGR31523.1| hypothetical protein IMG5_107420 [Ichthyophthirius multifiliis]
Length = 600
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 122/215 (56%), Gaps = 11/215 (5%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MG+GKT+QA+ +A C +L++ P+ LRL+W E+ W+ F +I L+ + +
Sbjct: 1 MGVGKTIQALGLATCLQQKWPLLIITPSSLRLNWKLEIMEWIKFIKECNI-LIIDKQTSK 59
Query: 285 VHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344
+ ++V+ISY + + + + + + I DE+H++ + + + + ++ +
Sbjct: 60 FYEENI-KIVIISYELCKQYNNYL--KTFKIAIADEAHYL----KNYQAQRSQLLIPILQ 112
Query: 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404
+ I+LL+GTP+L++P ++++ ++++ P + K F + YCD K Y+ ++ D+
Sbjct: 113 NMHHIILLTGTPALAKPKELYNLLSIIRPDIFKFPK-SFLERYCDPKPNPFYENKI--DY 169
Query: 405 SKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
+EL+ +LK MIRRLKQ +L +LP KRR
Sbjct: 170 EGASNCDELHFILKNNFMIRRLKQDVLTELPLKRR 204
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 612 SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665
+P++M QAEDRAHR GQ V + ++T D+ + LN+ V S +G+
Sbjct: 219 TPAIMQQAEDRAHRVGQIGCVECFYLIGENTLDQYIYDKLNRKSNIVQSIIDGQ 272
>gi|421163081|ref|ZP_15621838.1| SNF2 family helicase [Pseudomonas aeruginosa ATCC 25324]
gi|404531018|gb|EKA40985.1| SNF2 family helicase [Pseudomonas aeruginosa ATCC 25324]
Length = 657
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 204/455 (44%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPAGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPLVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 629
>gi|88319960|ref|NP_001034645.1| DNA repair and recombination protein RAD54B isoform 1 [Mus
musculus]
gi|51316246|sp|Q6PFE3.1|RA54B_MOUSE RecName: Full=DNA repair and recombination protein RAD54B; AltName:
Full=RAD54 homolog B
gi|34785459|gb|AAH57604.1| RIKEN cDNA E130016E03 gene [Mus musculus]
Length = 886
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 135/553 (24%), Positives = 225/553 (40%), Gaps = 94/553 (16%)
Query: 172 RWNPCRPEH-----------LSDEVVDEMIGKLPKSLLDVIL---------PFQLEGVRF 211
RWN CRP H DE M + ++DV++ P Q +G+ F
Sbjct: 225 RWNDCRPRHNPCTPNALVMPRPDENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIF 284
Query: 212 ------GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAG---------SILVVCPAIL 254
G+R G+C ++ADEMGLGKTLQ I++ G L+V P L
Sbjct: 285 LYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSL 344
Query: 255 RLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W +E ++WL F + D H+ + F V++ISY ML R +
Sbjct: 345 VNNWRKEFQKWLGSERIKIFTVDQD------HKVEEFINSTFHSVLIISYEMLLRSLDQI 398
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLSGTPSLSRPYDIFHQ 367
+ LLI DE H ++ S +K +++ ++ V+L+GTP + + F
Sbjct: 399 KTIPFGLLICDEGHRLKNSS-------IKTTTALSSLSCEKTVILTGTPVQNDLQEFFAL 451
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
++ + PG+LG + K Y + + ++ G R L ++RR +
Sbjct: 452 VDFVNPGILGSLS-SYRKIYEEPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQ 510
Query: 428 QHLLVQLPPK---------------------RRQIIRLLLKRSEIVSAKAAVGVINDSEK 466
+ + LPPK R Q +R L+ ++ A + I +K
Sbjct: 511 EVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSVRFCLQ--GLLENSAHLICIGALKK 568
Query: 467 ---------DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE 517
+ K S E ++ C+ G +S G L F E S +
Sbjct: 569 LCNHPCLLFSSVKGKEFSSSCEENEERNLCQ-GLLSVFPAGYNPLQ-FSEEESGKLQVLV 626
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
A ++ P + K+I+ +++ + L+ ++E G R+DG T RQ V SF
Sbjct: 627 KLLAVIHELRP-TEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFN 685
Query: 578 LSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
I ++ AGGVGL+ +++ ++ +P+ +QA R R GQ V+IY
Sbjct: 686 SKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYR 745
Query: 637 FCAKDTTDESHWQ 649
T +E +Q
Sbjct: 746 LLTTGTIEEKIYQ 758
>gi|50311185|ref|XP_455616.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644752|emb|CAG98324.1| KLLA0F11814p [Kluyveromyces lactis]
Length = 931
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 118/482 (24%), Positives = 207/482 (42%), Gaps = 77/482 (15%)
Query: 219 CLIADEMGLGKTLQAIAIAACFIS---------------AGSI---LVVCPAILRLSWAE 260
CL+ADEMGLGKTL I + + AG I L+VCP L +W +
Sbjct: 316 CLLADEMGLGKTLMTITLIWTLLKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKK 375
Query: 261 ELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPR---VVVISYTMLHRLRKSMIE 310
E ++WLP L RN+P + PR V+++ Y L ++ +
Sbjct: 376 EFKKWLPMNRIG--VLTLHSRNSPTEDKAQVRSFLKVPRTYQVLIVGYEKLLSIKDELQN 433
Query: 311 Q--DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ + L+I DE H R + S+ +V LD+ K+ +LSGTP + + + I
Sbjct: 434 EKRNLDLVICDEGH--RLKNKDSKILKVLQSLDIEKKI----VLSGTPIQNDLEEFYTII 487
Query: 369 NMLWPGLLG---KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ + PG+LG + K ++ + V Q Q +G+ + + + + ++RR
Sbjct: 488 DFINPGILGSFGRFKREYILPIARSRDVNAKQNQTL--VEQGLLRSDQLIEITKRFILRR 545
Query: 426 LKQHLLVQLPPKRRQII------------RLLLKRSEI----VSAKAAVGVINDSEKDAT 469
+ L LPP+ II +L ++ ++ +++G+I +K
Sbjct: 546 TNEILQQYLPPRTDLIIFCKPTAEQVEAFHKILTEGQLNFSNMTFNSSLGLITLFKKICN 605
Query: 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG-FREWLSI-HPVIAESDGAADIDVN 527
+ + K +++ RL ++ SG R LS+ H + ++D
Sbjct: 606 STRLIKTDPYYEE-----RLSQVQTSSTSGKFTSGKLRILLSLLHELKTKTD-------- 652
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
K+++ +++ + LD ++ S +G R+DG+T + R V SF + + ++
Sbjct: 653 ---EKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNNDPSIFVFLL 709
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESH 647
+GGVGL+ A +V + +PS+ LQA R HR GQ IY DE
Sbjct: 710 SAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKI 769
Query: 648 WQ 649
Q
Sbjct: 770 LQ 771
>gi|32473602|ref|NP_866596.1| SNF2 family helicase [Rhodopirellula baltica SH 1]
gi|32398282|emb|CAD78377.1| helicase, Snf2 family [Rhodopirellula baltica SH 1]
Length = 914
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 204/454 (44%), Gaps = 65/454 (14%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA---ACFISAGSILVVCPAILRLS 257
+LP+QL+G+ F GR ++AD+MGLGKT+Q I +A A +LVVCPA L+
Sbjct: 346 LLPYQLDGIAFAAG-AGRAILADDMGLGKTIQGIGVAELLAKLSDISRVLVVCPASLKSQ 404
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALL 316
W +E+ R+ +V G + I +Y + R ++ W L+
Sbjct: 405 WRDEIARF----SGRSSQIVLGKGEERIEQYESDTFFTICNYEQVLRDLTAVENVSWDLI 460
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE + + E + + + + + ++LSGTP +R ++F + LL
Sbjct: 461 ILDEGQRI----KNWESKTSNVIRQLESPFR--LVLSGTPLENRLGELFTVTRFIDDDLL 514
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQL 434
G A Y F +Q + D K + +L+VL ++ V++RR + + QL
Sbjct: 515 GPA-YQFF-----------HQHHVVDDRGKTLGYRQLDVLREKMRPVLLRRTRAEVAKQL 562
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS---GACCRLGK 491
P + +IIR A A ++D+ K D C + +
Sbjct: 563 PDRTDEIIR--------CEATAEQKEVHDANMKVVAQIAAKKFMTEMDRLRMQKCLLMAR 614
Query: 492 ISYQELGI---------AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
++ + +KL E L +IA+ + K+++F+ ++
Sbjct: 615 MACDSTYLLDQEADEYSSKLERLGELL--EGLIADP-----------TRKIVLFSEWRRM 661
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSA 601
L V+ + + G +VR+DG + R + V FQ N+ + +I +T AG GL+ +A
Sbjct: 662 LTRVENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQ--NDPECRVINMTNAGSTGLNLQAA 719
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
V+ ++LP +P+++ Q RA+R GQ + V++Y
Sbjct: 720 NTVINVDLPWNPAVLEQRIARAYRMGQENPVHVY 753
>gi|58271342|ref|XP_572827.1| transcription regulator [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229086|gb|AAW45520.1| transcription regulator, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1519
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 210/469 (44%), Gaps = 60/469 (12%)
Query: 203 PFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILR 255
PFQL G+ + +G ++ADEMGLGKT+Q+++ + G LVV P
Sbjct: 459 PFQLTGLNWLAYVWSKGENGILADEMGLGKTVQSVSFLSYLFHVQHQYGPFLVVVPLSTI 518
Query: 256 LSWAEELERWLP----FCLPADIH---LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W + +RW P C ++ P+ +F V++ +Y + + R+ +
Sbjct: 519 SAWQAQFKRWAPELNVICYMGSARSRDVIRQFEFGPLKNLKF-NVLLTTYEFILKDRQDL 577
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ W +L VDE+H R S+ E A+K+ L++GTP + ++ +
Sbjct: 578 QQIKWQVLAVDEAH--RLKNHESQLYEALKSFWSASKL----LITGTPLQNNVKELLALM 631
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+ L P K+ A + D+ QG +D + T+M+RRLK+
Sbjct: 632 HFLMP-----EKFQLANDF-DLNDASEDQGAKIKDLHDKL----------TTLMLRRLKK 675
Query: 429 HLLVQLPPKRRQIIRLLLKRSE------IVSAKAAV----GVINDSEKDATNDKTPKDSD 478
++ +LP K +I+R+ + + I++ AV G S + + +
Sbjct: 676 DVVKELPTKSERILRVEMSAMQTHYYKNILTKNFAVLSKGGTQQVSLMNVAMELKKASNH 735
Query: 479 EHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
+ GA R + G+ SG L + +SDG ++++IF+
Sbjct: 736 PYLFEGAEDRSKPANEILRGLVMNSGKMVCLDMLLSRLKSDG----------HRVLIFSQ 785
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIA-IIGITAGGVGL 596
+++LD + ++++ +G R+DG T+P D R+ ++ F A ++ AGG+G+
Sbjct: 786 MVRLLDIISDYMTARGYVHQRLDG-TVPSDVRKKSIEHFNAPGSPDFAFLLSTRAGGLGI 844
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ +A V+ + +P LQA RAHR GQ V+I+ +K T +E
Sbjct: 845 NLETADTVIIFDSDYNPQNDLQAMARAHRIGQQRHVSIFRLVSKGTIEE 893
>gi|148673695|gb|EDL05642.1| mCG142038, isoform CRA_b [Mus musculus]
Length = 886
Score = 116 bits (290), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 135/553 (24%), Positives = 225/553 (40%), Gaps = 94/553 (16%)
Query: 172 RWNPCRPEH-----------LSDEVVDEMIGKLPKSLLDVIL---------PFQLEGVRF 211
RWN CRP H DE M + ++DV++ P Q +G+ F
Sbjct: 225 RWNDCRPRHNPCTPNALVMPRPDENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIF 284
Query: 212 ------GLRRGGRC--LIADEMGLGKTLQAIAIAACFISAG---------SILVVCPAIL 254
G+R G+C ++ADEMGLGKTLQ I++ G L+V P L
Sbjct: 285 LYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSL 344
Query: 255 RLSWAEELERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
+W +E ++WL F + D H+ + F V++ISY ML R +
Sbjct: 345 VDNWRKEFQKWLGSERIKIFTVDQD------HKVEEFINSTFHSVLIISYEMLLRSLDQI 398
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLSGTPSLSRPYDIFHQ 367
+ LLI DE H ++ S +K +++ ++ V+L+GTP + + F
Sbjct: 399 KTIPFGLLICDEGHRLKNSS-------IKTTTALSSLSCEKTVILTGTPVQNDLQEFFAL 451
Query: 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427
++ + PG+LG + K Y + + ++ G R L ++RR +
Sbjct: 452 VDFVNPGILGSLS-SYRKIYEEPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQ 510
Query: 428 QHLLVQLPPK---------------------RRQIIRLLLKRSEIVSAKAAVGVINDSEK 466
+ + LPPK R Q +R L+ ++ A + I +K
Sbjct: 511 EVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSVRFCLQ--GLLENSAHLICIGALKK 568
Query: 467 ---------DATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE 517
+ K S E ++ C+ G +S G L F E S +
Sbjct: 569 LCNHPCLLFSSVKGKEFSSSCEENEERNLCQ-GLLSVFPAGYNPLQ-FSEEESGKLQVLV 626
Query: 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577
A ++ P + K+I+ +++ + L+ ++E G R+DG T RQ V SF
Sbjct: 627 KLLAVIHELRP-TEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFN 685
Query: 578 LSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
I ++ AGGVGL+ +++ ++ +P+ +QA R R GQ V+IY
Sbjct: 686 SKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYR 745
Query: 637 FCAKDTTDESHWQ 649
T +E +Q
Sbjct: 746 LLTTGTIEEKIYQ 758
>gi|421613310|ref|ZP_16054396.1| helicase, Snf2 family protein [Rhodopirellula baltica SH28]
gi|408495904|gb|EKK00477.1| helicase, Snf2 family protein [Rhodopirellula baltica SH28]
Length = 914
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/446 (26%), Positives = 206/446 (46%), Gaps = 49/446 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA---ACFISAGSILVVCPAILRLS 257
+LP+QL+G+ F GR ++AD+MGLGKT+Q I +A A +LVVCPA L+
Sbjct: 346 LLPYQLDGIAFAAG-AGRAILADDMGLGKTIQGIGVAELLAKLSDISRVLVVCPASLKSQ 404
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALL 316
W +E+ R+ +V G + I +Y + R ++ W L+
Sbjct: 405 WRDEITRF----SGRSSQIVLGKGEERIEQYESDTFFTICNYEQVLRDLTAVENVSWDLI 460
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE + + E + + + + + ++LSGTP +R ++F + LL
Sbjct: 461 ILDEGQRI----KNWESKTSNVIRQLESPFR--LVLSGTPLENRLGELFTVTRFIDDDLL 514
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQL 434
G A Y F +Q + D K + +L+VL ++ V++RR + + QL
Sbjct: 515 GPA-YQFF-----------HQHHVVDDRGKTLGYRQLDVLREKMRPVLLRRTRAEVAKQL 562
Query: 435 PPKRRQIIR--LLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
P + +IIR ++ E+ A V ++K T + + C +
Sbjct: 563 PDRTDEIIRCEATAEQKEVHDANMKVVAQIAAKKFMTEMDRLRMQKCLLMARMACDSTYL 622
Query: 493 SYQELG--IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
QE +KL E L +IA+ + K+++F+ ++L V+ +
Sbjct: 623 LDQEADEYSSKLERLGELL--EGLIADP-----------TRKIVLFSEWRRMLTRVENRL 669
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLEL 609
+ G +VR+DG + R + V FQ N+ + +I +T AG GL+ +A V+ ++L
Sbjct: 670 DQIGCDYVRLDGQVPQKKRAAIVSRFQ--NDPECRVINMTNAGSTGLNLQAANTVINVDL 727
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIY 635
P +P+++ Q RA+R GQ + V++Y
Sbjct: 728 PWNPAVLEQRIARAYRMGQENPVHVY 753
>gi|315656771|ref|ZP_07909658.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492726|gb|EFU82330.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 988
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 217/515 (42%), Gaps = 95/515 (18%)
Query: 170 TGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR---GGRCLIADEMG 226
+G W EH +++VD P +Q +G + + R G ++AD+MG
Sbjct: 491 SGDW-----EHAVNKLVDPPEVSTPALARGTWRGYQEDGFHWMMARATAGLGGILADDMG 545
Query: 227 LGKTLQAIAIAAC---------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV 277
LGKT+Q +A+ A +AG++ V+ PA L +W E+ RW P D+HL
Sbjct: 546 LGKTMQMLAVIAGQKQQLMDSPANAAGAVFVIVPASLMGTWEEQASRWFP-----DLHLY 600
Query: 278 FGHRNNPVHLTRFPRV---------VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
+ + RV V+ +YT+ Q ++ L+ DE+ V+
Sbjct: 601 AQKTSVGKVAADWERVAREVKQADLVLTTYTLARMDIDFWQTQSFSGLVFDEAQFVKNPS 660
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
+ V+ + K L+GTP + D++ +++ P +L F + +
Sbjct: 661 TATHKALVRL------RAKWAFALTGTPIENTATDLWSIMSLTVPTVLPSLSV-FTRRFA 713
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR 448
+G+ + S V ++RR K+ + +LP K QI+ + L+
Sbjct: 714 --AEALSDRGEAAAELSDRV----------APFLLRRTKESVAQELPEKIEQIVSIDLEP 761
Query: 449 SE-------IVSAKAAVGVINDSEKDATNDKTPK----------DSDEHDDSGACCRLGK 491
++ + +A+A V N + T D H+D K
Sbjct: 762 AQRTWYAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGA------K 815
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS-NKMIIFAHHLKVLDGVQEFI 550
++Y + L G R+ D ++NPR ++ ++F+ L ++E +
Sbjct: 816 VTYL---LQTLEGLRD---------------DSNLNPRQRHQALVFSQFTSFLAILRERL 857
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+ GI + +DG + RDRQ V FQ + EV + +I + AGG GL+ + A V +
Sbjct: 858 DQAGIDYAYLDGTSRDRDRQ--VARFQ-NGEVDVFLISLKAGGFGLNLTQADYVFLTDPW 914
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P+ QA DRAHR GQ VN+Y A DT ++
Sbjct: 915 WNPAAEAQAVDRAHRLGQKRFVNVYRLVATDTIEQ 949
>gi|301783501|ref|XP_002927161.1| PREDICTED: DNA excision repair protein ERCC-6-like [Ailuropoda
melanoleuca]
Length = 1481
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 117/522 (22%), Positives = 210/522 (40%), Gaps = 99/522 (18%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD D+ K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 481 SDAEFDDF--KMPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 536
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRN 282
A F G ++VCP + W +E W P A +H +
Sbjct: 537 LAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQ 596
Query: 283 NPVHLTR----FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
L R +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 597 KKEKLIRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR---------NPNA 647
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 648 AVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGG 706
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII-------- 442
Y + +L+ T+ ++RR+K + + LP K Q++
Sbjct: 707 YSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQ 763
Query: 443 --------------RLLLKRSEIVSAKAAV-GVINDSEKDATNDKTPKDSD----EHDDS 483
R+L +I S A+ + N + + K PKD E D
Sbjct: 764 HRVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHPDLFSGGPKNPKDIPDGELEEDQF 823
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
G R GK+ I S + W + + ++++F+ ++L
Sbjct: 824 GYWKRSGKM------IVVESLLKIW------------------HKQGQRVLLFSQSRQML 859
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
D ++ F+ + ++++DG T RQ + + + + ++ GG+G++ + A
Sbjct: 860 DILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLTGANR 919
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V+ + +PS QA +RA R GQ V +Y T +E
Sbjct: 920 VIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 961
>gi|373849791|ref|ZP_09592592.1| SNF2-related protein [Opitutaceae bacterium TAV5]
gi|372475956|gb|EHP35965.1| SNF2-related protein [Opitutaceae bacterium TAV5]
Length = 843
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 201/467 (43%), Gaps = 86/467 (18%)
Query: 220 LIADEMGLGKTLQAIAIAACFISAGS-----------------ILVVCPAILRLSWAEEL 262
++ADEMGLGKT QA+A+ + + G LVVCPA L +W E
Sbjct: 385 ILADEMGLGKTAQALALLSALHAGGKPEQPAAAGRRSPALPLLSLVVCPASLVENWRREA 444
Query: 263 ERWLP----FCLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALL 316
R+ P F L F NN + VVV SY L R + + A+L
Sbjct: 445 ARFAPQLRVFVHHGASRLPFPAANNTGAAAVASAFDVVVTSYGTLARDAERFADMPLAVL 504
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
+ DE+ HV+ ++RT +++ LD A+ LL+GTP + D+ +L PG L
Sbjct: 505 VADEAQHVK-NRRTQNARALRS-LDARARF----LLTGTPIENSLDDLRALFEILLPGFL 558
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV--MIRRLKQHLLVQL 434
+ G++ + F + +R KQT ++RR KQ + +L
Sbjct: 559 EQKP----------SAAAGFRPEERAWFDERLR--------KQTAPYILRRTKQAVAPEL 600
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG---------- 484
P K QII E A+AA+ + ++ + + +S DS
Sbjct: 601 PEKIEQIIW-----CEPTPAQAAL--YREWQERSERELFDLESGGASDSALRLATLTQLL 653
Query: 485 ----ACC--RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAH 538
CC RL + AKL F E L A DG +++++F+
Sbjct: 654 RLRQICCDPRLVAEAAAAADSAKLGAFFELLEE----AVDDG----------HRLLVFSQ 699
Query: 539 HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF 598
+L ++ + +GI + +DG+ PR RQ+ V F S+EV + +I + AGG GL+
Sbjct: 700 FTSLLGLLRAGLDAQGIAYCYLDGSMSPRQRQAEVDRFNASDEVPVFLISLKAGGTGLNL 759
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ A VV + +P+ QA DRAHR GQT V Y T +E
Sbjct: 760 TGADTVVHFDPWWNPAAEAQATDRAHRIGQTRVVTSYKLICSGTVEE 806
>gi|116052602|ref|YP_792917.1| DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|421176716|ref|ZP_15634375.1| SNF2 family helicase [Pseudomonas aeruginosa CI27]
gi|32481700|gb|AAP84214.1| DNA helicase [Pseudomonas aeruginosa PA14]
gi|115587823|gb|ABJ13838.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404530353|gb|EKA40353.1| SNF2 family helicase [Pseudomonas aeruginosa CI27]
Length = 657
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 204/455 (44%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L + +A++++D
Sbjct: 309 REIQEVYPSA------TVAIQQDTPEA-----QWILVNYEQLSPFVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E ++R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 E------AQRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD + G +F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD-----RFAGN--PEFRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L +T ++ D +D RLG +
Sbjct: 452 QRQLLKVAL---------------------STEERQQYDVLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGHGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 629
>gi|386815665|ref|ZP_10102883.1| SNF2-related protein [Thiothrix nivea DSM 5205]
gi|386420241|gb|EIJ34076.1| SNF2-related protein [Thiothrix nivea DSM 5205]
Length = 1390
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 213/468 (45%), Gaps = 57/468 (12%)
Query: 193 LPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSILV 248
+P L + +Q EG R+ R G CL AD+MGLGKT+Q + + + G+ LV
Sbjct: 926 VPADLQAELRDYQEEGFRWMARLAEWGVGGCL-ADDMGLGKTVQTLGVLLARANQGAALV 984
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM 308
V P + +W E +R+ P P + R + + +++ SY +L + ++
Sbjct: 985 VAPVSVCNNWYSECQRFAPSLRP--LFYRGKDRQQLLEGLQPHDLLIASYGLLQQDAEAF 1042
Query: 309 IEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
W+ +++DE+ ++ +KRT +++ R+V +GTP + +++
Sbjct: 1043 QTIRWSTIVLDEAQAIKNTGAKRTQAAYQLQGDF-------RLVT-TGTPIENHLGELWS 1094
Query: 367 QINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426
L PGLL + + + +Q + +D R + L L+ Q M+RR
Sbjct: 1095 LFRFLNPGLL----------FSQQQFGERFQTPIERDNDDKAR-QHLKKLV-QPFMLRRT 1142
Query: 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS--- 483
K +L +LPP+ + + L +E+ +A I + +T + + H +
Sbjct: 1143 KNQVLQELPPRTEITLTVSLSDAELALYEA----IRQQALERFAQQTEEAENRHLEVLAE 1198
Query: 484 ------GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFA 537
AC + L +KL F E ++ ++ +K ++F+
Sbjct: 1199 ITRLRLAACHPQLAMPGSPLPSSKLQAFGELVT--------------ELRENQHKALVFS 1244
Query: 538 HHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597
+K L+ ++ ++ +GI + +DG+T R+ V +FQ E I +I + AGG GL+
Sbjct: 1245 QFVKHLELIRAWLDGQGIHYQYLDGSTPMEQRKQRVDAFQ-RGEGDIFLISLKAGGFGLN 1303
Query: 598 FSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++A V+ ++ +P++ QA DRAHR GQ V +Y A+ T +E
Sbjct: 1304 LTAADYVIHMDPWWNPAVEDQASDRAHRIGQQRPVTVYRLVAEGTIEE 1351
>gi|410080572|ref|XP_003957866.1| hypothetical protein KAFR_0F01350 [Kazachstania africana CBS 2517]
gi|372464453|emb|CCF58731.1| hypothetical protein KAFR_0F01350 [Kazachstania africana CBS 2517]
Length = 1058
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 148/681 (21%), Positives = 272/681 (39%), Gaps = 141/681 (20%)
Query: 169 DTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIAD 223
D W P ++ D ++E+ K+P + ++ +Q V+ F + GG +I D
Sbjct: 256 DLPEWRKPHP-NIPDARLNELF-KIPGEIYSLLFGYQKTCVQWLYELFQQQSGG--IIGD 311
Query: 224 EMGLGKTLQAIAIAACF----ISAGSILVVCPAILRLSWAEELERWLP------------ 267
EMGLGKT+Q IA A + G +L+VCPA + W EL W P
Sbjct: 312 EMGLGKTIQVIAFVASLHHSGLLNGPVLIVCPATVMKQWVNELHHWWPPLRAIILHAIGS 371
Query: 268 -------------------------------------FCLPADIHLV--FGHRNNPVHLT 288
+ L +D++LV N H
Sbjct: 372 GMSMKKKLTEDELEQILLRSTPDEFSYNDFQKSSKAKYALESDMNLVSLIDKVVNNGH-- 429
Query: 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
+++ +Y L +++ +WA I+DE H +R P A+ K +
Sbjct: 430 ----ILITTYVGLRIHSDKLLKINWAYAILDEGHKIR------NPNSEIAITCKKLKTRN 479
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
++LSGTP + +++ + + PG LG F + + + GY G
Sbjct: 480 RIILSGTPIQNNLNELWSLFDFILPGKLGTLPV-FQQQFVMPINMGGYANASNIQVQTGY 538
Query: 409 RLEELNVLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKR---------------SE 450
+ V L+ + ++RR+K + LP K+ ++ L + SE
Sbjct: 539 KCA---VTLRDIISPYLLRRVKSDVAKDLPHKKEMVLFCKLTQYQRNKYIEFLNSKELSE 595
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
I K V D + N D D+ +D +SY G K SG + +
Sbjct: 596 IKGGKRHVLYGIDILRKICNHPDILDKDKLEDD--------VSY---GNPKRSGKMQVVK 644
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDGNTL 565
++ + +G +K ++F ++LD +++FIS K I ++R+DG T
Sbjct: 645 QLLLLWKDEG----------HKTLLFTQSRQMLDILEQFISYKDPEMENINYLRMDGTTN 694
Query: 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625
RQ V F N + ++ GG+G++ + A ++ + +PS +QA +RA R
Sbjct: 695 ISKRQELVDRFNNEN-YDLFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWR 753
Query: 626 RGQTSAVNIYIFCAKDTTDES--HWQNLNKSL--RCVSSATNGKYDALQEI-------AV 674
GQ V+IY + +E H Q + L + +S ++ + E+
Sbjct: 754 IGQKREVSIYRLMVSGSIEEKIYHRQIFKQFLTNKILSDPKQKRFFKMNELHDLFSLGGD 813
Query: 675 EGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMND 734
+GV ++++ + + +L + SD ++++++ S+ F + E + +D
Sbjct: 814 DGVLNERLTEEVQKHTANLKNSKTTESDDLEQVVQIQGVSKLEGFYSGKEQKEASKNEDD 873
Query: 735 KLLE-----ESKTDHSPTETD 750
+L+E ES +++ T D
Sbjct: 874 RLIEGLLGGESNLENAKTHED 894
>gi|303327511|ref|ZP_07357952.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345891624|ref|ZP_08842463.1| hypothetical protein HMPREF1022_01123 [Desulfovibrio sp. 6_1_46AFAA]
gi|302862451|gb|EFL85384.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345048008|gb|EGW51855.1| hypothetical protein HMPREF1022_01123 [Desulfovibrio sp. 6_1_46AFAA]
Length = 1085
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 228/496 (45%), Gaps = 38/496 (7%)
Query: 194 PKSLLDVILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSIL 247
PK L + +Q +G+ F G ++ADEMGLGKT+Q +A + + G L
Sbjct: 616 PKGLDANLRAYQAQGLSYLNFLSEYGFGGILADEMGLGKTVQTLAFIQYMVESHYEGPNL 675
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV--HLTRFPRVVVISYTMLHRLR 305
+V P + +W E E+++P I +G R + H+ +V+ +Y +L R
Sbjct: 676 IVVPTSVLPNWEREAEKFVPGLKRLTI---YGTRREGMFKHIAG-SDLVITTYALLRRDL 731
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ M + ++ +I+DE+ +++ + +AV + A+++ + LSGTP + ++++
Sbjct: 732 EEMEKYEFNTVILDEAQNIKNPNTIT----ARAVRRINARMR--LCLSGTPIENNLFELW 785
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
L PG LG +++ F + VK ++ + VR ++RR
Sbjct: 786 SLFEFLMPGFLG-SQHAFQRGI--VKPIKDGDAETLDYLRTRVR----------PFILRR 832
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
K + LPPK + L+ ++ AA+ ++ A D+ + A
Sbjct: 833 TKAEVAKDLPPKVESVTCCALEEAQ-AELYAALARKLRAQVLADVDQKGLAKSQMSILDA 891
Query: 486 CCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
+L +I + L L GF L A D +++ +K+++F+ +++L
Sbjct: 892 LLKLRQICCHPRLLKMDLPGFSNNLPSGKFDAFKDMV--LEIVEGGHKVLVFSQFVQMLQ 949
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+++++ + F +DG + +DR V F S ++ I +I + AGG GL+ +SA V
Sbjct: 950 IIKQWLEFSQVPFCYLDGAS--KDRFDQVDRFNNSPDIPIFLISLKAGGTGLNLTSADYV 1007
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG 664
+ + +P++ QA DR HR GQT V Y ++T +E + L ++ R V+ A
Sbjct: 1008 IHYDPWWNPAVESQATDRTHRIGQTRQVFSYKLICQNTVEEKILK-LQEAKRGVAEAIIP 1066
Query: 665 KYDALQEIAVEGVSYL 680
D + + E + L
Sbjct: 1067 GQDTWKSLTREDLEML 1082
>gi|302653552|ref|XP_003018600.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
gi|291182257|gb|EFE37955.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
Length = 1518
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/479 (24%), Positives = 209/479 (43%), Gaps = 64/479 (13%)
Query: 201 ILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPAIL 254
++ +QLEG + F + ++ADEMGLGKT+Q I+ A I + LVV P
Sbjct: 674 LMDYQLEGLNWIYFMWYKQQSSVLADEMGLGKTIQVISFFATLIQDHNCWPFLVVVPNST 733
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--------RVVVISYTML--HRL 304
+W +E++RW P + R FP +VV SY + +
Sbjct: 734 CANWRQEIKRWTPSLRVVTCYGSAAARKIAQEYEMFPCSSKELRCHIVVTSYESMIEDKT 793
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
RK WA L+VDE H ++ K + + +L ++ V +LL+GTP + D+
Sbjct: 794 RKLFSNIPWAGLVVDEGHRLKNDKN----QLYETLLKMS--VPFTLLLTGTPLQNNIRDL 847
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL--LKQTVM 422
F N+L +CD + + ++ K + E +N L + +
Sbjct: 848 F---NIL--------------QFCD----RSHNAVALEEEYKEMTNENVNKLHDMIRPFF 886
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-------KDATNDKTPK 475
+RR K +L LPP + I+ + + IV K +++ + K+ + T K
Sbjct: 887 LRRTKAQVLSFLPPVAQIILPVSMT---IVQKKLYKSILSKNSQLIKSVFKNTGTNSTVK 943
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS--IHPVIAESDGAADIDVNP----- 528
S+ H+ + +L K +K R S +H + E+ +
Sbjct: 944 QSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKLQ 1003
Query: 529 -RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-I 586
R ++++IF+ L LD V++F+ G+ +R+DG+ +Q + ++ A +
Sbjct: 1004 ERGHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFL 1063
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVG++ ++A V+ L+ +P +QA RAHR GQ V ++ + + +E
Sbjct: 1064 LSTRAGGVGINLATADTVIILDPDFNPHQDIQALSRAHRIGQKKKVMVFQLMTRGSAEE 1122
>gi|426255946|ref|XP_004021608.1| PREDICTED: DNA excision repair protein ERCC-6 [Ovis aries]
Length = 1481
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/504 (22%), Positives = 220/504 (43%), Gaps = 62/504 (12%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD +DE K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 479 SDAELDEGF-KMPGFLFRKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 535
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV--FGH 280
A F G ++VCP + W +E W P A +H F H
Sbjct: 536 LAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAVLHETGSFTH 595
Query: 281 RNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
+ + + +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 596 KKERLVRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR---------NPNA 646
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 647 AITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGG 705
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--RLLLKR 448
Y + +L+ T+ ++RR+K + + LP K Q++ RL ++
Sbjct: 706 YSNASPVQVKTAYK---CACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 762
Query: 449 SEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKL 502
++ + +K ++N + + + H D SG L +ELG +
Sbjct: 763 HKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKSLKGAPDEELGEDEF 822
Query: 503 SGFREWLSIHPVIAESDGAADIDV-NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
++ S ++ ES + + + + ++++F+ ++LD ++ F+ + ++++D
Sbjct: 823 GYWKR--SGKMIVVES----LLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMD 876
Query: 562 GNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAED 621
G T RQ + + V + ++ GG+G++ + A V+ + +PS QA +
Sbjct: 877 GTTAIASRQPLIARYNEDTSVFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARE 936
Query: 622 RAHRRGQTSAVNIYIFCAKDTTDE 645
RA R GQ V +Y T +E
Sbjct: 937 RAWRIGQKKQVTVYRLLTAGTIEE 960
>gi|421169572|ref|ZP_15627584.1| SNF2 family helicase [Pseudomonas aeruginosa ATCC 700888]
gi|404526097|gb|EKA36330.1| SNF2 family helicase [Pseudomonas aeruginosa ATCC 700888]
Length = 657
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 205/455 (45%), Gaps = 79/455 (17%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWA 259
+L Q +G+ L+R L+AD+MGLGKT QA+ IAA +AG ILV+ A L ++W
Sbjct: 251 LLAHQPDGIAHLLQRTS-ALLADDMGLGKTRQAV-IAASIRAAGRPILVITLATLLINWQ 308
Query: 260 EELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVD 319
E++ P V ++ P + ++++Y L L + +A++++D
Sbjct: 309 REIQEVYPSAT------VAIQQDTPEA-----QWILVNYEQLSPLVANA--SRFAVMVID 355
Query: 320 ESHHVRCSKRTSEPEE--VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377
E+ +R EP + D+AA+V LL+GTP L+R ++ H + L +G
Sbjct: 356 EA------QRMKEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETEL-HTLLRLSGHPIG 408
Query: 378 KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437
+ K +CD G G F + +R E + +L++ ++ +L L K
Sbjct: 409 QLPL---KEFCD--RFAGNPG-----FRQSLRAELGDWMLRR-------RKDVLPSLKGK 451
Query: 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497
+RQ++++ L ++ ++ + +D RLG +
Sbjct: 452 QRQLLKVAL---------------------SSEERQQYEMLRLEDRPVFARLGAL----- 485
Query: 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGF 557
R +L V D +++D +K+I+F + ++E + G+G
Sbjct: 486 --------RRYLETVKVRVAMDLLSELDAE---DKVILFCEFKPTVAALKELCEQAGLGC 534
Query: 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
V + GN RQ A+ FQ + ++ I A G G + ++A V FL LP +P
Sbjct: 535 VTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLTAANYVFFLGLPWTPGQQE 594
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652
QAEDRA+R GQ V + I + T DE WQ LN
Sbjct: 595 QAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLN 629
>gi|440714115|ref|ZP_20894701.1| SNF2 family helicase [Rhodopirellula baltica SWK14]
gi|436441104|gb|ELP34379.1| SNF2 family helicase [Rhodopirellula baltica SWK14]
Length = 914
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 204/454 (44%), Gaps = 65/454 (14%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA---ACFISAGSILVVCPAILRLS 257
+LP+QL+G+ F GR ++AD+MGLGKT+Q I +A A +LVVCPA L+
Sbjct: 346 LLPYQLDGIAFAAG-AGRAILADDMGLGKTIQGIGVAELLAKLSDISRVLVVCPASLKSQ 404
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALL 316
W +E+ R+ +V G + I +Y + R ++ W L+
Sbjct: 405 WRDEIARF----SGRSSQIVLGKGEERIEQYESDTFFTICNYEQVLRDLTAVENVSWDLI 460
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE + + E + + + + + ++LSGTP +R ++F + LL
Sbjct: 461 ILDEGQRI----KNWESKTSNVIRQLESPFR--LVLSGTPLENRLGELFTVTRFIDDDLL 514
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQL 434
G A Y F +Q + D K + +L+VL ++ V++RR + + QL
Sbjct: 515 GPA-YQFF-----------HQHHVVDDRGKTLGYRQLDVLREKMRPVLLRRTRAEVAKQL 562
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS---GACCRLGK 491
P + +IIR A A ++D+ K D C + +
Sbjct: 563 PDRTDEIIR--------CEATAEQKEVHDANMKVVAQIAAKKFMTEMDRLRMQKCLLMAR 614
Query: 492 ISYQELGI---------AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV 542
++ + +KL E L +IA+ + K+++F+ ++
Sbjct: 615 MACDSTYLLDQEADEYSSKLERLGELL--EGLIADP-----------TRKIVLFSEWRRM 661
Query: 543 LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSA 601
L V+ + + G +VR+DG + R + V FQ N+ + +I +T AG GL+ +A
Sbjct: 662 LTRVENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQ--NDPECRLINMTNAGSTGLNLQAA 719
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
V+ ++LP +P+++ Q RA+R GQ + V++Y
Sbjct: 720 NTVINVDLPWNPAVLEQRIARAYRMGQENPVHVY 753
>gi|390443816|ref|ZP_10231601.1| SNF2-like protein [Nitritalea halalkaliphila LW7]
gi|389665589|gb|EIM77053.1| SNF2-like protein [Nitritalea halalkaliphila LW7]
Length = 980
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 212/447 (47%), Gaps = 63/447 (14%)
Query: 217 GRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPAD 273
G CL AD+MGLGKT+Q +A+ A A + L++ P L +W E +++ P
Sbjct: 542 GGCL-ADDMGLGKTVQTLALLAHRKEAAEGTTSLLIMPTSLIYNWEVEAKKFTPKLKV-- 598
Query: 274 IHLVFGHRNNPVHLTRFPR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC-SKRT 330
LV+ + +F VV+ SY + + + + +I+DES ++ R
Sbjct: 599 --LVYAGTHRIKRAAQFSAYDVVLTSYGITRIDIEILKSFYFDYIILDESQAIKNPGSRI 656
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
+ KAV ++ + ++L+GTP + D++ Q+N + PGLLG F K +
Sbjct: 657 A-----KAVNELHCNHR--LILTGTPVENGTMDLWSQMNFINPGLLGNQN-SFKKQFLLP 708
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE 450
Q D K V+L + ++RRLK + LP K + + S
Sbjct: 709 IEKQA-------DTDKIVKLHAT----IKPFILRRLKTQVATDLPEKVINV-----RYSS 752
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK-LSGFREWL 509
+ + + V ++ + K + E SG + Q+ + + L+ R+ L
Sbjct: 753 MTAEQEKV------YEEVKSRYREKIAQEFSISG-------LRNQQFTLLRGLTQLRQ-L 798
Query: 510 SIHPVIAESDGAAD----------IDVNP-RSNKMIIFAHHLKVLDGVQEFISEKGIGFV 558
+ HP + + D +D +K+++F+ ++ L ++E++ EKG+ +
Sbjct: 799 ANHPRLVDKGYTGDSGKLEDVIHMLDATASEGHKVLVFSQFVRHLAIIREYLEEKGMPYA 858
Query: 559 RIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618
+DG T +DR+ V FQ EVK+ +I + AGGVGL+ ++A+ V L+ +P++ Q
Sbjct: 859 YLDGTT--KDRREQVTKFQEDKEVKVFLISLKAGGVGLNLTAAEYVFLLDPWWNPAVEAQ 916
Query: 619 AEDRAHRRGQTSAVNIYIFCAKDTTDE 645
A DRAHR GQ + V IY F +K+T +E
Sbjct: 917 AIDRAHRIGQENKVIIYKFISKETVEE 943
>gi|295424920|ref|ZP_06817632.1| possible non-specific serine/threonine protein kinase [Lactobacillus
amylolyticus DSM 11664]
gi|295065359|gb|EFG56255.1| possible non-specific serine/threonine protein kinase [Lactobacillus
amylolyticus DSM 11664]
Length = 1090
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/476 (26%), Positives = 227/476 (47%), Gaps = 64/476 (13%)
Query: 191 GKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245
K+P SL V+ P+Q++G ++ GG L+ADEMGLGKTLQ I++ +
Sbjct: 620 NKIPASLKKVLRPYQVKGYQWMTTLLDYNLGG--LLADEMGLGKTLQVISVLLARKAKTK 677
Query: 246 I--LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP-RVVVISYTMLH 302
+ L+V PA + +W E++++ P I L + L R +V++ SY L
Sbjct: 678 LPSLIVVPASVVYNWEAEIKKFAPEL--EMIVLGGSKKERREQLERVTDQVLITSYDSLK 735
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLS 359
R K + + L ++DE+ +++ +K KAV + A+ + + L+GTP +LS
Sbjct: 736 RDLKLYEKIGFDLEVIDEAQNIKNAKAAVS----KAVKIINARHR--LALTGTPIENNLS 789
Query: 360 RPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419
+ IF + L PG LG+ Y++ ++ + V+ +D KG +L ++
Sbjct: 790 ELWSIF---DYLMPGFLGE--YEYFRSNYEKPIVKD------EDKKKGKQLSQIIA---- 834
Query: 420 TVMIRRLKQHLLVQLPPKRRQII--RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
++RRLK+ +L LP K Q+I +L ++ E+ A+ + +++D + K +
Sbjct: 835 PFVLRRLKKDVLKDLPEKDEQVIYAKLSGRQDELYQAQTQKLIAQLNKQDDKDFKKQR-- 892
Query: 478 DEHDDSGACCRLGKIS------YQEL--GIAKLSGFREWLSIHPVIAESDGAADIDVNPR 529
A +L ++ Y++ AKL+ E + D AD
Sbjct: 893 --FQVLAAITKLRELCCDPHLLYEDYRGKSAKLAATMELIE--------DSIAD------ 936
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
+K+++F+ +L+ +++ + + I I G+T + RQ + F + I +I +
Sbjct: 937 GHKILLFSQFTSMLELIEQKLKQAKIVTFVITGSTPKQKRQELIKQFNKLDHPAIFLISL 996
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG G++ +SA V+ + + + QA DRAHR GQ V IY AK T +E
Sbjct: 997 KAGGTGINLTSADVVIHYDPWWNVAAENQATDRAHRIGQKHNVQIYKMVAKGTIEE 1052
>gi|257438160|ref|ZP_05613915.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
gi|257199491|gb|EEU97775.1| SNF2 family N-terminal domain protein [Faecalibacterium prausnitzii
A2-165]
Length = 1119
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 123/471 (26%), Positives = 210/471 (44%), Gaps = 62/471 (13%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS--- 245
P SL V+ +Q +G R+ G GG ++AD+MGLGKT+Q ++ G
Sbjct: 652 PASLQKVLRKYQRDGYRWLRTLDGYGMGG--ILADDMGLGKTVQVLSYLLALREQGGNPL 709
Query: 246 -ILVVCPAILRLSWAEELERWLP--FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH 302
L+VCPA L L+WAEE +++ P C+ D HR VVV SY +L
Sbjct: 710 PSLIVCPASLVLNWAEECQKFTPELNCVVVDGDAA--HRAQLAEQWDGADVVVTSYDLLR 767
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
R Q + I+DE+ + + ++ KAV V ++V+ L+GTP +R
Sbjct: 768 RDETLYESQKFYACILDEAQAI----KNHTTQKYKAVCGVNSRVR--FALTGTPVENRLG 821
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ + L PG L K++C ++ + Q+ + LN L +
Sbjct: 822 ELWSIFSFLMPGYLPP-----YKSFCSR-----FEKPITQENDPAA-VRRLNQ-LTGPFI 869
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RR+K +L +LPPK + R+ L+ + AA V++ EK + K D+
Sbjct: 870 LRRMKSEVLKELPPKTENVYRIELEEEQRKLYLAA--VVDAREK----LRAAKPEDKMAV 923
Query: 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID--------VNPRSNKMI 534
RL +I IA W + G+A +D ++++
Sbjct: 924 FAVLMRLREICCDPRLIAD-----NW---------TGGSAKLDACIELVTSAVESGHRIL 969
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594
+F+ +L+ + + + +G+ + G+T R V F E + +I + AGG
Sbjct: 970 LFSQFTSMLELLAKRLDAEGVSHFTLQGSTPKPVRAELVRRFN-GGEASVFLISLRAGGT 1028
Query: 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ + + + QA DRA+R GQ + V +Y +DT +E
Sbjct: 1029 GLNLTAADIVIHYDPWWNVAAQNQATDRAYRIGQQNPVQVYKLITQDTIEE 1079
>gi|417304923|ref|ZP_12091919.1| SNF2 family helicase [Rhodopirellula baltica WH47]
gi|327538790|gb|EGF25438.1| SNF2 family helicase [Rhodopirellula baltica WH47]
Length = 914
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/446 (25%), Positives = 206/446 (46%), Gaps = 49/446 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA---ACFISAGSILVVCPAILRLS 257
+LP+QL+G+ F GR ++AD+MGLGKT+Q I +A A +LVVCPA L+
Sbjct: 346 LLPYQLDGIAFAAG-AGRAILADDMGLGKTIQGIGVAELLAKLSDISRVLVVCPASLKSQ 404
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALL 316
W +E+ R+ +V G + I +Y + R ++ W L+
Sbjct: 405 WRDEIARF----SGRSSQIVLGKGEERIEQYESDTFFTICNYEQVLRDLTAVENVSWDLI 460
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE + + E + + + + + ++LSGTP +R ++F + LL
Sbjct: 461 ILDEGQRI----KNWESKTSNVIRQLESPFR--LVLSGTPLENRLGELFTVTRFIDDDLL 514
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT--VMIRRLKQHLLVQL 434
G A Y F +Q + D K + +L+VL ++ V++RR + + QL
Sbjct: 515 GPA-YQFF-----------HQHHVVDDRGKTLGYRQLDVLREKMRPVLLRRTRAEVAKQL 562
Query: 435 PPKRRQIIR--LLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI 492
P + +IIR ++ E+ A V ++K T + + C +
Sbjct: 563 PDRTDEIIRCEATAEQKEVHDANMKVVAQIAAKKFMTEMDRLRMQKCLLMARMACDSTYL 622
Query: 493 SYQELG--IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI 550
QE +KL E L +IA+ + K+++F+ ++L ++ +
Sbjct: 623 LDQEADEYSSKLERLGELL--EGLIADP-----------TRKIVLFSEWRRMLTRIENRL 669
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLEL 609
+ G +VR+DG + R + V FQ N+ + +I +T AG GL+ +A V+ ++L
Sbjct: 670 DQIGCDYVRLDGQVPQKKRAAIVSRFQ--NDPECRVINMTNAGSTGLNLQAANTVINVDL 727
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIY 635
P +P+++ Q RA+R GQ + V++Y
Sbjct: 728 PWNPAVLEQRIARAYRMGQENPVHVY 753
>gi|430812744|emb|CCJ29865.1| unnamed protein product [Pneumocystis jirovecii]
Length = 796
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 130/522 (24%), Positives = 231/522 (44%), Gaps = 111/522 (21%)
Query: 200 VILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAIAACFI---------S 242
++ P Q+EGV+F + R C++ADEMGLGKTLQ I + + +
Sbjct: 209 ILRPHQIEGVKFLYKCVTGMVDFRANGCIMADEMGLGKTLQCITLMWTLLKQSPQAKRST 268
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTR------------ 289
++VCP+ L +WA EL++WL I+ L+ +NN L
Sbjct: 269 IQKAIIVCPSSLVRNWANELDKWLG---KGTINPLIIDKKNNRDQLVLSLSKWVSATGKD 325
Query: 290 -FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
+++ISY ML + + LL+ DE H ++ S+ + + LD + +V+R
Sbjct: 326 IVQPILIISYEMLRMNIDQLKKCPIGLLLCDEGHRLKNSESLTF-----SALD-SLQVQR 379
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408
++LSGTP + + F +N + PGLLG ++ +F KT+ ++ ++G + L D + +
Sbjct: 380 RIILSGTPIQNDLSEYFSLLNFVNPGLLG-SRSEFRKTF-ELPILKG-RDALGTDKDREI 436
Query: 409 ---RLEELNVLLKQTVMIRR----LKQHLLVQ--------LPPKRRQIIRLLLKRSEIVS 453
+LEEL+VL+ + + IRR L ++L V+ L P ++ + + + E+ +
Sbjct: 437 GDHKLEELSVLVNKFI-IRRTNDILSKYLPVKYEHVVFCNLSPFQKDLYKSFVSSREVNN 495
Query: 454 AKAAVG-----------------VINDSEKDAT-------NDKTPKDSDEHDDSGACCRL 489
+G + D E D ND PK+S + D
Sbjct: 496 LVKGIGNQPLKAIDFLKKLCNHPTLLDIENDLKQFEHCFPNDFIPKNSKDRD--IKIWYS 553
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549
GK+ + +A++ D N +K+++ +++ + L+ +++
Sbjct: 554 GKMMVLDRMLARIRK--------------------DTN---DKIVLISNYTQTLNLLEKL 590
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQ--LSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607
+ G +R+DG RQ + F S+E I ++ AGG GL+ A ++
Sbjct: 591 CRSRRYGSLRLDGTMNTNKRQKLIDKFNDPESDEF-IFLLSSKAGGCGLNLIGANRLILF 649
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
+ +P+ QA R R GQ IY F A T +E +Q
Sbjct: 650 DPDWNPAADQQALARVWRDGQKKDCFIYRFIATGTIEEKIFQ 691
>gi|47216737|emb|CAG01011.1| unnamed protein product [Tetraodon nigroviridis]
Length = 236
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 103/172 (59%), Gaps = 15/172 (8%)
Query: 225 MGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
MGLGKT+QAIA+A F +LVV P+ L+ W EELERW+P P DI+LV N
Sbjct: 1 MGLGKTVQAIAVAYAFRKEWPLLVVVPSSLKYPWIEELERWIPELQPGDINLV----ENK 56
Query: 285 VHLTRF--PRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKA 338
H +V V+ Y +L + ++E Q++A+++VDESH+++ R + ++ A
Sbjct: 57 SHTMGIGSSKVTVLGYGLLTSDARPLVEALNRQNFAVVVVDESHYLK--SRNAARTKILA 114
Query: 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
L +A KR VLL+GTP+L RP ++F QI+ L+P G D+AK YC+
Sbjct: 115 PLIQSA--KRAVLLTGTPALGRPEELFMQIDALYPKRFGTWS-DYAKKYCNA 163
>gi|302504244|ref|XP_003014081.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
gi|291177648|gb|EFE33441.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
Length = 1518
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/479 (24%), Positives = 209/479 (43%), Gaps = 64/479 (13%)
Query: 201 ILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPAIL 254
++ +QLEG + F + ++ADEMGLGKT+Q I+ A I + LVV P
Sbjct: 674 LMDYQLEGLNWIYFMWYKQQSSVLADEMGLGKTIQVISFFATLIQDHNCWPFLVVVPNST 733
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--------VVVISYTML--HRL 304
W +E++RW P + R FPR +VV SY + +
Sbjct: 734 CAKWRQEIKRWTPSLRVVTCYGSAAARKIAQEYEMFPRLSKDLRCHIVVTSYESMIEDKT 793
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
RK WA L+VDE H ++ K + + +L ++ V +LL+GTP + ++
Sbjct: 794 RKLFSNIPWAGLVVDEGHRLKNDKN----QLYETLLKMS--VPFTLLLTGTPLQNNIREL 847
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL--LKQTVM 422
F N+L +CD + + ++ K + E +N L + +
Sbjct: 848 F---NIL--------------QFCD----RSHNAVALEEEYKEMTNENVNKLHDMIRPFF 886
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-------KDATNDKTPK 475
+RR K +L LPP + I+ + + IV K +++ + K+ + T K
Sbjct: 887 LRRTKAQVLSFLPPVAQIILPVSMT---IVQKKLYKSILSKNSQLIKSVFKNTGTNSTVK 943
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS--IHPVIAESDGAADIDVNP----- 528
S+ H+ + +L K +K R S +H + E+ +
Sbjct: 944 QSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKLQ 1003
Query: 529 -RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-I 586
R ++++IF+ L LD V++F+ G+ +R+DG+ +Q + ++ A +
Sbjct: 1004 ERGHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFL 1063
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVG++ ++A V+ L+ +P +QA RAHR GQ V ++ + + +E
Sbjct: 1064 LSTRAGGVGINLATADTVIILDPDFNPHQDIQALSRAHRIGQKKKVMVFQLMTRGSAEE 1122
>gi|449137775|ref|ZP_21773085.1| helicase, Snf2 family protein [Rhodopirellula europaea 6C]
gi|448883533|gb|EMB14056.1| helicase, Snf2 family protein [Rhodopirellula europaea 6C]
Length = 914
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 206/448 (45%), Gaps = 53/448 (11%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRLS 257
+LP+QL+G+ F GR ++AD+MGLGKT+Q I +A + I LVVCPA L+
Sbjct: 346 LLPYQLDGIAFAAG-AGRAILADDMGLGKTIQGIGVAELLANLSDISRVLVVCPASLKSQ 404
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI-SYTMLHRLRKSMIEQDWALL 316
W +E+ R+ ++ G + + + I +Y + R ++ W L+
Sbjct: 405 WRDEINRF----SGRSSQIILGKGDERIEQYQGDAFFTICNYEQVLRDLTAVENVPWDLI 460
Query: 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376
I+DE + + E + + + + + ++LSGTP +R ++F + LL
Sbjct: 461 ILDEGQRI----KNWESKTSNVIRQLESPFR--LVLSGTPLENRLGELFTVTRFIDDDLL 514
Query: 377 GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK--QTVMIRRLKQHLLVQL 434
G A Y F Q + D K + +L+VL + + V++RR + + QL
Sbjct: 515 GPA-YQFFN-----------QHHVVDDRGKTLGYRQLDVLRETMRPVLLRRTRAEVAKQL 562
Query: 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494
P + +IIR + + A + ++ ++ A T D R+ S
Sbjct: 563 PDRTDEIIRCEATAEQKEAHDANMKIV--AQIAAKKFMTEMDRLRIQKCLLMARMACDST 620
Query: 495 QELG------IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE 548
L +KL E L +IA+ + K+++F+ ++L ++
Sbjct: 621 YLLDQEADEYSSKLDRLAELL--EGLIADP-----------TRKIVLFSEWRRMLSRIEN 667
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFL 607
+ E G +VR+DG + R + V FQ N+ + +I +T AG GL+ +A V+ +
Sbjct: 668 RLDEIGCDYVRLDGQVPQKKRAALVARFQ--NDPECRVINMTNAGSTGLNLQAANTVINV 725
Query: 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIY 635
+LP +P+++ Q RA+R GQ + V++Y
Sbjct: 726 DLPWNPAVLEQRIARAYRMGQENPVHVY 753
>gi|392964076|ref|ZP_10329497.1| SNF2-related protein [Fibrisoma limi BUZ 3]
gi|387846971|emb|CCH51541.1| SNF2-related protein [Fibrisoma limi BUZ 3]
Length = 995
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 217/483 (44%), Gaps = 83/483 (17%)
Query: 193 LPKSLLDVILPFQLEGVRFG--LR--RGGRCLIADEMGLGKTLQAIAIAACFISAG---S 245
LPK + P+Q G + LR R G CL AD+MGLGKT+ +A+ G
Sbjct: 529 LPKQFNGTLRPYQHAGYDWMNFLRQYRFGGCL-ADDMGLGKTVMTLAMLQGQKELGITEP 587
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+V P L +W E ++ P L ++ N + +++ SY ++
Sbjct: 588 TLLVMPTSLLYNWELEARKFTP-DLRVMVYTGTYRDKNTAQFDDYD-LILTSYGIVRIDI 645
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + + + +I+DES ++ KAV+ + + + ++L+GTP + D++
Sbjct: 646 ELIKDYRFNYVILDESQAIK----NPSSHITKAVMQLNSANR--LILTGTPLENSTMDLW 699
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ--GQLFQDFSKGVRLEELNVLLKQTVMI 423
Q+ + PGLLG + + ++ Q G+L+ L + M+
Sbjct: 700 TQMTFINPGLLGSQSFFRNEFQVPIEKRHDEQKTGRLYG--------------LIKPFML 745
Query: 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
RR K + LP K I+ ++ TP+ +++++
Sbjct: 746 RRNKAQVATDLPEKVESIL--------------------------YSEMTPEQEKQYEEA 779
Query: 484 GACCR---LGKISYQELGIAK-----LSGFREWLSI--HPVIA----ESDGAADIDVNPR 529
+ R L +I +E G+AK L G + I HP + E D DV R
Sbjct: 780 KSYYRNLILERI--EEDGMAKSQMIVLQGLTKLRQIANHPRMIDDTYEGDSGKLEDVLMR 837
Query: 530 -------SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+K+++F+ +K L V++++ EK I + +DG+T +DRQS V FQ + V
Sbjct: 838 LESAMTDHHKVLVFSQFIKHLSVVRQYLKEKNIKYAYLDGST--QDRQSQVELFQTDDSV 895
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
K+ +I + AGG+G + ++A V L+ +P++ QA DRAHR GQ V Y F K+T
Sbjct: 896 KLFLISLKAGGLGHNLTAADYVFILDPWWNPAIEAQAVDRAHRIGQKKTVFTYKFITKNT 955
Query: 643 TDE 645
+E
Sbjct: 956 VEE 958
>gi|307199491|gb|EFN80104.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
[Harpegnathos saltator]
Length = 1948
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 125/493 (25%), Positives = 214/493 (43%), Gaps = 108/493 (21%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILR 255
P+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P
Sbjct: 721 PYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTI 780
Query: 256 LSWAEELERWLP--FCLP----ADIHLVFGHRNNPVHL----TRFPR------------V 293
++W E E W P +C+ D +V R N + R R V
Sbjct: 781 INWEREFETWAPDFYCVTYVGDKDSRIVI--RENELSFEEGAVRSGRASKIRSSSIKFNV 838
Query: 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353
++ SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+
Sbjct: 839 LLTSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLT 892
Query: 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEEL 413
GTP + ++FH +N L + K++ + +Q + F D SK ++++L
Sbjct: 893 GTPLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKL 937
Query: 414 NVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKT 473
+ +L M+RRLK +L +P K I+R+ L + K I +A N
Sbjct: 938 HEMLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN--- 989
Query: 474 PKDSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIH 512
PK + D CC + SY+ + K +G LS
Sbjct: 990 PKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETSALIKAAGKLVLLSKM 1049
Query: 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSA 572
DG ++++IF+ K+LD +++++ +G + RIDG
Sbjct: 1050 LKKLRGDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDG---------- 1089
Query: 573 VHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
F + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 1090 AQQF-------VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKV 1142
Query: 633 NIYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1143 MIYRFVTRNSVEE 1155
>gi|256074706|ref|XP_002573664.1| helicase [Schistosoma mansoni]
Length = 1156
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 130/512 (25%), Positives = 233/512 (45%), Gaps = 79/512 (15%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRL 256
P+QL G+ R ++ADEMGLGKT+QAIA A +G+ L++CP+ +
Sbjct: 549 PYQLVGLNWLRLLHHEQVNGILADEMGLGKTVQAIAFLASLWESGNRGPHLIICPSSTQD 608
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML---HRLRKSMIEQDW 313
+W EL W P L ++ + + L + + +L + + S IE D
Sbjct: 609 NWQRELSLWCPH-LKVLVYQGSAEQRKAIRLKIYESESQPDFNILLTSYAVGTSAIE-DR 666
Query: 314 ALL--------IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
AL+ I DE+H ++ TS+ + +++ +V+R +LL+GTP + ++
Sbjct: 667 ALMKRINFHYGIFDEAHMLK--NMTSQ--RYRNLMNF--RVQRRLLLTGTPLQNNLLELV 720
Query: 366 HQINMLWP-------GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
++ + P LL + ++K + Q + + RL + LL
Sbjct: 721 SLLSFVMPEMFLKSTDLLKRIFQIYSKPMNSREEDQSANNSPIRSSFEEERLVQAKSLL- 779
Query: 419 QTVMIRRLKQHLLVQLPPKRRQII-----------------RLLLKRSEIVSAKAAVGVI 461
Q +RRLK +L QLPPK +++ RLL +S S ++ ++
Sbjct: 780 QPFCLRRLKSQVLGQLPPKTSEVVLVAMTKTQATHYHDLVKRLLTSKSISESLQSPCNMV 839
Query: 462 NDSEKDATN----------DKTPKDSDE--HDDSGACCRLGKISYQEL------GIAKLS 503
K A + D +D E H D + Y++L I KL
Sbjct: 840 TALRKAANHQALFSGLAYTDSNLRDIAESLHLDPSHSNADPNLIYEDLLAMSDHQIHKLC 899
Query: 504 GFREWLSIHPVIAES--DGAADI----DVNPR----SNKMIIFAHHLKVLDGVQEFISEK 553
F E LS + + ES G+ I D P+ ++++IF+ + +LD ++EF+
Sbjct: 900 QFYETLSSYTLSPESIISGSGKIQWLNDNLPKLVSEGHRILIFSQFVIMLDILEEFLRIT 959
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
++R+DG+T +RQ+ + F S+ +++ ++ AGG+G++ + A V+ ++ +P
Sbjct: 960 NRRYIRMDGSTPVSERQTLIDRFN-SSSIEVFLLSTRAGGLGINLTGADTVIIHDIDFNP 1018
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QAEDR HR GQ + V++ ++ T +E
Sbjct: 1019 YNDRQAEDRCHRLGQKNPVHVIRLISEGTLEE 1050
>gi|449547038|gb|EMD38006.1| DNA repair protein SNF2 family [Ceriporiopsis subvermispora B]
Length = 814
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 138/541 (25%), Positives = 225/541 (41%), Gaps = 74/541 (13%)
Query: 197 LLDVILPFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIAACFI------- 241
L V+ P Q+EGV+F G+ + C++ADEMGLGKTLQ IA+ +
Sbjct: 217 LSKVLRPHQVEGVKFLYKCTTGMMVDNQYGCIMADEMGLGKTLQCIALMWTLLKQSPHAS 276
Query: 242 --SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR------- 292
+ ++ CPA L +WA EL +WL + + + G L R R
Sbjct: 277 RPTIDKCIIACPASLVKNWANELAKWLGKDTISALA-IDGKGGKAEMLERVARWVAASGR 335
Query: 293 -----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347
V+++SY L L + LL+ DE H + + SE + + + ++ VK
Sbjct: 336 NVSQPVMIVSYETLRTLAAHLQNCPIGLLLCDEGHRL----KNSESQTFQVLNEL--NVK 389
Query: 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407
R V+LSGTP + + F +N P LG +K DF K + + ++G
Sbjct: 390 RRVILSGTPIQNDLSEYFSLLNFANPNFLG-SKNDFRKNFENA-IIRGRDADASDAIKAA 447
Query: 408 V--RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLKRSEIVS 453
+L+EL L+ + + IRR L LP K Q++ RL + EI +
Sbjct: 448 CDKKLKELGDLVTKFI-IRRTNDLLSKYLPVKYEQVVFCGLSPLQLSLYRLFISSPEIQA 506
Query: 454 A-----KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI-AKLSGFR- 506
+ IN +K + P+ D D +L Y G AK G R
Sbjct: 507 LLRGTDSQPLKAINILKKLCNH---PELLDLPGDLRGSDKLLPEEYIGAGANAKGRGGRN 563
Query: 507 -----EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
EW V+ + N +K+++ +++ + LD ++ + KG G+ R+D
Sbjct: 564 QVVHCEWSGKFVVLERFLHRIRTETN---DKIVLISNYTQTLDLFEKLLRTKGYGYFRLD 620
Query: 562 GNTLPRDRQSAVHSFQLSNEVK--IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
G RQ V F + E K I ++ AGG G++ A ++ + +P+ QA
Sbjct: 621 GTMTINKRQKLVDQFN-NPEGKEFIFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQA 679
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSY 679
R R GQ +Y F T +E +Q S+ + K D + +++ +
Sbjct: 680 LARVWRDGQKKECFVYRFITTGTIEEKIFQRQASKQSLSSAVVDEKEDVERHFSIDSLRK 739
Query: 680 L 680
L
Sbjct: 740 L 740
>gi|304389525|ref|ZP_07371488.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327335|gb|EFL94570.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 988
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 218/515 (42%), Gaps = 95/515 (18%)
Query: 170 TGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR---GGRCLIADEMG 226
+G W EH +++VD P +Q +G + + R G ++AD+MG
Sbjct: 491 SGDW-----EHAVNKLVDPPEVSTPALARGTWRGYQEDGFHWMMARATAGLGGILADDMG 545
Query: 227 LGKTLQAIAIAAC---------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV 277
LGKT+Q +A+ A +AG++ V+ PA L +W E+ RW P D+HL
Sbjct: 546 LGKTMQMLAVIAGQKQQLMDSPANAAGAVFVIVPASLMGTWEEQASRWFP-----DLHLY 600
Query: 278 FGHRNNPVHLTRFPRV---------VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
+ + RV V+ +YT+ Q ++ L+ DE+ V+
Sbjct: 601 AQKTSVGKVAADWERVAREVKQADLVLTTYTLARMDIDFWQTQSFSGLVFDEAQFVKNPS 660
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
+ V+ + K L+GTP + D++ +++ P +L F + +
Sbjct: 661 TATHKALVRL------RAKWAFALTGTPIENTATDLWSIMSLTVPTVLPSLSV-FTRRFA 713
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR 448
+ D +G EL+ + ++RR K + +LP K QI+ + L+
Sbjct: 714 ---------AEALSD--RGEAAAELSDRVA-PFLLRRTKDSVAQELPEKIEQIVSIDLEP 761
Query: 449 SE-------IVSAKAAVGVINDSEKDATNDKTPK----------DSDEHDDSGACCRLGK 491
++ + +A+A V N + T D H+D K
Sbjct: 762 AQRTWYAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGA------K 815
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS-NKMIIFAHHLKVLDGVQEFI 550
++Y + L G R+ D ++NPR ++ ++F+ L ++E +
Sbjct: 816 VTYL---LQTLEGLRD---------------DSNLNPRQRHQALVFSQFTSFLAILRERL 857
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+ GI + +DG + RDRQ V FQ + EV + +I + AGG GL+ + A V +
Sbjct: 858 DQAGIDYAYLDGTSRDRDRQ--VARFQ-NGEVDVFLISLKAGGFGLNLTQADYVFLTDPW 914
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P+ QA DRAHR GQ VN+Y A DT ++
Sbjct: 915 WNPAAEAQAVDRAHRLGQKRFVNVYRLVATDTIEQ 949
>gi|392598126|gb|EIW87448.1| hypothetical protein CONPUDRAFT_87220 [Coniophora puteana
RWD-64-598 SS2]
Length = 1098
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 119/489 (24%), Positives = 225/489 (46%), Gaps = 51/489 (10%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSI 246
P + + +QL+G+ + + G ++ADEMGLGKTLQ I+ +AG
Sbjct: 192 PSYIHGTMRAYQLQGLNWMVSLHHNGLNGILADEMGLGKTLQTISFLGYLRHHRNTAGPH 251
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR---FPR---VVVISYTM 300
L+V P +WA E W P +I ++ G + + P+ V + SY +
Sbjct: 252 LIVVPKSTLQNWAREFNNWTP---DVNIVVLTGSKEERAEIIANRLIPQDFDVCITSYEI 308
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD--VAAKVKR-IVLLSGTPS 357
+ ++ + + +++DE+H ++ V ++L V + + R +L++GTP
Sbjct: 309 CLIEKSALKKFSFEYIVIDEAHRIK---------NVDSILSQIVRSFISRGRLLITGTPL 359
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV--QGYQG-QLFQDFSKGVRLEELN 414
+ ++F +N + P + Y D+ + QG +G + +D S+ V +E L+
Sbjct: 360 QNNLKELFALLNFICPEIF--------TDYADLDSFLHQGDEGAENEEDKSRKV-VEALH 410
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
+L+ ++RR+K + L PK+ I + + +E+ + + + + DA N T
Sbjct: 411 KILR-PFLLRRVKADVEKNLLPKKE--INIYVGLTEM--QRKWYRSVLEKDIDAVNGLTG 465
Query: 475 KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VNPR 529
K + +L K+S + + +I A +D + +
Sbjct: 466 KKEGKTRLMNMVMQLRKVSCHPYLFDGAEPGPPYTTDEHLIQNCGKMAILDKLLKSLKEK 525
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
++++IF+ +VLD ++++ +G + RIDG T DR A+ + + K +
Sbjct: 526 GSRVLIFSQMSRVLDILEDYSLFRGYKYCRIDGGTAHDDRIVAIDEYNKPDSEKFLFLLT 585
Query: 590 T-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
T AGG+G++ +SA V+ + +P LQA DRAHR GQT V ++ F +DT +E
Sbjct: 586 TRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQTKQVYVFRFITEDTVEERML 645
Query: 649 QNLNKSLRC 657
+ + LR
Sbjct: 646 ERAAQKLRL 654
>gi|383456088|ref|YP_005370077.1| SNF2/helicase domain-containing protein [Corallococcus coralloides
DSM 2259]
gi|380735185|gb|AFE11187.1| SNF2/helicase domain-containing protein [Corallococcus coralloides
DSM 2259]
Length = 1188
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/495 (24%), Positives = 223/495 (45%), Gaps = 58/495 (11%)
Query: 188 EMIGKLPKSLLDVILPFQLEGVRFGLR-----RGGRCLIADEMGLGKTLQAIAIAACFIS 242
E+ ++P +L + +QLEG R+ R GG ++AD+MGLGKT+QA+A+
Sbjct: 703 ELKPRVPATLKTELRDYQLEGFRWLTRLASWNAGG--VLADDMGLGKTVQALAVLLERAK 760
Query: 243 AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF-PR-VVVISYTM 300
G LV+ P + +W +E +R+ P + L + L R PR V+VISY +
Sbjct: 761 HGPALVLAPTSVAFNWRDEAKRFAPSL---KVTLFSDSEDRGGTLERLGPRDVLVISYGL 817
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
L R + + + ++ ++ DE+ ++ + + +A + K LSGTP +
Sbjct: 818 LVRDIERLAARRFSTIVFDEAQALK----NASTQRFRAARALQGDFK--FALSGTPMENH 871
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK-- 418
+++ +++PGLLG +++ ++ + K V L +
Sbjct: 872 LGELWALFGIVFPGLLG--------------SLEAFRSRFAMPIEKQVDPTAGPALARVL 917
Query: 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-IVSAKAAVGVINDSEKDATNDKTPKDS 477
Q ++RR K + QLPP+ + ++L E + A + ++D E + K +
Sbjct: 918 QPFLLRRTKAQVEAQLPPRTDVHVPVILSPPEWTLYEDARLAALSDLEIRKSKMKDQERR 977
Query: 478 DE-------HDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
E + RL + +L +KL F E + ++
Sbjct: 978 IEVLAALTRLRLLASHPRLYDKA-SKLESSKLERFMELIQ--------------ELREEG 1022
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
++ ++F+ L V+E + +G+ + +DG+T +R V +FQ + + +I +
Sbjct: 1023 HRALVFSQFTSHLALVREVLDAQGVAYEYLDGSTPAGERAERVRAFQ-EGDAPLFLISLK 1081
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650
AGG GL+ ++A +V+ L+ +P++ QA DRAHR GQ V +Y A+ T +E
Sbjct: 1082 AGGFGLNLTAATSVIHLDPWWNPAVEDQASDRAHRIGQQRPVTVYRLVARGTIEEQMLSL 1141
Query: 651 LNKSLRCVSSATNGK 665
+ V+ GK
Sbjct: 1142 HEQKRALVAGVLEGK 1156
>gi|315655316|ref|ZP_07908216.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490256|gb|EFU79881.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 988
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 129/522 (24%), Positives = 218/522 (41%), Gaps = 109/522 (20%)
Query: 170 TGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR---GGRCLIADEMG 226
+G W EH +++VD P +Q +G R+ + R G ++AD+MG
Sbjct: 491 SGDW-----EHAVNKLVDPPEVSTPALAQGTWRGYQEDGFRWMMARATAGLGGILADDMG 545
Query: 227 LGKTLQAIAIAAC---------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHL- 276
LGKT+Q +A+ A +AG++ VV PA L +W E+ RW P D+HL
Sbjct: 546 LGKTMQMLAVIAGQKRQLIDNPATAAGAVFVVVPASLMGTWEEQTSRWFP-----DLHLY 600
Query: 277 --------VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
V H + +V+ +YT+ Q ++ L+ DE+ V+
Sbjct: 601 AQKTSVGKVAADWERVAHEVKQADLVLTTYTLARMDIDFWQTQSFSGLVFDEAQFVKNPS 660
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
+ KA++ + AK L+GTP + D++ +++ P +L F + +
Sbjct: 661 TATH----KALVRLHAKWA--FALTGTPIENTATDLWSIMSLTVPTVLPSLSV-FTRRFA 713
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLK- 447
+G+ + S V ++RR K + +LP K QI+ + L+
Sbjct: 714 --AEALSDRGEAAAELSDRV----------APFLLRRTKDSVAQELPEKIEQIVSIDLEP 761
Query: 448 -----------------------RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
R I++A + + S K D H+D
Sbjct: 762 AQRTWYAKYLTAARAQAADANSPRINILTALTRLRQLALSAK-------LIDPQAHEDG- 813
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS-NKMIIFAHHLKVL 543
K++Y + L G R+ D ++NPR ++ ++F+ L
Sbjct: 814 -----AKVTYL---LQTLEGLRD---------------DSNLNPRQRHQALVFSQFTSFL 850
Query: 544 DGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN 603
++E + + GI + +DG + RDRQ V FQ + EV + +I + AGG GL+ + A
Sbjct: 851 AILRERLDQAGIDYAYLDGTSRDRDRQ--VARFQ-NGEVDVFLISLKAGGFGLNLTQADY 907
Query: 604 VVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
V + +P+ QA DRAHR GQ VN+Y A DT ++
Sbjct: 908 VFLTDPWWNPAAEAQAVDRAHRLGQKRFVNVYRLVATDTIEQ 949
>gi|298346771|ref|YP_003719458.1| helicase [Mobiluncus curtisii ATCC 43063]
gi|298236832|gb|ADI67964.1| helicase [Mobiluncus curtisii ATCC 43063]
Length = 988
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 216/515 (41%), Gaps = 95/515 (18%)
Query: 170 TGRWNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR---GGRCLIADEMG 226
+G W EH +++VD P +Q +G + + R G ++AD+MG
Sbjct: 491 SGDW-----EHAVNKLVDPPEVSTPALARGTWRGYQEDGFHWMMARATAGLGGILADDMG 545
Query: 227 LGKTLQAIAIAAC---------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLV 277
LGKT+Q +A+ A +AG++ V+ PA L +W E+ RW P D+HL
Sbjct: 546 LGKTMQMLAVIAGQKQQLMDSPANAAGAVFVIVPASLMGTWEEQASRWFP-----DLHLY 600
Query: 278 FGHRNNPVHLTRFPRV---------VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328
+ + RV V+ +YT+ Q ++ L+ DE+ V+
Sbjct: 601 AQKTSVGKVAADWERVAREVKQADLVLTTYTLARMDIDFWQTQSFSGLVFDEAQFVKNPS 660
Query: 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
+ V+ + K L+GTP + D++ +++ P +L F + +
Sbjct: 661 TATHKALVRL------RAKWAFALTGTPIENTATDLWSIMSLTVPTVLPSLSV-FTRRFA 713
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKR 448
+G+ + S V ++RR K + +LP K QI+ + L+
Sbjct: 714 --AEALSDRGEAAAELSDRV----------APFLLRRTKDSVAQELPEKIEQIVSIDLEP 761
Query: 449 SE-------IVSAKAAVGVINDSEKDATNDKTPK----------DSDEHDDSGACCRLGK 491
++ + +A+A V N + T D H+D K
Sbjct: 762 AQRTWYAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGA------K 815
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS-NKMIIFAHHLKVLDGVQEFI 550
++Y + L G R+ D ++NPR ++ ++F+ L ++E +
Sbjct: 816 VTYL---LQTLEGLRD---------------DSNLNPRQRHQALVFSQFTSFLAILRERL 857
Query: 551 SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
+ GI + +DG + RDRQ V FQ + EV + +I + AGG GL+ + A V +
Sbjct: 858 DQAGIDYAYLDGTSRDRDRQ--VARFQ-NGEVDVFLISLKAGGFGLNLTQADYVFLTDPW 914
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P+ QA DRAHR GQ VN+Y A DT ++
Sbjct: 915 WNPAAEAQAVDRAHRLGQKRFVNVYRLVATDTIEQ 949
>gi|312794614|ref|YP_004027537.1| SNF2-like protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181754|gb|ADQ41924.1| SNF2-related protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 1108
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/486 (25%), Positives = 229/486 (47%), Gaps = 73/486 (15%)
Query: 186 VDEMIGKLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFIS 242
+++ ++P++L ++ +Q GV++ G ++AD+MGLGKT+Q ++ FIS
Sbjct: 632 IEDTTIEIPENLNRILREYQKVGVKWLSHLYLNGFGGILADDMGLGKTVQVLS----FIS 687
Query: 243 A------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
A G LVV P L +W +E +R+ P + R+ + + +V+
Sbjct: 688 ACKDKLNGPCLVVAPTSLVYNWQQEAKRFTPDLKTVVVDGTPAKRSEIIEKLKDYDIVIT 747
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY++L R + ++++ +VDE+ H++ + S+ +AV + AK L+GTP
Sbjct: 748 SYSLLKRDIDLYKDLEFSVCVVDEAQHIKNPQSFSK----EAVSRINAKC--CFALTGTP 801
Query: 357 ---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-QDFSKGVRLEE 412
+LS + IF + + PG LG + + ++ + Q+ K ++L
Sbjct: 802 IENNLSELWSIF---DFVLPGYLG----------THTRFSERFEKPIVRQNDEKALKL-- 846
Query: 413 LNVLLKQTVMIRRLKQHLLVQLP------------PKRRQIIRLLLKRSEIVSAKAAVGV 460
L ++ V+ RRLK+ +L +LP P++ I +L L KA +
Sbjct: 847 LQKMITPFVL-RRLKKDVLSELPEKIETNLEVSMTPEQENIYKLYL-------LKAREDI 898
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCRLGKIS-YQELGIAKLSGFREWLSIHPVIAESD 519
N+ E+ K RL +I + +L + G L + I E
Sbjct: 899 KNEIEQKGFEKSKIKIF------SILTRLRQICCHPKLFLENYEGSSGKLELFEEILE-- 950
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
DV ++ I+F+ ++L ++E I ++G + +DG+T +R +SF S
Sbjct: 951 -----DVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKSEERIDMANSFN-S 1004
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ ++ +I + AGG GL+ + A V+ +L +P++ QA DRAHR GQ ++V ++
Sbjct: 1005 GQKQVFLISLKAGGFGLNLTGADVVILYDLWWNPAVENQAMDRAHRIGQENSVQVFRLIT 1064
Query: 640 KDTTDE 645
K+T +E
Sbjct: 1065 KNTIEE 1070
>gi|170032260|ref|XP_001844000.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
gi|167872116|gb|EDS35499.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
Length = 821
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 211/489 (43%), Gaps = 75/489 (15%)
Query: 207 EGVRF------GLRRGGR----CLIADEMGLGKTLQAIAIAACFISAGS--------ILV 248
EGV F G++R ++ADEMGLGKTLQ +A+ + G +L+
Sbjct: 233 EGVSFLYECVLGMKREDSEQFGAILADEMGLGKTLQTLALIYTLMKQGPYGQPIVKRVLI 292
Query: 249 VCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-----VVVISYTMLHR 303
V P+ L +W E+ +WL I+ NN L ++ + +++ISY +L +
Sbjct: 293 VTPSSLVDNWDREITKWLK---QERIYTFIVGPNN--KLKKYAQSAHIPILIISYELLAK 347
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ + L++ DE H ++ S ++ VLD +R +LL+GTP + +
Sbjct: 348 QVSELETVKFDLIVCDEGHRLKNSSI-----KIAEVLD-GIDCRRRILLTGTPIQNDLQE 401
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK--GVRLEELNVLLKQTV 421
IN + PGLLG Y K + VQ Q + + RL ELN + +
Sbjct: 402 FHSLINFVNPGLLGT--YSEFKAKYENPIVQSQQPNVLPQLQELGQTRLNELNSI-TSSF 458
Query: 422 MIRRL----------KQHLLVQLPPKRRQ--IIRLLLKRSEI--VSAKAAVGVINDSEKD 467
++RR KQ L++ P Q ++ L LK E SA + +I +K
Sbjct: 459 ILRRTQEVNNSYLPEKQELVIFAHPSELQERLLTLALKHYEQSGTSAITPLQLITILKKI 518
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV------IAESDGA 521
+ +D D S Q L I++L W + P I ES
Sbjct: 519 CNHPSLISTTDSKDPD---------SLQNLLISQLPS---WQHMGPADSGKLAILESLLE 566
Query: 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSN 580
A I+ R K++I ++ K LD + F R+DG T +DR V +F S+
Sbjct: 567 ALIE---RREKVVIVSYFSKTLDMIAGLCEHYNYKFCRLDGATPSQDRGKLVATFNNPSS 623
Query: 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640
++ I ++ AGG+GL+ A +V + +P+ LQA R R GQT V IY
Sbjct: 624 DIFIFLLSAKAGGIGLNLVGASRLVLFDNDWNPASDLQAMSRIWRDGQTRNVFIYRLITA 683
Query: 641 DTTDESHWQ 649
+ +E +Q
Sbjct: 684 FSIEEKIFQ 692
>gi|360043742|emb|CCD81288.1| putative helicase swr1 [Schistosoma mansoni]
Length = 1098
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 130/512 (25%), Positives = 233/512 (45%), Gaps = 79/512 (15%)
Query: 203 PFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---LVVCPAILRL 256
P+QL G+ R ++ADEMGLGKT+QAIA A +G+ L++CP+ +
Sbjct: 491 PYQLVGLNWLRLLHHEQVNGILADEMGLGKTVQAIAFLASLWESGNRGPHLIICPSSTQD 550
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTML---HRLRKSMIEQDW 313
+W EL W P L ++ + + L + + +L + + S IE D
Sbjct: 551 NWQRELSLWCPH-LKVLVYQGSAEQRKAIRLKIYESESQPDFNILLTSYAVGTSAIE-DR 608
Query: 314 ALL--------IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
AL+ I DE+H ++ TS+ + +++ +V+R +LL+GTP + ++
Sbjct: 609 ALMKRINFHYGIFDEAHMLK--NMTSQ--RYRNLMNF--RVQRRLLLTGTPLQNNLLELV 662
Query: 366 HQINMLWP-------GLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
++ + P LL + ++K + Q + + RL + LL
Sbjct: 663 SLLSFVMPEMFLKSTDLLKRIFQIYSKPMNSREEDQSANNSPIRSSFEEERLVQAKSLL- 721
Query: 419 QTVMIRRLKQHLLVQLPPKRRQII-----------------RLLLKRSEIVSAKAAVGVI 461
Q +RRLK +L QLPPK +++ RLL +S S ++ ++
Sbjct: 722 QPFCLRRLKSQVLGQLPPKTSEVVLVAMTKTQATHYHDLVKRLLTSKSISESLQSPCNMV 781
Query: 462 NDSEKDATN----------DKTPKDSDE--HDDSGACCRLGKISYQEL------GIAKLS 503
K A + D +D E H D + Y++L I KL
Sbjct: 782 TALRKAANHQALFSGLAYTDSNLRDIAESLHLDPSHSNADPNLIYEDLLAMSDHQIHKLC 841
Query: 504 GFREWLSIHPVIAES--DGAADI----DVNPR----SNKMIIFAHHLKVLDGVQEFISEK 553
F E LS + + ES G+ I D P+ ++++IF+ + +LD ++EF+
Sbjct: 842 QFYETLSSYTLSPESIISGSGKIQWLNDNLPKLVSEGHRILIFSQFVIMLDILEEFLRIT 901
Query: 554 GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
++R+DG+T +RQ+ + F S+ +++ ++ AGG+G++ + A V+ ++ +P
Sbjct: 902 NRRYIRMDGSTPVSERQTLIDRFN-SSSIEVFLLSTRAGGLGINLTGADTVIIHDIDFNP 960
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
QAEDR HR GQ + V++ ++ T +E
Sbjct: 961 YNDRQAEDRCHRLGQKNPVHVIRLISEGTLEE 992
>gi|42523166|ref|NP_968546.1| helicase/SNF2 family protein [Bdellovibrio bacteriovorus HD100]
gi|39575371|emb|CAE79539.1| putative helicase/SNF2 family domain protein [Bdellovibrio
bacteriovorus HD100]
Length = 1330
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 223/477 (46%), Gaps = 66/477 (13%)
Query: 192 KLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---A 243
KLP S+ + +Q EGV+ F LR G L+AD+MGLGKTLQA++ +
Sbjct: 852 KLPGSVKAELKTYQHEGVQWLLDLFTLRMG--ALLADDMGLGKTLQALSFLDLLRTREQL 909
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL-TRFPRVVVISYTMLH 302
G +LVV P+ L +W E+ ++ P LP +I H L + P VVV +Y +L
Sbjct: 910 GQVLVVVPSSLVYNWESEVAKFTP-ELPFEIFTSKDHDRLGKRLEAKEPLVVVTTYGLLM 968
Query: 303 RLRKSMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
+ + + +W +LI DE+ +++ +KRTS + A + L+GTP +
Sbjct: 969 ENDEFLSQYNWNVLIFDEAQNLKNITAKRTSSARMLNARFKMC--------LTGTPMENH 1020
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
+ + ++++ PG LGK DF + + + + V L +D +E+L + +
Sbjct: 1021 FGEFYSLLDLVVPGCLGKYD-DFRRHFVNTEVV------LLED------VEDLKLKTRPL 1067
Query: 421 VMIRRLKQHLLVQLPPKRRQIIRLLL--KRSEIVS--AKAAVGVINDSEKDATNDKTP-- 474
+M RR K+ +L QLP K+ + + K+ +I A A I D+ ++A ++
Sbjct: 1068 IM-RRTKKEILDQLPEKQETKVSIAFEDKQKQIYRDIAIAYNQRIQDTIREAGESQSQLQ 1126
Query: 475 ------KDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ D GA L ++ Y++ KL + S+ +I + A
Sbjct: 1127 MLTALLRLRQACSDPGA---LPEVKYEKTP-PKLEALMD--SLQEIIESGESA------- 1173
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
++F L+ L+ ++ + GI + G + RQ + F + + ++
Sbjct: 1174 -----LVFTQFLQTLERTEKLLKAVGIPVFVLHGAIPTKQRQKILKDFNETKGGAVLVMT 1228
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ GGVGL+ + A V LE +PS+ QA DRAHR GQ AV ++ + ++ +E
Sbjct: 1229 LKTGGVGLNLTKASYVFHLEPWWNPSVENQATDRAHRLGQRKAVQVFRYIMHESLEE 1285
>gi|443895241|dbj|GAC72587.1| chromatin remodeling complex SWI/SNF, component SWI2 [Pseudozyma
antarctica T-34]
Length = 1509
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 218/474 (45%), Gaps = 49/474 (10%)
Query: 204 FQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAIL 254
+Q++G++ + R G ++ADEMGLGKT+Q I++ + G LV+ P
Sbjct: 614 YQMKGLQWMISLYNNRLNG--ILADEMGLGKTIQTISLITFLMEYKKQNGPFLVIVPLST 671
Query: 255 RLSWAEELERWLPFCLPADIHLVF-GHRNNPVHLTRFPR-----VVVISYTMLHRLRKSM 308
+W E +W P LV+ G N LT R V++ +Y + + + +
Sbjct: 672 LTNWVNEFNKWAPSV----STLVYKGTPNVRKQLTGRLRSMNFQVLLTTYEYIIKDKHLL 727
Query: 309 IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQI 368
+ W +I+DE H ++ ++ ++ L + +LL+GTP + +++ +
Sbjct: 728 GKIKWVHMIIDEGHRMKNTQ-----SKLTITLTQFYTSRYRLLLTGTPLQNNLPELWALL 782
Query: 369 NMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL-EELNVLLKQTVMIRRLK 427
N + P + K F + + T G +G + + + + + + L+ +L+ ++RRLK
Sbjct: 783 NFVLPRIFNSVK-SFDEWFNTPFTNTGNEGGMMLNEEEALLIIKRLHKVLR-PFLLRRLK 840
Query: 428 QHLLVQLPPKRRQIIRLLLK--RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+ + +LP K ++I+ + + ++ +I E ++T K K A
Sbjct: 841 KDVASELPDKVEKVIKCKMSALQLKLYQQMKKHKMILSGEDNSTAGKKAKPQGIRGLQNA 900
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPV------IAESDGAADI------DVNPRSNKM 533
+L KI ++ L+I+P + S G ++ + +++
Sbjct: 901 IMQLRKICNHPYVFEQVE-----LAINPTKENGPDLYRSAGKFELLDRLLPKLFATKHRV 955
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAG 592
+IF ++D +++F+ +G ++R+DG+T P DR + F +E + I+ AG
Sbjct: 956 LIFFQMTAIMDIMEDFLRYRGFKYLRLDGSTKPDDRSQLLKMFNAPGSEYFVFILSTRAG 1015
Query: 593 GVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
G+GL+ SA V+ + +P LQA+DRAHR GQ V I + + +E+
Sbjct: 1016 GLGLNLQSADTVIIYDSDWNPHQDLQAQDRAHRIGQKMEVRILRLVTEKSVEET 1069
>gi|300121090|emb|CBK21472.2| unnamed protein product [Blastocystis hominis]
Length = 1183
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 125/554 (22%), Positives = 237/554 (42%), Gaps = 90/554 (16%)
Query: 188 EMIGKLPKSLL-----DVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC 239
E + + KS+L + P+Q EG R+ +G ++ADEMGLGKT+Q I++
Sbjct: 127 ERVAQGEKSILHFKDNKTLRPYQWEGFRWLKDNYNQGKNSILADEMGLGKTIQVISLMEH 186
Query: 240 FI----SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN------------ 283
I + ILV+ P W E+E W +++V H N
Sbjct: 187 IIHNMETQQPILVIAPLSTLGFWRREIESW------TTLNVVMYHDNEGGKDIRHLIERY 240
Query: 284 PVHLTR--------FP----RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
+ TR FP +++ +Y + + + W+L++VDE+ ++ +
Sbjct: 241 EFYYTRKQLPVPPPFPVYKFDILLTTYEIANTDVDELRNIRWSLVVVDEAQRMK-----N 295
Query: 332 EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVK 391
+ +++ L ++ VLL+GTP + +++ +N + P + +F + Y D+
Sbjct: 296 KSGKLQQTLH-QIHWQQCVLLTGTPLQNNMLELWTLLNFVAPQTFPSST-EFLQQYGDL- 352
Query: 392 TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451
+ S+ L+ L V T ++RRLK+ + +PPK II + L +
Sbjct: 353 ----------HNQSQVASLQRLLV----TYVLRRLKEDVEDSIPPKEETIIDIELTTKQK 398
Query: 452 VSAKAAV---------GVI---NDSEKDATNDKTPKDSDEHDDSGACCR-------LGKI 492
+A G I N + + N + P+ CC + ++
Sbjct: 399 TFYRAIYDHNRDFFIHGYIRSGNGVSRVSGNSRGPRLVSMEMQFRKCCNHPYMLEGVEEM 458
Query: 493 SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN-----PRSNKMIIFAHHLKVLDGVQ 547
+EL A+ F++ L+ HP++ S + ++++IF+ +LD ++
Sbjct: 459 ESEELKKAEEMEFKD-LTKHPLVQSSGKMVLLHKLLGKLKAEGHRVLIFSQFTTMLDILE 517
Query: 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDFSSAQNVVF 606
++ G+ + RIDG+ R+ A+ +F N ++ AGGVG+ ++A V+
Sbjct: 518 RYLRLAGLSYTRIDGSVRGNAREEAIRTFNDENSNMFCFLLSTRAGGVGITLTTADTVII 577
Query: 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKY 666
+ +P +QA+ R HR GQT AV +Y + T + + +Q + L +
Sbjct: 578 FDSDWNPQNDVQAQARCHRIGQTKAVRVYRLITRGTYEAAMFQRASLKLGLEQAVMANSS 637
Query: 667 DALQEIAVEGVSYL 680
L+ I+ + V L
Sbjct: 638 TWLKNISADVVETL 651
>gi|295103966|emb|CBL01510.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
prausnitzii SL3/3]
Length = 1098
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 119/460 (25%), Positives = 206/460 (44%), Gaps = 41/460 (8%)
Query: 194 PKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS--- 245
P SL + +Q +G R+ G GG ++AD+MGLGKT+Q ++ G
Sbjct: 632 PLSLQKTLRKYQRDGYRWLRTLDGYGMGG--ILADDMGLGKTVQVLSYLLAMKEGGQQLP 689
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
L+VCPA L L+W EE +++ P + HR V +V+ SY +L R
Sbjct: 690 SLIVCPASLVLNWQEECQKFTPQLQSVAMDGDAAHRAALVDGWAQADIVITSYDLLRRDE 749
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
K Q + I+DE+ + + ++ KAV V ++V+ L+GTP +R +++
Sbjct: 750 KLYAGQSFYACILDEAQAI----KNHTTQKYKAVCRVNSRVR--FALTGTPVENRLGELW 803
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
+ L PG L KT+C ++ + QD + LN ++RR
Sbjct: 804 SIFSFLMPGYLPP-----YKTFC-----ARFEKPIVQDEDANA-VRRLNQ-FTGPFILRR 851
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485
+K +L +LPPK + R+ L+ + AA V++ EK + K D+
Sbjct: 852 MKSEVLRELPPKTENVRRVELETEQRKLYLAA--VVDAREK----LRAAKPEDKMTVFAV 905
Query: 486 CCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
RL +I +A W + E+ + +++++F+ +L+
Sbjct: 906 LMRLREICCDPRLVAD-----NWTGSSAKL-EACLELVTEAVAGGHRILLFSQFTSMLEL 959
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
+ + + E G+ + G+T R V F E + +I + AGG GL+ ++A V+
Sbjct: 960 LAKRLDEAGVSHFTLQGSTPKPVRAEQVRRFN-QGEADVFLISLRAGGTGLNLTAADIVI 1018
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + + QA DRA+R GQ + V +Y A+DT +E
Sbjct: 1019 HYDPWWNLAAQNQATDRAYRIGQRNPVQVYRLIAQDTIEE 1058
>gi|170041242|ref|XP_001848380.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
gi|167864826|gb|EDS28209.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
Length = 787
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 131/516 (25%), Positives = 227/516 (43%), Gaps = 75/516 (14%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRFGL-----RRGG--RCLIADEMGLGKTLQAIAI- 236
VVD ++G +++ P Q EGVRF +RG C++ADEMGLGKTLQ I +
Sbjct: 130 VVDPLLG-------NILRPHQREGVRFMYECVTGKRGDFQGCIMADEMGLGKTLQCITLL 182
Query: 237 -------AACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-HLT 288
C ++VCP+ L +W +E +WL C + + G + L
Sbjct: 183 WTLLRQSPDCKPEINKAVIVCPSSLVKNWYKEFGKWLG-CRVNCLSIDGGSKEQTTKQLE 241
Query: 289 RF---------PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339
+F V++ISY + + ++ DE H + + E +A+
Sbjct: 242 QFMANQSARQGTPVLIISYETFRLYAGILNNSEVGAVLCDEGHRL----KNCENLTYQAL 297
Query: 340 LDVAAKVKRIVLLSGTP---SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
+ + K KR VLLSGTP L+ Y + H +N PG+LG + +F + + + ++G
Sbjct: 298 MGL--KTKRRVLLSGTPIQNDLTEYYSLLHFVN---PGMLGSSN-EFRRQF-ENPILRGQ 350
Query: 397 QGQLFQDFSKGV--RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSA 454
+ + RL+EL+ L+ + MIRR L LP K ++ +K +++ +
Sbjct: 351 DANSTESEREKATERLQELSALVNR-CMIRRTSSLLTKYLPIKFEMVV--CVKMTDVQTE 407
Query: 455 KAAVGVINDSEKDATNDKTPKDSDEHDDSG-----ACCRLGKISYQELGIAKLSGFREWL 509
+ +DS + + +K+ + S C + Y+++ + GF E
Sbjct: 408 LYKSFLQSDSIRRSVLEKSEVKASLTALSNITALKKLCNHPDLVYEKIK-ERAEGFEEAY 466
Query: 510 SIHP-------VIAESDGA--------ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
I P V E G A I +N ++K+++ +++ + LD ++ ++G
Sbjct: 467 KILPANYSAKEVRPEFGGKLMVLDCMLASIKMNT-NDKIVLVSNYTQTLDLFEKLCRKRG 525
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
G+VR+DG + R V F + + I ++ AGG GL+ A +V + +P
Sbjct: 526 YGYVRLDGTMTIKKRGKVVDEFNKPDSKEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 585
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
+ QA R R GQ IY A + +E +Q
Sbjct: 586 ANDEQAMARVWRDGQKKPCFIYRLLATGSIEEKIFQ 621
>gi|432097421|gb|ELK27660.1| Zinc finger Ran-binding domain-containing protein 3 [Myotis
davidii]
Length = 319
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%)
Query: 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589
S K ++FAHHL +L E + E +VRIDG+ +R V+ FQ E ++AI+ I
Sbjct: 47 SLKFLVFAHHLLMLQACTEAVIENKTRYVRIDGSVPSSERIHLVNQFQKDPETRVAILSI 106
Query: 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
A G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W
Sbjct: 107 QAAGQGLTFTAATHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 166
Query: 650 NLNKSLRCVSSATNGKYDALQ 670
LN+ ++ S NG+ + LQ
Sbjct: 167 MLNRKVQVTGSTLNGRKERLQ 187
>gi|343429051|emb|CBQ72625.1| probable RAD54-DNA-dependent ATPase of the Snf2p family
[Sporisorium reilianum SRZ2]
Length = 871
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 133/550 (24%), Positives = 230/550 (41%), Gaps = 84/550 (15%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAI 236
V+D +GK V+ P Q+EGV+F R C++ADEMGLGKTLQ I +
Sbjct: 278 VIDPRLGK-------VLRPHQVEGVKFLYRCTTGLVVENAFGCIMADEMGLGKTLQCITL 330
Query: 237 AACFISAGSI---------LVVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPVH 286
+ I ++VCP+ L +WA EL +WL P ++ L ++ +
Sbjct: 331 MWTLLKQSPIPKKTTIDKCIIVCPSSLVRNWANELVKWLGAAAPGNLALDGKLSKDEMIE 390
Query: 287 LTR----------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
TR V+++SY L L++ + + LL+ DE H + + ++
Sbjct: 391 ATRRWCNASGRAITQPVMIVSYETLRNLQEELGNTEVGLLLCDEGHRL----KNADSLTF 446
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
+A+ + KV+R V+LSGTP + + F +N P LLG ++ +F K + ++ ++G
Sbjct: 447 QALTQI--KVRRRVILSGTPIQNDLSEYFALLNFANPELLG-SRVEFRKNF-EIAILKGR 502
Query: 397 QGQLF--QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------ 442
+ Q +L +L+ L+ + + IRR L LP K ++
Sbjct: 503 DAEATDKQQQEANEKLSQLSALVSRFI-IRRTNDLLSKYLPVKYEHVVFCKMSPFQLDLY 561
Query: 443 RLLLKRSEI--------VSAKAAVGVINDSEKDATNDKTPKD---SDEHDDSGACCRLGK 491
RL ++ EI A+G++ P D S+E+ G R +
Sbjct: 562 RLFIRSPEIKKLLRGTGSQPLKAIGILKKLCNHPDLLDLPSDLEGSEEYFPEGYTPRDRR 621
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
EL K+ + +L + A ++ +K+++ +++ + LD +
Sbjct: 622 QVNPELS-GKMMVLQRFLET--IRATTN-----------DKIVLISNYTQTLDVFERMCR 667
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
G R+DG RQ V F + I ++ AGG GL+ A +V +
Sbjct: 668 ANRWGMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRLVLFDPD 727
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+P+ QA R R GQ + +Y F A + +E Q + S + DA +
Sbjct: 728 WNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCVVDEAQDAAR 787
Query: 671 EIAVEGVSYL 680
+ E + L
Sbjct: 788 HFSGEDLRAL 797
>gi|328720228|ref|XP_001950291.2| PREDICTED: lymphoid-specific helicase-like [Acyrthosiphon pisum]
Length = 759
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 127/516 (24%), Positives = 216/516 (41%), Gaps = 101/516 (19%)
Query: 205 QLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRLS 257
Q+EG +R G ++ADEMGLGKT+Q IA CF+ G LV+ P +
Sbjct: 178 QIEGLLWIRTLYENGLNGILADEMGLGKTVQTIAF-YCFLLEMGITGPFLVIAPLSTIPN 236
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--------------VVVISYTMLHR 303
W E ++ P LP V H + P+ VV+ +Y ++ R
Sbjct: 237 WLSEFSKFSP-KLPT----VLYHGTEIERIGLRPKFKNTQKVNNLNCQPVVITTYDVVRR 291
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363
+ DW + +DE V+ + S + + K ++L+GTP + +
Sbjct: 292 DITYLKNIDWKFITIDEGQKVKNA--NSHISKCMRAFNCTNK----LILTGTPIQNDMSE 345
Query: 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL----EELNVLLK- 418
++ +N L P + + + DF + + F K V + E L+++LK
Sbjct: 346 LWSLLNWLMPKIFDQLE-DFNSWFV--------IDKFFDSNDKIVNMVKKDELLDIILKI 396
Query: 419 -QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
+ ++RR K + LPPK+ +I L ++ + +N + N K KD+
Sbjct: 397 LKPFILRREKNETDLNLPPKKEIVIYAPLTETQ---KELYEATLNKQMEILLNKK--KDT 451
Query: 478 DE---HDDSGACCRLGKISYQELGIAKL-------------------SGFREWLSI--HP 513
++ +S C I Y +L ++ + F + I HP
Sbjct: 452 EDLILEVNSKRRCVESIIKYTDLNAIRVNVPEIDPQVKNMAISVHMQNPFIQLKKIVNHP 511
Query: 514 VI-------AESDGAADIDVNPRS----------NKMIIFAHHL-------KVLDGVQEF 549
+ E+ D ++ S K+ I H + +++D ++EF
Sbjct: 512 YLVQMPLIPGENKLLVDENITKVSGKFQLLDAMLTKLKILGHKVLLFSTMTQLMDVIEEF 571
Query: 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609
+ + F R+DG + R A+ +F E I +I AGG+GL+ +SA V+ +
Sbjct: 572 LMFRKFSFTRLDGTMSIQLRVDAMTTFNSDPECFIMMISTRAGGLGLNLTSADTVILFDS 631
Query: 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P + LQA+DR HR GQT V +Y FC+K+T DE
Sbjct: 632 DWNPQVDLQAQDRCHRMGQTKPVVVYRFCSKNTIDE 667
>gi|405122403|gb|AFR97170.1| transcription regulator [Cryptococcus neoformans var. grubii H99]
Length = 1523
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 130/540 (24%), Positives = 233/540 (43%), Gaps = 76/540 (14%)
Query: 135 YNPVLTCLKNSAGIE-VEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL 193
Y V+ C GIE T +S+SID RP + + I +
Sbjct: 402 YEDVMECQGAKEGIEEFHQRQARTTTPARSISYSIDN------RPTY-------QKIAEN 448
Query: 194 PKSLL--DVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----G 244
P L + PFQL G+ + +G ++ADEMGLGKT+Q+++ + G
Sbjct: 449 PPYLACGGALKPFQLTGLNWLAYVWSKGENGILADEMGLGKTVQSVSFLSYLFHVQHQYG 508
Query: 245 SILVVCPAILRLSWAEELERWLP----FCLPADIH---LVFGHRNNPVHLTRFPRVVVIS 297
LVV P +W + ++W P C ++ P+ +F V++ +
Sbjct: 509 PFLVVVPLSTISAWQAQFKKWAPDLNVICYMGSARSRDVIRQFEFGPLKNLKF-NVLLTT 567
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
Y + + R+ + + W +L VDE+H R S+ E A+K+ L++GTP
Sbjct: 568 YEFILKDRQDLQQIKWQVLAVDEAH--RLKNHESQLYEALKSFWSASKL----LITGTPL 621
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
+ ++ ++ L P K+ A + D+ QG +D +
Sbjct: 622 QNNVKELLALMHFLMP-----EKFQLANDF-DLNDASEDQGAKIKDLHDKL--------- 666
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE------IVSAKAAV----GVINDSEKD 467
T+M+RRLK+ ++ +LP K +I+R+ + + I++ AV G S +
Sbjct: 667 -TTLMLRRLKKDVVKELPTKSERILRVEMSAMQTHYYKNILTKNFAVLSKGGTQQVSLMN 725
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
+ + + GA R + G+ SG L + +SDG
Sbjct: 726 VAMELKKASNHPYLFEGAEDRNKPANEILRGLVMNSGKMVCLDMLLSRLKSDG------- 778
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIA- 585
++++IF+ +++LD + ++++ +G R+DG T+P D R+ ++ F A
Sbjct: 779 ---HRVLIFSQMVRLLDIISDYMTARGYVHQRLDG-TVPSDVRKKSIEHFNAPGSPDFAF 834
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ AGG+G++ +A V+ + +P LQA RAHR GQ V+I+ +K T +E
Sbjct: 835 LLSTRAGGLGINLETADTVIIFDSDYNPQNDLQAMARAHRIGQQRHVSIFRLVSKGTIEE 894
>gi|363421001|ref|ZP_09309090.1| helicase [Rhodococcus pyridinivorans AK37]
gi|359734736|gb|EHK83704.1| helicase [Rhodococcus pyridinivorans AK37]
Length = 1072
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 122/481 (25%), Positives = 210/481 (43%), Gaps = 77/481 (16%)
Query: 192 KLPKSLLDVILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----- 243
++PK++ + P QL+G R F G ++AD+MGLGKTLQ++A+ C A
Sbjct: 603 RVPKAVQATLRPDQLDGFRWLTFLWTHGLGGILADDMGLGKTLQSLALI-CHARAKRPAD 661
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPV-HLTRFPRVVVISYTMLH 302
+L+V P + +WA E R+ P I R + L VVV SYT+L
Sbjct: 662 APVLIVAPTSVVPNWATEARRFAPDLNVVAITETSAKRGVSLGDLLDGIDVVVTSYTLLR 721
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+E+ W++L++DE+ V+ + + + V + A +K V ++GTP +
Sbjct: 722 LDIDEYLERAWSMLLLDEAQFVKNHRAKA----YQCVRQIEAPLK--VAITGTPMENNLM 775
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV- 421
+++ +++ PGL + Q Y + + S EL V L+Q +
Sbjct: 776 ELWSLLSITAPGL-----------FPHPTKFQDYYRKPIESGSH----PELLVQLRQRIK 820
Query: 422 --MIRRLKQHLLVQLPPKRRQII--------RLLLKRSEIVSAKAAVGVINDSEKDATN- 470
M+RR K+ + LP K+ Q++ R + R + +G+++D + +
Sbjct: 821 PLMLRRTKEQVATDLPEKQEQVLEVELTPKHRAVYDRQLQRERQKILGLVDDLDNNRFTI 880
Query: 471 -------DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD 523
+ D DD+ + ++G AK+ E L
Sbjct: 881 LRSLTLLRQMSLDPGLVDDA----------HNKVGSAKIDALLEQLD------------- 917
Query: 524 IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583
DV ++ ++F+ LD V+ + GI ++ +DG T R R + F+ S
Sbjct: 918 -DVIVGGHRALVFSQFTGFLDRVRARLDAAGIDYLYLDGKT--RKRGKVLEEFK-SGAAP 973
Query: 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643
+ +I + AGG GL+ A L+ +P+ QA DR HR GQT V +Y A+DT
Sbjct: 974 VFLISLKAGGFGLNLVEADYCFLLDPWWNPATEAQAVDRTHRIGQTRNVMVYRLIARDTI 1033
Query: 644 D 644
+
Sbjct: 1034 E 1034
>gi|440297057|gb|ELP89787.1| CHD3-type chromatin-remodeling factor PICKLE, putative [Entamoeba
invadens IP1]
Length = 1343
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/467 (23%), Positives = 209/467 (44%), Gaps = 63/467 (13%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+Q+EGV + + ++ADEMGLGKT+Q I G LVV P
Sbjct: 383 YQIEGVNWLTYAFSKNVNVILADEMGLGKTIQTITFLRHLYDKCNYVGPHLVVVPLSTIN 442
Query: 257 SWAEELERWLPF--CLPADIHLVFGHRNNPVHLTRF------PR--VVVISYTMLHRLRK 306
+WA+E +W P C+ ++ G + T P+ V++ ++ ++ + +
Sbjct: 443 NWAKEFAKWAPRMNCI---VYTGDGESRAIIRKTEMESTSKKPKFNVLLTTFELVIKDQG 499
Query: 307 SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFH 366
+ W L VDE+H + + +E + +A+L++ + K +L++GTP + +++
Sbjct: 500 LLNLYHWGYLAVDEAHRL----KNAEGQLYEALLNLHTECK--LLITGTPLQNTLKELWS 553
Query: 367 QINMLWPGLLGKAKYDFAKTY--CDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424
++ L P + DF KT+ + +Q + +L + ++R
Sbjct: 554 LLHFLHPEQFPNFE-DFEKTHKVNAAEELQKFHSEL------------------KPYILR 594
Query: 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484
R+K+ + LPPK+ +I+R+ L + + + + K A + + +
Sbjct: 595 RMKKEVEKSLPPKKERILRVGLSGLQKQYYRWIITKNESALKKAVKQQKMSLMNIMIELK 654
Query: 485 ACCRL-----GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539
C ISY E G+ + G L V + DG ++++IF+
Sbjct: 655 KLCNHPLLINQSISYDEQGLIESCGKMVLLDKLLVELKKDG----------HRVLIFSQM 704
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-IIGITAGGVGLDF 598
+++LD + E++ ++G + R+DG+ RQ A+ F + ++ AGG+G++
Sbjct: 705 VRMLDILAEYMKKRGFSYQRLDGSMGKEPRQRAMEQFNAKDSRDFCFLLSTRAGGLGINL 764
Query: 599 SSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+SA V+ + +P LQA+ R HR GQ VNIY + + +E
Sbjct: 765 TSADTVIIYDSDWNPQNDLQAQARCHRIGQEKMVNIYRLVTEGSVEE 811
>gi|359475198|ref|XP_002282100.2| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
vinifera]
Length = 934
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 137/543 (25%), Positives = 234/543 (43%), Gaps = 92/543 (16%)
Query: 173 WNPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLRRGGR---CLIAD 223
W+P E +D ++ ++ L L+ + P Q EGV+F GL C++AD
Sbjct: 157 WHPEESEEQADNLMPIVVDPL---LVRFLRPHQREGVQFMFDCVSGLSSTANISGCILAD 213
Query: 224 EMGLGKTLQAIAIAACFISAG--------SILVVCPAILRLSWAEELERWL-------PF 268
+MGLGKTLQ+I + + G ++V P L +W E+++W+
Sbjct: 214 DMGLGKTLQSITLLYTLLRQGFDGKAMVKKAIIVTPTSLVSNWEAEIKKWVGERVQLVAL 273
Query: 269 CLPADIHLVFG-----HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA--LLIVDES 321
C +VFG ++P+ +V+++SY R+ S + LLI DE+
Sbjct: 274 CESTRDDVVFGIDSFTSPHSPL------QVLIVSYETF-RMHSSKFSHSGSCDLLICDEA 326
Query: 322 HHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY 381
H ++ + + +A+ +A K R VLLSGTP + + F +N PG+LG A Y
Sbjct: 327 HRLKNDQTLTN----RALAALACK--RRVLLSGTPMQNDLEEFFAMVNFTNPGILGDATY 380
Query: 382 DFAKTYCDVKTVQGYQGQLFQDFSK--GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRR 439
+ Y + + G + ++ K R EL+ + Q ++ RR L LPPK
Sbjct: 381 --FRRYYETPIICGREPTAAEEEKKLGAERSAELSSTVNQFIL-RRTNALLSNHLPPKIV 437
Query: 440 QII--RLLLKRSEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKIS 493
+++ RL +SE+ + +K VIN+ K + K C K+
Sbjct: 438 EVVCCRLSPLQSELYNHFIHSKNVKKVINEEMKQS------KILAYITALKKLCNHPKLI 491
Query: 494 YQEL--GIAKLSGFREWLSIHP--VIAESDGA------------ADIDVNPR-------- 529
Y + G SGF + + P + + GA + V R
Sbjct: 492 YDTVKSGNQGTSGFEDCMRFFPPEMFSGRSGAWTGGEGIWVELSGKMHVLARLLAHLRQK 551
Query: 530 -SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ--LSNEVKIAI 586
+++++ +++ + LD + E+ ++R+DG T RQ V+ F L +E + +
Sbjct: 552 TDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFSDPLKDEF-VFL 610
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG GL+ +V + +P+ QA R R GQ V IY F + T +E
Sbjct: 611 LSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEK 670
Query: 647 HWQ 649
+Q
Sbjct: 671 VFQ 673
>gi|326478019|gb|EGE02029.1| chromatin remodeling complex subunit Chd3 [Trichophyton equinum CBS
127.97]
Length = 1412
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 116/479 (24%), Positives = 210/479 (43%), Gaps = 64/479 (13%)
Query: 201 ILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPAIL 254
++ +QLEG+ + + ++ADEMGLGKT+Q I+ A I + LVV P
Sbjct: 674 LMDYQLEGLNWIYSMWYKQQSSVLADEMGLGKTIQVISFFATLIQDHNCWPFLVVVPNST 733
Query: 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--------VVVISYTML--HRL 304
+W +E++RW P + R FPR +VV SY + +
Sbjct: 734 CANWRQEIKRWTPSLRVVTCYGSAAARKIAQEYEMFPRSSKDLRCHIVVTSYESMIEDKT 793
Query: 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDI 364
RK WA L+VDE H ++ K + + +L ++ V +LL+GTP + ++
Sbjct: 794 RKLFSTIPWAGLVVDEGHRLKNDKN----QLYETLLKIS--VPFTLLLTGTPLQNNIREL 847
Query: 365 FHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL--LKQTVM 422
F N+L +CD + + ++ K + E +N L + +
Sbjct: 848 F---NIL--------------QFCD----RSHNAVALEEEYKEMTNENVNKLHDMIRPFF 886
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-------KDATNDKTPK 475
+RR K +L LPP + I+ + + IV K +++ + K+ + T K
Sbjct: 887 LRRTKAQVLSFLPPVAQIILPVSMT---IVQKKLYKSILSKNSQLIKSVFKNTGTNSTVK 943
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS--IHPVIAESDGAADIDVNP----- 528
S+ H+ + +L K +K R S +H + E+ +
Sbjct: 944 QSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKLQ 1003
Query: 529 -RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA-I 586
R ++++IF+ L LD V++F+ G+ +R+DG+ +Q + ++ A +
Sbjct: 1004 ERGHRVLIFSQFLDFLDIVEDFLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFL 1063
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVG++ ++A V+ L+ +P +QA RAHR GQ V ++ + + +E
Sbjct: 1064 LSTRAGGVGINLATADTVIILDPDFNPHQDIQALSRAHRIGQKKKVMVFQLMTRGSAEE 1122
>gi|320538119|ref|ZP_08038015.1| protein, SNF2 family [Treponema phagedenis F0421]
gi|320145032|gb|EFW36752.1| protein, SNF2 family [Treponema phagedenis F0421]
Length = 1211
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 224/508 (44%), Gaps = 74/508 (14%)
Query: 183 DEVVDEMIGKLPKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC 239
+E+ E+ LP+ + + P+QL+G R+ L+ G CL+ D+MGLGKTLQ I + A
Sbjct: 732 NELKKEIDIPLPEGIQATLRPYQLKGYRWLYSNLQNGFGCLLGDDMGLGKTLQVICLCAK 791
Query: 240 FISAG----SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295
IL+V PA L +W E++++ P + ++ G + T + +
Sbjct: 792 LKEESGLPEGILIVAPASLLTNWQHEIKKFAP---QLSVKILHGKDRS---FTAGTDIHI 845
Query: 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355
+Y L R K + ++ + LI+DE+ + + + + KA+ + AK K + L+GT
Sbjct: 846 TTYQTLQRDAKKITDKTFDCLIIDEAQAI----KNANTKNAKALRSLNAKAK--IALTGT 899
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415
P + D+ + L PG LG A+ K + +L D +L+++
Sbjct: 900 PIENSLEDMRSIFDFLLPGYLGSAEAFKKKWRIPI--------ELHNDIDTAEKLKKIT- 950
Query: 416 LLKQTVMIRRLKQ--HLLVQLPPK--RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATND 471
++RRLK ++ LP K Q L ++ I + +I K A N
Sbjct: 951 ---SPFLLRRLKTDPKVISDLPEKIISPQYCTLTPQQVAIYES-----LIRQQLKTALNA 1002
Query: 472 KTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPR-- 529
K D S +L L+ ++ + HP + DI+++ +
Sbjct: 1003 K-----DSIQRSAFIVKL------------LTALKQVCN-HPRTYDKISPPDINLSGKML 1044
Query: 530 ------------SNKMIIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSAVHSF 576
K +IF+ + + L ++E I +E + + G R RQ V +F
Sbjct: 1045 SLIILLKEILTAGEKTLIFSQYTETLFLLKEIIKAELDEDCLLLHGQMPARKRQQNVTAF 1104
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
Q + +I +I + AGG GL+ ++A V+ +L +P++ QA DRA R GQ V ++
Sbjct: 1105 QTEPDKRIFLISLKAGGTGLNLTAASRVIHFDLWYNPAVEDQATDRAFRIGQQKHVFVHR 1164
Query: 637 FCAKDTTDESHWQNLNKSLRCVSSATNG 664
F T +E + + + R VS T G
Sbjct: 1165 FICAGTFEEKIDEMIQRK-RAVSDKTLG 1191
>gi|321261786|ref|XP_003195612.1| chromodomain helicase [Cryptococcus gattii WM276]
gi|317462086|gb|ADV23825.1| Chromodomain helicase, putative [Cryptococcus gattii WM276]
Length = 1502
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 213/472 (45%), Gaps = 60/472 (12%)
Query: 200 VILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPA 252
+ PFQL G+ + +G ++ADEMGLGKT+Q+++ + + G LVV P
Sbjct: 439 ALKPFQLTGLNWLAYVWSKGENGILADEMGLGKTVQSVSFLSYLFHSQHQYGPFLVVVPL 498
Query: 253 ILRLSWAEELERWLP----FCLPADIH---LVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+W + ++W P C ++ P+ +F V++ +Y + + R
Sbjct: 499 STISAWQSQFKKWAPELNVICYMGSARSRDVIRQFEFGPLKNLKF-NVLLTTYEFILKDR 557
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIF 365
+ + + W +L VDE+H ++ E + A+ + K +L++GTP + ++
Sbjct: 558 QDLQQIKWQVLAVDEAHRLK----NHESQLYDALKSFWSASK--LLITGTPLQNNVKELL 611
Query: 366 HQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425
++ L P K+ A + D+ QG +D + T+M+RR
Sbjct: 612 ALMHFLMP-----EKFQLANDF-DLNDASEDQGAKIKDLHDKL----------TTLMLRR 655
Query: 426 LKQHLLVQLPPKRRQIIRLLLKRSE------IVSAKAAV----GVINDSEKDATNDKTPK 475
LK+ ++ +LP K +I+R+ + + I++ AV G S + +
Sbjct: 656 LKKDVVKELPTKSERILRVEMSAMQTHYYKNILTKNFAVLSKGGTQQVSLMNVAMELKKA 715
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMII 535
+ + GA R + G+ SG L + +SDG ++++I
Sbjct: 716 SNHPYLFEGAEDRNKPANEILRGLVMNSGKMVCLDMLLSRLKSDG----------HRVLI 765
Query: 536 FAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIA-IIGITAGG 593
F+ +++LD + ++++ +G R+DG T+P D R+ ++ F A ++ AGG
Sbjct: 766 FSQMVRLLDIISDYMTARGYVHQRLDG-TVPSDVRKKSIEHFNAPGSPDFAFLLSTRAGG 824
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+G++ +A V+ + +P LQA RAHR GQ V+I+ +K T +E
Sbjct: 825 LGINLETADTVIIFDSDYNPQNDLQAMARAHRIGQQRHVSIFRLVSKGTIEE 876
>gi|307204540|gb|EFN83220.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1
[Harpegnathos saltator]
Length = 847
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 127/528 (24%), Positives = 231/528 (43%), Gaps = 81/528 (15%)
Query: 190 IGKLPKSLLD--VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAG 244
I + PK L + P+Q+ G+ + + ++ADEMGLGKT+Q IA AG
Sbjct: 270 ITQQPKDLSSNLTLAPYQMVGLNWLAVMHAQNVNGILADEMGLGKTVQVIAFLTYLKEAG 329
Query: 245 SI-------LVVCPAILRLSWAEELERWLPFCLPADIH--------LVFGHRNNPVHLTR 289
I L+V P+ +W ELERW P + + G RN +
Sbjct: 330 LIDEQDGPHLIVVPSSTIENWWNELERWSPSLKVVQYYGSQDERKEMRMGWRNGDLDDVD 389
Query: 290 FPRVVVISYTML------HRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343
V++ +Y+++ RL + M ++ DE+H ++ V+
Sbjct: 390 ---VLLTTYSLICSTPEERRLFRVM---PINYVVFDEAHMLKNMSSVRYENLVRI----- 438
Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403
K +LL+GTP + ++ + + P L + D + + + Q
Sbjct: 439 -NAKHRILLTGTPLQNNLLELMSLLIFVMPSLFAGKQADLKSLFSKNSKMPSDKKDKDQP 497
Query: 404 FSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR--LLLKRSEI-------VSA 454
+ +++ +++ V+ RRLK +L LP K+ +IIR LL K+ + SA
Sbjct: 498 LFEREQVKNAKEIMRPFVL-RRLKAEVLNDLPYKKDEIIRCELLSKQQSMYDRLIAQFSA 556
Query: 455 KA-------AVGVINDSEKDATNDKTPKDS-DEHDDSGACCRLGK----------ISYQE 496
+A G++ K A + +D DE + RL K ++E
Sbjct: 557 EANEITDVNGTGIMMQLRKLANHPLLVRDYYDEEKLTIIANRLAKEPGYKQKNPKYVFEE 616
Query: 497 LGIAKLSGFREWLSIHPVIA----------ESDGAADID-VNPR----SNKMIIFAHHLK 541
L A + I+ +A ++ +D + PR ++++IF+
Sbjct: 617 LLWASDYQINQMTRIYKSVAGFGLPQELIPQAGKLKHLDELLPRLKKDGHRILIFSQFTM 676
Query: 542 VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601
VLD ++E+++ +G F+R+DG+T +RQS ++ + ++ + I ++ AGG+G++ ++A
Sbjct: 677 VLDILEEYLTIRGQTFIRLDGSTPVTERQSLINEYTQNSSIFIFLLSTRAGGLGINLTAA 736
Query: 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
V+ ++ +P QAEDR HR GQ V I +K T +ES ++
Sbjct: 737 DTVIIHDIDFNPYNDKQAEDRCHRVGQKKPVTIIRLLSKGTIEESMYE 784
>gi|402072696|gb|EJT68413.1| DNA repair and recombination protein RAD26, partial [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 1071
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 124/527 (23%), Positives = 215/527 (40%), Gaps = 79/527 (14%)
Query: 174 NPCRPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLG 228
+P +P+H D + KLP + + +Q GVR F GG ++ DEMGLG
Sbjct: 346 SPDQPDHEFDNGL-----KLPGDIYPALFDYQKTGVRWLSELFEQNVGG--IVGDEMGLG 398
Query: 229 KTLQAIAIAACFISAGS----ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284
KT+Q I+ A + ++VV PA L W E RW P P + ++ +
Sbjct: 399 KTVQLISFVAALHYSQKLTRPVIVVAPATLLRQWVNEFHRWWP---PLRVSILHSSGSGM 455
Query: 285 VHLTRFPR-----------------------------------VVVISYTMLHRLRKSMI 309
+ + R V+V +Y L +I
Sbjct: 456 LDVRSEGRLEDDELSSSDEEAPKKKRGAKAAKKIVDRVVKDGHVLVTTYAGLQAYGGILI 515
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+W ++DE H +R P V + V+LSGTP + +++ +
Sbjct: 516 PVEWDYAVLDEGHKIR------NPNTALTVYCKELRTANRVILSGTPIQNNLVELWSLFD 569
Query: 370 MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
++P LG ++F + GY + E +++R+K
Sbjct: 570 FIYPMRLGTL-HEFRNNIEIPIRLGGYANATNLQIMTAQKCAETLKDAISPYLLQRVKAD 628
Query: 430 LLVQLPPKRRQII--RLL-LKRS---EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDS 483
+ LP K Q++ RL ++RS + +S+K ++N + K + H D
Sbjct: 629 VAADLPKKSEQVLFCRLTQIQRSAYEQFLSSKEMDQILNGTRKSFFGIDQLRKVCNHPDL 688
Query: 484 GACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543
G SY+ G A SG + + + + G +K ++F+ ++L
Sbjct: 689 LDPSVRGDPSYR-WGSASKSGKMQVVKALLHMWKRFG----------HKTLLFSQGTQML 737
Query: 544 DGVQEFIS-EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602
D ++ F+ + GI ++R+DG T +DRQ+ V F + E+ I ++ GG+G++ + A
Sbjct: 738 DILEAFVRRQDGIRYLRMDGRTPIKDRQTLVDQFNNTPELDIFLLTTKVGGLGVNLTGAD 797
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
V+ + +PS +QA +RA R GQ V IY T +E +Q
Sbjct: 798 RVIIFDPDWNPSTDVQARERAWRLGQKKEVTIYRLMTAGTIEEKIYQ 844
>gi|321468122|gb|EFX79109.1| hypothetical protein DAPPUDRAFT_319863 [Daphnia pulex]
Length = 4355
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 123/548 (22%), Positives = 241/548 (43%), Gaps = 80/548 (14%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLS 257
+QLEG+ F G C++ADEMGLGKT+Q++A G LV+ P +
Sbjct: 1704 YQLEGLNWLSFSWFNGRNCILADEMGLGKTIQSLAFVESVHRLGIRGPFLVIAPLSTIPN 1763
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPV--------------------HLTRFPRVVVIS 297
W E E W +++++ H +NP + +F V++ +
Sbjct: 1764 WQREFETW------TNLNIIVYHGSNPSRTMLQEYEFHYKDSKGNQIKEMYKF-NVLITT 1816
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
+ M+ + E W L ++DE+H ++ +K E ++ + +++ VLLSGTP
Sbjct: 1817 FEMIISDCMELREVPWRLCVIDEAHRLK-NKNCKLLEGLRLL-----QMEHRVLLSGTPL 1870
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
+ +++ +N L P ++ DF + + D+K+ ++++L LL
Sbjct: 1871 QNNISELYSLLNFLEPAQFASSE-DFTRDFGDLKSDD--------------QVQKLQALL 1915
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDATNDKT 473
K +M+RRLK+ + L PK I+ + L + K G++ + K TN
Sbjct: 1916 K-PMMLRRLKEDVEKSLAPKEETIVEVELTN---MQKKYYRGILERNFSFLTKGTTNANV 1971
Query: 474 PKDSDEHDDSGACC----RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI----- 524
P + + CC L Q K+S + H + +S G +
Sbjct: 1972 PNLMNTMMELRKCCIHPYLLNGAEEQIQYEMKVSHTSDPDLHHKALIQSSGKLVLVDKLL 2031
Query: 525 -DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-QLSNEV 582
+ ++++IF+ ++ LD +++++ + + R+DG RQ+A+ + + ++
Sbjct: 2032 PKLKADGHRVLIFSQMVRCLDILEDYLIYRKYPYERLDGRIRGNMRQAAIDRYCKPDSDR 2091
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ ++ AGG+G++ ++A V+ + +P LQA+ R HR GQ V IY ++T
Sbjct: 2092 FVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQKKMVKIYRLLTRNT 2151
Query: 643 TDESHWQ------NLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLD 696
+ + L+K++ + T G D + +S E+ D +G+ ++
Sbjct: 2152 YEREMFDKASLKLGLDKAVLQSMNTTQGGKD-YGGSGKQPLSKKEIEDLLKKGAYGALME 2210
Query: 697 QVASSDQF 704
+ D+F
Sbjct: 2211 DDNAGDKF 2218
>gi|417406531|gb|JAA49919.1| Putative snf2 family dna-dependent atpase domain-containing protein
[Desmodus rotundus]
Length = 1486
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 115/504 (22%), Positives = 217/504 (43%), Gaps = 62/504 (12%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD DE K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 483 SDAEFDEGF-KIPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 539
Query: 237 AAC--------------FISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFG--H 280
A F G ++VCP + W +E W P A +H H
Sbjct: 540 LAGLSYSKIRTRGSNYRFQGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAVLHETGSSTH 599
Query: 281 RNNPV--HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338
+ + + +++ SY+ + ++ + DW +I+DE H +R A
Sbjct: 600 KKEKLIQDIVHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR---------NPNA 650
Query: 339 VLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG 395
+ +A K R ++LSG+P + +++ + ++PG LG F + + T+ G
Sbjct: 651 AITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFSVPITMGG 709
Query: 396 YQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII--RLLLKR 448
Y + +L+ T+ ++RR+K + + LP K Q++ RL ++
Sbjct: 710 YSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 766
Query: 449 SEI----VSAKAAVGVINDSEKDATNDKTPKDSDEHDD--SGACCRLGKISYQELGIAKL 502
++ + +K ++N + + + H D SG IS EL +
Sbjct: 767 HKVYQNFIDSKEVYRILNGETQIFSGLTALRKICNHPDLFSGGPKNHKGISDDELEEDRF 826
Query: 503 SGFREWLSIHPVIAESDGAADIDVNPRSN-KMIIFAHHLKVLDGVQEFISEKGIGFVRID 561
++ S ++ ES + + + N ++++F+ ++LD ++ F+ + ++++D
Sbjct: 827 GYWKR--SGKMIVVES----LLKIWHKQNQRVLLFSQSRQMLDLLEVFLRAQKYSYLKMD 880
Query: 562 GNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAED 621
G T RQ + F + + ++ GG+G++ + A V+ + +PS QA +
Sbjct: 881 GTTTIASRQPLIARFNKETSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARE 940
Query: 622 RAHRRGQTSAVNIYIFCAKDTTDE 645
RA R GQ V +Y T +E
Sbjct: 941 RAWRIGQKKQVTVYRLLTAGTIEE 964
>gi|448524405|ref|XP_003868979.1| Rdh54 DNA-dependent ATPase [Candida orthopsilosis Co 90-125]
gi|380353319|emb|CCG26075.1| Rdh54 DNA-dependent ATPase [Candida orthopsilosis]
Length = 825
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 213/490 (43%), Gaps = 72/490 (14%)
Query: 203 PFQLEGVRF------GLR--RGGRCLIADEMGLGKTLQAIAIAACFIS-----------A 243
P QLEGV F G R +G CL+ADEMGLGKTL I +
Sbjct: 217 PHQLEGVSFLYECLMGFRNFKGNGCLLADEMGLGKTLMTITTIWTLLKQNPYPDQKKPVV 276
Query: 244 GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-----VVVISY 298
+LVVCP L +W EE ++WL + L ++ + F + V++I+Y
Sbjct: 277 NKVLVVCPVTLINNWREEFKKWLGLNKVNVLTLNNSMSDDKRDIINFGKLNVYQVLIINY 336
Query: 299 --TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLSGT 355
+ H S I D LL+ DE H ++ S K ++++ + + ++L+GT
Sbjct: 337 EKVLAHYEELSTIPFD--LLVCDEGHRLKNSAN-------KVMINLTKLNISKKIVLTGT 387
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK-GVRLEELN 414
P + + + ++ L P +L AK F K + + T Q+ K G + +
Sbjct: 388 PIQNYLVEFYTLVSFLNPRVLPDAK-TFQKEFINPITRARDVNCFNQEIKKQGEEVSQRL 446
Query: 415 VLLKQTVMIRRL----------KQHLLVQLPPKRRQIIRL-LLKRSE----IVSAKAAVG 459
+ L ++RR K +L+ +PP + Q+ L+K+SE + S ++
Sbjct: 447 ISLTHKFILRRTQAILENYLTNKTDILLFVPPTQLQLDLFDLIKKSEKFQQLDSGTISLS 506
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESD 519
+IN K N + SD+ S I+ L ++ SG + ++ P++ E
Sbjct: 507 LINLFRK-ICNSPSLLASDDFYKS--------ITDGSLKLSTSSG--KLNALIPLVLE-- 553
Query: 520 GAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
+ + K+++ +++ LD +++ I + + ++R+DG T R V+ F
Sbjct: 554 ------ITAQKEKLVLISNYTTTLDLLEKVIKKLNLQYLRLDGTTPNNIRGKLVNRFNRD 607
Query: 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCA 639
+ + ++ +GG G++ A ++ + +PS LQ+ R HR GQ IY
Sbjct: 608 ESISVFLLSSKSGGTGINLVGASRLILYDNDWNPSTDLQSMSRIHRDGQRKPCYIYRIFT 667
Query: 640 KDTTDESHWQ 649
DE +Q
Sbjct: 668 TGCIDEKIFQ 677
>gi|270009357|gb|EFA05805.1| hypothetical protein TcasGA2_TC030720 [Tribolium castaneum]
Length = 729
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 231/512 (45%), Gaps = 84/512 (16%)
Query: 196 SLLDVILPFQLEGVRF--------GLRRGGRCLIADEMGLGKTLQAIAIAACFISAG--- 244
SL +++ P Q EGV+F + C++ADEMGLGKTLQ I + + G
Sbjct: 111 SLSNILRPHQREGVKFMYDCVTGVQIPNSFGCIMADEMGLGKTLQCITLLWTLVRQGPEC 170
Query: 245 -----SILVVCPAILRLSWAEELERWLP---FCLPADIHLVFGHRNNPVHLTRFPR---- 292
++VCP+ L +W+ E+++WL CL D G + LT+F +
Sbjct: 171 KPTIDKGIIVCPSSLVRNWSNEIDKWLKGRLSCLIMD-----GGPDARKKLTQFMQGFGR 225
Query: 293 ----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V++ISY + + + + L++ DE H + + E + KA++ + K +R
Sbjct: 226 TAIPVLIISYETFRMHAEILHKSEIGLVLCDEGHRL----KNCENQTYKALMGL--KARR 279
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-QDFSKG 407
VLLSGTP + + F ++ + GLLG A+ +F K + + ++G + K
Sbjct: 280 RVLLSGTPIQNDLLEYFSLVHFVNEGLLGSAQ-EFKKKF-ENPILRGQDSTATDSERQKA 337
Query: 408 V-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-------IVSAKAAVG 459
V RL+EL+ L+ + +IRR L LP K I+ L + I S G
Sbjct: 338 VERLKELSDLVNR-CLIRRTSNLLTKYLPVKFEMIVICQLTPLQKQIYLNYINSEGLRKG 396
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKI-SYQELGIAKL----SGFREWLSIHP- 513
V+ND E A+ + L K+ ++ +L + K+ GF + + P
Sbjct: 397 VLNDVEVKASLSAL----------ASITTLKKLCNHPDLIMDKILEGGEGFEKSRHLLPP 446
Query: 514 ------VIAESDGA--------ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
V+ + G A++ N ++K+++ +++ + LD ++ ++G +VR
Sbjct: 447 NYNDKDVMPQLSGKLMLLDCFLANLK-NNYNDKVVLVSNYTQTLDLFEKLCRKRGYRYVR 505
Query: 560 IDGNTLPRDRQSAVHSFQ--LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
+DG + R V +F S E I ++ AGG GL+ A ++ + +P+
Sbjct: 506 LDGTMSIKKRAKVVANFNDPESGEF-IFMLSSKAGGCGLNLIGANRLIMFDPDWNPANDD 564
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649
QA R R GQ IY F A T +E +Q
Sbjct: 565 QAMARVWRDGQQKPCYIYRFLAAGTIEEKIFQ 596
>gi|361131939|gb|EHL03554.1| putative DNA repair and recombination protein RAD26 [Glarea
lozoyensis 74030]
Length = 1207
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 127/538 (23%), Positives = 218/538 (40%), Gaps = 82/538 (15%)
Query: 162 EKLSHSIDTGRW-NPC--RPEHLSDEVVDEMIGKLPKSLLDVILPFQLEGVR-----FGL 213
E ++ D W PC P+H D + KLP + + +Q GV+ +
Sbjct: 390 EVVAEQADEEEWFRPCPDAPDHQFDNDI-----KLPGDIYPALFDYQKTGVQWLGELYSQ 444
Query: 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPAILRLSWAEELERWLPFC 269
GG ++ DEMGLGKT+Q I+ A + I+VV PA + W E RW P
Sbjct: 445 SVGG--IVGDEMGLGKTIQIISFLAGLHYSKKLTKPIIVVAPATVLRQWVNEFHRWWPPL 502
Query: 270 LPADIH------LVFGHRNN--------PVHLTRFP------------------RVVVIS 297
+ +H L G H T+ P V+V +
Sbjct: 503 RVSILHSSGSGMLNVGREEKYEEIDEMYTGHTTKKPSKSSRSAQKIVDRVVEHGHVLVTT 562
Query: 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357
Y L +I +W ++DE H +R P + + V+LSGTP
Sbjct: 563 YAGLQTYADVLIPVEWDYAVLDEGHKIR------NPNTGITIHCKELRTPNRVILSGTPM 616
Query: 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417
+ +++ + ++P LG +F + + + GY + E L
Sbjct: 617 QNNLVELWSLFDFVFPMRLGTL-VNFRQAFEVPIRLGGYANATNLQVLTATKCAET---L 672
Query: 418 KQTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSE------IVSAKAAVGVINDSEKDA 468
K T+ +++RLK + LP K Q++ L + + +S+ ++N S K
Sbjct: 673 KATISPYLLQRLKVDVAADLPKKSEQVLFCKLTKPQREAYEMFLSSDEMTSILNHSRKSL 732
Query: 469 TNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNP 528
+ H D GK Y+ G SG + + + ++ G
Sbjct: 733 YGIDILRKICNHPDLLDPRLRGKPGYK-WGNPNKSGKMQVVKALVQMWKNMG-------- 783
Query: 529 RSNKMIIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+K ++F+ +++L+ ++EFI S G ++R+DG T +DRQ+ V F ++ I ++
Sbjct: 784 --HKTLLFSQGVQMLNIIEEFIKSLDGFNYLRMDGGTNVKDRQTLVDRFNNDPDMHIFLL 841
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+G++ + A V+ + +PS +QA +RA R GQ V I+ T +E
Sbjct: 842 TTKVGGLGVNLTGANRVIIFDPDWNPSTDVQARERAWRLGQKKEVTIFRLMTAGTIEE 899
>gi|295671388|ref|XP_002796241.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284374|gb|EEH39940.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 999
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 141/548 (25%), Positives = 231/548 (42%), Gaps = 83/548 (15%)
Query: 177 RPE------HLSDEVVDEMIGKLPKSLLDVILPFQLEGVRF------GLR--RGGRCLIA 222
RPE + D V+D ++GK + Q EGVRF G+R G ++A
Sbjct: 307 RPESVPKGKEIVDVVLDPLLGKH-------LREHQREGVRFLYECVMGMRSFNGEGAILA 359
Query: 223 DEMGLGKTLQAIAIAACFISAGSI----------LVVCPAILRLSWAEELERWLPFCLPA 272
DEMGLGKTLQ IA+ + I L+VCP L +W +E +W L
Sbjct: 360 DEMGLGKTLQTIALIWTLLKQNPIYEAPPVIKKALIVCPVTLIDNWKKEFRKW----LGN 415
Query: 273 DIHLVFGHRNNPVHLTRFP-----RVVVISYTMLHRLRKSMIEQDWA-LLIVDESHHVRC 326
+ VF LT F V++I Y L +++ + + ++I DE H +
Sbjct: 416 ERIGVFVADAKRTRLTDFTMGQSYSVMIIGYERLRTVQEELSKGSGIDIVIADEGHRM-- 473
Query: 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT 386
RT + + +A+ + + V+LSGTP + + F ++ + PG+LG K F K
Sbjct: 474 --RTVQNKSAQAIQPL--NTSKRVILSGTPIQNDLTEFFAMVDFVNPGILGTFKM-FMKQ 528
Query: 387 YCDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKR------- 438
+ G L +D KG R EEL L ++RR L LPPK
Sbjct: 529 FEGPIVKSQQPGALKRDIEKGKARSEEL-ASLTSLFILRRTADLLSKYLPPKTEYVLFCN 587
Query: 439 ---------RQIIRLLLKRSEIVSAKAAVGVINDSEK--DATNDKTPKDSDEHDDSGACC 487
R ++ + + + ++ +A+ +I +K ++ + PK SDE S
Sbjct: 588 PTSSQANIYRHVLSSPVFQCALGNSDSALQLITILKKLCNSPSLLNPKSSDEDSTSTLSS 647
Query: 488 RLGKIS---YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
+ + + L A R + I + S K+++ +++ LD
Sbjct: 648 LVASLPSSITRRLTPASSGKIRVLDQLLHNIRHTT----------SEKVVLISNYTSTLD 697
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI--AIIGITAGGVGLDFSSAQ 602
+ + ++ + F+R+DG+T RQ+ V F S+ + ++ AGG GL+ A
Sbjct: 698 LLGKLLTSLSLSFLRLDGSTPAAKRQALVDDFNRSSSTSVFAFLLSAKAGGTGLNLIGAS 757
Query: 603 NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662
+V ++ +P+ +QA R HR GQ IY F K +E WQ + S
Sbjct: 758 RLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRFLLKGALEEKIWQRQVTKIGLADSVM 817
Query: 663 NGKYDALQ 670
+ K LQ
Sbjct: 818 DQKSGVLQ 825
>gi|189238349|ref|XP_967988.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
protein [Tribolium castaneum]
Length = 713
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 140/555 (25%), Positives = 246/555 (44%), Gaps = 84/555 (15%)
Query: 196 SLLDVILPFQLEGVRF--------GLRRGGRCLIADEMGLGKTLQAIAIAACFISAG--- 244
SL +++ P Q EGV+F + C++ADEMGLGKTLQ I + + G
Sbjct: 95 SLSNILRPHQREGVKFMYDCVTGVQIPNSFGCIMADEMGLGKTLQCITLLWTLVRQGPEC 154
Query: 245 -----SILVVCPAILRLSWAEELERWLP---FCLPADIHLVFGHRNNPVHLTRFPR---- 292
++VCP+ L +W+ E+++WL CL D G + LT+F +
Sbjct: 155 KPTIDKGIIVCPSSLVRNWSNEIDKWLKGRLSCLIMD-----GGPDARKKLTQFMQGFGR 209
Query: 293 ----VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348
V++ISY + + + + L++ DE H + + E + KA++ + K +R
Sbjct: 210 TAIPVLIISYETFRMHAEILHKSEIGLVLCDEGHRL----KNCENQTYKALMGL--KARR 263
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-QDFSKG 407
VLLSGTP + + F ++ + GLLG A+ +F K + + ++G + K
Sbjct: 264 RVLLSGTPIQNDLLEYFSLVHFVNEGLLGSAQ-EFKKKF-ENPILRGQDSTATDSERQKA 321
Query: 408 V-RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSE-------IVSAKAAVG 459
V RL+EL+ L+ + +IRR L LP K I+ L + I S G
Sbjct: 322 VERLKELSDLVNR-CLIRRTSNLLTKYLPVKFEMIVICQLTPLQKQIYLNYINSEGLRKG 380
Query: 460 VINDSEKDATNDKTPKDSDEHDDSGACCRLGKI-SYQELGIAKL----SGFREWLSIHP- 513
V+ND E A+ + L K+ ++ +L + K+ GF + + P
Sbjct: 381 VLNDVEVKASLSAL----------ASITTLKKLCNHPDLIMDKILEGGEGFEKSRHLLPP 430
Query: 514 ------VIAESDGA--------ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVR 559
V+ + G A++ N ++K+++ +++ + LD ++ ++G +VR
Sbjct: 431 NYNDKDVMPQLSGKLMLLDCFLANLK-NNYNDKVVLVSNYTQTLDLFEKLCRKRGYRYVR 489
Query: 560 IDGNTLPRDRQSAVHSFQ--LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLML 617
+DG + R V +F S E I ++ AGG GL+ A ++ + +P+
Sbjct: 490 LDGTMSIKKRAKVVANFNDPESGEF-IFMLSSKAGGCGLNLIGANRLIMFDPDWNPANDD 548
Query: 618 QAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGV 677
QA R R GQ IY F A T +E +Q S+ + + + +V +
Sbjct: 549 QAMARVWRDGQQKPCYIYRFLAAGTIEEKIFQRQAHKKALSSTVVDNNEETARHFSVAEL 608
Query: 678 SYLEMSDKTDRGSED 692
L ++TD + +
Sbjct: 609 RDLFKLEQTDSDTHE 623
>gi|281346214|gb|EFB21798.1| hypothetical protein PANDA_016920 [Ailuropoda melanoleuca]
Length = 1488
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 117/529 (22%), Positives = 210/529 (39%), Gaps = 106/529 (20%)
Query: 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQAIAI 236
SD D+ K+P L + +Q GVR+ + GG ++ DEMGLGKT+Q IA
Sbjct: 481 SDAEFDDF--KMPGFLFKKLFKYQQTGVRWLWELHCQQAGG--ILGDEMGLGKTIQIIAF 536
Query: 237 AA---------------------CFISAGSILVVCPAILRLSWAEELERWLPFCLPADIH 275
A F G ++VCP + W +E W P A +H
Sbjct: 537 LAGLSYSKIRTRGSNYRQVLLCRLFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILH 596
Query: 276 LVFGHRNNPVHLTR----FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTS 331
+ L R +++ SY+ + ++ + DW +I+DE H +R
Sbjct: 597 ETGSYTQKKEKLIRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIR------ 650
Query: 332 EPEEVKAVLDVAAKVKRI---VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC 388
A + +A K R ++LSG+P + +++ + ++PG LG F + +
Sbjct: 651 ---NPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV-FMEQFS 706
Query: 389 DVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQ--HLLVQLPPKRRQII- 442
T+ GY + +L+ T+ ++RR+K + + LP K Q++
Sbjct: 707 VPITMGGYSNASPVQVKTAYKCA---CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLF 763
Query: 443 ---------------------RLLLKRSEIVSAKAAV-GVINDSEKDATNDKTPKD---- 476
R+L +I S A+ + N + + K PKD
Sbjct: 764 CRLTEEQHRVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHPDLFSGGPKNPKDIPDG 823
Query: 477 SDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIF 536
E D G R GK+ I S + W + + ++++F
Sbjct: 824 ELEEDQFGYWKRSGKM------IVVESLLKIW------------------HKQGQRVLLF 859
Query: 537 AHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGL 596
+ ++LD ++ F+ + ++++DG T RQ + + + + ++ GG+G+
Sbjct: 860 SQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTTRVGGIGV 919
Query: 597 DFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + A V+ + +PS QA +RA R GQ V +Y T +E
Sbjct: 920 NLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 968
>gi|449296949|gb|EMC92968.1| hypothetical protein BAUCODRAFT_42604, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1182
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 116/506 (22%), Positives = 205/506 (40%), Gaps = 74/506 (14%)
Query: 192 KLPKSLLDVILPFQLEGVR-----FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS- 245
++P + + +Q GV+ + + GG +I DEMGLGKT+Q I+ A +
Sbjct: 365 RVPGDIYPSLFDYQKTGVQWLWELYSQQVGG--IIGDEMGLGKTIQIISFLASLHYSDKL 422
Query: 246 ---ILVVCPAILRLSWAEELERWLPFCLPADIHL---------------------VFGHR 281
I+VVCPA + W E RW P + +H ++G +
Sbjct: 423 TKPIIVVCPATVMKQWVNEFHRWWPPLRVSILHTSGSGMLDIKREARIEDDLEVDMYGRK 482
Query: 282 N---NPVH---------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329
N H + R V+V +Y+ L + +I DW ++DE H +R
Sbjct: 483 KATMNKGHKAAKRIVDRVVRDGHVLVTTYSGLQTYAELLIPTDWEYAVLDEGHKIR---- 538
Query: 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD 389
P + + V+LSGTP + +++ + ++P LG +F +
Sbjct: 539 --NPNTAITIYCKELRTHNRVILSGTPMQNNLTELWSLFDFVFPMRLGTL-VNFRSQFEI 595
Query: 390 VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV---MIRRLKQHLLVQLPPKRRQIIRLLL 446
GY ++ E LK T+ +++R K + LP K +++ L
Sbjct: 596 PIKQGGYANASNLQVETAMKCAET---LKDTISPYLLQRFKVDVAADLPKKSERVLFCKL 652
Query: 447 KRSE------IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500
+ + ++++ +++ + + H D L K + G
Sbjct: 653 TKLQREAYEWFLASEEMKSILSGKRQALYGVDILRKICNHPDLVEHKTLSKKAGYNYGSG 712
Query: 501 KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI-SEKGIGFVR 559
SG + + I + DG +K ++FA H +LD ++ FI G + R
Sbjct: 713 HKSGKMQVVKALLEIWKRDG----------HKTLLFAQHRIMLDILETFIQGMDGFNYRR 762
Query: 560 IDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619
+DGNT +DRQ V F ++ + ++ GG+G++ + A V+ + +PS +QA
Sbjct: 763 MDGNTSIKDRQDLVDEFNKDQDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQA 822
Query: 620 EDRAHRRGQTSAVNIYIFCAKDTTDE 645
+RA R GQ V IY T +E
Sbjct: 823 RERAWRLGQKREVEIYRLMTAGTIEE 848
>gi|148266412|ref|YP_001233118.1| non-specific serine/threonine protein kinase [Geobacter
uraniireducens Rf4]
gi|146399912|gb|ABQ28545.1| Non-specific serine/threonine protein kinase [Geobacter
uraniireducens Rf4]
Length = 1164
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 123/475 (25%), Positives = 213/475 (44%), Gaps = 65/475 (13%)
Query: 192 KLPKSLLDVILPFQLEGVRF----GLRRGGRCLIADEMGLGKTLQAIA----IAACFISA 243
+LP L ++ P+Q EG + R G CL AD+MGLGKT+Q IA IA I +
Sbjct: 695 RLPAGLKTMLRPYQHEGYEWLSFLYEHRFGACL-ADDMGLGKTVQTIAFLGGIAEGQIDS 753
Query: 244 GSI-----LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVI 296
++ L+V P L +W EL R+ P L P F +V+
Sbjct: 754 AAVAGTPHLIVVPPSLLFNWESELARFYP-------ALRIVSYTGPRRTLDFSAADIVLT 806
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
SY +L R +++ + ++I DE+ V+ + + A + + K + L+GTP
Sbjct: 807 SYGILQRDIETLETLPFNVVIFDEAQQVKNIQTAT----TGAARRINGRFK--LALTGTP 860
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ + F +++ PGLLG Y + D++ G ++ L
Sbjct: 861 MENHLGEYFAIMDLCVPGLLGP--YQEFRRRIDIRGTGG-----------------IDTL 901
Query: 417 LKQT--VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
+++T ++RR KQ + +LPP+ + L L + + V + + +A K
Sbjct: 902 IRRTRPFVLRRSKQMIADELPPRIEMDLYLELTPKQRALYQRTVEEVRGAVDEAFRAKAA 961
Query: 475 KDSDEHDDSGACCRLGKI----SYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRS 530
+ + A RL +I + G+ S +E L+ + + +G
Sbjct: 962 GQARMIALT-AILRLRQICLSAALVTAGVKGESPKQECLADNLLELRDEG---------- 1010
Query: 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590
+ ++F+ LD V+E + ++G+ +R+DG+T R+ V FQ S E + +I +
Sbjct: 1011 HSALVFSQFTSYLDLVEEGLKQRGLATLRLDGSTPVPRRKELVRQFQQSEEPLVFLISLK 1070
Query: 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
AGG GL+ + A V L+ +P++ QA DRAHR GQT+ V + + T +E
Sbjct: 1071 AGGKGLNLTRATYVYHLDPWWNPAVENQASDRAHRIGQTAQVTVNRLLMRHTVEE 1125
>gi|171687883|ref|XP_001908882.1| hypothetical protein [Podospora anserina S mat+]
gi|170943903|emb|CAP69555.1| unnamed protein product [Podospora anserina S mat+]
Length = 1700
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/480 (26%), Positives = 212/480 (44%), Gaps = 60/480 (12%)
Query: 204 FQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRL 256
FQL+G+ F RG ++ADEMGLGKT+Q ++ + + G LVV P +
Sbjct: 463 FQLKGLNFLALNWTRGNNVILADEMGLGKTVQTVSFLSWLRNERGQEGPFLVVAPLSVIP 522
Query: 257 SWAEELERWLPFCLPADIHLVF-----GHRNNPVHLTRF-------PR--VVVISYTMLH 302
+W + W P DI+ V R+N F P+ V+V SY +
Sbjct: 523 AWCDTFNHWSP-----DINYVVYLGPEAARSNIREYELFVDGNPKKPKFNVLVTSYDYIL 577
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ W +L VDE+H R R S+ + +KV L++GTP +
Sbjct: 578 ADADHLKGIKWQVLAVDEAH--RLKNRESQLYVKLNGFGIPSKV----LITGTPIQNNLA 631
Query: 363 DIFHQINMLWPG-LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
++ ++ L PG +L + + T D K Q + +L++L+ +
Sbjct: 632 ELAALLDFLNPGKVLIDEELELLST-ADSKEPVDEQLDEAKRLKTQAKLQDLHKSIA-PF 689
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR K+ + LPPK +IIR+ L ++ K + + DA+N H
Sbjct: 690 ILRRTKETVESDLPPKTEKIIRVELSDLQLEYYKNILTRNYAALSDASNG--------HK 741
Query: 482 DS--GACCRLGKIS--------YQELGIAKLSGFREWLSIHPVIAESDGAADID-----V 526
S L K+S +E +A SG RE ++ +I S +D +
Sbjct: 742 QSLLNIMMELKKVSNHPYMFQGAEERVLANGSGRRE-DAVKGLITSSGKMMLLDQLLAKL 800
Query: 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA- 585
++++IF+ +K+LD + +++ +G F R+DG R+ A++ F +
Sbjct: 801 KKDGHRVLIFSQMVKMLDILADYLRIRGYQFQRLDGTIPAGPRRLAINHFNAEDSDDFCF 860
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
++ AGG+G++ +A V+ + +P LQA RAHR GQ VN+Y AK T +E
Sbjct: 861 LLSTRAGGLGINLMTADTVIIYDSDWNPQADLQAMARAHRIGQKRPVNVYRLVAKQTIEE 920
>gi|241952408|ref|XP_002418926.1| dna repair and recombination protein rdh54, putative [Candida
dubliniensis CD36]
gi|223642265|emb|CAX44234.1| dna repair and recombination protein rdh54, putative [Candida
dubliniensis CD36]
Length = 882
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 122/499 (24%), Positives = 211/499 (42%), Gaps = 78/499 (15%)
Query: 197 LLDVILPFQLEGVRF------GLRR--GGRCLIADEMGLGKTLQAIAIAACFIS------ 242
L V+ P Q+EGVRF G R G CL+ADEMGLGKTL I +
Sbjct: 262 LSKVLRPHQVEGVRFMYECLMGYRDFDGNGCLLADEMGLGKTLMTITTIWTLLKQNPFLD 321
Query: 243 -----AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR----- 292
+LVVCP L +W +E ++WL + L N + F +
Sbjct: 322 QKNAVVNKVLVVCPVTLISNWRQEFKKWLGANKLNVLTLNNAMTNEKRDILNFGKLNVYQ 381
Query: 293 VVVISY--TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD--VAAKVKR 348
V+V++Y M H S + D LL+ DE H ++ S VL+ + + +
Sbjct: 382 VLVVNYEKIMAHFDELSTVSFD--LLVCDEGHRLKNS--------ANKVLNNLIKLNIPK 431
Query: 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY---DFAKTYCDVKTVQGYQGQLFQDFS 405
V+L+GTP + + I+ L P +L + K +F + V + ++ +
Sbjct: 432 KVVLTGTPIQNELVEFHTLISFLNPKVLPELKLFQRNFITPISRARDVNCFDPEVKK--- 488
Query: 406 KGVRLEELNVLLKQTVMIRRL----------KQHLLVQLPPKRRQI-----IRLLLKRSE 450
+G + + + L Q+ ++RR K +L+ +PP Q+ I L K ++
Sbjct: 489 RGEEISQQLIKLTQSFILRRTQSILANYLTQKTDILLFVPPTSSQLELFNYITNLKKFNQ 548
Query: 451 IVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510
S + +IN +K + D DE KI Q+ + SG L
Sbjct: 549 FNSGSDSFTMINLFKKICNSPSLLAD-DEF--------FKKIVEQKFNLGMSSGKLNILV 599
Query: 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
P++ E + K+++ +++ K LD ++ + + + F R+DG+T R
Sbjct: 600 --PLLLEIVSLKE--------KIVLISNYTKTLDLLETVLRKINLTFSRLDGSTPNNVRS 649
Query: 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630
V+ F + ++ + ++ +GG+G++ A ++ + +P+ LQ+ R HR GQ
Sbjct: 650 KLVNQFNTNPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQVK 709
Query: 631 AVNIYIFCAKDTTDESHWQ 649
IY DE +Q
Sbjct: 710 PCFIYRLFTTGCIDEKIFQ 728
>gi|257069450|ref|YP_003155705.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
faecium DSM 4810]
gi|256560268|gb|ACU86115.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
faecium DSM 4810]
Length = 1110
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 212/483 (43%), Gaps = 67/483 (13%)
Query: 187 DEMIGKLPKSLLDVILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACF--- 240
D + LP++L + P+Q EG + F G ++AD+MGLGKTLQ +A+ A
Sbjct: 634 DAPVPPLPEALQAELRPYQREGYAWLTFLFSHGLGGVLADDMGLGKTLQTLALVAHARER 693
Query: 241 -ISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF-PRVVVISY 298
S LVV PA + W E ER+ P + R + +VV SY
Sbjct: 694 SASEPPFLVVAPASVLPVWRREAERFAPGLEVRVLDRTVAARGTDLPTAMLGADLVVTSY 753
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSL 358
++L + + ++DE+ V+ + + +A V A + + ++GTP
Sbjct: 754 SVLRIDEEEFASTRFQGFVLDEAQFVKNRRSRTH----RAAKGVRAGFR--LAITGTPME 807
Query: 359 SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418
+ D++ ++++ PGLLG A F K Y + G R+E LL+
Sbjct: 808 NSLDDLWAILDLVAPGLLGTA-IGFRKRYTLPIETGDHPG----------RME----LLR 852
Query: 419 QTV---MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPK 475
+ V ++RR K+ + +LP K +++ + L +A + E+
Sbjct: 853 RRVRPFLLRRTKELVAAELPEKHEEVLTVTLG----AEHRAVYDSVLQRERKKVLGLIDT 908
Query: 476 DSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI----------- 524
D D R I ++ L + ++ +++ P + + + AD+
Sbjct: 909 DLD---------RSRFIVFRSLTLLRM------MALDPSLVDPEAYADVPSSKLEALFDR 953
Query: 525 --DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582
+V +++++F+ LD V + + + + +DG+T RDR +AV F+ +
Sbjct: 954 LEEVIGDGHRVLLFSQFTSYLDQVASELERREVRYAHLDGST--RDRDAAVAGFR-EGDA 1010
Query: 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642
+ +I + AGG GL + A V L+ +P+ QA DRAHR GQ V +Y A+DT
Sbjct: 1011 PVFLISLKAGGFGLTLTEADYVFLLDPWWNPAAENQAVDRAHRIGQDRTVMVYRMIAEDT 1070
Query: 643 TDE 645
+E
Sbjct: 1071 IEE 1073
>gi|156403967|ref|XP_001640179.1| predicted protein [Nematostella vectensis]
gi|156227312|gb|EDO48116.1| predicted protein [Nematostella vectensis]
Length = 1552
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 106/452 (23%), Positives = 205/452 (45%), Gaps = 41/452 (9%)
Query: 220 LIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIH 275
++ADEMGLGKT+Q IA+ + I G LV+ P +W E E+W P +
Sbjct: 668 ILADEMGLGKTIQTIALFSYLIEKKRLNGPFLVIVPLSTLSNWQLEFEKWAPSAIVVSYK 727
Query: 276 LVFGHRNNPVHLTRFPR--VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR---CSKRT 330
R + + R + VV+ +Y + R + + + W ++VDE H ++ C
Sbjct: 728 GSPNMRRSAGAVLRTGKFNVVLTTYEYVMRDKAILAKVRWKYMVVDEGHRMKNHHC---- 783
Query: 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390
++ VL+ + +LL+GTP +R +++ +N L P + K+ F + +
Sbjct: 784 ----KLTQVLNTHYAAQHRILLTGTPLQNRLPELWALLNFLLPTIF-KSVSTFEQWFNAP 838
Query: 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRL---LLK 447
+ G + +L ++ + + + L+ +L+ ++RRLK+ + QLP K +++ +L+
Sbjct: 839 FAMTGEKVELNEEETILI-IRRLHKVLR-PFLLRRLKKEVESQLPDKVEYVVKCDMSILQ 896
Query: 448 RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKI-------SYQELGIA 500
R + + GV+ D + +L KI + E IA
Sbjct: 897 RI-LYNHMYKKGVL---LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPFMFQHIEESIA 952
Query: 501 KLSGFREWLSIHPVIAESDGAADI------DVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
+ GF + P I + G ++ + +++++F ++ ++++ + KG
Sbjct: 953 EHLGFHGGIVTGPDIYRASGKFELLDRILPKLKRNKHRVLMFCQMTSLMTILEDYFNWKG 1012
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
++R+DG T DR + F + + ++ AGG+GL+ +A VV + +P
Sbjct: 1013 FPYLRLDGTTKSEDRGQLLSLFNAKDSPYFVFLLSTRAGGLGLNLQAADTVVIFDSDWNP 1072
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
LQA+DRAHR GQ V + ++ +E
Sbjct: 1073 HQDLQAQDRAHRIGQEKEVRVLRLMTVNSVEE 1104
>gi|440749899|ref|ZP_20929144.1| superfamily II DNA/RNA helicase, SNF2 family [Mariniradius
saccharolyticus AK6]
gi|436481619|gb|ELP37781.1| superfamily II DNA/RNA helicase, SNF2 family [Mariniradius
saccharolyticus AK6]
Length = 975
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 123/477 (25%), Positives = 219/477 (45%), Gaps = 71/477 (14%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAA----CFISAG 244
+P S + P+Q G +RF + G CL AD+MGLGKT+Q +A+ A F +
Sbjct: 509 MPVSFHGTLRPYQKAGYNWLRFLAEYKFGGCL-ADDMGLGKTVQTLALLAHEKEQFPEST 567
Query: 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLH 302
S+LV+ P L +W E ++ P LV+ +F +V+ SY +
Sbjct: 568 SLLVM-PTSLIYNWELEARKFTPNLRI----LVYTGGQRIKESAQFANYDLVLTSYGITR 622
Query: 303 RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
+ + + +I+DES ++ P + A ++ ++L+GTP +
Sbjct: 623 LDLDVLKDFRFNYVILDESQAIK------NPGSIIAKAVNELNCRQRLILTGTPVENGTM 676
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
D++ Q+N + GLLG F + + + D K +L + + +
Sbjct: 677 DLWSQMNFINRGLLGNQN-TFKRQFL-------LPIEKMNDKDKAAKLHAM----IKPFI 724
Query: 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482
+RRLK + +LP K + K S + A+ +K + +
Sbjct: 725 LRRLKSQVATELPEKVINV-----KYSTMTEAQ---------------EKAYEQVKGYYR 764
Query: 483 SGACCRLG--KISYQELGIAK-LSGFREWLSIHPVIAESDGAADI----DVN-------P 528
LG I Q+ + + L+ R+ ++ HP + + D +D D+
Sbjct: 765 EKIVSELGVPGIKNQQFTLLRGLTQLRQ-MANHPKLTDKDYTSDSGKLEDITHMIKATVS 823
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+K+++F+ ++ L V+EF+ E+ I + +DG T +DRQ V +FQ + ++K+ +I
Sbjct: 824 EGHKVLVFSQFVRHLAIVKEFLQEEKIQYAYLDGAT--KDRQGQVKAFQENPDIKLFLIS 881
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ AGGVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F ++T +E
Sbjct: 882 LKAGGVGLNLTRAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVIIYKFITRNTVEE 938
>gi|291298955|ref|YP_003510233.1| SNF2-like protein [Stackebrandtia nassauensis DSM 44728]
gi|290568175|gb|ADD41140.1| SNF2-related protein [Stackebrandtia nassauensis DSM 44728]
Length = 621
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 205/466 (43%), Gaps = 70/466 (15%)
Query: 203 PFQLEGVRFGLR------RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256
P+Q G+ + LR RG L+AD+MGLGKTLQ IA+ A S LVVCP +
Sbjct: 158 PYQRRGLAW-LRAVAAHHRG--ALLADDMGLGKTLQTIALLAERTSNRPHLVVCPTSVVG 214
Query: 257 SWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP--RVVVISYTMLHRLRKSMIEQDWA 314
+W E+ R+ P D+ +V H + + RFP VVV SY +L R + DW
Sbjct: 215 NWTREIARFAP-----DLPVVLHHGPSRREVARFPDGAVVVTSYNLLLRDIDLLSILDWD 269
Query: 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPG 374
++++DE+ ++ + S+ + +L A+V L+GTP +R +++ ++ + PG
Sbjct: 270 VVVLDEAQQIK--NQASQTAKAARILPAQARVA----LTGTPVENRLGELWSIMDFVNPG 323
Query: 375 LLG---KAKYDFA---KTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
+LG + + FA ++ D + + +G + Q ++RRLK
Sbjct: 324 ILGSYSRFQKRFASPIESRADARVTERLRG------------------IVQPFLLRRLKS 365
Query: 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH-------- 480
+ LP K+ + L + AAV + A ND + H
Sbjct: 366 EVAADLPAKQESTVACTLTSEQAKLYSAAV-------ERAMNDGLGSGFERHGRVLKLLT 418
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540
+ C + QE + SG + A ++GA + + A HL
Sbjct: 419 ELKQICNHPAQFLRQEHPLTGRSGKLARATEMLAEAVAEGAQSLVFTQYRVMGELLATHL 478
Query: 541 KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFS 599
G+++ + F + G R + V FQ ++ I I+ + AGG GL+ +
Sbjct: 479 AAELGLEK------VPF--LHGGVSQPGRDAMVAEFQSGDDPPPILIVSLKAGGTGLNLT 530
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+A +V+ + +P++ QA DRAHR GQT V +Y T +E
Sbjct: 531 AATHVLHYDRWWNPAVEDQATDRAHRIGQTKPVTVYKLVTGGTLEE 576
>gi|94268376|ref|ZP_01291158.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
helicase-like [delta proteobacterium MLMS-1]
gi|93451632|gb|EAT02425.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
helicase-like [delta proteobacterium MLMS-1]
Length = 1022
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 121/457 (26%), Positives = 213/457 (46%), Gaps = 48/457 (10%)
Query: 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPAILRLS 257
+ P+Q++G F L GR L+AD+MGLGKTLQAI+ A +IL++CPA L+
Sbjct: 317 LYPYQIDGAAF-LAGTGRALLADDMGLGKTLQAISAAVWLREHEGVRTILIICPASLKQQ 375
Query: 258 WAEELERWLPFCLPADIHLVFGHR-NNPVHLTRFPRVVVISYTMLHR---LRKSMIEQDW 313
WA E+ ++ D +V G V R +I+Y ++ R L + D
Sbjct: 376 WAREIGKFTEL----DCRVVQGPPPERGVQYRRESDFFIINYELVLRDLSLLNETLRPD- 430
Query: 314 ALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWP 373
L+I+DE+ ++ + RT VK + + +L+GTP +R +++ + ++ P
Sbjct: 431 -LIILDEAQRIK-NWRTKIASAVKLI-----PSRYAFVLTGTPLENRLEELYSLMQVVNP 483
Query: 374 GLLG---KAKYDFAKTYCDVKTVQGYQG-QLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429
+LG + DF T K V GY+ L + V L L+K + R++Q
Sbjct: 484 AILGPLWRYMIDFHVTDEKGK-VLGYRNLSLLRQRLAPVMLRRDRRLVKDQ-LPDRVEQR 541
Query: 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489
L V+L P++R++ + L + ++ A + SE++ + AC
Sbjct: 542 LDVELTPQQRELHDVGLSTAGSLARIAKRRPLTPSEQNRLI------AGLQQARMACDAA 595
Query: 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN-KMIIFAHHLKVLDGVQE 548
G + + +G K+ + L +V +S K ++F+ + V++
Sbjct: 596 GLVDKESVGSPKIDELAQILD--------------EVCLQSGLKAVVFSQWELMTRMVEQ 641
Query: 549 FISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608
+ GIG+VR+ G R + F+ S++ + + AGGVGL+ SA +V L+
Sbjct: 642 RLRRLGIGYVRLHGGVPTAKRGELLERFR-SDDSVLVFLSTDAGGVGLNLQSASVLVNLD 700
Query: 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+P +P+++ Q R HR GQ + V I A ++ +E
Sbjct: 701 VPWNPAVLEQRNGRIHRLGQPNKVQIITMVAANSYEE 737
>gi|197246330|gb|AAI68549.1| Unknown (protein for MGC:184754) [Xenopus (Silurana) tropicalis]
Length = 2179
Score = 113 bits (282), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 131/551 (23%), Positives = 238/551 (43%), Gaps = 84/551 (15%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLS 257
+QLEGV F C++ADEMGLGKT+Q+I + G LV+ P +
Sbjct: 753 YQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITN 812
Query: 258 WAEELERWLP---------------------FCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
W E W +C + L+ G +T F V+
Sbjct: 813 WEREFGSWTQMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVL-- 870
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
+ LR E +W +I+DE+H R R + + +D+ KV LL+GTP
Sbjct: 871 --SDCPELR----EIEWRCVIIDEAH--RLKNRNCKLLDSLKHMDLEHKV----LLTGTP 918
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++F ++ L P ++ +F K + D+KT + ++++L +
Sbjct: 919 LQNTVEELFSLLHFLEPTQFS-SEAEFLKDFGDLKTEE--------------QVQKLQAI 963
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDATNDK 472
LK +M+RRLK+ + L PK+ II + L + K ++ + K A+
Sbjct: 964 LK-PMMLRRLKEDVEKNLAPKQETIIEVELTN---IQKKYYRAILEKNFSFLTKGASQSN 1019
Query: 473 TPKDSDEHDDSGACCRLGK-ISYQELGIAKLSGFREWLSIHP-------VIAESDGAADI 524
TP + + CC I+ E I +S FRE + P ++ S I
Sbjct: 1020 TPNLLNTMMELRKCCNHPYLITGAEEKI--ISEFREATPVVPPDFHVQAMVRSSGKLVLI 1077
Query: 525 D-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
D + +K++IF+ ++ LD +++++ ++ + RIDG RQ+A+ F
Sbjct: 1078 DKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRP 1137
Query: 580 NEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ + + T AGG+G++ ++A + + +P LQA+ R HR GQ+ AV IY
Sbjct: 1138 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLI 1197
Query: 639 AKDTTDESHWQNLNKSL---RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTL 695
+++ + + + L + V + +G+ + L ++ + E+ D +G+ +
Sbjct: 1198 TRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSG-PIQQFTKKEIEDLLRKGAYAAIM 1256
Query: 696 DQVASSDQFQE 706
D+ +F E
Sbjct: 1257 DEDDEGSKFCE 1267
>gi|332029993|gb|EGI69818.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
[Acromyrmex echinatior]
Length = 1852
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 124/492 (25%), Positives = 213/492 (43%), Gaps = 108/492 (21%)
Query: 204 FQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRL 256
+QLEG+ R+ +G ++ADEMGLGKT+Q I G LV P +
Sbjct: 624 YQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTII 683
Query: 257 SWAEELERWLP--FCLP----ADIHLVFGHRNNPVHL----TRFPR------------VV 294
+W E E W P +C+ D +V R N + R R V+
Sbjct: 684 NWEREFETWAPDFYCVTYVGDKDSRIVI--RENELSFEEGAVRSGRASKIRSSSIKFNVL 741
Query: 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354
+ SY ++ + DWA+L+VDE+H ++ ++ S+ + A ++A K+ LL+G
Sbjct: 742 LTSYELISIDSACLGSIDWAVLVVDEAHRLKSNQ--SKFFRLLASYNIAYKL----LLTG 795
Query: 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414
TP + ++FH +N L + K++ + +Q + F D SK ++++L+
Sbjct: 796 TPLQNNLEELFHLLN-----FLCRDKFN---------DLAAFQNE-FADISKEEQVKKLH 840
Query: 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP 474
+L M+RRLK +L +P K I+R+ L + K I +A N P
Sbjct: 841 EMLGPH-MLRRLKADVLKNMPSKSEFIVRVELSPMQ----KKYYKYILTRNFEALN---P 892
Query: 475 KDSDEH-------DDSGACCRLGKI--------------SYQELGIAKLSGFREWLSIHP 513
K + D CC + SY+ + K +G LS
Sbjct: 893 KGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETSALIKAAGKLVLLSKML 952
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
DG ++++IF+ K+LD +++++ +G + RIDG
Sbjct: 953 KKLRDDG----------HRVLIFSQMTKMLDILEDYLEGEGYKYERIDG----------A 992
Query: 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633
F + ++ AGG+G++ ++A V+ + +P +QA RAHR GQ + V
Sbjct: 993 QQF-------VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1045
Query: 634 IYIFCAKDTTDE 645
IY F +++ +E
Sbjct: 1046 IYRFVTRNSVEE 1057
>gi|300718555|ref|YP_003743358.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
gi|299064391|emb|CAX61511.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
Length = 877
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 132/521 (25%), Positives = 221/521 (42%), Gaps = 90/521 (17%)
Query: 163 KLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL-----------PKSLLDVILPFQLEG--- 208
+L+ DTGRW + D V ++ +L PK L + +Q +G
Sbjct: 370 RLTALNDTGRW-----QFHGDSGVCQLAERLRSSEGILPVEPPKGLHAQLRDYQQQGLNW 424
Query: 209 VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSI----LVVCPAILRLSWAEELER 264
++F ++AD+MGLGKT+Q +A AG + L+V P L +W +E R
Sbjct: 425 MQFLRAHDLSGVLADDMGLGKTVQTLAHLQLEKEAGRLDRPALIVVPTTLVYNWTQEASR 484
Query: 265 WLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV 324
+ P + L R VV+ +Y++L R + +I + LLI+DE+ +V
Sbjct: 485 FTPEL--KVLALTGPDRKAFYDDIEKYDVVLTTYSLLWRDQPQLIGHSYHLLILDEAQYV 542
Query: 325 RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFA 384
+ S + A + + K + + L+GTP + +++ Q + L PG LG K
Sbjct: 543 KNSASRA------ASVIRSLKSRHRLCLTGTPLENHLGELWSQFDFLLPGFLGSEK---- 592
Query: 385 KTYCDVKTVQGYQGQLFQDFS-----KGVRLE-ELNVLLKQTVMIRRLKQHLLVQLPPKR 438
Q QD+ G R+ EL + M+RR KQ + +LPPK
Sbjct: 593 --------------QFTQDWRVPIERNGDRVRRELLARRVRPFMLRRRKQEVAKELPPKN 638
Query: 439 RQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA------CC----- 487
+ + ++ S+ ++ + D + A + S CC
Sbjct: 639 TIVRSVEMEGSQRELYESVRSAMQDRVRLAVEQQGAGRSHLLVLDALLKLRQICCDPRLV 698
Query: 488 ---RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544
+ K+ + AKL+ RE L D+ +++IF+ +L
Sbjct: 699 KTDKAAKVKHS----AKLALLREMLD--------------DLLAEDRRILIFSQFTTMLS 740
Query: 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604
+ E + + I FV + G+T RDR V FQ EV + +I + AGGVGL+ ++A V
Sbjct: 741 LIAEELQKARIPFVTLTGST--RDRIEPVRRFQ-EGEVPVFLISLKAGGVGLNLTAADTV 797
Query: 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ + +P+ QA DRA+R GQ V +Y A + +E
Sbjct: 798 IHYDPWWNPAAENQATDRAYRLGQDKPVFVYKLIAAGSIEE 838
>gi|350529335|ref|NP_001131089.2| chromodomain-helicase-DNA-binding protein 8 [Xenopus (Silurana)
tropicalis]
gi|226706291|sp|B5DE69.2|CHD8_XENTR RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8
Length = 2184
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 131/551 (23%), Positives = 238/551 (43%), Gaps = 84/551 (15%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLS 257
+QLEGV F C++ADEMGLGKT+Q+I + G LV+ P +
Sbjct: 758 YQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITN 817
Query: 258 WAEELERWLP---------------------FCLPADIHLVFGHRNNPVHLTRFPRVVVI 296
W E W +C + L+ G +T F V+
Sbjct: 818 WEREFGSWTQMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVL-- 875
Query: 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356
+ LR E +W +I+DE+H R R + + +D+ KV LL+GTP
Sbjct: 876 --SDCPELR----EIEWRCVIIDEAH--RLKNRNCKLLDSLKHMDLEHKV----LLTGTP 923
Query: 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416
+ ++F ++ L P ++ +F K + D+KT + ++++L +
Sbjct: 924 LQNTVEELFSLLHFLEPTQFS-SEAEFLKDFGDLKTEE--------------QVQKLQAI 968
Query: 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDS----EKDATNDK 472
LK +M+RRLK+ + L PK+ II + L + K ++ + K A+
Sbjct: 969 LK-PMMLRRLKEDVEKNLAPKQETIIEVELTN---IQKKYYRAILEKNFSFLTKGASQSN 1024
Query: 473 TPKDSDEHDDSGACCRLGK-ISYQELGIAKLSGFREWLSIHP-------VIAESDGAADI 524
TP + + CC I+ E I +S FRE + P ++ S I
Sbjct: 1025 TPNLLNTMMELRKCCNHPYLITGAEEKI--ISEFREATPVVPPDFHVQAMVRSSGKLVLI 1082
Query: 525 D-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579
D + +K++IF+ ++ LD +++++ ++ + RIDG RQ+A+ F
Sbjct: 1083 DKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRP 1142
Query: 580 NEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
+ + + T AGG+G++ ++A + + +P LQA+ R HR GQ+ AV IY
Sbjct: 1143 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLI 1202
Query: 639 AKDTTDESHWQNLNKSL---RCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTL 695
+++ + + + L + V + +G+ + L ++ + E+ D +G+ +
Sbjct: 1203 TRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSG-PIQQFTKKEIEDLLRKGAYAAIM 1261
Query: 696 DQVASSDQFQE 706
D+ +F E
Sbjct: 1262 DEDDEGSKFCE 1272
>gi|71008587|ref|XP_758230.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
gi|46097848|gb|EAK83081.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
Length = 870
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 133/550 (24%), Positives = 231/550 (42%), Gaps = 84/550 (15%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAI 236
V+D ++ K V+ P Q+EGV+F R + C++ADEMGLGKTLQ IA+
Sbjct: 277 VIDPVLSK-------VLRPHQVEGVKFLYRCTTGLVVEKAYGCIMADEMGLGKTLQCIAL 329
Query: 237 AACFISAGSI---------LVVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPVH 286
+ I ++VCP+ L +WA EL +WL P ++ L ++ +
Sbjct: 330 MWTLLKQSPIAHKSTIEKCIIVCPSSLVRNWANELIKWLGPAAPGNLALDGKLSKDEMIE 389
Query: 287 LTR----------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
TR V+++SY L L++ + + LL+ DE H + + ++
Sbjct: 390 ATRRWCSASGRAISQPVMIVSYETLRNLQEELGNTEVGLLLCDEGHRL----KNADSLTF 445
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
+A+ + KV+R V+LSGTP + + F +N P LLG ++ +F K + ++ ++G
Sbjct: 446 QALTQI--KVRRRVILSGTPIQNDLSEYFALLNFANPELLG-SRTEFRKNF-EIAILKGR 501
Query: 397 QGQLF--QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------ 442
+ Q +L +L+ L+ + + IRR L LP K ++
Sbjct: 502 DAEATEKQQQEANEKLSQLSALVSRFI-IRRTNDLLSKYLPVKYEHVVFCKMSAFQLDLY 560
Query: 443 RLLLKRSEI--------VSAKAAVGVINDSEKDATNDKTPKD---SDEHDDSGACCRLGK 491
RL ++ EI A+G++ P D S+E+ R +
Sbjct: 561 RLFIRSPEIKKLLRGTGSQPLKAIGILKKLCNHPDLLDLPNDLEGSEEYFPEAYTPRDRR 620
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
EL K+ + +L + A S+ +K+++ +++ + LD +
Sbjct: 621 YVNPELS-GKMMVLQRFLET--IRATSN-----------DKIVLISNYTQTLDVFERMCR 666
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
G R+DG RQ V F + I ++ AGG GL+ A +V +
Sbjct: 667 ANRWGMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRLVLFDPD 726
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+P+ QA R R GQ + +Y F A + +E Q + S + DA +
Sbjct: 727 WNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCVVDEAQDAAR 786
Query: 671 EIAVEGVSYL 680
+ E + L
Sbjct: 787 HFSGEDLRAL 796
>gi|338733918|ref|YP_004672391.1| hypothetical protein SNE_A20230 [Simkania negevensis Z]
gi|336483301|emb|CCB89900.1| putative uncharacterized protein [Simkania negevensis Z]
Length = 1234
Score = 113 bits (282), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 119/520 (22%), Positives = 226/520 (43%), Gaps = 55/520 (10%)
Query: 144 NSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKLPKSLLDV--- 200
N +E+ + W+ L E ++ TG E + E++++M LL++
Sbjct: 706 NGQSVELTTLEWIRLRTYEDVTRP--TGN---SEKEKRTRELLEQMDSFESAELLNLDAL 760
Query: 201 ---ILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCP 251
+ P+Q GV+ F G L+ D+MGLGKT QA+A+ A A VVCP
Sbjct: 761 ESTLRPYQEVGVKWLWFLYSYGLSGLLCDDMGLGKTHQAMALLAAASHAKEKAKFFVVCP 820
Query: 252 AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQ 311
+ W E L R+LP + + +G + + +++ SY L + ++ +
Sbjct: 821 TSVIYHWEELLSRFLP---SLKVVVFYGTQRSLKAFNIKADLLLTSYGTLRSEKDAISKI 877
Query: 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371
+ + I DE+ + + S+ + A + K+ L+GTP +R ++ +++
Sbjct: 878 PFDVAIFDETQIAKNMQ--SQTHQALAAVKAGTKIG----LTGTPIENRLLELKALFDVV 931
Query: 372 WPGLL-GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430
PG L +A+Y + ++ YQ + ++L L ++RR K +
Sbjct: 932 LPGYLPSQAQY----REHFINPIEKYQDK---------EKKQLLAKLIHPFVLRRKKSEV 978
Query: 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490
L LP K +I R L ++ K A D DK + H +
Sbjct: 979 LDDLPEKIEEIARCELSEEQLKLYKEAYVKSRDKLLKEMKDKQSEIPYLHVFALLNTLKQ 1038
Query: 491 KISYQELGIAKLSGFRE-----WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545
++ L + ++ ++E W +++E+ + K+++F +L ++
Sbjct: 1039 ICNHPSLILKDIANYKEHQSGKWDLFVELLSETRASG--------QKLVVFTQYLDMMKI 1090
Query: 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605
++ + E GIGF I G+T +DR+ + +F+ E ++ + + A G G+D ++A V+
Sbjct: 1091 IESHLKEHGIGFAAIRGST--QDRKKQLETFRDDPECEVFVASLKAAGTGIDLTAASVVI 1148
Query: 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ +P+ QA DR HR GQ V ++ K T +E
Sbjct: 1149 HYDRWWNPAKENQATDRVHRIGQNRGVQVFKMVTKRTVEE 1188
>gi|42520462|ref|NP_966377.1| SNF2 family helicase [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410201|gb|AAS14311.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 1175
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 205/472 (43%), Gaps = 61/472 (12%)
Query: 194 PKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC-----FISAGS 245
P +L+ + P+Q G + + G +IAD+MGLGKTLQ IA C F+
Sbjct: 703 PNNLIAQLRPYQERGFSWLVQNIENGFGSIIADDMGLGKTLQVIAAILCCKNTGFLDRDR 762
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+LVV P + +W E+ER+ P ++ L H N L V + SY + R +
Sbjct: 763 VLVVAPTSILSNWQREMERFAP-----ELKLFVYHGQNR-ELASDYDVALTSYGLARRDK 816
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR---PY 362
K + + W LL++DE+ ++ + E+ KA+ +AAK K + +SGTP +R +
Sbjct: 817 KELNKIRWFLLVIDEAQNI----KNPNTEQTKAIKTIAAKHK--IAMSGTPVENRLLEYW 870
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
IF IN + G + K FA + + F K + M
Sbjct: 871 SIFDFINKSYLGTPKQFKSSFA-----TPIEKARDKTCLERFMK----------ITSPFM 915
Query: 423 IRRLK--QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
+RRLK + ++ LP K ++ + S + + D T +K K S+
Sbjct: 916 LRRLKSDKSIIQDLPDK--------IENNRYCSLTSEQTALYQKVVDTTMEKIEK-SEGI 966
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------IDVNPRSNKMI 534
+ G +L Q G ++ SI E G I + + K +
Sbjct: 967 ERKGLIFKLINALKQICNHPSQFGKKKRASI-----EQSGKMQMLEEILISIGEVAEKSL 1021
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIAIIGITAGG 593
IF + ++ + + + E+ V L R R + ++ FQ + I I+ + AGG
Sbjct: 1022 IFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGG 1081
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A +V+ +L +P++ QA DRA+R GQ V +Y + T +E
Sbjct: 1082 TGLNLTAANHVIHYDLWWNPAVEAQATDRAYRIGQERNVMVYRLLSTGTFEE 1133
>gi|373486989|ref|ZP_09577659.1| SNF2-related protein [Holophaga foetida DSM 6591]
gi|372010456|gb|EHP11063.1| SNF2-related protein [Holophaga foetida DSM 6591]
Length = 1353
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 223/472 (47%), Gaps = 67/472 (14%)
Query: 192 KLPKSLLDVILPFQLEGVRFGLRRG----GRCLIADEMGLGKTLQAIAIAACFISAGSIL 247
+LP+ + +Q+EG R+ R G CL AD+MGLGKT+Q +++ G L
Sbjct: 893 ELPEDFRADLRQYQVEGYRWMQRLAFAGLGACL-ADDMGLGKTVQTLSMLQARAGEGPAL 951
Query: 248 VVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPRVVVISYTMLHRLRK 306
V+ P + +W E E++ P IH G R+ + V+V SY +L +
Sbjct: 952 VLAPTSVCPNWTLEAEKFAP---KLRIHRFGEGDRDQTLQSAGPFDVIVCSYGLLQLEAE 1008
Query: 307 SMIEQDWALLIVDESHHVR--CSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP---SLSRP 361
+ + W +++DE ++ +KR+ +AV+++ + + +LLSGTP L+
Sbjct: 1009 RLQQVAWGTVVLDEGQAIKNAFTKRS------QAVMELQSGFR--LLLSGTPVENHLAEL 1060
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL--LKQ 419
+++FH +N PGLLG T++ ++ + + + + L L +
Sbjct: 1061 WNLFHFLN---PGLLG--------------TLEQFRKRFQEPVERDLDENALGRLRRIVS 1103
Query: 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----AVGVINDSEKDATNDKTPK 475
++RRLK +L +LP + + L E+ +A ++ + +SE A
Sbjct: 1104 PFLLRRLKTEVLKELPERTEITLELEPTPQELGFLEALRRESLASLENSEGQALQVLAAL 1163
Query: 476 DSDEHDDSGACCRLGKISYQELGI--AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKM 533
ACC K+ + L I AKL F E + ++ ++
Sbjct: 1164 TRLRR----ACCN-AKLVQENLDIPSAKLEAFLELVD--------------ELRENGHRA 1204
Query: 534 IIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593
++F+ + L ++ + ++GI + +DG+T R R +AV +FQ + E ++ +I + AGG
Sbjct: 1205 LVFSQFVDHLGLLRHALDQRGISYQYLDGSTPARKRAAAVKAFQ-AGEGELFLISLKAGG 1263
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A V+ ++ +P++ QA DRAHR GQT V +Y K + ++
Sbjct: 1264 TGLNLTAADYVIHMDPWWNPAVEDQASDRAHRMGQTRPVTVYRLVLKGSVEQ 1315
>gi|386773260|ref|ZP_10095638.1| DNA/RNA helicase, superfamily II, SNF2 family protein
[Brachybacterium paraconglomeratum LC44]
Length = 1103
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 125/496 (25%), Positives = 215/496 (43%), Gaps = 67/496 (13%)
Query: 193 LPKSLLDVILPFQLEG---VRFGLRRGGRCLIADEMGLGKTLQAIAIAACF----ISAGS 245
LP+ L + P+Q EG + +G ++AD+MGLGKT+Q +A+ A SA
Sbjct: 633 LPRGLQTELRPYQREGFAWLAMLFDQGLGGVLADDMGLGKTVQTLALIAHAREQSPSAPP 692
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV--VVISYTMLHR 303
LVV PA + W E ER+ P + R F V VV SY +L
Sbjct: 693 FLVVAPASVLPVWRREAERFAPGLHVRVLEGTSASRGGAAE-EAFEGVDLVVTSYAVLRL 751
Query: 304 LRKSMIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + + ++DE+ V R S+ + V+A + +A ++GTP +
Sbjct: 752 DEELFASRRFQGFVLDEAQFVKNRRSRTHLAAKRVRAGMRLA--------ITGTPMENSL 803
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421
D++ ++++ PGLLG A F K + + G Q + + +R
Sbjct: 804 DDLWAILDLVAPGLLGTA-IGFRKRFT-LPIATGEAPQRMEQLRRRIR----------PF 851
Query: 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHD 481
++RR K+ + +LP K +++ + L +A + E+ D D
Sbjct: 852 LLRRTKELVAKELPEKHEEVLTVTLSPEH----RAVYDSVLQRERKKVLGLIDTDLD--- 904
Query: 482 DSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI-------------DVNP 528
R I ++ L + ++ L++ P + +++ AD+ +
Sbjct: 905 ------RSRFIVFRSLTLLRM------LALDPSLVDAEEYADVPSSKLEALFDRLEEAIG 952
Query: 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588
+++++F+ LD V +S +GI F +DG+T RDR +AV F+ + + +I
Sbjct: 953 DGHRVLLFSQFTTYLDRVAGELSARGIDFAHLDGST--RDRDAAVSGFR-DGDAPVFLIS 1009
Query: 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648
+ AGG GL + A V L+ +P+ QA DRAHR GQ V +Y A+DT +E
Sbjct: 1010 LKAGGFGLTLTEADYVFLLDPWWNPAAENQAVDRAHRIGQDRQVMVYRMIAEDTIEEKVL 1069
Query: 649 QNLNKSLRCVSSATNG 664
+ S T+G
Sbjct: 1070 ALQRRKAELFDSLTDG 1085
>gi|410028075|ref|ZP_11277911.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 976
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 222/480 (46%), Gaps = 77/480 (16%)
Query: 193 LPKSLLDVILPFQLEG---VRF-GLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GS 245
LP + + P+Q G +RF R G CL AD+MGLGKT+Q +A+ A A +
Sbjct: 510 LPLTFKGELRPYQKAGYNWLRFLNEYRFGGCL-ADDMGLGKTVQTLALLAHEKEANPDAT 568
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR--VVVISYTMLHR 303
L+V P L +W E ++ P L + RF + +V+ SY +
Sbjct: 569 SLLVMPTSLIYNWELEARKFTPKLKI----LTYTGTQRLKDNARFAKYDLVLTSYGITRM 624
Query: 304 LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV--KAVLDVAAKVKRIVLLSGTPSLSRP 361
+ + +I+DES ++ P + KAV ++ + + ++L+GTP +
Sbjct: 625 DVDILKGFYFNYVILDESQAIK------NPGSIISKAVNELNCRQR--LILTGTPVENGT 676
Query: 362 YDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG-YQGQLFQDFSKG---VRLEELNVLL 417
D++ Q+N + GLLG QG ++ Q Q K V+ +L+ ++
Sbjct: 677 MDLWSQMNFINRGLLGS---------------QGMFKKQFLQPIEKKNDMVKAAKLHAMI 721
Query: 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDS 477
K ++ RRLK + LP K +I + KA V + N+ T
Sbjct: 722 KPFIL-RRLKTQVATDLPEK---VINVKYSTMTADQEKAYEEVKGYYREKIVNEMT---- 773
Query: 478 DEHDDSGACCRLGKISYQELGIAK-LSGFREWLSIHPVIAESDGAADI----DV------ 526
+ + Q+ + + L+ R+ ++ HP + + D DV
Sbjct: 774 -----------IPGLRNQQFTLLRGLTQLRQ-IANHPRLTDKTYKGDSGKLEDVIHMLEA 821
Query: 527 -NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585
+K+++F+ ++ L V+E++ E+ + + +DG+T +DRQ+ V +FQ ++ VKI
Sbjct: 822 TASEGHKVLVFSQFVRHLGIVREYLDEQNMKYAYLDGST--KDRQAQVRAFQENDAVKIF 879
Query: 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+I + AGGVGL+ + A+ V L+ +P++ QA DRAHR GQ + V IY F +T +E
Sbjct: 880 LISLKAGGVGLNLTKAEYVFLLDPWWNPAVEAQAIDRAHRIGQENKVMIYKFITHNTVEE 939
>gi|225630349|ref|YP_002727140.1| helicase, SNF2 family [Wolbachia sp. wRi]
gi|225630743|ref|YP_002727534.1| helicase, SNF2 family [Wolbachia sp. wRi]
gi|225592330|gb|ACN95349.1| helicase, SNF2 family [Wolbachia sp. wRi]
gi|225592724|gb|ACN95743.1| helicase, SNF2 family [Wolbachia sp. wRi]
Length = 1175
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 205/472 (43%), Gaps = 61/472 (12%)
Query: 194 PKSLLDVILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAAC-----FISAGS 245
P +L+ + P+Q G + + G +IAD+MGLGKTLQ IA C F+
Sbjct: 703 PNNLIAQLRPYQERGFSWLVQNIENGFGSIIADDMGLGKTLQVIAAILCCKNTGFLDRDR 762
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR 305
+LVV P + +W E+ER+ P ++ L H N L V + SY + R +
Sbjct: 763 VLVVAPTSILSNWQREMERFAP-----ELKLFVYHGQNR-ELASDYDVALTSYGLARRDK 816
Query: 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR---PY 362
K + + W LL++DE+ ++ + E+ KA+ +AAK K + +SGTP +R +
Sbjct: 817 KELNKIRWFLLVIDEAQNI----KNPNTEQTKAIKTIAAKHK--IAMSGTPVENRLLEYW 870
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
IF IN + G + K FA + + F K + M
Sbjct: 871 SIFDFINKSYLGTPKQFKSSFA-----TPIEKARDKTCLERFMK----------ITSPFM 915
Query: 423 IRRLK--QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEH 480
+RRLK + ++ LP K ++ + S + + D T +K K S+
Sbjct: 916 LRRLKSDKSIIQDLPDK--------IENNRYCSLTSEQTALYQKVVDTTMEKIEK-SEGI 966
Query: 481 DDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAAD------IDVNPRSNKMI 534
+ G +L Q G ++ SI E G I + + K +
Sbjct: 967 ERKGLIFKLINALKQICNHPSQFGKKKRASI-----EQSGKMQMLEEILISIGEVAEKSL 1021
Query: 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRD-RQSAVHSFQLSNEVKIAIIGITAGG 593
IF + ++ + + + E+ V L R R + ++ FQ + I I+ + AGG
Sbjct: 1022 IFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNLFQSNILIVSLKAGG 1081
Query: 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GL+ ++A +V+ +L +P++ QA DRA+R GQ V +Y + T +E
Sbjct: 1082 TGLNLTAANHVIHYDLWWNPAVEAQATDRAYRIGQERNVMVYRLLSTGTFEE 1133
>gi|432106413|gb|ELK32206.1| DNA repair and recombination protein RAD54B [Myotis davidii]
Length = 817
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 146/553 (26%), Positives = 234/553 (42%), Gaps = 101/553 (18%)
Query: 172 RWNPCRPEHL----SDEVVDEMIGKLPKSLLDVIL---------PFQLEGVRF------G 212
R +PC P L D+ M K ++DV++ P Q EG+ F G
Sbjct: 160 RHDPCAPNSLVMPRPDKNHQWMFNKNCFPVVDVVIDPHLAYYLRPHQKEGLIFLYECVMG 219
Query: 213 LRRGGRC--LIADEMGLGKTLQAIAIAACFISAG---------SILVVCPAILRLSWAEE 261
+R GRC ++ADEMGLGKTLQ I++ G L+V P L +W E
Sbjct: 220 MRVNGRCGAILADEMGLGKTLQCISLLWTLQCQGPYGGKPIIKKTLIVTPGSLVNNWRRE 279
Query: 262 LERWLP------FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWAL 315
++WL F + D H V +P++ V++ISY ML R + + L
Sbjct: 280 FQKWLGSERIKIFTVDQD-HKVEEFIKSPLY-----SVLIISYEMLLRSLDQIKNIKFDL 333
Query: 316 LIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGL 375
LI DE H ++ S + A++ +A + KRI+L +GTP + + F I+ + PG+
Sbjct: 334 LICDEGHRLK----NSAIKTTTALISLACE-KRIIL-TGTPVQNDLQEFFALIDFVNPGI 387
Query: 376 LGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435
LG F K Y + V +D G R V +RR ++ + LP
Sbjct: 388 LGSLS-SFRKIYEEPIIVSRQPSASKEDKELGERRAAELVCFTGLFFLRRTQEVINKYLP 446
Query: 436 PK---------------------RRQIIRLLLKRS-----EIVSAKAAVGVIN------D 463
PK Q +R L+ S ++ A + N +
Sbjct: 447 PKIENVVFCRPGALQLELYQKLLNSQAVRFCLQGSLENSPHLICIGALKKLCNHPCLLFN 506
Query: 464 SEKDATNDKTPKDSDEHDDSGACCRLGKI---SYQELGIA-KLSGFREWLS-IHPVIAES 518
S K+ T DEH++S L + Y L K SG + L+ + VI E
Sbjct: 507 SIKEKECSST---WDEHEESSLYEGLLNVFPADYNPLMFTEKESGKLQVLTKLLAVIHE- 562
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSF-- 576
+ P ++++++ +++ + L+ +QE G R+DG T RQ V F
Sbjct: 563 -------LRP-TDRVVLVSNYTQTLNILQEVCKRHGYACTRLDGQTPVSQRQQIVDGFNS 614
Query: 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636
+ S++ I ++ AGGVGL+ +++ ++ +P+ +QA R R GQ V+IY
Sbjct: 615 KYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYR 673
Query: 637 FCAKDTTDESHWQ 649
T +E +Q
Sbjct: 674 LLTTGTIEEKIYQ 686
>gi|167527295|ref|XP_001747980.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773729|gb|EDQ87367.1| predicted protein [Monosiga brevicollis MX1]
Length = 760
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 154/632 (24%), Positives = 258/632 (40%), Gaps = 98/632 (15%)
Query: 73 RVRLEICSPDSFSVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKL 132
+V L D +TPL + E LG+ +P H T N+ G V +L
Sbjct: 46 KVHLPPFMADRKPLTPLNGNEVITAHEARIFGILGKPFKSPLPGHTTDNSRRGLG-VRRL 104
Query: 133 RDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKLSHSIDTGRWNP-CRPEHLSDEVVDEMIG 191
P+ ++A + P + NP R +H VVD ++G
Sbjct: 105 TLRQPLHDPDDDAAVVLYRPPPLSAADAS------------NPEIRNKHPVAVVVDPILG 152
Query: 192 KLPKSLLDVILPFQLEGVRF------GLRRGGR--CLIADEMGLGKTLQAIAIA------ 237
+ P Q+EGV+F GL+ G ++AD MGLGKTLQ + +
Sbjct: 153 A-------KLRPHQIEGVQFLYDCVTGLKIPGYHGAIMADGMGLGKTLQNVTLTWTLLKQ 205
Query: 238 --ACFISAGSILVVCPAILRLSWAEELERWLP---FCLPADIHL---------VFGHRNN 283
C + ++VCP+ L +W+ E +WL LP D FG +
Sbjct: 206 SPECRPTLTKAVIVCPSSLVKNWSNEFRKWLGDRVSTLPIDNGASDEIDKKLRYFGSASG 265
Query: 284 PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343
P+V++ISY L R ++Q ++I DE H ++ SE + +A++ A
Sbjct: 266 RAA----PQVLIISYETL-RGHIHALDQPVGIVICDEGHRLK----NSENQTYRALM--A 314
Query: 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLF-- 401
K +R V+LSGTP + + + + + PGLLG A +F K + ++ ++G
Sbjct: 315 LKTERRVILSGTPVQNELLEYYALLEFVNPGLLGSAG-EFRKKF-EIPILRGRDADATAQ 372
Query: 402 -QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGV 460
Q+ + +L E+ V L +IRR L LPPK ++ L ++ K +
Sbjct: 373 EQELGQ-TKLNEM-VELVNRCLIRRTSDILSKYLPPKIEAVVCCRLTGLQLDMYKRLI-- 428
Query: 461 INDSEKDATNDKTPKDSDEHDDSGA-------------CCR-----LGKISYQELGIAKL 502
DS+ A D P +++ G+ C + KI +E G AKL
Sbjct: 429 --DSQAIALEDDGPGKTNQKKSGGSGPTPLAFITHLKKLCNHPELIMDKIQAREPGFAKL 486
Query: 503 SGF--REWLS--IHP----VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG 554
+W S + P + D + + K+++ +++ + LD + ++
Sbjct: 487 QDLVPAKWDSRVVSPEWSGKVMVVDAMLAMLKSTTDEKVVLISNYTQTLDLFERLCRQRR 546
Query: 555 IGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAIIGITAGGVGLDFSSAQNVVFLELPQSP 613
+VR+DG + RQ V F + I ++ AGG G++ A ++ + +P
Sbjct: 547 YKYVRLDGTMSIKKRQKVVDHFNAPDSDDFIFMLSSKAGGCGINLIGASRLILTDPDWNP 606
Query: 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
+ QA R R GQ +Y A T +E
Sbjct: 607 ASDAQALARCWRDGQRRITYVYRLVATGTIEE 638
>gi|449018067|dbj|BAM81469.1| DNA repair and recombination protein RAD26 [Cyanidioschyzon merolae
strain 10D]
Length = 917
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 117/478 (24%), Positives = 208/478 (43%), Gaps = 52/478 (10%)
Query: 193 LPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACF----ISAGS 245
LP+SL + + P+Q EG+ + +G ++ DEMGLGKT+Q IA A + G
Sbjct: 179 LPRSLYERLFPYQKEGLVWLWSLHVQGTGGILGDEMGLGKTVQIIAFLAALDYSGLLKGP 238
Query: 246 ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLH-RL 304
ILVV P + W ELE W P +H V G + + + P V+ H R+
Sbjct: 239 ILVVAPVTVLDQWRRELETWWPRLQVRVLHAVLGIGESALQPNQCPSQVIFITNYEHLRI 298
Query: 305 RKS-MIEQDWALLIVDESHHVRCSKRTSEPE-EVKAVLDVAAKVKRIVLLSGTPSLSRPY 362
S + W +I+DE H +R PE EV V V RI L++G P +R
Sbjct: 299 HASWFTSRRWDYVILDEGHRIR------NPEAEVTRVCKQLNTVHRI-LMTGAPLQNRLC 351
Query: 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422
+++ + ++PG LG + F + + ++ G+ R L +
Sbjct: 352 ELWSLFDFIYPGRLGTLQ-SFEEEFSIPISLGGFANATPAQVHIAYRCASTLRDLIAPYL 410
Query: 423 IRRLKQHLLVQLPPKRRQII--RLLLKRSEIVS--------AKAAVGVIN-----DSEKD 467
+RRLK+ + +QLP K+ ++ RL ++ I +AA G +N + +
Sbjct: 411 LRRLKRDVALQLPQKQEHVLLCRLTPEQRRIYQNYLNAIDVERAADGQLNLLPIITTLRK 470
Query: 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVN 527
N +D H +S E + + S + L++ ++ + +
Sbjct: 471 ICNHPRLAAADLH-----------VSGSERKLLRQSTSGKLLALDRLLHQ--------LR 511
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587
+++ +IF+ +L +++ +++ ++R+DG T R V F + + ++
Sbjct: 512 ETNHRALIFSQTRSMLTLLEKTLNKGQFTYLRMDGETNVALRAELVDRFNHDSSIFAFLL 571
Query: 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
GG+GL+ A V+ + +P+ QA +RA R GQ V +Y + T +E
Sbjct: 572 TTRVGGLGLNLIGADRVIIYDPDWNPASDTQARERAWRIGQERPVVVYRLLTRGTIEE 629
>gi|344244841|gb|EGW00945.1| Zinc finger Ran-binding domain-containing protein 3 [Cricetulus
griseus]
Length = 723
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 79/139 (56%)
Query: 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591
K ++FAHHL +L E + E ++RIDG+ +R V+ FQ ++AI+ I A
Sbjct: 28 KFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHLVNQFQKDPNTRVAILSIQA 87
Query: 592 GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651
G GL F++A +VVF EL P + QAEDRAHR GQ S+VNI+ A T D W L
Sbjct: 88 AGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAML 147
Query: 652 NKSLRCVSSATNGKYDALQ 670
N+ + S NG+ + LQ
Sbjct: 148 NRKAQVTGSTLNGRKERLQ 166
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 892 KEYTQGWTINDEPLCKLCQK-TCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGRFLREEL 950
K Y Q +PLC CQ TC+ ++ FC+L C EE+ +R++ +LR ++
Sbjct: 538 KGYIQAVDKEGKPLCLRCQHPTCQPVQGSKTSTWDSRFCSLKCQEEFWIRSNNSYLRAQV 597
Query: 951 FRIEHGVCTNCQLDCHKLVKHIKPLSLEQRRKYI 984
F EHGVC C ++ +L ++ QR+ +
Sbjct: 598 FATEHGVCQLCSMNAQELFLRVRDAPKSQRKNLL 631
>gi|388854041|emb|CCF52385.1| probable RAD54-DNA-dependent ATPase of the Snf2p family [Ustilago
hordei]
Length = 865
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 131/550 (23%), Positives = 229/550 (41%), Gaps = 84/550 (15%)
Query: 185 VVDEMIGKLPKSLLDVILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAI 236
V+D +GK V+ P Q+EGV+F R C++ADEMGLGKTLQ I +
Sbjct: 272 VIDPRLGK-------VLRPHQVEGVKFLYRCTTGLIVENAYGCIMADEMGLGKTLQCITL 324
Query: 237 AACFISAGSI---------LVVCPAILRLSWAEELERWLPFCLPADIHLVFG-HRNNPVH 286
+ I ++VCP+ L +WA EL +WL P ++ L ++ +
Sbjct: 325 MWTLLKQSPIAGKSTIDKCIIVCPSSLVRNWANELIKWLGAAAPGNLALDGKLSKDEMIE 384
Query: 287 LTR----------FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV 336
TR V+++SY L L++ + + LL+ DE H + + ++
Sbjct: 385 ATRRWCNASGRAITQPVMIVSYETLRNLQEELGNTEVGLLLCDEGHRL----KNADSLTF 440
Query: 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396
+A+ + KV+R V+LSGTP + + F +N P LLG ++ DF K + ++ ++G
Sbjct: 441 QALTQI--KVRRRVILSGTPIQNDLSEYFALLNFANPELLG-SRIDFRKNF-EIAILKGR 496
Query: 397 QGQLF--QDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------ 442
+ Q +L +L+ L+ + + IRR L LP K ++
Sbjct: 497 DSEATEKQQQEANEKLAQLSALVSRFI-IRRTNDLLSKYLPVKYEHVVFCKMAPFQLDLY 555
Query: 443 RLLLKRSEI--------VSAKAAVGVIN---DSEKDATNDKTPKDSDEHDDSGACCRLGK 491
RL ++ EI A+G++ + S+++ G R +
Sbjct: 556 RLFIRSPEIKKLLRGTGSQPLKAIGILKKLCNHPDLLDLPSDLDGSEQYFPEGYTPRDRR 615
Query: 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551
EL K+ + +L + A ++ +K+++ +++ + LD +
Sbjct: 616 HVNPELS-GKMMVLQRFLET--IRATTN-----------DKIVLISNYTQTLDVFERMCQ 661
Query: 552 EKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP 610
G R+DG RQ V F + I ++ AGG GL+ A +V +
Sbjct: 662 ANRWGMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRLVLFDPD 721
Query: 611 QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQ 670
+P+ QA R R GQ + +Y F A + +E Q + S + DA +
Sbjct: 722 WNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCVVDEAQDAAR 781
Query: 671 EIAVEGVSYL 680
+ E + L
Sbjct: 782 HFSGEDLRAL 791
>gi|225164937|ref|ZP_03727151.1| Non-specific serine/threonine protein kinase [Diplosphaera
colitermitum TAV2]
gi|224800459|gb|EEG18841.1| Non-specific serine/threonine protein kinase [Diplosphaera
colitermitum TAV2]
Length = 940
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 204/466 (43%), Gaps = 62/466 (13%)
Query: 200 VILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGS------ILVVC 250
V+ P+Q GV + +G L+ADEMGLGKTLQ IA+ AG LVVC
Sbjct: 467 VLRPYQRRGVEWLHHLCDKGCHGLLADEMGLGKTLQIIALLMTRPVAGDDGKPLPTLVVC 526
Query: 251 PAILRLSWAEELERWLPFCLPADIHLV-FGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI 309
PA + W EE+ER+ P + L+ G+ N H T P+V + S+T L + R +
Sbjct: 527 PASVVPVWCEEIERFWPGT---RVELLKNGNDFNARHTTP-PQVWIASFTQLRKHRALLD 582
Query: 310 EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369
+ + ++DE ++ P+ A + + ++L+GTP +R D++
Sbjct: 583 DHPFGYAVLDEGQFIK------NPDAKVTQTCFAIRARHRIVLTGTPLENRQLDLWSIFR 636
Query: 370 MLWPGLLG-KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428
L PGLLG + ++ A T+Q + QL ++RR K
Sbjct: 637 YLLPGLLGTRLTFEAALATDHAATMQRLRTQL------------------APFILRRTKD 678
Query: 429 HLLVQLPPK-RRQIIRLL--LKRSEIVSAKA-AVGVINDSEKDATNDKTPKDSDEHDDSG 484
+ +LPPK ++I L ++R+E A + + D A +K+
Sbjct: 679 EVAQELPPKVEMELISPLTEMQRTEYARICAEGLQRLGDDVSAAIREKS------FGLLA 732
Query: 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADI-----DVNPRSNKMIIFAHH 539
RL ++ + + R +A+S + + +V +K++IF+
Sbjct: 733 LLTRLRQVCCDPDMLPWIKDAR--------LADSGKISLLIERLAEVIANGHKVVIFSQF 784
Query: 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599
+ +L+ V++ ++ R + + DR V FQ ++ ++ + A G G+
Sbjct: 785 VMLLNRVRDALAHSFPDLPRYELTGMTLDRLKPVQGFQNADGAAAMLVSLKAAGTGITLH 844
Query: 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645
SA V L+ +P++ QA DR HR GQTS V +Y T +E
Sbjct: 845 SADYVFLLDPWWNPAVEAQAVDRVHRIGQTSTVFVYRMVTAGTIEE 890
>gi|449329864|gb|AGE96132.1| atpase component of the two-subunit chromatin remodeling factor
[Encephalitozoon cuniculi]
Length = 823
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/598 (22%), Positives = 253/598 (42%), Gaps = 116/598 (19%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P+ +L + +Q+EG+ + + C++ADEMGLGKTLQ IA
Sbjct: 46 PRFVLYELRDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKRH 105
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN------PVHLTRFPRVVVISYTM 300
L++ P +W E +++P + + + R + +R+ + +Y M
Sbjct: 106 LIILPKSTLANWKREFRKFMP---NYKVRVFYSSRKEMRREAEEIMSSRWD-ACLTTYEM 161
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R + W+ +++DE+H ++ +E + ++ + + R+ L++GTP +
Sbjct: 162 CINARSILNTVKWSYIVIDEAHRIK-----NEHSLLSKIVRIFSCDHRL-LITGTPLQNN 215
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
++++ +N + P + + D + + Y + D G + + +L Q
Sbjct: 216 VHELWALLNFIVPEI-----------FNDAEKFESYVMNI--DEGDGEAIRRIRSVL-QL 261
Query: 421 VMIRRLKQHLLVQLPPKR------------RQIIRLLLKR--SEIVSAKAAVGVI----- 461
+RR K + + LPPK+ R+ R+LLKR S + S + G++
Sbjct: 262 FFLRREKIDVEMSLPPKKIVNLYSKLSPMQREWYRMLLKRDLSPLGSTRDPKGMLMNVVM 321
Query: 462 ------NDSEKDATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
N + P +D+H ++SG L K+ +A L
Sbjct: 322 QLRKCCNHPYLFPDAEPKPYTNDKHIIENSGKMIVLDKL------LASLKA--------- 366
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++++IF+ +LD ++++ + + RIDG+T RDR A+
Sbjct: 367 ---------------KGSRVLIFSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRTEAI 411
Query: 574 HSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
F K + T AGG+G++ S+A V+ + +P + LQA+DRAHR GQ V
Sbjct: 412 DGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQV 471
Query: 633 NIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
++ +++T +E R V Y +LQ++ ++ + ++ S+
Sbjct: 472 VVFRLISENTVEE----------RIV-------YRSLQKLKLDDILLQGRYHRSSSVSQS 514
Query: 693 LTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETD 750
+D +A+ + E E + S I +E T +MN KL + TD T D
Sbjct: 515 ELIDILANGMEITE----DEGKDESIEDVIRRGEEKTREMNVKLCDFKITDTLNTNID 568
>gi|326329299|ref|ZP_08195624.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
gi|325952874|gb|EGD44889.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
Length = 907
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 131/510 (25%), Positives = 226/510 (44%), Gaps = 65/510 (12%)
Query: 181 LSDEVVDEMIG---KLPKSLLDVILPFQLEGVRF-----GLRRGGRCLIADEMGLGKTLQ 232
L DEV+ G +P L + +Q+EG+ + L GG CL AD+MGLGKTL
Sbjct: 412 LRDEVIAATSGPAVDVPPELQATLRGYQVEGLTWLAGITSLGLGG-CL-ADDMGLGKTLM 469
Query: 233 AIAIAACFIS--AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290
IA+ AG LVVCPA L +W EL R+ P V H + L
Sbjct: 470 TIALHLHRQKEHAGPTLVVCPASLLGNWEAELARFAPEVE------VRRHHGSERDLDGA 523
Query: 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350
VV+ +Y + R + + W L++ DE+ HV+ + + KA+ ++ + + V
Sbjct: 524 TGVVLTTYGTMRRDVELLSAVQWGLVVADEAQHVKNAASAT----AKALREIPSHAR--V 577
Query: 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410
L+GTP + +++ ++ PGLLG ++ F + + Q + D K
Sbjct: 578 ALTGTPVENNLTELWALLDWCVPGLLG-SRLAFRRAWAS-------QIEAGADVGKA--- 626
Query: 411 EELNVLLKQTVMIRRLKQ-HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469
+E L+ ++ RR + +LPPK L L R + V +A V ++A
Sbjct: 627 KEFAALVGPFLLRRRKSDPGVAPELPPKTETDHLLSLTREQAVLYEAFV-------RNAM 679
Query: 470 NDKTPKDSDEHDDSG-----------ACCRLGKISYQELGIAKLSGFREWLSIHPVIAES 518
D+D+ G C + QE G +++G + + + + +
Sbjct: 680 ERIERLDADDPQRRGLVLSLLTGLKQICNHPAQFLKQEAG--RITGRSQKIELLDELVST 737
Query: 519 DGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578
V S +++F ++ + ++ + G+ + G T +R V FQ
Sbjct: 738 -------VLAESGAVLVFTQYVAMARLLEAHWAASGVAHQFLHGGTPVAERSRMVERFQ- 789
Query: 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638
EV + ++ + AGGVGL+ + A +V+ ++ +P++ QA DRAHR GQT V ++
Sbjct: 790 EGEVPVFLLSLKAGGVGLNLTRADHVIHVDRWWNPAVEDQATDRAHRIGQTRTVQVHRLI 849
Query: 639 AKDTTDESHWQNLNKSLRCVSSATNGKYDA 668
+ T +E + L + R ++ A G +A
Sbjct: 850 TQGTVEERVAELLQRK-RVLADAVLGAGEA 878
>gi|260834763|ref|XP_002612379.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
gi|229297756|gb|EEN68388.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
Length = 1849
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 207/493 (41%), Gaps = 98/493 (19%)
Query: 204 FQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLS 257
+Q+EGV F C++ADEMGLGKT+Q+I G L++ P +
Sbjct: 149 YQMEGVNWLLFNWYNRRNCILADEMGLGKTVQSITFLKEIQEQGILGPFLIIAPLSTIAN 208
Query: 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLR-----------K 306
W E E W ++++V H ++ R ++ Y M HR +
Sbjct: 209 WQREFETW------TNVNVVVYHGSSAS------RQMIHRYEMFHRDELGNIIPECYKFQ 256
Query: 307 SMI--------------EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352
S+I + W +I+DE+H R R + E +LD+ +V LL
Sbjct: 257 SLITTYEVIISDCLELRDIPWRAVIIDEAH--RLKNRNCKLLEGLKILDLEHRV----LL 310
Query: 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412
+GTP + ++F +N L P ++ DF + D+KT ++ +
Sbjct: 311 TGTPLQNNVEELFSLLNFLEPDQFD-SEADFLSEFGDLKTED--------------QVSK 355
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQII------------RLLLKRSEIVSAKAAVGV 460
L LLK +M+RRLK+ + L PK II R +L+R+ AK
Sbjct: 356 LQALLK-PMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILERNFTFLAKGC--- 411
Query: 461 INDSEKDATNDKTPKDSDEHDDSGACCR----LGKISYQELGIAK-LSGFREWLSIHPVI 515
++ P + + CC + + LG K G +H ++
Sbjct: 412 -------GSSSNVPNLMNTMMELRKCCNHPYLINGAEEKILGEYKDQHGENHGKYLHCMV 464
Query: 516 AESDGAADID-----VNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ 570
S ID + +K++IF+ ++ LD +++++ + + RIDG RQ
Sbjct: 465 QASGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLVQNVYPYERIDGRVRGNLRQ 524
Query: 571 SAVHSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
+A+ F + + + T AGG+G++ ++A V+ + +P LQA+ R HR GQ+
Sbjct: 525 AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQS 584
Query: 630 SAVNIYIFCAKDT 642
+V +Y + T
Sbjct: 585 KSVKVYRLLTRAT 597
>gi|336365224|gb|EGN93575.1| hypothetical protein SERLA73DRAFT_171912 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377787|gb|EGO18947.1| hypothetical protein SERLADRAFT_453892 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1049
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/491 (23%), Positives = 224/491 (45%), Gaps = 55/491 (11%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSI 246
P + ++ P+QL+G+ + + G ++ADEMGLGKTLQ I+ + ++G
Sbjct: 137 PSFISGLMRPYQLQGLNWMVSLHHNGLNGILADEMGLGKTLQTISFLSYLKHYRDTSGPH 196
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVF-----GHRNNPVHLTRFPR---VVVISY 298
L+V P +WA E ERW P D+++V R + P+ V V SY
Sbjct: 197 LIVVPKSTLQNWAREFERWTP-----DVNVVVLTGTKEERAEIIANRLIPQDFEVCVTSY 251
Query: 299 TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV---KRIVLLSGT 355
+ + ++ + + +++DE+H ++ V ++L + + +L++GT
Sbjct: 252 EICLIEKSALKKFSFEYIVIDEAHRIK---------NVDSILSQIVRSFLSRGRLLITGT 302
Query: 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTV---QGYQGQLFQDFSKGVRLEE 412
P + ++F +N + P + Y D+ + + ++ SK V +E
Sbjct: 303 PLQNSLKELFALLNFICPEIFS--------DYADLDSFLHKDDEGAEGEEETSKKV-VEA 353
Query: 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK 472
L+ +L+ ++RR+K + L PK+ I + + +E+ + + + DA N
Sbjct: 354 LHKILR-PFLLRRVKSDVEKNLLPKKE--INIYIGLTEM--QRKWYRSVLQKDIDAVNGL 408
Query: 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADID-----VN 527
T K + +L K++ + + +I S +D +
Sbjct: 409 TGKKEGKTRLMNMVMQLRKVTCHPYLFDGAEPGPPYTTDEHIIENSGKMIILDKLLQSMQ 468
Query: 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586
+ ++++IF+ +VLD ++++ + + RIDG+T DR A+ + + K I +
Sbjct: 469 AKGSRVLIFSQMSRVLDILEDYCLFRSFKYCRIDGSTAHDDRIVAIDEYNKPDSEKFIFL 528
Query: 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646
+ AGG+G++ ++A V+ + +P LQA DRAHR GQT V ++ F +D+ +E
Sbjct: 529 LTTRAGGLGINLTTADIVILYDSDWNPQADLQAMDRAHRIGQTKQVYVFRFITEDSVEER 588
Query: 647 HWQNLNKSLRC 657
+ + LR
Sbjct: 589 MLERAAQKLRL 599
>gi|19074741|ref|NP_586247.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
gi|19069383|emb|CAD25851.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
Length = 823
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 132/598 (22%), Positives = 253/598 (42%), Gaps = 116/598 (19%)
Query: 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISAGSI---- 246
P+ +L + +Q+EG+ + + C++ADEMGLGKTLQ IA
Sbjct: 46 PRFVLYELRDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKRH 105
Query: 247 LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN------PVHLTRFPRVVVISYTM 300
L++ P +W E +++P + + + R + +R+ + +Y M
Sbjct: 106 LIILPKSTLANWRREFRKFMP---NYKVRVFYSSRKEMRREAEEIMSSRWD-ACLTTYEM 161
Query: 301 LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360
R + W+ +++DE+H ++ +E + ++ + + R+ L++GTP +
Sbjct: 162 CINARSILNTVKWSYIVIDEAHRIK-----NEHSLLSKIVRIFSCDHRL-LITGTPLQNN 215
Query: 361 PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420
++++ +N + P + + D + + Y + D G + + +L Q
Sbjct: 216 VHELWALLNFIVPEI-----------FNDAEKFESYVMNI--DEGDGEAIRRIRSVL-QL 261
Query: 421 VMIRRLKQHLLVQLPPKR------------RQIIRLLLKR--SEIVSAKAAVGVI----- 461
+RR K + + LPPK+ R+ R+LLKR S + S + G++
Sbjct: 262 FFLRREKIDVEMSLPPKKIVNLYSKLSPMQREWYRMLLKRDLSPLGSTRDPKGMLMNVVM 321
Query: 462 ------NDSEKDATNDKTPKDSDEH--DDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513
N + P +D+H ++SG L K+ +A L
Sbjct: 322 QLRKCCNHPYLFPDAEPKPYTNDKHIIENSGKMIVLDKL------LASLKA--------- 366
Query: 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV 573
+ ++++IF+ +LD ++++ + + RIDG+T RDR A+
Sbjct: 367 ---------------KGSRVLIFSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRTEAI 411
Query: 574 HSFQLSNEVKIAIIGIT-AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632
F K + T AGG+G++ S+A V+ + +P + LQA+DRAHR GQ V
Sbjct: 412 DGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQV 471
Query: 633 NIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSED 692
++ +++T +E R V Y +LQ++ ++ + ++ S+
Sbjct: 472 VVFRLISENTVEE----------RIV-------YRSLQKLKLDDILLQGRYHRSSSVSQS 514
Query: 693 LTLDQVASSDQFQELMKVPESSEASDFRAINTNDEITAKMNDKLLEESKTDHSPTETD 750
+D +A+ + E E + S I +E T +MN KL + TD T D
Sbjct: 515 ELIDILANGMEITE----DEGKDESIEDVIRRGEEKTREMNVKLCDFKITDTLNTNID 568
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,846,187,012
Number of Sequences: 23463169
Number of extensions: 691149702
Number of successful extensions: 1695558
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11165
Number of HSP's successfully gapped in prelim test: 5291
Number of HSP's that attempted gapping in prelim test: 1632798
Number of HSP's gapped (non-prelim): 37388
length of query: 997
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 844
effective length of database: 8,769,330,510
effective search space: 7401314950440
effective search space used: 7401314950440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)