Query 001912
Match_columns 997
No_of_seqs 506 out of 2682
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1000 Chromatin remodeling p 100.0 1E-89 2.2E-94 741.7 40.4 510 116-679 129-640 (689)
2 KOG0385 Chromatin remodeling c 100.0 3.8E-81 8.2E-86 705.6 32.7 450 193-665 159-623 (971)
3 KOG0387 Transcription-coupled 100.0 1.5E-78 3.3E-83 688.7 38.2 465 192-685 197-701 (923)
4 KOG0389 SNF2 family DNA-depend 100.0 3.8E-77 8.2E-82 676.1 34.1 466 193-671 390-918 (941)
5 KOG0392 SNF2 family DNA-depend 100.0 6.4E-77 1.4E-81 696.1 36.2 480 192-683 967-1496(1549)
6 KOG0384 Chromodomain-helicase 100.0 6E-76 1.3E-80 692.4 32.1 489 190-706 359-890 (1373)
7 PLN03142 Probable chromatin-re 100.0 1.5E-72 3.2E-77 691.3 39.1 436 192-665 161-623 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 1.5E-71 3.3E-76 641.9 28.4 461 192-667 607-1413(1958)
9 KOG0388 SNF2 family DNA-depend 100.0 2.6E-70 5.7E-75 608.5 30.6 458 192-665 559-1178(1185)
10 KOG0390 DNA repair protein, SN 100.0 2.8E-67 6.1E-72 616.0 36.6 460 192-681 230-747 (776)
11 KOG0386 Chromatin remodeling c 100.0 7.8E-66 1.7E-70 596.5 20.7 463 191-665 384-862 (1157)
12 KOG1002 Nucleotide excision re 100.0 6.6E-63 1.4E-67 532.2 28.7 473 191-682 175-790 (791)
13 KOG1015 Transcription regulato 100.0 3.1E-62 6.7E-67 556.9 33.4 487 189-684 657-1319(1567)
14 KOG4439 RNA polymerase II tran 100.0 9.1E-60 2E-64 527.7 30.3 465 192-681 317-899 (901)
15 PRK04914 ATP-dependent helicas 100.0 1.3E-57 2.8E-62 558.4 31.4 475 197-711 149-674 (956)
16 COG0553 HepA Superfamily II DN 100.0 1.6E-53 3.4E-58 543.6 29.9 461 195-680 333-862 (866)
17 KOG1016 Predicted DNA helicase 100.0 3.5E-51 7.6E-56 458.4 26.6 463 192-665 246-873 (1387)
18 KOG1001 Helicase-like transcri 100.0 1.3E-43 2.9E-48 420.4 20.0 423 218-663 154-672 (674)
19 TIGR00603 rad25 DNA repair hel 100.0 3E-37 6.6E-42 367.0 35.4 343 198-649 253-615 (732)
20 KOG0383 Predicted helicase [Ge 100.0 3.1E-36 6.6E-41 352.0 -0.7 366 192-595 284-696 (696)
21 PRK13766 Hef nuclease; Provisi 100.0 9.8E-32 2.1E-36 337.1 34.5 423 200-662 15-500 (773)
22 PHA02558 uvsW UvsW helicase; P 100.0 3.4E-31 7.3E-36 314.2 35.7 436 85-642 5-456 (501)
23 PF00176 SNF2_N: SNF2 family N 100.0 2.2E-32 4.7E-37 304.9 19.8 240 204-463 1-266 (299)
24 COG1111 MPH1 ERCC4-like helica 100.0 6.7E-31 1.5E-35 290.0 30.8 426 200-665 15-505 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.1E-28 4.5E-33 284.9 31.1 364 195-652 31-405 (442)
26 KOG0298 DEAD box-containing he 100.0 6.8E-28 1.5E-32 287.8 18.7 129 525-659 1216-1344(1394)
27 KOG0354 DEAD-box like helicase 99.9 8E-25 1.7E-29 255.7 31.2 416 200-650 62-536 (746)
28 PTZ00110 helicase; Provisional 99.9 1.2E-24 2.6E-29 260.1 32.7 320 199-641 151-484 (545)
29 PRK10590 ATP-dependent RNA hel 99.9 3.5E-24 7.7E-29 252.2 32.0 326 199-653 22-362 (456)
30 PRK11776 ATP-dependent RNA hel 99.9 8E-24 1.7E-28 250.1 34.2 315 199-641 25-349 (460)
31 PRK11192 ATP-dependent RNA hel 99.9 6E-24 1.3E-28 249.5 32.4 311 199-634 22-347 (434)
32 TIGR00614 recQ_fam ATP-depende 99.9 5.5E-24 1.2E-28 251.4 28.6 306 199-635 10-329 (470)
33 PRK04537 ATP-dependent RNA hel 99.9 1.2E-23 2.6E-28 252.5 30.3 309 198-632 29-357 (572)
34 PRK01297 ATP-dependent RNA hel 99.9 2.7E-23 5.8E-28 246.4 31.9 307 199-631 108-434 (475)
35 PRK04837 ATP-dependent RNA hel 99.9 1.8E-23 4E-28 244.4 30.0 313 199-640 29-361 (423)
36 PLN00206 DEAD-box ATP-dependen 99.9 3.4E-23 7.5E-28 246.9 30.8 329 199-655 142-487 (518)
37 TIGR00643 recG ATP-dependent D 99.9 6.3E-23 1.4E-27 249.8 32.5 372 184-704 223-622 (630)
38 PRK11634 ATP-dependent RNA hel 99.9 8.5E-23 1.8E-27 246.4 31.4 309 199-632 27-345 (629)
39 PRK11057 ATP-dependent DNA hel 99.9 7E-23 1.5E-27 248.3 29.2 301 199-632 24-336 (607)
40 TIGR01389 recQ ATP-dependent D 99.9 7.3E-23 1.6E-27 248.8 29.2 302 199-633 12-325 (591)
41 PRK10917 ATP-dependent DNA hel 99.9 1.4E-22 2.9E-27 248.4 31.7 373 185-706 250-647 (681)
42 COG1200 RecG RecG-like helicas 99.9 1.1E-22 2.5E-27 234.5 27.9 384 182-706 248-649 (677)
43 PTZ00424 helicase 45; Provisio 99.9 2.2E-22 4.7E-27 234.2 29.3 316 199-641 49-374 (401)
44 TIGR00580 mfd transcription-re 99.9 1E-22 2.2E-27 252.6 27.9 338 200-682 451-811 (926)
45 PRK10689 transcription-repair 99.9 3.4E-22 7.3E-27 253.0 30.1 336 200-682 600-960 (1147)
46 PRK02362 ski2-like helicase; P 99.9 4.6E-22 9.9E-27 247.2 29.6 323 199-640 22-396 (737)
47 KOG1123 RNA polymerase II tran 99.9 6.3E-23 1.4E-27 223.7 18.9 336 199-645 301-657 (776)
48 PLN03137 ATP-dependent DNA hel 99.9 3E-22 6.5E-27 244.3 26.1 306 199-636 459-784 (1195)
49 KOG0331 ATP-dependent RNA heli 99.9 5.3E-22 1.1E-26 226.0 25.6 314 199-632 112-441 (519)
50 PRK11448 hsdR type I restricti 99.9 4.1E-22 8.9E-27 251.4 26.8 356 199-638 412-815 (1123)
51 TIGR03817 DECH_helic helicase/ 99.9 3.3E-21 7.1E-26 237.1 29.5 333 199-649 35-394 (742)
52 KOG0330 ATP-dependent RNA heli 99.9 2.5E-21 5.3E-26 206.8 19.6 325 198-652 81-416 (476)
53 PRK01172 ski2-like helicase; P 99.9 6.5E-20 1.4E-24 226.4 31.8 312 200-637 22-374 (674)
54 PRK13767 ATP-dependent helicas 99.9 2.9E-20 6.4E-25 233.2 27.9 326 199-636 31-395 (876)
55 PRK00254 ski2-like helicase; P 99.9 1.8E-19 3.9E-24 223.5 32.8 318 199-642 22-389 (720)
56 COG0513 SrmB Superfamily II DN 99.9 9E-20 2E-24 216.3 28.8 332 198-654 49-392 (513)
57 COG1202 Superfamily II helicas 99.8 2.6E-19 5.5E-24 199.1 25.1 322 199-641 215-553 (830)
58 KOG0333 U5 snRNP-like RNA heli 99.8 4.6E-18 9.9E-23 187.8 23.8 332 200-633 267-618 (673)
59 TIGR01587 cas3_core CRISPR-ass 99.8 1.1E-17 2.4E-22 191.7 27.6 108 529-641 221-338 (358)
60 COG0514 RecQ Superfamily II DN 99.8 4.7E-18 1E-22 197.5 21.0 306 199-635 16-333 (590)
61 TIGR00348 hsdR type I site-spe 99.8 1.9E-17 4.1E-22 202.3 26.8 359 198-639 236-649 (667)
62 KOG0328 Predicted ATP-dependen 99.8 5.8E-18 1.2E-22 173.8 18.6 314 200-641 49-373 (400)
63 COG4096 HsdR Type I site-speci 99.8 5.2E-18 1.1E-22 198.2 20.3 348 194-638 159-545 (875)
64 TIGR03714 secA2 accessory Sec 99.8 7.9E-18 1.7E-22 201.5 21.7 100 528-632 422-530 (762)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.8 5.4E-17 1.2E-21 196.3 28.4 104 529-637 271-390 (844)
66 COG1201 Lhr Lhr-like helicases 99.8 2.5E-16 5.4E-21 189.6 30.0 323 198-646 20-365 (814)
67 PRK09401 reverse gyrase; Revie 99.8 1.8E-16 3.8E-21 201.8 29.3 297 198-627 78-432 (1176)
68 COG1204 Superfamily II helicas 99.7 9.9E-17 2.1E-21 195.6 25.2 352 200-630 31-397 (766)
69 KOG0335 ATP-dependent RNA heli 99.7 4.3E-17 9.2E-22 183.0 19.9 328 193-636 89-441 (482)
70 KOG0343 RNA Helicase [RNA proc 99.7 1.4E-16 3E-21 176.9 20.9 330 198-655 89-435 (758)
71 KOG0348 ATP-dependent RNA heli 99.7 4.6E-17 1E-21 180.1 16.6 335 200-635 159-550 (708)
72 TIGR03158 cas3_cyano CRISPR-as 99.7 4.6E-16 9.9E-21 177.2 25.4 314 204-624 1-357 (357)
73 PRK09751 putative ATP-dependen 99.7 6.1E-16 1.3E-20 197.4 28.8 96 529-626 243-371 (1490)
74 KOG0345 ATP-dependent RNA heli 99.7 5.2E-16 1.1E-20 170.0 23.5 315 198-636 26-361 (567)
75 PRK09200 preprotein translocas 99.7 4.6E-16 1E-20 188.3 25.4 114 528-650 426-547 (790)
76 COG1197 Mfd Transcription-repa 99.7 1.4E-15 3E-20 185.3 28.8 342 200-683 594-955 (1139)
77 TIGR00963 secA preprotein tran 99.7 4.8E-17 1E-21 193.6 15.2 104 527-634 402-512 (745)
78 KOG0336 ATP-dependent RNA heli 99.7 8.9E-17 1.9E-21 172.3 15.3 304 199-630 241-563 (629)
79 PHA02653 RNA helicase NPH-II; 99.7 1.7E-15 3.7E-20 182.5 28.3 108 530-643 395-516 (675)
80 PRK12898 secA preprotein trans 99.7 1E-15 2.2E-20 181.6 25.2 113 529-650 472-592 (656)
81 KOG0350 DEAD-box ATP-dependent 99.7 1.9E-16 4.1E-21 174.3 16.6 358 198-654 157-551 (620)
82 COG4889 Predicted helicase [Ge 99.7 2.9E-16 6.2E-21 181.1 18.5 375 192-639 153-586 (1518)
83 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2.4E-15 5.1E-20 185.5 27.2 304 207-641 8-336 (819)
84 KOG0342 ATP-dependent RNA heli 99.7 5.7E-16 1.2E-20 171.0 19.1 310 199-629 103-427 (543)
85 KOG4284 DEAD box protein [Tran 99.7 3.1E-16 6.7E-21 176.5 15.5 324 200-640 47-379 (980)
86 COG1205 Distinct helicase fami 99.7 5E-15 1.1E-19 183.3 27.3 334 200-649 70-430 (851)
87 KOG0338 ATP-dependent RNA heli 99.7 9.3E-16 2E-20 169.0 16.8 320 199-649 202-539 (691)
88 PF04851 ResIII: Type III rest 99.7 5.8E-16 1.3E-20 159.3 14.4 148 200-357 3-183 (184)
89 PRK11664 ATP-dependent RNA hel 99.7 5E-15 1.1E-19 183.0 25.2 306 207-643 11-341 (812)
90 TIGR01054 rgy reverse gyrase. 99.7 8.4E-15 1.8E-19 186.9 27.7 126 199-326 77-213 (1171)
91 KOG0332 ATP-dependent RNA heli 99.7 8.4E-15 1.8E-19 156.3 22.9 305 202-630 114-434 (477)
92 KOG0341 DEAD-box protein abstr 99.7 5.2E-16 1.1E-20 165.4 13.4 319 200-648 192-535 (610)
93 KOG0326 ATP-dependent RNA heli 99.7 3.2E-16 6.9E-21 163.6 11.2 299 200-629 107-419 (459)
94 KOG0340 ATP-dependent RNA heli 99.7 7.7E-15 1.7E-19 155.8 21.5 314 200-634 29-357 (442)
95 PRK05580 primosome assembly pr 99.7 2.3E-14 5E-19 175.4 29.1 150 199-357 143-305 (679)
96 PRK14701 reverse gyrase; Provi 99.6 3.5E-14 7.6E-19 184.7 28.4 126 200-326 79-214 (1638)
97 PRK09694 helicase Cas3; Provis 99.6 7.4E-14 1.6E-18 172.3 26.0 98 529-629 559-665 (878)
98 TIGR00595 priA primosomal prot 99.6 7.8E-14 1.7E-18 165.0 25.2 92 543-636 271-378 (505)
99 cd00079 HELICc Helicase superf 99.6 4.3E-15 9.3E-20 144.0 11.4 105 529-635 27-131 (131)
100 KOG0339 ATP-dependent RNA heli 99.6 3.1E-14 6.8E-19 156.8 18.8 321 199-644 244-578 (731)
101 KOG0346 RNA helicase [RNA proc 99.6 4.8E-14 1E-18 153.4 17.7 308 202-632 43-403 (569)
102 KOG0344 ATP-dependent RNA heli 99.6 6.7E-14 1.4E-18 158.4 18.6 316 198-635 156-492 (593)
103 PRK13104 secA preprotein trans 99.6 2.7E-13 5.9E-18 163.9 24.1 115 527-650 441-593 (896)
104 KOG0347 RNA helicase [RNA proc 99.6 3.9E-14 8.4E-19 157.7 15.0 332 200-634 203-564 (731)
105 PF00271 Helicase_C: Helicase 99.5 7.4E-15 1.6E-19 129.2 6.8 78 548-627 1-78 (78)
106 smart00487 DEXDc DEAD-like hel 99.5 1.3E-13 2.7E-18 143.0 14.2 158 199-359 7-173 (201)
107 KOG0334 RNA helicase [RNA proc 99.5 9.3E-13 2E-17 158.1 22.3 337 198-662 385-739 (997)
108 PRK12904 preprotein translocas 99.5 1.4E-12 3.1E-17 157.8 23.1 113 528-649 428-578 (830)
109 KOG0351 ATP-dependent DNA heli 99.5 7.5E-13 1.6E-17 163.0 19.3 308 199-636 263-589 (941)
110 PRK11131 ATP-dependent RNA hel 99.5 7.9E-12 1.7E-16 157.6 26.2 108 529-643 285-413 (1294)
111 PRK12906 secA preprotein trans 99.5 2.3E-12 5E-17 155.3 20.5 101 528-632 438-546 (796)
112 cd00046 DEXDc DEAD-like helica 99.4 5.2E-13 1.1E-17 130.1 11.9 134 218-356 2-144 (144)
113 PRK13107 preprotein translocas 99.4 5.6E-12 1.2E-16 152.2 22.8 115 527-650 446-597 (908)
114 KOG0327 Translation initiation 99.4 1.2E-12 2.6E-17 141.5 14.8 312 200-641 48-370 (397)
115 COG4098 comFA Superfamily II D 99.4 8.3E-11 1.8E-15 125.1 27.7 308 198-637 95-412 (441)
116 smart00490 HELICc helicase sup 99.4 4.9E-13 1.1E-17 118.1 8.2 81 545-627 2-82 (82)
117 TIGR01967 DEAH_box_HrpA ATP-de 99.4 6.4E-11 1.4E-15 150.0 28.7 107 530-643 279-406 (1283)
118 KOG0352 ATP-dependent DNA heli 99.4 1.4E-11 3.1E-16 133.6 18.9 330 203-645 23-366 (641)
119 KOG0952 DNA/RNA helicase MER3/ 99.4 3.4E-11 7.4E-16 143.6 23.0 350 201-641 111-491 (1230)
120 PF00270 DEAD: DEAD/DEAH box h 99.4 7E-12 1.5E-16 127.3 13.9 153 203-361 2-166 (169)
121 cd00268 DEADc DEAD-box helicas 99.3 1.1E-11 2.3E-16 130.2 14.7 153 200-357 21-185 (203)
122 KOG0951 RNA helicase BRR2, DEA 99.3 8.2E-11 1.8E-15 141.9 19.9 345 201-627 310-688 (1674)
123 KOG0947 Cytoplasmic exosomal R 99.3 4.8E-10 1E-14 132.4 22.8 144 200-356 297-444 (1248)
124 COG1203 CRISPR-associated heli 99.2 7.4E-10 1.6E-14 137.4 25.3 127 528-658 438-569 (733)
125 PRK12900 secA preprotein trans 99.2 9.4E-10 2E-14 133.7 22.3 114 528-650 596-717 (1025)
126 COG0556 UvrB Helicase subunit 99.2 2.1E-09 4.5E-14 120.7 22.5 122 528-652 444-570 (663)
127 KOG0353 ATP-dependent DNA heli 99.2 9.3E-10 2E-14 117.6 18.6 312 199-637 93-465 (695)
128 KOG0337 ATP-dependent RNA heli 99.1 1.3E-10 2.9E-15 126.4 10.3 321 196-642 39-369 (529)
129 PRK12326 preprotein translocas 99.1 2.3E-09 5E-14 127.0 21.1 116 527-651 424-554 (764)
130 COG4581 Superfamily II RNA hel 99.1 5E-09 1.1E-13 129.0 23.0 149 199-356 118-270 (1041)
131 PRK12899 secA preprotein trans 99.1 1.1E-08 2.4E-13 124.3 23.6 114 527-650 565-687 (970)
132 PRK13103 secA preprotein trans 99.1 5.2E-09 1.1E-13 127.0 19.4 106 527-636 446-588 (913)
133 KOG0948 Nuclear exosomal RNA h 99.0 2.7E-09 5.9E-14 123.3 15.7 141 200-355 129-275 (1041)
134 TIGR01407 dinG_rel DnaQ family 98.9 1E-07 2.2E-12 120.8 26.2 77 530-611 674-756 (850)
135 KOG1513 Nuclear helicase MOP-3 98.8 1.1E-07 2.4E-12 110.4 19.2 101 574-679 851-959 (1300)
136 PF13872 AAA_34: P-loop contai 98.8 1.5E-07 3.3E-12 101.5 19.2 164 192-358 27-222 (303)
137 COG1110 Reverse gyrase [DNA re 98.8 4.3E-07 9.4E-12 109.4 24.4 125 200-325 82-216 (1187)
138 KOG0950 DNA polymerase theta/e 98.8 1.3E-07 2.9E-12 113.2 19.5 157 200-360 223-391 (1008)
139 COG1198 PriA Primosomal protei 98.8 3.6E-07 7.7E-12 110.6 23.2 154 199-358 197-361 (730)
140 PRK12903 secA preprotein trans 98.8 3.8E-07 8.3E-12 110.0 22.6 115 527-650 423-545 (925)
141 TIGR00631 uvrb excinuclease AB 98.8 2.9E-08 6.2E-13 120.8 13.3 117 528-649 440-563 (655)
142 PRK05298 excinuclease ABC subu 98.7 7.8E-08 1.7E-12 117.8 13.9 109 528-641 444-557 (652)
143 KOG0349 Putative DEAD-box RNA 98.7 8.7E-08 1.9E-12 104.6 12.1 114 529-648 504-620 (725)
144 PF07652 Flavi_DEAD: Flaviviru 98.7 8.7E-08 1.9E-12 92.1 8.8 129 216-357 4-137 (148)
145 COG1643 HrpA HrpA-like helicas 98.6 5.1E-06 1.1E-10 102.2 24.8 110 529-644 258-390 (845)
146 PF02399 Herpes_ori_bp: Origin 98.6 2.8E-06 6.1E-11 102.1 21.8 321 219-636 52-385 (824)
147 COG0610 Type I site-specific r 98.6 1.3E-06 2.8E-11 110.9 19.6 134 217-360 274-417 (962)
148 KOG0949 Predicted helicase, DE 98.5 6.1E-06 1.3E-10 98.8 20.8 181 203-391 514-705 (1330)
149 PF13871 Helicase_C_4: Helicas 98.5 2.1E-07 4.6E-12 100.2 7.5 99 571-671 52-158 (278)
150 KOG0329 ATP-dependent RNA heli 98.5 1.7E-06 3.8E-11 88.8 13.1 149 201-355 65-226 (387)
151 CHL00122 secA preprotein trans 98.5 9.5E-06 2.1E-10 98.8 21.5 145 199-369 75-234 (870)
152 KOG0922 DEAH-box RNA helicase 98.5 1.3E-05 2.8E-10 93.6 21.0 112 530-644 258-393 (674)
153 COG1199 DinG Rad3-related DNA 98.4 2.2E-05 4.8E-10 97.5 24.4 102 529-634 478-612 (654)
154 PRK07246 bifunctional ATP-depe 98.4 7.4E-05 1.6E-09 94.0 26.6 79 528-611 645-725 (820)
155 PRK12901 secA preprotein trans 98.3 1.4E-05 3E-10 98.2 17.8 104 527-635 625-737 (1112)
156 TIGR00596 rad1 DNA repair prot 98.1 3E-05 6.5E-10 96.0 14.9 77 289-371 6-89 (814)
157 KOG0920 ATP-dependent RNA heli 98.1 0.00021 4.5E-09 88.2 21.5 112 528-644 411-547 (924)
158 PRK12902 secA preprotein trans 98.1 8.9E-05 1.9E-09 90.4 17.9 119 200-325 85-218 (939)
159 KOG0924 mRNA splicing factor A 97.9 0.00098 2.1E-08 77.6 21.8 115 531-648 564-704 (1042)
160 KOG0923 mRNA splicing factor A 97.9 0.00078 1.7E-08 78.4 19.2 103 530-640 473-605 (902)
161 PRK15483 type III restriction- 97.8 0.00013 2.8E-09 90.6 13.1 68 582-650 501-576 (986)
162 PF13086 AAA_11: AAA domain; P 97.8 0.00015 3.3E-09 77.3 11.3 65 200-264 1-75 (236)
163 KOG0926 DEAH-box RNA helicase 97.7 0.00086 1.9E-08 79.4 16.7 104 212-323 267-383 (1172)
164 smart00489 DEXDc3 DEAD-like he 97.7 0.00036 7.9E-09 77.3 12.5 65 201-265 9-84 (289)
165 smart00488 DEXDc2 DEAD-like he 97.7 0.00036 7.9E-09 77.3 12.5 65 201-265 9-84 (289)
166 TIGR02562 cas3_yersinia CRISPR 97.7 0.05 1.1E-06 68.3 31.6 46 582-630 838-883 (1110)
167 PF07443 HARP: HepA-related pr 97.7 3.5E-05 7.7E-10 61.2 3.0 48 106-153 8-55 (55)
168 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00041 9E-09 83.8 12.7 85 528-616 469-566 (636)
169 KOG0953 Mitochondrial RNA heli 97.5 0.00033 7.2E-09 80.0 9.3 100 527-630 355-465 (700)
170 TIGR00604 rad3 DNA repair heli 97.3 0.0012 2.6E-08 82.5 11.8 65 200-264 10-82 (705)
171 COG0653 SecA Preprotein transl 97.3 0.0096 2.1E-07 72.9 18.7 115 527-650 426-551 (822)
172 PF13604 AAA_30: AAA domain; P 97.3 0.0018 4E-08 67.5 10.9 126 200-358 1-132 (196)
173 KOG1803 DNA helicase [Replicat 97.2 0.00062 1.3E-08 79.0 7.6 64 198-261 183-248 (649)
174 PF13401 AAA_22: AAA domain; P 97.2 0.0011 2.4E-08 63.9 7.7 115 216-357 4-126 (131)
175 KOG0925 mRNA splicing factor A 97.1 0.015 3.2E-07 65.9 16.5 60 583-645 315-391 (699)
176 PF02562 PhoH: PhoH-like prote 97.1 0.00086 1.9E-08 69.8 6.2 141 202-360 6-159 (205)
177 PF12340 DUF3638: Protein of u 97.1 0.0051 1.1E-07 64.7 11.7 126 200-325 23-185 (229)
178 PF06862 DUF1253: Protein of u 97.0 0.088 1.9E-06 61.0 21.8 100 528-628 298-398 (442)
179 PRK08074 bifunctional ATP-depe 97.0 0.0051 1.1E-07 79.1 12.9 84 529-614 751-839 (928)
180 PRK14873 primosome assembly pr 96.9 0.0018 3.9E-08 79.3 8.0 125 225-357 169-304 (665)
181 KOG1802 RNA helicase nonsense 96.8 0.0032 6.9E-08 73.5 8.6 65 200-265 410-477 (935)
182 PF09848 DUF2075: Uncharacteri 96.7 0.0047 1E-07 70.7 8.7 87 219-326 4-97 (352)
183 PRK04296 thymidine kinase; Pro 96.6 0.0088 1.9E-07 62.1 9.3 108 219-355 5-114 (190)
184 PRK10536 hypothetical protein; 96.5 0.0051 1.1E-07 65.9 6.7 142 201-360 60-216 (262)
185 TIGR00376 DNA helicase, putati 96.4 0.016 3.5E-07 71.2 11.3 66 199-264 156-223 (637)
186 COG3587 Restriction endonuclea 96.1 0.017 3.8E-07 69.7 9.0 46 582-627 483-528 (985)
187 PF07517 SecA_DEAD: SecA DEAD- 96.1 0.021 4.7E-07 62.0 9.1 120 198-324 75-209 (266)
188 PF11496 HDA2-3: Class II hist 96.0 0.025 5.4E-07 62.6 9.3 122 528-650 115-254 (297)
189 PF13307 Helicase_C_2: Helicas 96.0 0.013 2.9E-07 59.4 6.3 77 529-611 8-92 (167)
190 TIGR01448 recD_rel helicase, p 95.9 0.065 1.4E-06 67.0 12.9 133 197-359 320-455 (720)
191 PRK11747 dinG ATP-dependent DN 95.7 0.06 1.3E-06 67.2 11.6 79 530-613 534-619 (697)
192 KOG4150 Predicted ATP-dependen 95.4 0.04 8.6E-07 63.4 7.6 117 528-648 523-647 (1034)
193 TIGR01447 recD exodeoxyribonuc 95.3 0.11 2.4E-06 63.2 11.6 60 203-263 148-214 (586)
194 KOG1131 RNA polymerase II tran 95.3 0.12 2.7E-06 59.2 11.1 53 200-252 16-75 (755)
195 smart00382 AAA ATPases associa 95.0 0.041 8.9E-07 52.7 5.7 45 216-260 2-47 (148)
196 PRK10875 recD exonuclease V su 94.9 0.088 1.9E-06 64.2 9.4 55 201-256 153-212 (615)
197 PRK12723 flagellar biosynthesi 94.7 0.39 8.4E-06 55.3 13.5 130 217-372 175-313 (388)
198 KOG0951 RNA helicase BRR2, DEA 94.6 0.037 7.9E-07 69.3 5.0 108 212-326 1155-1267(1674)
199 smart00492 HELICc3 helicase su 94.6 0.2 4.4E-06 49.2 9.3 68 542-611 3-79 (141)
200 TIGR02768 TraA_Ti Ti-type conj 94.5 0.27 5.8E-06 61.8 12.6 124 199-357 351-477 (744)
201 cd00009 AAA The AAA+ (ATPases 94.5 0.56 1.2E-05 45.2 12.5 43 216-258 19-62 (151)
202 PF13245 AAA_19: Part of AAA d 94.4 0.15 3.2E-06 44.4 6.9 55 208-262 2-62 (76)
203 KOG1132 Helicase of the DEAD s 94.2 0.17 3.6E-06 61.8 9.1 85 533-618 564-663 (945)
204 PRK06526 transposase; Provisio 94.0 0.3 6.5E-06 53.1 10.0 52 208-264 91-143 (254)
205 PHA02533 17 large terminase pr 93.9 0.59 1.3E-05 56.3 13.0 144 200-357 59-210 (534)
206 cd01121 Sms Sms (bacterial rad 93.8 0.71 1.5E-05 53.0 13.1 121 216-357 82-210 (372)
207 TIGR00604 rad3 DNA repair heli 93.8 0.23 5.1E-06 62.3 9.9 82 530-613 522-618 (705)
208 PRK08074 bifunctional ATP-depe 93.7 0.23 5.1E-06 64.1 9.9 62 200-261 257-325 (928)
209 COG0553 HepA Superfamily II DN 93.6 0.02 4.3E-07 73.8 0.1 176 199-377 83-288 (866)
210 KOG1805 DNA replication helica 93.6 0.16 3.4E-06 62.6 7.4 139 200-358 669-831 (1100)
211 PRK05703 flhF flagellar biosyn 93.5 0.7 1.5E-05 54.1 12.5 132 216-373 221-359 (424)
212 cd01124 KaiC KaiC is a circadi 93.4 1 2.2E-05 46.1 12.4 47 219-265 2-49 (187)
213 TIGR03420 DnaA_homol_Hda DnaA 93.3 0.55 1.2E-05 49.9 10.6 43 216-258 38-80 (226)
214 PRK11747 dinG ATP-dependent DN 93.2 0.42 9.2E-06 59.7 10.7 58 200-257 25-93 (697)
215 PF09889 DUF2116: Uncharacteri 93.0 0.064 1.4E-06 43.7 2.1 31 905-944 5-35 (59)
216 PRK09112 DNA polymerase III su 93.0 0.94 2E-05 51.7 12.2 123 218-356 47-181 (351)
217 PRK13889 conjugal transfer rel 92.9 0.58 1.3E-05 60.0 11.5 126 200-360 346-474 (988)
218 COG3421 Uncharacterized protei 92.8 0.23 5.1E-06 58.0 7.0 101 222-325 3-125 (812)
219 CHL00181 cbbX CbbX; Provisiona 92.5 0.67 1.5E-05 51.4 10.1 25 218-242 61-85 (287)
220 TIGR02880 cbbX_cfxQ probable R 92.4 0.6 1.3E-05 51.7 9.6 25 218-242 60-84 (284)
221 PRK11889 flhF flagellar biosyn 92.4 2 4.3E-05 49.3 13.6 125 217-369 242-375 (436)
222 PRK14974 cell division protein 92.2 1.1 2.4E-05 50.6 11.4 116 218-357 142-265 (336)
223 PRK14956 DNA polymerase III su 91.9 0.94 2E-05 53.3 10.6 36 207-242 28-66 (484)
224 PRK08084 DNA replication initi 91.9 1 2.2E-05 48.4 10.3 29 217-245 46-74 (235)
225 smart00491 HELICc2 helicase su 91.8 0.74 1.6E-05 45.3 8.3 68 542-611 3-80 (142)
226 COG1435 Tdk Thymidine kinase [ 91.8 1.1 2.4E-05 45.9 9.6 109 220-355 8-118 (201)
227 TIGR02881 spore_V_K stage V sp 91.6 1.2 2.5E-05 48.8 10.6 25 217-241 43-67 (261)
228 TIGR01073 pcrA ATP-dependent D 91.6 32 0.0007 43.5 24.7 64 199-265 3-72 (726)
229 PF05876 Terminase_GpA: Phage 91.5 0.58 1.3E-05 56.8 8.7 168 193-366 9-189 (557)
230 PRK14960 DNA polymerase III su 91.4 1.4 2.9E-05 53.8 11.4 36 206-241 24-62 (702)
231 PRK05707 DNA polymerase III su 91.1 2.2 4.8E-05 48.2 12.3 43 200-242 3-48 (328)
232 cd01120 RecA-like_NTPases RecA 91.0 2.1 4.6E-05 42.2 11.0 34 219-252 2-36 (165)
233 COG1875 NYN ribonuclease and A 90.7 0.48 1.1E-05 52.7 6.3 38 203-240 231-269 (436)
234 COG0464 SpoVK ATPases of the A 90.6 1.7 3.7E-05 52.2 11.6 94 200-330 249-353 (494)
235 PRK13826 Dtr system oriT relax 90.5 1.5 3.3E-05 56.7 11.4 126 200-360 381-509 (1102)
236 PRK07952 DNA replication prote 90.5 2.8 6E-05 45.3 11.8 45 217-264 100-144 (244)
237 PHA03368 DNA packaging termina 90.4 0.61 1.3E-05 56.2 7.2 123 218-355 256-389 (738)
238 PRK12323 DNA polymerase III su 90.4 1.6 3.5E-05 53.0 10.8 39 204-242 23-64 (700)
239 PRK11823 DNA repair protein Ra 90.2 2.4 5.1E-05 50.2 12.0 118 218-356 82-207 (446)
240 PF00448 SRP54: SRP54-type pro 90.2 0.72 1.6E-05 48.1 6.9 133 219-371 4-140 (196)
241 COG3267 ExeA Type II secretory 90.1 1.4 3E-05 47.1 8.7 43 211-253 45-88 (269)
242 PRK08181 transposase; Validate 90.0 4.2 9.2E-05 44.6 12.9 48 203-251 90-141 (269)
243 PRK12402 replication factor C 89.7 3.1 6.8E-05 47.0 12.3 41 203-243 21-63 (337)
244 PLN03025 replication factor C 89.5 5.2 0.00011 45.1 13.7 25 218-242 36-60 (319)
245 PRK07003 DNA polymerase III su 89.5 2.3 5E-05 52.5 11.2 24 218-241 40-63 (830)
246 PRK08727 hypothetical protein; 89.3 2.3 4.9E-05 45.7 10.1 34 218-251 43-76 (233)
247 PRK06921 hypothetical protein; 89.2 2.7 5.9E-05 46.1 10.7 36 216-251 117-153 (266)
248 TIGR03015 pepcterm_ATPase puta 89.1 2.8 6.1E-05 45.7 10.9 30 212-241 38-68 (269)
249 PF05621 TniB: Bacterial TniB 88.8 4.3 9.2E-05 44.8 11.7 119 217-356 62-189 (302)
250 PRK03992 proteasome-activating 88.7 3.2 6.8E-05 48.3 11.4 39 215-255 164-202 (389)
251 PF06733 DEAD_2: DEAD_2; Inte 88.7 0.38 8.2E-06 49.1 3.4 37 290-326 119-159 (174)
252 PRK14722 flhF flagellar biosyn 88.7 3.7 8E-05 47.1 11.6 128 213-366 134-267 (374)
253 PRK06893 DNA replication initi 88.6 2.5 5.5E-05 45.2 9.8 34 218-251 41-74 (229)
254 PF00265 TK: Thymidine kinase; 88.4 0.52 1.1E-05 48.2 4.2 33 220-252 5-38 (176)
255 COG1066 Sms Predicted ATP-depe 88.2 6.6 0.00014 44.9 12.8 120 216-356 93-219 (456)
256 PTZ00293 thymidine kinase; Pro 87.8 4.4 9.6E-05 42.5 10.6 33 220-252 8-41 (211)
257 COG1419 FlhF Flagellar GTP-bin 87.7 2.8 6.1E-05 47.9 9.7 133 216-374 203-341 (407)
258 PRK06835 DNA replication prote 87.7 5.8 0.00013 44.8 12.3 52 201-252 161-219 (329)
259 TIGR00416 sms DNA repair prote 87.6 5.2 0.00011 47.4 12.4 119 216-355 94-220 (454)
260 PF00004 AAA: ATPase family as 87.6 1.1 2.4E-05 42.7 5.8 35 219-255 1-35 (132)
261 PRK05642 DNA replication initi 87.6 3.2 7E-05 44.5 9.9 27 218-244 47-73 (234)
262 TIGR00631 uvrb excinuclease AB 87.6 1.7 3.7E-05 53.7 8.7 64 203-268 12-80 (655)
263 PRK14891 50S ribosomal protein 87.5 0.29 6.3E-06 45.9 1.5 53 904-956 5-61 (131)
264 TIGR03877 thermo_KaiC_1 KaiC d 87.2 5.3 0.00012 42.9 11.3 49 216-264 21-70 (237)
265 PRK09183 transposase/IS protei 87.0 5.7 0.00012 43.4 11.5 50 205-255 92-142 (259)
266 PRK10865 protein disaggregatio 86.8 2.8 6E-05 53.8 10.2 26 216-241 199-224 (857)
267 PHA02544 44 clamp loader, smal 86.7 9.4 0.0002 42.8 13.5 37 204-240 28-67 (316)
268 PF06745 KaiC: KaiC; InterPro 86.7 4.1 8.8E-05 43.3 10.1 132 216-355 19-159 (226)
269 KOG0740 AAA+-type ATPase [Post 86.6 1.5 3.2E-05 50.6 6.9 46 218-265 188-233 (428)
270 PRK07994 DNA polymerase III su 86.4 5.4 0.00012 49.1 11.9 39 204-242 23-64 (647)
271 PHA03333 putative ATPase subun 86.3 4.8 0.0001 49.1 11.0 130 213-357 185-332 (752)
272 PRK06731 flhF flagellar biosyn 86.3 12 0.00027 40.9 13.6 125 216-369 75-209 (270)
273 PRK00807 50S ribosomal protein 86.3 0.32 6.8E-06 38.9 0.9 43 905-947 3-48 (52)
274 PTZ00454 26S protease regulato 86.3 5.2 0.00011 46.5 11.3 43 214-258 177-219 (398)
275 TIGR03346 chaperone_ClpB ATP-d 86.3 4.3 9.3E-05 52.2 11.6 26 216-241 194-219 (852)
276 PRK14087 dnaA chromosomal repl 86.3 4.3 9.3E-05 48.1 10.8 45 218-262 143-190 (450)
277 PF13173 AAA_14: AAA domain 86.2 5.4 0.00012 38.3 9.7 38 312-357 61-99 (128)
278 PRK12724 flagellar biosynthesi 86.2 7.6 0.00016 45.1 12.2 126 219-371 226-359 (432)
279 PRK05986 cob(I)alamin adenolsy 86.1 2.8 6.1E-05 43.2 7.9 141 215-371 21-169 (191)
280 PRK00771 signal recognition pa 85.9 4.5 9.6E-05 47.5 10.5 36 217-252 96-132 (437)
281 KOG0991 Replication factor C, 85.8 1.5 3.2E-05 46.0 5.6 77 218-325 50-126 (333)
282 PRK06067 flagellar accessory p 85.8 9.7 0.00021 40.7 12.4 50 216-265 25-75 (234)
283 PRK11034 clpA ATP-dependent Cl 85.7 5.1 0.00011 50.4 11.5 26 216-241 207-232 (758)
284 PRK08769 DNA polymerase III su 85.4 11 0.00024 42.4 12.9 138 198-355 2-151 (319)
285 PRK09111 DNA polymerase III su 85.3 5 0.00011 49.1 10.9 37 206-242 33-72 (598)
286 PRK14958 DNA polymerase III su 85.1 5.2 0.00011 48.1 10.8 24 218-241 40-63 (509)
287 CHL00195 ycf46 Ycf46; Provisio 85.1 3.2 7E-05 49.5 9.0 40 211-252 254-293 (489)
288 KOG0739 AAA+-type ATPase [Post 85.0 7.1 0.00015 42.5 10.4 103 218-357 168-278 (439)
289 PRK14949 DNA polymerase III su 84.8 5.2 0.00011 50.5 10.8 24 219-242 41-64 (944)
290 PRK08116 hypothetical protein; 84.7 6 0.00013 43.4 10.3 43 216-258 114-157 (268)
291 cd01125 repA Hexameric Replica 84.7 15 0.00033 39.4 13.3 103 219-324 4-123 (239)
292 KOG0738 AAA+-type ATPase [Post 84.6 6.7 0.00015 44.3 10.4 44 218-264 247-291 (491)
293 KOG0737 AAA+-type ATPase [Post 84.5 6.4 0.00014 44.3 10.2 64 200-265 108-174 (386)
294 KOG0989 Replication factor C, 84.4 3.4 7.3E-05 45.3 7.8 39 204-242 40-83 (346)
295 PRK14712 conjugal transfer nic 84.4 4.3 9.4E-05 54.5 10.4 127 196-359 831-970 (1623)
296 PRK08903 DnaA regulatory inact 84.3 5.2 0.00011 42.5 9.5 35 216-250 42-77 (227)
297 TIGR02760 TraI_TIGR conjugativ 84.3 6.3 0.00014 54.9 12.3 132 200-360 429-570 (1960)
298 PRK07471 DNA polymerase III su 84.3 18 0.00038 41.6 14.2 121 218-356 43-181 (365)
299 PLN00020 ribulose bisphosphate 84.2 3.1 6.7E-05 47.2 7.7 47 216-264 148-194 (413)
300 TIGR02639 ClpA ATP-dependent C 84.1 6.2 0.00013 49.9 11.4 27 216-242 203-229 (731)
301 COG1222 RPT1 ATP-dependent 26S 84.0 8.6 0.00019 43.2 10.8 94 214-344 183-280 (406)
302 PRK04195 replication factor C 83.8 8.6 0.00019 46.1 11.9 24 217-240 40-63 (482)
303 TIGR03881 KaiC_arch_4 KaiC dom 83.7 13 0.00027 39.6 12.2 49 216-264 20-69 (229)
304 KOG0952 DNA/RNA helicase MER3/ 83.7 1.1 2.3E-05 56.1 4.2 107 215-326 942-1060(1230)
305 TIGR01243 CDC48 AAA family ATP 83.7 5.5 0.00012 50.4 10.7 73 216-325 487-559 (733)
306 PRK12422 chromosomal replicati 83.6 10 0.00022 44.9 12.2 33 218-250 143-176 (445)
307 TIGR03689 pup_AAA proteasome A 83.6 2.5 5.5E-05 50.4 7.1 27 215-241 215-241 (512)
308 PRK04328 hypothetical protein; 83.5 6.1 0.00013 42.8 9.6 49 216-264 23-72 (249)
309 PRK07764 DNA polymerase III su 83.4 7 0.00015 49.7 11.4 37 205-241 23-62 (824)
310 PF00580 UvrD-helicase: UvrD/R 83.2 3 6.6E-05 46.3 7.5 115 201-322 1-125 (315)
311 PTZ00112 origin recognition co 83.2 15 0.00032 46.3 13.4 40 202-241 760-806 (1164)
312 PRK08533 flagellar accessory p 83.1 8.4 0.00018 41.2 10.4 50 214-263 22-72 (230)
313 TIGR00362 DnaA chromosomal rep 83.0 7.1 0.00015 45.6 10.6 33 218-250 138-173 (405)
314 PRK12727 flagellar biosynthesi 82.8 17 0.00037 43.5 13.4 121 215-365 349-478 (559)
315 TIGR03345 VI_ClpV1 type VI sec 82.7 4.7 0.0001 51.6 9.6 25 217-241 209-233 (852)
316 CHL00095 clpC Clp protease ATP 82.7 6.5 0.00014 50.4 10.9 26 216-241 200-225 (821)
317 PTZ00361 26 proteosome regulat 82.5 8.8 0.00019 45.1 11.0 38 216-255 217-254 (438)
318 PRK00149 dnaA chromosomal repl 82.3 6.7 0.00015 46.5 10.2 44 218-261 150-196 (450)
319 PF05496 RuvB_N: Holliday junc 82.1 4.3 9.3E-05 42.9 7.3 23 218-240 52-74 (233)
320 CHL00176 ftsH cell division pr 82.1 9 0.0002 47.3 11.3 33 216-250 216-248 (638)
321 cd01122 GP4d_helicase GP4d_hel 81.9 8.6 0.00019 42.1 10.3 50 213-262 27-78 (271)
322 PHA03372 DNA packaging termina 81.8 3.6 7.8E-05 49.3 7.4 119 220-355 206-336 (668)
323 PRK14957 DNA polymerase III su 81.8 13 0.00029 44.9 12.4 38 204-241 23-63 (546)
324 PRK08691 DNA polymerase III su 81.8 20 0.00044 44.3 13.9 24 218-241 40-63 (709)
325 PRK14959 DNA polymerase III su 81.8 13 0.00029 45.4 12.4 36 206-241 25-63 (624)
326 TIGR02655 circ_KaiC circadian 81.7 7.1 0.00015 46.8 10.2 109 203-326 246-367 (484)
327 PRK05298 excinuclease ABC subu 81.6 4.8 0.0001 50.0 8.9 67 200-268 12-83 (652)
328 PRK06645 DNA polymerase III su 81.2 8.9 0.00019 46.0 10.6 34 208-241 32-68 (507)
329 PRK14964 DNA polymerase III su 80.8 17 0.00038 43.3 12.7 24 218-241 37-60 (491)
330 COG1484 DnaC DNA replication p 80.6 4.7 0.0001 43.9 7.4 59 204-263 94-153 (254)
331 TIGR01242 26Sp45 26S proteasom 80.4 9.6 0.00021 43.8 10.4 38 215-254 155-192 (364)
332 PRK14962 DNA polymerase III su 80.3 15 0.00034 43.6 12.2 36 206-241 23-61 (472)
333 PRK10917 ATP-dependent DNA hel 80.3 8.3 0.00018 48.3 10.4 79 529-608 309-391 (681)
334 PRK14951 DNA polymerase III su 79.9 11 0.00023 46.3 10.9 24 219-242 41-64 (618)
335 PRK14969 DNA polymerase III su 79.6 11 0.00025 45.5 10.9 36 206-241 25-63 (527)
336 COG2256 MGS1 ATPase related to 79.6 10 0.00022 43.2 9.6 29 211-239 41-71 (436)
337 PRK07940 DNA polymerase III su 79.6 16 0.00034 42.5 11.7 25 218-242 38-62 (394)
338 TIGR02688 conserved hypothetic 79.5 4.1 8.8E-05 47.1 6.6 44 213-258 206-250 (449)
339 PRK14961 DNA polymerase III su 79.2 17 0.00037 41.8 11.8 23 219-241 41-63 (363)
340 TIGR00708 cobA cob(I)alamin ad 79.1 2.5 5.3E-05 43.0 4.3 141 217-371 6-151 (173)
341 PRK14088 dnaA chromosomal repl 79.0 16 0.00034 43.2 11.7 34 218-251 132-168 (440)
342 TIGR01075 uvrD DNA helicase II 78.8 10 0.00022 47.9 10.6 101 200-323 4-114 (715)
343 PRK13709 conjugal transfer nic 78.6 8.8 0.00019 52.4 10.3 60 196-255 963-1028(1747)
344 PRK06871 DNA polymerase III su 78.5 19 0.00041 40.7 11.5 121 201-345 3-133 (325)
345 TIGR03880 KaiC_arch_3 KaiC dom 78.4 13 0.00029 39.3 10.0 49 217-265 17-66 (224)
346 PRK10416 signal recognition pa 78.2 30 0.00066 38.9 13.1 33 219-251 117-150 (318)
347 KOG0730 AAA+-type ATPase [Post 78.1 10 0.00022 45.8 9.4 122 214-378 466-595 (693)
348 PRK14963 DNA polymerase III su 78.0 24 0.00051 42.5 12.8 26 219-244 39-64 (504)
349 PF13481 AAA_25: AAA domain; P 77.9 5.3 0.00011 41.1 6.6 105 215-327 31-156 (193)
350 PRK13342 recombination factor 77.7 8.4 0.00018 45.1 8.9 23 218-240 38-60 (413)
351 TIGR03117 cas_csf4 CRISPR-asso 77.5 10 0.00023 46.5 9.8 62 205-266 2-70 (636)
352 PHA00350 putative assembly pro 77.3 12 0.00026 43.3 9.6 28 220-247 5-33 (399)
353 cd00561 CobA_CobO_BtuR ATP:cor 77.2 6.1 0.00013 39.7 6.4 131 219-359 5-140 (159)
354 PRK14955 DNA polymerase III su 77.2 23 0.0005 41.2 12.3 25 218-242 40-64 (397)
355 KOG0733 Nuclear AAA ATPase (VC 77.0 25 0.00055 42.2 12.0 48 214-264 543-591 (802)
356 TIGR03499 FlhF flagellar biosy 76.9 8.1 0.00018 42.7 8.0 37 216-252 194-233 (282)
357 PRK12726 flagellar biosynthesi 76.9 35 0.00077 39.2 13.0 124 216-368 206-336 (407)
358 PF12137 RapA_C: RNA polymeras 76.5 0.58 1.3E-05 53.0 -1.1 109 630-744 1-109 (362)
359 PRK05973 replicative DNA helic 76.3 26 0.00055 37.7 11.3 52 213-264 61-113 (237)
360 PRK14086 dnaA chromosomal repl 76.2 14 0.0003 45.0 10.2 43 219-261 317-362 (617)
361 PRK14948 DNA polymerase III su 76.2 18 0.00039 44.6 11.4 25 218-242 40-64 (620)
362 TIGR01547 phage_term_2 phage t 76.1 13 0.00028 43.3 9.8 124 220-358 5-142 (396)
363 PRK14952 DNA polymerase III su 76.1 21 0.00045 43.7 11.8 23 219-241 38-60 (584)
364 PF01695 IstB_IS21: IstB-like 76.0 3.4 7.4E-05 42.3 4.4 37 214-250 45-82 (178)
365 PRK06964 DNA polymerase III su 75.9 26 0.00056 39.9 11.7 42 201-242 2-47 (342)
366 PRK13833 conjugal transfer pro 75.9 5.7 0.00012 44.7 6.4 41 200-240 128-168 (323)
367 COG2075 RPL24A Ribosomal prote 75.7 1.4 3.1E-05 36.4 1.2 43 905-947 5-50 (66)
368 TIGR00064 ftsY signal recognit 75.6 42 0.00091 36.9 13.1 92 219-325 75-167 (272)
369 PRK07133 DNA polymerase III su 75.6 27 0.00058 43.6 12.5 36 206-241 27-65 (725)
370 TIGR01074 rep ATP-dependent DN 75.5 16 0.00036 45.6 11.2 101 201-323 2-112 (664)
371 PF05127 Helicase_RecD: Helica 75.5 2.2 4.9E-05 43.5 2.8 32 220-252 2-35 (177)
372 PRK11773 uvrD DNA-dependent he 75.2 15 0.00032 46.5 10.7 102 199-323 8-119 (721)
373 TIGR02928 orc1/cdc6 family rep 75.0 16 0.00034 41.9 10.1 40 202-241 20-65 (365)
374 TIGR00959 ffh signal recogniti 75.0 21 0.00046 41.9 11.0 35 218-252 101-137 (428)
375 PF03237 Terminase_6: Terminas 75.0 35 0.00075 38.7 13.0 101 221-325 2-110 (384)
376 cd03115 SRP The signal recogni 74.9 18 0.00039 36.5 9.5 32 219-250 3-35 (173)
377 PRK00411 cdc6 cell division co 74.8 24 0.00052 40.9 11.7 28 217-244 56-83 (394)
378 CHL00206 ycf2 Ycf2; Provisiona 74.7 11 0.00023 51.3 9.1 43 214-258 1628-1670(2281)
379 PRK13341 recombination factor 74.5 11 0.00023 47.4 8.9 23 217-239 53-75 (725)
380 PF02702 KdpD: Osmosensitive K 74.3 15 0.00032 38.2 8.3 108 218-345 7-115 (211)
381 PRK14950 DNA polymerase III su 74.0 27 0.00059 42.9 12.2 23 219-241 41-63 (585)
382 PRK06090 DNA polymerase III su 73.4 44 0.00096 37.6 12.7 122 200-345 3-134 (319)
383 TIGR00635 ruvB Holliday juncti 73.3 12 0.00026 41.7 8.3 23 218-240 32-54 (305)
384 PF11240 DUF3042: Protein of u 73.1 3.1 6.6E-05 33.3 2.4 19 4-22 34-52 (54)
385 PF03354 Terminase_1: Phage Te 73.1 31 0.00067 41.3 12.2 130 203-343 1-148 (477)
386 PRK09376 rho transcription ter 73.0 4.1 8.8E-05 46.8 4.4 29 214-242 167-195 (416)
387 TIGR00643 recG ATP-dependent D 72.6 17 0.00037 45.2 10.1 79 529-608 283-365 (630)
388 COG0470 HolB ATPase involved i 72.3 16 0.00034 40.9 9.1 27 219-245 27-53 (325)
389 PRK07993 DNA polymerase III su 72.2 24 0.00052 40.1 10.4 123 200-345 2-134 (334)
390 cd01129 PulE-GspE PulE/GspE Th 72.2 8.3 0.00018 42.2 6.5 49 201-249 64-113 (264)
391 PRK05896 DNA polymerase III su 72.2 32 0.0007 42.0 11.9 37 206-242 25-64 (605)
392 KOG1133 Helicase of the DEAD s 71.9 30 0.00065 42.1 11.1 78 531-612 630-721 (821)
393 cd00984 DnaB_C DnaB helicase C 71.9 36 0.00077 36.4 11.4 39 214-252 11-51 (242)
394 cd01130 VirB11-like_ATPase Typ 71.7 7.9 0.00017 39.8 6.0 49 200-248 9-57 (186)
395 TIGR01425 SRP54_euk signal rec 71.1 69 0.0015 37.6 13.9 35 218-252 102-137 (429)
396 TIGR03346 chaperone_ClpB ATP-d 70.9 40 0.00086 43.5 13.2 34 218-251 597-630 (852)
397 KOG1807 Helicases [Replication 70.8 10 0.00023 46.2 7.1 65 199-264 377-449 (1025)
398 PF00437 T2SE: Type II/IV secr 70.7 6.1 0.00013 43.3 5.1 48 203-250 114-162 (270)
399 KOG0734 AAA+-type ATPase conta 70.5 30 0.00065 40.9 10.5 121 216-378 337-464 (752)
400 cd00472 Ribosomal_L24e_L24 Rib 70.5 1.9 4.2E-05 34.6 0.8 43 905-947 5-50 (54)
401 PF06467 zf-FCS: MYM-type Zinc 70.4 2.3 5E-05 32.3 1.2 34 904-937 7-43 (43)
402 PRK08451 DNA polymerase III su 69.8 41 0.00088 40.7 12.0 35 207-241 24-61 (535)
403 PRK13849 putative crown gall t 69.6 48 0.001 35.5 11.5 36 225-260 11-49 (231)
404 PRK11054 helD DNA helicase IV; 69.3 9.6 0.00021 47.6 6.9 80 199-303 195-280 (684)
405 COG0552 FtsY Signal recognitio 69.2 50 0.0011 37.1 11.5 93 219-326 142-235 (340)
406 PRK10867 signal recognition pa 69.1 37 0.00079 40.0 11.2 42 218-259 102-149 (433)
407 TIGR00678 holB DNA polymerase 68.7 43 0.00094 34.3 10.7 25 218-242 16-40 (188)
408 PF00308 Bac_DnaA: Bacterial d 68.6 51 0.0011 34.9 11.4 24 219-242 37-60 (219)
409 PRK08058 DNA polymerase III su 68.5 51 0.0011 37.3 12.1 25 218-242 30-54 (329)
410 COG3972 Superfamily I DNA and 68.4 43 0.00093 39.3 11.0 42 225-266 185-230 (660)
411 PRK10919 ATP-dependent DNA hel 67.7 16 0.00035 45.7 8.5 102 200-323 2-113 (672)
412 PHA00729 NTP-binding motif con 67.7 74 0.0016 33.9 12.1 23 218-240 19-41 (226)
413 PRK00440 rfc replication facto 67.7 82 0.0018 35.1 13.6 24 218-241 40-63 (319)
414 PF01443 Viral_helicase1: Vira 67.6 8 0.00017 41.0 5.1 41 311-360 61-101 (234)
415 PHA00012 I assembly protein 67.5 11 0.00025 41.9 6.1 34 220-254 5-38 (361)
416 TIGR02782 TrbB_P P-type conjug 67.5 12 0.00025 41.9 6.5 41 202-242 118-158 (299)
417 PF06068 TIP49: TIP49 C-termin 67.5 5.8 0.00013 44.9 4.0 37 216-252 50-86 (398)
418 COG0467 RAD55 RecA-superfamily 67.2 23 0.0005 38.5 8.7 50 214-263 21-71 (260)
419 COG2255 RuvB Holliday junction 67.1 8.4 0.00018 41.9 4.9 23 218-240 54-76 (332)
420 PRK06647 DNA polymerase III su 66.7 39 0.00084 41.3 11.2 38 204-241 23-63 (563)
421 PRK14954 DNA polymerase III su 66.3 51 0.0011 40.7 12.1 24 218-241 40-63 (620)
422 TIGR01243 CDC48 AAA family ATP 66.1 19 0.00042 45.6 8.9 36 214-251 210-245 (733)
423 PRK13894 conjugal transfer ATP 65.3 12 0.00026 42.2 6.1 40 201-240 133-172 (319)
424 TIGR02640 gas_vesic_GvpN gas v 65.2 12 0.00026 41.0 5.9 34 215-250 20-53 (262)
425 PRK09302 circadian clock prote 64.9 29 0.00063 41.9 9.8 48 218-265 275-323 (509)
426 PF13177 DNA_pol3_delta2: DNA 64.7 43 0.00093 33.6 9.4 114 218-355 21-140 (162)
427 PRK00080 ruvB Holliday junctio 64.5 42 0.0009 38.0 10.4 24 217-240 52-75 (328)
428 PF07015 VirC1: VirC1 protein; 64.5 27 0.00059 37.1 8.1 38 225-262 11-51 (231)
429 TIGR01241 FtsH_fam ATP-depende 64.1 14 0.00029 44.6 6.7 24 216-239 88-111 (495)
430 TIGR03878 thermo_KaiC_2 KaiC d 63.9 46 0.001 36.2 10.2 36 216-251 36-72 (259)
431 PF12855 Ecl1: Life-span regul 63.5 3.7 7.9E-05 31.4 1.0 35 903-943 6-40 (43)
432 PRK14965 DNA polymerase III su 63.3 48 0.001 40.7 11.2 37 205-241 24-63 (576)
433 COG4068 Uncharacterized protei 63.2 3 6.4E-05 33.5 0.5 23 905-936 10-32 (64)
434 PRK06904 replicative DNA helic 63.1 52 0.0011 39.3 11.1 113 213-327 218-349 (472)
435 COG3598 RepA RecA-family ATPas 63.0 46 0.00099 37.1 9.5 106 214-325 87-207 (402)
436 PF01246 Ribosomal_L24e: Ribos 62.9 3.5 7.6E-05 35.2 1.0 44 904-947 4-50 (71)
437 COG2842 Uncharacterized ATPase 62.8 47 0.001 36.5 9.7 110 212-357 90-203 (297)
438 TIGR00767 rho transcription te 62.7 15 0.00033 42.3 6.3 30 214-243 166-195 (415)
439 TIGR02760 TraI_TIGR conjugativ 62.4 32 0.00069 48.3 10.4 128 199-358 1018-1151(1960)
440 PRK08699 DNA polymerase III su 62.2 74 0.0016 36.0 11.7 41 201-241 2-46 (325)
441 KOG0921 Dosage compensation co 62.1 1.6E+02 0.0035 37.3 14.7 104 214-324 391-505 (1282)
442 PRK13900 type IV secretion sys 62.1 14 0.0003 41.9 5.9 42 207-248 151-192 (332)
443 PRK09302 circadian clock prote 61.9 79 0.0017 38.2 12.7 106 216-325 31-143 (509)
444 PF13479 AAA_24: AAA domain 61.8 18 0.00039 38.1 6.4 75 216-324 3-80 (213)
445 KOG0729 26S proteasome regulat 61.8 81 0.0018 34.0 10.8 51 209-261 204-254 (435)
446 PRK14721 flhF flagellar biosyn 61.8 60 0.0013 38.0 11.0 131 215-371 190-326 (420)
447 cd02037 MRP-like MRP (Multiple 61.5 74 0.0016 31.9 10.6 110 220-372 4-117 (169)
448 PRK08760 replicative DNA helic 61.4 54 0.0012 39.2 10.9 109 216-327 229-354 (476)
449 KOG0780 Signal recognition par 61.3 37 0.00081 38.6 8.7 92 219-325 104-196 (483)
450 TIGR00595 priA primosomal prot 61.2 28 0.00062 41.9 8.6 78 528-608 23-101 (505)
451 COG0593 DnaA ATPase involved i 60.2 73 0.0016 37.0 11.2 36 218-253 115-150 (408)
452 PRK05563 DNA polymerase III su 60.0 47 0.001 40.6 10.3 24 218-241 40-63 (559)
453 COG1200 RecG RecG-like helicas 60.0 29 0.00062 42.4 8.1 77 528-606 309-390 (677)
454 PRK12377 putative replication 59.9 24 0.00052 38.2 7.0 43 216-258 101-144 (248)
455 PRK12608 transcription termina 59.9 28 0.00061 39.9 7.7 39 206-244 121-161 (380)
456 PRK14723 flhF flagellar biosyn 59.4 34 0.00073 43.0 8.9 112 216-357 185-306 (767)
457 PRK05580 primosome assembly pr 59.4 33 0.00072 42.9 9.1 78 529-609 189-267 (679)
458 KOG0298 DEAD box-containing he 59.1 4.2 9.1E-05 52.1 1.1 183 245-452 422-632 (1394)
459 PRK04132 replication factor C 59.1 43 0.00094 42.6 9.9 40 312-358 630-671 (846)
460 CHL00095 clpC Clp protease ATP 58.8 27 0.00058 44.9 8.3 96 218-344 541-636 (821)
461 PRK08939 primosomal protein Dn 58.4 26 0.00056 39.3 7.1 40 216-255 156-196 (306)
462 TIGR02237 recomb_radB DNA repa 58.3 1.2E+02 0.0026 31.5 11.9 36 218-253 14-50 (209)
463 TIGR02533 type_II_gspE general 57.8 16 0.00035 43.7 5.7 46 200-245 225-271 (486)
464 TIGR03345 VI_ClpV1 type VI sec 57.7 55 0.0012 42.2 10.7 33 219-251 599-631 (852)
465 PF13607 Succ_CoA_lig: Succiny 57.6 81 0.0018 30.9 9.6 86 532-638 3-90 (138)
466 cd01128 rho_factor Transcripti 57.5 19 0.00041 39.0 5.7 27 214-240 14-40 (249)
467 PRK10865 protein disaggregatio 57.5 54 0.0012 42.3 10.7 31 218-248 600-630 (857)
468 PRK13531 regulatory ATPase Rav 57.4 18 0.0004 42.8 5.9 44 202-245 25-68 (498)
469 TIGR02655 circ_KaiC circadian 56.7 50 0.0011 39.6 9.7 50 216-265 21-72 (484)
470 PRK06620 hypothetical protein; 56.6 74 0.0016 33.6 9.9 21 218-238 46-66 (214)
471 PRK06305 DNA polymerase III su 56.6 88 0.0019 37.1 11.6 25 218-242 41-65 (451)
472 COG1224 TIP49 DNA helicase TIP 56.2 14 0.00031 41.4 4.5 60 193-252 37-101 (450)
473 COG1474 CDC6 Cdc6-related prot 55.9 59 0.0013 37.4 9.6 104 202-326 22-137 (366)
474 COG1223 Predicted ATPase (AAA+ 55.3 37 0.0008 36.6 7.1 42 216-259 151-192 (368)
475 TIGR03600 phage_DnaB phage rep 54.9 66 0.0014 37.7 10.2 46 215-260 193-240 (421)
476 PRK05564 DNA polymerase III su 54.5 1.6E+02 0.0034 33.0 12.8 39 203-241 10-51 (313)
477 PRK11034 clpA ATP-dependent Cl 53.7 50 0.0011 41.8 9.2 30 218-249 490-519 (758)
478 COG0541 Ffh Signal recognition 53.6 92 0.002 36.3 10.4 91 219-325 103-195 (451)
479 KOG0728 26S proteasome regulat 53.6 87 0.0019 33.5 9.4 93 213-343 178-275 (404)
480 PF12846 AAA_10: AAA-like doma 53.2 17 0.00036 40.0 4.6 37 217-253 2-39 (304)
481 TIGR02788 VirB11 P-type DNA tr 53.1 18 0.0004 40.5 4.9 44 205-248 133-176 (308)
482 KOG0732 AAA+-type ATPase conta 52.9 23 0.0005 45.5 6.1 126 213-378 296-431 (1080)
483 cd02034 CooC The accessory pro 52.8 1.1E+02 0.0023 28.9 9.3 95 219-324 2-98 (116)
484 PF02606 LpxK: Tetraacyldisacc 52.2 41 0.0009 38.0 7.5 77 226-323 47-139 (326)
485 PF14532 Sigma54_activ_2: Sigm 52.0 38 0.00082 32.8 6.4 26 213-238 18-43 (138)
486 COG2109 BtuR ATP:corrinoid ade 51.8 94 0.002 32.1 9.0 62 305-370 115-178 (198)
487 COG4646 DNA methylase [Transcr 51.6 14 0.00031 42.4 3.6 30 347-376 474-503 (637)
488 PRK07399 DNA polymerase III su 51.4 1.4E+02 0.0029 33.7 11.4 28 217-244 27-54 (314)
489 PRK14971 DNA polymerase III su 51.3 1.2E+02 0.0026 37.6 11.8 36 206-241 26-64 (614)
490 PF01745 IPT: Isopentenyl tran 51.2 20 0.00043 37.7 4.3 29 219-249 4-32 (233)
491 PF02572 CobA_CobO_BtuR: ATP:c 51.1 24 0.00052 35.9 4.8 141 217-370 4-149 (172)
492 PTZ00033 60S ribosomal protein 51.0 9.5 0.00021 36.0 1.8 53 905-957 5-65 (125)
493 TIGR02639 ClpA ATP-dependent C 50.8 67 0.0014 40.7 9.9 23 218-240 486-508 (731)
494 PRK13851 type IV secretion sys 50.7 24 0.00052 40.2 5.3 125 211-369 157-281 (344)
495 PRK06995 flhF flagellar biosyn 50.6 1.1E+02 0.0025 36.4 11.1 35 216-250 256-293 (484)
496 KOG1942 DNA helicase, TBP-inte 50.1 21 0.00045 38.9 4.3 31 216-246 64-94 (456)
497 COG2804 PulE Type II secretory 50.1 34 0.00074 40.5 6.4 44 201-244 242-286 (500)
498 COG3973 Superfamily I DNA and 50.0 29 0.00063 41.7 5.8 65 200-269 212-283 (747)
499 PF12156 ATPase-cat_bd: Putati 49.7 10 0.00022 34.1 1.7 38 905-942 2-41 (88)
500 PRK14953 DNA polymerase III su 49.5 1.2E+02 0.0027 36.3 11.3 23 219-241 41-63 (486)
No 1
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-89 Score=741.70 Aligned_cols=510 Identities=35% Similarity=0.516 Sum_probs=433.5
Q ss_pred CceeecCCCCeeeEEecCChHHHHHHHhc--cCCceeeccCcccHHHHHhccccccCCCCCCCCCCCCChhhHhhhhcCC
Q 001912 116 SHYTQNNSGGKACVYKLRDYNPVLTCLKN--SAGIEVEGIPWVTLNVVEKLSHSIDTGRWNPCRPEHLSDEVVDEMIGKL 193 (997)
Q Consensus 116 ~~~~q~~~~~~~~~f~l~dy~~l~~~Lk~--l~~v~~e~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (997)
..+..|+.+++.|.+..+||-.+...+++ ...+.++++|... |... +..++.....+..-+
T Consensus 129 ~d~r~yDvkk~sw~~~~sd~v~v~~i~k~~~avkv~ld~lp~~~---------------l~~a--~~~~ea~~~~l~ev~ 191 (689)
T KOG1000|consen 129 VDSRNYDVKKRSWTVASSDHVTVSNILKNATAVKVELDPLPQNI---------------LGLA--NFKPEAAPSDLNEVM 191 (689)
T ss_pred cchhccccccceeEEecccceeeecchhhhhcceeeeccccccc---------------eehh--ccCCccCHHHHhhcc
Confidence 56677888899999999998777444433 3345566666443 2211 122222333344457
Q ss_pred ChhhhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912 194 PKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 194 p~~l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
|+.|...|.|||++||.|++++|||+|||||||||||+|||+++.+|+.+||+|||||+++...|++++.+|+|.+.+
T Consensus 192 d~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~p-- 269 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIHP-- 269 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhcccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
|+++.++++...++-.+..|+|+||+++....+.+...+|.+||+||+|++|++++ ++++++..+..+++|+|+||
T Consensus 270 i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt----kr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 270 IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKT----KRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccch----hhhhhhhhHHHHhhheEEec
Confidence 88888888888777778899999999999999999888899999999999998664 45899999999999999999
Q ss_pred ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433 (997)
Q Consensus 354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~ 433 (997)
|||...+|.|||.++..+++.+|.. +++|..+||+...+ ..+.|++++.|+.||+.+|.+.+||||+|++|+.+
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~-f~efa~rYCd~k~v-----r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPN-FHEFAIRYCDGKQV-----RFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred CCcccCCchhhhhhhhhhccccccc-HHHHHHHhcCcccc-----ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998876 57999999998755 36689999999999999999999999999999999
Q ss_pred CCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCc
Q 001912 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 434 LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~ 513 (997)
||||+++ |.+.....+.....+++....+....+. ......+ ..+.|+..+++|+.++.+|+..|+
T Consensus 420 LPpKrr~-Vv~~~~gr~da~~~~lv~~a~~~t~~~~-----------~e~~~~~--l~l~y~~tgiaK~~av~eyi~~~~ 485 (689)
T KOG1000|consen 420 LPPKRRE-VVYVSGGRIDARMDDLVKAAADYTKVNS-----------MERKHES--LLLFYSLTGIAKAAAVCEYILENY 485 (689)
T ss_pred CCccceE-EEEEcCCccchHHHHHHHHhhhcchhhh-----------hhhhhHH--HHHHHHHhcccccHHHHHHHHhCc
Confidence 9999544 4455565555555555544433100000 0001111 235688999999999999999998
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg 593 (997)
.+ ...++.|+|||+||..++|.|+.++.++++.++||||++++.+|+.+++.|+.+.+++|+++|..|+|
T Consensus 486 ~l----------~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~g 555 (689)
T KOG1000|consen 486 FL----------PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAG 555 (689)
T ss_pred cc----------ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecc
Confidence 87 34679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhc
Q 001912 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIA 673 (997)
Q Consensus 594 ~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~ 673 (997)
+||+|++|+.|||++++|||+.+.||+||+||+||+..|.||+|+++||+||.+|+.+++|++.+.++-.|..+. +..+
T Consensus 556 vGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~~-~~~e 634 (689)
T KOG1000|consen 556 VGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDTF-RTAE 634 (689)
T ss_pred cceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcccc-eeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887665 5444
Q ss_pred hhhhhc
Q 001912 674 VEGVSY 679 (997)
Q Consensus 674 ~~~~~~ 679 (997)
.-++++
T Consensus 635 ~~g~s~ 640 (689)
T KOG1000|consen 635 KMGLSF 640 (689)
T ss_pred ccceee
Confidence 444444
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.8e-81 Score=705.57 Aligned_cols=450 Identities=23% Similarity=0.370 Sum_probs=353.4
Q ss_pred CChhhh-ccChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHHHHH
Q 001912 193 LPKSLL-DVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 193 lp~~l~-~~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
.|..+. ..|+|||++|++|++ .+|-+||||||||||||+|+|+++.++.. .||+||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 577777 799999999999975 45558999999999999999999888765 7899999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCCcccc------cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 265 WLPFCLPADIHLVFGHRNNPVHL------TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~~~------~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
|+|.+. +.++.|.+..+..+ ...++|+||||+++.+....|...+|.++||||||+|||. .+..++.
T Consensus 239 f~P~l~---~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~----~s~L~~~ 311 (971)
T KOG0385|consen 239 FTPSLN---VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNE----KSKLSKI 311 (971)
T ss_pred hCCCcc---eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcch----hhHHHHH
Confidence 999874 55566665544332 2368999999999999999999999999999999999984 4566666
Q ss_pred HHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 339 l~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
+..+ ++.++|+|||||+||++.|||++|+|+.|++|++.. +|...|.... .........+||.++.
T Consensus 312 lr~f--~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e-~F~swF~~~~-----------~~~~~e~v~~Lh~vL~ 377 (971)
T KOG0385|consen 312 LREF--KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAE-DFDSWFDFTN-----------CEGDQELVSRLHKVLR 377 (971)
T ss_pred HHHh--cccceeEeeCCcccccHHHHHHHHHhhchhhccCHH-HHHHHHcccc-----------cccCHHHHHHHHhhhh
Confidence 6665 588999999999999999999999999999999854 7776664431 1112235678999885
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
||++||+|.+|...||||.+..+++.|+..|...|.+++..--...............+....+.+||.++.+......
T Consensus 378 -pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 378 -PFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred -HHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 8999999999999999999999999999999999998653322111000000000111111233444444333211110
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~ 578 (997)
..-...-..++.+.-.+...++ ....+.+.|+|||||||++.|+|+|++++.-+++.|.||||+|+.++|...|+.||.
T Consensus 457 g~pyttdehLv~nSGKm~vLDk-LL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~ 535 (971)
T KOG0385|consen 457 GPPYTTDEHLVTNSGKMLVLDK-LLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNA 535 (971)
T ss_pred CCCCCcchHHHhcCcceehHHH-HHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCC
Confidence 0000000011111100000000 001356889999999999999999999999999999999999999999999999997
Q ss_pred CC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHH
Q 001912 579 SN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRC 657 (997)
Q Consensus 579 ~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~ 657 (997)
++ +.+|||+||+|||.||||++||+||+||.+|||..+.||.+|||||||+++|.|||||+++||||+|+.+...|+.+
T Consensus 536 ~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~L 615 (971)
T KOG0385|consen 536 PPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRL 615 (971)
T ss_pred CCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhch
Confidence 66 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCC
Q 001912 658 VSSATNGK 665 (997)
Q Consensus 658 i~~~l~g~ 665 (997)
-.-++.++
T Consensus 616 d~~VIq~g 623 (971)
T KOG0385|consen 616 DKLVIQQG 623 (971)
T ss_pred hhhhhccC
Confidence 98888777
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.5e-78 Score=688.68 Aligned_cols=465 Identities=20% Similarity=0.344 Sum_probs=372.7
Q ss_pred CCChhhhccChhhHHHHHHHHHh---cCCCeEEEcCCCchHHHHHHHHHHHHhhC----CcEEEEeCcchHHHHHHHHHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~---~~g~~ILaDemGLGKTlqaial~~~~~~~----gp~LIV~P~sL~~qW~~Ei~k 264 (997)
.+|..+...|+|||++||+||++ ++.|+||+||||||||+|.|+++..+... +|+|||||++++.||..||.+
T Consensus 197 ~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 197 KVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQT 276 (923)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHH
Confidence 68999999999999999999875 45578999999999999999998876554 799999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCC----------------cccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCC
Q 001912 265 WLPFCLPADIHLVFGHRNN----------------PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK 328 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~----------------~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~ 328 (997)
|+|++. +.++++.... .........|+||||+.++...+.+....|++||+||+|+|||
T Consensus 277 w~p~~r---v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrN-- 351 (923)
T KOG0387|consen 277 WWPPFR---VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRN-- 351 (923)
T ss_pred hCcceE---EEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccC--
Confidence 999775 3344433221 0011224679999999999988888899999999999999998
Q ss_pred CCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhh-
Q 001912 329 RTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG- 407 (997)
Q Consensus 329 ~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~- 407 (997)
++++.+.++..+ +..+|++|||||+||++.|||++++|+.||.+|+.. .|.+.|..++...++.......+..+
T Consensus 352 --pns~islackki--~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~-~F~~~f~~pI~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 352 --PNSKISLACKKI--RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLP-VFQQNFEHPINRGGYANASPRQVQTAY 426 (923)
T ss_pred --CccHHHHHHHhc--cccceEEeeCccccchHHHHHHHhhhccCCcccchH-HHHhhhhhheeccccCCCCHHHHHHHH
Confidence 567778888887 588999999999999999999999999999999965 89999999998777665544444443
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhc-cCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhh
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLV-QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~-~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (997)
.....|+.++. |++|||+|++|.. .||.|.+++++|.|++.|.+.|.++++.-.-....+......... ..+...
T Consensus 427 kca~~Lr~lI~-PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi---~iLrkI 502 (923)
T KOG0387|consen 427 KCAVALRDLIS-PYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGI---DILRKI 502 (923)
T ss_pred HHHHHHHHHhH-HHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceech---HHHHhh
Confidence 55666777774 8999999999998 999999999999999999999998664322211111111000000 112222
Q ss_pred hcccccchh--------------hhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHH-
Q 001912 487 CRLGKISYQ--------------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS- 551 (997)
Q Consensus 487 ~~l~~l~~~--------------~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~- 551 (997)
|.++.+... .....|+..+...+.. ....|+|||+|+|.+.|+|+|+.+|.
T Consensus 503 CnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~--------------W~kqg~rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 503 CNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKD--------------WKKQGDRVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred cCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHH--------------HhhCCCEEEEehhHHHHHHHHHHHHHh
Confidence 222222111 0112233333322221 23568899999999999999999999
Q ss_pred HcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 552 EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 552 ~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
..||.|+++||.|+...|+.+|++||++..++|||++|++||.|+|||+||.||+|||+|||+.+.||..|||||||+++
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccc
Q 001912 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDK 685 (997)
Q Consensus 632 V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~ 685 (997)
|.||||++.|||||+||.++-.|..+...++.+. ...+-+...++.+||....
T Consensus 649 V~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p-~q~RfF~~~dl~dLFsl~~ 701 (923)
T KOG0387|consen 649 VVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNP-EQRRFFKGNDLHDLFSLKD 701 (923)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCH-HHhhhcccccHHHHhCCCC
Confidence 9999999999999999999999999999988765 3345566666666665443
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-77 Score=676.09 Aligned_cols=466 Identities=23% Similarity=0.362 Sum_probs=358.2
Q ss_pred CChhhhc--cChhhHHHHHHHH---HhcCCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCcchHHHHHHHHHH
Q 001912 193 LPKSLLD--VILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 193 lp~~l~~--~L~pyQ~~gV~~~---l~~~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
.|+.+.. +|.|||+-||+|+ ++++-+||||||||||||+|+||+++++.+ .||.|||||+|++.||.+||.+
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~k 469 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAK 469 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHH
Confidence 4555543 7999999999994 455557899999999999999999998875 5799999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCCcccc-------cCCCeEEEEehhHHHH---HHHhhhhccccEEEeccccccccCCCCCcHH
Q 001912 265 WLPFCLPADIHLVFGHRNNPVHL-------TRFPRVVVISYTMLHR---LRKSMIEQDWALLIVDESHHVRCSKRTSEPE 334 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~~~-------~~~~~VvItTy~~l~~---~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~ 334 (997)
|+|.+. |..++|....+..+ ...++|++|||..+.. +...|...+|++||.||+|++|| ..+.
T Consensus 470 wCPsl~---Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN----~~Se 542 (941)
T KOG0389|consen 470 WCPSLK---VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN----RTSE 542 (941)
T ss_pred hCCceE---EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc----cchH
Confidence 999774 55666765443322 2268999999999875 56678889999999999999998 5689
Q ss_pred HHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHH
Q 001912 335 EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELN 414 (997)
Q Consensus 335 ~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~ 414 (997)
+|+.++.+ +++.||+|||||+||++.||+++|.|+.|++|.+...++..-|...... .+......-...++.+..
T Consensus 543 Ry~~LM~I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~---d~d~e~~~l~qerIsrAK 617 (941)
T KOG0389|consen 543 RYKHLMSI--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS---DGDIENALLSQERISRAK 617 (941)
T ss_pred HHHHhccc--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc---cchhhHHHHHHHHHHHHH
Confidence 99999998 4999999999999999999999999999999988766666666543322 122222222223456666
Q ss_pred HHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccch
Q 001912 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494 (997)
Q Consensus 415 ~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (997)
.++. ||++||.|++|+.+||||..++.+|+|+..|...|..+++.......................+.....+..+..
T Consensus 618 ~im~-PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 618 TIMK-PFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred Hhhh-HHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 6664 899999999999999999999999999999999999988777432211111110111111111112222211111
Q ss_pred hhhhhhhhhhhhhhh------------------------------ccCcccccc--Ccccc-------------ccccCC
Q 001912 495 QELGIAKLSGFREWL------------------------------SIHPVIAES--DGAAD-------------IDVNPR 529 (997)
Q Consensus 495 ~~~~~~K~~~~~~~l------------------------------~~~~~~~~~--~~~~~-------------~~~~~~ 529 (997)
......++..+.+.+ ..++-+... ....+ -.+...
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~ 776 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKK 776 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhc
Confidence 111111111111111 111100000 00000 023567
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecC
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~ 609 (997)
|+||||||||+.|+|+|+.+|...+++|.|+||+|....|+.+|+.|+.+.+++|||+||+|||.||||++||+||++|.
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~ 856 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI 856 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhh
Q 001912 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQE 671 (997)
Q Consensus 610 ~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~ 671 (997)
++||-.+.||++||||+||+|+|+||+||+++||||.|++..++|+.+-..+..+.+.....
T Consensus 857 dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~~~e 918 (941)
T KOG0389|consen 857 DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGVEDE 918 (941)
T ss_pred CCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccchhhh
Confidence 99999999999999999999999999999999999999999999999888877776554433
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=6.4e-77 Score=696.07 Aligned_cols=480 Identities=26% Similarity=0.391 Sum_probs=381.2
Q ss_pred CCChhhhccChhhHHHHHHHH--Hhc-CCCeEEEcCCCchHHHHHHHHHHH--Hhh--------CCcEEEEeCcchHHHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFG--LRR-GGRCLIADEMGLGKTLQAIAIAAC--FIS--------AGSILVVCPAILRLSW 258 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~--l~~-~g~~ILaDemGLGKTlqaial~~~--~~~--------~gp~LIV~P~sL~~qW 258 (997)
++|-.+..+||.||.+||+|+ +.+ +-.+|||||||||||+|+|++++. +.. .-|.|||||++|...|
T Consensus 967 ~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW 1046 (1549)
T KOG0392|consen 967 KIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHW 1046 (1549)
T ss_pred ccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHH
Confidence 466778899999999999995 222 224599999999999999988653 322 2378999999999999
Q ss_pred HHHHHHHCCCCCCceEEEEccCCCCccccc---CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHH
Q 001912 259 AEELERWLPFCLPADIHLVFGHRNNPVHLT---RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335 (997)
Q Consensus 259 ~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~---~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~ 335 (997)
+.|+.+|+|++.+ ..+.|....+..+. ...+|+||||+.++++...+.+..|.++|+||+|-|||++ ++.
T Consensus 1047 ~~E~~kf~pfL~v---~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~k----tkl 1119 (1549)
T KOG0392|consen 1047 KSEVKKFFPFLKV---LQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSK----TKL 1119 (1549)
T ss_pred HHHHHHhcchhhh---hhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchH----HHH
Confidence 9999999999653 23334333332222 3469999999999999999999999999999999999854 667
Q ss_pred HHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhh-hhhhccHHHHH
Q 001912 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD-FSKGVRLEELN 414 (997)
Q Consensus 336 ~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~eL~ 414 (997)
++++..+ ++.+|++|||||++|++.|||++++||+||++|+.+ .|..+|..++..-..-.....+ -.+-..++.||
T Consensus 1120 ~kavkqL--~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEK-qFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1120 TKAVKQL--RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEK-QFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHH--hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHH-HHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 8898888 589999999999999999999999999999999976 9999999887432211111122 23335678888
Q ss_pred HHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCc--------cccchhh
Q 001912 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE--------HDDSGAC 486 (997)
Q Consensus 415 ~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 486 (997)
+.+- |||+||+|++|+.+||||..+.++|+|++.|.+.|+.+.+..+..... ..+........ ..-..+.
T Consensus 1197 KqVL-PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~-~~d~~~~S~gt~~~HvFqaLqYlrKL 1274 (1549)
T KOG0392|consen 1197 KQVL-PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSS-QIDGGEESLGTDKTHVFQALQYLRKL 1274 (1549)
T ss_pred HHHH-HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcccccc-ccccchhccCcchHHHHHHHHHHHHh
Confidence 8886 899999999999999999999999999999999999988774332111 11111110000 0111122
Q ss_pred hcccccch----------------------hhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHH
Q 001912 487 CRLGKISY----------------------QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544 (997)
Q Consensus 487 ~~l~~l~~----------------------~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld 544 (997)
+.+..+.. .....+|+.++.+.+...-+-..++........-.++|+|||||+..|+|
T Consensus 1275 cnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlD 1354 (1549)
T KOG0392|consen 1275 CNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLD 1354 (1549)
T ss_pred cCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHH
Confidence 22221111 11245677777777765544433222111122246899999999999999
Q ss_pred HHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHH
Q 001912 545 GVQEFISEK---GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAED 621 (997)
Q Consensus 545 ~L~~~L~~~---gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~g 621 (997)
++++-|-+. .+.|.|+||++++.+|++++++||+++.+.|+|++|.+||.|||||+||+|||+|-+|||+.+.||+|
T Consensus 1355 lVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMD 1434 (1549)
T KOG0392|consen 1355 LVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMD 1434 (1549)
T ss_pred HHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHH
Confidence 999988765 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccc
Q 001912 622 RAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMS 683 (997)
Q Consensus 622 Ra~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~ 683 (997)
|||||||++.|+|||||++||+||+|+..++-|++..+.+++.....+..++.+++-++|..
T Consensus 1435 RAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1435 RAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTV 1496 (1549)
T ss_pred HHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999888863
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6e-76 Score=692.40 Aligned_cols=489 Identities=23% Similarity=0.395 Sum_probs=377.3
Q ss_pred hcCCChhhhc-cChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHH
Q 001912 190 IGKLPKSLLD-VILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEE 261 (997)
Q Consensus 190 ~~~lp~~l~~-~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~E 261 (997)
+...|..+.+ .||+||++|++||+ .++.+||||||||||||+|+|+++.++.. .||+|||||.|.+.+|.+|
T Consensus 359 le~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~e 438 (1373)
T KOG0384|consen 359 LEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWERE 438 (1373)
T ss_pred hhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHH
Confidence 4456766665 99999999999975 45778999999999999999999887654 6899999999999999999
Q ss_pred HHHHCCCCCCceEEEEccCCCCccc-------ccC-----CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCC
Q 001912 262 LERWLPFCLPADIHLVFGHRNNPVH-------LTR-----FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329 (997)
Q Consensus 262 i~k~~p~~~~~~i~~~~g~~~~~~~-------~~~-----~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~ 329 (997)
|..|+ .. ++.++.|....+.. ... .++++||||+++.++...|..++|.+++|||||++||
T Consensus 439 f~~w~-~m---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN--- 511 (1373)
T KOG0384|consen 439 FETWT-DM---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKN--- 511 (1373)
T ss_pred HHHHh-hh---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCc---
Confidence 99999 44 34445554332211 011 4789999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhcc
Q 001912 330 TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409 (997)
Q Consensus 330 ~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (997)
..+..+..+... +..+++++||||+||++.|||+|++||.|+.|..+. +|...| +. .....
T Consensus 512 -~~~~l~~~l~~f--~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~-~f~~~~-~~--------------~~e~~ 572 (1373)
T KOG0384|consen 512 -DESKLYESLNQF--KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWD-EFLEEF-DE--------------ETEEQ 572 (1373)
T ss_pred -hHHHHHHHHHHh--cccceeeecCCCccccHHHHHHHhcccCCCCCCcHH-HHHHhh-cc--------------hhHHH
Confidence 456778776555 688999999999999999999999999999998865 787666 21 12334
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcc
Q 001912 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489 (997)
Q Consensus 410 ~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (997)
+..|+..|. |+|+||+|++|.+.||+|.++++.|+|+..|.+.|+.++..--...............+....+++||.+
T Consensus 573 ~~~L~~~L~-P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNH 651 (1373)
T KOG0384|consen 573 VRKLQQILK-PFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNH 651 (1373)
T ss_pred HHHHHHHhh-HHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCC
Confidence 678888885 8999999999999999999999999999999999999876544433222222222333344566677776
Q ss_pred cccchhhh--hhhhh------hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEe
Q 001912 490 GKISYQEL--GIAKL------SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRID 561 (997)
Q Consensus 490 ~~l~~~~~--~~~K~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~id 561 (997)
..+..... ..... ..+..+|...-.+...+++ ...+.+.|+|||||||++.|||+|++||..+||+|.|||
T Consensus 652 pyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKL-L~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLD 730 (1373)
T KOG0384|consen 652 PYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKL-LPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLD 730 (1373)
T ss_pred ccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHH-HHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceecc
Confidence 65532211 01111 1222333322222221111 124578899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCC-ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeC
Q 001912 562 GNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640 (997)
Q Consensus 562 G~~s~~eR~~~i~~F~~~~~-~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~ 640 (997)
|++..+-|+.+|++||.+++ -+|||+||+|||.||||++||+||+||.+|||..+.||.+|||||||++.|+|||||++
T Consensus 731 GsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 731 GSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred CCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 99999999999999997654 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhHHHHHhhhC-----CC--------hhhhhhhchhhhhccccccc-cCcCccccchhhccCchHHHh
Q 001912 641 DTTDESHWQNLNKSLRCVSSATN-----GK--------YDALQEIAVEGVSYLEMSDK-TDRGSEDLTLDQVASSDQFQE 706 (997)
Q Consensus 641 gTiEe~i~~~l~~K~~~i~~~l~-----g~--------~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 706 (997)
+|+||.|+++..+|+-+-..++. +. ++.+..+.--|+..+|+..+ ......++++++|..+++...
T Consensus 811 ~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~~~ 890 (1373)
T KOG0384|consen 811 NTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAETRI 890 (1373)
T ss_pred CchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccccc
Confidence 99999999999999854433332 11 22333333345555565533 333455688888887776543
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-72 Score=691.29 Aligned_cols=436 Identities=24% Similarity=0.409 Sum_probs=347.1
Q ss_pred CCChhhhccChhhHHHHHHHHHh---cCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHHHHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~---~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
..|..+..+|+|||++||+||+. +|.+||||||||||||+|+|+++.++.. .+|+|||||.+++.||.+||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 46888889999999999999864 6778999999999999999999887653 4799999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCCccc------ccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 265 WLPFCLPADIHLVFGHRNNPVH------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~~------~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
|+|.+. +..+.|....... ....++|+||||+++.+....+....|++|||||||+||| ..+..+++
T Consensus 241 w~p~l~---v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN----~~Sklska 313 (1033)
T PLN03142 241 FCPVLR---AVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN----ENSLLSKT 313 (1033)
T ss_pred HCCCCc---eEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC----HHHHHHHH
Confidence 999653 3444454322111 1235789999999999998889999999999999999998 44667778
Q ss_pred HHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 339 l~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
+..+ +++++|+|||||++|++.|||++++||.|+.|++.. .|...|..... ......+.+|+.++.
T Consensus 314 lr~L--~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~-~F~~~f~~~~~-----------~~~~e~i~~L~~~L~ 379 (1033)
T PLN03142 314 MRLF--STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE-TFDEWFQISGE-----------NDQQEVVQQLHKVLR 379 (1033)
T ss_pred HHHh--hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHH-HHHHHHccccc-----------cchHHHHHHHHHHhh
Confidence 7776 588999999999999999999999999999999854 78877765221 112234678888885
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchh---
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ--- 495 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--- 495 (997)
|+|+||+|.+|...||++.+.++.+.|++.|...|..++........... ...........+..++.+..+...
T Consensus 380 -pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~--~~~~LlnilmqLRk~cnHP~L~~~~ep 456 (1033)
T PLN03142 380 -PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEP 456 (1033)
T ss_pred -HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhCCHHhhhcccc
Confidence 79999999999999999999999999999999999887654322111000 000000000111112211111000
Q ss_pred ----------hhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Q 001912 496 ----------ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565 (997)
Q Consensus 496 ----------~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s 565 (997)
.....|+..+..++. .+...|+||||||||+.++++|+++|...|+.|++|||+++
T Consensus 457 ~~~~~~~e~lie~SgKl~lLdkLL~--------------~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts 522 (1033)
T PLN03142 457 GPPYTTGEHLVENSGKMVLLDKLLP--------------KLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTG 522 (1033)
T ss_pred cCcccchhHHhhhhhHHHHHHHHHH--------------HHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCC
Confidence 001223322222222 13457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 566 PRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 566 ~~eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
..+|+.++++||.++ ...|||+||+|||+||||+.||+||+||++|||+.+.||+||+|||||+++|+||+|+++||||
T Consensus 523 ~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 523 GEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred HHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999999999999654 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhhCCC
Q 001912 645 ESHWQNLNKSLRCVSSATNGK 665 (997)
Q Consensus 645 e~i~~~l~~K~~~i~~~l~g~ 665 (997)
|+|++++.+|+.+...+++++
T Consensus 603 EkIlera~~Kl~Ld~~Vi~~g 623 (1033)
T PLN03142 603 EKVIERAYKKLALDALVIQQG 623 (1033)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999988888754
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-71 Score=641.85 Aligned_cols=461 Identities=24% Similarity=0.394 Sum_probs=352.6
Q ss_pred CCChhhhccChhhHHHHHHHH---HhcCCCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCcchHHHHHHHHHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~---l~~~g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
.+|..|.+.||.||+.|+.|| ++++-++|||||||||||||.|++++++. ..||.|||||++++.||.-||++
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKR 686 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKR 686 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhh
Confidence 478888999999999999995 56777889999999999999999988764 46799999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCCccc----cc--CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 265 WLPFCLPADIHLVFGHRNNPVH----LT--RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~~----~~--~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
|+|.++ |..++|....+.. |. ..++|.||||..+..+...|...+|.++|+||||+|||. .+++|++
T Consensus 687 wcPglK---ILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnf----ksqrWQA 759 (1958)
T KOG0391|consen 687 WCPGLK---ILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNF----KSQRWQA 759 (1958)
T ss_pred hCCcce---EeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcch----hHHHHHH
Confidence 999875 4445554332221 11 246899999999999999999999999999999999985 4788999
Q ss_pred HHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 339 l~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
++.+ ++.+||+|||||++|++.|||+|+.||.|..|.+.. +|...|.++-...-..+ +++. ..-+.+||+.++
T Consensus 760 llnf--nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd-~fk~wfsnPltgmiEgs---qeyn-~klV~RLHkVlr 832 (1958)
T KOG0391|consen 760 LLNF--NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHD-IFKPWFSNPLTGMIEGS---QEYN-HKLVIRLHKVLR 832 (1958)
T ss_pred Hhcc--chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhh-hHHHHhcCcchhhcccc---hhhc-hHHHHHHHHHhH
Confidence 9988 589999999999999999999999999999997754 88888887763221111 1221 234678999996
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccc-------------------cC----------
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD-------------------AT---------- 469 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~-------------------~~---------- 469 (997)
||++||+|.+|.++||.|.+++|+|.|+..|...|..++......... ++
T Consensus 833 -PfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ 911 (1958)
T KOG0391|consen 833 -PFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVG 911 (1958)
T ss_pred -HHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCC
Confidence 899999999999999999999999999999999998765332211000 00
Q ss_pred -------------------------CCC--------------------------------CCCCC---------------
Q 001912 470 -------------------------NDK--------------------------------TPKDS--------------- 477 (997)
Q Consensus 470 -------------------------~~~--------------------------------~~~~~--------------- 477 (997)
... .....
T Consensus 912 ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F 991 (1958)
T KOG0391|consen 912 SSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPF 991 (1958)
T ss_pred cccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCcccccccc
Confidence 000 00000
Q ss_pred ------------Cc------------------------------------------------------------------
Q 001912 478 ------------DE------------------------------------------------------------------ 479 (997)
Q Consensus 478 ------------~~------------------------------------------------------------------ 479 (997)
.+
T Consensus 992 ~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~ 1071 (1958)
T KOG0391|consen 992 QTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLL 1071 (1958)
T ss_pred ccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccc
Confidence 00
Q ss_pred --------------------------------------------------c-----------------------------
Q 001912 480 --------------------------------------------------H----------------------------- 480 (997)
Q Consensus 480 --------------------------------------------------~----------------------------- 480 (997)
.
T Consensus 1072 ~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg 1151 (1958)
T KOG0391|consen 1072 RAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYG 1151 (1958)
T ss_pred cCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccc
Confidence 0
Q ss_pred ccchhhhccccc---chh-----h---hhhhhhhhhhhhhcc--------------------------------------
Q 001912 481 DDSGACCRLGKI---SYQ-----E---LGIAKLSGFREWLSI-------------------------------------- 511 (997)
Q Consensus 481 ~~~~~~~~l~~l---~~~-----~---~~~~K~~~~~~~l~~-------------------------------------- 511 (997)
......+.+..- .+. + ..-.+++.+.++|..
T Consensus 1152 ~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrse 1231 (1958)
T KOG0391|consen 1152 RELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSE 1231 (1958)
T ss_pred hhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHH
Confidence 000000000000 000 0 000000000000000
Q ss_pred -Cccccc----------cCcccc---------------ccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Q 001912 512 -HPVIAE----------SDGAAD---------------IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTL 565 (997)
Q Consensus 512 -~~~~~~----------~~~~~~---------------~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s 565 (997)
.+.... ...+.. ..+...|++||||+|++.|+|.|+.+|...|+-|+||||+++
T Consensus 1232 l~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~ 1311 (1958)
T KOG0391|consen 1232 LAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTS 1311 (1958)
T ss_pred hccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCcc
Confidence 000000 000000 134678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHH
Q 001912 566 PRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645 (997)
Q Consensus 566 ~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe 645 (997)
.++|+.++++||.|..++|||+||+.||+||||++||+|||||.+|||..+.||.+|+|||||+++|+|||||.+.||||
T Consensus 1312 vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1312 VEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhhhCCChh
Q 001912 646 SHWQNLNKSLRCVSSATNGKYD 667 (997)
Q Consensus 646 ~i~~~l~~K~~~i~~~l~g~~~ 667 (997)
.|+...++|..+-+-+++|+.-
T Consensus 1392 niLkkanqKr~L~evaiqggdf 1413 (1958)
T KOG0391|consen 1392 NILKKANQKRMLDEVAIQGGDF 1413 (1958)
T ss_pred HHHhhhhHHHHHHHHhhccCCc
Confidence 9999999998777777777633
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-70 Score=608.46 Aligned_cols=458 Identities=24% Similarity=0.393 Sum_probs=352.2
Q ss_pred CCChhhhccChhhHHHHHHHH---HhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHHHHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFG---LRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~---l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
..|.-|..+|..||+.|++|+ +.+|-++|||||||||||+|+|++++++.+ .||+|||+|+|+++||+.||.+
T Consensus 559 ~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisr 638 (1185)
T KOG0388|consen 559 PQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISR 638 (1185)
T ss_pred cCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHH
Confidence 578889999999999999996 567778999999999999999999998875 5899999999999999999999
Q ss_pred HCCCCCCceEEEEccCCCCcc------------cccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCc
Q 001912 265 WLPFCLPADIHLVFGHRNNPV------------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSE 332 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~------------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~ 332 (997)
|+|.+.. .-+.|....+. .-...++||||||+++..+...|...+|.++|+|||+.||+ ..
T Consensus 639 FlP~~k~---lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKS----Ss 711 (1185)
T KOG0388|consen 639 FLPSFKV---LPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKS----SS 711 (1185)
T ss_pred hCcccee---ecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhh----hh
Confidence 9998753 33334333221 12235799999999999999999999999999999999986 45
Q ss_pred HHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHH
Q 001912 333 PEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEE 412 (997)
Q Consensus 333 s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 412 (997)
+.+++.++.. +++.||+||||||+|+..|||++|.|+.|.+|.+- .+|.+.|...+......+. .-....+.+
T Consensus 712 S~RWKtLLsF--~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDsh-neFseWFSKdIEshAe~~~----tlneqqL~R 784 (1185)
T KOG0388|consen 712 SSRWKTLLSF--KCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH-NEFSEWFSKDIESHAEMNT----TLNEQQLQR 784 (1185)
T ss_pred hhHHHHHhhh--hccceeeecCCccchHHHHHHHHHHHHhhHhhhch-HHHHHHHhhhhHhHHHhcC----CcCHHHHHH
Confidence 7789999887 79999999999999999999999999999999874 4888888765532211111 112345788
Q ss_pred HHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccc----------cCCCCC---------
Q 001912 413 LNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD----------ATNDKT--------- 473 (997)
Q Consensus 413 L~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~----------~~~~~~--------- 473 (997)
||.+|+ |||+||.|++|..+|..|.+..++|.|+..|...|..+-..+...... ++.+..
T Consensus 785 LH~ILK-PFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L 863 (1185)
T KOG0388|consen 785 LHAILK-PFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGL 863 (1185)
T ss_pred HHHHHh-HHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCccee
Confidence 999996 899999999999999999999999999999988887654333211000 000000
Q ss_pred ------------CCCCCc-------------------------------------------------------------c
Q 001912 474 ------------PKDSDE-------------------------------------------------------------H 480 (997)
Q Consensus 474 ------------~~~~~~-------------------------------------------------------------~ 480 (997)
....+. .
T Consensus 864 ~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e 943 (1185)
T KOG0388|consen 864 SLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVE 943 (1185)
T ss_pred EEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHH
Confidence 000000 0
Q ss_pred ccchhhhc-c-----------ccc-chhhh--------hhhhh----------hhhhhhhcc---------------Ccc
Q 001912 481 DDSGACCR-L-----------GKI-SYQEL--------GIAKL----------SGFREWLSI---------------HPV 514 (997)
Q Consensus 481 ~~~~~~~~-l-----------~~l-~~~~~--------~~~K~----------~~~~~~l~~---------------~~~ 514 (997)
...+...+ + ..+ ..+.. .++++ ..+-++-.. ...
T Consensus 944 ~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~F 1023 (1185)
T KOG0388|consen 944 EAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTF 1023 (1185)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhh
Confidence 00000000 0 000 00000 00000 000000000 001
Q ss_pred ccccCcccc-----ccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec
Q 001912 515 IAESDGAAD-----IDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589 (997)
Q Consensus 515 ~~~~~~~~~-----~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt 589 (997)
+..+.++.. ..+...|++||+|.|++.|+|+|+++|..+|+.|.++||+....+|..+|.+|+. ++++|||+||
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLST 1102 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLST 1102 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEec
Confidence 111111111 1356889999999999999999999999999999999999999999999999995 8999999999
Q ss_pred cccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCC
Q 001912 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665 (997)
Q Consensus 590 ~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~ 665 (997)
+|||.||||++||+|||||.+|||..+.||++||||.||+++|+||+|++.|||||+|+++.++|-.+-.-++.|+
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888775
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.8e-67 Score=616.02 Aligned_cols=460 Identities=24% Similarity=0.301 Sum_probs=359.9
Q ss_pred CCChhhhccChhhHHHHHHHHHh---------cCCCeEEEcCCCchHHHHHHHHHHHHhhCC--------cEEEEeCcch
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLR---------RGGRCLIADEMGLGKTLQAIAIAACFISAG--------SILVVCPAIL 254 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~---------~~g~~ILaDemGLGKTlqaial~~~~~~~g--------p~LIV~P~sL 254 (997)
.+.|.+...|||||++|+.|+++ ..+|||+||+||+|||+|.|++++.|+..+ +.|||||++|
T Consensus 230 ~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sL 309 (776)
T KOG0390|consen 230 VIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSL 309 (776)
T ss_pred EecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHH
Confidence 35677889999999999999875 346899999999999999999999988764 4799999999
Q ss_pred HHHHHHHHHHHCCCCCCceEEEEccCCCC-cc---------cccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccc
Q 001912 255 RLSWAEELERWLPFCLPADIHLVFGHRNN-PV---------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 255 ~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~-~~---------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~i 324 (997)
+.+|++||.+|....... ...+.+.++. .. ...-..-|.|.||+.++.....+....+++||+||+|++
T Consensus 310 v~nWkkEF~KWl~~~~i~-~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRIN-PLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHHhccccccc-eeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCc
Confidence 999999999998742111 1222333332 00 011124689999999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhh
Q 001912 325 RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404 (997)
Q Consensus 325 KN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 404 (997)
|| ..+..++++..+ ++++||+|||||+||++.|+|++++|++|+++|+.. .|.+.|..+.......+....+.
T Consensus 389 kN----~~s~~~kaL~~l--~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~-sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 389 KN----SDSLTLKALSSL--KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSIS-SFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred cc----hhhHHHHHHHhc--CCCceEEeeCCcccccHHHHHHHHhhcChhhccchH-HHHHHhhcccccccCCCcchhhh
Confidence 98 457889999988 699999999999999999999999999999999854 89999988775433322333333
Q ss_pred hhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHH--hhhccccCCCCCCCCCCcccc
Q 001912 405 SKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVI--NDSEKDATNDKTPKDSDEHDD 482 (997)
Q Consensus 405 ~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 482 (997)
....++.+|..+.. .|++||+.+...+.||++.+.+|.+.+++.|...|..+.... ...... .......
T Consensus 462 ~~~~rl~eL~~~t~-~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~--------~l~~~~~ 532 (776)
T KOG0390|consen 462 EREERLQELRELTN-KFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGY--------ALELITK 532 (776)
T ss_pred hhHHHHHHHHHHHH-hheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcc--------hhhHHHH
Confidence 33556888888886 599999998899999999999999999999999999887752 110000 0000000
Q ss_pred chhhhcccccc----------------------------hhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEE
Q 001912 483 SGACCRLGKIS----------------------------YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMI 534 (997)
Q Consensus 483 ~~~~~~l~~l~----------------------------~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvL 534 (997)
....+.+..+. .......|+..+..++.. .......|++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-------------~~ek~~~~~v 599 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-------------IREKLLVKSV 599 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-------------HhhhcceEEE
Confidence 00111111100 000112222222222111 0123456888
Q ss_pred EEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCc-eEEEEeccccccccCcccccEEEEecCCCCc
Q 001912 535 IFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV-KIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613 (997)
Q Consensus 535 VFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~-~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp 613 (997)
+.++|+.++|+++..++.+|+.++++||+|+..+|+.+|+.||++++. +|||+|++|||+||||.+|++||+||++|||
T Consensus 600 ~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNP 679 (776)
T KOG0390|consen 600 LISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNP 679 (776)
T ss_pred EeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCc
Confidence 889999999999999999999999999999999999999999987776 9999999999999999999999999999999
Q ss_pred cHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccc
Q 001912 614 SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLE 681 (997)
Q Consensus 614 ~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~ 681 (997)
+.+.||++||||.||+++|+||+|++.||+||+||+++..|..+.+.+++...+.-..+..+.+..++
T Consensus 680 a~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf 747 (776)
T KOG0390|consen 680 AVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLF 747 (776)
T ss_pred hhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887776665554444433
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.8e-66 Score=596.54 Aligned_cols=463 Identities=19% Similarity=0.323 Sum_probs=347.1
Q ss_pred cCCChhhh-ccChhhHHHHHHHHHh---cCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHHH
Q 001912 191 GKLPKSLL-DVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 191 ~~lp~~l~-~~L~pyQ~~gV~~~l~---~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~Ei 262 (997)
...|..+. ++|++||+.|++||+. ++-++|||||||||||+|+|+++.++++ .||.|||||.+++.+|..||
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef 463 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEF 463 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhc
Confidence 45677665 4999999999999854 4558899999999999999999998875 68999999999999999999
Q ss_pred HHHCCCCCCceEEEEccCCCCcccc-----cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHH
Q 001912 263 ERWLPFCLPADIHLVFGHRNNPVHL-----TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337 (997)
Q Consensus 263 ~k~~p~~~~~~i~~~~g~~~~~~~~-----~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~ 337 (997)
.+|.|.+. ...+.|....+..+ ...++|++|||+.+.++...|.++.|.++||||+|++||.. ++...
T Consensus 464 ~kWaPSv~---~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~----~KLt~ 536 (1157)
T KOG0386|consen 464 PKWAPSVQ---KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAI----CKLTD 536 (1157)
T ss_pred ccccccee---eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchh----hHHHH
Confidence 99999753 23344544433222 23689999999999999999999999999999999999854 34344
Q ss_pred HHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHH
Q 001912 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417 (997)
Q Consensus 338 al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l 417 (997)
.+.. ...+++|++|||||++|++.|||++|+|+-|.+|.+.. .|..-|..+....+. .....+-...-.+.+||..|
T Consensus 537 ~L~t-~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~-~FeqWFN~PFantGe-k~eLteEEtlLIIrRLHkVL 613 (1157)
T KOG0386|consen 537 TLNT-HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCK-AFEQWFNQPFANTGE-KVELTEEETLLIIRRLHKVL 613 (1157)
T ss_pred Hhhc-cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHh-HHHHHhhhhhhhcCC-cccccchHHHHHHHHHHHhh
Confidence 4433 33688999999999999999999999999999998754 777777666544431 11111222334567899999
Q ss_pred HhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccc-cCCCCCCCCCCccccchhhhcccccchhh
Q 001912 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD-ATNDKTPKDSDEHDDSGACCRLGKISYQE 496 (997)
Q Consensus 418 ~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 496 (997)
+ ||++||+|++|..+||.|.+.++.|.|+..|...|....+.-.-.... ..........+......++|.++.+....
T Consensus 614 R-PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 614 R-PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred h-HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 6 899999999999999999999999999999998887643221110000 00000000011111222233322221100
Q ss_pred hhh-hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHH
Q 001912 497 LGI-AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHS 575 (997)
Q Consensus 497 ~~~-~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~ 575 (997)
... .-.....++++..-.+...+ -....+...|++||.|++++.++++++++|.-++++|.++||+|..++|..+++.
T Consensus 693 e~~~~~~~~~~dL~R~sGKfELLD-RiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 693 ENSYTLHYDIKDLVRVSGKFELLD-RILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred ccccccccChhHHHHhccHHHHHH-hhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 000 00000001111000000000 0001346789999999999999999999999999999999999999999999999
Q ss_pred hccCC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 576 FQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 576 F~~~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
||.++ .+++||+|++|||.|+|||.|++||+||.+|||..+.||.+|||||||+++|.|+|+++.+++||+|+.....|
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 99765 47899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCC
Q 001912 655 LRCVSSATNGK 665 (997)
Q Consensus 655 ~~~i~~~l~g~ 665 (997)
+++-..++..+
T Consensus 852 l~~d~kviqag 862 (1157)
T KOG0386|consen 852 LDVDGKVIQAG 862 (1157)
T ss_pred cCchHhhhhcc
Confidence 98877776544
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-63 Score=532.23 Aligned_cols=473 Identities=23% Similarity=0.390 Sum_probs=343.4
Q ss_pred cCCChhhhccChhhHHHHHHHHHhc----CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHC
Q 001912 191 GKLPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWL 266 (997)
Q Consensus 191 ~~lp~~l~~~L~pyQ~~gV~~~l~~----~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~ 266 (997)
...|..|.-.|.|||++|+.|+..+ -+|+|||||||+|||+|+|+++..-....|+|||||...+.||.+||.++.
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T 254 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHT 254 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhc
Confidence 3578889999999999999998753 235799999999999999999887777889999999999999999999998
Q ss_pred CCCCCceEEEEccCCCCc--ccccCCCeEEEEehhHHHHHH-----------------HhhhhccccEEEeccccccccC
Q 001912 267 PFCLPADIHLVFGHRNNP--VHLTRFPRVVVISYTMLHRLR-----------------KSMIEQDWALLIVDESHHVRCS 327 (997)
Q Consensus 267 p~~~~~~i~~~~g~~~~~--~~~~~~~~VvItTy~~l~~~~-----------------~~l~~~~~~~VIvDEaH~iKN~ 327 (997)
.. ...+.+++|.+.+. .++ ..+|||+|||..+.... ..|..++|..||+||||.||+.
T Consensus 255 ~g--slkv~~YhG~~R~~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 255 SG--SLKVYIYHGAKRDKNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred cC--ceEEEEEecccccCCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 74 34566666655432 233 37899999999886531 2366789999999999999974
Q ss_pred CCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHH-Hhhccc---------------
Q 001912 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAK-TYCDVK--------------- 391 (997)
Q Consensus 328 ~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~-~~~~~~--------------- 391 (997)
.+++.+++..+ .+.++|+|||||+||+..|||++++||+-+.|.-+ |.. .+|...
T Consensus 332 ----~snTArAV~~L--~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyy---fc~~cdc~~~~~~ftdr~~c~~c~h 402 (791)
T KOG1002|consen 332 ----QSNTARAVFAL--ETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYY---FCTKCDCASLDWKFTDRMHCDHCSH 402 (791)
T ss_pred ----cccHHHHHHhh--HhhhhhhccCCcchhhHHHHHHHHHHHccCcchhh---hhhhccccccceeecccccCCcccc
Confidence 46668888887 58889999999999999999999999987766421 211 111110
Q ss_pred -----------------cccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhh--ccCCCceEEEEEEecChhHHH
Q 001912 392 -----------------TVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL--VQLPPKRRQIIRLLLKRSEIV 452 (997)
Q Consensus 392 -----------------~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~--~~LP~k~~~~i~~~l~~~q~~ 452 (997)
...+..| .+.......+.+++ .+|+||+|-.-. ..|||....+..-.++.++..
T Consensus 403 ~~m~h~~~~n~~mlk~IqkfG~eG------pGk~af~~~h~llk-~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D 475 (791)
T KOG1002|consen 403 NIMQHTCFFNHFMLKPIQKFGVEG------PGKEAFNNIHTLLK-NIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKD 475 (791)
T ss_pred hhhhhhhhhcccccccchhhcccC------chHHHHHHHHHHHH-HHHHHHhhcccccccCCCccceeeehhhhhhHHHH
Confidence 1111111 11122234555665 699999996533 258998888777778888877
Q ss_pred HHHHHHHHHhhhcc-------------------------ccCCCCCCC-------CCCc-cccchhh-------------
Q 001912 453 SAKAAVGVINDSEK-------------------------DATNDKTPK-------DSDE-HDDSGAC------------- 486 (997)
Q Consensus 453 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~-------~~~~-~~~~~~~------------- 486 (997)
.|..+......... ..+.+.... ..+. ...|+.|
T Consensus 476 ~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~Ch 555 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCH 555 (791)
T ss_pred HHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhh
Confidence 77664432221100 011110000 0000 0001000
Q ss_pred ---hccc-----------------------c--cchhhhhhhhhhhh-----hhhhccC------ccccccCcccccccc
Q 001912 487 ---CRLG-----------------------K--ISYQELGIAKLSGF-----REWLSIH------PVIAESDGAADIDVN 527 (997)
Q Consensus 487 ---~~l~-----------------------~--l~~~~~~~~K~~~~-----~~~l~~~------~~~~~~~~~~~~~~~ 527 (997)
|++- . +........+++++ ...+... .+.+....+..+...
T Consensus 556 H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r 635 (791)
T KOG1002|consen 556 HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRER 635 (791)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHc
Confidence 0000 0 00000000001110 0000000 000000000111234
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
+..-|.|||+||++|+|.|.-.|.+.|+..+.+.|+|++..|...|+.|.++.+++|||+|.+|||+.|||+.|++|+++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhcccc
Q 001912 608 ELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 608 D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~ 682 (997)
||||||++..||.+|+|||||.++|.|.+|+.++|||++|...+++|.+++.+++++.++++..+..+++.+||.
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888774
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.1e-62 Score=556.91 Aligned_cols=487 Identities=23% Similarity=0.358 Sum_probs=360.4
Q ss_pred hhcCCChhhhccChhhHHHHHHHHHh------------cCCCeEEEcCCCchHHHHHHHHHHHHhh-----CCcEEEEeC
Q 001912 189 MIGKLPKSLLDVILPFQLEGVRFGLR------------RGGRCLIADEMGLGKTLQAIAIAACFIS-----AGSILVVCP 251 (997)
Q Consensus 189 ~~~~lp~~l~~~L~pyQ~~gV~~~l~------------~~g~~ILaDemGLGKTlqaial~~~~~~-----~gp~LIV~P 251 (997)
.+-.+|.+|...|.|||..||+|||. .|.|||||+-||||||+|+|++++..+. -..+|||||
T Consensus 657 ~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~P 736 (1567)
T KOG1015|consen 657 PLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCP 736 (1567)
T ss_pred chhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcc
Confidence 34468889999999999999999975 3669999999999999999999876653 346999999
Q ss_pred cchHHHHHHHHHHHCCCCCCc-eEEE--EccCCCC------cccccCCCeEEEEehhHHHHHH---------------Hh
Q 001912 252 AILRLSWAEELERWLPFCLPA-DIHL--VFGHRNN------PVHLTRFPRVVVISYTMLHRLR---------------KS 307 (997)
Q Consensus 252 ~sL~~qW~~Ei~k~~p~~~~~-~i~~--~~g~~~~------~~~~~~~~~VvItTy~~l~~~~---------------~~ 307 (997)
.+++.||..||.+|.+.+... .+.+ +..-+.. ...|.....|+|+.|++++.+. ..
T Consensus 737 lNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~ 816 (1567)
T KOG1015|consen 737 LNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKA 816 (1567)
T ss_pred hHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHh
Confidence 999999999999999864322 2322 2222221 1123445689999999998642 23
Q ss_pred hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHh
Q 001912 308 MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTY 387 (997)
Q Consensus 308 l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~ 387 (997)
+...++|+|||||||.|||. .+..++++..+ +++|||+|||||+||++.|+|+|++|+.|+++|+.. +|+++|
T Consensus 817 lvdpGPD~vVCDE~HiLKNe----ksa~Skam~~i--rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~-EfrNRF 889 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEGHILKNE----KSAVSKAMNSI--RTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIK-EFRNRF 889 (1567)
T ss_pred ccCCCCCeEEecchhhhccc----hHHHHHHHHHH--HhheeEEeecCchhhhhHHHHHHHHhcccccccCcH-HHHHhh
Confidence 44568999999999999984 46678888887 589999999999999999999999999999999976 999999
Q ss_pred hccccccccccchhhhhhhh-ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhcc
Q 001912 388 CDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEK 466 (997)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~-~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~ 466 (997)
.+++........+..+++-. .+..-|+.+|. .++-|+-...+...||||.+.+|.+.|++.|...|..++......+.
T Consensus 890 vNpI~nGq~~dST~~DVr~Mk~RsHILye~Lk-gcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~ 968 (1567)
T KOG1015|consen 890 VNPIQNGQCADSTMVDVRVMKKRSHILYEMLK-GCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGN 968 (1567)
T ss_pred cCccccCccCCCcHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCC
Confidence 99998766666666666544 45566777886 47788888888899999999999999999999999887763222111
Q ss_pred c------------------------------------c-----CCC---CCCCCCCc--c-----ccch-----------
Q 001912 467 D------------------------------------A-----TND---KTPKDSDE--H-----DDSG----------- 484 (997)
Q Consensus 467 ~------------------------------------~-----~~~---~~~~~~~~--~-----~~~~----------- 484 (997)
. + ..+ ......++ . ..+.
T Consensus 969 d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~D 1048 (1567)
T KOG1015|consen 969 DSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKD 1048 (1567)
T ss_pred ccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccc
Confidence 0 0 000 00000000 0 0000
Q ss_pred ----h---hh----------cccccchh---hhh------hhhhhhh-----------hhhhccC------ccccccCcc
Q 001912 485 ----A---CC----------RLGKISYQ---ELG------IAKLSGF-----------REWLSIH------PVIAESDGA 521 (997)
Q Consensus 485 ----~---~~----------~l~~l~~~---~~~------~~K~~~~-----------~~~l~~~------~~~~~~~~~ 521 (997)
. .. ..+..... +.+ ..-+..+ -+|+... ..+..+.++
T Consensus 1049 esss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKm 1128 (1567)
T KOG1015|consen 1049 ESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKM 1128 (1567)
T ss_pred ccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcce
Confidence 0 00 00000000 000 0000000 1111100 000000000
Q ss_pred cc-c----cccCCCCeEEEEeCCHHHHHHHHHHHHH----------------------cCCeEEEEeCCCCHHHHHHHHH
Q 001912 522 AD-I----DVNPRSNKMIIFAHHLKVLDGVQEFISE----------------------KGIGFVRIDGNTLPRDRQSAVH 574 (997)
Q Consensus 522 ~~-~----~~~~~~~KvLVFs~~~~~ld~L~~~L~~----------------------~gi~~~~idG~~s~~eR~~~i~ 574 (997)
.. + ...+-|+|+|||+|....||.|+.+|.. .|..|++|||++...+|++.++
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 00 0 1134599999999999999999999973 3678999999999999999999
Q ss_pred HhccCCC--ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHH
Q 001912 575 SFQLSNE--VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 575 ~F~~~~~--~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
+||+..+ .++|||||+|||.||||.+||+||+||-.|||+.+.|+|-|+||.||+++|+||||++.||+||+||.++-
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQV 1288 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQV 1288 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHH
Confidence 9997655 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhCCChhhhhhhchhhhhcccccc
Q 001912 653 KSLRCVSSATNGKYDALQEIAVEGVSYLEMSD 684 (997)
Q Consensus 653 ~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~ 684 (997)
.|..+.-.++|.. .+-+.+...++.+|+.++
T Consensus 1289 TKqsls~RVVDeq-Qv~Rhy~~neLteLy~fe 1319 (1567)
T KOG1015|consen 1289 TKQSLSFRVVDEQ-QVERHYTMNELTELYTFE 1319 (1567)
T ss_pred hHhhhhhhhhhHH-HHHHHhhHhhhHHHhhcC
Confidence 9998888888654 666777777777766544
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=9.1e-60 Score=527.74 Aligned_cols=465 Identities=25% Similarity=0.343 Sum_probs=339.9
Q ss_pred CCChhhhccChhhHHHHHHHHHhc----CCCeEEEcCCCchHHHHHHHHHHHHhh-----------CCcEEEEeCcchHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFIS-----------AGSILVVCPAILRL 256 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~~----~g~~ILaDemGLGKTlqaial~~~~~~-----------~gp~LIV~P~sL~~ 256 (997)
.-|.++.-.|+|||+.|..||+-+ +.|+||||+||+|||+++|+++..-.. ..++|||||.||++
T Consensus 317 e~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~ 396 (901)
T KOG4439|consen 317 ETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIH 396 (901)
T ss_pred CCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHH
Confidence 457788889999999999999753 447899999999999999998765431 12599999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEccCCC--CcccccCCCeEEEEehhHHHH----------HHHhhhhccccEEEecccccc
Q 001912 257 SWAEELERWLPFCLPADIHLVFGHRN--NPVHLTRFPRVVVISYTMLHR----------LRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 257 qW~~Ei~k~~p~~~~~~i~~~~g~~~--~~~~~~~~~~VvItTy~~l~~----------~~~~l~~~~~~~VIvDEaH~i 324 (997)
||..|+.+-+..- ...+.+++|... ......+.+|||||||..+.+ ....+..+.|..||+||||.|
T Consensus 397 qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~I 475 (901)
T KOG4439|consen 397 QWEAEVARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNI 475 (901)
T ss_pred HHHHHHHHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhh
Confidence 9999999987543 345666666542 222233478999999999876 123477789999999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhh
Q 001912 325 RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDF 404 (997)
Q Consensus 325 KN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 404 (997)
||+. ++...++..+. +..||+|||||++|+.+|+|+++.||+-..|++.. +++...+...
T Consensus 476 rN~~----tq~S~AVC~L~--a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~--~Wke~i~~~s------------ 535 (901)
T KOG4439|consen 476 RNSN----TQCSKAVCKLS--AKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLK--QWKENIDNMS------------ 535 (901)
T ss_pred cccc----hhHHHHHHHHh--hcceeecccCccccchhHHHHHHHHhcCCCcchHH--HHHHhccCcc------------
Confidence 9854 56688888885 77889999999999999999999999999998743 3333322110
Q ss_pred hhhccHHHHHHHHHhHHHHHHHhhhhhc-----cCCCceEEEEEEecChhHHHHHHHHHHHHhhhc-------cccCCCC
Q 001912 405 SKGVRLEELNVLLKQTVMIRRLKQHLLV-----QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSE-------KDATNDK 472 (997)
Q Consensus 405 ~~~~~~~eL~~~l~~~~~lRR~k~~v~~-----~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~-------~~~~~~~ 472 (997)
.-......++..+.|+||||+..-. .||++...++.++|+..+...|.-++....... .....+.
T Consensus 536 ---~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~ 612 (901)
T KOG4439|consen 536 ---KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDG 612 (901)
T ss_pred ---ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 1113344566678999999998755 799999999999999998887765443322211 0000000
Q ss_pred C--------------CC-----------CCCcc-c--cchhhhcccccch-----------h----------hhhhhhhh
Q 001912 473 T--------------PK-----------DSDEH-D--DSGACCRLGKISY-----------Q----------ELGIAKLS 503 (997)
Q Consensus 473 ~--------------~~-----------~~~~~-~--~~~~~~~l~~l~~-----------~----------~~~~~K~~ 503 (997)
. .. ..+.. . .+....++++.+. . +....+..
T Consensus 613 ~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~ 692 (901)
T KOG4439|consen 613 GYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEED 692 (901)
T ss_pred CccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhh
Confidence 0 00 00000 0 0000011111100 0 00000111
Q ss_pred hhhhhhccCccccccCc----------------------------cccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 001912 504 GFREWLSIHPVIAESDG----------------------------AADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI 555 (997)
Q Consensus 504 ~~~~~l~~~~~~~~~~~----------------------------~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi 555 (997)
.+.+.-.........+. +..+ +....+|++|.+|++.+++++...|...|.
T Consensus 693 ~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i-~~~skeK~viVSQwtsvLniv~~hi~~~g~ 771 (901)
T KOG4439|consen 693 NLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETI-LTSSKEKVVIVSQWTSVLNIVRKHIQKGGH 771 (901)
T ss_pred HHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHH-hhcccceeeehhHHHHHHHHHHHHHhhCCe
Confidence 11111000000000000 0011 356789999999999999999999999999
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCC-ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 556 GFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 556 ~~~~idG~~s~~eR~~~i~~F~~~~~-~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
.|..|+|.....+|+.+|+.||...+ .+|+|+|..|||+||||++|||+|++|+-|||+.+.||.+|++|+||+|+|+|
T Consensus 772 ~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 772 IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999999997654 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCChHHHHHHHHHHhHHHHHhhhCCChh-hhhhhchhhhhccc
Q 001912 635 YIFCAKDTTDESHWQNLNKSLRCVSSATNGKYD-ALQEIAVEGVSYLE 681 (997)
Q Consensus 635 y~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~-~~~~~~~~~~~~l~ 681 (997)
|||+++||+|++|...+..|+++...++.|... .+..+...++..||
T Consensus 852 hR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 852 HRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 999999999999999999999999999998744 56666666655554
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.3e-57 Score=558.42 Aligned_cols=475 Identities=20% Similarity=0.290 Sum_probs=340.7
Q ss_pred hhccChhhHHHHHHHHHh-cCCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCcchHHHHHHHHHHHCCCCCCc
Q 001912 197 LLDVILPFQLEGVRFGLR-RGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 197 l~~~L~pyQ~~gV~~~l~-~~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~ 272 (997)
....|+|||...+..++. ..+|+|||||||||||++|++++..+... +|+|||||++|+.||..|+.+|+..
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~l---- 224 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFNL---- 224 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhCC----
Confidence 345799999999988655 35699999999999999999999887654 4899999999999999999988752
Q ss_pred eEEEEccCCC-----CcccccCCCeEEEEehhHHHHHH---HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 273 DIHLVFGHRN-----NPVHLTRFPRVVVISYTMLHRLR---KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 273 ~i~~~~g~~~-----~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
...++.+... .........+++|+||+.+.+.. +.+....|++|||||||+++|...+. +..++.+..+..
T Consensus 225 ~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~-s~~y~~v~~La~ 303 (956)
T PRK04914 225 RFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAP-SREYQVVEQLAE 303 (956)
T ss_pred CeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCc-CHHHHHHHHHhh
Confidence 1233322210 00011124689999999998743 45667899999999999999865443 456889988888
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccc-----cccch--------hhhhhhhccHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG-----YQGQL--------FQDFSKGVRLE 411 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~ 411 (997)
+++++++|||||++|++.|+|+++++|+|+.|++.. .|....+....+.. ..+.. ....-......
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~-~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYE-AFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHH-HHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 899999999999999999999999999999999865 88876654322100 00000 00000000000
Q ss_pred ------------------H-HHHHHH----hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHH-HHHHHhhhccc
Q 001912 412 ------------------E-LNVLLK----QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA-AVGVINDSEKD 467 (997)
Q Consensus 412 ------------------e-L~~~l~----~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~-~~~~~~~~~~~ 467 (997)
+ +..++. ..+|+|+++.+|. .+|.+..+.+.+++++.-...+.. ....+.....
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~- 460 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY- 460 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC-
Confidence 1 111111 1468888888876 589998888888886543222211 1111100000
Q ss_pred cCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHH
Q 001912 468 ATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ 547 (997)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~ 547 (997)
.+ ................+|+..+.+++.. ..++|+||||++..+++.|.
T Consensus 461 ----------pe----~~~~~~~~~~~~~~~d~Ki~~L~~~L~~----------------~~~~KvLVF~~~~~t~~~L~ 510 (956)
T PRK04914 461 ----------PE----QIYQEFEDNATWWNFDPRVEWLIDFLKS----------------HRSEKVLVICAKAATALQLE 510 (956)
T ss_pred ----------HH----HHHHHHhhhhhccccCHHHHHHHHHHHh----------------cCCCeEEEEeCcHHHHHHHH
Confidence 00 0000000000001123455555555542 23789999999999999999
Q ss_pred HHHH-HcCCeEEEEeCCCCHHHHHHHHHHhccC-CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhh
Q 001912 548 EFIS-EKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR 625 (997)
Q Consensus 548 ~~L~-~~gi~~~~idG~~s~~eR~~~i~~F~~~-~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~R 625 (997)
+.|. ..|++++.|||+|+..+|+++++.|+++ +.++| |+||.+||+|+||+.|++||+||+||||..++||+||+||
T Consensus 511 ~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 511 QALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred HHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 9995 5699999999999999999999999964 35777 7888999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccccCcCccccchhhccCchHHH
Q 001912 626 RGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQ 705 (997)
Q Consensus 626 iGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (997)
+||+++|.||+++.++|+|+.|++++.+|+++++.++.+......++..+....+.... ...+.+++..+....+..++
T Consensus 590 iGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l~~~l~~~~-~~~~~~~li~~~~~~~~~l~ 668 (956)
T PRK04914 590 IGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGDELIPYLASPD-DTDGLDELIAETREQHEALK 668 (956)
T ss_pred CCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888777666665442 22334455555445555566
Q ss_pred hhhcCC
Q 001912 706 ELMKVP 711 (997)
Q Consensus 706 ~~~~~~ 711 (997)
..++.+
T Consensus 669 ~~le~g 674 (956)
T PRK04914 669 AQLEQG 674 (956)
T ss_pred HHHHHH
Confidence 655543
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-53 Score=543.64 Aligned_cols=461 Identities=26% Similarity=0.416 Sum_probs=352.8
Q ss_pred hhhhccChhhHHHHHHHHH---h-cCCCeEEEcCCCchHHHHHHHHHHHHhh-----CCcEEEEeCcchHHHHHHHHHHH
Q 001912 195 KSLLDVILPFQLEGVRFGL---R-RGGRCLIADEMGLGKTLQAIAIAACFIS-----AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 195 ~~l~~~L~pyQ~~gV~~~l---~-~~g~~ILaDemGLGKTlqaial~~~~~~-----~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
..+...|+|||.+|+.|+. . .+.++||||+||+|||+|+|+++..... .+|.|||||.+++.+|.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5666799999999999966 2 3557899999999999999999875322 36899999999999999999999
Q ss_pred CCCCCCceEEEEccCCCC----ccc---ccC-----CCeEEEEehhHHHH---HHHhhhhccccEEEeccccccccCCCC
Q 001912 266 LPFCLPADIHLVFGHRNN----PVH---LTR-----FPRVVVISYTMLHR---LRKSMIEQDWALLIVDESHHVRCSKRT 330 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~~~----~~~---~~~-----~~~VvItTy~~l~~---~~~~l~~~~~~~VIvDEaH~iKN~~~~ 330 (997)
.|.+.. +....|.... ... ... .++|+|+||+.+.. ....+....|+.+|+||||+|||.
T Consensus 413 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~--- 487 (866)
T COG0553 413 APDLRL--VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND--- 487 (866)
T ss_pred Cccccc--eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh---
Confidence 998753 4444454431 111 111 27899999999999 888899999999999999999984
Q ss_pred CcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHH-hhccCCccchhHHHHHHhhccccccccccchhhhhhhhcc
Q 001912 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN-MLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409 (997)
Q Consensus 331 ~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~-~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (997)
.+..++++..+ ++.++++|||||++|++.|||++++ |+.|+.++.....|...|..+.......+. .......
T Consensus 488 -~s~~~~~l~~~--~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~ 561 (866)
T COG0553 488 -QSSEGKALQFL--KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP---LEARELG 561 (866)
T ss_pred -hhHHHHHHHHH--hhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc---hhhHHHH
Confidence 46668888844 5788899999999999999999999 999999996666899999877643322111 1112233
Q ss_pred HHHHHHHHHhHHHHHHHhhh--hhccCCCceEEEEEEecChhHHHHHHHHHH---HHhhhccccCCCCCC---C---CC-
Q 001912 410 LEELNVLLKQTVMIRRLKQH--LLVQLPPKRRQIIRLLLKRSEIVSAKAAVG---VINDSEKDATNDKTP---K---DS- 477 (997)
Q Consensus 410 ~~eL~~~l~~~~~lRR~k~~--v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~---~~~~~~~~~~~~~~~---~---~~- 477 (997)
...++.++. +|++||+|.+ +..+||++.+.++.+.++..|...|..... ............... . ..
T Consensus 562 ~~~l~~~i~-~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 562 IELLRKLLS-PFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHH-HHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 344666664 7999999999 899999999999999999999999988776 222211110000000 0 00
Q ss_pred --Cccccchhhhcccccchhh---h-----------------------hh-hhhhhhhhhhccCccccccCccccccccC
Q 001912 478 --DEHDDSGACCRLGKISYQE---L-----------------------GI-AKLSGFREWLSIHPVIAESDGAADIDVNP 528 (997)
Q Consensus 478 --~~~~~~~~~~~l~~l~~~~---~-----------------------~~-~K~~~~~~~l~~~~~~~~~~~~~~~~~~~ 528 (997)
.........+.+..+.... . .. .|...+.+++. .....
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~-------------~~~~~ 707 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLL-------------DKLLE 707 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHH-------------HHHHh
Confidence 0000011111111111110 0 00 23333333331 01235
Q ss_pred CCC--eEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE
Q 001912 529 RSN--KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606 (997)
Q Consensus 529 ~~~--KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~ 606 (997)
.+. |+|||+|++.++++|+.+|...++.|+++||+++..+|+.++++|+++.+..||++|++|||+||||+.|++||+
T Consensus 708 ~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~ 787 (866)
T COG0553 708 EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL 787 (866)
T ss_pred hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE
Confidence 576 999999999999999999999999999999999999999999999977789999999999999999999999999
Q ss_pred ecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCC-Chhhhhhhchhhhhcc
Q 001912 607 LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNG-KYDALQEIAVEGVSYL 680 (997)
Q Consensus 607 ~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g-~~~~~~~~~~~~~~~l 680 (997)
+|+||||+.+.||++|+||+||+++|.||+++++||+||+|++.+..|..+...++++ .......+..+.+..+
T Consensus 788 ~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l 862 (866)
T COG0553 788 FDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDL 862 (866)
T ss_pred eccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 5555555555544443
No 17
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.5e-51 Score=458.42 Aligned_cols=463 Identities=21% Similarity=0.336 Sum_probs=344.3
Q ss_pred CCChhhhccChhhHHHHHHHHHh------------cCCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCcchHH
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLR------------RGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRL 256 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~------------~~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~sL~~ 256 (997)
.+-+.|...|.|||+-||+||+. .|-|||||+.||||||+|.|+++..++. ...+|+|+|-..+.
T Consensus 246 flapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQ 325 (1387)
T KOG1016|consen 246 FLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQ 325 (1387)
T ss_pred eehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHH
Confidence 46678888999999999999864 2569999999999999999999887765 34689999999999
Q ss_pred HHHHHHHHHCCCCC--------CceEEEEccCCCC-------cccccCCCeEEEEehhHHHHHH----------------
Q 001912 257 SWAEELERWLPFCL--------PADIHLVFGHRNN-------PVHLTRFPRVVVISYTMLHRLR---------------- 305 (997)
Q Consensus 257 qW~~Ei~k~~p~~~--------~~~i~~~~g~~~~-------~~~~~~~~~VvItTy~~l~~~~---------------- 305 (997)
||..||..|+|... ...|++.....+. ...|.....|+++.|++++-+.
T Consensus 326 NWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr 405 (1387)
T KOG1016|consen 326 NWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKR 405 (1387)
T ss_pred HHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccc
Confidence 99999999998521 2233333322221 1234456789999999987431
Q ss_pred ----------------------HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhH
Q 001912 306 ----------------------KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYD 363 (997)
Q Consensus 306 ----------------------~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~E 363 (997)
..|..-+.|+|||||+|+|||.. .....++..+ +.+||+.|||-|++|++.|
T Consensus 406 ~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~----A~iS~aLk~I--rtrRRiVLTGYPLQNNLlE 479 (1387)
T KOG1016|consen 406 ISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT----AEISMALKAI--RTRRRIVLTGYPLQNNLLE 479 (1387)
T ss_pred cCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch----HHHHHHHHHh--hhceeEEEeccccccchHH
Confidence 12444579999999999999843 4556677766 5889999999999999999
Q ss_pred HHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhh-ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEE
Q 001912 364 IFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG-VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII 442 (997)
Q Consensus 364 l~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~-~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i 442 (997)
+|+|++|++|+++|+.. +|...|..++........+-.|+.-. .+..-|+.++. .|+-||+...+...||.|.+.+|
T Consensus 480 YwCMVDFVRP~yLGTR~-eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~-GFVQRR~HtvLk~~LP~k~EyVi 557 (1387)
T KOG1016|consen 480 YWCMVDFVRPKYLGTRK-EFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLK-GFVQRRTHTVLKKILPEKKEYVI 557 (1387)
T ss_pred HhhhheeccccccchHH-HHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHH-HHHHhcchhhHhhhcccccceEE
Confidence 99999999999999955 99999999987766666555565544 45667888886 69999999888889999999999
Q ss_pred EEecChhHHHHHHHHHHHHhhhc-cccCCCCCCCCCCccccchhhhcccccchhh-------------------------
Q 001912 443 RLLLKRSEIVSAKAAVGVINDSE-KDATNDKTPKDSDEHDDSGACCRLGKISYQE------------------------- 496 (997)
Q Consensus 443 ~~~l~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------- 496 (997)
.+.++.-|...|..++....... ..+..... .......|.+...+..+.|..
T Consensus 558 Lvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~N--PLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~ 635 (1387)
T KOG1016|consen 558 LVRKSQIQRQLYRNFMLDAKREIAANNDAVFN--PLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQ 635 (1387)
T ss_pred EEeHHHHHHHHHHHHHHHHHHhhccccccccC--hHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccccc
Confidence 99999999999998774333211 11000000 000000000000000000000
Q ss_pred ------------------------------------------hhhhhh-----hhhhhh----hccCccccccCcccccc
Q 001912 497 ------------------------------------------LGIAKL-----SGFREW----LSIHPVIAESDGAADID 525 (997)
Q Consensus 497 ------------------------------------------~~~~K~-----~~~~~~----l~~~~~~~~~~~~~~~~ 525 (997)
....+. +.+..| +.+.|.+...-...+ .
T Consensus 636 ~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d-e 714 (1387)
T KOG1016|consen 636 QSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD-E 714 (1387)
T ss_pred CCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec-c
Confidence 000000 000000 000011100000000 1
Q ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHHHc------------------CCeEEEEeCCCCHHHHHHHHHHhccCCCce-EEE
Q 001912 526 VNPRSNKMIIFAHHLKVLDGVQEFISEK------------------GIGFVRIDGNTLPRDRQSAVHSFQLSNEVK-IAI 586 (997)
Q Consensus 526 ~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------------gi~~~~idG~~s~~eR~~~i~~F~~~~~~~-VlL 586 (997)
...-|.|+|||++....+|+|++.|.++ ...|.++||.++..+|+++|++||+...+. .|+
T Consensus 715 s~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfl 794 (1387)
T KOG1016|consen 715 STQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFL 794 (1387)
T ss_pred ccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeee
Confidence 1345899999999999999999999863 246889999999999999999999877765 889
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCC
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~ 665 (997)
+|+++|..||||.+|+.+|+||.-|||..+.||..|++|.||+|+++|||||+.+++|.+||+++-.|..+...++|..
T Consensus 795 lstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016|consen 795 LSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred ehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888765
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-43 Score=420.41 Aligned_cols=423 Identities=26% Similarity=0.348 Sum_probs=298.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC----------CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA----------GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~----------gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~ 287 (997)
|||+||+||+|||+++++++...... +-.|||||.+++.||..|+.+ .+......+.+++|+......+
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek-~~~~~~l~v~v~~gr~kd~~el 232 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEK-VTEEDKLSIYVYHGRTKDKSEL 232 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhc-cCCccceEEEEecccccccchh
Confidence 56999999999999999987754322 237999999999999999944 4444455667777722233333
Q ss_pred cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHH
Q 001912 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQ 367 (997)
Q Consensus 288 ~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~l 367 (997)
..++||||||+++.. ..+....|-.||+||||.++|.. .+.++++..+ .+.+||.|||||++|+..|+|++
T Consensus 233 -~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~----tq~~~a~~~L--~a~~RWcLtgtPiqn~~~~lysl 303 (674)
T KOG1001|consen 233 -NSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKD----TQIFKAVCQL--DAKYRWCLTGTPIQNNLDELYSL 303 (674)
T ss_pred -cCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcc----hHhhhhheee--ccceeeeecCChhhhhHHHHHHH
Confidence 367899999999985 34556899999999999999844 4567777766 58999999999999999999999
Q ss_pred HHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhh-----hhccCCCceEEEE
Q 001912 368 INMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH-----LLVQLPPKRRQII 442 (997)
Q Consensus 368 l~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~-----v~~~LP~k~~~~i 442 (997)
+.|+.-+.+..+. -|...+..+.....+ ..-...+..+++ .+|+||+|.. ....|||+...++
T Consensus 304 ~~fl~~~p~~~~~-~~~~~i~~p~~~~~~----------~~~~k~l~~~L~-~v~lrrtK~~~~~gk~i~~lppk~v~~~ 371 (674)
T KOG1001|consen 304 FKFLEIHPYCDQN-YFKLLIQDPDERNKY----------KEGVKTLQGILK-KVMLRRTKEMEVDGKPILELPPKTVFVT 371 (674)
T ss_pred HHHhhcCCchhhH-HHHHHhcChhhhhhH----------HHHHHHHHHHHH-HHHhcccccccccCccccccCcceeEee
Confidence 9999877666543 344444333311100 122344555554 6999999963 2457999999999
Q ss_pred EEecChhHHHHHHHHHHHHhhhccc-------------------------cCC--------CCCCCCCCcc---------
Q 001912 443 RLLLKRSEIVSAKAAVGVINDSEKD-------------------------ATN--------DKTPKDSDEH--------- 480 (997)
Q Consensus 443 ~~~l~~~q~~~~~~~~~~~~~~~~~-------------------------~~~--------~~~~~~~~~~--------- 480 (997)
.+.+..++...|.++.......... .+. ..........
T Consensus 372 ~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l 451 (674)
T KOG1001|consen 372 EVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDL 451 (674)
T ss_pred eccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHH
Confidence 9999999888877654332221110 000 0000000000
Q ss_pred ---ccchhhhccccc---------ch-------hhhhhhhhhhhhhhhccCccccc------cCc--------------c
Q 001912 481 ---DDSGACCRLGKI---------SY-------QELGIAKLSGFREWLSIHPVIAE------SDG--------------A 521 (997)
Q Consensus 481 ---~~~~~~~~l~~l---------~~-------~~~~~~K~~~~~~~l~~~~~~~~------~~~--------------~ 521 (997)
..+..+...... .. +.....+.+.....+....++.. ... +
T Consensus 452 ~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l 531 (674)
T KOG1001|consen 452 SVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKIL 531 (674)
T ss_pred hhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHH
Confidence 000000000000 00 00000011111111110000000 000 0
Q ss_pred ccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccc
Q 001912 522 ADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA 601 (997)
Q Consensus 522 ~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A 601 (997)
........ .|+|||+|++.+++.++..|...++.+.+++|.++...|.+.+..|..++.+.|+++|.+|||.||||+.|
T Consensus 532 ~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a 610 (674)
T KOG1001|consen 532 QAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAA 610 (674)
T ss_pred hhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhh
Confidence 00111223 49999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhC
Q 001912 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATN 663 (997)
Q Consensus 602 ~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~ 663 (997)
++|+..||||||..+.||++||||+||+++|+|++++..+|+||+|...+++|......+++
T Consensus 611 ~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 611 SHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred hHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998877664
No 19
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-37 Score=367.02 Aligned_cols=343 Identities=19% Similarity=0.242 Sum_probs=244.4
Q ss_pred hccChhhHHHHHHHHHhcC--CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 198 LDVILPFQLEGVRFGLRRG--GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~--g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
...|||||.+++.+++..| +++||.++||+|||+++++++... ..++|||||+ .++.||.+||.+|+.. ....+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--~k~tLILvps~~Lv~QW~~ef~~~~~l-~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--KKSCLVLCTSAVSVEQWKQQFKMWSTI-DDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--CCCEEEEeCcHHHHHHHHHHHHHhcCC-CCceE
Confidence 3589999999999988654 478999999999999999988765 4789999998 5699999999999743 23344
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHH----------HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRL----------RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~----------~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
..+.+.... .......|+|+||+++... .+.+....|++||+||||++. +..++.+....
T Consensus 330 ~~~tg~~k~--~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-------A~~fr~il~~l- 399 (732)
T TIGR00603 330 CRFTSDAKE--RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-------AAMFRRVLTIV- 399 (732)
T ss_pred EEEecCccc--ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-------HHHHHHHHHhc-
Confidence 445443322 1223468999999998642 234555689999999999994 23355444433
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHh-hccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINM-LWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~-l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
.++++|+|||||..++- .+..+.+ +.|.++.... .+ ++.
T Consensus 400 ~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye~~~------------------------------~e---Li~----- 439 (732)
T TIGR00603 400 QAHCKLGLTATLVREDD--KITDLNFLIGPKLYEANW------------------------------ME---LQK----- 439 (732)
T ss_pred CcCcEEEEeecCcccCC--chhhhhhhcCCeeeecCH------------------------------HH---HHh-----
Confidence 57889999999997652 2332332 2333322111 00 111
Q ss_pred HHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhh
Q 001912 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS 503 (997)
Q Consensus 424 RR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~ 503 (997)
...|.+.....|+|+|+++....|...-...+ ... ......|+.
T Consensus 440 -------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k----------------------------~~l-~~~np~K~~ 483 (732)
T TIGR00603 440 -------KGFIANVQCAEVWCPMTPEFYREYLRENSRKR----------------------------MLL-YVMNPNKFR 483 (732)
T ss_pred -------CCccccceEEEEEecCCHHHHHHHHHhcchhh----------------------------hHH-hhhChHHHH
Confidence 13456666678899999876655532110000 000 001223444
Q ss_pred hhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCce
Q 001912 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583 (997)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~ 583 (997)
.+...+..| ...++|+||||+++..++.+.+.| +. ..|+|+|+..+|.+++++|+..+.+.
T Consensus 484 ~~~~Li~~h--------------e~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 484 ACQFLIRFH--------------EQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred HHHHHHHHH--------------hhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 444444322 136899999999999888887776 33 45999999999999999999666788
Q ss_pred EEEEeccccccccCcccccEEEEecCCC-CccHHhhHHHhhhhcCCCC-----eEEEEEEeeCCChHHHHHH
Q 001912 584 IAIIGITAGGVGLDFSSAQNVVFLELPQ-SPSLMLQAEDRAHRRGQTS-----AVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 584 VlLlSt~agg~GLNL~~A~~VI~~D~~w-np~~~~Qa~gRa~RiGQ~k-----~V~Vy~Li~~gTiEe~i~~ 649 (997)
+ |+++++|++|||++.|++||++++++ |+..+.||.||+.|.+..+ +.++|.|++++|.|+..-.
T Consensus 545 v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 545 T-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred E-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 8 55569999999999999999999986 9999999999999999765 3789999999999987643
No 20
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=351.96 Aligned_cols=366 Identities=25% Similarity=0.399 Sum_probs=264.9
Q ss_pred CCChhhh---ccChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcchHHHHHHH
Q 001912 192 KLPKSLL---DVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAILRLSWAEE 261 (997)
Q Consensus 192 ~lp~~l~---~~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~sL~~qW~~E 261 (997)
.+|..+. ..|.+||.+|++|+. ..+..+|+|||||+|||+|++.+...+.. .+|.|+++|.+.+.+|.+|
T Consensus 284 ~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e 363 (696)
T KOG0383|consen 284 DQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWERE 363 (696)
T ss_pred cCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCc
Confidence 5666666 699999999999974 56778999999999999999987765543 5689999999999999999
Q ss_pred HHHHCCCCCCceEEEEccCCCCcc---------------------c----ccCCCeEEEEehhHHHHHHHhhhhccccEE
Q 001912 262 LERWLPFCLPADIHLVFGHRNNPV---------------------H----LTRFPRVVVISYTMLHRLRKSMIEQDWALL 316 (997)
Q Consensus 262 i~k~~p~~~~~~i~~~~g~~~~~~---------------------~----~~~~~~VvItTy~~l~~~~~~l~~~~~~~V 316 (997)
+..|+|.... ....|..+.+. . -...+.+..++|++.......+..+.|.++
T Consensus 364 ~~~wap~~~v---v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~l 440 (696)
T KOG0383|consen 364 FELWAPSFYV---VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLL 440 (696)
T ss_pred hhccCCCccc---ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhccee
Confidence 9999997642 22233222110 0 011357899999999888888889999999
Q ss_pred EeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhcccccccc
Q 001912 317 IVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGY 396 (997)
Q Consensus 317 IvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~ 396 (997)
|+||+|++||.. ++.++.+... ...++++|||||.+|++.|||++|+|+.|+.|.+.. .|.+.|
T Consensus 441 ivde~~rlkn~~----s~~f~~l~~~--~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~-~f~e~~--------- 504 (696)
T KOG0383|consen 441 IVDEAHRLKNKQ----SKRFRVLTAY--PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLE-WFLEEF--------- 504 (696)
T ss_pred Eeechhhcccch----hhhhhhcccc--ccchhhhccCCcchhhhHHhhhcccccCcccccchh-hhhhhc---------
Confidence 999999999854 3344444433 467889999999999999999999999999998743 454333
Q ss_pred ccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCC
Q 001912 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476 (997)
Q Consensus 397 ~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (997)
.++.......+++.++. +.|+||+|.+|+..+|+|.+.++++.+++-|...|+.++..--..... .......
T Consensus 505 -----~d~~~~~~~~~l~~l~~-p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--~~~~~s~ 576 (696)
T KOG0383|consen 505 -----HDISCEEQIKKLHLLLC-PHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--GVHQYSL 576 (696)
T ss_pred -----chhhHHHHHHhhccccC-chhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--cchhHHH
Confidence 34556667788898886 799999999999999999999999999999999998754221110000 0000000
Q ss_pred CCccccchhhhcccccc-----------hhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHH
Q 001912 477 SDEHDDSGACCRLGKIS-----------YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDG 545 (997)
Q Consensus 477 ~~~~~~~~~~~~l~~l~-----------~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~ 545 (997)
.+......+++.+..+. +......|..+....+.. .+ -.+.+.|+||+||+|++.++|+
T Consensus 577 ~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~--~~--------~~l~~~ghrvl~~~q~~~~ldl 646 (696)
T KOG0383|consen 577 LNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLK--ML--------KKLKSSGHRVLIFSQMIHMLDL 646 (696)
T ss_pred HHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHH--HH--------HHHHhcchhhHHHHHHHHHHHH
Confidence 00001111112111111 111111111111111110 00 0245789999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC-CCceEEEEeccccccc
Q 001912 546 VQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS-NEVKIAIIGITAGGVG 595 (997)
Q Consensus 546 L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~-~~~~VlLlSt~agg~G 595 (997)
|++++...+ .|.+|||..+..+|+.++++||.. .+-.+||+||+|||.|
T Consensus 647 led~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 647 LEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999 999999999999999999999954 4567999999999998
No 21
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.8e-32 Score=337.09 Aligned_cols=423 Identities=18% Similarity=0.227 Sum_probs=260.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
++|+||.+.+..++.+ ++|++++||+|||+++++++..++. .+++|||||+ .|+.||.+++.+++... ...+..
T Consensus 15 ~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~ 91 (773)
T PRK13766 15 EARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVV 91 (773)
T ss_pred CccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEE
Confidence 6799999999988875 6799999999999999988776553 5789999999 89999999999987532 223444
Q ss_pred EccCCCC--cccccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---hcCcE
Q 001912 277 VFGHRNN--PVHLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRI 349 (997)
Q Consensus 277 ~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~~~~~ 349 (997)
+.|.... +.......+|+|+|++.+..+.. .+....|++|||||||++.+.. .+..+..... +.+++
T Consensus 92 ~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~------~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 92 FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNY------AYVYIAERYHEDAKNPLV 165 (773)
T ss_pred EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccc------cHHHHHHHHHhcCCCCEE
Confidence 5543322 22233467899999999977542 2334579999999999997422 1222222222 34569
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCcc---chhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLG---KAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~---~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
++|||||..+ ...+..++..|...... ....+. ..|....... +..+.-.....++...+. .++.+++
T Consensus 166 l~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v-~~~~~~~~v~------~~~v~l~~~~~~i~~~l~-~~~~~~l 236 (773)
T PRK13766 166 LGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDV-KPYVHKVKIE------WVRVELPEELKEIRDLLN-EALKDRL 236 (773)
T ss_pred EEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhH-HhhhccceeE------EEEeCCcHHHHHHHHHHH-HHHHHHH
Confidence 9999999865 55666666655322211 001111 1121111100 011112234556666665 3666666
Q ss_pred hhhhhccC-CCceEEEEEEecChhHHHHHHHHH-HHHhhhccccCCCC--C------------CCCCCccccchhhhccc
Q 001912 427 KQHLLVQL-PPKRRQIIRLLLKRSEIVSAKAAV-GVINDSEKDATNDK--T------------PKDSDEHDDSGACCRLG 490 (997)
Q Consensus 427 k~~v~~~L-P~k~~~~i~~~l~~~q~~~~~~~~-~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~l~ 490 (997)
+....... ++... .++..+.......+ ..+........... . ............+..+.
T Consensus 237 ~~l~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 237 KKLKELGVIVSISP-----DVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHCCCcccCCC-----CcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 66433222 12111 12222222211111 11110000000000 0 00000000000000000
Q ss_pred ----------------c----------cchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHH
Q 001912 491 ----------------K----------ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLD 544 (997)
Q Consensus 491 ----------------~----------l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld 544 (997)
. +.......+|...+.+++... .....+.|+||||++..+++
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~------------~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 312 EEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQ------------LGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred hhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHH------------HhcCCCCeEEEEeCcHHHHH
Confidence 0 000000112333333332210 01246889999999999999
Q ss_pred HHHHHHHHcCCeEEEEeCC--------CCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHH
Q 001912 545 GVQEFISEKGIGFVRIDGN--------TLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLM 616 (997)
Q Consensus 545 ~L~~~L~~~gi~~~~idG~--------~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~ 616 (997)
.|.++|...|+.+..++|. ++..+|.+++++|+ .+++.| |++|.++++|+|++.+++||+||++||+..+
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~g~~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR-AGEFNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHH-cCCCCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 9999999999999999997 88899999999999 567888 7888999999999999999999999999999
Q ss_pred hhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhh
Q 001912 617 LQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSAT 662 (997)
Q Consensus 617 ~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l 662 (997)
.|+.||++|.|+ +.||.|++++|+||.+|....+|...+...+
T Consensus 458 iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~~~l 500 (773)
T PRK13766 458 IQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMKEEL 500 (773)
T ss_pred HHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHHHHH
Confidence 998888888765 6789999999999999877666665554444
No 22
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.4e-31 Score=314.24 Aligned_cols=436 Identities=14% Similarity=0.165 Sum_probs=275.0
Q ss_pred eeecccccCcCCcchhHHHHHHHHhhhccCCCceeecCCCCeeeEEecCChHHHHHHHhccCCceeeccCcccHHHHHhc
Q 001912 85 SVTPLAIEGFVYPGEEECLRRLGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGIPWVTLNVVEKL 164 (997)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~q~~~~~~~~~f~l~dy~~l~~~Lk~l~~v~~e~ip~~~~~~~~~~ 164 (997)
.|++.+.+++...++..++++|.+.+++-.|..+.....+...|...+.-|+ .-+.+|-+....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~f~np~~~~~~~~r~~~~~~~i~~~~------------~~~~~prG~~~~~~~~ 72 (501)
T PHA02558 5 KIHFKNESHVRIECEPSIFYELRDYFSFEVPGYKFNPKFKYGGWDGKIRLLD------------YNGLLPYGLVGQLKKF 72 (501)
T ss_pred EEEEeeeeEEEEEecchHHHHHHhhcceeCCCceecccccCCCCCceEEEec------------cCCCcccchHHHHHHH
Confidence 4556667777777888999999999999988888776556566653332221 1125566655544433
Q ss_pred cccccCCCCCCC---CCCCCChhhHhhhhcCCCh--hh-hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH
Q 001912 165 SHSIDTGRWNPC---RPEHLSDEVVDEMIGKLPK--SL-LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA 238 (997)
Q Consensus 165 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~--~l-~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~ 238 (997)
-...+..-+-.. ....++...++.++..... +. ...|+|||.++|..++. +.++|+..+||+|||+++++++.
T Consensus 73 ~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~-~~~~il~apTGsGKT~i~~~l~~ 151 (501)
T PHA02558 73 AKNRGYSIWVDPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLK-NNRRLLNLPTSAGKSLIQYLLSR 151 (501)
T ss_pred HHhcCCeEecCcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHh-cCceEEEeCCCCCHHHHHHHHHH
Confidence 222221111000 0112333444433322111 11 25899999999988876 55679999999999999887766
Q ss_pred HHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE-EEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhcccc
Q 001912 239 CFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADI-HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWA 314 (997)
Q Consensus 239 ~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i-~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~ 314 (997)
.+.. .+++|||||+ .|+.||.+++.+|..... ..+ .+..|.... ...+|+|+|++.+.+....+. .+++
T Consensus 152 ~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~-~~~~~i~~g~~~~-----~~~~I~VaT~qsl~~~~~~~~-~~~~ 224 (501)
T PHA02558 152 YYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPR-EAMHKIYSGTAKD-----TDAPIVVSTWQSAVKQPKEWF-DQFG 224 (501)
T ss_pred HHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccc-cceeEEecCcccC-----CCCCEEEeeHHHHhhchhhhc-cccC
Confidence 5443 3389999999 999999999999864321 122 233333221 246899999999976543322 4799
Q ss_pred EEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhcccccc
Q 001912 315 LLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQ 394 (997)
Q Consensus 315 ~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~ 394 (997)
+||+||||++.. ..+..+.....+++++++|||||....... ..+.. .||+..+.
T Consensus 225 ~iIvDEaH~~~~-------~~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~-----~fG~i~~~------------ 279 (501)
T PHA02558 225 MVIVDECHLFTG-------KSLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVG-----LFGDIFKP------------ 279 (501)
T ss_pred EEEEEchhcccc-------hhHHHHHHhhhccceEEEEeccCCCccccH-HHHHH-----hhCCceEE------------
Confidence 999999999952 234555554446788999999996433211 11111 12211100
Q ss_pred ccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHH-----HHHHHHHHhhhccccC
Q 001912 395 GYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVS-----AKAAVGVINDSEKDAT 469 (997)
Q Consensus 395 ~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~-----~~~~~~~~~~~~~~~~ 469 (997)
....+ ++.. ..+.+.....+.+..+...... |...+..+.
T Consensus 280 -------------v~~~~---li~~------------g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~------- 324 (501)
T PHA02558 280 -------------VTTSQ---LMEE------------GQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT------- 324 (501)
T ss_pred -------------ecHHH---HHhC------------CCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh-------
Confidence 00000 0000 1122222222233332221110 000000000
Q ss_pred CCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHH
Q 001912 470 NDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEF 549 (997)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~ 549 (997)
. ...+...+.+.+.. ....+.+++||+..+++++.|.+.
T Consensus 325 ------------------------~---~~~Rn~~I~~~~~~--------------~~~~~~~~lV~~~~~~h~~~L~~~ 363 (501)
T PHA02558 325 ------------------------S---HTKRNKWIANLALK--------------LAKKGENTFVMFKYVEHGKPLYEM 363 (501)
T ss_pred ------------------------c---cHHHHHHHHHHHHH--------------HHhcCCCEEEEEEEHHHHHHHHHH
Confidence 0 00011111111111 113467899999999999999999
Q ss_pred HHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCC
Q 001912 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629 (997)
Q Consensus 550 L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~ 629 (997)
|...|+++..+||+++.++|..+++.|+ +++..|+|+|++..|+|+|++..++||+++|+.+...+.|++||++|.|..
T Consensus 364 L~~~g~~v~~i~G~~~~~eR~~i~~~~~-~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 364 LKKVYDKVYYVSGEVDTEDRNEMKKIAE-GGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred HHHcCCCEEEEeCCCCHHHHHHHHHHHh-CCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 9999999999999999999999999998 677778777779999999999999999999999999999999999999977
Q ss_pred C-eEEEEEEeeCCC
Q 001912 630 S-AVNIYIFCAKDT 642 (997)
Q Consensus 630 k-~V~Vy~Li~~gT 642 (997)
| .+.||.++..-.
T Consensus 443 K~~~~i~D~vD~~~ 456 (501)
T PHA02558 443 KSIATVWDIIDDLS 456 (501)
T ss_pred CceEEEEEeecccc
Confidence 6 689999887543
No 23
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.2e-32 Score=304.90 Aligned_cols=240 Identities=28% Similarity=0.428 Sum_probs=184.9
Q ss_pred hHHHHHHHHHhcC------------CCeEEEcCCCchHHHHHHHHHHHHhhCC------cEEEEeCcchHHHHHHHHHHH
Q 001912 204 FQLEGVRFGLRRG------------GRCLIADEMGLGKTLQAIAIAACFISAG------SILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 204 yQ~~gV~~~l~~~------------g~~ILaDemGLGKTlqaial~~~~~~~g------p~LIV~P~sL~~qW~~Ei~k~ 265 (997)
||++||.||+.+. +|+|||||||+|||+++++++..+...+ ++|||||++++.||..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999996553 6899999999999999999998765532 499999999999999999999
Q ss_pred CCCCCCceEEEEccCC---CCcccccCCCeEEEEehhHHH-----HHHHhhhhccccEEEeccccccccCCCCCcHHHHH
Q 001912 266 LPFCLPADIHLVFGHR---NNPVHLTRFPRVVVISYTMLH-----RLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVK 337 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~---~~~~~~~~~~~VvItTy~~l~-----~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~ 337 (997)
++... ..+.++.+.. ..........+|+|+||+.+. .....+...+|++||+||+|.+|| ..+..++
T Consensus 81 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~----~~s~~~~ 155 (299)
T PF00176_consen 81 FDPDS-LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN----KDSKRYK 155 (299)
T ss_dssp SGT-T-S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT----TTSHHHH
T ss_pred ccccc-ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc----ccccccc
Confidence 95321 2455555444 112223346789999999999 566677778899999999999986 4466788
Q ss_pred HHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHH
Q 001912 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417 (997)
Q Consensus 338 al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l 417 (997)
++..+ .++++|+|||||+.|++.|+|++++||.|+.++... .|.+.|... ..........+|..++
T Consensus 156 ~l~~l--~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~-~f~~~~~~~-----------~~~~~~~~~~~L~~~l 221 (299)
T PF00176_consen 156 ALRKL--RARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRR-SFKKWFYRP-----------DKENSYENIERLRELL 221 (299)
T ss_dssp HHHCC--CECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHH-HHHHHTHHH-----------HHTHHHHHHHHHHHHH
T ss_pred ccccc--ccceEEeeccccccccccccccchheeeccccccch-hhhhhhhhh-----------cccccccccccccccc
Confidence 87775 489999999999999999999999999999988644 777766443 1122344567888888
Q ss_pred HhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhh
Q 001912 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVIND 463 (997)
Q Consensus 418 ~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~ 463 (997)
. .+++||++.++...+|++.+.++.++|++.|...|..+......
T Consensus 222 ~-~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~ 266 (299)
T PF00176_consen 222 S-EFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARE 266 (299)
T ss_dssp C-CCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGG
T ss_pred c-hhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 6 59999999999889999999999999999999999987766654
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.7e-31 Score=289.97 Aligned_cols=426 Identities=20% Similarity=0.220 Sum_probs=263.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
+.|.||..-+..++.+ ++|++.++|||||++|+.++..++. .|++|+++|+ .|+.|.+.-+.+.+.- ....+..
T Consensus 15 e~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ 91 (542)
T COG1111 15 EPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAA 91 (542)
T ss_pred cHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCC-Chhheee
Confidence 5689999999998875 6799999999999999999886553 3469999999 8999999999998753 3445556
Q ss_pred EccCCC--CcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHH-HHh--hcCcE
Q 001912 277 VFGHRN--NPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD-VAA--KVKRI 349 (997)
Q Consensus 277 ~~g~~~--~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~-l~~--~~~~~ 349 (997)
+.|.-. .+...+...+|+|+|++++.++... +....+.++|+||||+.-. +. .|-.+.. ... +.+++
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG-----ny-AYv~Va~~y~~~~k~~~i 165 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG-----NY-AYVFVAKEYLRSAKNPLI 165 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccC-----cc-hHHHHHHHHHHhccCceE
Confidence 666433 2344556789999999999987543 4456899999999999741 12 2333332 222 34569
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCc--cchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLL--GKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~--~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k 427 (997)
++|||||- ++.+.+-..++-|.-... .+....-...|.....+.- -.+.-.....++..+|.. .+-.|++
T Consensus 166 lgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~------ikV~lp~e~~~ir~~l~~-~l~~~Lk 237 (542)
T COG1111 166 LGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEW------IKVDLPEEIKEIRDLLRD-ALKPRLK 237 (542)
T ss_pred EEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEE------EeccCcHHHHHHHHHHHH-HHHHHHH
Confidence 99999996 455556566655432211 0001111223332221110 112222334444444442 2222333
Q ss_pred hhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccc-----------------------------cCCCCCCCCCC
Q 001912 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKD-----------------------------ATNDKTPKDSD 478 (997)
Q Consensus 428 ~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 478 (997)
.- .++. ......+++..+...... .......... ..........+
T Consensus 238 ~L--~~~g---~~~~~~~~~~kdl~~~~~-~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e 311 (542)
T COG1111 238 PL--KELG---VIESSSPVSKKDLLELRQ-IRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEE 311 (542)
T ss_pred HH--HHcC---ceeccCcccHhHHHHHHH-HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 21 2221 111111112221111110 0000000000 00000000000
Q ss_pred cccc--chhhhc-------------ccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHH
Q 001912 479 EHDD--SGACCR-------------LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVL 543 (997)
Q Consensus 479 ~~~~--~~~~~~-------------l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~l 543 (997)
+... ...... +..+.....+.+|+..+.+.+..+. ....+.++|||++|++++
T Consensus 312 ~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~------------~k~~~~RvIVFT~yRdTa 379 (542)
T COG1111 312 EATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQL------------EKNGDSRVIVFTEYRDTA 379 (542)
T ss_pred HhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHH------------hcCCCceEEEEehhHhHH
Confidence 0000 000000 0000111122233333333332211 135678999999999999
Q ss_pred HHHHHHHHHcCCeEE-EEeC--------CCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCcc
Q 001912 544 DGVQEFISEKGIGFV-RIDG--------NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS 614 (997)
Q Consensus 544 d~L~~~L~~~gi~~~-~idG--------~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~ 614 (997)
+.|.++|...|+... ++-| +|+..+..+++++|+ .|+++| |++|.+|.+|||++..|.||||||.-+|.
T Consensus 380 e~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr-~Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeI 457 (542)
T COG1111 380 EEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR-KGEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEI 457 (542)
T ss_pred HHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh-cCCceE-EEEcccccccCCCCcccEEEEecCCcHHH
Confidence 999999999988875 5544 499999999999999 889999 99999999999999999999999999999
Q ss_pred HHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCC
Q 001912 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665 (997)
Q Consensus 615 ~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~ 665 (997)
..+||.||.+| ++.-.||.|+++||-||.-|....+|...+...+.+-
T Consensus 458 R~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~~ 505 (542)
T COG1111 458 RSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRGL 505 (542)
T ss_pred HHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 4778899999999999999999888887776655443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.1e-28 Score=284.89 Aligned_cols=364 Identities=21% Similarity=0.271 Sum_probs=249.9
Q ss_pred hhhhccChhhHHHHHHHHHhc---CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 195 KSLLDVILPFQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 195 ~~l~~~L~pyQ~~gV~~~l~~---~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
......|||||.+++.-+... ++++++..++|.|||+.++.++...... +|||||+ .|+.||.+.+.+++...
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~--~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS--TLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC--EEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 344558999999999877664 7789999999999999999999876544 9999999 89999998898887642
Q ss_pred CceEEEEccCCCCcccccCCCeEEEEehhHHHHH--HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL--RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 271 ~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
..+..+.+....... ..|+|+||+++.+. ...+...+|++||+||+|++- +..++.+..... ..+
T Consensus 108 -~~~g~~~~~~~~~~~----~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-------a~~~~~~~~~~~-~~~ 174 (442)
T COG1061 108 -DEIGIYGGGEKELEP----AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-------APSYRRILELLS-AAY 174 (442)
T ss_pred -cccceecCceeccCC----CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC-------cHHHHHHHHhhh-ccc
Confidence 233344443333211 46999999999885 344555589999999999984 233555555553 444
Q ss_pred -EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHh
Q 001912 349 -IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427 (997)
Q Consensus 349 -~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k 427 (997)
+++|||||...+...+..+..++.|-.+... .+
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~----------------------------------------------~~ 208 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGPIVYEVS----------------------------------------------LK 208 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcCCeEeecC----------------------------------------------HH
Confidence 9999999985543333333333322211110 00
Q ss_pred hhh-hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 428 QHL-LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 428 ~~v-~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
+.+ ...|.|.....+.+.++......|................ . ... ... ... ......+...+.
T Consensus 209 ~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~-~~~--~~~--~~~~~~~~~~~~ 274 (442)
T COG1061 209 ELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-------L--RAE-NEA--RRI--AIASERKIAAVR 274 (442)
T ss_pred HHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-------h--hHH-HHH--HHH--hhccHHHHHHHH
Confidence 111 1457777888888878777776665433222211000000 0 000 000 000 000111222222
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
..+..+ ..+.+++||+.+...++.+...+...|+ +..++|.++..+|.++++.|+. ++..+ |
T Consensus 275 ~~~~~~---------------~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~-g~~~~-l 336 (442)
T COG1061 275 GLLLKH---------------ARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT-GGIKV-L 336 (442)
T ss_pred HHHHHh---------------cCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc-CCCCE-E
Confidence 222211 1578999999999999999999998888 8899999999999999999994 44666 9
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhc-CCCCe--EEEEEEeeCCChHHHHHHHHH
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR-GQTSA--VNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~Ri-GQ~k~--V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
++++++.+|+|++.|+++|++.+.-++..+.|++||+.|. ..+.. +..|-++..++.+..+.....
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999999999999999999999999999994 44443 677888888888776654433
No 26
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.95 E-value=6.8e-28 Score=287.76 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=114.7
Q ss_pred cccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE
Q 001912 525 DVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 525 ~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
.......|||||+++...+|.++..+...++...+..++ ++-...+..|.+ +.||++-+..++-|+||..|.||
T Consensus 1216 K~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hv 1289 (1394)
T KOG0298|consen 1216 KFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHV 1289 (1394)
T ss_pred hccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhh
Confidence 345667899999999999999999999999988765553 556677888873 99999999999999999999999
Q ss_pred EEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 605 I~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
++.+|--||+.+.||+||+|||||++++.||+++..+|+||.|+.....|-+.+.
T Consensus 1290 fl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1290 FLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred heeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 9999999999999999999999999999999999999999999987766655443
No 27
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=8e-25 Score=255.72 Aligned_cols=416 Identities=17% Similarity=0.215 Sum_probs=243.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
.||+||.+-++-++ |.++|+|.+||+|||.+|+-++..+.+ .+++++.+|+ .|+.|....+..++-. . .+.
T Consensus 62 ~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-~--~~T 136 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP-Y--SVT 136 (746)
T ss_pred cccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc-c--cce
Confidence 79999999999999 788999999999999999999988765 5679999999 6888888777776533 1 222
Q ss_pred EEcc---CCCCcccccCCCeEEEEehhHHHHHHHhhhh---ccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 276 LVFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIE---QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 276 ~~~g---~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~---~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
...+ ....+..+....+|+|.|.+.+.++...-.. ..|.++|+||||+..-. .......+.++.+.....++
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn--~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKN--HPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccc--ccHHHHHHHHHHhhhccccE
Confidence 2222 2333445566789999999999987655333 35999999999996421 13333344555554445589
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~ 429 (997)
|+|||||- ++.....+.+.-|.-.+--.........|..........-.. ..........+..++. ++| +++...
T Consensus 215 LgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~--~~~~~~~~~~f~~~i~-p~l-~~l~~~ 289 (746)
T KOG0354|consen 215 LGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDL--SLCERDIEDPFGMIIE-PLL-QQLQEE 289 (746)
T ss_pred EEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcH--HHhhhhhhhhHHHHHH-HHH-HHHHhc
Confidence 99999998 667777666665544321111111233333222211111110 0111122233444443 332 233211
Q ss_pred hhccCCCce------EE-EEEEe--------------cChhHHHHHHHHHHHHhhhccccCCCC-CCCCCCcccc-----
Q 001912 430 LLVQLPPKR------RQ-IIRLL--------------LKRSEIVSAKAAVGVINDSEKDATNDK-TPKDSDEHDD----- 482 (997)
Q Consensus 430 v~~~LP~k~------~~-~i~~~--------------l~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 482 (997)
.|.+-. ++ ++..+ +.......|...+-...........+. .....+....
T Consensus 290 ---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~ 366 (746)
T KOG0354|consen 290 ---GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKL 366 (746)
T ss_pred ---CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHH
Confidence 111110 00 00000 001111111000000000000000000 0000000000
Q ss_pred ---------chhhh-cccccc-hhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHH
Q 001912 483 ---------SGACC-RLGKIS-YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS 551 (997)
Q Consensus 483 ---------~~~~~-~l~~l~-~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~ 551 (997)
....+ .+..+. ....+.+|++.+.+++..+.. ..+..++|||+.++..++.|..+|.
T Consensus 367 ~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~------------~~~dsR~IIFve~R~sa~~l~~~l~ 434 (746)
T KOG0354|consen 367 ELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE------------QNPDSRTIIFVETRESALALKKWLL 434 (746)
T ss_pred HhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh------------cCCCccEEEEEehHHHHHHHHHHHH
Confidence 00000 000010 111345666666666655432 3568899999999999999999998
Q ss_pred H---cCCeEEEEeC--------CCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHH
Q 001912 552 E---KGIGFVRIDG--------NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAE 620 (997)
Q Consensus 552 ~---~gi~~~~idG--------~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~ 620 (997)
. .|++...+-| +|+..+.++.++.|+ +|+++| |++|.+|.+|||+..+|.||.||..-||..+.||.
T Consensus 435 ~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr-~G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrr 512 (746)
T KOG0354|consen 435 QLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR-DGEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRR 512 (746)
T ss_pred hhhhcccccceeeeccccccccccCHHHHHHHHHHHh-CCCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHh
Confidence 3 2555555544 488889999999999 799999 89999999999999999999999999999999999
Q ss_pred HhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 621 DRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 621 gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
|| +|.-+ -.++.|.+ ..++.-|++
T Consensus 513 GR-gRa~n---s~~vll~t--~~~~~~~E~ 536 (746)
T KOG0354|consen 513 GR-GRARN---SKCVLLTT--GSEVIEFER 536 (746)
T ss_pred cc-ccccC---CeEEEEEc--chhHHHHHH
Confidence 99 77444 34444444 455555544
No 28
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.2e-24 Score=260.12 Aligned_cols=320 Identities=18% Similarity=0.226 Sum_probs=210.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhh-------CCc-EEEEeCc-chHHHHHHHHHHHCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFIS-------AGS-ILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~-------~gp-~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
..+.|+|.+++..++. |..+|+..++|+|||+..+.-+ ..... .+| +|||||+ .|+.|+.+++.+|...
T Consensus 151 ~~pt~iQ~~aip~~l~-G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS-GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 4789999999988776 6689999999999999876432 22221 233 7999999 8999999999999765
Q ss_pred CCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 269 CLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
.......++.+.... ...+....+|+|+|++.|...... +.-.++++||+||||++-... .......+.....
T Consensus 230 ~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g---f~~~i~~il~~~~ 306 (545)
T PTZ00110 230 SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG---FEPQIRKIVSQIR 306 (545)
T ss_pred cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc---hHHHHHHHHHhCC
Confidence 433333333332211 122344678999999988765432 222468899999999986422 1222344444443
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lR 424 (997)
...+.+++|||.- .++..+.. .++......-..+.
T Consensus 307 ~~~q~l~~SAT~p----~~v~~l~~----------------~l~~~~~v~i~vg~------------------------- 341 (545)
T PTZ00110 307 PDRQTLMWSATWP----KEVQSLAR----------------DLCKEEPVHVNVGS------------------------- 341 (545)
T ss_pred CCCeEEEEEeCCC----HHHHHHHH----------------HHhccCCEEEEECC-------------------------
Confidence 4556799999952 22211111 11100000000000
Q ss_pred HHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhh
Q 001912 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504 (997)
Q Consensus 425 R~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~ 504 (997)
+.........+.+.+. .. ..|...
T Consensus 342 -----~~l~~~~~i~q~~~~~-~~--------------------------------------------------~~k~~~ 365 (545)
T PTZ00110 342 -----LDLTACHNIKQEVFVV-EE--------------------------------------------------HEKRGK 365 (545)
T ss_pred -----CccccCCCeeEEEEEE-ec--------------------------------------------------hhHHHH
Confidence 0000000111111110 00 001111
Q ss_pred hhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceE
Q 001912 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584 (997)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~V 584 (997)
+.+++.. ....+.++||||+.+..++.|...|...|+.+..+||+++.++|..+++.|+ .+.+.|
T Consensus 366 L~~ll~~--------------~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~-~G~~~I 430 (545)
T PTZ00110 366 LKMLLQR--------------IMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK-TGKSPI 430 (545)
T ss_pred HHHHHHH--------------hcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh-cCCCcE
Confidence 1122211 1124679999999999999999999999999999999999999999999999 677888
Q ss_pred EEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 585 lLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|++|.++++|||++++++||+||+|+++..|.|++||++|.|.+-. +|.|++.+
T Consensus 431 -LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 431 -MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred -EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 8999999999999999999999999999999999999999997644 34455554
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=3.5e-24 Score=252.21 Aligned_cols=326 Identities=18% Similarity=0.223 Sum_probs=212.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC----------CcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA----------GSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~----------gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
..+.|+|.+++..++. +..+|+..++|+|||+..+..+...+.. -.+|||||+ .|..||.+++..+..
T Consensus 22 ~~pt~iQ~~ai~~il~-g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~ 100 (456)
T PRK10590 22 REPTPIQQQAIPAVLE-GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK 100 (456)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4789999999998776 6789999999999999987654433211 148999999 899999999999876
Q ss_pred CCCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
......+.+..+.... ...+....+|+|+|++.+...... +.-.+.++|||||||++-... .......+....
T Consensus 101 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~---~~~~i~~il~~l 177 (456)
T PRK10590 101 YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG---FIHDIRRVLAKL 177 (456)
T ss_pred cCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc---cHHHHHHHHHhC
Confidence 5433333333332211 112334679999999998765332 223578999999999985321 112233333333
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
......+++|||+.. ...+ +...+.. ++..+. . .
T Consensus 178 ~~~~q~l~~SAT~~~-~~~~---l~~~~~~---------------~~~~i~---------~------------------~ 211 (456)
T PRK10590 178 PAKRQNLLFSATFSD-DIKA---LAEKLLH---------------NPLEIE---------V------------------A 211 (456)
T ss_pred CccCeEEEEeCCCcH-HHHH---HHHHHcC---------------CCeEEE---------E------------------e
Confidence 334567999999632 1111 1111000 000000 0 0
Q ss_pred HHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhh
Q 001912 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS 503 (997)
Q Consensus 424 RR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~ 503 (997)
++ ...++...+.+. ..+... |..
T Consensus 212 ~~------~~~~~~i~~~~~-~~~~~~--------------------------------------------------k~~ 234 (456)
T PRK10590 212 RR------NTASEQVTQHVH-FVDKKR--------------------------------------------------KRE 234 (456)
T ss_pred cc------cccccceeEEEE-EcCHHH--------------------------------------------------HHH
Confidence 00 000001111111 000000 000
Q ss_pred hhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCce
Q 001912 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583 (997)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~ 583 (997)
.+...+. .....++|||++....++.|.+.|...|+.+..+||+++..+|..+++.|+ +++++
T Consensus 235 ~l~~l~~----------------~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~-~g~~~ 297 (456)
T PRK10590 235 LLSQMIG----------------KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK-SGDIR 297 (456)
T ss_pred HHHHHHH----------------cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-cCCCc
Confidence 0111111 123568999999999999999999999999999999999999999999999 67888
Q ss_pred EEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHH
Q 001912 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653 (997)
Q Consensus 584 VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~ 653 (997)
| |++|++++.|||+++.++||+||+|.++..|.|++||++|.|..-.+.+ |+..+ |..++..+++
T Consensus 298 i-LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 298 V-LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS--LVCVD--EHKLLRDIEK 362 (456)
T ss_pred E-EEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE--EecHH--HHHHHHHHHH
Confidence 8 8899999999999999999999999999999999999999997654433 33332 4444444433
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=8e-24 Score=250.12 Aligned_cols=315 Identities=18% Similarity=0.234 Sum_probs=213.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC----cEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG----SILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..+.|+|.+++..++. |..+|+..++|+|||...+..+...+... .+||+||+ .|..||.+++.++........
T Consensus 25 ~~~t~iQ~~ai~~~l~-g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~ 103 (460)
T PRK11776 25 TEMTPIQAQSLPAILA-GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIK 103 (460)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 4688999999998886 67899999999999988665444433322 48999999 899999999998764332334
Q ss_pred EEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 274 IHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 274 i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
+..+.|.... ...+....+|+|+|++.+...... +.-.++++||+||||++-+.. -......+.........
T Consensus 104 v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g---~~~~l~~i~~~~~~~~q 180 (460)
T PRK11776 104 VLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG---FQDAIDAIIRQAPARRQ 180 (460)
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC---cHHHHHHHHHhCCcccE
Confidence 4444443322 122345679999999998775432 223578999999999985422 12334444444444566
Q ss_pred EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 349 ~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
.+++|||+-. ++..+. ..+...... +.+
T Consensus 181 ~ll~SAT~~~----~~~~l~----------------~~~~~~~~~---------------------------i~~----- 208 (460)
T PRK11776 181 TLLFSATYPE----GIAAIS----------------QRFQRDPVE---------------------------VKV----- 208 (460)
T ss_pred EEEEEecCcH----HHHHHH----------------HHhcCCCEE---------------------------EEE-----
Confidence 8999999731 111111 111100000 000
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
......+. .++.. +...... |...+..+
T Consensus 209 ~~~~~~~~-i~~~~-~~~~~~~--------------------------------------------------k~~~l~~l 236 (460)
T PRK11776 209 ESTHDLPA-IEQRF-YEVSPDE--------------------------------------------------RLPALQRL 236 (460)
T ss_pred CcCCCCCC-eeEEE-EEeCcHH--------------------------------------------------HHHHHHHH
Confidence 00000111 11111 1111110 11222222
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+.. ..+.++||||+....++.+.+.|...|+.+..+||+++..+|+.+++.|+ +++.+| |++
T Consensus 237 l~~----------------~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~-~g~~~v-LVa 298 (460)
T PRK11776 237 LLH----------------HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA-NRSCSV-LVA 298 (460)
T ss_pred HHh----------------cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH-cCCCcE-EEE
Confidence 221 23468999999999999999999999999999999999999999999999 788888 888
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|.+++.|||++++++||++|+|.++..|.|++||++|.|+.-. .|.|+..+
T Consensus 299 Tdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 299 TDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred ecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 9999999999999999999999999999999999999997643 44455543
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=6e-24 Score=249.52 Aligned_cols=311 Identities=18% Similarity=0.210 Sum_probs=209.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-h-------CCcEEEEeCc-chHHHHHHHHHHHCCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-S-------AGSILVVCPA-ILRLSWAEELERWLPFC 269 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~-------~gp~LIV~P~-sL~~qW~~Ei~k~~p~~ 269 (997)
..++|+|.+++..++. |.++|+..++|+|||+.++..+...+ . ...+||++|+ .|+.|+.+.+..|....
T Consensus 22 ~~p~~iQ~~ai~~~~~-g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~ 100 (434)
T PRK11192 22 TRPTAIQAEAIPPALD-GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT 100 (434)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC
Confidence 4688999999998886 66799999999999999865444322 1 2358999999 79999999998887654
Q ss_pred CCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 270 LPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 270 ~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
. ..+..+.|..... ..+....+|+|+|++.+...... +....+++||+||||++-... .......+.....
T Consensus 101 ~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~---~~~~~~~i~~~~~ 176 (434)
T PRK11192 101 H-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG---FAQDIETIAAETR 176 (434)
T ss_pred C-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC---cHHHHHHHHHhCc
Confidence 3 3344444433221 11334678999999988765332 223567899999999985422 1233333433333
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhc-cccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
...+.+++|||+....+.++ ...+.. +..+. . .+
T Consensus 177 ~~~q~~~~SAT~~~~~~~~~-------------------~~~~~~~~~~i~---------~--------------~~--- 211 (434)
T PRK11192 177 WRKQTLLFSATLEGDAVQDF-------------------AERLLNDPVEVE---------A--------------EP--- 211 (434)
T ss_pred cccEEEEEEeecCHHHHHHH-------------------HHHHccCCEEEE---------e--------------cC---
Confidence 44567999999742211111 111100 00000 0 00
Q ss_pred HHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhh
Q 001912 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS 503 (997)
Q Consensus 424 RR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~ 503 (997)
.........+.+. .... ...|..
T Consensus 212 -------~~~~~~~i~~~~~-~~~~-------------------------------------------------~~~k~~ 234 (434)
T PRK11192 212 -------SRRERKKIHQWYY-RADD-------------------------------------------------LEHKTA 234 (434)
T ss_pred -------CcccccCceEEEE-EeCC-------------------------------------------------HHHHHH
Confidence 0000000011110 0000 001111
Q ss_pred hhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCce
Q 001912 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583 (997)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~ 583 (997)
.+..++.. ....++|||++....++.|...|...|+.+..+||+++..+|..+++.|+ +|+++
T Consensus 235 ~l~~l~~~----------------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~-~G~~~ 297 (434)
T PRK11192 235 LLCHLLKQ----------------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLT-DGRVN 297 (434)
T ss_pred HHHHHHhc----------------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHh-CCCCc
Confidence 12222221 23578999999999999999999999999999999999999999999999 78888
Q ss_pred EEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 584 VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
| |++|.+++.|||++.+++||+||+|+++..|.|++||++|.|..-.+.+
T Consensus 298 v-LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 298 V-LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred E-EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 8 8899999999999999999999999999999999999999997655444
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=5.5e-24 Score=251.39 Aligned_cols=306 Identities=21% Similarity=0.235 Sum_probs=208.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.+++.-++. |..+++..+||+|||+..+.-+. ...+.+|||+|+ +|+.||.+.+..... .+...
T Consensus 10 ~~~r~~Q~~ai~~~l~-g~dvlv~apTGsGKTl~y~lp~l--~~~~~~lVi~P~~~L~~dq~~~l~~~gi-----~~~~l 81 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL-GRDCFVVMPTGGGKSLCYQLPAL--CSDGITLVISPLISLMEDQVLQLKASGI-----PATFL 81 (470)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHhHHHHHHHH--HcCCcEEEEecHHHHHHHHHHHHHHcCC-----cEEEE
Confidence 4789999999998886 56899999999999997754433 346789999999 899999998876421 22333
Q ss_pred ccCCCCc------cc-ccCCCeEEEEehhHHHHH---HHhh-hhccccEEEeccccccccCCCCCcHHHHHHHHHHHh--
Q 001912 278 FGHRNNP------VH-LTRFPRVVVISYTMLHRL---RKSM-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-- 344 (997)
Q Consensus 278 ~g~~~~~------~~-~~~~~~VvItTy~~l~~~---~~~l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~-- 344 (997)
.+..... .. .....+|+++|++.+... ...+ ...++++|||||||.+-..+... ...+..+..+..
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f-r~~~~~l~~l~~~~ 160 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF-RPDYKALGSLKQKF 160 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc-HHHHHHHHHHHHHc
Confidence 3322111 01 123468999999987642 2333 34689999999999985432111 112333322221
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lR 424 (997)
....+++|||||......++...+.+-.|..+...
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s--------------------------------------------- 195 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS--------------------------------------------- 195 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---------------------------------------------
Confidence 23458999999865444444444332222111000
Q ss_pred HHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhh
Q 001912 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504 (997)
Q Consensus 425 R~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~ 504 (997)
..-|... ..+.-... .....
T Consensus 196 -------~~r~nl~-~~v~~~~~----------------------------------------------------~~~~~ 215 (470)
T TIGR00614 196 -------FDRPNLY-YEVRRKTP----------------------------------------------------KILED 215 (470)
T ss_pred -------CCCCCcE-EEEEeCCc----------------------------------------------------cHHHH
Confidence 0000000 00000000 00111
Q ss_pred hhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceE
Q 001912 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584 (997)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~V 584 (997)
+.+++.. ..++.++||||..+...+.+.+.|...|+.+..+||+++.++|..+++.|. .++++|
T Consensus 216 l~~~l~~---------------~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~-~g~~~v 279 (470)
T TIGR00614 216 LLRFIRK---------------EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ-RDEIQV 279 (470)
T ss_pred HHHHHHH---------------hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH-cCCCcE
Confidence 1222221 124667899999999999999999999999999999999999999999999 788888
Q ss_pred EEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 585 lLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
|++|.+.|.|||+++.++||++++|.++..|.|++||++|.|+.....+|
T Consensus 280 -LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 280 -VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred -EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 88899999999999999999999999999999999999999987665544
No 33
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.2e-23 Score=252.47 Aligned_cols=309 Identities=17% Similarity=0.221 Sum_probs=207.1
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-Hhh----------CCcEEEEeCc-chHHHHHHHHHHH
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FIS----------AGSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~----------~gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
...+.|.|..++..++. |..+|+..++|+|||+..+..+.. +.. ...+|||+|+ .|..|+.+++.+|
T Consensus 29 ~~~ptpiQ~~~ip~~l~-G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 29 FTRCTPIQALTLPVALP-GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCHHHHHHHHHHhC-CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 34789999999999886 678999999999999988765443 221 1358999999 8999999999998
Q ss_pred CCCCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHH
Q 001912 266 LPFCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al 339 (997)
..... ..+..+.|..... ..+....+|+|+|.+.|...... +.....++|||||||++-... .......+
T Consensus 108 ~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g---f~~~i~~i 183 (572)
T PRK04537 108 GADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG---FIKDIRFL 183 (572)
T ss_pred hccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc---hHHHHHHH
Confidence 76542 2344444433221 12334578999999998765432 223467899999999985321 11222333
Q ss_pred HHHHhh--cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHH
Q 001912 340 LDVAAK--VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417 (997)
Q Consensus 340 ~~l~~~--~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l 417 (997)
...... ....+++|||.-. .+. .+.. .+..... .
T Consensus 184 l~~lp~~~~~q~ll~SATl~~-~v~---~l~~----------------~~l~~p~------~------------------ 219 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSH-RVL---ELAY----------------EHMNEPE------K------------------ 219 (572)
T ss_pred HHhcccccCceEEEEeCCccH-HHH---HHHH----------------HHhcCCc------E------------------
Confidence 332222 3457999999531 111 1110 0000000 0
Q ss_pred HhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhh
Q 001912 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497 (997)
Q Consensus 418 ~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 497 (997)
+.+ ......+....+.+.+. ..
T Consensus 220 ---i~v-----~~~~~~~~~i~q~~~~~-~~------------------------------------------------- 241 (572)
T PRK04537 220 ---LVV-----ETETITAARVRQRIYFP-AD------------------------------------------------- 241 (572)
T ss_pred ---EEe-----ccccccccceeEEEEec-CH-------------------------------------------------
Confidence 000 00000001111111111 00
Q ss_pred hhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhc
Q 001912 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577 (997)
Q Consensus 498 ~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~ 577 (997)
..|...+..++. ...+.++|||++....++.|.+.|...|+.+..+||+++..+|..+++.|+
T Consensus 242 -~~k~~~L~~ll~----------------~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr 304 (572)
T PRK04537 242 -EEKQTLLLGLLS----------------RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQ 304 (572)
T ss_pred -HHHHHHHHHHHh----------------cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 001111122221 124678999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 578 ~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
.++++| |++|.+++.|||+...++||+||+|+++..|.|++||++|.|..-.+
T Consensus 305 -~G~~~V-LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a 357 (572)
T PRK04537 305 -KGQLEI-LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA 357 (572)
T ss_pred -cCCCeE-EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE
Confidence 778888 99999999999999999999999999999999999999999976443
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=2.7e-23 Score=246.37 Aligned_cols=307 Identities=14% Similarity=0.255 Sum_probs=202.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhh----------CCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFIS----------AGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~----------~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
..++|||.+++..++. |..+|+.-++|+|||+..+.-+ ..+.. ...+|||+|+ .|..||.+++..+.
T Consensus 108 ~~~~~iQ~~ai~~~~~-G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA-GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 4689999999987765 6789999999999998876543 33322 2358999999 89999999999887
Q ss_pred CCCCCceEEEEccCCCCc---ccc-cCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHH
Q 001912 267 PFCLPADIHLVFGHRNNP---VHL-TRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340 (997)
Q Consensus 267 p~~~~~~i~~~~g~~~~~---~~~-~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~ 340 (997)
.... ..+..+.|..+.. ..+ ....+|+|+|++.+...... +.-.+.++|||||+|++.+.. .......+.
T Consensus 187 ~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~---~~~~l~~i~ 262 (475)
T PRK01297 187 KYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG---FIPQVRQII 262 (475)
T ss_pred ccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc---cHHHHHHHH
Confidence 5443 2333344432211 112 23578999999999764432 222467899999999996422 112233333
Q ss_pred HHHhh--cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 341 DVAAK--VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 341 ~l~~~--~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
..... ....+++|||... ++.+ +.. .|....... ...
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~-~~~~---~~~----------------~~~~~~~~v--------~~~------------- 301 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTD-DVMN---LAK----------------QWTTDPAIV--------EIE------------- 301 (475)
T ss_pred HhCCCCCCceEEEEEeecCH-HHHH---HHH----------------HhccCCEEE--------Eec-------------
Confidence 33211 2468999999532 1111 111 110000000 000
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
+ ..+ ..+...+.+.... .
T Consensus 302 -~-------~~~---~~~~~~~~~~~~~-~-------------------------------------------------- 319 (475)
T PRK01297 302 -P-------ENV---ASDTVEQHVYAVA-G-------------------------------------------------- 319 (475)
T ss_pred -c-------CcC---CCCcccEEEEEec-c--------------------------------------------------
Confidence 0 000 0000001111000 0
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~ 578 (997)
..|...+...+.. ....++|||++.+..++.|.+.|...|+.+..++|+++.++|.++++.|+
T Consensus 320 ~~k~~~l~~ll~~----------------~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr- 382 (475)
T PRK01297 320 SDKYKLLYNLVTQ----------------NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR- 382 (475)
T ss_pred hhHHHHHHHHHHh----------------cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh-
Confidence 0011111111211 23568999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 579 ~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
+++++| |++|.+++.|||+.++++||++++|+++..+.|+.||++|.|+.-.
T Consensus 383 ~G~~~v-LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~ 434 (475)
T PRK01297 383 EGKIRV-LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV 434 (475)
T ss_pred CCCCcE-EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce
Confidence 778888 8899999999999999999999999999999999999999997643
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.8e-23 Score=244.37 Aligned_cols=313 Identities=14% Similarity=0.173 Sum_probs=205.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-Hhh----------CCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FIS----------AGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~----------~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
..+.|.|.+++..++. |..+|+..++|+|||+..+..+.. +.. ...+||++|+ .|+.||.+++..+.
T Consensus 29 ~~pt~iQ~~aip~il~-g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~ 107 (423)
T PRK04837 29 HNCTPIQALALPLTLA-GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLA 107 (423)
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHh
Confidence 4678999999988775 678999999999999987654432 221 1248999999 89999999998886
Q ss_pred CCCCCceEEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHH
Q 001912 267 PFCLPADIHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD 341 (997)
Q Consensus 267 p~~~~~~i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~ 341 (997)
.... ..+..+.|+... ...+....+|+|+|++.+...... +.-.++.+||+||||++-+.. .......+..
T Consensus 108 ~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~---f~~~i~~i~~ 183 (423)
T PRK04837 108 QATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG---FIKDIRWLFR 183 (423)
T ss_pred ccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc---cHHHHHHHHH
Confidence 5432 234444443321 112334579999999998765432 333578999999999985422 1122233333
Q ss_pred HHhh--cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhh-ccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 342 VAAK--VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYC-DVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 342 l~~~--~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
.... ....+++|||.-.. ..++ . ..+. ++..+ ....
T Consensus 184 ~~~~~~~~~~~l~SAT~~~~-~~~~---~----------------~~~~~~p~~i---------~v~~------------ 222 (423)
T PRK04837 184 RMPPANQRLNMLFSATLSYR-VREL---A----------------FEHMNNPEYV---------EVEP------------ 222 (423)
T ss_pred hCCCccceeEEEEeccCCHH-HHHH---H----------------HHHCCCCEEE---------EEcC------------
Confidence 2221 12358889996311 1111 0 0000 00000 0000
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
. ........+.+.. .+.
T Consensus 223 ----------~--~~~~~~i~~~~~~-~~~-------------------------------------------------- 239 (423)
T PRK04837 223 ----------E--QKTGHRIKEELFY-PSN-------------------------------------------------- 239 (423)
T ss_pred ----------C--CcCCCceeEEEEe-CCH--------------------------------------------------
Confidence 0 0000000011100 000
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~ 578 (997)
..|...+..++.. ....++|||++....++.|.+.|...|+++..+||+++.++|..+++.|+
T Consensus 240 ~~k~~~l~~ll~~----------------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~- 302 (423)
T PRK04837 240 EEKMRLLQTLIEE----------------EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT- 302 (423)
T ss_pred HHHHHHHHHHHHh----------------cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH-
Confidence 0111112222211 23568999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeC
Q 001912 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640 (997)
Q Consensus 579 ~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~ 640 (997)
.++++| |++|.+++.|||+++.++||+||+|+++..|.|++||++|.|+.-. ++.|+.+
T Consensus 303 ~g~~~v-LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 303 RGDLDI-LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred cCCCcE-EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 788888 8999999999999999999999999999999999999999997643 3344444
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.92 E-value=3.4e-23 Score=246.91 Aligned_cols=329 Identities=17% Similarity=0.221 Sum_probs=211.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHh----------hCCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFI----------SAGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~----------~~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
..+.|+|.+++..++. |..+|+..++|+|||+..+..+. ... ....+|||+|+ .|..|+.+++..+.
T Consensus 142 ~~ptpiQ~~aip~il~-g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 142 EFPTPIQMQAIPAALS-GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 5789999999998885 77899999999999998765432 221 12248999999 89999999998886
Q ss_pred CCCCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHH
Q 001912 267 PFCLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV 342 (997)
Q Consensus 267 p~~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l 342 (997)
.......+.++.|.... ...+....+|+|+|++.+...... +.-.+..+||+||||++-..+ -......+...
T Consensus 221 ~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g---f~~~i~~i~~~ 297 (518)
T PLN00206 221 KGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG---FRDQVMQIFQA 297 (518)
T ss_pred CCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc---hHHHHHHHHHh
Confidence 55433333333332211 122344679999999988765432 223567899999999985422 11222233332
Q ss_pred HhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHH
Q 001912 343 AAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422 (997)
Q Consensus 343 ~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~ 422 (997)
. ..++++++|||.-. ++-.+...+..+. ..+. . +
T Consensus 298 l-~~~q~l~~SATl~~----~v~~l~~~~~~~~---------------~~i~-~-~------------------------ 331 (518)
T PLN00206 298 L-SQPQVLLFSATVSP----EVEKFASSLAKDI---------------ILIS-I-G------------------------ 331 (518)
T ss_pred C-CCCcEEEEEeeCCH----HHHHHHHHhCCCC---------------EEEE-e-C------------------------
Confidence 2 34678999999632 1111111110000 0000 0 0
Q ss_pred HHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 423 lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
....+......+.+.....+ |.
T Consensus 332 --------~~~~~~~~v~q~~~~~~~~~--------------------------------------------------k~ 353 (518)
T PLN00206 332 --------NPNRPNKAVKQLAIWVETKQ--------------------------------------------------KK 353 (518)
T ss_pred --------CCCCCCcceeEEEEeccchh--------------------------------------------------HH
Confidence 00001110011111111000 00
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHhccCCC
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~-~gi~~~~idG~~s~~eR~~~i~~F~~~~~ 581 (997)
..+.+.+... .....++|||++.+..++.|.+.|.. .|+.+..+||+++..+|..+++.|+ .++
T Consensus 354 ~~l~~~l~~~--------------~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr-~G~ 418 (518)
T PLN00206 354 QKLFDILKSK--------------QHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFL-VGE 418 (518)
T ss_pred HHHHHHHHhh--------------cccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHH-CCC
Confidence 0111111110 01235799999999999999999975 5999999999999999999999999 788
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhH
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~ 655 (997)
++| |++|.+++.|||++.+++||+||+|.++..|.|++||++|.|..- .++.|+..+ |..++..+.+.+
T Consensus 419 ~~I-LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~--~~~~~~~l~~~l 487 (518)
T PLN00206 419 VPV-IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE--DRNLFPELVALL 487 (518)
T ss_pred CCE-EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh--HHHHHHHHHHHH
Confidence 888 899999999999999999999999999999999999999999653 344455443 334444444433
No 37
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.92 E-value=6.3e-23 Score=249.76 Aligned_cols=372 Identities=19% Similarity=0.258 Sum_probs=237.9
Q ss_pred hhHhhhhcCCChhhhccChhhHHHHHHHHHhc-----CCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCc-chHH
Q 001912 184 EVVDEMIGKLPKSLLDVILPFQLEGVRFGLRR-----GGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPA-ILRL 256 (997)
Q Consensus 184 ~~~~~~~~~lp~~l~~~L~pyQ~~gV~~~l~~-----~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~-sL~~ 256 (997)
....+.+..+|. +|.++|.+++..++.. ..+.||..++|+|||+.++..+.... ....++|++|+ .|..
T Consensus 223 ~~~~~~~~~lpf----~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF----KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC----CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 344555566664 6899999999987652 12468888999999999876544444 44579999999 8889
Q ss_pred HHHHHHHHHCCCCCCceEEEEccCCCCcc------cc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCC
Q 001912 257 SWAEELERWLPFCLPADIHLVFGHRNNPV------HL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR 329 (997)
Q Consensus 257 qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~------~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~ 329 (997)
||.+++.+|++... ..+.++.|...... .+ ....+|+|+|+..+.... .-.+.++||+||+|++.
T Consensus 299 Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg---- 370 (630)
T TIGR00643 299 QHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFG---- 370 (630)
T ss_pred HHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhcc----
Confidence 99999999987532 34555555433211 11 124689999998875432 22578999999999972
Q ss_pred CCcHHHHHHHHHHHh--hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhh
Q 001912 330 TSEPEEVKAVLDVAA--KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 330 ~~~s~~~~al~~l~~--~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 407 (997)
......+..... ..++++++||||+...+. +.. ++...
T Consensus 371 ---~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~------~~~l~--------------------------- 410 (630)
T TIGR00643 371 ---VEQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTV------YGDLD--------------------------- 410 (630)
T ss_pred ---HHHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHh------cCCcc---------------------------
Confidence 122233333322 146799999999853211 100 00000
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhh
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (997)
..+...+|+....+....+...... .++
T Consensus 411 --------------------~~~i~~~p~~r~~i~~~~~~~~~~~---~~~----------------------------- 438 (630)
T TIGR00643 411 --------------------TSIIDELPPGRKPITTVLIKHDEKD---IVY----------------------------- 438 (630)
T ss_pred --------------------eeeeccCCCCCCceEEEEeCcchHH---HHH-----------------------------
Confidence 0001123321111111111111100 000
Q ss_pred cccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCH--------HHHHHHHHHHHH--cCCeE
Q 001912 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL--------KVLDGVQEFISE--KGIGF 557 (997)
Q Consensus 488 ~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~--------~~ld~L~~~L~~--~gi~~ 557 (997)
+++.. ....+++++||+... ..+..+.+.|.. .++.+
T Consensus 439 -------------------~~i~~--------------~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v 485 (630)
T TIGR00643 439 -------------------EFIEE--------------EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNV 485 (630)
T ss_pred -------------------HHHHH--------------HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcE
Confidence 00000 002355677776543 234455555654 37889
Q ss_pred EEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCC-CccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ-SPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 558 ~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~w-np~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
..+||+|+.++|.+++++|+ +++.+| |++|.+.++|+|++++++||+++++. +-+.+.|+.||++|-|..-.+. .
T Consensus 486 ~~lHG~m~~~eR~~i~~~F~-~g~~~I-LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i--l 561 (630)
T TIGR00643 486 GLLHGRMKSDEKEAVMEEFR-EGEVDI-LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL--L 561 (630)
T ss_pred EEEeCCCCHHHHHHHHHHHH-cCCCCE-EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE--E
Confidence 99999999999999999999 678888 88899999999999999999999885 6788999999999988654333 2
Q ss_pred Ee-eCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccccCcCccccchhhccCchHH
Q 001912 637 FC-AKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQF 704 (997)
Q Consensus 637 Li-~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 704 (997)
+. ...+ +. ..++++.+....+|..-+..++...+.++++. ..+.|..++...++..+.++
T Consensus 562 ~~~~~~~--~~----~~~rl~~~~~~~dgf~iae~dl~~Rg~g~~~g--~~QsG~~~~~~~~~~~d~~~ 622 (630)
T TIGR00643 562 VYKNPKS--ES----AKKRLRVMADTLDGFVIAEEDLELRGPGDLLG--TKQSGYPEFRVADLVRDREI 622 (630)
T ss_pred EECCCCC--HH----HHHHHHHHHhhcccHHHHHHHHhcCCCcccCC--CcccCCCcceeecHHHHHHH
Confidence 23 2222 22 23445677778888887888888888888774 55666677777777666543
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=8.5e-23 Score=246.44 Aligned_cols=309 Identities=19% Similarity=0.222 Sum_probs=206.6
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-h---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-S---AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..+.|+|.+++..++. +..+|+..++|+|||+..+..+.... . ...+||+||+ .|+.||.+++.+|........
T Consensus 27 ~~ptpiQ~~ai~~ll~-g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 27 EKPSPIQAECIPHLLN-GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 4789999999998886 66789999999999998754333222 2 2258999999 899999999998865433333
Q ss_pred EEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 274 IHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 274 i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
+..+.+..... ..+....+|||+|++.+...... +.-.++.+||+||||.+-+... ......++........
T Consensus 106 v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf---~~di~~Il~~lp~~~q 182 (629)
T PRK11634 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGF---IEDVETIMAQIPEGHQ 182 (629)
T ss_pred EEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhccc---HHHHHHHHHhCCCCCe
Confidence 44444433211 12334678999999998764332 2235678999999998754221 1223334433334456
Q ss_pred EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 349 ~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
.+++|||.-. ... .+...|...... +.+ ..
T Consensus 183 ~llfSAT~p~-~i~-------------------~i~~~~l~~~~~---------------------------i~i---~~ 212 (629)
T PRK11634 183 TALFSATMPE-AIR-------------------RITRRFMKEPQE---------------------------VRI---QS 212 (629)
T ss_pred EEEEEccCCh-hHH-------------------HHHHHHcCCCeE---------------------------EEc---cC
Confidence 7999999521 111 111111110000 000 00
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
. ....|. ..+... ... ...|...+..+
T Consensus 213 ~-~~~~~~-i~q~~~-~v~--------------------------------------------------~~~k~~~L~~~ 239 (629)
T PRK11634 213 S-VTTRPD-ISQSYW-TVW--------------------------------------------------GMRKNEALVRF 239 (629)
T ss_pred c-cccCCc-eEEEEE-Eec--------------------------------------------------hhhHHHHHHHH
Confidence 0 000111 011110 000 01122222233
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+.. ....++||||.....++.|.+.|...|+.+..+||.++..+|..++++|+ ++++.| |++
T Consensus 240 L~~----------------~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr-~G~~~I-LVA 301 (629)
T PRK11634 240 LEA----------------EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK-DGRLDI-LIA 301 (629)
T ss_pred HHh----------------cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh-CCCCCE-EEE
Confidence 321 22457999999999999999999999999999999999999999999999 678888 899
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
|.+++.|||++..++||+||+|.++..|.|++||++|.|..-..
T Consensus 302 Tdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred cchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 99999999999999999999999999999999999999976443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=7e-23 Score=248.33 Aligned_cols=301 Identities=20% Similarity=0.220 Sum_probs=205.6
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.+++.-++. |..+++..+||.|||+..+..+. ...+.+|||+|. +|+.||.+.+.... . .....
T Consensus 24 ~~~r~~Q~~ai~~il~-g~dvlv~apTGsGKTl~y~lpal--~~~g~tlVisPl~sL~~dqv~~l~~~g--i---~~~~~ 95 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS-GRDCLVVMPTGGGKSLCYQIPAL--VLDGLTLVVSPLISLMKDQVDQLLANG--V---AAACL 95 (607)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHH--HcCCCEEEEecHHHHHHHHHHHHHHcC--C---cEEEE
Confidence 3789999999988775 67899999999999998754433 346789999999 89999999888642 1 12222
Q ss_pred ccCCCCcc------c-ccCCCeEEEEehhHHHH--HHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--c
Q 001912 278 FGHRNNPV------H-LTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--V 346 (997)
Q Consensus 278 ~g~~~~~~------~-~~~~~~VvItTy~~l~~--~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~ 346 (997)
.+...... . .....+++++|++.+.. ....+...++++|||||||.+-..+... ...+..+..+... .
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f-r~~y~~L~~l~~~~p~ 174 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF-RPEYAALGQLRQRFPT 174 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc-cHHHHHHHHHHHhCCC
Confidence 22211100 0 11245789999998763 3344555689999999999985432211 1123333333222 3
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
..+++||||+-.....++...+.+-+|..+...
T Consensus 175 ~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~----------------------------------------------- 207 (607)
T PRK11057 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQISS----------------------------------------------- 207 (607)
T ss_pred CcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-----------------------------------------------
Confidence 457999999876554455444432222111000
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
...|.....++. .. .+...+.
T Consensus 208 -----~~r~nl~~~v~~-~~-----------------------------------------------------~~~~~l~ 228 (607)
T PRK11057 208 -----FDRPNIRYTLVE-KF-----------------------------------------------------KPLDQLM 228 (607)
T ss_pred -----CCCCcceeeeee-cc-----------------------------------------------------chHHHHH
Confidence 000000000000 00 0001111
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
.++.. ..+.++||||+.+..++.+...|...|+.+..+||+++.++|..+++.|+ .++++| |
T Consensus 229 ~~l~~----------------~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~-~g~~~V-L 290 (607)
T PRK11057 229 RYVQE----------------QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ-RDDLQI-V 290 (607)
T ss_pred HHHHh----------------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH-CCCCCE-E
Confidence 22221 24678999999999999999999999999999999999999999999999 678888 8
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
++|.++|.|||+++.++||+||+|.+...|.|++||++|.|.....
T Consensus 291 VaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred EEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 8899999999999999999999999999999999999999976543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=7.3e-23 Score=248.76 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=207.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.+++.-++. |..++++.+||.|||+.+...+. ...+.++||+|. +|+.++.+.+.... . .+...
T Consensus 12 ~~fr~~Q~~~i~~il~-g~dvlv~~PTG~GKTl~y~lpal--~~~g~~lVisPl~sL~~dq~~~l~~~g--i---~~~~~ 83 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD-GRDVLVVMPTGGGKSLCYQVPAL--LLKGLTVVISPLISLMKDQVDQLRAAG--V---AAAYL 83 (591)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCccHhHHHHHHHH--HcCCcEEEEcCCHHHHHHHHHHHHHcC--C---cEEEE
Confidence 3689999999988776 66899999999999998865443 457889999999 89999999888742 1 22223
Q ss_pred ccCCCCcc--c-----ccCCCeEEEEehhHHHH--HHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--c
Q 001912 278 FGHRNNPV--H-----LTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--V 346 (997)
Q Consensus 278 ~g~~~~~~--~-----~~~~~~VvItTy~~l~~--~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~ 346 (997)
.+...... . .....+|+++|++.+.. ....+...+.++|||||||.+-..+... ...+..+..+... .
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f-rp~y~~l~~l~~~~~~ 162 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF-RPEYQRLGSLAERFPQ 162 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc-HHHHHHHHHHHHhCCC
Confidence 22221110 0 12346899999998853 3334555789999999999985432111 1123333333222 2
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
..+++||||+......++...+.+-.|..+-..
T Consensus 163 ~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~----------------------------------------------- 195 (591)
T TIGR01389 163 VPRIALTATADAETRQDIRELLRLADANEFITS----------------------------------------------- 195 (591)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-----------------------------------------------
Confidence 338999999865544444443322111111000
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
...|.....++.. ..+...+.
T Consensus 196 -----~~r~nl~~~v~~~------------------------------------------------------~~~~~~l~ 216 (591)
T TIGR01389 196 -----FDRPNLRFSVVKK------------------------------------------------------NNKQKFLL 216 (591)
T ss_pred -----CCCCCcEEEEEeC------------------------------------------------------CCHHHHHH
Confidence 0001000000000 00011122
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
+++.. ..+.+.||||..+...+.+.+.|...|+++..+||+++.++|..+++.|. .+++.| |
T Consensus 217 ~~l~~----------------~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~-~g~~~v-l 278 (591)
T TIGR01389 217 DYLKK----------------HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFL-YDDVKV-M 278 (591)
T ss_pred HHHHh----------------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH-cCCCcE-E
Confidence 23322 12568999999999999999999999999999999999999999999998 677888 8
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEE
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~ 633 (997)
++|.+.|.|||+++.++||++++|.|...+.|++||++|.|+.....
T Consensus 279 VaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 279 VATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred EEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999999999765543
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=1.4e-22 Score=248.39 Aligned_cols=373 Identities=17% Similarity=0.242 Sum_probs=238.8
Q ss_pred hHhhhhcCCChhhhccChhhHHHHHHHHHhc-----CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHH
Q 001912 185 VVDEMIGKLPKSLLDVILPFQLEGVRFGLRR-----GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLS 257 (997)
Q Consensus 185 ~~~~~~~~lp~~l~~~L~pyQ~~gV~~~l~~-----~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~q 257 (997)
.++.+...+|. .|.++|.+++.-+... ..+.||.-+||+|||+.++..+..... ...+||++|+ .|..|
T Consensus 250 ~~~~~~~~l~f----~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 250 LLKKFLASLPF----ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred HHHHHHHhCCC----CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 33444445554 6899999999886652 135788889999999999866554444 4479999999 89999
Q ss_pred HHHHHHHHCCCCCCceEEEEccCCCCcc------ccc-CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCC
Q 001912 258 WAEELERWLPFCLPADIHLVFGHRNNPV------HLT-RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330 (997)
Q Consensus 258 W~~Ei~k~~p~~~~~~i~~~~g~~~~~~------~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~ 330 (997)
+.+.+.+|++... ..+..+.|...... .+. ...+|+|+|+..+.... .-.+.++||+||+|++.
T Consensus 326 ~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg----- 396 (681)
T PRK10917 326 HYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFG----- 396 (681)
T ss_pred HHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhh-----
Confidence 9999999987542 34555555443211 111 24799999998875422 12578999999999972
Q ss_pred CcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccH
Q 001912 331 SEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410 (997)
Q Consensus 331 ~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (997)
......+... ...+++++|||||++..+. +.. ++... .
T Consensus 397 --~~qr~~l~~~-~~~~~iL~~SATp~prtl~----~~~------~g~~~-----------------------~------ 434 (681)
T PRK10917 397 --VEQRLALREK-GENPHVLVMTATPIPRTLA----MTA------YGDLD-----------------------V------ 434 (681)
T ss_pred --HHHHHHHHhc-CCCCCEEEEeCCCCHHHHH----HHH------cCCCc-----------------------e------
Confidence 2223333332 2347899999999743211 000 01000 0
Q ss_pred HHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhccc
Q 001912 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490 (997)
Q Consensus 411 ~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (997)
.+...+|+....+............
T Consensus 435 ------------------s~i~~~p~~r~~i~~~~~~~~~~~~------------------------------------- 459 (681)
T PRK10917 435 ------------------SVIDELPPGRKPITTVVIPDSRRDE------------------------------------- 459 (681)
T ss_pred ------------------EEEecCCCCCCCcEEEEeCcccHHH-------------------------------------
Confidence 0011233211111110000000000
Q ss_pred ccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHH--------HHHHHHHHHHHc--CCeEEEE
Q 001912 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK--------VLDGVQEFISEK--GIGFVRI 560 (997)
Q Consensus 491 ~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~--------~ld~L~~~L~~~--gi~~~~i 560 (997)
+.+.+.. ....+++++|||...+ .+..+.+.|... ++++..+
T Consensus 460 --------------~~~~i~~--------------~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~l 511 (681)
T PRK10917 460 --------------VYERIRE--------------EIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLL 511 (681)
T ss_pred --------------HHHHHHH--------------HHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEE
Confidence 0001110 0024678888886432 234556666654 5789999
Q ss_pred eCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCC-CccHHhhHHHhhhhcCCCCeEEEEEEee
Q 001912 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ-SPSLMLQAEDRAHRRGQTSAVNIYIFCA 639 (997)
Q Consensus 561 dG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~w-np~~~~Qa~gRa~RiGQ~k~V~Vy~Li~ 639 (997)
||+|+.++|++++++|. .++.+| |+||.+.++|+|++++++||+++++. ..+.+.|+.||++|-|... ++|.+..
T Consensus 512 HG~m~~~eR~~i~~~F~-~g~~~I-LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g--~~ill~~ 587 (681)
T PRK10917 512 HGRMKPAEKDAVMAAFK-AGEIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS--YCVLLYK 587 (681)
T ss_pred eCCCCHHHHHHHHHHHH-cCCCCE-EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--EEEEEEC
Confidence 99999999999999999 678888 89999999999999999999999975 5788999999999988653 3333332
Q ss_pred CCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccccCcCccccchhhccCchHHHh
Q 001912 640 KDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706 (997)
Q Consensus 640 ~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (997)
. ...+. ..+++..+.+..+|..-+..++..++.++++ +..+.|..++...++..+.++-+
T Consensus 588 ~-~~~~~----~~~rl~~~~~~~dgf~iae~dl~~rg~g~~~--g~~q~g~~~~~~~~~~~d~~l~~ 647 (681)
T PRK10917 588 D-PLSET----ARERLKIMRETNDGFVIAEKDLELRGPGELL--GTRQSGLPEFKVADLVRDEELLE 647 (681)
T ss_pred C-CCChh----HHHHHHHHHHhcchHHHHHHhHhhCCCcccc--CceecCCCCeeEeeHhhhHHHHH
Confidence 2 21121 2344566777788887777888888888877 44556667777777666654443
No 42
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.1e-22 Score=234.47 Aligned_cols=384 Identities=18% Similarity=0.284 Sum_probs=258.1
Q ss_pred ChhhHhhhhcCCChhhhccChhhHHHHHHHHHh---c--CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-ch
Q 001912 182 SDEVVDEMIGKLPKSLLDVILPFQLEGVRFGLR---R--GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-IL 254 (997)
Q Consensus 182 ~~~~~~~~~~~lp~~l~~~L~pyQ~~gV~~~l~---~--~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL 254 (997)
..+....++..+|. +|-..|+.++.-... . .-+-+|--|+|+|||+.|+..+......| .+...+|+ -|
T Consensus 248 ~~~l~~~~~~~LPF----~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEIL 323 (677)
T COG1200 248 NGELLAKFLAALPF----KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEIL 323 (677)
T ss_pred cHHHHHHHHHhCCC----CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHH
Confidence 33445555666666 455699999987532 1 11226677799999999987776666654 69999999 57
Q ss_pred HHHHHHHHHHHCCCCCCceEEEEccCCCCcc------cc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccC
Q 001912 255 RLSWAEELERWLPFCLPADIHLVFGHRNNPV------HL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCS 327 (997)
Q Consensus 255 ~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~------~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~ 327 (997)
..|..+.+.+|++.+. ..+....|.-.... .+ ....+|||.|+..+.....+ .+..+||+||-|++.
T Consensus 324 A~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG-- 397 (677)
T COG1200 324 AEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG-- 397 (677)
T ss_pred HHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---cceeEEEEecccccc--
Confidence 7789999999998653 34555555433221 12 23478999999988765443 678999999999983
Q ss_pred CCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhh
Q 001912 328 KRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 328 ~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 407 (997)
-..-..+.......++.|.||||||+..+. + ..||+..
T Consensus 398 -----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA----l------t~fgDld--------------------------- 435 (677)
T COG1200 398 -----VHQRLALREKGEQNPHVLVMTATPIPRTLA----L------TAFGDLD--------------------------- 435 (677)
T ss_pred -----HHHHHHHHHhCCCCCcEEEEeCCCchHHHH----H------HHhcccc---------------------------
Confidence 333344444432257999999999976533 0 1122111
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHH-HHHHHhhhccccCCCCCCCCCCccccchhh
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA-AVGVINDSEKDATNDKTPKDSDEHDDSGAC 486 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (997)
-+++.+||+.+..+.+.-+..++...... +.+++...
T Consensus 436 --------------------vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~G---------------------- 473 (677)
T COG1200 436 --------------------VSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKG---------------------- 473 (677)
T ss_pred --------------------chhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcC----------------------
Confidence 02356899987766666655554433222 22222110
Q ss_pred hcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCC
Q 001912 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNT 564 (997)
Q Consensus 487 ~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~ 564 (997)
++. +-..|++.+++ |. ....+..+.+.|... ++++..+||.|
T Consensus 474 ---rQa----------------Y~VcPLIeESE------------~l-----~l~~a~~~~~~L~~~~~~~~vgL~HGrm 517 (677)
T COG1200 474 ---RQA----------------YVVCPLIEESE------------KL-----ELQAAEELYEELKSFLPELKVGLVHGRM 517 (677)
T ss_pred ---CEE----------------EEEeccccccc------------cc-----hhhhHHHHHHHHHHHcccceeEEEecCC
Confidence 000 01112222211 10 012344455555533 56788999999
Q ss_pred CHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 565 LPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 565 s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
+.+++++++.+|+ ++++.| |+||.+..+|+|+++|+.+|+.++. +--+++.|-.||++| |...+..|-.+-.+.+
T Consensus 518 ~~~eKd~vM~~Fk-~~e~~I-LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR-G~~qSyC~Ll~~~~~~- 593 (677)
T COG1200 518 KPAEKDAVMEAFK-EGEIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR-GDLQSYCVLLYKPPLS- 593 (677)
T ss_pred ChHHHHHHHHHHH-cCCCcE-EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC-CCcceEEEEEeCCCCC-
Confidence 9999999999999 788998 9999999999999999999999986 789999999999999 6666555433333332
Q ss_pred HHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccccCcCccccchhhccCchHHHh
Q 001912 644 DESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQE 706 (997)
Q Consensus 644 Ee~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (997)
+ ..++++..+..+.||..-+..++..++.++++. -.+.|..++...++..|.++-+
T Consensus 594 ~-----~a~~RL~im~~t~DGF~IAE~DLklRGpGe~lG--~rQSG~~~f~~Adl~~D~~ile 649 (677)
T COG1200 594 E-----VAKQRLKIMRETTDGFVIAEEDLKLRGPGELLG--TRQSGLPEFRVADLVRDYDILE 649 (677)
T ss_pred h-----hHHHHHHHHHhcCCcceehhhhHhccCCccccC--CcccCCcceEEeeHHhhHHHHH
Confidence 2 235778899999999999999999999999874 4556677888888777765433
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=2.2e-22 Score=234.25 Aligned_cols=316 Identities=17% Similarity=0.208 Sum_probs=204.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..+.|+|..++..++. +..+|+..++|+|||+.++..+..... ...+|||+|+ .|+.|+.+.+..+...... .
T Consensus 49 ~~~~~~Q~~ai~~i~~-~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-~ 126 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD-GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV-R 126 (401)
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc-e
Confidence 3689999999998776 667899999999999987655444332 3469999999 8999998888887654322 2
Q ss_pred EEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 274 IHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 274 i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
.....|.... ...+....+|+|+|++.+...... +.-.++++||+||+|++.... . ......+........+
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~--~-~~~~~~i~~~~~~~~~ 203 (401)
T PTZ00424 127 CHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG--F-KGQIYDVFKKLPPDVQ 203 (401)
T ss_pred EEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc--h-HHHHHHHHhhCCCCcE
Confidence 2222232211 122333568999999988654332 223578999999999985321 1 1112222222223346
Q ss_pred EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 349 ~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
++++|||+-. ...+ +...|..... . +.+ +.
T Consensus 204 ~i~~SAT~~~-~~~~-------------------~~~~~~~~~~------~---------------------~~~---~~ 233 (401)
T PTZ00424 204 VALFSATMPN-EILE-------------------LTTKFMRDPK------R---------------------ILV---KK 233 (401)
T ss_pred EEEEEecCCH-HHHH-------------------HHHHHcCCCE------E---------------------EEe---CC
Confidence 8999999632 1111 1111100000 0 000 00
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
..+.........+...... .+...+.+.
T Consensus 234 ---~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~l~~~ 261 (401)
T PTZ00424 234 ---DELTLEGIRQFYVAVEKEE-------------------------------------------------WKFDTLCDL 261 (401)
T ss_pred ---CCcccCCceEEEEecChHH-------------------------------------------------HHHHHHHHH
Confidence 0000000000111111000 001111111
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+.. ....++||||..+..++.+.+.|...++.+..+||+++.++|..+++.|+ +++++| |++
T Consensus 262 ~~~----------------~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~-~g~~~v-Lva 323 (401)
T PTZ00424 262 YET----------------LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR-SGSTRV-LIT 323 (401)
T ss_pred HHh----------------cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH-cCCCCE-EEE
Confidence 111 12457999999999999999999999999999999999999999999999 788888 899
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|.++++|||++.+++||++|++.++..+.|++||++|.|.. -.++.|+...
T Consensus 324 T~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 324 TDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred cccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 99999999999999999999999999999999999998854 3455566554
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=1e-22 Score=252.56 Aligned_cols=338 Identities=16% Similarity=0.221 Sum_probs=225.0
Q ss_pred cChhhHHHHHHHHHhc-----CCCeEEEcCCCchHHHHHHHHHHH-HhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRR-----GGRCLIADEMGLGKTLQAIAIAAC-FISAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~-----~g~~ILaDemGLGKTlqaial~~~-~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.+.|+|..++..++.. +...|+.-+||+|||..++..+.. +.....++|+||+ .|..|+.+.|.+++.... .
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i 529 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFP-V 529 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCC-c
Confidence 6899999999987652 236789999999999998755443 3345579999999 899999999999876542 3
Q ss_pred eEEEEccCCCCc------cccc-CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 273 DIHLVFGHRNNP------VHLT-RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 273 ~i~~~~g~~~~~------~~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+..+.+..... ..+. ...+|||+|+..+.+. +.-.+.++|||||+|++. ......+..+ ..
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfg-------v~~~~~L~~~-~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFG-------VKQKEKLKEL-RT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccc-------hhHHHHHHhc-CC
Confidence 344444322211 1111 2478999999766432 222577999999999973 1222333333 24
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
..++++|||||++..+. ..+. +... +
T Consensus 599 ~~~vL~~SATpiprtl~---~~l~----g~~d------------------------------------------~----- 624 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLH---MSMS----GIRD------------------------------------------L----- 624 (926)
T ss_pred CCCEEEEecCCCHHHHH---HHHh----cCCC------------------------------------------c-----
Confidence 56799999999753211 1110 0000 0
Q ss_pred HhhhhhccCCCceEEEE---EEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQII---RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i---~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
.+. ..||..+..+ ....+... ..
T Consensus 625 ---s~I-~~~p~~R~~V~t~v~~~~~~~--i~------------------------------------------------ 650 (926)
T TIGR00580 625 ---SII-ATPPEDRLPVRTFVMEYDPEL--VR------------------------------------------------ 650 (926)
T ss_pred ---EEE-ecCCCCccceEEEEEecCHHH--HH------------------------------------------------
Confidence 000 0111111111 11111000 00
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCC
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSN 580 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~ 580 (997)
+.+.. ....+.+++||++....++.+.+.|... ++++..+||.|+..+|.+++++|. ++
T Consensus 651 ----~~i~~--------------el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~-~G 711 (926)
T TIGR00580 651 ----EAIRR--------------ELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY-KG 711 (926)
T ss_pred ----HHHHH--------------HHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH-cC
Confidence 00000 0023678999999999999999999885 789999999999999999999999 78
Q ss_pred CceEEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 581 ~~~VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
+.+| |+||.+.++|||++.+++||+++++ +....+.|++||++|-|.. -++|.++..+.. +-....+++..+.
T Consensus 712 k~~I-LVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~~~~---l~~~~~~RL~~~~ 785 (926)
T TIGR00580 712 EFQV-LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPHQKA---LTEDAQKRLEAIQ 785 (926)
T ss_pred CCCE-EEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECCccc---CCHHHHHHHHHHH
Confidence 8888 9999999999999999999999986 4667899999999998754 445555544321 1122345566666
Q ss_pred hhhC---CChhhhhhhchhhhhcccc
Q 001912 660 SATN---GKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 660 ~~l~---g~~~~~~~~~~~~~~~l~~ 682 (997)
+..+ |..-+..+++..|.+.+..
T Consensus 786 ~~~~~g~gf~ia~~Dl~~Rg~G~~lG 811 (926)
T TIGR00580 786 EFSELGAGFKIALHDLEIRGAGNLLG 811 (926)
T ss_pred HhhcchhhHHHHHHHHHhcCCcCCCC
Confidence 6655 7788999999999988874
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=3.4e-22 Score=253.02 Aligned_cols=336 Identities=16% Similarity=0.217 Sum_probs=225.3
Q ss_pred cChhhHHHHHHHHHhc-----CCCeEEEcCCCchHHHHHHHHHHH-HhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRR-----GGRCLIADEMGLGKTLQAIAIAAC-FISAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~-----~g~~ILaDemGLGKTlqaial~~~-~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.+.+.|.+++.-++.. +...|++.+||+|||.+++..+.. ......+||+||+ .|..|..+.+.+++... ..
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v 678 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANW-PV 678 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccC-Cc
Confidence 6889999999876652 246799999999999998744433 3345579999999 78899999999876543 23
Q ss_pred eEEEEccCCCCccc------c-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 273 DIHLVFGHRNNPVH------L-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 273 ~i~~~~g~~~~~~~------~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+.++.+....... + ....+|||+|++.+... +.-.++++|||||+|++.. .....+.. ...
T Consensus 679 ~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~-------~~~e~lk~-l~~ 747 (1147)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV-------RHKERIKA-MRA 747 (1147)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch-------hHHHHHHh-cCC
Confidence 34444433222111 1 12568999999876532 2225789999999999831 11222322 234
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhh-ccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINML-WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l-~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lR 424 (997)
..+++++||||++.... ..+..+ +|..+
T Consensus 748 ~~qvLl~SATpiprtl~---l~~~gl~d~~~I------------------------------------------------ 776 (1147)
T PRK10689 748 DVDILTLTATPIPRTLN---MAMSGMRDLSII------------------------------------------------ 776 (1147)
T ss_pred CCcEEEEcCCCCHHHHH---HHHhhCCCcEEE------------------------------------------------
Confidence 56799999999854311 000000 00000
Q ss_pred HHhhhhhccCCCceE---EEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhh
Q 001912 425 RLKQHLLVQLPPKRR---QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501 (997)
Q Consensus 425 R~k~~v~~~LP~k~~---~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K 501 (997)
..|+..+ ..+......... +
T Consensus 777 --------~~~p~~r~~v~~~~~~~~~~~~-------------------------------------------------k 799 (1147)
T PRK10689 777 --------ATPPARRLAVKTFVREYDSLVV-------------------------------------------------R 799 (1147)
T ss_pred --------ecCCCCCCCceEEEEecCcHHH-------------------------------------------------H
Confidence 0111100 000011100000 0
Q ss_pred hhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 502 LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
...+.++ ..+.+++||++....++.+.+.|... ++++..+||+|+.++|.+++.+|. +
T Consensus 800 ~~il~el-------------------~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr-~ 859 (1147)
T PRK10689 800 EAILREI-------------------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH-H 859 (1147)
T ss_pred HHHHHHH-------------------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH-h
Confidence 0000000 13568999999999999999999887 788999999999999999999999 7
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCCeEEEEEEeeCC-ChHHHHHHHHHHhHHH
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD-TTDESHWQNLNKSLRC 657 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g-TiEe~i~~~l~~K~~~ 657 (997)
++++| |++|++.+.|||++.+++||+.+++ ++...+.|++||++|.|.+- ++|.+...+ .+.+ ...+++..
T Consensus 860 Gk~~V-LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~~~~~~~----~~~~rl~~ 932 (1147)
T PRK10689 860 QRFNV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHPKAMTT----DAQKRLEA 932 (1147)
T ss_pred cCCCE-EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCCCcccCH----HHHHHHHH
Confidence 78888 8899999999999999999988774 67788999999999988764 344343332 2323 23456677
Q ss_pred HHhhhC---CChhhhhhhchhhhhcccc
Q 001912 658 VSSATN---GKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 658 i~~~l~---g~~~~~~~~~~~~~~~l~~ 682 (997)
+.+..+ |..-++++++.+|.+.+..
T Consensus 933 ~~~~~~lg~gf~~a~~dl~~rg~g~~~g 960 (1147)
T PRK10689 933 IASLEDLGAGFALATHDLEIRGAGELLG 960 (1147)
T ss_pred HHHhcCCcchHHHHHHHHHhcCCccCCC
Confidence 777777 7888999999999998874
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=4.6e-22 Score=247.16 Aligned_cols=323 Identities=18% Similarity=0.191 Sum_probs=205.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
.+|+|+|.+++..++..|.++|++.+||+|||+.+.. ++..+...+++|+|+|+ +|+.|+.+++.++.+. ...+..
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~--g~~v~~ 99 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL--GVRVGI 99 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC--CCEEEE
Confidence 4799999999988777788999999999999999964 44555567789999999 8999999999987543 234555
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---hcCcEEE
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRIVL 351 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~~~~~ll 351 (997)
..|............+|+|+|++.+...... ..-.+.++||+||+|.+-+... ...+..+..... ...++++
T Consensus 100 ~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r---g~~le~il~rl~~~~~~~qii~ 176 (737)
T PRK02362 100 STGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR---GPTLEVTLAKLRRLNPDLQVVA 176 (737)
T ss_pred EeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc---hHHHHHHHHHHHhcCCCCcEEE
Confidence 5554433333334679999999988665432 1124679999999999964321 222333322221 2357899
Q ss_pred EeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhh
Q 001912 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431 (997)
Q Consensus 352 LTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~ 431 (997)
||||.- ++.++... ++...+.... +|+
T Consensus 177 lSATl~--n~~~la~w---l~~~~~~~~~--------------------------------------rpv---------- 203 (737)
T PRK02362 177 LSATIG--NADELADW---LDAELVDSEW--------------------------------------RPI---------- 203 (737)
T ss_pred EcccCC--CHHHHHHH---hCCCcccCCC--------------------------------------CCC----------
Confidence 999973 34554432 2222221100 000
Q ss_pred ccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhcc
Q 001912 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511 (997)
Q Consensus 432 ~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~ 511 (997)
.....+... . ... ... . . ... ... ........+.+.+
T Consensus 204 -----~l~~~v~~~--~-~~~--------~~~-----~----~------~~~------~~~----~~~~~~~~~~~~~-- 240 (737)
T PRK02362 204 -----DLREGVFYG--G-AIH--------FDD-----S----Q------REV------EVP----SKDDTLNLVLDTL-- 240 (737)
T ss_pred -----CCeeeEecC--C-eec--------ccc-----c----c------ccC------CCc----cchHHHHHHHHHH--
Confidence 000000000 0 000 000 0 0 000 000 0000000111111
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------------------------------CC
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------------------------------GI 555 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------------------------------gi 555 (997)
..+.++|||++.+...+.+...|... ..
T Consensus 241 ----------------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 241 ----------------EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ----------------HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 23668899998888776666555432 13
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE----ec-----CCCCccHHhhHHHhhhhc
Q 001912 556 GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF----LE-----LPQSPSLMLQAEDRAHRR 626 (997)
Q Consensus 556 ~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~----~D-----~~wnp~~~~Qa~gRa~Ri 626 (997)
.+..+||+++..+|..+.+.|+ ++.++| |++|.+++.|+|+++.++||. || .+.++..+.|++|||+|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr-~G~i~V-LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFR-DRLIKV-ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHH-cCCCeE-EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 5778999999999999999999 788999 999999999999998887776 66 577889999999999999
Q ss_pred CCCCeEEEEEEeeC
Q 001912 627 GQTSAVNIYIFCAK 640 (997)
Q Consensus 627 GQ~k~V~Vy~Li~~ 640 (997)
|....-.++.++..
T Consensus 383 g~d~~G~~ii~~~~ 396 (737)
T PRK02362 383 GLDPYGEAVLLAKS 396 (737)
T ss_pred CCCCCceEEEEecC
Confidence 98765555555544
No 47
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.3e-23 Score=223.74 Aligned_cols=336 Identities=20% Similarity=0.285 Sum_probs=231.6
Q ss_pred ccChhhHHHHHHHHHhcCC--CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGG--RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g--~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..+||||...+..|.-+|. .+||..++|.|||+..+..+... ...+||+|-+ .-+.||...|..|.. +.+..+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--kK~clvLcts~VSVeQWkqQfk~wst-i~d~~i~ 377 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--KKSCLVLCTSAVSVEQWKQQFKQWST-IQDDQIC 377 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--cccEEEEecCccCHHHHHHHHHhhcc-cCccceE
Confidence 5899999999999886443 57999999999999988776643 4578999998 568999999999975 3334444
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHH----------HHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHR----------LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~----------~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+... ..........|||+||.++.. ..+.+....|+++|+||.|-+ ....++.+..+..
T Consensus 378 rFTsd--~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv-------PA~MFRRVlsiv~- 447 (776)
T KOG1123|consen 378 RFTSD--AKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV-------PAKMFRRVLSIVQ- 447 (776)
T ss_pred Eeecc--ccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc-------hHHHHHHHHHHHH-
Confidence 44332 223334467899999999863 456677889999999999988 2566777777653
Q ss_pred cCcEEEEeccCCCCC--hhHHHHHHHhh-ccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHH
Q 001912 346 VKRIVLLSGTPSLSR--PYDIFHQINML-WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422 (997)
Q Consensus 346 ~~~~llLTGTPi~n~--~~El~~ll~~l-~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~ 422 (997)
+--.|+||||-+..+ ..|| +|| .|.++...+.+..+ .
T Consensus 448 aHcKLGLTATLvREDdKI~DL----NFLIGPKlYEAnWmdL~~---------------------------------k--- 487 (776)
T KOG1123|consen 448 AHCKLGLTATLVREDDKITDL----NFLIGPKLYEANWMDLQK---------------------------------K--- 487 (776)
T ss_pred HHhhccceeEEeecccccccc----ceeecchhhhccHHHHHh---------------------------------C---
Confidence 333599999987543 3332 332 35554332211110 0
Q ss_pred HHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 423 lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
..+..-.-..|+|+|+++-...|... ...... +.+ ...-.|.
T Consensus 488 ---------GhIA~VqCaEVWCpMt~eFy~eYL~~--~t~kr~--------------------------lLy-vMNP~KF 529 (776)
T KOG1123|consen 488 ---------GHIAKVQCAEVWCPMTPEFYREYLRE--NTRKRM--------------------------LLY-VMNPNKF 529 (776)
T ss_pred ---------CceeEEeeeeeecCCCHHHHHHHHhh--hhhhhh--------------------------eee-ecCcchh
Confidence 11222234578999999988777541 111100 000 0011233
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCc
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~ 582 (997)
..+.-++.-| ..+|+|+|||+...-. |.++-.+.|-+ .|.|.|+..+|.++++.|+.++.+
T Consensus 530 raCqfLI~~H--------------E~RgDKiIVFsDnvfA---Lk~YAikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 530 RACQFLIKFH--------------ERRGDKIIVFSDNVFA---LKEYAIKLGKP--FIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred HHHHHHHHHH--------------HhcCCeEEEEeccHHH---HHHHHHHcCCc--eEECCCchhHHHHHHHhcccCCcc
Confidence 3332223222 1469999999987654 44444444554 488999999999999999998888
Q ss_pred eEEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCC----eEEEEEEeeCCChHH
Q 001912 583 KIAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTS----AVNIYIFCAKDTTDE 645 (997)
Q Consensus 583 ~VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k----~V~Vy~Li~~gTiEe 645 (997)
+-++ -+++|.+.++|+.|+.+|-...- -+-.++.||.||+.|.-... +++.|-|+.++|.|-
T Consensus 591 NTIF-lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 591 NTIF-LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred ceEE-EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 8744 46799999999999999998875 46778999999999976333 588999999999765
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=3e-22 Score=244.28 Aligned_cols=306 Identities=19% Similarity=0.174 Sum_probs=203.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.++|..++. |..+|+..++|.|||+....-+. ...+.+|||+|. +|+.++...+... .+ ....+
T Consensus 459 ~sFRp~Q~eaI~aiL~-GrDVLVimPTGSGKSLcYQLPAL--~~~GiTLVISPLiSLmqDQV~~L~~~--GI---~Aa~L 530 (1195)
T PLN03137 459 HSFRPNQREIINATMS-GYDVFVLMPTGGGKSLTYQLPAL--ICPGITLVISPLVSLIQDQIMNLLQA--NI---PAASL 530 (1195)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCCccHHHHHHHHHH--HcCCcEEEEeCHHHHHHHHHHHHHhC--CC---eEEEE
Confidence 4799999999998776 67899999999999998765543 246789999999 8887666665542 11 12222
Q ss_pred ccCCCCc------ccc---cCCCeEEEEehhHHHH---HHHhh---h-hccccEEEeccccccccCCCCCcHHHHHHH--
Q 001912 278 FGHRNNP------VHL---TRFPRVVVISYTMLHR---LRKSM---I-EQDWALLIVDESHHVRCSKRTSEPEEVKAV-- 339 (997)
Q Consensus 278 ~g~~~~~------~~~---~~~~~VvItTy~~l~~---~~~~l---~-~~~~~~VIvDEaH~iKN~~~~~~s~~~~al-- 339 (997)
.+..... ..+ ....+|+++|.+.+.. ....+ . ...+.+|||||||.+-..+... ...++.+
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF-RpdYr~L~~ 609 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF-RPDYQGLGI 609 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch-HHHHHHHHH
Confidence 2221110 011 1357899999998753 12222 1 2347899999999985433211 1123332
Q ss_pred -HHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 340 -LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 340 -~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
.... ....+++||||....-..|+...+.+..+..+...
T Consensus 610 Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--------------------------------------- 649 (1195)
T PLN03137 610 LKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--------------------------------------- 649 (1195)
T ss_pred HHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---------------------------------------
Confidence 2222 23457999999866555555444432211111000
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
+ .-|.....++. .....
T Consensus 650 --f-----------~RpNL~y~Vv~-----k~kk~--------------------------------------------- 666 (1195)
T PLN03137 650 --F-----------NRPNLWYSVVP-----KTKKC--------------------------------------------- 666 (1195)
T ss_pred --c-----------CccceEEEEec-----cchhH---------------------------------------------
Confidence 0 00110001100 00000
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~ 578 (997)
+..+..++.. ...+...||||..+...+.+...|...|+.+..+||+|+.++|..++++|.
T Consensus 667 ---le~L~~~I~~---------------~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~- 727 (1195)
T PLN03137 667 ---LEDIDKFIKE---------------NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWS- 727 (1195)
T ss_pred ---HHHHHHHHHh---------------cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHh-
Confidence 0001112211 012456899999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 579 SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 579 ~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
.++++| |++|.++|.|||++..++||+|++|.+...|.|++||++|.|+...+..|+
T Consensus 728 ~Gei~V-LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 728 KDEINI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred cCCCcE-EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 678888 888999999999999999999999999999999999999999886655543
No 49
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.3e-22 Score=226.00 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=213.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HHHHhh--------CCc-EEEEeCc-chHHHHHHHHHHHCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AACFIS--------AGS-ILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~~~~~--------~gp-~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
..+.|-|..+.-.++. |..++...++|+|||+.-+.= +.++.. .+| +||++|+ -|..|-.+++.++..
T Consensus 112 ~~PtpIQaq~wp~~l~-GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~ 190 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALS-GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK 190 (519)
T ss_pred CCCchhhhcccceecc-CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC
Confidence 4678888888777776 677898999999999987642 233222 245 8999999 899999999999987
Q ss_pred CCCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
.+....+.++.|.... ...+.+..+|+|+|...+..+.+. +.-.+..++|+|||.++-... ...+ .+.+..-.
T Consensus 191 ~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG--Fe~q-I~~Il~~i 267 (519)
T KOG0331|consen 191 SLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG--FEPQ-IRKILSQI 267 (519)
T ss_pred CCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc--cHHH-HHHHHHhc
Confidence 7654445455544332 234556789999999999876553 333578999999999997644 2233 33333333
Q ss_pred -hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHH
Q 001912 344 -AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422 (997)
Q Consensus 344 -~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~ 422 (997)
...+..++.|+|- |. +...+...|..
T Consensus 268 ~~~~rQtlm~saTw----------------p~----~v~~lA~~fl~--------------------------------- 294 (519)
T KOG0331|consen 268 PRPDRQTLMFSATW----------------PK----EVRQLAEDFLN--------------------------------- 294 (519)
T ss_pred CCCcccEEEEeeec----------------cH----HHHHHHHHHhc---------------------------------
Confidence 3334578888882 11 11122222211
Q ss_pred HHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 423 IRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 423 lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
.|- ...+... . +...- ..+ .++...-...+|.
T Consensus 295 -----------~~~-~i~ig~~--~--~~~a~-~~i-------------------------------~qive~~~~~~K~ 326 (519)
T KOG0331|consen 295 -----------NPI-QINVGNK--K--ELKAN-HNI-------------------------------RQIVEVCDETAKL 326 (519)
T ss_pred -----------Cce-EEEecch--h--hhhhh-cch-------------------------------hhhhhhcCHHHHH
Confidence 000 0000000 0 00000 000 0000000012222
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCc
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~ 582 (997)
..+.+.+.... ...+.|+||||+....++.|...|...+++...|||..+..+|+.+++.|+ +|+.
T Consensus 327 ~~l~~lL~~~~-------------~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr-eG~~ 392 (519)
T KOG0331|consen 327 RKLGKLLEDIS-------------SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR-EGKS 392 (519)
T ss_pred HHHHHHHHHHh-------------ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc-cCCc
Confidence 22333333211 145789999999999999999999999999999999999999999999999 7788
Q ss_pred eEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 583 KIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 583 ~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
.| |++|++++.|||+.+.++||+||+|-|...|.+|+||.+|-|++-..
T Consensus 393 ~v-LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 393 PV-LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ce-EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 88 99999999999999999999999999999999999999998876543
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=4.1e-22 Score=251.36 Aligned_cols=356 Identities=19% Similarity=0.169 Sum_probs=201.7
Q ss_pred ccChhhHHHHHHHHH---hc-CCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 199 DVILPFQLEGVRFGL---RR-GGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l---~~-~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
..|||||.++|..+. .. ..++||.+.+|+|||+++++++..+... .++|||||. .|+.||.++|..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 469999999997654 22 3478999999999999999988776543 479999998 899999999998743211
Q ss_pred -C-ceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh-------hhhccccEEEeccccccccCCCCC----------
Q 001912 271 -P-ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS-------MIEQDWALLIVDESHHVRCSKRTS---------- 331 (997)
Q Consensus 271 -~-~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~-------l~~~~~~~VIvDEaH~iKN~~~~~---------- 331 (997)
. ..+..+.+-.+.. ......|+|+|++.+.+.... +.-..|++|||||||+........
T Consensus 492 ~~~~~i~~i~~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 0 0111111111111 123568999999998764211 223578999999999952110000
Q ss_pred --cHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchh--HHHHHHhhccccccccccchhhhhhhh
Q 001912 332 --EPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK--YDFAKTYCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 332 --~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~--~~F~~~~~~~~~~~~~~~~~~~~~~~~ 407 (997)
....++.++... -..+|+|||||..+. . ++||... |.+.
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t-~-----------~~FG~pv~~Ysl~----------------------- 612 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHT-T-----------EIFGEPVYTYSYR----------------------- 612 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccch-h-----------HHhCCeeEEeeHH-----------------------
Confidence 023455555543 246899999998532 1 1222110 0110
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEE----EecCh-hHHHHHHHHHHHHhhhccccCCCCCCCCCCcccc
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIR----LLLKR-SEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~----~~l~~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (997)
..+...++ ....||....... +.... ++...|......+... . ..++
T Consensus 613 -------eAI~DG~L--------v~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~-------~---l~d~--- 664 (1123)
T PRK11448 613 -------EAVIDGYL--------IDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLA-------T---LEDE--- 664 (1123)
T ss_pred -------HHHhcCCc--------ccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhc-------c---CcHH---
Confidence 01111110 0001222211100 00000 0111111100000000 0 0000
Q ss_pred chhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------CC-
Q 001912 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------GI- 555 (997)
Q Consensus 483 ~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------gi- 555 (997)
.. .....+............+.+-+..+ + ....+.|+||||....+++.+.+.|... ++
T Consensus 665 ~~--~~~~~~~~~vi~~~~~~~i~~~l~~~--l----------~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~ 730 (1123)
T PRK11448 665 VD--FEVEDFNRRVITESFNRVVCEELAKY--L----------DPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVE 730 (1123)
T ss_pred Hh--hhHHHHHHHHhhHHHHHHHHHHHHHH--H----------hccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcC
Confidence 00 00000000000000011111111111 0 0012479999999999999888887652 22
Q ss_pred --eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCC---CC
Q 001912 556 --GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ---TS 630 (997)
Q Consensus 556 --~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ---~k 630 (997)
.+..|+|+++ ++++++++|.+ +....+++|++..++|+|++..++|||+.|+-++..+.|++||+.|..- +.
T Consensus 731 ~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~ 807 (1123)
T PRK11448 731 DDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKT 807 (1123)
T ss_pred ccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCc
Confidence 3567999984 67889999985 4443458999999999999999999999999999999999999999865 45
Q ss_pred eEEEEEEe
Q 001912 631 AVNIYIFC 638 (997)
Q Consensus 631 ~V~Vy~Li 638 (997)
...||.++
T Consensus 808 ~f~I~D~v 815 (1123)
T PRK11448 808 HFRIFDAV 815 (1123)
T ss_pred eEEEEehH
Confidence 56677654
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=3.3e-21 Score=237.14 Aligned_cols=333 Identities=17% Similarity=0.180 Sum_probs=210.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-Hhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..|+|||.+++..++. |.++|+.-+||+|||+..+.-+.. +.. ...+|||+|+ .|..|-..++.++.. ....+
T Consensus 35 ~~p~~~Q~~ai~~il~-G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~--~~i~v 111 (742)
T TIGR03817 35 HRPWQHQARAAELAHA-GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTL--RGVRP 111 (742)
T ss_pred CcCCHHHHHHHHHHHC-CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhcc--CCeEE
Confidence 4799999999988765 778999999999999998654433 322 2358999999 899999999998862 12344
Q ss_pred EEEccCCCCc--ccccCCCeEEEEehhHHHHHHH-------hhhhccccEEEeccccccccCCCCCcHHH---HHHHHHH
Q 001912 275 HLVFGHRNNP--VHLTRFPRVVVISYTMLHRLRK-------SMIEQDWALLIVDESHHVRCSKRTSEPEE---VKAVLDV 342 (997)
Q Consensus 275 ~~~~g~~~~~--~~~~~~~~VvItTy~~l~~~~~-------~l~~~~~~~VIvDEaH~iKN~~~~~~s~~---~~al~~l 342 (997)
..+.|..... ..+....+|+|+|++++....- .+ -.+.++||+||+|.+... ..+.. ...+..+
T Consensus 112 ~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~-l~~l~~vViDEah~~~g~---fg~~~~~il~rL~ri 187 (742)
T TIGR03817 112 ATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARF-LRRLRYVVIDECHSYRGV---FGSHVALVLRRLRRL 187 (742)
T ss_pred EEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHH-HhcCCEEEEeChhhccCc---cHHHHHHHHHHHHHH
Confidence 4555543221 2234457999999999864210 11 246799999999998631 11222 2223233
Q ss_pred Hh---hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 343 AA---KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 343 ~~---~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
.. ..++.+++|||.- ++.++... + ++... ..+.
T Consensus 188 ~~~~g~~~q~i~~SATi~--n~~~~~~~---l----~g~~~----------~~i~------------------------- 223 (742)
T TIGR03817 188 CARYGASPVFVLASATTA--DPAAAASR---L----IGAPV----------VAVT------------------------- 223 (742)
T ss_pred HHhcCCCCEEEEEecCCC--CHHHHHHH---H----cCCCe----------EEEC-------------------------
Confidence 21 2356899999953 33333211 1 00000 0000
Q ss_pred HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 420 ~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
....|............... ... . .. . ..+.. ...
T Consensus 224 -----------~~~~~~~~~~~~~~~p~~~~----------~~~--~--------~~----~------~~r~~----~~~ 258 (742)
T TIGR03817 224 -----------EDGSPRGARTVALWEPPLTE----------LTG--E--------NG----A------PVRRS----ASA 258 (742)
T ss_pred -----------CCCCCcCceEEEEecCCccc----------ccc--c--------cc----c------ccccc----hHH
Confidence 00011111111111100000 000 0 00 0 00000 000
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHH
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--------GIGFVRIDGNTLPRDRQS 571 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--------gi~~~~idG~~s~~eR~~ 571 (997)
.+...+...+ ..+.++|||++.+...+.|...|... +.++..+||+++.++|.+
T Consensus 259 ~~~~~l~~l~------------------~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ 320 (742)
T TIGR03817 259 EAADLLADLV------------------AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRE 320 (742)
T ss_pred HHHHHHHHHH------------------HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHH
Confidence 1111122211 23579999999999999999888763 567788999999999999
Q ss_pred HHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHH
Q 001912 572 AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 572 ~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~ 649 (997)
+.++|+ ++++++ |++|.+++.|||+.+.++||+++.|-+...+.|++||++|.|+.-- ++.++..+..|..++.
T Consensus 321 ie~~f~-~G~i~v-LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 321 LERALR-DGELLG-VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHH-cCCceE-EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999 788888 9999999999999999999999999999999999999999987543 3445555667766544
No 52
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.5e-21 Score=206.83 Aligned_cols=325 Identities=18% Similarity=0.198 Sum_probs=220.8
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHhhCC---cEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAG---SILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~~~g---p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
...+-+-|.+++-.++. |+.+|.+.|+|+|||..-+. ++..++..- .+||++|+ .|..|..+.|+......- .
T Consensus 81 ~~~PT~IQ~~aiP~~L~-g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig-l 158 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALG-GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG-L 158 (476)
T ss_pred cCCCchhhhhhcchhhC-CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC-e
Confidence 45677899999999887 67799999999999998654 555555432 37999999 788888888888755432 3
Q ss_pred eEEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc
Q 001912 273 DIHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV 346 (997)
Q Consensus 273 ~i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~ 346 (997)
.+.++.|+-+. ...+.+.++|+|+|.+.+...... +.-.+..++|+|||.++-|.... .....+++.....
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~---~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFE---EELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhH---HHHHHHHHhcCcc
Confidence 33344343322 223456789999999999887652 44456789999999999874422 2233444554455
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
++.++.|||--.+ ...|. . ..++ ++..+ ....++..+ ..+
T Consensus 236 rqt~LfsATMt~k-v~kL~---r-asl~--------------~p~~v---------------~~s~ky~tv------~~l 275 (476)
T KOG0330|consen 236 RQTFLFSATMTKK-VRKLQ---R-ASLD--------------NPVKV---------------AVSSKYQTV------DHL 275 (476)
T ss_pred ceEEEEEeecchh-hHHHH---h-hccC--------------CCeEE---------------eccchhcch------HHh
Confidence 6679999995322 22221 0 0000 00000 000000000 000
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
+ ...+++.... |...+.
T Consensus 276 k-----------Q~ylfv~~k~----------------------------------------------------K~~yLV 292 (476)
T KOG0330|consen 276 K-----------QTYLFVPGKD----------------------------------------------------KDTYLV 292 (476)
T ss_pred h-----------hheEeccccc----------------------------------------------------cchhHH
Confidence 0 0011111000 000011
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
.++. ...|..+||||+.-.+.+.+.-+|...|+....+||.|+...|..+++.|+ .+...| |
T Consensus 293 ~ll~----------------e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk-~~~r~i-L 354 (476)
T KOG0330|consen 293 YLLN----------------ELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK-AGARSI-L 354 (476)
T ss_pred HHHH----------------hhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh-ccCCcE-E
Confidence 1111 123578999999999999999999999999999999999999999999999 677777 9
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHH
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
++|++++.|||++.+++||+||.|-+-..|++|.||..|.| ++-.+..||+. .|-..+++++
T Consensus 355 v~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 355 VCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred EecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHH
Confidence 99999999999999999999999999999999999999999 56667778887 5555555543
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=6.5e-20 Score=226.38 Aligned_cols=312 Identities=19% Similarity=0.248 Sum_probs=195.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.|+|+|.+++..+ ..|.++|++.+||+|||+++...+. .+...+++++|+|. +|+.|+.+++.++... ...+...
T Consensus 22 ~l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~--g~~v~~~ 98 (674)
T PRK01172 22 ELYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL--GMRVKIS 98 (674)
T ss_pred CCCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc--CCeEEEE
Confidence 5899999999876 4477899999999999999875544 34456789999999 8999999999987532 2234444
Q ss_pred ccCCCCcccccCCCeEEEEehhHHHHHHHhh--hhccccEEEeccccccccCCCCCcHHHHHHHHHHH---hhcCcEEEE
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTMLHRLRKSM--IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA---AKVKRIVLL 352 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l--~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~---~~~~~~llL 352 (997)
.|............+|+|+|++.+....... .-.++++||+||+|.+.+... ......+.... ....++++|
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~r---g~~le~ll~~~~~~~~~~riI~l 175 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDR---GPTLETVLSSARYVNPDARILAL 175 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCc---cHHHHHHHHHHHhcCcCCcEEEE
Confidence 4544333333346799999999876543321 124689999999999964322 22233333322 224578999
Q ss_pred eccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhc
Q 001912 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432 (997)
Q Consensus 353 TGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~ 432 (997)
|||+. +..++- ++++...+.... .
T Consensus 176 SATl~--n~~~la---~wl~~~~~~~~~---------------------------------------------------r 199 (674)
T PRK01172 176 SATVS--NANELA---QWLNASLIKSNF---------------------------------------------------R 199 (674)
T ss_pred eCccC--CHHHHH---HHhCCCccCCCC---------------------------------------------------C
Confidence 99973 233332 222211111000 0
Q ss_pred cCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccC
Q 001912 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIH 512 (997)
Q Consensus 433 ~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~ 512 (997)
..|-. ..++... +. + . . ... . ... .+...+..
T Consensus 200 ~vpl~-~~i~~~~----~~--~---~---~--------------~~~-~--------~~~-----------~~~~~i~~- 231 (674)
T PRK01172 200 PVPLK-LGILYRK----RL--I---L---D--------------GYE-R--------SQV-----------DINSLIKE- 231 (674)
T ss_pred CCCeE-EEEEecC----ee--e---e---c--------------ccc-c--------ccc-----------cHHHHHHH-
Confidence 00000 0000000 00 0 0 0 000 0 000 00000110
Q ss_pred ccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc-------------------------CCeEEEEeCCCCHH
Q 001912 513 PVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-------------------------GIGFVRIDGNTLPR 567 (997)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~-------------------------gi~~~~idG~~s~~ 567 (997)
....++++|||++.+...+.+...|... ..++..+||+++.+
T Consensus 232 -------------~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~ 298 (674)
T PRK01172 232 -------------TVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNE 298 (674)
T ss_pred -------------HHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHH
Confidence 0124668899999888777777666442 12366789999999
Q ss_pred HHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecC---------CCCccHHhhHHHhhhhcCCCCeEEEEEE
Q 001912 568 DRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL---------PQSPSLMLQAEDRAHRRGQTSAVNIYIF 637 (997)
Q Consensus 568 eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~---------~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~L 637 (997)
+|..+.+.|+ ++.++| |++|.+++.|+|+++ .+||+.|. ++++..+.|++|||+|.|....-..+.+
T Consensus 299 eR~~ve~~f~-~g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 299 QRRFIEEMFR-NRYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHHHHHHH-cCCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 9999999999 788898 999999999999996 57777664 3577889999999999997655333333
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=2.9e-20 Score=233.22 Aligned_cols=326 Identities=19% Similarity=0.154 Sum_probs=197.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhh---------CCcEEEEeCc-chHHHHHHHHH----
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFIS---------AGSILVVCPA-ILRLSWAEELE---- 263 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~---------~gp~LIV~P~-sL~~qW~~Ei~---- 263 (997)
..|+|+|.+++..++. |.++|+..+||+|||+.++..+ ..+.. ...+|+|+|+ +|..|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~ 109 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLT 109 (876)
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3699999999988655 7789999999999999987543 33321 1138999999 88888776443
Q ss_pred ---HHC----CCCCCceEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--h--hhccccEEEeccccccccCCC
Q 001912 264 ---RWL----PFCLPADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--M--IEQDWALLIVDESHHVRCSKR 329 (997)
Q Consensus 264 ---k~~----p~~~~~~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l--~~~~~~~VIvDEaH~iKN~~~ 329 (997)
+++ .......+.+..|...... .+...++|+|||++.+...... + .-.+.++|||||+|.+-+...
T Consensus 110 ~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~R 189 (876)
T PRK13767 110 EIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKR 189 (876)
T ss_pred HHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCcc
Confidence 333 1111223444445433221 1234679999999998654321 1 114678999999999964321
Q ss_pred CCcHHH---HHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhh
Q 001912 330 TSEPEE---VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406 (997)
Q Consensus 330 ~~~s~~---~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 406 (997)
.... ...+..+.....++++||||.- ++.++.. ++......... .
T Consensus 190 --G~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~---~L~~~~~~~~~----------r--------------- 237 (876)
T PRK13767 190 --GVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK---FLVGYEDDGEP----------R--------------- 237 (876)
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH---HhcCccccCCC----------C---------------
Confidence 1111 1222333223457899999963 2333332 22111000000 0
Q ss_pred hccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhh
Q 001912 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486 (997)
Q Consensus 407 ~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (997)
++.+ +...........+.+... +. +.. . .
T Consensus 238 -------------~~~i------v~~~~~k~~~i~v~~p~~--~l--~~~-------------------~-~-------- 266 (876)
T PRK13767 238 -------------DCEI------VDARFVKPFDIKVISPVD--DL--IHT-------------------P-A-------- 266 (876)
T ss_pred -------------ceEE------EccCCCccceEEEeccCc--cc--ccc-------------------c-c--------
Confidence 0000 000000000000000000 00 000 0 0
Q ss_pred hcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------CCeEEEE
Q 001912 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------GIGFVRI 560 (997)
Q Consensus 487 ~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------gi~~~~i 560 (997)
... .......+.+.+ ..+.++||||+.+..++.+...|... +..+..+
T Consensus 267 ---~~~-----~~~l~~~L~~~i------------------~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~h 320 (876)
T PRK13767 267 ---EEI-----SEALYETLHELI------------------KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAH 320 (876)
T ss_pred ---chh-----HHHHHHHHHHHH------------------hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeee
Confidence 000 000001111111 23568999999999999999998763 4678889
Q ss_pred eCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcC-CCCeEEEEE
Q 001912 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-QTSAVNIYI 636 (997)
Q Consensus 561 dG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiG-Q~k~V~Vy~ 636 (997)
||+++.++|..+.+.|+ ++.++| |++|.+++.|||+...++||++++|.+...+.|++||++|.+ ....-.|+-
T Consensus 321 Hg~ls~~~R~~ve~~fk-~G~i~v-LVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 321 HSSLSREVRLEVEEKLK-RGELKV-VVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred eCCCCHHHHHHHHHHHH-cCCCeE-EEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999 778888 889999999999999999999999999999999999999864 444444443
No 55
>PRK00254 ski2-like helicase; Provisional
Probab=99.86 E-value=1.8e-19 Score=223.50 Aligned_cols=318 Identities=15% Similarity=0.168 Sum_probs=200.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHH-HHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI-AIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqai-al~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|+|+|.+++.-.+..|.++|++.++|+|||+.+. +++..+. ..+++|+|+|. +|+.|+.+++.+|... ...+.
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~--g~~v~ 99 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKL--GLRVA 99 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhc--CCEEE
Confidence 479999999998666668899999999999999994 4454444 35689999999 8999999999887432 23444
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
...|.......+....+|+|+|++.+...... ..-.+.++||+||+|.+-+... ......+........++++||
T Consensus 100 ~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r---g~~le~il~~l~~~~qiI~lS 176 (720)
T PRK00254 100 MTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR---GATLEMILTHMLGRAQILGLS 176 (720)
T ss_pred EEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc---hHHHHHHHHhcCcCCcEEEEE
Confidence 45554433333344679999999988665431 1124689999999999954221 223333443333457899999
Q ss_pred ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433 (997)
Q Consensus 354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~ 433 (997)
||.- ++.++... +....+.... +|+
T Consensus 177 ATl~--n~~~la~w---l~~~~~~~~~--------------------------------------rpv------------ 201 (720)
T PRK00254 177 ATVG--NAEELAEW---LNAELVVSDW--------------------------------------RPV------------ 201 (720)
T ss_pred ccCC--CHHHHHHH---hCCccccCCC--------------------------------------CCC------------
Confidence 9974 24554432 2211111100 000
Q ss_pred CCCceEEEEEE----ecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhh
Q 001912 434 LPPKRRQIIRL----LLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509 (997)
Q Consensus 434 LP~k~~~~i~~----~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l 509 (997)
|- +..+.. ....... .... ......+.+.+
T Consensus 202 -~l--~~~~~~~~~~~~~~~~~--------------------------------------~~~~-----~~~~~~~~~~i 235 (720)
T PRK00254 202 -KL--RKGVFYQGFLFWEDGKI--------------------------------------ERFP-----NSWESLVYDAV 235 (720)
T ss_pred -cc--eeeEecCCeeeccCcch--------------------------------------hcch-----HHHHHHHHHHH
Confidence 00 000000 0000000 0000 00000011111
Q ss_pred ccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHH---------------------------------cCCe
Q 001912 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE---------------------------------KGIG 556 (997)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~---------------------------------~gi~ 556 (997)
..+.++|||++.+...+.+...|.. ...+
T Consensus 236 ------------------~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 236 ------------------KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred ------------------HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 2356899999888766554433321 1235
Q ss_pred EEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE-------ecCCC-CccHHhhHHHhhhhcCC
Q 001912 557 FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF-------LELPQ-SPSLMLQAEDRAHRRGQ 628 (997)
Q Consensus 557 ~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~-------~D~~w-np~~~~Qa~gRa~RiGQ 628 (997)
+..+||+++.++|..+.+.|+ +|.++| |++|.+++.|+|+++.++||. ++.+. ....+.|++|||+|.|.
T Consensus 298 v~~hHagl~~~eR~~ve~~F~-~G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFR-EGLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHH-CCCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 788999999999999999999 788998 999999999999998877774 23222 34578999999999987
Q ss_pred CCeEEEEEEeeCCC
Q 001912 629 TSAVNIYIFCAKDT 642 (997)
Q Consensus 629 ~k~V~Vy~Li~~gT 642 (997)
.+.-.++.++....
T Consensus 376 d~~G~~ii~~~~~~ 389 (720)
T PRK00254 376 DEVGEAIIVATTEE 389 (720)
T ss_pred CCCceEEEEecCcc
Confidence 76656666665543
No 56
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9e-20 Score=216.30 Aligned_cols=332 Identities=19% Similarity=0.269 Sum_probs=223.3
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHh--hCC--c-EEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFI--SAG--S-ILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~--~~g--p-~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
...+.|.|..++..++. |..+|....+|+|||+.-+. ++..+. ... + +||++|+ .|..|-.+++.++.....
T Consensus 49 f~~pt~IQ~~~IP~~l~-g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~ 127 (513)
T COG0513 49 FEEPTPIQLAAIPLILA-GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLG 127 (513)
T ss_pred CCCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcC
Confidence 34778999999998887 57799999999999987654 333332 111 2 8999999 899999999999876542
Q ss_pred CceEEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 271 PADIHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 271 ~~~i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
...+..+.|+... ...+....+|||.|+..+..+... +...+..++|+|||.++-+.+ -......+......
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G---f~~~i~~I~~~~p~ 204 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG---FIDDIEKILKALPP 204 (513)
T ss_pred CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC---CHHHHHHHHHhCCc
Confidence 2223344443322 223344589999999998865442 445678999999999998753 23334555555444
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
....++.|||--. ... .+...|... |..+..
T Consensus 205 ~~qtllfSAT~~~-~i~-------------------~l~~~~l~~-----------------------------p~~i~v 235 (513)
T COG0513 205 DRQTLLFSATMPD-DIR-------------------ELARRYLND-----------------------------PVEIEV 235 (513)
T ss_pred ccEEEEEecCCCH-HHH-------------------HHHHHHccC-----------------------------CcEEEE
Confidence 5678999999532 111 122222110 000000
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
-.... ..-+++..+.+..--+.. .|...+
T Consensus 236 ~~~~~-~~~~~~i~q~~~~v~~~~--------------------------------------------------~k~~~L 264 (513)
T COG0513 236 SVEKL-ERTLKKIKQFYLEVESEE--------------------------------------------------EKLELL 264 (513)
T ss_pred ccccc-cccccCceEEEEEeCCHH--------------------------------------------------HHHHHH
Confidence 00000 001122222221110000 122223
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEE
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~Vl 585 (997)
...+.. ....++|||+.....++.|...|...|+++..|||+++.++|.+.++.|+ +++..|
T Consensus 265 ~~ll~~----------------~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~-~g~~~v- 326 (513)
T COG0513 265 LKLLKD----------------EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK-DGELRV- 326 (513)
T ss_pred HHHHhc----------------CCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH-cCCCCE-
Confidence 333322 12337999999999999999999999999999999999999999999999 888999
Q ss_pred EEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 586 LlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
|++|++++.|||+...++||+||+|.++..|.+|+||.+|.|.+ -..+.|++. .-|...+..+.+.
T Consensus 327 LVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 327 LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred EEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999943 344455554 2255555555554
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=199.07 Aligned_cols=322 Identities=19% Similarity=0.248 Sum_probs=219.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHH-HHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCC-CceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA-IAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCL-PADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqa-ial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~-~~~i 274 (997)
..|.|-|.-+|..++-.|.+.++...+++|||+++ +|-+..++. .+++|.+||. .|..|-.++|.+-+..+. ...+
T Consensus 215 ~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglkvai 294 (830)
T COG1202 215 EELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAI 294 (830)
T ss_pred ceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEE
Confidence 48999999999998887889999999999999987 455555555 6789999999 777787888877654332 2334
Q ss_pred EEEccCCCCc-----ccccCCCeEEEEehhHHHHHHHh-hhhccccEEEeccccccccCCCCCc-HHHHHHHHHHHhhcC
Q 001912 275 HLVFGHRNNP-----VHLTRFPRVVVISYTMLHRLRKS-MIEQDWALLIVDESHHVRCSKRTSE-PEEVKAVLDVAAKVK 347 (997)
Q Consensus 275 ~~~~g~~~~~-----~~~~~~~~VvItTy~~l~~~~~~-l~~~~~~~VIvDEaH~iKN~~~~~~-s~~~~al~~l~~~~~ 347 (997)
.+..+.-+.. .....+.||+|.||+-+...... -.-.+.+.|||||.|.+.....++. .-.+..+..+.. ..
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~-~A 373 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP-GA 373 (830)
T ss_pred EechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCC-CC
Confidence 4443322222 12334679999999998765544 2225789999999999976332221 112344444442 34
Q ss_pred cEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHh
Q 001912 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427 (997)
Q Consensus 348 ~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k 427 (997)
..+.||||- .+|.|+...+.. .+.
T Consensus 374 Q~i~LSATV--gNp~elA~~l~a---~lV--------------------------------------------------- 397 (830)
T COG1202 374 QFIYLSATV--GNPEELAKKLGA---KLV--------------------------------------------------- 397 (830)
T ss_pred eEEEEEeec--CChHHHHHHhCC---eeE---------------------------------------------------
Confidence 579999995 456666544431 000
Q ss_pred hhhhccCC-CceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 428 QHLLVQLP-PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 428 ~~v~~~LP-~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
....-| |..++++.+.=..+-......+. . .
T Consensus 398 --~y~~RPVplErHlvf~~~e~eK~~ii~~L~----k------------------------------------------~ 429 (830)
T COG1202 398 --LYDERPVPLERHLVFARNESEKWDIIARLV----K------------------------------------------R 429 (830)
T ss_pred --eecCCCCChhHeeeeecCchHHHHHHHHHH----H------------------------------------------H
Confidence 001122 12334444321111111111111 0 0
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
+|.... ...-...+|||++++.-...|.++|..+|++..-+|++++..+|+.+-..|. +++..+ +
T Consensus 430 E~~~~s-------------skg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~-~q~l~~-V 494 (830)
T COG1202 430 EFSTES-------------SKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA-AQELAA-V 494 (830)
T ss_pred HHhhhh-------------ccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh-cCCcce-E
Confidence 111100 0122457999999999999999999999999999999999999999999999 677888 8
Q ss_pred EeccccccccCcccccEEEEecC-----CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 587 IGITAGGVGLDFSSAQNVVFLEL-----PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~-----~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
++|.|.|.|+|+++ +.|||-.+ |.+|..++|..|||+|.|-+..-.||.++-.|
T Consensus 495 VTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 495 VTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred eehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999994 55666433 67999999999999999998877788887654
No 58
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.80 E-value=4.6e-18 Score=187.76 Aligned_cols=332 Identities=16% Similarity=0.180 Sum_probs=213.9
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHH----HHHHHH--------hhCCc-EEEEeCc-chHHHHHHHHHHH
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI----AIAACF--------ISAGS-ILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqai----al~~~~--------~~~gp-~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
..-|-|+.++--+++ ++..|...|+|+|||..-+ ..+..+ ...|| .+|++|+ -|.+|-.+|-.+|
T Consensus 267 eptpIqR~aipl~lQ-~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ-NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCchHHHhhccchhc-cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 567899999987776 5678999999999994322 122211 12455 7999999 8899999999999
Q ss_pred CCCCCCceEEEEccCCCCcc--cccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHH
Q 001912 266 LPFCLPADIHLVFGHRNNPV--HLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD 341 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~~~~~--~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~ 341 (997)
...+-...+.++.|.+-.-. .+....+|||.|+..|..... .|...+..+||+|||.++-...... . ...++.
T Consensus 346 ~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~--d-v~~iL~ 422 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP--D-VQKILE 422 (673)
T ss_pred cccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH--H-HHHHHH
Confidence 76555555666666553322 456678999999998876433 3445788999999999986543222 1 111111
Q ss_pred HHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHH
Q 001912 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421 (997)
Q Consensus 342 l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~ 421 (997)
.-|..|- .|+- . + ......+...+
T Consensus 423 ------------~mPssn~-----------k~~t----d-e------------------------~~~~~~~~~~~---- 446 (673)
T KOG0333|consen 423 ------------QMPSSNA-----------KPDT----D-E------------------------KEGEERVRKNF---- 446 (673)
T ss_pred ------------hCCcccc-----------CCCc----c-c------------------------hhhHHHHHhhc----
Confidence 1122221 0110 0 0 00000000000
Q ss_pred HHHHHhhhhhccCCCceEEEEEEe--cChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 422 MIRRLKQHLLVQLPPKRRQIIRLL--LKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 422 ~lRR~k~~v~~~LP~k~~~~i~~~--l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
.-..+.++.+.+. |++.-....+.++.... -.... ...+...++.+..+.....
T Consensus 447 -----------~~~k~yrqT~mftatm~p~verlar~ylr~pv----~vtig---------~~gk~~~rveQ~v~m~~ed 502 (673)
T KOG0333|consen 447 -----------SSSKKYRQTVMFTATMPPAVERLARSYLRRPV----VVTIG---------SAGKPTPRVEQKVEMVSED 502 (673)
T ss_pred -----------ccccceeEEEEEecCCChHHHHHHHHHhhCCe----EEEec---------cCCCCccchheEEEEecch
Confidence 0011223333332 33333333222221110 00000 0011112223333333445
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
.|...+.+.+.+. ....+|||.+....+|+|.+.|.+.|+.+.++||+.+.++|+.++..|+ .
T Consensus 503 ~k~kkL~eil~~~----------------~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr-~ 565 (673)
T KOG0333|consen 503 EKRKKLIEILESN----------------FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR-E 565 (673)
T ss_pred HHHHHHHHHHHhC----------------CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH-h
Confidence 5566666655542 3568999999999999999999999999999999999999999999999 5
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEE
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVN 633 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~ 633 (997)
+...| |++|.++|.|||+++.++||.||...+-..|.++|||.+|-|+.-.+.
T Consensus 566 ~t~dI-lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 566 GTGDI-LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred cCCCE-EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 56667 899999999999999999999999999999999999999999875543
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.80 E-value=1.1e-17 Score=191.75 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=90.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHH----HHHHhccCCCceEEEEeccccccccCccccc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGI--GFVRIDGNTLPRDRQS----AVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ 602 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi--~~~~idG~~s~~eR~~----~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~ 602 (997)
.+.++|||++....++.+.+.|.+.+. .+..+||+++..+|.+ +++.|. ++..+| |++|.+++.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~-~~~~~i-lvaT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMK-KNEKFV-IVATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhc-CCCCeE-EEECcchhceecc-CCC
Confidence 467999999999999999999988766 4899999999999976 488998 567777 8899999999999 488
Q ss_pred EEEEecCCCCccHHhhHHHhhhhcCCCC----eEEEEEEeeCC
Q 001912 603 NVVFLELPQSPSLMLQAEDRAHRRGQTS----AVNIYIFCAKD 641 (997)
Q Consensus 603 ~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k----~V~Vy~Li~~g 641 (997)
+||.++.+ +..+.|++||++|.|... .|+||.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88888765 789999999999999764 45555554444
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=4.7e-18 Score=197.47 Aligned_cols=306 Identities=20% Similarity=0.222 Sum_probs=214.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
...||=|.++|..++. +.++|.-.+||.||++..-.-+. +..|.+|||.|. ||+....+.+...- . .+..+
T Consensus 16 ~~FR~gQ~evI~~~l~-g~d~lvvmPTGgGKSlCyQiPAl--l~~G~TLVVSPLiSLM~DQV~~l~~~G--i---~A~~l 87 (590)
T COG0514 16 ASFRPGQQEIIDALLS-GKDTLVVMPTGGGKSLCYQIPAL--LLEGLTLVVSPLISLMKDQVDQLEAAG--I---RAAYL 87 (590)
T ss_pred cccCCCHHHHHHHHHc-CCcEEEEccCCCCcchHhhhHHH--hcCCCEEEECchHHHHHHHHHHHHHcC--c---eeehh
Confidence 4689999999999887 57899999999999997654333 338999999999 99999999888743 1 11111
Q ss_pred ccC--CCCccc----c-cCCCeEEEEehhHHHH--HHHhhhhccccEEEeccccccccCC--CCCcHHHHHHHHHHHhhc
Q 001912 278 FGH--RNNPVH----L-TRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSK--RTSEPEEVKAVLDVAAKV 346 (997)
Q Consensus 278 ~g~--~~~~~~----~-~~~~~VvItTy~~l~~--~~~~l~~~~~~~VIvDEaH~iKN~~--~~~~s~~~~al~~l~~~~ 346 (997)
.+. ...+.. + ....+++..+++.+.. ..+.+...+..+++|||||.+-.++ ..++-.+...+..... .
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~ 166 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-N 166 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-C
Confidence 111 111111 1 1235899999999875 3456667899999999999997654 2333333333333332 2
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
.-+++||||--.---.|+-.+|..-.+..|-...
T Consensus 167 ~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf---------------------------------------------- 200 (590)
T COG0514 167 PPVLALTATATPRVRDDIREQLGLQDANIFRGSF---------------------------------------------- 200 (590)
T ss_pred CCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC----------------------------------------------
Confidence 3479999997666666666666544443332211
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
+.|.....++... +. ..++.
T Consensus 201 ------dRpNi~~~v~~~~-~~--------------------------------------------------~~q~~--- 220 (590)
T COG0514 201 ------DRPNLALKVVEKG-EP--------------------------------------------------SDQLA--- 220 (590)
T ss_pred ------CCchhhhhhhhcc-cH--------------------------------------------------HHHHH---
Confidence 0000000000000 00 00000
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
|+.+ . ....+...||||..+...+.+.++|...|+....+||+++.++|+.+-++|. ++++.| +
T Consensus 221 -fi~~--~-----------~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~-~~~~~i-i 284 (590)
T COG0514 221 -FLAT--V-----------LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL-NDEIKV-M 284 (590)
T ss_pred -HHHh--h-----------ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh-cCCCcE-E
Confidence 1221 0 1133556899999999999999999999999999999999999999999999 777888 8
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
++|.|.|.|||=++...|||||+|-+...|.|-+|||+|.|......++
T Consensus 285 VAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 285 VATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred EEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 9999999999999999999999999999999999999999987765443
No 61
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=1.9e-17 Score=202.28 Aligned_cols=359 Identities=14% Similarity=0.085 Sum_probs=193.0
Q ss_pred hccChhhHHHHHHHHHhc---------CCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHH
Q 001912 198 LDVILPFQLEGVRFGLRR---------GGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~---------~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
+...++||.+||+.++.+ ..++||.+.+|+|||++++.++..+.. ..++|||||. .|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 345799999999976432 237899999999999999998877653 3469999999 899999999999
Q ss_pred HCCCCCCceEEEEccCCCCc-ccc-cCCCeEEEEehhHHHHHHHh-hhhc----cccEEEeccccccccCCCCCcHHHHH
Q 001912 265 WLPFCLPADIHLVFGHRNNP-VHL-TRFPRVVVISYTMLHRLRKS-MIEQ----DWALLIVDESHHVRCSKRTSEPEEVK 337 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~-~~~-~~~~~VvItTy~~l~~~~~~-l~~~----~~~~VIvDEaH~iKN~~~~~~s~~~~ 337 (997)
+.+... . ..+..... ..+ .....|+|+|++.+...... +... ...+||+||||+.- .....+
T Consensus 316 ~~~~~~----~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~------~~~~~~ 384 (667)
T TIGR00348 316 LQKDCA----E-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ------YGELAK 384 (667)
T ss_pred hCCCCC----c-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc------chHHHH
Confidence 875311 0 01111111 001 12367999999999863222 2111 12389999999862 122223
Q ss_pred HHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchh--HHHHHHhhccccccccccchhhhhhhhccHHHHHH
Q 001912 338 AVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAK--YDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415 (997)
Q Consensus 338 al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~--~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~ 415 (997)
.+.... ...++++|||||+...-.+-+..+. ..+|... +.+.+...+..
T Consensus 385 ~l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~----~~fg~~i~~Y~~~~AI~dG~------------------------ 435 (667)
T TIGR00348 385 NLKKAL-KNASFFGFTGTPIFKKDRDTSLTFA----YVFGRYLHRYFITDAIRDGL------------------------ 435 (667)
T ss_pred HHHhhC-CCCcEEEEeCCCccccccccccccc----CCCCCeEEEeeHHHHhhcCC------------------------
Confidence 333333 3457899999998542111111111 0011110 01111100000
Q ss_pred HHHhHHHHHHHhhhhhccCCCceEEEEEE--ecChhHHHH-HHHHHHHHhhhccccCCCCCCCCCCccccch-hhhcccc
Q 001912 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRL--LLKRSEIVS-AKAAVGVINDSEKDATNDKTPKDSDEHDDSG-ACCRLGK 491 (997)
Q Consensus 416 ~l~~~~~lRR~k~~v~~~LP~k~~~~i~~--~l~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 491 (997)
+-+-....+.. .++.+.... +.......... .. ........ .......
T Consensus 436 ------------------~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~--~~~~~~l~~~~~~~~~ 487 (667)
T TIGR00348 436 ------------------TVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPER--------IR--EITKESLKEKLQKTKK 487 (667)
T ss_pred ------------------eeeEEEEecchhhccChHHHHHHHHHHHHhhhcc--------cc--HHHHHHHHHHHHHHHh
Confidence 00000000000 011110000 00000000000 00 00000000 0000000
Q ss_pred cch-hhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc-----CCeEEEEeCCCC
Q 001912 492 ISY-QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDGNTL 565 (997)
Q Consensus 492 l~~-~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~-----gi~~~~idG~~s 565 (997)
+.. .......+..+.+.+..+ ....+.|.+|||..+..+..+.+.|... +...+.++|+.+
T Consensus 488 ~~~~~~~~~~ia~~i~~h~~~~-------------~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~ 554 (667)
T TIGR00348 488 ILFNEDRLESIAKDIAEHYAKF-------------KELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKES 554 (667)
T ss_pred hhcChHHHHHHHHHHHHHHHHh-------------hhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCcc
Confidence 000 000001111111111110 1123689999999999998888887654 345667777654
Q ss_pred HH---------------------HHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhh
Q 001912 566 PR---------------------DRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624 (997)
Q Consensus 566 ~~---------------------eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~ 624 (997)
.+ ....++++|.+++.++| |++.....+|.|.+.++++++.-|--+.. +.|++||+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~i-lIVvdmllTGFDaP~l~tLyldKplk~h~-LlQai~R~n 632 (667)
T TIGR00348 555 DDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKL-LIVVDMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTN 632 (667)
T ss_pred chhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceE-EEEEcccccccCCCccceEEEeccccccH-HHHHHHHhc
Confidence 33 23478999986667788 67779999999999999999998877654 789999999
Q ss_pred hc-CC-CCeEEEEEEee
Q 001912 625 RR-GQ-TSAVNIYIFCA 639 (997)
Q Consensus 625 Ri-GQ-~k~V~Vy~Li~ 639 (997)
|+ +. +....|+.++.
T Consensus 633 R~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 633 RIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cccCCCCCCEEEEECcC
Confidence 95 43 33466666644
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.8e-18 Score=173.79 Aligned_cols=314 Identities=18% Similarity=0.229 Sum_probs=210.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHH-HHHHHHHHh---hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQ-AIAIAACFI---SAGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlq-aial~~~~~---~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
++-.-|..++-..++ |..+|.-...|+|||.+ +|+++.... .+-.+||+.|+ .|..|-..-+....... ....
T Consensus 49 kPS~IQqrAi~~Ilk-GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~ 126 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILK-GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYM-NVQC 126 (400)
T ss_pred CchHHHhhhhhhhhc-ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccc-cceE
Confidence 445579999988887 77788888999999986 344433321 22358999999 77777777777655443 2344
Q ss_pred EEEccCCCC---cccccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 275 HLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 275 ~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
+...|+++- ...+....+||..|+..+....+ .|......++|+|||..+-|... ...+-.+.+.......+
T Consensus 127 hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgf---k~Qiydiyr~lp~~~Qv 203 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGF---KEQIYDIYRYLPPGAQV 203 (400)
T ss_pred EEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhH---HHHHHHHHHhCCCCceE
Confidence 555554442 22233456899999998876543 45567899999999999976422 22233344444456678
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~ 429 (997)
+++|||- +.|+..+.++..++.
T Consensus 204 v~~SATl----p~eilemt~kfmtdp------------------------------------------------------ 225 (400)
T KOG0328|consen 204 VLVSATL----PHEILEMTEKFMTDP------------------------------------------------------ 225 (400)
T ss_pred EEEeccC----cHHHHHHHHHhcCCc------------------------------------------------------
Confidence 9999994 233333333221111
Q ss_pred hhccCCCceEEEE-EEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 430 LLVQLPPKRRQII-RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 430 v~~~LP~k~~~~i-~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
.+..+ +-+++.+..+.|-- .-+...-|...++++
T Consensus 226 --------vrilvkrdeltlEgIKqf~v-------------------------------------~ve~EewKfdtLcdL 260 (400)
T KOG0328|consen 226 --------VRILVKRDELTLEGIKQFFV-------------------------------------AVEKEEWKFDTLCDL 260 (400)
T ss_pred --------eeEEEecCCCchhhhhhhee-------------------------------------eechhhhhHhHHHHH
Confidence 01000 01111111111100 000011122333333
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+... .-...+|||+.+...|+|.+.++...+.+..+||.|+.++|.++++.|+ .+..+| |++
T Consensus 261 Yd~L----------------tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR-sg~Srv-Lit 322 (400)
T KOG0328|consen 261 YDTL----------------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR-SGKSRV-LIT 322 (400)
T ss_pred hhhh----------------ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh-cCCceE-EEE
Confidence 3221 1236899999999999999999999999999999999999999999999 778889 999
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|++-+.|++++..+.||+||+|-|+..|++||||.+|.|.+- | +..|+...
T Consensus 323 TDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG-v-ainFVk~~ 373 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG-V-AINFVKSD 373 (400)
T ss_pred echhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc-e-EEEEecHH
Confidence 999999999999999999999999999999999999999753 2 33445443
No 63
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=5.2e-18 Score=198.19 Aligned_cols=348 Identities=20% Similarity=0.207 Sum_probs=210.1
Q ss_pred ChhhhccChhhHHHHHHHHH---hcC-CCeEEEcCCCchHHHHHHHHHHHHhhCC---cEEEEeCc-chHHHHHHHHHHH
Q 001912 194 PKSLLDVILPFQLEGVRFGL---RRG-GRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 194 p~~l~~~L~pyQ~~gV~~~l---~~~-g~~ILaDemGLGKTlqaial~~~~~~~g---p~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
|......+|+||..||.... .+| .++||.+.+|+|||.+|++++..++..+ ++|+++-. +|+.|-..++.+|
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 33445689999999999853 333 3799999999999999999999988755 68999987 9999999999999
Q ss_pred CCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh-------hhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 266 LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS-------MIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~-------l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
.|+... +..+.+.... ...+|+|+||+++...... +....||+|||||||+= ..+.++.
T Consensus 239 ~P~~~~--~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-------i~~~~~~ 304 (875)
T COG4096 239 LPFGTK--MNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-------IYSEWSS 304 (875)
T ss_pred CCCccc--eeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh-------HHhhhHH
Confidence 998653 3333332222 2568999999999875443 22345999999999983 2445667
Q ss_pred HHHHHhhcCcEEEEeccCCCCC-----------hhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhh
Q 001912 339 VLDVAAKVKRIVLLSGTPSLSR-----------PYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 339 l~~l~~~~~~~llLTGTPi~n~-----------~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 407 (997)
+..... ..+++|||||-..- |...|++=..+..|++-+..
T Consensus 305 I~dYFd--A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~--------------------------- 355 (875)
T COG4096 305 ILDYFD--AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYK--------------------------- 355 (875)
T ss_pred HHHHHH--HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCC---------------------------
Confidence 776653 33478899997521 11111111111111111100
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhh
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (997)
++--.++-+...--|. .++ ++.+.....+.. ... .......+.
T Consensus 356 -------------vi~i~~~~~~~G~~~~--------~~s-erek~~g~~i~~-dd~------~~~~~d~dr-------- 398 (875)
T COG4096 356 -------------VIRIDTDFDLDGWKPD--------AGS-EREKLQGEAIDE-DDQ------NFEARDFDR-------- 398 (875)
T ss_pred -------------ceEEeeeccccCcCcC--------ccc-hhhhhhccccCc-ccc------cccccccch--------
Confidence 0000000000010111 111 111111111100 000 000000000
Q ss_pred cccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc-----CCeEEEEeC
Q 001912 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDG 562 (997)
Q Consensus 488 ~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~-----gi~~~~idG 562 (997)
.+........-...+.+++...+ ....-.|.||||....+++.|...|... |--+..|+|
T Consensus 399 ---~~v~~~~~~~V~r~~~~~l~~~~------------~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 399 ---TLVIPFRTETVARELTEYLKRGA------------TGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred ---hccccchHHHHHHHHHHHhcccc------------CCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 00000000000111223332210 1122569999999999999999999864 233567899
Q ss_pred CCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcC-------CCC-eEEE
Q 001912 563 NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-------QTS-AVNI 634 (997)
Q Consensus 563 ~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiG-------Q~k-~V~V 634 (997)
.. ++=+..|+.|-.......+.+|.+.+.+|+|++.+-.+||+-+.-+-..+.|.+||.-|+- |.| ...|
T Consensus 464 d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~i 541 (875)
T COG4096 464 DA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTI 541 (875)
T ss_pred cc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEE
Confidence 87 5556778888764444444999999999999999999999999999999999999999973 444 3556
Q ss_pred EEEe
Q 001912 635 YIFC 638 (997)
Q Consensus 635 y~Li 638 (997)
+.++
T Consensus 542 fDf~ 545 (875)
T COG4096 542 FDFV 545 (875)
T ss_pred EEhh
Confidence 5554
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=7.9e-18 Score=201.54 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=87.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc--------
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS-------- 599 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~-------- 599 (997)
..+.++||||......+.+...|...|+++..++|.+...+|..+...|+ . ..| +++|..+|.|+|+.
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~-~--g~V-lIATdmAgRGtDI~l~~~v~~~ 497 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ-K--GAV-TVATSMAGRGTDIKLGKGVAEL 497 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC-C--CeE-EEEccccccccCCCCCcccccc
Confidence 56889999999999999999999999999999999998888877766665 3 355 89999999999999
Q ss_pred -cccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 600 -SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 600 -~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
+.++|+.++++-+... .|+.||++|.|..-..
T Consensus 498 GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 498 GGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred CCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 8899999999977655 9999999999976543
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=5.4e-17 Score=196.29 Aligned_cols=104 Identities=18% Similarity=0.287 Sum_probs=86.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH-----HHHHHhccC---CC------ceEEEEecccccc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ-----SAVHSFQLS---NE------VKIAIIGITAGGV 594 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~-----~~i~~F~~~---~~------~~VlLlSt~agg~ 594 (997)
.+.++|||++.+..++.|.+.|...++ ..+||.++..+|. .++++|.+. ++ ...+|++|++++.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 467899999999999999999998887 8899999999999 789999851 11 1345999999999
Q ss_pred ccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCe--EEEEEE
Q 001912 595 GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA--VNIYIF 637 (997)
Q Consensus 595 GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~--V~Vy~L 637 (997)
|||+.. ++||+...|+ ..|+||+||++|.|.... ++|+.+
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 999985 8999877664 799999999999998643 455543
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.76 E-value=2.5e-16 Score=189.57 Aligned_cols=323 Identities=21% Similarity=0.227 Sum_probs=213.2
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHhhCC--------cEEEEeCc-chHHHHHHHHHHHCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAG--------SILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~~~g--------p~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
..+|.|+|+.++.... .|.++|+..+||+|||..|+. ++..+...+ .+|-|.|. +|-..-.+-+..|..
T Consensus 20 ~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred cCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 4589999999998877 488999999999999999976 344444442 27999998 777778888888765
Q ss_pred CCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHH------HhhhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 268 FCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLR------KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~------~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
.. ...+.+.+|..... ....+.++|+|||.+++.-.. +.| .+...|||||.|.+.+++. +.+.+-.
T Consensus 99 ~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l--~~vr~VIVDEiHel~~sKR--G~~Lsl~ 173 (814)
T COG1201 99 EL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELL--RDVRYVIVDEIHALAESKR--GVQLALS 173 (814)
T ss_pred Hc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHh--cCCcEEEeehhhhhhcccc--chhhhhh
Confidence 32 22334444433221 223446899999999997532 233 4677899999999987553 3455555
Q ss_pred HHHHHhhc--CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHH
Q 001912 339 VLDVAAKV--KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVL 416 (997)
Q Consensus 339 l~~l~~~~--~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~ 416 (997)
+..+..-+ ..|++||||-- .+.++- +||.+.-- . |
T Consensus 174 LeRL~~l~~~~qRIGLSATV~--~~~~va---rfL~g~~~-~---------~---------------------------- 210 (814)
T COG1201 174 LERLRELAGDFQRIGLSATVG--PPEEVA---KFLVGFGD-P---------C---------------------------- 210 (814)
T ss_pred HHHHHhhCcccEEEeehhccC--CHHHHH---HHhcCCCC-c---------e----------------------------
Confidence 55544333 57899999953 344333 33322110 0 0
Q ss_pred HHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhh
Q 001912 417 LKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQE 496 (997)
Q Consensus 417 l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 496 (997)
. ....+......+.+.......... ..
T Consensus 211 ------------~-Iv~~~~~k~~~i~v~~p~~~~~~~----------------------------------------~~ 237 (814)
T COG1201 211 ------------E-IVDVSAAKKLEIKVISPVEDLIYD----------------------------------------EE 237 (814)
T ss_pred ------------E-EEEcccCCcceEEEEecCCccccc----------------------------------------cc
Confidence 0 000111111111111111000000 00
Q ss_pred hhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcC-CeEEEEeCCCCHHHHHHHHHH
Q 001912 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG-IGFVRIDGNTLPRDRQSAVHS 575 (997)
Q Consensus 497 ~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~g-i~~~~idG~~s~~eR~~~i~~ 575 (997)
........+.+.+. ....+|||++.+.+.+.+...|...+ ..+..-||+.|.++|..+-++
T Consensus 238 ~~~~~~~~i~~~v~------------------~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 238 LWAALYERIAELVK------------------KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred hhHHHHHHHHHHHh------------------hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHH
Confidence 00001111222222 34479999999999999999999886 788899999999999999999
Q ss_pred hccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhh-cCCCCeEEEEEEeeCCChHHH
Q 001912 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHR-RGQTSAVNIYIFCAKDTTDES 646 (997)
Q Consensus 576 F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~R-iGQ~k~V~Vy~Li~~gTiEe~ 646 (997)
|+ .|+.++ ++||.....|||+-..|.||++.+|-.-+...||+||+++ +|. +--.++++.+ .|+.
T Consensus 300 lk-~G~lra-vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dl 365 (814)
T COG1201 300 LK-EGELKA-VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDL 365 (814)
T ss_pred Hh-cCCceE-EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHH
Confidence 99 677888 8999999999999999999999999999999999999864 333 3344455555 4443
No 67
>PRK09401 reverse gyrase; Reviewed
Probab=99.75 E-value=1.8e-16 Score=201.83 Aligned_cols=297 Identities=15% Similarity=0.158 Sum_probs=186.4
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
...++|+|+.++..++. |..+++..+||+|||..++.++..+.. ...+|||+|+ .|+.||.+.+.++..... ..+.
T Consensus 78 G~~pt~iQ~~~i~~il~-g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~-~~~~ 155 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL-GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG-CGVK 155 (1176)
T ss_pred CCCCcHHHHHHHHHHHC-CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcC-ceEE
Confidence 34789999999988776 677889999999999755544433332 4569999999 899999999999976443 2233
Q ss_pred EEccCCC----Ccc----ccc-CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCC---------CcHHHHH
Q 001912 276 LVFGHRN----NPV----HLT-RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT---------SEPEEVK 337 (997)
Q Consensus 276 ~~~g~~~----~~~----~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~---------~~s~~~~ 337 (997)
...++.. ... .+. ..++|+|+|++.+.+....+....+++|||||||++-.+..+ .......
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~ 235 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIE 235 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHH
Confidence 3333221 111 112 357999999999988777666667999999999997532211 1111122
Q ss_pred HHHHHHhh------------------------cCcEEEEeccCCCCChhH-HHHHHHhhccCCccchhHHHHHHhhcccc
Q 001912 338 AVLDVAAK------------------------VKRIVLLSGTPSLSRPYD-IFHQINMLWPGLLGKAKYDFAKTYCDVKT 392 (997)
Q Consensus 338 al~~l~~~------------------------~~~~llLTGTPi~n~~~E-l~~ll~~l~p~~~~~~~~~F~~~~~~~~~ 392 (997)
.+...... ....+++|||........ ++ ..+++
T Consensus 236 ~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~-------~~ll~--------------- 293 (1176)
T PRK09401 236 KAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLF-------RELLG--------------- 293 (1176)
T ss_pred HHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHh-------hccce---------------
Confidence 22222111 233456666653211110 00 00000
Q ss_pred ccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCC
Q 001912 393 VQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDK 472 (997)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 472 (997)
|-+.+. ...+.. ..+ .++...
T Consensus 294 ----------------------------~~v~~~----~~~~rn-I~~-~yi~~~------------------------- 314 (1176)
T PRK09401 294 ----------------------------FEVGSP----VFYLRN-IVD-SYIVDE------------------------- 314 (1176)
T ss_pred ----------------------------EEecCc----ccccCC-ceE-EEEEcc-------------------------
Confidence 000000 000000 000 011000
Q ss_pred CCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHH---HHHHHHH
Q 001912 473 TPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKV---LDGVQEF 549 (997)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~---ld~L~~~ 549 (997)
.|...+.+++.. -+..+|||++.... ++.|.++
T Consensus 315 ---------------------------~k~~~L~~ll~~-----------------l~~~~LIFv~t~~~~~~ae~l~~~ 350 (1176)
T PRK09401 315 ---------------------------DSVEKLVELVKR-----------------LGDGGLIFVPSDKGKEYAEELAEY 350 (1176)
T ss_pred ---------------------------cHHHHHHHHHHh-----------------cCCCEEEEEecccChHHHHHHHHH
Confidence 011112222221 13479999998666 9999999
Q ss_pred HHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe---ccccccccCccc-ccEEEEecCCC------CccHHhhH
Q 001912 550 ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG---ITAGGVGLDFSS-AQNVVFLELPQ------SPSLMLQA 619 (997)
Q Consensus 550 L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS---t~agg~GLNL~~-A~~VI~~D~~w------np~~~~Qa 619 (997)
|...|+++..+||++ .+.+++|. +|+++|++.+ |.+++.|||++. ..+||||+.|- ....+..+
T Consensus 351 L~~~gi~v~~~hg~l-----~~~l~~F~-~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~ 424 (1176)
T PRK09401 351 LEDLGINAELAISGF-----ERKFEKFE-EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFL 424 (1176)
T ss_pred HHHCCCcEEEEeCcH-----HHHHHHHH-CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHH
Confidence 999999999999999 23469999 8899996665 789999999999 89999999997 66778888
Q ss_pred HHhhhhcC
Q 001912 620 EDRAHRRG 627 (997)
Q Consensus 620 ~gRa~RiG 627 (997)
+||...+-
T Consensus 425 ~~r~~~~~ 432 (1176)
T PRK09401 425 LLRLLSLL 432 (1176)
T ss_pred HHHHHhhc
Confidence 88886443
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.75 E-value=9.9e-17 Score=195.64 Aligned_cols=352 Identities=19% Similarity=0.193 Sum_probs=201.8
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
.|+|.|.++|.-.+..++++|++-+||+|||+.|.+.+..-.. .++++.|||. +|..+-.++|.+|-.+. ..+..
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~G--irV~~ 108 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELG--IRVGI 108 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcC--CEEEE
Confidence 8999999999877666889999999999999999876655444 3699999999 99999999999665443 24666
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhh--hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEec
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI--EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~--~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTG 354 (997)
..|............+|+|+||+.+-....... ....++|||||+|.+.....++.....-+-.......-+.++|||
T Consensus 109 ~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSA 188 (766)
T COG1204 109 STGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSA 188 (766)
T ss_pred ecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEee
Confidence 666665444455678999999999876433221 247899999999999765333322222111111111147899999
Q ss_pred cCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccC
Q 001912 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434 (997)
Q Consensus 355 TPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~L 434 (997)
|- .+..|+-..++ -....+.+ -|..-+............... .. ......-...+ ..+...+
T Consensus 189 Tl--pN~~evA~wL~---a~~~~~~~-rp~~l~~~v~~~~~~~~~~~~-~k-~~~~~~~~~~~----------~~v~~~~ 250 (766)
T COG1204 189 TL--PNAEEVADWLN---AKLVESDW-RPVPLRRGVPYVGAFLGADGK-KK-TWPLLIDNLAL----------ELVLESL 250 (766)
T ss_pred ec--CCHHHHHHHhC---CcccccCC-CCcccccCCccceEEEEecCc-cc-cccccchHHHH----------HHHHHHH
Confidence 94 34556555444 33221100 011111100000000000000 00 00000000000 1112223
Q ss_pred CCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCcc
Q 001912 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514 (997)
Q Consensus 435 P~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~ 514 (997)
-.-....+++..........+.+...+......... ..
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~--------------------------------------~~---- 288 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEK--------------------------------------IV---- 288 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhh--------------------------------------hh----
Confidence 233344555554444443333333222211000000 00
Q ss_pred ccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 001912 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV 594 (997)
Q Consensus 515 ~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~ 594 (997)
......++..=.......+.+.+.+. .| +..-|.+++.++|+-+-+.|+ .+.++| |+||.....
T Consensus 289 -----------~~~~a~~~~~~~~~~~~~~~l~e~v~-~G--vafHhAGL~~~~R~~vE~~Fr-~g~ikV-lv~TpTLA~ 352 (766)
T COG1204 289 -----------LDEGASPILIPETPTSEDEELAELVL-RG--VAFHHAGLPREDRQLVEDAFR-KGKIKV-LVSTPTLAA 352 (766)
T ss_pred -----------ccccccccccccccccchHHHHHHHH-hC--ccccccCCCHHHHHHHHHHHh-cCCceE-EEechHHhh
Confidence 00001111110111122244555443 34 456899999999999999999 889999 899999999
Q ss_pred ccCcccccEEEE-----ec-----CCCCccHHhhHHHhhhhcCCCC
Q 001912 595 GLDFSSAQNVVF-----LE-----LPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 595 GLNL~~A~~VI~-----~D-----~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
|+||++ .+||+ || -+-++..+.|..|||+|.|=..
T Consensus 353 GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 353 GVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred hcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 999994 55555 44 2346788999999999999544
No 69
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.3e-17 Score=183.01 Aligned_cols=328 Identities=17% Similarity=0.238 Sum_probs=205.7
Q ss_pred CChhhhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHhhCC------------c-EEEEeCc-chHHH
Q 001912 193 LPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISAG------------S-ILVVCPA-ILRLS 257 (997)
Q Consensus 193 lp~~l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~~~g------------p-~LIV~P~-sL~~q 257 (997)
+...-...+-|+|+-++.-+.. |++.+.+..+|+|||.--+. ++.+++..+ | .||++|+ .|+.|
T Consensus 89 i~~~~~~~ptpvQk~sip~i~~-Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 89 IKRSGYTKPTPVQKYSIPIISG-GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cccccccCCCcceeeccceeec-CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 3334445788999999966554 66678888999999998764 344444322 2 7999999 89999
Q ss_pred HHHHHHHHCCCCCCceEEEEccCC--CCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEecccccccc-CCCCCc
Q 001912 258 WAEELERWLPFCLPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRC-SKRTSE 332 (997)
Q Consensus 258 W~~Ei~k~~p~~~~~~i~~~~g~~--~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN-~~~~~~ 332 (997)
-..|.+++........+.++.+.. .......+..+|+++|...|....+. +...+..++|+|||.++-. ....+.
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccccc
Confidence 999999997654333333333311 12233445789999999999775442 2234556999999999854 222211
Q ss_pred HHHHHHHHHHHh----hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHH-hhccccccccccchhhhhhhh
Q 001912 333 PEEVKAVLDVAA----KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKT-YCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 333 s~~~~al~~l~~----~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~-~~~~~~~~~~~~~~~~~~~~~ 407 (997)
++.+..-.. ..+.-++.|||=-. ++-. ....|... |.-...
T Consensus 248 ---Ir~iv~~~~~~~~~~~qt~mFSAtfp~----~iq~------------l~~~fl~~~yi~laV--------------- 293 (482)
T KOG0335|consen 248 ---IRKIVEQLGMPPKNNRQTLLFSATFPK----EIQR------------LAADFLKDNYIFLAV--------------- 293 (482)
T ss_pred ---HHHHhcccCCCCccceeEEEEeccCCh----hhhh------------hHHHHhhccceEEEE---------------
Confidence 111111110 11223444444100 0000 00011110 000000
Q ss_pred ccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhh
Q 001912 408 VRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487 (997)
Q Consensus 408 ~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (997)
..+...-..-...++++.
T Consensus 294 --------------------~rvg~~~~ni~q~i~~V~------------------------------------------ 311 (482)
T KOG0335|consen 294 --------------------GRVGSTSENITQKILFVN------------------------------------------ 311 (482)
T ss_pred --------------------eeeccccccceeEeeeec------------------------------------------
Confidence 000011111111222221
Q ss_pred cccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Q 001912 488 RLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPR 567 (997)
Q Consensus 488 ~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~ 567 (997)
...|...+.+.+.....- ..+.....++++||++.++.++.+..+|...++++..|||..+..
T Consensus 312 ----------~~~kr~~Lldll~~~~~~-------~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~ 374 (482)
T KOG0335|consen 312 ----------EMEKRSKLLDLLNKDDGP-------PSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQI 374 (482)
T ss_pred ----------chhhHHHHHHHhhcccCC-------cccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhh
Confidence 011111122222110000 001123356999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 568 DRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 568 eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
+|.+.++.|. ++.+.| |+.|.++..|||+.+..|||+||+|-+-..|.+||||.+|.|+.--.+.+.
T Consensus 375 er~~al~~Fr-~g~~pv-lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 375 EREQALNDFR-NGKAPV-LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred HHHHHHHHhh-cCCcce-EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 9999999999 788888 899999999999999999999999999999999999999999986555543
No 70
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.73 E-value=1.4e-16 Score=176.87 Aligned_cols=330 Identities=17% Similarity=0.236 Sum_probs=226.4
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HH-HHhhCC------cEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AA-CFISAG------SILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~-~~~~~g------p~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
...+...|++.|-.++. |..+|-|.-+|+|||+.-+.- +. .++..| -+|||.|+ .|..|--+-+.+-..+
T Consensus 89 fv~~teiQ~~~Ip~aL~-G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~ 167 (758)
T KOG0343|consen 89 FVKMTEIQRDTIPMALQ-GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKH 167 (758)
T ss_pred CccHHHHHHhhcchhcc-CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhc
Confidence 34678899999999887 667888899999999876542 22 233333 38999999 8888887777775432
Q ss_pred CCCceEEEEccCCCCccccc--CCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 269 CLPADIHLVFGHRNNPVHLT--RFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~~~~~~--~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
. ......+.|+++...+.. ...+|+|+|++.|..+.+. |...+..++|+|||.++-..+. .....++..-+
T Consensus 168 h-~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGF---k~tL~~Ii~~l 243 (758)
T KOG0343|consen 168 H-DFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGF---KKTLNAIIENL 243 (758)
T ss_pred c-ccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhH---HHHHHHHHHhC
Confidence 2 223344556555433322 2568999999999887654 4445788999999999865332 33455566655
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
...+..+++|||+-. +..||.- +.+-+|.+.+-. .+.
T Consensus 244 P~~RQTLLFSATqt~-svkdLaR-LsL~dP~~vsvh--------e~a--------------------------------- 280 (758)
T KOG0343|consen 244 PKKRQTLLFSATQTK-SVKDLAR-LSLKDPVYVSVH--------ENA--------------------------------- 280 (758)
T ss_pred Chhheeeeeecccch-hHHHHHH-hhcCCCcEEEEe--------ccc---------------------------------
Confidence 567788999999964 3444432 122233322110 000
Q ss_pred HHHhhhhhccCCCceE-EEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 424 RRLKQHLLVQLPPKRR-QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 424 RR~k~~v~~~LP~k~~-~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
....|..-. ..+.+++ ..|+
T Consensus 281 -------~~atP~~L~Q~y~~v~l----------------------------------------------------~~Ki 301 (758)
T KOG0343|consen 281 -------VAATPSNLQQSYVIVPL----------------------------------------------------EDKI 301 (758)
T ss_pred -------cccChhhhhheEEEEeh----------------------------------------------------hhHH
Confidence 000111100 1111111 1233
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCC
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSN 580 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~ 580 (997)
..+-.+|..|+ ..|.|||...-.-+..+.+.+... |++...+||.|+...|..+.++|..
T Consensus 302 ~~L~sFI~shl----------------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~-- 363 (758)
T KOG0343|consen 302 DMLWSFIKSHL----------------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR-- 363 (758)
T ss_pred HHHHHHHHhcc----------------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--
Confidence 33444566553 458999999988899999998875 9999999999999999999999984
Q ss_pred CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhH
Q 001912 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655 (997)
Q Consensus 581 ~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~ 655 (997)
.-.++|.+|++++.||+++..|.||-+|-|-+...|++|.||..|.+-.-...+|.. -+-+|.|...++.|.
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 234669999999999999999999999999999999999999999887665555433 234588888887774
No 71
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=4.6e-17 Score=180.13 Aligned_cols=335 Identities=21% Similarity=0.240 Sum_probs=193.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-Hh--------hCCc-EEEEeCc-chHHHHHHHHHHHCCC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FI--------SAGS-ILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~--------~~gp-~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
.+---|..+|--++. |..+++-..+|+|||+..++-+.. +. ..|+ .|||||+ .|..|-.+-+.+.+..
T Consensus 159 ~pTsVQkq~IP~lL~-grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE-GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred ccchHhhcchhhhhc-CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 566789999988887 677999999999999988764433 22 2455 6999999 8999988888887543
Q ss_pred CC-CceEEEEccCC--CCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHH
Q 001912 269 CL-PADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV 342 (997)
Q Consensus 269 ~~-~~~i~~~~g~~--~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l 342 (997)
.. .+.-.++.|.+ ....++....+|+|.|.+.+...... +.-.+...||+|||.+|-.-+... .+..+...
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfek---dit~Il~~ 314 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEK---DITQILKA 314 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchh---hHHHHHHH
Confidence 21 00011223322 33455677889999999999875443 333456789999999987544322 22333332
Q ss_pred Hhh-----c--------CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhcc
Q 001912 343 AAK-----V--------KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409 (997)
Q Consensus 343 ~~~-----~--------~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (997)
... + ...++||||-- |-.+.|.-+ -+
T Consensus 315 v~~~~~~e~~~~~lp~q~q~mLlSATLt-----d~V~rLa~~---sL--------------------------------- 353 (708)
T KOG0348|consen 315 VHSIQNAECKDPKLPHQLQNMLLSATLT-----DGVNRLADL---SL--------------------------------- 353 (708)
T ss_pred HhhccchhcccccccHHHHhHhhhhhhH-----HHHHHHhhc---cc---------------------------------
Confidence 211 0 12355555521 101111000 00
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChh--HHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhh
Q 001912 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRS--EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACC 487 (997)
Q Consensus 410 ~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (997)
..|+ ++.++.. +..--...+.+.... ...+.. + ....
T Consensus 354 --------kDpv---------------------~I~ld~s~~~~~p~~~a~~ev~~~---~~~~~l----~---~~~i-- 392 (708)
T KOG0348|consen 354 --------KDPV---------------------YISLDKSHSQLNPKDKAVQEVDDG---PAGDKL----D---SFAI-- 392 (708)
T ss_pred --------cCce---------------------eeeccchhhhcCcchhhhhhcCCc---cccccc----c---cccC--
Confidence 0000 0001000 000000000000000 000000 0 0000
Q ss_pred cccccchhh---hhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHH------------
Q 001912 488 RLGKISYQE---LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE------------ 552 (997)
Q Consensus 488 ~l~~l~~~~---~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~------------ 552 (997)
..++.... ....++-.+..++.++-. .....|+|||....++.+.=.++|..
T Consensus 393 -PeqL~qry~vVPpKLRLV~Laa~L~~~~k------------~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~ 459 (708)
T KOG0348|consen 393 -PEQLLQRYTVVPPKLRLVALAALLLNKVK------------FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGA 459 (708)
T ss_pred -cHHhhhceEecCCchhHHHHHHHHHHHhh------------hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCC
Confidence 00000000 000111122222222111 13456999998888776655444432
Q ss_pred ----------cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHh
Q 001912 553 ----------KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDR 622 (997)
Q Consensus 553 ----------~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gR 622 (997)
.+.++.++||+|+.++|...+..|....+. +|++|++++.||||+....||-||+|.+++.|.+|+||
T Consensus 460 ~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGR 537 (708)
T KOG0348|consen 460 PDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGR 537 (708)
T ss_pred cccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhh
Confidence 234699999999999999999999854443 49999999999999999999999999999999999999
Q ss_pred hhhcCCCCeEEEE
Q 001912 623 AHRRGQTSAVNIY 635 (997)
Q Consensus 623 a~RiGQ~k~V~Vy 635 (997)
..|+|-+-.-..|
T Consensus 538 TARaG~kG~alLf 550 (708)
T KOG0348|consen 538 TARAGEKGEALLF 550 (708)
T ss_pred hhhccCCCceEEE
Confidence 9999987654443
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=4.6e-16 Score=177.19 Aligned_cols=314 Identities=15% Similarity=0.184 Sum_probs=176.7
Q ss_pred hHHHHHHHHHhcCC-CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCC---CCceEEEEc
Q 001912 204 FQLEGVRFGLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFC---LPADIHLVF 278 (997)
Q Consensus 204 yQ~~gV~~~l~~~g-~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~---~~~~i~~~~ 278 (997)
||.++++-+...+. .++++.++|+|||..++..+. ...+++++|+|. +|+.+|.+.+.+++... ....+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l--~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~ 78 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLL--HGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVS 78 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHH--HcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence 79999988887553 478899999999998876544 345689999999 89999999988886321 112233333
Q ss_pred cCCC-C---cc-------------c------ccCCCeEEEEehhHHHHHHHhh----------hhccccEEEeccccccc
Q 001912 279 GHRN-N---PV-------------H------LTRFPRVVVISYTMLHRLRKSM----------IEQDWALLIVDESHHVR 325 (997)
Q Consensus 279 g~~~-~---~~-------------~------~~~~~~VvItTy~~l~~~~~~l----------~~~~~~~VIvDEaH~iK 325 (997)
|... + .. . ....+.|++|+++++....... ....+++||+||+|.+.
T Consensus 79 g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~ 158 (357)
T TIGR03158 79 KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYD 158 (357)
T ss_pred CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccC
Confidence 3210 0 00 0 0124678999999997543321 12467999999999986
Q ss_pred cCCCCCcH--HHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhh
Q 001912 326 CSKRTSEP--EEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQD 403 (997)
Q Consensus 326 N~~~~~~s--~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 403 (997)
......-. .....+........++++|||||-. ++...+.-+ +.++... . ...+..+.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~----~~~~~l~~~--~~~~~~~----------~---~v~g~~~~- 218 (357)
T TIGR03158 159 AKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP----ALILRLQNA--KQAGVKI----------A---PIDGEKYQ- 218 (357)
T ss_pred cccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH----HHHHHHHhc--cccCcee----------e---eecCcccc-
Confidence 32111000 0111222222224689999999852 223222211 0111100 0 00000000
Q ss_pred hhhhccHHHHHHHHHhHHHHHHHhh-hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCcccc
Q 001912 404 FSKGVRLEELNVLLKQTVMIRRLKQ-HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDD 482 (997)
Q Consensus 404 ~~~~~~~~eL~~~l~~~~~lRR~k~-~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (997)
...+ .+ +....+. .....+|+. ...+.. ........ +..+
T Consensus 219 --~~~~-~~---------~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~~~~---l~~l--------------------- 259 (357)
T TIGR03158 219 --FPDN-PE---------LEADNKTQSFRPVLPPV-ELELIP--APDFKEEE---LSEL--------------------- 259 (357)
T ss_pred --cCCC-hh---------hhccccccccceeccce-EEEEEe--CCchhHHH---HHHH---------------------
Confidence 0000 00 0000000 000112322 111111 11100000 0000
Q ss_pred chhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcC--CeEEEE
Q 001912 483 SGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG--IGFVRI 560 (997)
Q Consensus 483 ~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~g--i~~~~i 560 (997)
+..+.+.+. ...+.|+|||++....++.+...|...| +.+..+
T Consensus 260 -------------------~~~i~~~~~----------------~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l 304 (357)
T TIGR03158 260 -------------------AEEVIERFR----------------QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI 304 (357)
T ss_pred -------------------HHHHHHHHh----------------ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee
Confidence 000011111 1346799999999999999999999865 578899
Q ss_pred eCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhh
Q 001912 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624 (997)
Q Consensus 561 dG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~ 624 (997)
+|.++..+|.+.. +..| |++|.+++.|||+.. +.|| ++ +-++..|.||+||++
T Consensus 305 ~g~~~~~~R~~~~-------~~~i-LVaTdv~~rGiDi~~-~~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERAM-------QFDI-LLGTSTVDVGVDFKR-DWLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHhc-------cCCE-EEEecHHhcccCCCC-ceEE-EC-CCCHHHHhhhcccCC
Confidence 9999999987643 3445 899999999999986 4666 56 678899999999974
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.73 E-value=6.1e-16 Score=197.36 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=85.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC---------------------------------CeEEEEeCCCCHHHHHHHHHH
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKG---------------------------------IGFVRIDGNTLPRDRQSAVHS 575 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~g---------------------------------i~~~~idG~~s~~eR~~~i~~ 575 (997)
.+.++|||++.+..++.+...|++.. +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35789999999999999998887531 114567899999999999999
Q ss_pred hccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhc
Q 001912 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRR 626 (997)
Q Consensus 576 F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~Ri 626 (997)
|+ ++..+| |++|.+++.|||+...++||+++.|.+...+.|++||++|.
T Consensus 323 fK-~G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LK-SGELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HH-hCCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99 788888 89999999999999999999999999999999999999995
No 74
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=5.2e-16 Score=169.99 Aligned_cols=315 Identities=19% Similarity=0.258 Sum_probs=202.2
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCC-------cEEEEeCc-chHHHHHHHHHHHCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAG-------SILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~g-------p~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
...+-|-|..++-.++. +..+..-..+|+|||+.-+.-+.... ... -.|||.|+ .|..|..+-+..|+.
T Consensus 26 F~~mTpVQa~tIPlll~-~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 26 FEKMTPVQAATIPLLLK-NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred CcccCHHHHhhhHHHhc-CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 34788999999988887 56678888999999998876554433 211 26999999 777776666555544
Q ss_pred CCCCceEEEEccCCCCccc----ccCCCeEEEEehhHHHHHHHh----hhhccccEEEeccccccccCCCCCcHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNNPVH----LTRFPRVVVISYTMLHRLRKS----MIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~~~----~~~~~~VvItTy~~l~~~~~~----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al 339 (997)
.+.......+.|+..-..+ ....+.|+|.|++.|...... +.-....++|+|||.++-..+. -.....+
T Consensus 105 ~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgF---e~~~n~I 181 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGF---EASVNTI 181 (567)
T ss_pred hhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccH---HHHHHHH
Confidence 3333344444444332222 123578999999998776543 4445788999999999965332 2234555
Q ss_pred HHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 340 ~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
+....+-++.=+.|||-.+. .++ +... | |+.
T Consensus 182 Ls~LPKQRRTGLFSATq~~~-v~d---L~ra---G------------------------------------------LRN 212 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSATQTQE-VED---LARA---G------------------------------------------LRN 212 (567)
T ss_pred HHhcccccccccccchhhHH-HHH---HHHh---h------------------------------------------ccC
Confidence 55555555555667773211 010 0000 0 000
Q ss_pred HHHHH-HHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 420 TVMIR-RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 420 ~~~lR-R~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
|+-+. ..+.. ...|. .-...++.. ..
T Consensus 213 pv~V~V~~k~~--~~tPS-~L~~~Y~v~--------------------------------------------------~a 239 (567)
T KOG0345|consen 213 PVRVSVKEKSK--SATPS-SLALEYLVC--------------------------------------------------EA 239 (567)
T ss_pred ceeeeeccccc--ccCch-hhcceeeEe--------------------------------------------------cH
Confidence 00000 00000 00010 000001111 11
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHh
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSF 576 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F 576 (997)
..|...+.+++.+ ...+|+|||...-...++....|... ++.++-|||.|+..+|..++..|
T Consensus 240 ~eK~~~lv~~L~~----------------~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 240 DEKLSQLVHLLNN----------------NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred HHHHHHHHHHHhc----------------cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 2344444455543 34679999988877778777777654 77899999999999999999999
Q ss_pred ccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 577 ~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
.+ ..-.| |++|++++.|||+++.|.||.||||-+|..+.+|.||..|.|..-.-.|+.
T Consensus 304 ~~-~~~~v-l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 304 RK-LSNGV-LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred Hh-ccCce-EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 95 33334 999999999999999999999999999999999999999999775544443
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.6e-16 Score=188.29 Aligned_cols=114 Identities=15% Similarity=0.246 Sum_probs=95.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCc---cccc--
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDF---SSAQ-- 602 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL---~~A~-- 602 (997)
..+.++||||......+.|...|...|+++..+||.+...++..+...++ . ..| +++|..+|.|+|+ +..+
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~-~--g~V-lIATdmAgRG~DI~l~~~V~~~ 501 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQ-K--GAV-TVATNMAGRGTDIKLGEGVHEL 501 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCC-C--CeE-EEEccchhcCcCCCcccccccc
Confidence 46889999999999999999999999999999999998888777777766 3 355 8999999999999 4676
Q ss_pred ---EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 603 ---NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 603 ---~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+||.+|+|-|+..+.|+.||++|.|..-....| + |.|+.++.+
T Consensus 502 GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~~ 547 (790)
T PRK09200 502 GGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLKR 547 (790)
T ss_pred cCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHHh
Confidence 999999999999999999999999987443222 2 446666543
No 76
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=1.4e-15 Score=185.35 Aligned_cols=342 Identities=19% Similarity=0.266 Sum_probs=227.7
Q ss_pred cChhhHHHHHHHHHh---cCC--CeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCcchH-HHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLR---RGG--RCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAILR-LSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~---~~g--~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~sL~-~qW~~Ei~k~~p~~~~~ 272 (997)
.--|=|..+|+-..+ .+. .-+||-|+|-|||=.|+=.+-... ...-+.|+||+.|+ .|..+.|..-+..+ +.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV 672 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGF-PV 672 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCC-Ce
Confidence 445678888887543 111 236677799999999985444333 44459999999655 45666666554433 33
Q ss_pred eEEEEccCCCCc------ccc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 273 DIHLVFGHRNNP------VHL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 273 ~i~~~~g~~~~~------~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.|.+...-.... ..+ ...-||||.|+..|.++..+ .+.++|||||=|++.= +.-..+..+. .
T Consensus 673 ~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGV-------k~KEkLK~Lr-~ 741 (1139)
T COG1197 673 RIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGV-------KHKEKLKELR-A 741 (1139)
T ss_pred eEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcCc-------cHHHHHHHHh-c
Confidence 444433211111 111 12468999999999887654 5789999999999831 1223344443 4
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
.-.+|-||||||+..+. |. +.|- + +|
T Consensus 742 ~VDvLTLSATPIPRTL~-----Ms-----m~Gi-R-------------------------------dl------------ 767 (1139)
T COG1197 742 NVDVLTLSATPIPRTLN-----MS-----LSGI-R-------------------------------DL------------ 767 (1139)
T ss_pred cCcEEEeeCCCCcchHH-----HH-----Hhcc-h-------------------------------hh------------
Confidence 45689999999976532 00 0000 0 00
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
+ ....||..+..|...+.+.+-...+..+ .
T Consensus 768 ---S-vI~TPP~~R~pV~T~V~~~d~~~ireAI----------------------------------------------~ 797 (1139)
T COG1197 768 ---S-VIATPPEDRLPVKTFVSEYDDLLIREAI----------------------------------------------L 797 (1139)
T ss_pred ---h-hccCCCCCCcceEEEEecCChHHHHHHH----------------------------------------------H
Confidence 1 1246777766665544443332222211 0
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCCCce
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~~~~ 583 (997)
. ...+|.+|....+..+.+..+.+.|+.. ..++...||.|+..+-++++..|. +++..
T Consensus 798 R-------------------El~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~-~g~~d 857 (1139)
T COG1197 798 R-------------------ELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY-NGEYD 857 (1139)
T ss_pred H-------------------HHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH-cCCCC
Confidence 0 0135778888888899999999999875 567888999999999999999999 78899
Q ss_pred EEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHh--
Q 001912 584 IAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSS-- 660 (997)
Q Consensus 584 VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~-- 660 (997)
| |+||....+|||+++||++|+-+.+ +--+++.|-.||++|-. +.-+-|.++-.+ ..+-+...+++..+.+
T Consensus 858 V-Lv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~---k~lT~~A~kRL~aI~~~~ 931 (1139)
T COG1197 858 V-LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQ---KALTEDAEKRLEAIASFT 931 (1139)
T ss_pred E-EEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecCc---cccCHHHHHHHHHHHhhh
Confidence 9 8999999999999999999998876 67899999999999943 456777776643 1222233445555544
Q ss_pred -hhCCChhhhhhhchhhhhccccc
Q 001912 661 -ATNGKYDALQEIAVEGVSYLEMS 683 (997)
Q Consensus 661 -~l~g~~~~~~~~~~~~~~~l~~~ 683 (997)
.-.|..-++.+++++|++.+...
T Consensus 932 ~LGaGf~lA~~DLeIRGaGNlLG~ 955 (1139)
T COG1197 932 ELGAGFKLAMHDLEIRGAGNLLGE 955 (1139)
T ss_pred hcCchHHHHhcchhccccccccCc
Confidence 33455888999999999987653
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=4.8e-17 Score=193.62 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=93.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS------ 600 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~------ 600 (997)
...|+.|||||.+....+.|.+.|...|+++..++|. ..+|+..+..|. .+...| +++|..+|.|+|+..
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~a-g~~g~V-tIATnmAgRGtDI~l~~V~~~ 477 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQA-GRKGAV-TIATNMAGRGTDIKLEEVKEL 477 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhc-CCCceE-EEEeccccCCcCCCccchhhc
Confidence 3579999999999999999999999999999999999 578999999998 666777 899999999999987
Q ss_pred -ccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 601 -AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 601 -A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
..+||.++++-|+..+.|+.||++|.|..-....
T Consensus 478 GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 478 GGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred CCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 6699999999999999999999999998754433
No 78
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=8.9e-17 Score=172.30 Aligned_cols=304 Identities=22% Similarity=0.275 Sum_probs=202.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH--HHHH-----h--hCCc-EEEEeCc-chHHHHHHHHHHHCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI--AACF-----I--SAGS-ILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial--~~~~-----~--~~gp-~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
.+.-|.|-.+.--+++ |..+|-...+|.|||+.-+.- +... + ..+| +|++.|+ .|..|-.-|..++--
T Consensus 241 qKPtPIqSQaWPI~LQ-G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy 319 (629)
T KOG0336|consen 241 QKPTPIQSQAWPILLQ-GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY 319 (629)
T ss_pred CCCCcchhcccceeec-CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh
Confidence 3677777777444554 777888889999999987752 1110 1 1233 8999999 788888888888743
Q ss_pred CCCCceEEEEccCC--CCcccccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 268 ~~~~~~i~~~~g~~--~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
... ..+.++.|.. .....+.+..+|+|.|...|..+.- .+.-....+||+|||.++-.... ..+..+.++.+
T Consensus 320 ng~-ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgF--EpqIrkilldi- 395 (629)
T KOG0336|consen 320 NGL-KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF--EPQIRKILLDI- 395 (629)
T ss_pred cCc-ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccc--cHHHHHHhhhc-
Confidence 322 2233444333 2334566788999999999977432 23335788999999999876543 33434444444
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
+.-+..++-|||- |.- .......|.. .|++.
T Consensus 396 RPDRqtvmTSATW----------------P~~----VrrLa~sY~K-----------------------------ep~~v 426 (629)
T KOG0336|consen 396 RPDRQTVMTSATW----------------PEG----VRRLAQSYLK-----------------------------EPMIV 426 (629)
T ss_pred CCcceeeeecccC----------------chH----HHHHHHHhhh-----------------------------CceEE
Confidence 2344556666761 110 0011111111 11000
Q ss_pred HHHhhhhhc--cCCC--ceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 424 RRLKQHLLV--QLPP--KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 424 RR~k~~v~~--~LP~--k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
+.. +|-. ...+.+. -....
T Consensus 427 ------~vGsLdL~a~~sVkQ~i~---------------------------------------------------v~~d~ 449 (629)
T KOG0336|consen 427 ------YVGSLDLVAVKSVKQNII---------------------------------------------------VTTDS 449 (629)
T ss_pred ------EecccceeeeeeeeeeEE---------------------------------------------------ecccH
Confidence 000 0000 0011111 11122
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
.|+..+..++.+ .....|+|||+....++|-|..-|.-.||....+||.-...+|+.+++.|+ .
T Consensus 450 ~k~~~~~~f~~~---------------ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k-s 513 (629)
T KOG0336|consen 450 EKLEIVQFFVAN---------------MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK-S 513 (629)
T ss_pred HHHHHHHHHHHh---------------cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh-c
Confidence 233333334433 246789999999999999999999999999999999999999999999999 7
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCC
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
|+++| |+.|+.++.||++....||+.||.|-|-..|.+++||.+|.|.+-
T Consensus 514 G~vrI-LvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 514 GEVRI-LVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred CceEE-EEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc
Confidence 88998 899999999999999999999999999999999999999999764
No 79
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.71 E-value=1.7e-15 Score=182.51 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=90.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
+.++|||+.....++.+.+.|... ++.+..+||+++.. ++.+++|..++..+| |++|..+++||++++.++||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeE-EeccChhhccccccCeeEEEEC
Confidence 568999999999999999999887 78999999999864 566788743677777 9999999999999999999999
Q ss_pred c---CC---------CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 608 E---LP---------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 608 D---~~---------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
+ .+ .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 7 22 2667889999999887 45678888877653
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1e-15 Score=181.59 Aligned_cols=113 Identities=13% Similarity=0.250 Sum_probs=90.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc---ccc---
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS---SAQ--- 602 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~---~A~--- 602 (997)
.+..+||||......+.|.+.|...|+++..|||.++ +|+..+..|. .....| +++|..+|.|+|+. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~a-g~~g~V-lVATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARA-GQRGRI-TVATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHc-CCCCcE-EEEccchhcccCcCCccchhhcC
Confidence 4678999999999999999999999999999999874 5555566665 334455 89999999999998 443
Q ss_pred --EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 603 --NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 603 --~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+||.+|.|-|...|.|++||++|.|..-.+..+ + |.|+.++..
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~ 592 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQS 592 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHh
Confidence 999999999999999999999999976433222 2 346665544
No 81
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.9e-16 Score=174.34 Aligned_cols=358 Identities=17% Similarity=0.214 Sum_probs=206.0
Q ss_pred hccChhhHHHHHHHHHh--------cCCCeEEEcCCCchHHHHHHHHHHHHhhCC-----cEEEEeCc-chHHHHHHHHH
Q 001912 198 LDVILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAIAACFISAG-----SILVVCPA-ILRLSWAEELE 263 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~--------~~g~~ILaDemGLGKTlqaial~~~~~~~g-----p~LIV~P~-sL~~qW~~Ei~ 263 (997)
...++|-|...+-|++. +++.+.++.++|+|||+.-..-+...+... +++||+|+ .|+.|-.++|.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 45799999999999754 355678899999999997654444444444 47999999 78899999999
Q ss_pred HHCCCCCCceEEEEccCCCCcc---cccC-----CCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCc
Q 001912 264 RWLPFCLPADIHLVFGHRNNPV---HLTR-----FPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSE 332 (997)
Q Consensus 264 k~~p~~~~~~i~~~~g~~~~~~---~~~~-----~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~ 332 (997)
+|.+... ..|....|...-.. .+.. ..||+|+|.+.|..+... |.-.+..++|||||.++-+
T Consensus 237 ~~~~~tg-L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~------ 309 (620)
T KOG0350|consen 237 RLNSGTG-LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD------ 309 (620)
T ss_pred HhccCCc-eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH------
Confidence 9987542 23333333222111 1111 238999999999876542 3335678999999999953
Q ss_pred HHHHHHHHHHHhhcCcEEEEeccC-CCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHH
Q 001912 333 PEEVKAVLDVAAKVKRIVLLSGTP-SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411 (997)
Q Consensus 333 s~~~~al~~l~~~~~~~llLTGTP-i~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (997)
+.++..... ++.+++|+ ....+.+++.+..-..|-.+++....|.+.| .
T Consensus 310 -qsfQ~Wl~~------v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~-----------------------~ 359 (620)
T KOG0350|consen 310 -QSFQEWLDT------VMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY-----------------------P 359 (620)
T ss_pred -HHHHHHHHH------HHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC-----------------------c
Confidence 223333322 12333443 1111222333222222222222111000000 0
Q ss_pred HHHHHHHhHHHHHHHhh---hhhccCCCceEE----EEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccch
Q 001912 412 ELNVLLKQTVMIRRLKQ---HLLVQLPPKRRQ----IIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG 484 (997)
Q Consensus 412 eL~~~l~~~~~lRR~k~---~v~~~LP~k~~~----~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (997)
.|..++. +-.+.+.-. ++....|...-. +....+.+. ... .
T Consensus 360 ~l~kL~~-satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~-l~~---------------------------~--- 407 (620)
T KOG0350|consen 360 PLWKLVF-SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSS-LSH---------------------------R--- 407 (620)
T ss_pred hhHhhhc-chhhhcChHHHhhhhcCCCceEEeecccceeeecChh-hhh---------------------------c---
Confidence 0000000 000000000 000011100000 000000000 000 0
Q ss_pred hhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHH----HcCCeEEEE
Q 001912 485 ACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFIS----EKGIGFVRI 560 (997)
Q Consensus 485 ~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~----~~gi~~~~i 560 (997)
.+. .+. .-|--.+...+. ..+..++|+|++..+....|...|. ...+++-.+
T Consensus 408 ------~vv-~~~-~~kpl~~~~lI~----------------~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~ 463 (620)
T KOG0350|consen 408 ------LVV-TEP-KFKPLAVYALIT----------------SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEF 463 (620)
T ss_pred ------eee-ccc-ccchHhHHHHHH----------------HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhh
Confidence 000 000 000000111111 1346799999999999888888776 335667779
Q ss_pred eCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeC
Q 001912 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640 (997)
Q Consensus 561 dG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~ 640 (997)
+|+.+.+.|.+.+++|+ .++++| |+++++++.|+|+...+.||.||||-.-..|.+|.||..|-||.- ++|.++..
T Consensus 464 t~~l~~k~r~k~l~~f~-~g~i~v-LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 464 TGQLNGKRRYKMLEKFA-KGDINV-LICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred hhhhhHHHHHHHHHHHh-cCCceE-EEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999 788999 999999999999999999999999999999999999999999874 34445444
Q ss_pred CChHHHHHHHHHHh
Q 001912 641 DTTDESHWQNLNKS 654 (997)
Q Consensus 641 gTiEe~i~~~l~~K 654 (997)
. |++.+-.+-+|
T Consensus 540 ~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 540 H--EKRLFSKLLKK 551 (620)
T ss_pred c--cchHHHHHHHH
Confidence 3 45555444333
No 82
>COG4889 Predicted helicase [General function prediction only]
Probab=99.70 E-value=2.9e-16 Score=181.13 Aligned_cols=375 Identities=19% Similarity=0.218 Sum_probs=193.2
Q ss_pred CCChhhhccChhhHHHHHHHHHh---cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 192 KLPKSLLDVILPFQLEGVRFGLR---RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 192 ~lp~~l~~~L~pyQ~~gV~~~l~---~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
.+|..-..+|||||.+++..+++ -+.|+=|...+|+|||.+++-++..+ ...++|.+||+ +|+.|-.+|...-.
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a~~~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-AAARILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-hhhheEeecchHHHHHHHHHHHhhcc-
Confidence 45666667999999999998664 24566677789999999999887765 34789999999 89988655533211
Q ss_pred CCCCceEEEEccCCCCc--cc-------------------------ccCCCeEEEEehhHHHHHHHhh--hhccccEEEe
Q 001912 268 FCLPADIHLVFGHRNNP--VH-------------------------LTRFPRVVVISYTMLHRLRKSM--IEQDWALLIV 318 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~--~~-------------------------~~~~~~VvItTy~~l~~~~~~l--~~~~~~~VIv 318 (997)
.+......+....+-.+ ++ -....-||++||+.+....+.- --..||+||+
T Consensus 231 ~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 231 ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEe
Confidence 11111122222211110 00 0112359999999998765542 2368999999
Q ss_pred ccccccccCCC-CCcHHHHHHHH-HHHhhcCcEEEEeccCCC------CChhHHHHHHHhhccCCccchhHHHHHHhhcc
Q 001912 319 DESHHVRCSKR-TSEPEEVKAVL-DVAAKVKRIVLLSGTPSL------SRPYDIFHQINMLWPGLLGKAKYDFAKTYCDV 390 (997)
Q Consensus 319 DEaH~iKN~~~-~~~s~~~~al~-~l~~~~~~~llLTGTPi~------n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~ 390 (997)
||||+--...- +.+...+..+. ...-++.+|+.|||||-. .+..|--+.+.-++ + ...|..
T Consensus 311 DEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD-----D-e~~fGe----- 379 (1518)
T COG4889 311 DEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD-----D-ELTFGE----- 379 (1518)
T ss_pred cchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc-----h-hhhhch-----
Confidence 99999532110 00111111111 111145667999999831 11111111110000 0 001111
Q ss_pred ccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCC
Q 001912 391 KTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATN 470 (997)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~ 470 (997)
+++.+--..- ...++ |......++.+ +..... ..+.......+.
T Consensus 380 ---------------------ef~rl~FgeA----v~rdl---LTDYKVmvlaV--d~~~i~------~~~~~~~~~~~~ 423 (1518)
T COG4889 380 ---------------------EFHRLGFGEA----VERDL---LTDYKVMVLAV--DKEVIA------GVLQSVLSGPSK 423 (1518)
T ss_pred ---------------------hhhcccHHHH----HHhhh---hccceEEEEEe--chhhhh------hhhhhhccCccc
Confidence 1111100000 00011 22333333333 222111 011110000000
Q ss_pred CCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHH--
Q 001912 471 DKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQE-- 548 (997)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~-- 548 (997)
..... ... .+...-.+.+|-.+-.+-+.+.+ ....+.++.|-||....+-..|.+
T Consensus 424 ~L~~d-----d~~-------kIvG~wnGlakr~g~~n~~~~~~-----------~d~ap~~RAIaF~k~I~tSK~i~~sF 480 (1518)
T COG4889 424 GLALD-----DVS-------KIVGCWNGLAKRNGEDNDLKNIK-----------ADTAPMQRAIAFAKDIKTSKQIAESF 480 (1518)
T ss_pred ccchh-----hhh-------hhhhhhhhhhhhccccccccCCc-----------CCchHHHHHHHHHHhhHHHHHHHHHH
Confidence 00000 000 00000011111111000000000 012334566666655544333332
Q ss_pred ---------HHHHc----CCeEEEEeCCCCHHHHHHHHHHhcc--CCCceEEEEeccccccccCcccccEEEEecCCCCc
Q 001912 549 ---------FISEK----GIGFVRIDGNTLPRDRQSAVHSFQL--SNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSP 613 (997)
Q Consensus 549 ---------~L~~~----gi~~~~idG~~s~~eR~~~i~~F~~--~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp 613 (997)
.|.+. .+.+-.+||.|+..+|.+....-+. ..+++| |...+++++|+++++.|-||||||--+-
T Consensus 481 e~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~sm 559 (1518)
T COG4889 481 ETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSM 559 (1518)
T ss_pred HHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhH
Confidence 22222 3456678999999999766543321 456788 9999999999999999999999999999
Q ss_pred cHHhhHHHhhhhcCCCCe-EEEEEEee
Q 001912 614 SLMLQAEDRAHRRGQTSA-VNIYIFCA 639 (997)
Q Consensus 614 ~~~~Qa~gRa~RiGQ~k~-V~Vy~Li~ 639 (997)
....|+.||+-|..-.|+ -+|...|+
T Consensus 560 VDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 560 VDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred HHHHHHHHHHHHhCcCCccceEEEEec
Confidence 999999999999876654 45655554
No 83
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.70 E-value=2.4e-15 Score=185.49 Aligned_cols=304 Identities=18% Similarity=0.176 Sum_probs=187.1
Q ss_pred HHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-hhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCc
Q 001912 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284 (997)
Q Consensus 207 ~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~ 284 (997)
+.+.-.+..+..+|+..++|+|||.+....+... ...+.++|+.|+ -+..|-...+.+.+.......+.+......
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~-- 85 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN-- 85 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc--
Confidence 3444456667889999999999999987655433 345689999999 566677776665544322222322222111
Q ss_pred ccccCCCeEEEEehhHHHHHHHh-hhhccccEEEeccccc-cccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChh
Q 001912 285 VHLTRFPRVVVISYTMLHRLRKS-MIEQDWALLIVDESHH-VRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362 (997)
Q Consensus 285 ~~~~~~~~VvItTy~~l~~~~~~-l~~~~~~~VIvDEaH~-iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~ 362 (997)
......+|+|+|.+.+.+.... ..-.++++||+||+|. .-+.. ..-...+.+........++++||||.-...+
T Consensus 86 -~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~D--l~L~ll~~i~~~lr~dlqlIlmSATl~~~~l- 161 (819)
T TIGR01970 86 -KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDAD--LGLALALDVQSSLREDLKILAMSATLDGERL- 161 (819)
T ss_pred -ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccc--hHHHHHHHHHHhcCCCceEEEEeCCCCHHHH-
Confidence 1223568999999988765432 2235789999999994 43211 1011122333323334578999999642211
Q ss_pred HHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEE
Q 001912 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII 442 (997)
Q Consensus 363 El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i 442 (997)
-.|+ +. ...+. ..+. ..|- ...
T Consensus 162 -----~~~l-----~~-----------~~vI~-~~gr---------------------------------~~pV---e~~ 183 (819)
T TIGR01970 162 -----SSLL-----PD-----------APVVE-SEGR---------------------------------SFPV---EIR 183 (819)
T ss_pred -----HHHc-----CC-----------CcEEE-ecCc---------------------------------ceee---eeE
Confidence 1111 10 00000 0000 0110 111
Q ss_pred EEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccc
Q 001912 443 RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522 (997)
Q Consensus 443 ~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~ 522 (997)
++.....+. +... ....+...+.
T Consensus 184 y~~~~~~~~--~~~~-------------------------------------------v~~~l~~~l~------------ 206 (819)
T TIGR01970 184 YLPLRGDQR--LEDA-------------------------------------------VSRAVEHALA------------ 206 (819)
T ss_pred Eeecchhhh--HHHH-------------------------------------------HHHHHHHHHH------------
Confidence 111111000 0000 0000111111
Q ss_pred cccccCCCCeEEEEeCCHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc
Q 001912 523 DIDVNPRSNKMIIFAHHLKVLDGVQEFISE---KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599 (997)
Q Consensus 523 ~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~---~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~ 599 (997)
..+.++|||+......+.+.+.|.. .++.+..+||+++.++|.++++.|. ++..+| |+||..+++|||+.
T Consensus 207 -----~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~-~G~rkV-lVATnIAErgItIp 279 (819)
T TIGR01970 207 -----SETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDP-QGRRKV-VLATNIAETSLTIE 279 (819)
T ss_pred -----hcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcc-cCCeEE-EEecchHhhccccc
Confidence 1245799999999999999999987 4788999999999999999999998 667777 89999999999999
Q ss_pred cccEEEEecCC----CCccH--------------HhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 600 SAQNVVFLELP----QSPSL--------------MLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 600 ~A~~VI~~D~~----wnp~~--------------~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
+.++||.++.+ +||.. +.||.||++|. ++-.+|+|+++.
T Consensus 280 ~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 280 GIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred CceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99999999876 45544 78999999886 456688888764
No 84
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.69 E-value=5.7e-16 Score=170.96 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=201.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC--------cEEEEeCc-chHHHHHHHHHHHCCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG--------SILVVCPA-ILRLSWAEELERWLPFC 269 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g--------p~LIV~P~-sL~~qW~~Ei~k~~p~~ 269 (997)
..+-+-|...+.-++. |..++.+.-+|+|||+.-+.-+..++... .+|||||+ -|.-|-..|+++.+.+.
T Consensus 103 ~~MT~VQ~~ti~pll~-gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h 181 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLE-GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYH 181 (543)
T ss_pred cchhHHHHhhcCccCC-CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhC
Confidence 3677788777776666 56789999999999998776555443211 27999999 78888888777765444
Q ss_pred CCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 270 LPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 270 ~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
....+.++.|+.+.. ..+....+|+|.|++.|..+.+. +.-..-+++|+|||.++-.-+. ..-...+..+.
T Consensus 182 ~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF---~~di~~Ii~~l 258 (543)
T KOG0342|consen 182 ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGF---EEDVEQIIKIL 258 (543)
T ss_pred CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhccc---HHHHHHHHHhc
Confidence 223344444444332 22444678999999998775442 2223447999999999865332 23355566666
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
.+.++.++.|||-- ....++....---+|-+.+ ...+ +. .+
T Consensus 259 pk~rqt~LFSAT~~-~kV~~l~~~~L~~d~~~v~-----------------~~d~--------~~--~~----------- 299 (543)
T KOG0342|consen 259 PKQRQTLLFSATQP-SKVKDLARGALKRDPVFVN-----------------VDDG--------GE--RE----------- 299 (543)
T ss_pred cccceeeEeeCCCc-HHHHHHHHHhhcCCceEee-----------------cCCC--------CC--cc-----------
Confidence 56777899999932 2222222111000000000 0000 00 00
Q ss_pred HHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhh
Q 001912 424 RRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS 503 (997)
Q Consensus 424 RR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~ 503 (997)
--.+.++.+.+.- ...++.
T Consensus 300 ----------The~l~Qgyvv~~---------------------------------------------------~~~~f~ 318 (543)
T KOG0342|consen 300 ----------THERLEQGYVVAP---------------------------------------------------SDSRFS 318 (543)
T ss_pred ----------hhhcccceEEecc---------------------------------------------------ccchHH
Confidence 0000001000000 000011
Q ss_pred hhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCce
Q 001912 504 GFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVK 583 (997)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~ 583 (997)
.+..++..+ ....|+|||+..-.+.+...+.|....+++..|||..+...|.....+|.+...
T Consensus 319 ll~~~LKk~---------------~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes-- 381 (543)
T KOG0342|consen 319 LLYTFLKKN---------------IKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES-- 381 (543)
T ss_pred HHHHHHHHh---------------cCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc--
Confidence 112222221 123799999999999999999999999999999999999999999999995433
Q ss_pred EEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCC
Q 001912 584 IAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629 (997)
Q Consensus 584 VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~ 629 (997)
.+|++|++++.|+|+++.+.||-||||-+|..|++|+||..|-|-.
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 3599999999999999999999999999999999999999997755
No 85
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.68 E-value=3.1e-16 Score=176.46 Aligned_cols=324 Identities=15% Similarity=0.229 Sum_probs=216.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..-+-|..||-.++. +-..|+-.--|+|||++-..++..-+. .-..+||+|+ -+.-|-.+-+.+..+......-
T Consensus 47 ~ptkiQaaAIP~~~~-kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFS-KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred CCCchhhhhhhhhhc-ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 445778888876655 445788899999999875443333222 1237999999 7888999999999887776677
Q ss_pred EEEccCCCCccccc--CCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEE
Q 001912 275 HLVFGHRNNPVHLT--RFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350 (997)
Q Consensus 275 ~~~~g~~~~~~~~~--~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~l 350 (997)
+++.|+.....+.. ...+|+|.|.+.+..+.+ .+.-...+++|+|||..+-... .-...+..+..-+.+.+.++
T Consensus 126 svfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~--sfq~~In~ii~slP~~rQv~ 203 (980)
T KOG4284|consen 126 SVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE--SFQDDINIIINSLPQIRQVA 203 (980)
T ss_pred EEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh--hHHHHHHHHHHhcchhheee
Confidence 77777654332221 246799999999988654 3545678999999999985321 11223445555555778899
Q ss_pred EEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 351 lLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
..|||=-+| |-++|. .++..|.++|--.+++
T Consensus 204 a~SATYp~n----Ldn~Ls---------------------------------------------k~mrdp~lVr~n~~d~ 234 (980)
T KOG4284|consen 204 AFSATYPRN----LDNLLS---------------------------------------------KFMRDPALVRFNADDV 234 (980)
T ss_pred EEeccCchh----HHHHHH---------------------------------------------HHhcccceeecccCCc
Confidence 999994222 112111 1111222221111111
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
. -+.-| +.+....++.. ..+....|+..+...+.
T Consensus 235 ~-L~Gik--Qyv~~~~s~nn-------------------------------------------sveemrlklq~L~~vf~ 268 (980)
T KOG4284|consen 235 Q-LFGIK--QYVVAKCSPNN-------------------------------------------SVEEMRLKLQKLTHVFK 268 (980)
T ss_pred e-eechh--heeeeccCCcc-------------------------------------------hHHHHHHHHHHHHHHHh
Confidence 0 00001 11111111100 00001122333333333
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ 590 (997)
..|. ...||||....-++-|..+|...|+.+-.|.|.|+..+|..+++..+ .-.++| |+||+
T Consensus 269 ~ipy----------------~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr-~f~~rI-LVsTD 330 (980)
T KOG4284|consen 269 SIPY----------------VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR-AFRVRI-LVSTD 330 (980)
T ss_pred hCch----------------HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh-hceEEE-EEecc
Confidence 3222 35899999999999999999999999999999999999999999998 556788 99999
Q ss_pred ccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeC
Q 001912 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640 (997)
Q Consensus 591 agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~ 640 (997)
..+.|||-..+|.||.+|+|-+-..|.+|||||+|.|.+ ...|.++..+
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT~~~~~ 379 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH-GAAVTLLEDE 379 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhccccccc-ceeEEEeccc
Confidence 999999999999999999999999999999999999974 4555555444
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.68 E-value=5e-15 Score=183.34 Aligned_cols=334 Identities=19% Similarity=0.219 Sum_probs=214.3
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHH-HHHHHhhC--CcEEEEeCc-chHHHHHHHHHHHCCCCC-CceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIA-IAACFISA--GSILVVCPA-ILRLSWAEELERWLPFCL-PADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaia-l~~~~~~~--gp~LIV~P~-sL~~qW~~Ei~k~~p~~~-~~~i 274 (997)
.||.||.++++.+.. |.++|+.-.||+|||..-+. ++..++.. ..+|+|-|+ .|.....+.|.+|..... ...+
T Consensus 70 ~lY~HQ~~A~~~~~~-G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~ 148 (851)
T COG1205 70 RLYSHQVDALRLIRE-GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTF 148 (851)
T ss_pred cccHHHHHHHHHHHC-CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCccee
Confidence 499999999988776 67899999999999999865 44444443 357999999 888889999999976544 3344
Q ss_pred EEEccCCCCccc---ccCCCeEEEEehhHHHHHH------HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 275 HLVFGHRNNPVH---LTRFPRVVVISYTMLHRLR------KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 275 ~~~~g~~~~~~~---~~~~~~VvItTy~~l~~~~------~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
..+.|....... ....++|++|+|+|+.... -.+...++.+|||||+|.++-.....-....+.++.+...
T Consensus 149 ~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~ 228 (851)
T COG1205 149 GRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRR 228 (851)
T ss_pred eeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhc
Confidence 455554433222 3557899999999998621 1122345999999999999854332222333344443321
Q ss_pred ---cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHH
Q 001912 346 ---VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVM 422 (997)
Q Consensus 346 ---~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~ 422 (997)
....++.|||-- ++. +|...+........ +.
T Consensus 229 ~~~~~q~i~~SAT~~--np~-------------------e~~~~l~~~~f~~~--------v~----------------- 262 (851)
T COG1205 229 YGSPLQIICTSATLA--NPG-------------------EFAEELFGRDFEVP--------VD----------------- 262 (851)
T ss_pred cCCCceEEEEecccc--ChH-------------------HHHHHhcCCcceee--------cc-----------------
Confidence 346799999942 222 23222221110000 00
Q ss_pred HHHHhhhhhccCCCceEEEEEEecC-hhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhh
Q 001912 423 IRRLKQHLLVQLPPKRRQIIRLLLK-RSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501 (997)
Q Consensus 423 lRR~k~~v~~~LP~k~~~~i~~~l~-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K 501 (997)
...-|...+..+..... ...... .. . .+
T Consensus 263 --------~~g~~~~~~~~~~~~p~~~~~~~~-------~r----------------------------~--------s~ 291 (851)
T COG1205 263 --------EDGSPRGLRYFVRREPPIRELAES-------IR----------------------------R--------SA 291 (851)
T ss_pred --------CCCCCCCceEEEEeCCcchhhhhh-------cc----------------------------c--------ch
Confidence 00111111222211110 000000 00 0 00
Q ss_pred hhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHH----HHHHHcC----CeEEEEeCCCCHHHHHHHH
Q 001912 502 LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQ----EFISEKG----IGFVRIDGNTLPRDRQSAV 573 (997)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~----~~L~~~g----i~~~~idG~~s~~eR~~~i 573 (997)
......++.. ....+-|+|+|+.+...++.+. ..+...+ ..+..+.|++..++|.++.
T Consensus 292 ~~~~~~~~~~--------------~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 292 LAELATLAAL--------------LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIE 357 (851)
T ss_pred HHHHHHHHHH--------------HHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHH
Confidence 0000001110 1245789999999999998886 4444445 5578889999999999999
Q ss_pred HHhccCCCceEEEEeccccccccCcccccEEEEecCCC-CccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHH
Q 001912 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ-SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 574 ~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~w-np~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~ 649 (997)
..|+ .++..+ +++|.|+..|+++-..+.||..--|- +-..+.|+.||++|.||.-- ++...-.+-+|..++.
T Consensus 358 ~~~~-~g~~~~-~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 358 AEFK-EGELLG-VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLR 430 (851)
T ss_pred HHHh-cCCccE-EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhh
Confidence 9999 778888 99999999999999999999999988 78999999999999995433 2223337778887664
No 87
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=9.3e-16 Score=169.00 Aligned_cols=320 Identities=18% Similarity=0.272 Sum_probs=204.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHh--h----CCcEEEEeCc-chHHHH---HHHHHHHCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFI--S----AGSILVVCPA-ILRLSW---AEELERWLP 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~--~----~gp~LIV~P~-sL~~qW---~~Ei~k~~p 267 (997)
..+-|.|...|--++- |...+-+..+|+|||..-+.-+ ..++ . .-++||+||+ -|.-|- ...+.+|..
T Consensus 202 ~~PTpIQ~a~IPvall-gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~ 280 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALL-GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTD 280 (691)
T ss_pred CCCCchhhhcccHHhh-cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcc
Confidence 4677888888876665 4445556789999997654433 2222 2 2258999999 565554 444555543
Q ss_pred CCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLD 341 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~ 341 (997)
..+....|+-+-. ..+...+||||.|++.|..+... |.-....++|+|||.++-..+ -......+..
T Consensus 281 ----I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg---FademnEii~ 353 (691)
T KOG0338|consen 281 ----ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG---FADEMNEIIR 353 (691)
T ss_pred ----ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH---HHHHHHHHHH
Confidence 2333444433322 23556799999999999875442 333567799999999986422 1334567777
Q ss_pred HHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHH
Q 001912 342 VAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421 (997)
Q Consensus 342 l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~ 421 (997)
++.+.+..+|+|||-- ....||.++- +=.|-.. |.++. . .....|++-|
T Consensus 354 lcpk~RQTmLFSATMt-eeVkdL~slS-L~kPvri----------fvd~~--------------~-----~~a~~LtQEF 402 (691)
T KOG0338|consen 354 LCPKNRQTMLFSATMT-EEVKDLASLS-LNKPVRI----------FVDPN--------------K-----DTAPKLTQEF 402 (691)
T ss_pred hccccccceeehhhhH-HHHHHHHHhh-cCCCeEE----------EeCCc--------------c-----ccchhhhHHH
Confidence 7777778899999942 2222222210 0001000 00000 0 0000011111
Q ss_pred HHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhh
Q 001912 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501 (997)
Q Consensus 422 ~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K 501 (997)
+--|.+.+ .. . ..+
T Consensus 403 iRIR~~re----------~d---------R--------------------------------------ea~--------- 416 (691)
T KOG0338|consen 403 IRIRPKRE----------GD---------R--------------------------------------EAM--------- 416 (691)
T ss_pred heeccccc----------cc---------c--------------------------------------HHH---------
Confidence 00000000 00 0 000
Q ss_pred hhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCC
Q 001912 502 LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581 (997)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~ 581 (997)
+..++.. .-.++++||.+....++.|.-.|--.|+++..+||+.+..+|-+.++.|+ +.+
T Consensus 417 ---l~~l~~r----------------tf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk-~~e 476 (691)
T KOG0338|consen 417 ---LASLITR----------------TFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK-KEE 476 (691)
T ss_pred ---HHHHHHH----------------hcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH-hcc
Confidence 0001110 12468999999999999999999999999999999999999999999999 788
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCC-CeEEEEEEeeCCChHHHHHH
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~-k~V~Vy~Li~~gTiEe~i~~ 649 (997)
+.| |++|++++.|||+.+..+||+|+.|-+-..|.+|.||..|-|.. +.|+ |+.++ |-+|+.
T Consensus 477 idv-LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkllK 539 (691)
T KOG0338|consen 477 IDV-LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLLK 539 (691)
T ss_pred CCE-EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHHH
Confidence 999 99999999999999999999999999999999999999999865 3454 44444 555543
No 88
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=5.8e-16 Score=159.34 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=104.2
Q ss_pred cChhhHHHHHHHHHh------cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLR------RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~------~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
+|||||.+++.-++. .+++++|..+||+|||++++.++..+.. ++|||||+ +|+.||.+++..+.+.....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 689999999998764 2578999999999999999998887766 99999999 99999999998887643211
Q ss_pred eEEEEccCCC---------C----cccccCCCeEEEEehhHHHHHHHh-------------hhhccccEEEecccccccc
Q 001912 273 DIHLVFGHRN---------N----PVHLTRFPRVVVISYTMLHRLRKS-------------MIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 273 ~i~~~~g~~~---------~----~~~~~~~~~VvItTy~~l~~~~~~-------------l~~~~~~~VIvDEaH~iKN 326 (997)
.......... . ........++++++|+.+...... .....+++||+||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 1000000000 0 001123568999999999875432 2235789999999999852
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcEEEEeccCC
Q 001912 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357 (997)
Q Consensus 327 ~~~~~~s~~~~al~~l~~~~~~~llLTGTPi 357 (997)
...++.+.. ....++|+|||||.
T Consensus 161 ------~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 ------DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp ------HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred ------HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 222666666 36788999999995
No 89
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.67 E-value=5e-15 Score=183.03 Aligned_cols=306 Identities=17% Similarity=0.153 Sum_probs=185.6
Q ss_pred HHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-HhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCc
Q 001912 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNP 284 (997)
Q Consensus 207 ~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~ 284 (997)
.-+.-.+..+..+|+.-++|+|||.+....+.. ....+.++|++|+ -+..|....+.+.+.......+.+..+....
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~- 89 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK- 89 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc-
Confidence 334445566778999999999999998754443 2234689999999 6666777777665543222233332222111
Q ss_pred ccccCCCeEEEEehhHHHHHHHh-hhhccccEEEecccccc-ccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChh
Q 001912 285 VHLTRFPRVVVISYTMLHRLRKS-MIEQDWALLIVDESHHV-RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPY 362 (997)
Q Consensus 285 ~~~~~~~~VvItTy~~l~~~~~~-l~~~~~~~VIvDEaH~i-KN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~ 362 (997)
.....+|+|+|.+.+.+.... ..-.++++||+||+|.. -+. ...-.....+........++++||||.-...+
T Consensus 90 --~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~--Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l- 164 (812)
T PRK11664 90 --VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQA--DLALALLLDVQQGLRDDLKLLIMSATLDNDRL- 164 (812)
T ss_pred --cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCcccccc--chHHHHHHHHHHhCCccceEEEEecCCCHHHH-
Confidence 123457999999998765432 22367999999999972 110 00001112222222233468999999742211
Q ss_pred HHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEE
Q 001912 363 DIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQII 442 (997)
Q Consensus 363 El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i 442 (997)
-.++ +. ...+ ...+. ..|- ...
T Consensus 165 -----~~~~-----~~-----------~~~I-~~~gr---------------------------------~~pV---~~~ 186 (812)
T PRK11664 165 -----QQLL-----PD-----------APVI-VSEGR---------------------------------SFPV---ERR 186 (812)
T ss_pred -----HHhc-----CC-----------CCEE-EecCc---------------------------------cccc---eEE
Confidence 1111 00 0000 00000 0110 011
Q ss_pred EEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccc
Q 001912 443 RLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAA 522 (997)
Q Consensus 443 ~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~ 522 (997)
++.+...+. .... + ...+...+.
T Consensus 187 y~~~~~~~~--~~~~---v----------------------------------------~~~l~~~l~------------ 209 (812)
T PRK11664 187 YQPLPAHQR--FDEA---V----------------------------------------ARATAELLR------------ 209 (812)
T ss_pred eccCchhhh--HHHH---H----------------------------------------HHHHHHHHH------------
Confidence 111110000 0000 0 000111111
Q ss_pred cccccCCCCeEEEEeCCHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc
Q 001912 523 DIDVNPRSNKMIIFAHHLKVLDGVQEFISE---KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599 (997)
Q Consensus 523 ~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~---~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~ 599 (997)
..+..+|||+.....++.+.+.|.. .++.+..+||+++.++|.+++..|. ++..+| |++|..+++||++.
T Consensus 210 -----~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~-~G~rkV-lvATnIAErsLtIp 282 (812)
T PRK11664 210 -----QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP-AGRRKV-VLATNIAETSLTIE 282 (812)
T ss_pred -----hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc-CCCeEE-EEecchHHhccccc
Confidence 2246799999999999999999987 5788999999999999999999998 677777 99999999999999
Q ss_pred cccEEEEecCCC----Cc--------------cHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 600 SAQNVVFLELPQ----SP--------------SLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 600 ~A~~VI~~D~~w----np--------------~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
+.++||.++.+- +| +.+.||.||++|. .+-.+|+|+++...
T Consensus 283 ~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 283 GIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 999999977653 22 3588988888886 46778998887543
No 90
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.67 E-value=8.4e-15 Score=186.94 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=91.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCC--ceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLP--ADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~--~~i 274 (997)
..+.|+|..++..++. |..+++..++|+|||.-++.++..+.. ...+|||+|+ .|+.|+.+++.++...... ..+
T Consensus 77 ~~p~~iQ~~~i~~il~-G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLR-GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred CCCcHHHHHHHHHHhC-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 4689999999988776 667889999999999866655544433 3469999999 8999999999998764321 112
Q ss_pred EEEccCCCCcc------ccc-CCCeEEEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 275 HLVFGHRNNPV------HLT-RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 275 ~~~~g~~~~~~------~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
..++|...... .+. ..++|+|+|++.+......+.. +++++|+||||++-.
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 23334322111 112 2479999999999887666544 899999999999854
No 91
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=8.4e-15 Score=156.29 Aligned_cols=305 Identities=15% Similarity=0.171 Sum_probs=195.1
Q ss_pred hhhHHHHHHHHHhcCC-CeEEEcCCCchHHHHHHHHHHHHhhC---Cc-EEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 202 LPFQLEGVRFGLRRGG-RCLIADEMGLGKTLQAIAIAACFISA---GS-ILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g-~~ILaDemGLGKTlqaial~~~~~~~---gp-~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
-..|..++--++.... +.|--..-|+|||..-...+...... -| ++.++|+ -|..|-.+-+.+...+. .....
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEE
Confidence 3467777766766544 34445579999997655444432221 12 5777999 78888877777765543 12222
Q ss_pred EE-ccCCCCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEE
Q 001912 276 LV-FGHRNNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVL 351 (997)
Q Consensus 276 ~~-~g~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ll 351 (997)
+. .+.+..+... =...|||.|...+..+... +.-....+.++|||..+-+..+-. .....++.........++
T Consensus 193 yair~sk~~rG~~-i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~--D~S~rI~~~lP~~~QllL 269 (477)
T KOG0332|consen 193 YAIRGSKAKRGNK-LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQ--DQSIRIMRSLPRNQQLLL 269 (477)
T ss_pred EEecCcccccCCc-chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccccc--ccchhhhhhcCCcceEEe
Confidence 22 2221111111 1347999999999876554 334578899999999987754211 112233333334556788
Q ss_pred EeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhh
Q 001912 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431 (997)
Q Consensus 352 LTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~ 431 (997)
.|+|=. .....|..+..... .++++||..-
T Consensus 270 FSATf~--------------------e~V~~Fa~kivpn~---------------------------n~i~Lk~eel--- 299 (477)
T KOG0332|consen 270 FSATFV--------------------EKVAAFALKIVPNA---------------------------NVIILKREEL--- 299 (477)
T ss_pred eechhH--------------------HHHHHHHHHhcCCC---------------------------ceeeeehhhc---
Confidence 898821 22234444332211 1122332111
Q ss_pred ccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhcc
Q 001912 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511 (997)
Q Consensus 432 ~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~ 511 (997)
.|++-.+..+.|.-. ..|...+.+++..
T Consensus 300 -~L~~IkQlyv~C~~~---------------------------------------------------~~K~~~l~~lyg~ 327 (477)
T KOG0332|consen 300 -ALDNIKQLYVLCACR---------------------------------------------------DDKYQALVNLYGL 327 (477)
T ss_pred -cccchhhheeeccch---------------------------------------------------hhHHHHHHHHHhh
Confidence 122222222222111 1122222222221
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a 591 (997)
-.-...||||+.+.++..|...|...|..+..+||.+..++|..++++|+ .+..+| |++|.+
T Consensus 328 ----------------~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr-~g~~kV-LitTnV 389 (477)
T KOG0332|consen 328 ----------------LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR-EGKEKV-LITTNV 389 (477)
T ss_pred ----------------hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh-cCcceE-EEEech
Confidence 01235899999999999999999999999999999999999999999999 788889 999999
Q ss_pred cccccCcccccEEEEecCCC------CccHHhhHHHhhhhcCCCC
Q 001912 592 GGVGLDFSSAQNVVFLELPQ------SPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 592 gg~GLNL~~A~~VI~~D~~w------np~~~~Qa~gRa~RiGQ~k 630 (997)
++.|||.+..+.||.||+|- .+..|.+||||.+|.|.+-
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 99999999999999999984 6889999999999999653
No 92
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.66 E-value=5.2e-16 Score=165.36 Aligned_cols=319 Identities=23% Similarity=0.307 Sum_probs=202.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHH----HHHHHH--H-----hhCCcE-EEEeCc-chHHHHHHHHHHHC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA----IAIAAC--F-----ISAGSI-LVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqa----ial~~~--~-----~~~gp~-LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
...|.|..|+--.+. |...|-..=+|+|||++- |+++.. + ..+||+ |||||+ .|..|-.+-+..|+
T Consensus 192 ~PTpIQvQGlPvvLs-GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCceeecCcceEee-cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 567889999887776 444554445999999763 333322 1 246785 999999 77777666666654
Q ss_pred CCCCCc-----eEEEEccCC---CCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHH
Q 001912 267 PFCLPA-----DIHLVFGHR---NNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEV 336 (997)
Q Consensus 267 p~~~~~-----~i~~~~g~~---~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~ 336 (997)
..+... ......|+- .........-+|||.|...|...... +.-.-..++.+|||.++-..+.. .-+
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE---ddi 347 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE---DDI 347 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch---hhH
Confidence 221100 011111211 11222345678999999988764321 22234568999999998765432 336
Q ss_pred HHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhH-HHHHH-hhccccccccccchhhhhhhhccHHHHH
Q 001912 337 KAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKY-DFAKT-YCDVKTVQGYQGQLFQDFSKGVRLEELN 414 (997)
Q Consensus 337 ~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~-~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~eL~ 414 (997)
+.+...+..-+..+++|||-- . +. .|.+. ...+..+.- +. .++.+
T Consensus 348 r~iF~~FK~QRQTLLFSATMP----------------~-----KIQ~FAkSALVKPvtvNV--GR-----AGAAs----- 394 (610)
T KOG0341|consen 348 RTIFSFFKGQRQTLLFSATMP----------------K-----KIQNFAKSALVKPVTVNV--GR-----AGAAS----- 394 (610)
T ss_pred HHHHHHHhhhhheeeeecccc----------------H-----HHHHHHHhhcccceEEec--cc-----ccccc-----
Confidence 677777766677899999931 1 11 11100 000000000 00 00000
Q ss_pred HHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccch
Q 001912 415 VLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY 494 (997)
Q Consensus 415 ~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (997)
|+--|.-.|- +
T Consensus 395 -------------------------------ldViQevEyV------k-------------------------------- 405 (610)
T KOG0341|consen 395 -------------------------------LDVIQEVEYV------K-------------------------------- 405 (610)
T ss_pred -------------------------------hhHHHHHHHH------H--------------------------------
Confidence 0000000000 0
Q ss_pred hhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHH
Q 001912 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVH 574 (997)
Q Consensus 495 ~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~ 574 (997)
..+|+-.+.+- +....-+||||+....-.|.|.+||--+|+..+.|||+...++|...|+
T Consensus 406 ---qEaKiVylLeC-----------------LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 406 ---QEAKIVYLLEC-----------------LQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ---hhhhhhhHHHH-----------------hccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 01111112221 2244668999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 575 SFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 575 ~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
.|+ .++-.| |+.|++++-||++++..|||+||.|-.-..|.+||||.+|-|.+-- -..||.+++-+..++
T Consensus 466 afr-~gkKDV-LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLl 535 (610)
T KOG0341|consen 466 AFR-AGKKDV-LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLL 535 (610)
T ss_pred HHh-cCCCce-EEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHH
Confidence 999 666777 8999999999999999999999999999999999999999987642 233556665554443
No 93
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=3.2e-16 Score=163.56 Aligned_cols=299 Identities=21% Similarity=0.265 Sum_probs=198.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEE-cCCCchHHHHHHHHHHHHhhCC----cEEEEeCc-chHH---HHHHHHHHHCCCCC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIA-DEMGLGKTLQAIAIAACFISAG----SILVVCPA-ILRL---SWAEELERWLPFCL 270 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILa-DemGLGKTlqaial~~~~~~~g----p~LIV~P~-sL~~---qW~~Ei~k~~p~~~ 270 (997)
..-|.|.+++--++. |+-||| .-.|+|||-.-+--+....... ..+|++|+ .|.. |-..|+.+++.
T Consensus 107 kPSPiQeesIPiaLt--GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~--- 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT--GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG--- 181 (459)
T ss_pred CCCCccccccceeec--chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC---
Confidence 455788888777664 333444 4689999976554333333322 37999998 4544 45666776654
Q ss_pred CceEEEEccCC---CCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 271 PADIHLVFGHR---NNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 271 ~~~i~~~~g~~---~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
..+.+..|+. ++..++...-+++|.|...+..+.+. -.-.+..++|+|||..+-+.... .....+.....+
T Consensus 182 -i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~---~~~e~li~~lP~ 257 (459)
T KOG0326|consen 182 -IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQ---PIVEKLISFLPK 257 (459)
T ss_pred -eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhh---hHHHHHHHhCCc
Confidence 2344444443 33344555668999999988765442 11146789999999998753322 234556666667
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
.+..++.|||= | -....|..+|... |+.|-
T Consensus 258 ~rQillySATF----------------P----~tVk~Fm~~~l~k-----------------------------Py~IN- 287 (459)
T KOG0326|consen 258 ERQILLYSATF----------------P----LTVKGFMDRHLKK-----------------------------PYEIN- 287 (459)
T ss_pred cceeeEEeccc----------------c----hhHHHHHHHhccC-----------------------------cceee-
Confidence 88899999992 1 1122455444321 11111
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
+..+|..+ ....|.+++++ ..|+.-+
T Consensus 288 ----LM~eLtl~------------GvtQyYafV~e--------------------------------------~qKvhCL 313 (459)
T KOG0326|consen 288 ----LMEELTLK------------GVTQYYAFVEE--------------------------------------RQKVHCL 313 (459)
T ss_pred ----hhhhhhhc------------chhhheeeech--------------------------------------hhhhhhH
Confidence 11112111 11122111111 0111111
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEE
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~Vl 585 (997)
..+++.. .-...||||+.+...+.|+..+.+.|+...+||..|-.+.|..+...|+ +|.++.
T Consensus 314 ntLfskL----------------qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr-~G~crn- 375 (459)
T KOG0326|consen 314 NTLFSKL----------------QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR-NGKCRN- 375 (459)
T ss_pred HHHHHHh----------------cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh-ccccce-
Confidence 1111110 1125899999999999999999999999999999999999999999999 888999
Q ss_pred EEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCC
Q 001912 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629 (997)
Q Consensus 586 LlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~ 629 (997)
|++++..-.|||+++.|.||.||.|.|+..|.+++||.+|.|--
T Consensus 376 LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 376 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 89999999999999999999999999999999999999999954
No 94
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=7.7e-15 Score=155.80 Aligned_cols=314 Identities=22% Similarity=0.277 Sum_probs=205.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc----EEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp----~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
+.-|-|...|-..+. |..||=+.-+|+|||..-..-+..-+...| .||+.|+ .|..|-.+.|.-. ........
T Consensus 29 ~pTpiQ~~cIpkILe-Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~al-Gk~l~lK~ 106 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE-GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIAL-GKLLNLKV 106 (442)
T ss_pred CCCchHhhhhHHHhc-ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHh-cccccceE
Confidence 556899999998887 778999999999999865444444444445 6999999 7888887776644 33444455
Q ss_pred EEEccCCCC---cccccCCCeEEEEehhHHHHHHH------hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 275 HLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRK------SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 275 ~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~------~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.++.|..+. ...+.+.++|||+|.+.+..... .+...+..++|+|||.++-+... ......+..-...
T Consensus 107 ~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f---~d~L~~i~e~lP~ 183 (442)
T KOG0340|consen 107 SVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCF---PDILEGIEECLPK 183 (442)
T ss_pred EEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccch---hhHHhhhhccCCC
Confidence 555554432 23455678999999998865432 23335678999999999975432 1223333333333
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
.+..+++|||-- +...+++. . | ... .+...+ ....+....+.|. +
T Consensus 184 ~RQtLlfSATit-d~i~ql~~----~-~----i~k-~~a~~~--------------e~~~~vstvetL~----q------ 228 (442)
T KOG0340|consen 184 PRQTLLFSATIT-DTIKQLFG----C-P----ITK-SIAFEL--------------EVIDGVSTVETLY----Q------ 228 (442)
T ss_pred ccceEEEEeehh-hHHHHhhc----C-C----ccc-ccceEE--------------eccCCCCchhhhh----h------
Confidence 456799999942 21121110 0 0 000 000000 0000000000000 0
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
. ++.++......|.-
T Consensus 229 --------------~--yI~~~~~vkdaYLv------------------------------------------------- 243 (442)
T KOG0340|consen 229 --------------G--YILVSIDVKDAYLV------------------------------------------------- 243 (442)
T ss_pred --------------h--eeecchhhhHHHHH-------------------------------------------------
Confidence 0 11111111222210
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEE
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~Vl 585 (997)
..+... ..+....++||++.+.+...|...|+..++.++.+|+.|+..+|..++.+|+ .+..+|
T Consensus 244 -~~Lr~~-------------~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFr-s~~~~i- 307 (442)
T KOG0340|consen 244 -HLLRDF-------------ENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFR-SNAARI- 307 (442)
T ss_pred -HHHhhh-------------hhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHh-hcCccE-
Confidence 001100 0124678999999999999999999999999999999999999999999999 667888
Q ss_pred EEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCC-eEEE
Q 001912 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNI 634 (997)
Q Consensus 586 LlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k-~V~V 634 (997)
|+.|++++.|||++..+.||++|.|-.|..|++|.||..|-|..- .+.|
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSi 357 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISI 357 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEE
Confidence 999999999999999999999999999999999999998888764 3444
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.66 E-value=2.3e-14 Score=175.44 Aligned_cols=150 Identities=20% Similarity=0.176 Sum_probs=98.8
Q ss_pred ccChhhHHHHHHHHHhc--CCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 199 DVILPFQLEGVRFGLRR--GGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~--~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..|.++|.+++..+... +..++|..++|+|||...+.++...... +.+||++|+ .|..||.+.+.++++. .+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~----~v 218 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGA----PV 218 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC----CE
Confidence 36999999999988763 4568889999999999998776655554 469999999 8999999999998752 24
Q ss_pred EEEccCCCCccc-------ccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCC-Cc-HHHHHHHHHHHhh
Q 001912 275 HLVFGHRNNPVH-------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT-SE-PEEVKAVLDVAAK 345 (997)
Q Consensus 275 ~~~~g~~~~~~~-------~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~-~~-s~~~~al~~l~~~ 345 (997)
.+.++....... .....+|||+|+..+. +.-.++++|||||+|...-.... .. ..+--++......
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 444443222111 1224689999987653 12257899999999975321100 00 0011111111112
Q ss_pred cCcEEEEeccCC
Q 001912 346 VKRIVLLSGTPS 357 (997)
Q Consensus 346 ~~~~llLTGTPi 357 (997)
....+++||||.
T Consensus 294 ~~~~il~SATps 305 (679)
T PRK05580 294 NIPVVLGSATPS 305 (679)
T ss_pred CCCEEEEcCCCC
Confidence 345799999996
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=3.5e-14 Score=184.69 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=90.1
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc-chHHHHHHHHHHHCCCCC-CceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA-ILRLSWAEELERWLPFCL-PADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~-sL~~qW~~Ei~k~~p~~~-~~~i~~ 276 (997)
.+++.|..++..++. |..+++..+||+|||+..+.++..+... ..+|||+|+ .|+.|..+.+..+..... ...+..
T Consensus 79 ~pt~iQ~~~i~~il~-G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 79 EFWSIQKTWAKRILR-GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 589999999998887 6778999999999999444333333333 479999999 899999999999865431 122333
Q ss_pred EccCCCCcc------ccc-CCCeEEEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 277 VFGHRNNPV------HLT-RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 277 ~~g~~~~~~------~~~-~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
+.|...... .+. ..++|+|+|.+.+......+...+++++||||||.+-.
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 434322211 122 24799999999887765554446899999999999853
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.61 E-value=7.4e-14 Score=172.30 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC---CeEEEEeCCCCHHHH----HHHHHHhccCCCc--eEEEEeccccccccCcc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKG---IGFVRIDGNTLPRDR----QSAVHSFQLSNEV--KIAIIGITAGGVGLDFS 599 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~g---i~~~~idG~~s~~eR----~~~i~~F~~~~~~--~VlLlSt~agg~GLNL~ 599 (997)
.+.++|||++.+..+..+.+.|.+.+ +.+..+||.++..+| +++++.|..+++. ..+|++|++...|||+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 57899999999999999999999765 678999999999999 5678899434442 2349999999999999
Q ss_pred cccEEEEecCCCCccHHhhHHHhhhhcCCC
Q 001912 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629 (997)
Q Consensus 600 ~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~ 629 (997)
.+|.+|....| ...+.||.||+||.|..
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57888876555 56899999999999874
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=7.8e-14 Score=164.96 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=74.2
Q ss_pred HHHHHHHHHHc--CCeEEEEeCCCCHHHH--HHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCC---Cc--
Q 001912 543 LDGVQEFISEK--GIGFVRIDGNTLPRDR--QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ---SP-- 613 (997)
Q Consensus 543 ld~L~~~L~~~--gi~~~~idG~~s~~eR--~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~w---np-- 613 (997)
.+.+++.|... +.++.++|+.++..++ +++++.|. +++..| |++|+..+.|+|+...+.|+++|.+- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~-~g~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFA-NGKADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHh-cCCCCE-EEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 46677777765 7899999999877665 89999999 678888 88899999999999999998776652 23
Q ss_pred -------cHHhhHHHhhhhcCCCCeEEEEE
Q 001912 614 -------SLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 614 -------~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
..+.|+.||++|-+..-.|.|..
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 57899999999987766665543
No 99
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.60 E-value=4.3e-15 Score=143.95 Aligned_cols=105 Identities=27% Similarity=0.489 Sum_probs=97.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.++|||+.....++.+.+.|...+..+..++|+++..+|..+++.|+ ++...+ |+++.++|+|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~i-li~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFR-EGEIVV-LVATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHH-cCCCcE-EEEcChhhcCcChhhCCEEEEeC
Confidence 5789999999999999999999998999999999999999999999999 455555 78999999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
++|++..+.|++||++|.||...|.+|
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998777664
No 100
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=3.1e-14 Score=156.76 Aligned_cols=321 Identities=16% Similarity=0.176 Sum_probs=209.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-------Hh-hCCcE-EEEeCc-chHHHHHHHHHHHCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-------FI-SAGSI-LVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-------~~-~~gp~-LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
.+.+|-|-+++.-.+. |..+|=..-+|+|||-.-+.-+.. +. .+||+ ||+||+ +|..|-..|.++|...
T Consensus 244 ~kptpiq~qalptals-grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALS-GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred ccCCcccccccccccc-cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 3566777777766665 444554455999999766543221 11 36785 888999 9999999999999654
Q ss_pred CCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 269 CLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
.....+.++.|.... ...+.....|||+|.+.|...... ..-.+..++|+|||.++-.... -...+.+....+
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGf---e~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGF---EPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcccc---HHHHHHHHhhcC
Confidence 333344444444322 233446789999999999876442 2235778999999999965332 233455555544
Q ss_pred hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHH
Q 001912 345 KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424 (997)
Q Consensus 345 ~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lR 424 (997)
.-+..|++|+|-- +.+..+ .+.+|..| +|
T Consensus 400 pdrQtllFsaTf~-------~kIe~l------------------------------------------ard~L~dp--Vr 428 (731)
T KOG0339|consen 400 PDRQTLLFSATFK-------KKIEKL------------------------------------------ARDILSDP--VR 428 (731)
T ss_pred CcceEEEeeccch-------HHHHHH------------------------------------------HHHHhcCC--ee
Confidence 4566788888821 000000 00111111 00
Q ss_pred HHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhh
Q 001912 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504 (997)
Q Consensus 425 R~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~ 504 (997)
++.-+|.. --.-..+.|.+-.++ ..|+..
T Consensus 429 vVqg~vge-an~dITQ~V~V~~s~--------------------------------------------------~~Kl~w 457 (731)
T KOG0339|consen 429 VVQGEVGE-ANEDITQTVSVCPSE--------------------------------------------------EKKLNW 457 (731)
T ss_pred EEEeehhc-cccchhheeeeccCc--------------------------------------------------HHHHHH
Confidence 10000000 000011112211111 112222
Q ss_pred hhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceE
Q 001912 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584 (997)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~V 584 (997)
+...+. ......|||||..-....+-|...|..+|+++..+||++...+|.+.+..|+ .....|
T Consensus 458 l~~~L~---------------~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fK-kk~~~V 521 (731)
T KOG0339|consen 458 LLRHLV---------------EFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFK-KKRKPV 521 (731)
T ss_pred HHHHhh---------------hhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHh-hcCCce
Confidence 211111 1123568999999999999999999999999999999999999999999999 556677
Q ss_pred EEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 585 lLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
|+.|+++..|+++....+||+||..-+-..+.|+|||.+|-|-+ -..|-|+++...+
T Consensus 522 -lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 522 -LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred -EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88899999999999999999999999999999999999999977 5578888886555
No 101
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.58 E-value=4.8e-14 Score=153.35 Aligned_cols=308 Identities=18% Similarity=0.237 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HHHHh--------hCCc-EEEEeCc-chHHHHHHHHHHHCC---
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AACFI--------SAGS-ILVVCPA-ILRLSWAEELERWLP--- 267 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~~~~--------~~gp-~LIV~P~-sL~~qW~~Ei~k~~p--- 267 (997)
---|..+|-.++. |..++--.-+|+|||..-+.- +..++ +.|| .+|+||+ .|..|-...+.+..-
T Consensus 43 TlIQs~aIplaLE-gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 43 TLIQSSAIPLALE-GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred chhhhcccchhhc-CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 3467778878887 556676778999999986543 22222 1233 6999999 788888777776532
Q ss_pred -CCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 268 -FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 268 -~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
+++..++.-..........+...++|||+|...+...... .......++|+|||..+-..+. ..-.+.+....
T Consensus 122 k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGY---eedlk~l~~~L 198 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGY---EEDLKKLRSHL 198 (569)
T ss_pred HhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhccc---HHHHHHHHHhC
Confidence 2222122111111122233455789999999988775442 2224678999999999875432 22344444444
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMI 423 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~l 423 (997)
.+.-..+++|||--. |+-.+- +-++ ..|+++
T Consensus 199 Pr~~Q~~LmSATl~d----Dv~~LK----------------kL~l-----------------------------~nPviL 229 (569)
T KOG0346|consen 199 PRIYQCFLMSATLSD----DVQALK----------------KLFL-----------------------------HNPVIL 229 (569)
T ss_pred Cchhhheeehhhhhh----HHHHHH----------------HHhc-----------------------------cCCeEE
Confidence 444456899999421 111111 1111 112221
Q ss_pred HHHhhhhhccCCC-ceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 424 RRLKQHLLVQLPP-KRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 424 RR~k~~v~~~LP~-k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
.-+. .++|+ ..-...++..++++.-...-+ .-|+
T Consensus 230 kl~e----~el~~~dqL~Qy~v~cse~DKflllya-----------------------------------------llKL 264 (569)
T KOG0346|consen 230 KLTE----GELPNPDQLTQYQVKCSEEDKFLLLYA-----------------------------------------LLKL 264 (569)
T ss_pred Eecc----ccCCCcccceEEEEEeccchhHHHHHH-----------------------------------------HHHH
Confidence 1111 22331 111222222222222111000 0011
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCc
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEV 582 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~ 582 (997)
. --..|.|||.+..+..-.|.-+|+..|++.+.++|.++..-|..++++|| .|-.
T Consensus 265 ~------------------------LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN-kG~Y 319 (569)
T KOG0346|consen 265 R------------------------LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN-KGLY 319 (569)
T ss_pred H------------------------HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh-Ccce
Confidence 0 01458999999999999999999999999999999999999999999999 7778
Q ss_pred eEEEEecc-------------------------c---------cccccCcccccEEEEecCCCCccHHhhHHHhhhhcCC
Q 001912 583 KIAIIGIT-------------------------A---------GGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 628 (997)
Q Consensus 583 ~VlLlSt~-------------------------a---------gg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ 628 (997)
.++|+|-. + .+.|||++..++||+||.|-++..|++|+||..|-|.
T Consensus 320 divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n 399 (569)
T KOG0346|consen 320 DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNN 399 (569)
T ss_pred eEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCC
Confidence 88666540 1 2579999999999999999999999999999999776
Q ss_pred CCeE
Q 001912 629 TSAV 632 (997)
Q Consensus 629 ~k~V 632 (997)
+-.+
T Consensus 400 ~Gta 403 (569)
T KOG0346|consen 400 KGTA 403 (569)
T ss_pred CCce
Confidence 5444
No 102
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=6.7e-14 Score=158.37 Aligned_cols=316 Identities=18% Similarity=0.188 Sum_probs=196.7
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HHHHhhC--------CcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AACFISA--------GSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~~~~~~--------gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
.....|-|+.++-.++. +..++-+.++|.|||+.-++= +..+... -..+|+.|+ .|+.|-..|+.++..
T Consensus 156 F~~Pt~iq~~aipvfl~-~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 156 FDEPTPIQKQAIPVFLE-KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCCCcccchhhhhhhc-ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 45678999999988887 445788889999999876653 2333221 147999999 899999999999862
Q ss_pred C-CCCceEEEEccC---CCCc-ccccCCCeEEEEehhHHHHHHHh----hhhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 268 F-CLPADIHLVFGH---RNNP-VHLTRFPRVVVISYTMLHRLRKS----MIEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 268 ~-~~~~~i~~~~g~---~~~~-~~~~~~~~VvItTy~~l~~~~~~----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
. .....++..... .... ......++|.|.|+..+...... +.-.....+|+|||.++.+. ......
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-----~~f~~Q 309 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-----EFFVEQ 309 (593)
T ss_pred CCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-----hhHHHH
Confidence 1 111111111111 1111 11123568999999988776543 23346778999999999643 111222
Q ss_pred HHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 339 VLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 339 l~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
+..+. +.+.- |+..-. -|. ......++++..+..
T Consensus 310 la~I~----------------------sac~s--~~i~~a---~FS-------------------at~~~~VEE~~~~i~ 343 (593)
T KOG0344|consen 310 LADIY----------------------SACQS--PDIRVA---LFS-------------------ATISVYVEEWAELIK 343 (593)
T ss_pred HHHHH----------------------HHhcC--cchhhh---hhh-------------------ccccHHHHHHHHHhh
Confidence 22222 11110 111100 000 000011222222211
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
.+. ..+.+-..+.+..... ..+.+-...
T Consensus 344 ---------~~~---------~~vivg~~~sa~~~V~----------------------------------QelvF~gse 371 (593)
T KOG0344|consen 344 ---------SDL---------KRVIVGLRNSANETVD----------------------------------QELVFCGSE 371 (593)
T ss_pred ---------ccc---------eeEEEecchhHhhhhh----------------------------------hhheeeecc
Confidence 110 1112222222111000 001111112
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHH-HHcCCeEEEEeCCCCHHHHHHHHHHhc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFI-SEKGIGFVRIDGNTLPRDRQSAVHSFQ 577 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L-~~~gi~~~~idG~~s~~eR~~~i~~F~ 577 (997)
..|+-++.+.+..- -.-.+|||.|+.+-+..|.+.| .-.++.+..|||..+..+|.+.+++|+
T Consensus 372 ~~K~lA~rq~v~~g----------------~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 372 KGKLLALRQLVASG----------------FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred hhHHHHHHHHHhcc----------------CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh
Confidence 33444455555431 2346999999999999999999 566999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCC-eEEEE
Q 001912 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIY 635 (997)
Q Consensus 578 ~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k-~V~Vy 635 (997)
.|++.| |++|...+.|++|.+++.||+||.|-+-..|..++||.+|-|+.- .+++|
T Consensus 436 -~g~Iwv-LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 436 -IGKIWV-LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred -ccCeeE-EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 889999 999999999999999999999999999999999999999999874 34444
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.7e-13 Score=163.92 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=99.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc-------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS------- 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~------- 599 (997)
...|..|||||.+....+.|.++|...|+++..++|.....+|+.+.+.|+ .|. | +++|..+|.|+|+.
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~-~G~--V-tIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGR-PGA--V-TIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCC-CCc--E-EEeccCccCCcceecCCchhh
Confidence 467999999999999999999999999999999999999999999999999 453 5 89999999999975
Q ss_pred -------------------------------cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 600 -------------------------------SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 600 -------------------------------~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
+.=+||--+..-|-..+.|..||++|.|..-....|. |+|+.++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~ 591 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLM 591 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHH
Confidence 2347899999999999999999999999886655553 5566555
Q ss_pred HH
Q 001912 649 QN 650 (997)
Q Consensus 649 ~~ 650 (997)
.+
T Consensus 592 ~~ 593 (896)
T PRK13104 592 RI 593 (896)
T ss_pred HH
Confidence 43
No 104
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.55 E-value=3.9e-14 Score=157.68 Aligned_cols=332 Identities=18% Similarity=0.235 Sum_probs=195.5
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHH-HHHHHHHhh-------------CC--c-EEEEeCc-chHHHHHHH
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA-IAIAACFIS-------------AG--S-ILVVCPA-ILRLSWAEE 261 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqa-ial~~~~~~-------------~g--p-~LIV~P~-sL~~qW~~E 261 (997)
...|.|.-.+--+++..-.+|-|.|+|+|||+.- |-++..+.. .+ | .|||+|+ .|..|-...
T Consensus 203 ~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~H 282 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQH 282 (731)
T ss_pred CCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHH
Confidence 3445555555455542246788899999999863 333332211 11 2 6999999 899998888
Q ss_pred HHHHCCCCCCceEEEEccCCCC--cccccCCCeEEEEehhHHHHHHHh----hhh-ccccEEEeccccccccCCCCCcHH
Q 001912 262 LERWLPFCLPADIHLVFGHRNN--PVHLTRFPRVVVISYTMLHRLRKS----MIE-QDWALLIVDESHHVRCSKRTSEPE 334 (997)
Q Consensus 262 i~k~~p~~~~~~i~~~~g~~~~--~~~~~~~~~VvItTy~~l~~~~~~----l~~-~~~~~VIvDEaH~iKN~~~~~~s~ 334 (997)
|..-.+.-......+..|-.-. -.-+...++|||+|.+.|...... +.+ .+..++|+||+.++-.. +...
T Consensus 283 l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek---ghF~ 359 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK---GHFE 359 (731)
T ss_pred HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh---ccHH
Confidence 8887664332223333332211 122445789999999999875432 211 35689999999998531 1122
Q ss_pred HHHHHHHHHh-----hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhcc
Q 001912 335 EVKAVLDVAA-----KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVR 409 (997)
Q Consensus 335 ~~~al~~l~~-----~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (997)
....++..+. .-+..+..|||--.. .+. | +.... .... . .
T Consensus 360 Els~lL~~L~e~~~~~qrQTlVFSATlt~~---------~~~-~--~~~~~----------------k~~~-k---~--- 404 (731)
T KOG0347|consen 360 ELSKLLKHLNEEQKNRQRQTLVFSATLTLV---------LQQ-P--LSSSR----------------KKKD-K---E--- 404 (731)
T ss_pred HHHHHHHHhhhhhcccccceEEEEEEeehh---------hcC-h--hHHhh----------------hccc-h---h---
Confidence 2333333322 123458888884211 000 0 00000 0000 0 0
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcc
Q 001912 410 LEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL 489 (997)
Q Consensus 410 ~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (997)
.++.. -|.++.+.+.-.-+|+ .+++++.+.-.- .+.+..- .| ..+
T Consensus 405 -~~~~~------kiq~Lmk~ig~~~kpk-----iiD~t~q~~ta~-~l~Es~I-------------------~C---~~~ 449 (731)
T KOG0347|consen 405 -DELNA------KIQHLMKKIGFRGKPK-----IIDLTPQSATAS-TLTESLI-------------------EC---PPL 449 (731)
T ss_pred -hhhhH------HHHHHHHHhCccCCCe-----eEecCcchhHHH-HHHHHhh-------------------cC---Ccc
Confidence 01111 1122222332222222 234444332111 1110000 00 000
Q ss_pred cccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Q 001912 490 GKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDR 569 (997)
Q Consensus 490 ~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR 569 (997)
. .++..-+. +..-..+.||||+..+.+..|.-+|...+++..-+|..|...+|
T Consensus 450 e---------------KD~ylyYf------------l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 450 E---------------KDLYLYYF------------LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQR 502 (731)
T ss_pred c---------------cceeEEEE------------EeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 0 00111100 11224689999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 570 QSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 570 ~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
-+.+++|.+.++ .+|+.|++++.|||+++..|||||..|-+...|.+|-||..|-+. ..|.|
T Consensus 503 LknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 503 LKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred HHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC-CCeEE
Confidence 999999995433 349999999999999999999999999999999999999999764 34444
No 105
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=7.4e-15 Score=129.19 Aligned_cols=78 Identities=33% Similarity=0.601 Sum_probs=73.2
Q ss_pred HHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcC
Q 001912 548 EFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627 (997)
Q Consensus 548 ~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiG 627 (997)
++|+..|+.+..+||+++..+|+.+++.|+ .++..| |++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~-~~~~~v-li~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFN-SGEIRV-LIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHH-TTSSSE-EEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhh-ccCceE-EEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999 566666 888899999999999999999999999999999999999988
No 106
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.52 E-value=1.3e-13 Score=142.95 Aligned_cols=158 Identities=25% Similarity=0.300 Sum_probs=113.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..++|||.+++..++.....+++..++|+|||..++.++...... .++||++|+ .+..||..++.++++.......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 468999999999988643678999999999999877766655443 679999996 8999999999998875421223
Q ss_pred EEEccCCC--CcccccCCC-eEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 275 HLVFGHRN--NPVHLTRFP-RVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 275 ~~~~g~~~--~~~~~~~~~-~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
....+... ......... +|+++||+.+...... +...+++++|+||+|++.+. .....+..+........++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~~~~~~~~~~~~~ 163 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG---GFGDQLEKLLKLLPKNVQL 163 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC---CcHHHHHHHHHhCCccceE
Confidence 33333221 111122233 8999999999887665 44567899999999999742 2234455555544457889
Q ss_pred EEEeccCCCC
Q 001912 350 VLLSGTPSLS 359 (997)
Q Consensus 350 llLTGTPi~n 359 (997)
+++||||..+
T Consensus 164 v~~saT~~~~ 173 (201)
T smart00487 164 LLLSATPPEE 173 (201)
T ss_pred EEEecCCchh
Confidence 9999999743
No 107
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.51 E-value=9.3e-13 Score=158.14 Aligned_cols=337 Identities=18% Similarity=0.235 Sum_probs=208.5
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-h-------hCCc-EEEEeCc-chHHHHHHHHHHHCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-I-------SAGS-ILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~-------~~gp-~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
+..++|-|..|+-..+. |..+|-...+|+|||+--+..+... . ..|| .||+||+ .|..|-.+++.+|.-
T Consensus 385 y~k~~~IQ~qAiP~Ims-GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k 463 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS-GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK 463 (997)
T ss_pred CCCCcchhhhhcchhcc-CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 34789999999877666 6678888899999999885543322 2 2467 5999999 899998888888865
Q ss_pred CCCCceEEEEccCCC---CcccccCCCeEEEEehhHHHHHHHh----h-hhccccEEEeccccccccCCCCCcHHHHHHH
Q 001912 268 FCLPADIHLVFGHRN---NPVHLTRFPRVVVISYTMLHRLRKS----M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~---~~~~~~~~~~VvItTy~~l~~~~~~----l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al 339 (997)
.+.. .+..++|+.+ ...++.+...|+|+|.+.+....-. + .-.+..+||+|||.++-..... .+.+. |
T Consensus 464 ~l~i-r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfe--Pq~~~-I 539 (997)
T KOG0334|consen 464 LLGI-RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFE--PQITR-I 539 (997)
T ss_pred hcCc-eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccC--cccch-H
Confidence 4322 2333334332 3345566789999999877653221 1 1135669999999998532211 12222 1
Q ss_pred HHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 340 ~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
+.-...-+..++.|+| |
T Consensus 540 i~nlrpdrQtvlfSat---------------------------f------------------------------------ 556 (997)
T KOG0334|consen 540 LQNLRPDRQTVLFSAT---------------------------F------------------------------------ 556 (997)
T ss_pred Hhhcchhhhhhhhhhh---------------------------h------------------------------------
Confidence 1111111111111221 0
Q ss_pred HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 420 ~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
|-++.-++..|+. +|-- +.|.. +. ..++.....-.+. ....
T Consensus 557 pr~m~~la~~vl~-~Pve----iiv~~--------~s------------------------vV~k~V~q~v~V~--~~e~ 597 (997)
T KOG0334|consen 557 PRSMEALARKVLK-KPVE----IIVGG--------RS------------------------VVCKEVTQVVRVC--AIEN 597 (997)
T ss_pred hHHHHHHHHHhhc-CCee----EEEcc--------ce------------------------eEeccceEEEEEe--cCch
Confidence 1122233334444 3321 11110 00 0000000000000 0012
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
.|+..+.+++.. .....++|||++...-+|.|.+-|.+.|+....+||+.+..+|...++.|+ +
T Consensus 598 eKf~kL~eLl~e---------------~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK-~ 661 (997)
T KOG0334|consen 598 EKFLKLLELLGE---------------RYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK-N 661 (997)
T ss_pred HHHHHHHHHHHH---------------HhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh-c
Confidence 233333333332 123679999999999999999999999999999999999999999999999 5
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
+.+.+ |+.|.....||++.....||+||.+--...|..|.||.+|.|.+- .-|.|+.. -|..+-..+.+.+..+.
T Consensus 662 ~~~~L-LvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p--~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 662 GVVNL-LVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP--DQLKYAGDLCKALELSK 736 (997)
T ss_pred cCceE-EEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh--HHhhhHHHHHHHHHhcc
Confidence 55555 888999999999999999999999998899999999999988776 44455555 23333334455554443
Q ss_pred hhh
Q 001912 660 SAT 662 (997)
Q Consensus 660 ~~l 662 (997)
...
T Consensus 737 ~~~ 739 (997)
T KOG0334|consen 737 QPV 739 (997)
T ss_pred CCC
Confidence 333
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.4e-12 Score=157.75 Aligned_cols=113 Identities=13% Similarity=0.252 Sum_probs=97.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc-------
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS------- 600 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~------- 600 (997)
..+..|||||......+.|.+.|...|+++..++|. ..+|+..+..|. .+...| +++|..+|.|+|+.-
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~A-g~~g~V-tIATNmAGRGtDI~LgGn~~~~ 503 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQA-GRPGAV-TIATNMAGRGTDIKLGGNPEML 503 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhc-CCCceE-EEecccccCCcCccCCCchhhh
Confidence 568899999999999999999999999999999996 578999999998 667778 899999999999743
Q ss_pred -------------------------------ccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHH
Q 001912 601 -------------------------------AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 601 -------------------------------A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~ 649 (997)
.=|||..+.+-|-..+.|..||++|.|..-....|. |+|+.++.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 504 AAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 457999999999999999999999999886665553 45555553
No 109
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.48 E-value=7.5e-13 Score=162.95 Aligned_cols=308 Identities=18% Similarity=0.230 Sum_probs=210.6
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
...||-|.++|. ++..|.-+++-..+|.||++.-..=+ ++..|-+|||.|. ||+......+.+.. + ....+
T Consensus 263 ~~FR~~Q~eaI~-~~l~Gkd~fvlmpTG~GKSLCYQlPA--~l~~gitvVISPL~SLm~DQv~~L~~~~--I---~a~~L 334 (941)
T KOG0351|consen 263 KGFRPNQLEAIN-ATLSGKDCFVLMPTGGGKSLCYQLPA--LLLGGVTVVISPLISLMQDQVTHLSKKG--I---PACFL 334 (941)
T ss_pred ccCChhHHHHHH-HHHcCCceEEEeecCCceeeEeeccc--cccCCceEEeccHHHHHHHHHHhhhhcC--c---ceeec
Confidence 478999999998 55557789999999999998763222 2345678999998 88877665553211 1 12222
Q ss_pred ccCCCCc------cccc---CCCeEEEEehhHHHHHHH---hhhh-cc---ccEEEeccccccccCCCCCcHHHHHHHHH
Q 001912 278 FGHRNNP------VHLT---RFPRVVVISYTMLHRLRK---SMIE-QD---WALLIVDESHHVRCSKRTSEPEEVKAVLD 341 (997)
Q Consensus 278 ~g~~~~~------~~~~---~~~~VvItTy~~l~~~~~---~l~~-~~---~~~VIvDEaH~iKN~~~~~~s~~~~al~~ 341 (997)
.+..... ..+. ...+|+-+|.+.+..... .+.. .. ..++||||||....+.-.. ..-|+.+..
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF-Rp~Yk~l~~ 413 (941)
T KOG0351|consen 335 SSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF-RPSYKRLGL 413 (941)
T ss_pred cccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc-cHHHHHHHH
Confidence 2322221 0111 145788899998876322 2221 22 6899999999987644322 122444444
Q ss_pred HHhhcC--cEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 342 VAAKVK--RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 342 l~~~~~--~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
+..+.+ -.++||||--..--.|+...|++-+|.++.+..
T Consensus 414 l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf--------------------------------------- 454 (941)
T KOG0351|consen 414 LRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF--------------------------------------- 454 (941)
T ss_pred HHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC---------------------------------------
Confidence 433332 369999998777777888888777776554422
Q ss_pred HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 420 ~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
.++.....|....+.. .
T Consensus 455 --------------nR~NL~yeV~~k~~~~---~---------------------------------------------- 471 (941)
T KOG0351|consen 455 --------------NRPNLKYEVSPKTDKD---A---------------------------------------------- 471 (941)
T ss_pred --------------CCCCceEEEEeccCcc---c----------------------------------------------
Confidence 0000001111000000 0
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
+..+.+++. ...+++-.||||..+.+.+.+...|...|++...+|.+++..+|+.+.+.|. .
T Consensus 472 --~~~~~~~~~---------------~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~-~ 533 (941)
T KOG0351|consen 472 --LLDILEESK---------------LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM-S 533 (941)
T ss_pred --hHHHHHHhh---------------hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh-c
Confidence 000111111 1245678999999999999999999999999999999999999999999999 6
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
++++| ++.|=|.|.|||-.....||||.+|-+-.-|.|..|||+|.|+...+..|+
T Consensus 534 ~~~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 534 DKIRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CCCeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 67888 777889999999999999999999999999999999999999988766554
No 110
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.46 E-value=7.9e-12 Score=157.57 Aligned_cols=108 Identities=12% Similarity=0.187 Sum_probs=87.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCe---EEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIG---FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~---~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI 605 (997)
...++|||+.....++.+.+.|...+++ +.-+||+++.++|.++++. .+..+| |++|.++++||++.+.++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkI-IVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRI-VLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeE-EEeccHHhhccccCcceEEE
Confidence 3567999999999999999999988765 5678999999999987664 345566 99999999999999999999
Q ss_pred Eec---------------CCCCc---cHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 606 FLE---------------LPQSP---SLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 606 ~~D---------------~~wnp---~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
.++ ++-.| +.+.||.||++|.+ +-.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 975 34333 67899999998873 5567888876543
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=2.3e-12 Score=155.31 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=88.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc---ccc--
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS---SAQ-- 602 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~---~A~-- 602 (997)
..+..|||||.+....+.|...|...|+++..++|.+...++.-+...++ . ..| +++|..+|.|+|+. ...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~-~--g~V-tIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ-R--GAV-TIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC-C--ceE-EEEeccccCCCCCCCCcchhhh
Confidence 57899999999999999999999999999999999997666666666665 3 335 88999999999994 567
Q ss_pred ---EEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 603 ---NVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 603 ---~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
+||.++.|-|...+.|+.||++|.|..-..
T Consensus 514 GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 514 GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999999999999999999999987554
No 112
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=5.2e-13 Score=130.07 Aligned_cols=134 Identities=25% Similarity=0.266 Sum_probs=93.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCccc---ccCC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH---LTRF 290 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~---~~~~ 290 (997)
++++..++|+|||.+++.++..+.. .++++|+||+ .+..+|.+.+.++... ...+.+..+....... ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCC
Confidence 4799999999999999999887764 4789999999 5666778888888763 2344444443332211 2346
Q ss_pred CeEEEEehhHHHHHHHhh--hhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 291 PRVVVISYTMLHRLRKSM--IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 291 ~~VvItTy~~l~~~~~~l--~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
.+|+|+||+.+....... ....+++||+||+|.+.+... ...............+++++||||
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~---~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF---GLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch---HHHHHHHHhhCCccceEEEEeccC
Confidence 789999999887755432 245899999999999975321 111111222233567889999998
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=5.6e-12 Score=152.22 Aligned_cols=115 Identities=14% Similarity=0.226 Sum_probs=98.4
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc-------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS------- 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~------- 599 (997)
...|..|||||......+.|..+|...|+++..+++..+..+|..+.+.|+ .|. | +++|..+|.|+|+.
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~-~G~--V-tIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR-TGA--V-TIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC-CCc--E-EEecCCcCCCcceecCCchHH
Confidence 467999999999999999999999999999999999999999999999999 454 4 89999999999975
Q ss_pred ------------------------------cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHH
Q 001912 600 ------------------------------SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQ 649 (997)
Q Consensus 600 ------------------------------~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~ 649 (997)
+.=+||..+..-|-..+.|..||++|.|..-....|. |+|+.++.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r 596 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMR 596 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHH
Confidence 3347999999999999999999999999876544443 45555554
Q ss_pred H
Q 001912 650 N 650 (997)
Q Consensus 650 ~ 650 (997)
+
T Consensus 597 ~ 597 (908)
T PRK13107 597 I 597 (908)
T ss_pred H
Confidence 3
No 114
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.2e-12 Score=141.48 Aligned_cols=312 Identities=18% Similarity=0.253 Sum_probs=199.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCcc-hHHHHHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPAI-LRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~s-L~~qW~~Ei~k~~p~~~~~~i 274 (997)
++-.-|..||.=.++ |..++.-...|+|||..-...+..... .--+||++|+. |..|-..-...+.... ...+
T Consensus 48 kPSaIQqraI~p~i~-G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~-~~~v 125 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIK-GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHM-DVSV 125 (397)
T ss_pred CchHHHhcccccccc-CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccc-ceee
Confidence 455678888866665 677888889999999995444443322 23489999995 4444444444444332 2334
Q ss_pred EEEccCCCCc-cc--c-cCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 275 HLVFGHRNNP-VH--L-TRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 275 ~~~~g~~~~~-~~--~-~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
+...|..... .. + .....||+.|...+....+ .+......+.|+|||..+.... -...+.++.......-+
T Consensus 126 ~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g---fkdqI~~if~~lp~~vQ 202 (397)
T KOG0327|consen 126 HACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG---FKDQIYDIFQELPSDVQ 202 (397)
T ss_pred eeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc---hHHHHHHHHHHcCcchh
Confidence 4333322221 11 1 2246899999977655332 4555678999999999987533 23446666666555557
Q ss_pred EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 349 ~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
++++|||-- .|+. +..+.|.. .|+.+-+-|+
T Consensus 203 v~l~SAT~p----~~vl----------------~vt~~f~~-----------------------------~pv~i~vkk~ 233 (397)
T KOG0327|consen 203 VVLLSATMP----SDVL----------------EVTKKFMR-----------------------------EPVRILVKKD 233 (397)
T ss_pred heeecccCc----HHHH----------------HHHHHhcc-----------------------------CceEEEecch
Confidence 899999932 1110 11111110 0100000000
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
+ |.-+-....++... ..+|+.-+.++
T Consensus 234 ~----ltl~gikq~~i~v~--------------------------------------------------k~~k~~~l~dl 259 (397)
T KOG0327|consen 234 E----LTLEGIKQFYINVE--------------------------------------------------KEEKLDTLCDL 259 (397)
T ss_pred h----hhhhheeeeeeecc--------------------------------------------------ccccccHHHHH
Confidence 0 00000000000000 00033333333
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
.. .-...+||++..+-++.|.+.|...|+....+||.+...+|..++..|+ .++.+| |++
T Consensus 260 ~~------------------~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~-~gssrv-lIt 319 (397)
T KOG0327|consen 260 YR------------------RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR-SGSSRV-LIT 319 (397)
T ss_pred HH------------------hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh-cCCceE-Eee
Confidence 32 2346899999999999999999999999999999999999999999999 788999 999
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
+...+.|++++..+.||.||+|-|...|..++||++|.|-+- .+..++++.
T Consensus 320 tdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 320 TDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 999999999999999999999999999999999999999653 233444444
No 115
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.43 E-value=8.3e-11 Score=125.12 Aligned_cols=308 Identities=20% Similarity=0.289 Sum_probs=193.1
Q ss_pred hccChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 198 LDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.++|-|+|+.+..-++ ++....|+..-+|+|||=+....+...+ ..+.+.|..|. .++..-...+..-++..
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~--- 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNC--- 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccC---
Confidence 4689999999988764 3455678888999999988776555544 45688999998 66666666666655543
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llL 352 (997)
+|...+|.++.... .+-||-||++.+ +.. ..||++||||...+-= ..+.....++.......--.+.|
T Consensus 172 ~I~~Lyg~S~~~fr---~plvVaTtHQLl-rFk-----~aFD~liIDEVDAFP~---~~d~~L~~Av~~ark~~g~~Iyl 239 (441)
T COG4098 172 DIDLLYGDSDSYFR---APLVVATTHQLL-RFK-----QAFDLLIIDEVDAFPF---SDDQSLQYAVKKARKKEGATIYL 239 (441)
T ss_pred CeeeEecCCchhcc---ccEEEEehHHHH-HHH-----hhccEEEEeccccccc---cCCHHHHHHHHHhhcccCceEEE
Confidence 46667776654432 333445555555 332 4689999999998731 12333445555554445567999
Q ss_pred eccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhc
Q 001912 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV 432 (997)
Q Consensus 353 TGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~ 432 (997)
||||-..-..++ .-+-+. ...+-+|... .
T Consensus 240 TATp~k~l~r~~-------~~g~~~-----------------------------------------~~klp~RfH~---~ 268 (441)
T COG4098 240 TATPTKKLERKI-------LKGNLR-----------------------------------------ILKLPARFHG---K 268 (441)
T ss_pred ecCChHHHHHHh-------hhCCee-----------------------------------------EeecchhhcC---C
Confidence 999952100000 000000 0001111111 1
Q ss_pred cCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhh-hhhhhhcc
Q 001912 433 QLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLS-GFREWLSI 511 (997)
Q Consensus 433 ~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~-~~~~~l~~ 511 (997)
.||-.. .+++.. -. +. ....|++ .+..|+..
T Consensus 269 pLpvPk--f~w~~~--~~--------k~------------------------------------l~r~kl~~kl~~~lek 300 (441)
T COG4098 269 PLPVPK--FVWIGN--WN--------KK------------------------------------LQRNKLPLKLKRWLEK 300 (441)
T ss_pred CCCCCc--eEEecc--HH--------HH------------------------------------hhhccCCHHHHHHHHH
Confidence 233221 111110 00 00 0011111 24456654
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt 589 (997)
+ ...+..++||.....+++.....|+.. ......+|... ..|.+.|++|+ +|...+ |++|
T Consensus 301 q--------------~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR-~G~~~l-LiTT 362 (441)
T COG4098 301 Q--------------RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFR-DGKITL-LITT 362 (441)
T ss_pred H--------------HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHH-cCceEE-EEEe
Confidence 2 245788999999999999999999553 33345566665 67999999999 888888 8999
Q ss_pred cccccccCcccccEEEEec--CCCCccHHhhHHHhhhhcCCCCeEEEEEE
Q 001912 590 TAGGVGLDFSSAQNVVFLE--LPQSPSLMLQAEDRAHRRGQTSAVNIYIF 637 (997)
Q Consensus 590 ~agg~GLNL~~A~~VI~~D--~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~L 637 (997)
..+..|++++..++.|+-. +-++-+.+.|--||++|--..-.-.|+.|
T Consensus 363 TILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 363 TILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 9999999999999988754 34899999999999999665443334333
No 116
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=4.9e-13 Score=118.08 Aligned_cols=81 Identities=27% Similarity=0.514 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhh
Q 001912 545 GVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAH 624 (997)
Q Consensus 545 ~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~ 624 (997)
.|.++|...++.+..+||+++..+|..+++.|++ +...| |++|.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-li~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKIKV-LVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCCeE-EEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4678888889999999999999999999999994 45544 889999999999999999999999999999999999999
Q ss_pred hcC
Q 001912 625 RRG 627 (997)
Q Consensus 625 RiG 627 (997)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 117
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.40 E-value=6.4e-11 Score=150.00 Aligned_cols=107 Identities=10% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC---CeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKG---IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~g---i~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~ 606 (997)
...+|||......++.+.+.|...+ +.+.-+||+++.++|+++++.+ +..+| |+||..+++||++.+..+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkI-VLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRI-VLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceE-EEeccHHHhccccCCeeEEEe
Confidence 4689999999999999999998764 4577899999999999885443 23455 999999999999999999999
Q ss_pred ecCC------------------CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 607 LELP------------------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 607 ~D~~------------------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
++.. -+.+.+.||.||++|.| +-.+|+|+++...
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 8742 13468999999999987 5568899886544
No 118
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.39 E-value=1.4e-11 Score=133.55 Aligned_cols=330 Identities=19% Similarity=0.228 Sum_probs=210.5
Q ss_pred hhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEcc-C
Q 001912 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFG-H 280 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g-~ 280 (997)
|-|..++.-.++++..+.+..++|.||++.--.-+ ++..|-++||.|. .|+....+.+.+.--.....+-.+... +
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPa--L~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER 100 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPA--LVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVER 100 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchH--HHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHH
Confidence 67999999999988899999999999998653322 2346777888888 788777777776411000000000000 0
Q ss_pred CCCc---ccccCCCeEEEEehhHHHH-----HHHhhhh-ccccEEEeccccccccCCC--CCcHHHHHHHHHHHhhcCcE
Q 001912 281 RNNP---VHLTRFPRVVVISYTMLHR-----LRKSMIE-QDWALLIVDESHHVRCSKR--TSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 281 ~~~~---~~~~~~~~VvItTy~~l~~-----~~~~l~~-~~~~~VIvDEaH~iKN~~~--~~~s~~~~al~~l~~~~~~~ 349 (997)
+.-. ........++-+|.++... ..+.|.+ ....+++|||||..-.++- .++..+.-++......++ .
T Consensus 101 ~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vp-w 179 (641)
T KOG0352|consen 101 SRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVP-W 179 (641)
T ss_pred HHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCc-e
Confidence 0000 1111234677777776543 3334433 4578999999999864332 244444445555544444 4
Q ss_pred EEEeccCCCCChhHHHHHHHhhccC-CccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPG-LLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
+.||||....--+|+|.+|.+-.|- .|.+. .|... .|.| -..|+
T Consensus 180 vALTATA~~~VqEDi~~qL~L~~PVAiFkTP--~FR~N-------------LFYD--------------------~~~K~ 224 (641)
T KOG0352|consen 180 VALTATANAKVQEDIAFQLKLRNPVAIFKTP--TFRDN-------------LFYD--------------------NHMKS 224 (641)
T ss_pred EEeecccChhHHHHHHHHHhhcCcHHhccCc--chhhh-------------hhHH--------------------HHHHH
Confidence 8999998877788999999877663 23221 12110 0000 00111
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
.+...+ ..+. .+.....+.. +.+
T Consensus 225 ~I~D~~------------------------~~La----------------------------DF~~~~LG~~--~~~--- 247 (641)
T KOG0352|consen 225 FITDCL------------------------TVLA----------------------------DFSSSNLGKH--EKA--- 247 (641)
T ss_pred HhhhHh------------------------HhHH----------------------------HHHHHhcCCh--hhh---
Confidence 110000 0000 0000000000 000
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
... .+.-..--||||..++..+.+.-.|..+||+...+|.+....+|..+.+.+- ++++.| |+.
T Consensus 248 -~~~-------------~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM-~~~~Pv-I~A 311 (641)
T KOG0352|consen 248 -SQN-------------KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM-NNEIPV-IAA 311 (641)
T ss_pred -hcC-------------CCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh-cCCCCE-EEE
Confidence 000 0122345799999999999999999999999999999999999999999998 667888 788
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHH
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe 645 (997)
|-+.|.|+|=++...||+.+++-|-+-|-|--||++|.|-..-+..|| ..+..+.
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY--sR~D~~~ 366 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY--SRQDKNA 366 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee--cccchHH
Confidence 889999999999999999999999999999999999999777676665 3444443
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=3.4e-11 Score=143.56 Aligned_cols=350 Identities=17% Similarity=0.150 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-----------CCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-----------AGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-----------~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
|---|-+...-+++.+.++|++.++|+|||..|...+..... .-+++-|+|. +|.....+.+.+-+..
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 334566666668888999999999999999999765554433 2379999998 7776655554443331
Q ss_pred CCCceEEEEccCCCCcccccCCCeEEEEehhHHHHH----H-HhhhhccccEEEeccccccccCCCCCcHH----HHHHH
Q 001912 269 CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL----R-KSMIEQDWALLIVDESHHVRCSKRTSEPE----EVKAV 339 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~----~-~~l~~~~~~~VIvDEaH~iKN~~~~~~s~----~~~al 339 (997)
+ ...+.-+.|.......-....+|+|||++.+.-. . +.-......+|||||.|.+....+ +.-. +...+
T Consensus 191 ~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RG-pvlEtiVaRtlr~ 268 (1230)
T KOG0952|consen 191 L-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRG-PVLETIVARTLRL 268 (1230)
T ss_pred c-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCccc-chHHHHHHHHHHH
Confidence 1 1123334443322222234679999999876321 0 011124678999999999975321 1111 11111
Q ss_pred HHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 340 ~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
.......=|.++||||- +| ..|+. .||.-...... +.|...|..........+.... .+.....
T Consensus 269 vessqs~IRivgLSATl-PN-~eDvA---~fL~vn~~~gl-fsFd~~yRPvpL~~~~iG~k~~-----~~~~~~~----- 332 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATL-PN-YEDVA---RFLRVNPYAGL-FSFDQRYRPVPLTQGFIGIKGK-----KNRQQKK----- 332 (1230)
T ss_pred HHhhhhheEEEEeeccC-CC-HHHHH---HHhcCCCccce-eeecccccccceeeeEEeeecc-----cchhhhh-----
Confidence 11222345789999993 23 44443 44443322111 1344444332221112111110 0000000
Q ss_pred HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 420 ~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
.|-.--.+.+...+-......+++....+..+..+.+.+.....+..+
T Consensus 333 -~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~------------------------------- 380 (1230)
T KOG0952|consen 333 -NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKD------------------------------- 380 (1230)
T ss_pred -hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCccc-------------------------------
Confidence 000011122333444555566666665555555444433322111000
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
.. .++. -.+.|.+.+ ..|+ ..-|.++.-++|+..-+.|. .
T Consensus 381 --------------~f------------~~~~----------~~k~l~elf-~~g~--~iHhAGm~r~DR~l~E~~F~-~ 420 (1230)
T KOG0952|consen 381 --------------LF------------LPSP----------RNKQLKELF-QQGM--GIHHAGMLRSDRQLVEKEFK-E 420 (1230)
T ss_pred --------------cc------------CCCh----------hhHHHHHHH-Hhhh--hhcccccchhhHHHHHHHHh-c
Confidence 00 0000 112233322 2333 34678899999999999999 8
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccH----------HhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSL----------MLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~----------~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|.++| |.+|....-|+||++-..+|--...|++.. ..|-.|||+|.+=.+.-..+..-+.+
T Consensus 421 G~i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 421 GHIKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred CCceE-EEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 88999 999999999999997655655555566554 78999999998744443344333333
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.36 E-value=7e-12 Score=127.34 Aligned_cols=153 Identities=24% Similarity=0.326 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-hC--CcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEc
Q 001912 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-SA--GSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVF 278 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~~--gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~ 278 (997)
|+|.+++..++ .|+.+|+..++|+|||..++..+.... +. ..++|++|. +++.|-.+++.+++... ...+....
T Consensus 2 ~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~ 79 (169)
T PF00270_consen 2 PLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVVLLH 79 (169)
T ss_dssp HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEEEES
T ss_pred HHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccc-cccccccc
Confidence 79999999888 477899999999999999986554433 32 379999998 89999999999998762 22344444
Q ss_pred cCCCCc----ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--cCcEE
Q 001912 279 GHRNNP----VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--VKRIV 350 (997)
Q Consensus 279 g~~~~~----~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~~~~l 350 (997)
+..... ..+....+|+|+|++.+...... +.-.+.++||+||+|.+-.. ........+...... ..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~---~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE---TFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT---THHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc---cHHHHHHHHHHHhcCCCCCcEE
Confidence 433211 11234689999999999886654 11234899999999999642 122334455544422 25689
Q ss_pred EEeccCCCCCh
Q 001912 351 LLSGTPSLSRP 361 (997)
Q Consensus 351 lLTGTPi~n~~ 361 (997)
++||||. .++
T Consensus 157 ~~SAT~~-~~~ 166 (169)
T PF00270_consen 157 LLSATLP-SNV 166 (169)
T ss_dssp EEESSST-HHH
T ss_pred EEeeCCC-hhH
Confidence 9999997 443
No 121
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.35 E-value=1.1e-11 Score=130.23 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=105.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HHHHhhC-----CcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AACFISA-----GSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~~~~~~-----gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.+++||.+++..+++ |.++++..++|+|||+.++.. +..+... .+++||+|+ .|+.||...+.++.... ..
T Consensus 21 ~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~ 98 (203)
T cd00268 21 KPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT-NL 98 (203)
T ss_pred CCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC-Cc
Confidence 689999999988887 778999999999999986543 3333332 259999999 89999999999987543 22
Q ss_pred eEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 273 DIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 273 ~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
.+....|..... .......+|+|+|.+.+...... +.-..++++|+||+|.+.+.. .......+........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~---~~~~~~~~~~~l~~~~ 175 (203)
T cd00268 99 KVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG---FEDQIREILKLLPKDR 175 (203)
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC---hHHHHHHHHHhCCccc
Confidence 334444433221 11223678999999887664332 222468999999999985321 2333444444444456
Q ss_pred cEEEEeccCC
Q 001912 348 RIVLLSGTPS 357 (997)
Q Consensus 348 ~~llLTGTPi 357 (997)
..+++||||-
T Consensus 176 ~~~~~SAT~~ 185 (203)
T cd00268 176 QTLLFSATMP 185 (203)
T ss_pred EEEEEeccCC
Confidence 7899999986
No 122
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.30 E-value=8.2e-11 Score=141.85 Aligned_cols=345 Identities=18% Similarity=0.185 Sum_probs=188.3
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh------------CCcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS------------AGSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~------------~gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
|-+-|-.--.-++....+.+++.++|.|||-.|+.-+..-.. ..++.-|+|. +|+..|...|.+|+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 444444444445665678999999999999999876654332 2357889998 899999999999987
Q ss_pred CCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh----hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS----MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
.+.+. |.-..|.............|+++|.+...-.... -...-+.++|+||.|.+-.. .++..-..+.+..
T Consensus 390 ~~GI~-V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd---RGpvLESIVaRt~ 465 (1674)
T KOG0951|consen 390 PLGIT-VLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD---RGPVLESIVARTF 465 (1674)
T ss_pred ccCcE-EEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc---cchHHHHHHHHHH
Confidence 55322 2222232211111223568999998876322111 11234689999999999432 1222211222222
Q ss_pred hh------cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHH
Q 001912 344 AK------VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLL 417 (997)
Q Consensus 344 ~~------~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l 417 (997)
.. ..+.++||||- + +..|.-+.+..-.+++| .|...|........+.+-. ....... .+.+
T Consensus 466 r~ses~~e~~RlVGLSATL-P-Ny~DV~~Fl~v~~~glf-----~fd~syRpvPL~qq~Igi~-----ek~~~~~-~qam 532 (1674)
T KOG0951|consen 466 RRSESTEEGSRLVGLSATL-P-NYEDVASFLRVDPEGLF-----YFDSSYRPVPLKQQYIGIT-----EKKPLKR-FQAM 532 (1674)
T ss_pred HHhhhcccCceeeeecccC-C-chhhhHHHhccCccccc-----ccCcccCcCCccceEeccc-----cCCchHH-HHHH
Confidence 11 35679999994 2 34555554443334544 2333333222211111111 1111111 1122
Q ss_pred HhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhh
Q 001912 418 KQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQEL 497 (997)
Q Consensus 418 ~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 497 (997)
+. .++ +.|+.... |....|++--..+..+..+++.+...... ... .+....
T Consensus 533 Ne-~~y----eKVm~~ag-k~qVLVFVHsRkET~ktA~aIRd~~le~d----------------tls------~fmre~- 583 (1674)
T KOG0951|consen 533 NE-ACY----EKVLEHAG-KNQVLVFVHSRKETAKTARAIRDKALEED----------------TLS------RFMRED- 583 (1674)
T ss_pred HH-HHH----HHHHHhCC-CCcEEEEEEechHHHHHHHHHHHHHhhhh----------------HHH------HHHhcc-
Confidence 22 122 22333232 34556666655555554444432222110 000 000000
Q ss_pred hhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhc
Q 001912 498 GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577 (997)
Q Consensus 498 ~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~ 577 (997)
.+-.+.+...... ... --|.+.| .+.+..-|.+++..+|...-+-|.
T Consensus 584 -----s~s~eilrtea~~----------~kn---------------~dLkdLL---pygfaIHhAGl~R~dR~~~EdLf~ 630 (1674)
T KOG0951|consen 584 -----SASREILRTEAGQ----------AKN---------------PDLKDLL---PYGFAIHHAGLNRKDRELVEDLFA 630 (1674)
T ss_pred -----cchhhhhhhhhhc----------ccC---------------hhHHHHh---hccceeeccCCCcchHHHHHHHHh
Confidence 0000111000000 000 0123333 356677899999999999999998
Q ss_pred cCCCceEEEEeccccccccCcccccEEEE-----ecCC---C---CccHHhhHHHhhhhcC
Q 001912 578 LSNEVKIAIIGITAGGVGLDFSSAQNVVF-----LELP---Q---SPSLMLQAEDRAHRRG 627 (997)
Q Consensus 578 ~~~~~~VlLlSt~agg~GLNL~~A~~VI~-----~D~~---w---np~~~~Qa~gRa~RiG 627 (997)
++.++| ++||....-|+||+ |++||+ |||. | +|....|+.||++|.+
T Consensus 631 -~g~iqv-lvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 631 -DGHIQV-LVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred -cCceeE-EEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 889999 99999999999999 667776 5553 4 6889999999999987
No 123
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.26 E-value=4.8e-10 Score=132.44 Aligned_cols=144 Identities=21% Similarity=0.244 Sum_probs=98.0
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHH-HHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI-AIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqai-al~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.|-.||++||.. +.+|..+.+|.-+..|||+.|= |++......-+++.-.|- .|-.|=.++|+.-+.+ +.++
T Consensus 297 elD~FQk~Ai~~-lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vgLl 370 (1248)
T KOG0947|consen 297 ELDTFQKEAIYH-LERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VGLL 370 (1248)
T ss_pred CccHHHHHHHHH-HHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc-----ccee
Confidence 677899999955 5558899999999999999984 444444556678888887 6666677888876653 3344
Q ss_pred ccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
.|.-. +.....++|+|-+.|+...-. -.-.....||+||.|++.+...+ -.|..+.-.+.+--..|+||||
T Consensus 371 TGDvq----inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRG---vVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 371 TGDVQ----INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERG---VVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred eccee----eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccc---ccceeeeeeccccceEEEEecc
Confidence 44332 334677999999999875321 01135778999999999654322 2354444333233346999999
Q ss_pred C
Q 001912 356 P 356 (997)
Q Consensus 356 P 356 (997)
-
T Consensus 444 V 444 (1248)
T KOG0947|consen 444 V 444 (1248)
T ss_pred C
Confidence 4
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.25 E-value=7.4e-10 Score=137.36 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=101.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc---CCCceEEEEeccccccccCcccccEE
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL---SNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~---~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
..+.||+|.++.+..+..+.+.|+..+..+..+|+.+...+|.+.++...+ .++..| +++|++..+|+|+. .+.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~I-vVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFI-VVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeE-EEEeeEEEEEeccc-cCee
Confidence 568899999999999999999999988889999999999999998886552 344555 99999999999998 4444
Q ss_pred EEecCCCCccHHhhHHHhhhhcC--CCCeEEEEEEeeCCChHHHHHHHHHHhHHHH
Q 001912 605 VFLELPQSPSLMLQAEDRAHRRG--QTSAVNIYIFCAKDTTDESHWQNLNKSLRCV 658 (997)
Q Consensus 605 I~~D~~wnp~~~~Qa~gRa~RiG--Q~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i 658 (997)
+-|+. -...+.||.||++|-| ....+.||...-.+..+...++....+....
T Consensus 516 -ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 516 -ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred -eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 33432 2457899999999999 5567888888777777777776665554433
No 125
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=9.4e-10 Score=133.74 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=95.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccccc-----
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ----- 602 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~----- 602 (997)
..+..|||||++....+.|...|...|+++..|++ ...+|+..+..|. .+...| +++|..+|.|+|+.-..
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~A-G~~g~V-tIATNMAGRGtDIkl~~~V~~v 671 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEA-GQKGAV-TIATNMAGRGTDIKLGEGVREL 671 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhc-CCCCeE-EEeccCcCCCCCcCCccchhhh
Confidence 56899999999999999999999999999999998 4579999999998 666777 99999999999998322
Q ss_pred ---EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 603 ---NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 603 ---~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+||..+.+-+...+.|++||++|.|..-....|. |.|+.++..
T Consensus 672 GGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffv-----SleD~Lmr~ 717 (1025)
T PRK12900 672 GGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYV-----SLEDELMRL 717 (1025)
T ss_pred CCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEe-----chhHHHHHh
Confidence 4588899999999999999999999875443322 556665543
No 126
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.19 E-value=2.1e-09 Score=120.72 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=103.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
..++++||-+=...|++-|.++|...|+++.++|.....-+|.+++...+ -|...| |+....+-+|||++.++.|.++
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR-~G~~Dv-LVGINLLREGLDiPEVsLVAIl 521 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLR-LGEFDV-LVGINLLREGLDLPEVSLVAIL 521 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHh-cCCccE-EEeehhhhccCCCcceeEEEEe
Confidence 46899999999999999999999999999999999999999999999999 788889 8889999999999999999999
Q ss_pred cCC-----CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHH
Q 001912 608 ELP-----QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 608 D~~-----wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
|.+ -+-..++|.+|||.|--. -.|..|-=...+++++.|-+..+
T Consensus 522 DADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 522 DADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETER 570 (663)
T ss_pred ecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHH
Confidence 987 478899999999999322 23444443444556665554433
No 127
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.18 E-value=9.3e-10 Score=117.61 Aligned_cols=312 Identities=17% Similarity=0.202 Sum_probs=202.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.+.||-|+.+++..+. +..++|..++|-||++.--.-+. ...|-.|||||. ||+....-.++...-.....+
T Consensus 93 ekfrplq~~ain~~ma-~ed~~lil~tgggkslcyqlpal--~adg~alvi~plislmedqil~lkqlgi~as~ln---- 165 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA-GEDAFLILPTGGGKSLCYQLPAL--CADGFALVICPLISLMEDQILQLKQLGIDASMLN---- 165 (695)
T ss_pred HhcChhHHHHhhhhhc-cCceEEEEeCCCccchhhhhhHH--hcCCceEeechhHHHHHHHHHHHHHhCcchhhcc----
Confidence 3689999999987665 56789999999999986543332 357889999999 888877766766432211111
Q ss_pred ccCCCCc--------ccccCCCeEEEEehhHHHHH-------HHhhhhccccEEEeccccccccCCCC--CcHHHHHHHH
Q 001912 278 FGHRNNP--------VHLTRFPRVVVISYTMLHRL-------RKSMIEQDWALLIVDESHHVRCSKRT--SEPEEVKAVL 340 (997)
Q Consensus 278 ~g~~~~~--------~~~~~~~~VvItTy~~l~~~-------~~~l~~~~~~~VIvDEaH~iKN~~~~--~~s~~~~al~ 340 (997)
...++.. ..-......+-+|++.+.+. ...+....|.++-+||.|.....+.. ++......+.
T Consensus 166 ansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk 245 (695)
T KOG0353|consen 166 ANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK 245 (695)
T ss_pred CcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH
Confidence 1111100 01112456778888877653 33455567899999999987543321 2222222222
Q ss_pred HHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhH
Q 001912 341 DVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQT 420 (997)
Q Consensus 341 ~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~ 420 (997)
+.. +....++||||...+-+.|.-.++..- ..+.|..-|
T Consensus 246 rqf-~~~~iigltatatn~vl~d~k~il~ie-------~~~tf~a~f--------------------------------- 284 (695)
T KOG0353|consen 246 RQF-KGAPIIGLTATATNHVLDDAKDILCIE-------AAFTFRAGF--------------------------------- 284 (695)
T ss_pred HhC-CCCceeeeehhhhcchhhHHHHHHhHH-------hhheeeccc---------------------------------
Confidence 222 334579999998877666665554321 001111111
Q ss_pred HHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhh
Q 001912 421 VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIA 500 (997)
Q Consensus 421 ~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 500 (997)
.-|.....++.-+=+.++ .+
T Consensus 285 ------------nr~nl~yev~qkp~n~dd------~~------------------------------------------ 304 (695)
T KOG0353|consen 285 ------------NRPNLKYEVRQKPGNEDD------CI------------------------------------------ 304 (695)
T ss_pred ------------CCCCceeEeeeCCCChHH------HH------------------------------------------
Confidence 111111111111100000 00
Q ss_pred hhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCC
Q 001912 501 KLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSN 580 (997)
Q Consensus 501 K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~ 580 (997)
+.+...+.. .-.|+.-||||-...-.+.+...|...||....+|..+.+++|..+-..+- .+
T Consensus 305 --edi~k~i~~---------------~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~-a~ 366 (695)
T KOG0353|consen 305 --EDIAKLIKG---------------DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI-AG 366 (695)
T ss_pred --HHHHHHhcc---------------ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc-cc
Confidence 001111111 123667899999989999999999999999999999999999998888887 78
Q ss_pred CceEEEEeccccccccCcccccEEEEecCCCCccHHhh------------------------------------------
Q 001912 581 EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ------------------------------------------ 618 (997)
Q Consensus 581 ~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Q------------------------------------------ 618 (997)
++.| ++.|-|.|.||+-+....||+-.+|.+-..|-|
T Consensus 367 eiqv-ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfse 445 (695)
T KOG0353|consen 367 EIQV-IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSE 445 (695)
T ss_pred ceEE-EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecc
Confidence 8999 778889999999999999999999999999999
Q ss_pred -HHHhhhhcCCCCeEEEEEE
Q 001912 619 -AEDRAHRRGQTSAVNIYIF 637 (997)
Q Consensus 619 -a~gRa~RiGQ~k~V~Vy~L 637 (997)
--||++|.|++-++..||=
T Consensus 446 kesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 446 KESGRAGRDDMKADCILYYG 465 (695)
T ss_pred hhccccccCCCcccEEEEec
Confidence 4578888888887766663
No 128
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=126.44 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=197.7
Q ss_pred hhhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-C----CcEEEEeCc-chHHHHHHHHHHHCCCC
Q 001912 196 SLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-A----GSILVVCPA-ILRLSWAEELERWLPFC 269 (997)
Q Consensus 196 ~l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~----gp~LIV~P~-sL~~qW~~Ei~k~~p~~ 269 (997)
....+..|-|+..+.-.+. +..++-..=+|+|||..-+.-|.+.+. . -+.||+.|+ -|..|-.+-++.+..+.
T Consensus 39 kg~~~ptpiqRKTipliLe-~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 39 KGFNTPTPIQRKTIPLILE-GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred hhcCCCCchhcccccceee-ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 3445678888888877776 233333345999999887665444332 2 278999999 67777555555543322
Q ss_pred CCceEEEEccCC--CCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 270 LPADIHLVFGHR--NNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 270 ~~~~i~~~~g~~--~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.-.....+.|.+ +....+...+||||+|...+...... +.-....+||+||+.+|--.+ -..+...+..-...
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg---fqeql~e~l~rl~~ 194 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG---FQEQLHEILSRLPE 194 (529)
T ss_pred chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh---hHHHHHHHHHhCCC
Confidence 111111222222 22333455789999999987653222 333567899999999985211 11223333333334
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
....+++|||-- ..+ .+|.+.-.. .|..+|
T Consensus 195 ~~QTllfSatlp----------------~~l----v~fakaGl~-----------------------------~p~lVR- 224 (529)
T KOG0337|consen 195 SRQTLLFSATLP----------------RDL----VDFAKAGLV-----------------------------PPVLVR- 224 (529)
T ss_pred cceEEEEeccCc----------------hhh----HHHHHccCC-----------------------------CCceEE-
Confidence 557899999942 111 123211100 111111
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
-+|...+.+.. ++.++...+++ |..++
T Consensus 225 --ldvetkise~l-k~~f~~~~~a~--------------------------------------------------K~aaL 251 (529)
T KOG0337|consen 225 --LDVETKISELL-KVRFFRVRKAE--------------------------------------------------KEAAL 251 (529)
T ss_pred --eehhhhcchhh-hhheeeeccHH--------------------------------------------------HHHHH
Confidence 00000000000 00000000111 11111
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEE
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIA 585 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~Vl 585 (997)
...+.. ....+..+||+.....++.+...|...|+....|.|+++...|..-+.+|+ .+...+
T Consensus 252 l~il~~---------------~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~-~~k~~~- 314 (529)
T KOG0337|consen 252 LSILGG---------------RIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR-GRKTSI- 314 (529)
T ss_pred HHHHhc---------------cccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc-CCccce-
Confidence 111111 012457999999999999999999999999999999999999999999998 555556
Q ss_pred EEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC
Q 001912 586 IIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642 (997)
Q Consensus 586 LlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT 642 (997)
|++|+.+..|++++-.+.||.||.|-.+..+..|.||+.|.|.+ -..|-+|+...
T Consensus 315 lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 315 LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred EEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 89999999999999999999999999999999999999999865 34566666643
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=2.3e-09 Score=127.04 Aligned_cols=116 Identities=13% Similarity=0.194 Sum_probs=90.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc-------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS------- 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~------- 599 (997)
...|..|||.+.+....+.|...|.+.|+++..++..... +-..+|.+- |...-+-++|..+|.|.|+.
T Consensus 424 ~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~-~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~ 499 (764)
T PRK12326 424 HETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA-EEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEA 499 (764)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH-hHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCccc
Confidence 4679999999999999999999999999999999987543 224445443 33333388999999999875
Q ss_pred --------cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHH
Q 001912 600 --------SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651 (997)
Q Consensus 600 --------~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l 651 (997)
+.=+||-.+.+-|-..+.|..||++|.|..-....|. |+|+.++.+.
T Consensus 500 ~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 500 DRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred chHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 3457999999999999999999999999886655553 5666666444
No 130
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.11 E-value=5e-09 Score=128.95 Aligned_cols=149 Identities=20% Similarity=0.187 Sum_probs=105.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHH-HHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAI-AACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial-~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
-.|-|+|++++ ..+.+|.+++++..+|+|||+.+-.. +..+....++....|. +|..|=.++|..-+... ...+.+
T Consensus 118 F~LD~fQ~~a~-~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL 195 (1041)
T COG4581 118 FELDPFQQEAI-AILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGL 195 (1041)
T ss_pred CCcCHHHHHHH-HHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccc
Confidence 48899999999 56666889999999999999999754 4455566679999998 88888888877655432 222344
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEec
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTG 354 (997)
+.|.- ..+.+..|+|+|-+.|++..-. ........||+||.|+|.... ..-.+..+.-+....-+.++|||
T Consensus 196 ~TGDv----~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~e---RG~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 196 MTGDV----SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRE---RGVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred eecce----eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccc---cchhHHHHHHhcCCCCcEEEEeC
Confidence 44422 2344677888888998874321 222567889999999997543 33456666666555557899999
Q ss_pred cC
Q 001912 355 TP 356 (997)
Q Consensus 355 TP 356 (997)
|-
T Consensus 269 Tv 270 (1041)
T COG4581 269 TV 270 (1041)
T ss_pred CC
Confidence 94
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=1.1e-08 Score=124.35 Aligned_cols=114 Identities=13% Similarity=0.243 Sum_probs=87.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH-HHHHHhccCCCceEEEEeccccccccCcc------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ-SAVHSFQLSNEVKIAIIGITAGGVGLDFS------ 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~-~~i~~F~~~~~~~VlLlSt~agg~GLNL~------ 599 (997)
...|..|||-|.+...-+.|...|...|+++..++.... +++ .+|.. .|...-+.++|..+|.|.|+.
T Consensus 565 ~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~ 639 (970)
T PRK12899 565 HRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAV 639 (970)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHH
Confidence 457889999999999999999999999999999988743 333 44433 333223388999999998873
Q ss_pred --cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 600 --SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 600 --~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+.=+||..+.+-|...+.|..||++|.|..-....|. |+|+.++.+
T Consensus 640 ~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 640 AVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred hcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 3457999999999999999999999999876554443 455555543
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=5.2e-09 Score=127.03 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=83.5
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc-------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS------- 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~------- 599 (997)
...|..|||-+.+....+.|..+|...|+++-.++.... ++-..+|.+ .|...-+-++|..+|.|.|+.
T Consensus 446 ~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~ 521 (913)
T PRK13103 446 MALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEV 521 (913)
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHH
Confidence 467999999999999999999999999999988877643 222344443 333333388999999999974
Q ss_pred ------------------------------cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEE
Q 001912 600 ------------------------------SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 600 ------------------------------~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
+.=+||--+..-|-..+.|..||++|.|..-....|.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 588 (913)
T PRK13103 522 EVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL 588 (913)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 3457999999999999999999999999876555443
No 133
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=2.7e-09 Score=123.27 Aligned_cols=141 Identities=25% Similarity=0.316 Sum_probs=99.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHH-HHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA-IAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqa-ial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
+|-|||..+| ..+.++..+++..-+..|||+.| -|++..+++..+++.-.|- +|-.|=.+|+..=+. ++..+
T Consensus 129 ~LDpFQ~~aI-~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGLM 202 (1041)
T KOG0948|consen 129 TLDPFQSTAI-KCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK-----DVGLM 202 (1041)
T ss_pred ccCchHhhhh-hhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc-----cccee
Confidence 6788999888 45666888999999999999998 4778888888899999997 777777888776554 24444
Q ss_pred ccCCCCcccccCCCeEEEEehhHHHHHH----HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTMLHRLR----KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l~~~~----~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
.|.-. +......+|+|-+.|+... +.+ .....||+||.|+++....+ -.|..-.-++...-+-++||
T Consensus 203 TGDVT----InP~ASCLVMTTEILRsMLYRGSEvm--rEVaWVIFDEIHYMRDkERG---VVWEETIIllP~~vr~VFLS 273 (1041)
T KOG0948|consen 203 TGDVT----INPDASCLVMTTEILRSMLYRGSEVM--REVAWVIFDEIHYMRDKERG---VVWEETIILLPDNVRFVFLS 273 (1041)
T ss_pred eccee----eCCCCceeeeHHHHHHHHHhccchHh--heeeeEEeeeehhccccccc---eeeeeeEEeccccceEEEEe
Confidence 44322 2335668999999998742 223 34556999999999864332 22332222333445568999
Q ss_pred cc
Q 001912 354 GT 355 (997)
Q Consensus 354 GT 355 (997)
||
T Consensus 274 AT 275 (1041)
T KOG0948|consen 274 AT 275 (1041)
T ss_pred cc
Confidence 99
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.95 E-value=1e-07 Score=120.79 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=58.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccc--cE
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA--QN 603 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~----~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A--~~ 603 (997)
+.++|||+....+++.+.+.|.. .++. .+..+.. ..|.+++++|++ ++..| |+++....+|||+++- ..
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~-~~~~i-Llgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNN-GEKAI-LLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHh-CCCeE-EEEcceeecccccCCCceEE
Confidence 56899999999999999999975 2444 3333333 578999999984 55566 6778999999999874 45
Q ss_pred EEEecCCC
Q 001912 604 VVFLELPQ 611 (997)
Q Consensus 604 VI~~D~~w 611 (997)
||+.-+|+
T Consensus 749 viI~~LPf 756 (850)
T TIGR01407 749 LVIPRLPF 756 (850)
T ss_pred EEEeCCCC
Confidence 77777665
No 135
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-07 Score=110.37 Aligned_cols=101 Identities=27% Similarity=0.343 Sum_probs=76.5
Q ss_pred HHhccCCCceEEEEeccccccccCcccccEE--------EEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHH
Q 001912 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNV--------VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645 (997)
Q Consensus 574 ~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V--------I~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe 645 (997)
++|- +|+-.|.||| .|++.||.||+-.+| |-+++||+...-+|-.||.||-.|.+.-....||++---|-
T Consensus 851 qrFM-~GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 851 QRFM-DGEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred hhhc-cccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 5676 6777776666 577899999875443 66899999999999999999999998665556677665666
Q ss_pred HHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhc
Q 001912 646 SHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSY 679 (997)
Q Consensus 646 ~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~ 679 (997)
+.-..+.++++.+.+...|+..+ .+..+++.
T Consensus 929 RFAS~VAKRLESLGALThGDRRA---TetRDLSq 959 (1300)
T KOG1513|consen 929 RFASIVAKRLESLGALTHGDRRA---TETRDLSQ 959 (1300)
T ss_pred HHHHHHHHHHHhhcccccccccc---ccccchhh
Confidence 66678888899998888887433 33444444
No 136
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.85 E-value=1.5e-07 Score=101.50 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=104.6
Q ss_pred CCChhhh--ccChhhHHHHHHHHHhc---------CCCeEEEcCCCchHHHHHHHHHHHHhhCC---cEEEEeCcchHHH
Q 001912 192 KLPKSLL--DVILPFQLEGVRFGLRR---------GGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLS 257 (997)
Q Consensus 192 ~lp~~l~--~~L~pyQ~~gV~~~l~~---------~g~~ILaDemGLGKTlqaial~~~~~~~g---p~LIV~P~sL~~q 257 (997)
.+|..+. ..|-.-|+|+|-++.++ ..|.+|+|.+|.||-.|+.+++......| ++.|-+...|...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 4666543 47889999999997532 33689999999999999999887655443 2444455588888
Q ss_pred HHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHH-------hhhh------cc-ccEEEeccccc
Q 001912 258 WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK-------SMIE------QD-WALLIVDESHH 323 (997)
Q Consensus 258 W~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~-------~l~~------~~-~~~VIvDEaH~ 323 (997)
-.+.+..--.. ...++....-+.... ..-...|+++||..|..... .+.+ .. =.+||+||||.
T Consensus 107 a~RDl~DIG~~--~i~v~~l~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 107 AERDLRDIGAD--NIPVHPLNKFKYGDI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHHHHhCCC--cccceechhhccCcC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 77777754322 112222222111100 11245799999999876421 1111 12 25999999999
Q ss_pred cccCCCC--CcHHHHHHHHHHHhh--cCcEEEEeccCCC
Q 001912 324 VRCSKRT--SEPEEVKAVLDVAAK--VKRIVLLSGTPSL 358 (997)
Q Consensus 324 iKN~~~~--~~s~~~~al~~l~~~--~~~~llLTGTPi~ 358 (997)
.||...+ ..++...++..+..+ ..+++..|||...
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 9996542 235556666666443 2468999999973
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.84 E-value=4.3e-07 Score=109.40 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=92.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE-
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL- 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~- 276 (997)
.++-.|+--+..+++ |...=+..++|+|||--.++.+.++.. ..+++||+|+ .|+.|-.+-+.++........+.+
T Consensus 82 ~~ws~QR~WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~ 160 (1187)
T COG1110 82 RPWSAQRVWAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV 160 (1187)
T ss_pred CchHHHHHHHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 677889988877776 555556667999999887776666554 4579999999 788999999999975443223333
Q ss_pred EccCC--CC----cccc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccc
Q 001912 277 VFGHR--NN----PVHL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 277 ~~g~~--~~----~~~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
+++.- .. ...+ ..++||+|||-+.+.+..+.+.+.+||+|+||.+..+-
T Consensus 161 yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 161 YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHH
Confidence 33321 11 1112 23689999999999999999999999999999999863
No 138
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.83 E-value=1.3e-07 Score=113.18 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=94.7
Q ss_pred cChhhHHHHHHH-HHhcCCCeEEEcCCCchHHHHHHHHHH--HHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 200 VILPFQLEGVRF-GLRRGGRCLIADEMGLGKTLQAIAIAA--CFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 200 ~L~pyQ~~gV~~-~l~~~g~~ILaDemGLGKTlqaial~~--~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
++|++|.+...- -+..++++|.+.+++.|||+.|=.++. .+.....+|.+.|- +.+..=..++..+.-.+ ...+.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~-G~~ve 301 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDL-GFPVE 301 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcccc-CCcch
Confidence 677888777653 222577899999999999999854443 23335568888888 55555556666554322 11122
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHhhhh----ccccEEEeccccccccCCCCCcHHHHHHHHHHHhh----cC
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK----VK 347 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~----~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~----~~ 347 (997)
.+.|. -.+......-.|.|+|-+....+...+.. ...++|||||-|.+-....+ ...-..+.++... .-
T Consensus 302 ~y~g~-~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg--~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 302 EYAGR-FPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG--AILELLLAKILYENLETSV 378 (1008)
T ss_pred hhccc-CCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc--hHHHHHHHHHHHhccccce
Confidence 22222 22333334567999999998877665543 34689999999999653322 1111111122111 12
Q ss_pred cEEEEeccCCCCC
Q 001912 348 RIVLLSGTPSLSR 360 (997)
Q Consensus 348 ~~llLTGTPi~n~ 360 (997)
+++++|||--.|.
T Consensus 379 ~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 379 QIIGMSATIPNNS 391 (1008)
T ss_pred eEeeeecccCChH
Confidence 3699999965443
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.6e-07 Score=110.56 Aligned_cols=154 Identities=23% Similarity=0.175 Sum_probs=100.9
Q ss_pred ccChhhHHHHHHHHHhc---CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRR---GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~---~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|-+-|..++..+... ....+|.-.+|+|||=.-+-++...+..| -+||++|. +|..|..+.|+..++. .+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~-~v~v 275 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGA-KVAV 275 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCC-Chhh
Confidence 46788999999988765 24688999999999998888877777776 59999999 9999988888888762 2222
Q ss_pred EEEEccCCCCccc----ccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccc--ccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNPVH----LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~~~----~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~i--KN~~~~~~s~~~~al~~l~~~~~ 347 (997)
.|-.-+....... ......|||.|...+-.-. .+.++|||||=|-- |....-....+--++..-....-
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf-----~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPF-----KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhcCch-----hhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 2221111111111 1235689999988764322 46789999999973 32211112222233333222233
Q ss_pred cEEEEeccCCC
Q 001912 348 RIVLLSGTPSL 358 (997)
Q Consensus 348 ~~llLTGTPi~ 358 (997)
.+++-||||..
T Consensus 351 pvvLgSATPSL 361 (730)
T COG1198 351 PVVLGSATPSL 361 (730)
T ss_pred CEEEecCCCCH
Confidence 47899999963
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=3.8e-07 Score=109.95 Aligned_cols=115 Identities=15% Similarity=0.272 Sum_probs=89.1
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccccc----
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQ---- 602 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~---- 602 (997)
...|..|||.|.+....+.|...|...|+++..++.... +++..|-. + .|...-+.++|..+|.|.|+.-..
T Consensus 423 ~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~-AG~~GaVTIATNMAGRGTDI~Lg~~V~~ 498 (925)
T PRK12903 423 HKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-K-AGQKGAITIATNMAGRGTDIKLSKEVLE 498 (925)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-h-CCCCCeEEEecccccCCcCccCchhHHH
Confidence 357999999999999999999999999999999998743 44433322 2 443333388999999999986433
Q ss_pred ----EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 603 ----NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 603 ----~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+||..+.+-|-..+.|..||++|.|..-....|. |+|+.++.+
T Consensus 499 ~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 499 LGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred cCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 8999999999999999999999999876655543 455555543
No 141
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.80 E-value=2.9e-08 Score=120.82 Aligned_cols=117 Identities=18% Similarity=0.319 Sum_probs=99.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
..+.++|||+.....++.|.++|...|+++..+||.++..+|.++++.|+ .+++.| |+++..++.|++++.+++||++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr-~G~i~V-LV~t~~L~rGfDiP~v~lVvi~ 517 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR-LGEFDV-LVGINLLREGLDLPEVSLVAIL 517 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh-cCCceE-EEEcChhcCCeeeCCCcEEEEe
Confidence 56889999999999999999999999999999999999999999999998 677888 7899999999999999999999
Q ss_pred c-----CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC--hHHHHHH
Q 001912 608 E-----LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT--TDESHWQ 649 (997)
Q Consensus 608 D-----~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT--iEe~i~~ 649 (997)
| .+-+...+.|++||++|.. . -.|+.|+...| +.+.|.+
T Consensus 518 DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 518 DADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHH
Confidence 9 5668899999999999963 2 23455555444 3344443
No 142
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.73 E-value=7.8e-08 Score=117.83 Aligned_cols=109 Identities=17% Similarity=0.327 Sum_probs=95.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
..+.++|||+.....++.|.+.|...|+++..+||.++..+|..+++.|+ .+.+.| |+++..++.|++++.+++||++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~-~g~i~v-lV~t~~L~rGfdlp~v~lVii~ 521 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR-LGEFDV-LVGINLLREGLDIPEVSLVAIL 521 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH-cCCceE-EEEeCHHhCCccccCCcEEEEe
Confidence 46889999999999999999999999999999999999999999999998 677777 7899999999999999999999
Q ss_pred cC-----CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 608 EL-----PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 608 D~-----~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|. +-++..+.|++||++| +. .-.++.|+...
T Consensus 522 d~eifG~~~~~~~yiqr~GR~gR-~~--~G~~i~~~~~~ 557 (652)
T PRK05298 522 DADKEGFLRSERSLIQTIGRAAR-NV--NGKVILYADKI 557 (652)
T ss_pred CCcccccCCCHHHHHHHhccccC-CC--CCEEEEEecCC
Confidence 96 4688999999999999 32 23355555543
No 143
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.71 E-value=8.7e-08 Score=104.57 Aligned_cols=114 Identities=23% Similarity=0.404 Sum_probs=94.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC---CeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKG---IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVV 605 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~g---i~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI 605 (997)
..+|.||||....-.|-|++++..+| +..+.++|...+.+|.+.++.|. ..+++. |++|+++..||++++.-.+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk-k~dvkf-lictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK-KFDVKF-LICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh-hcCeEE-EEEehhhhccccccCCceEE
Confidence 46799999999999999999999874 57888999999999999999999 566666 99999999999999999999
Q ss_pred EecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 606 FLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 606 ~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
...+|-....|.+||||++|.-..- ...-|+ -|+-|++|
T Consensus 582 nvtlpd~k~nyvhrigrvgraermg--laislv--at~~ekvw 620 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAERMG--LAISLV--ATVPEKVW 620 (725)
T ss_pred EEecCcccchhhhhhhccchhhhcc--eeEEEe--eccchhee
Confidence 9999999999999999888743221 112223 35566666
No 144
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.65 E-value=8.7e-08 Score=92.12 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCchHHHHHHH-HH-HHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 216 GGRCLIADEMGLGKTLQAIA-IA-ACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaia-l~-~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
|..-+|-.-+|.|||...+- ++ ..+....++||+.|+-++ .+|+.+.+... .+.+....... ......-|
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvv---a~em~~aL~~~---~~~~~t~~~~~--~~~g~~~i 75 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVV---AEEMYEALKGL---PVRFHTNARMR--THFGSSII 75 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHTTTS---SEEEESTTSS------SSSSE
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHH---HHHHHHHHhcC---CcccCceeeec--cccCCCcc
Confidence 44457778899999998774 33 345567899999999443 23444444332 13322221111 11234568
Q ss_pred EEEehhHHHHHHH-hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc--CcEEEEeccCC
Q 001912 294 VVISYTMLHRLRK-SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV--KRIVLLSGTPS 357 (997)
Q Consensus 294 vItTy~~l~~~~~-~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~--~~~llLTGTPi 357 (997)
-+++|.++..... -....+|+++|+||||..- +.+-.....+.-.... ..++++||||-
T Consensus 76 ~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~D-----p~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 76 DVMCHATYGHFLLNPCRLKNYDVIIMDECHFTD-----PTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp EEEEHHHHHHHHHTSSCTTS-SEEEECTTT--S-----HHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cccccHHHHHHhcCcccccCccEEEEeccccCC-----HHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 8999999877432 2334689999999999852 2222222222222223 26899999994
No 145
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.61 E-value=5.1e-06 Score=102.20 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhccCCCc-eEEEEeccccccccCcccccE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEV-KIAIIGITAGGVGLDFSSAQN 603 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~----~gi~~~~idG~~s~~eR~~~i~~F~~~~~~-~VlLlSt~agg~GLNL~~A~~ 603 (997)
...-+|||-.-....+...+.|.+ ..+.+.=++|.++.++..+ -|+..+.. +=+++||..+.++|++.+..+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 355699999998888888888887 3466777899999998877 56644443 423999999999999999888
Q ss_pred EE--------EecCC----------CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 604 VV--------FLELP----------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 604 VI--------~~D~~----------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
|| .||+- =+-+.-.||-|||+| +.+-..|+|++++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 86 33332 234455666666655 5566789999886554
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.61 E-value=2.8e-06 Score=102.11 Aligned_cols=321 Identities=19% Similarity=0.230 Sum_probs=170.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
.++=.+||+|||-..+-.+.... ...++|+|.-. ++..+-...+.+..-. .-+.+... .+... ..+.++-++
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~---gFv~Y~d~-~~~~i-~~~~~~rLi 126 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLS---GFVNYLDS-DDYII-DGRPYDRLI 126 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCC---cceeeecc-ccccc-cccccCeEE
Confidence 46777899999998887777663 45678888766 8888877777653210 11222211 11111 112457899
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccccCCC----CCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhh
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR----TSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~----~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l 371 (997)
+..+++.+....+. .+||+|||||+-.+-+.-. +.....+..+..+..+++++|++-||-- ..+..++..+
T Consensus 127 vqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln----~~tvdFl~~~ 201 (824)
T PF02399_consen 127 VQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN----DQTVDFLASC 201 (824)
T ss_pred EEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC----HHHHHHHHHh
Confidence 99999988655432 4599999999865433111 1112334556677778999999999842 1223334444
Q ss_pred ccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHH
Q 001912 372 WPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEI 451 (997)
Q Consensus 372 ~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~ 451 (997)
+|+.--. -....|..+. ++. ++.++++++..+++.
T Consensus 202 Rp~~~i~---vI~n~y~~~~------------fs~-----------R~~~~~~~l~~~~l~------------------- 236 (824)
T PF02399_consen 202 RPDENIH---VIVNTYASPG------------FSN-----------RRCTFLRSLGTDTLA------------------- 236 (824)
T ss_pred CCCCcEE---EEEeeeecCC------------ccc-----------ceEEEecccCcHHHH-------------------
Confidence 4432000 0000010000 000 011222222222111
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCC
Q 001912 452 VSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSN 531 (997)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 531 (997)
..++................ ..... .... ..... +...+.. .-..|+
T Consensus 237 -------~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~-----~~~~t-F~~~L~~--------------~L~~gk 283 (824)
T PF02399_consen 237 -------AALNPEDENADTSPTPKHSP----DPTAT--AAIS-----NDETT-FFSELLA--------------RLNAGK 283 (824)
T ss_pred -------HHhCCcccccccCCCcCCCC----ccccc--cccc-----cchhh-HHHHHHH--------------HHhCCC
Confidence 01110000000000000000 00000 0000 00000 1111110 114689
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc--ccEEEEe--
Q 001912 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS--AQNVVFL-- 607 (997)
Q Consensus 532 KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~--A~~VI~~-- 607 (997)
++-|||....+.+++++++...+.++..++|..+..+ ++. -++.+| ++=|.+.++|+++-. -|-|+.|
T Consensus 284 nIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~---W~~~~V-viYT~~itvG~Sf~~~HF~~~f~yvk 355 (824)
T PF02399_consen 284 NICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VES---WKKYDV-VIYTPVITVGLSFEEKHFDSMFAYVK 355 (824)
T ss_pred cEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccc---ccceeE-EEEeceEEEEeccchhhceEEEEEec
Confidence 9999999999999999999999999999988776552 232 446888 666667889999864 3445444
Q ss_pred cCCCCccH--HhhHHHhhhhcCCCCeEEEEE
Q 001912 608 ELPQSPSL--MLQAEDRAHRRGQTSAVNIYI 636 (997)
Q Consensus 608 D~~wnp~~--~~Qa~gRa~RiGQ~k~V~Vy~ 636 (997)
.....|.. ..|.+||+-.++. +++.||.
T Consensus 356 ~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 356 PMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred CCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 33344554 6999999988775 4566654
No 147
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.59 E-value=1.3e-06 Score=110.90 Aligned_cols=134 Identities=18% Similarity=0.226 Sum_probs=88.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCc-cccc-CC
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNP-VHLT-RF 290 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~-~~~~-~~ 290 (997)
.++++.|=.|+|||++++-++..+... ..++|||=. -|-.|-.++|..+........ -....... ..+. ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhcCC
Confidence 468999999999999999888776553 236677765 888999999999865432111 11111111 1112 13
Q ss_pred CeEEEEehhHHHHHHHh----hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCC
Q 001912 291 PRVVVISYTMLHRLRKS----MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360 (997)
Q Consensus 291 ~~VvItTy~~l~~~~~~----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~ 360 (997)
..|||||-+.|...... ....+.-+||+||||+-- .+...+.+.....+ -.-+++||||+...
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ------~G~~~~~~~~~~~~-a~~~gFTGTPi~~~ 417 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ------YGELAKLLKKALKK-AIFIGFTGTPIFKE 417 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc------ccHHHHHHHHHhcc-ceEEEeeCCccccc
Confidence 58999999999876533 234567799999999852 23334444444433 44699999999554
No 148
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.52 E-value=6.1e-06 Score=98.79 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEc
Q 001912 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVF 278 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~ 278 (997)
.+|++-. ..+.++..++|..++-.|||...--.+...++ .+-++.|+|+ +|+.|=..++..-+..-.........
T Consensus 514 ~WQ~elL-DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~ 592 (1330)
T KOG0949|consen 514 EWQRELL-DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLL 592 (1330)
T ss_pred HHHHHHh-hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhH
Confidence 4666665 45667888999999999999998766554433 4568999999 89888777765543211111111111
Q ss_pred cCCCCcccc-cCCCeEEEEehhHHHHHHHh-----hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEE
Q 001912 279 GHRNNPVHL-TRFPRVVVISYTMLHRLRKS-----MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352 (997)
Q Consensus 279 g~~~~~~~~-~~~~~VvItTy~~l~~~~~~-----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llL 352 (997)
|.-..-..+ .-..+|.||-.+-+....-. -.-.+..+||+||.|.+.|.. ++..+..+..+. .++ .++|
T Consensus 593 g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~e---d~l~~Eqll~li-~CP-~L~L 667 (1330)
T KOG0949|consen 593 GDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEE---DGLLWEQLLLLI-PCP-FLVL 667 (1330)
T ss_pred hhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccc---cchHHHHHHHhc-CCC-eeEE
Confidence 110000011 11468999999988764322 011367899999999997643 344455555554 455 5999
Q ss_pred eccCCCCChhHHHHHHHhhcc-CCccchhHHHHHHhhccc
Q 001912 353 SGTPSLSRPYDIFHQINMLWP-GLLGKAKYDFAKTYCDVK 391 (997)
Q Consensus 353 TGTPi~n~~~El~~ll~~l~p-~~~~~~~~~F~~~~~~~~ 391 (997)
||| .+++..++..++-... .-..-....|.++|+...
T Consensus 668 SAT--igN~~l~qkWlnq~~R~~sr~~eli~~~erySel~ 705 (1330)
T KOG0949|consen 668 SAT--IGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELG 705 (1330)
T ss_pred ecc--cCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhc
Confidence 999 4666666665552211 111111235667776554
No 149
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.50 E-value=2.1e-07 Score=100.19 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=82.3
Q ss_pred HHHHHhccCCCceEEEEeccccccccCcccc----c----EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC
Q 001912 571 SAVHSFQLSNEVKIAIIGITAGGVGLDFSSA----Q----NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642 (997)
Q Consensus 571 ~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A----~----~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT 642 (997)
...+.|+ +|+..|+|+| .|||+||+|++- | .-|.+++||+.....|.+||+||-||.....+..+++.-.
T Consensus 52 ~e~~~F~-~g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFM-DGEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHh-CCCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 4567999 7788887775 999999999852 1 2478999999999999999999999998765555666667
Q ss_pred hHHHHHHHHHHhHHHHHhhhCCChhhhhh
Q 001912 643 TDESHWQNLNKSLRCVSSATNGKYDALQE 671 (997)
Q Consensus 643 iEe~i~~~l~~K~~~i~~~l~g~~~~~~~ 671 (997)
.|.+....+.+|++.+.+.+.|..+....
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~~~~ 158 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRAGGA 158 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCccccccc
Confidence 78889999999999999999998776443
No 150
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.48 E-value=1.7e-06 Score=88.83 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=95.3
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CC--cEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AG--SILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~g--p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
.-.-|.+.+-.++- |-.++...-.|+|||..-.......++ .| .+||+|.+ .|..|...|..+|........+.
T Consensus 65 psevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred chHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEE
Confidence 34567777766654 556677778999999765443333333 22 37999998 89999999988875544445566
Q ss_pred EEccCC---CCcccccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHH---HHHHHhhcC
Q 001912 276 LVFGHR---NNPVHLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKA---VLDVAAKVK 347 (997)
Q Consensus 276 ~~~g~~---~~~~~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a---l~~l~~~~~ 347 (997)
++.|+- .+.+.+...++|||.|.+.+..+.. .+.-.+....|+|||..+-. .-...+. +.+...+.+
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle-----~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE-----QLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH-----HHHHHHHHHHHhhcCcccc
Confidence 665543 2333344578999999998876543 24446778999999997641 1122233 333333445
Q ss_pred cEEEEecc
Q 001912 348 RIVLLSGT 355 (997)
Q Consensus 348 ~~llLTGT 355 (997)
.++.+|+|
T Consensus 219 Qvmmfsat 226 (387)
T KOG0329|consen 219 QVMMFSAT 226 (387)
T ss_pred eeeeeeee
Confidence 56666666
No 151
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.47 E-value=9.5e-06 Score=98.80 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=86.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-hhCCcEEEEeCc-chHH---HHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILVVCPA-ILRL---SWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~~~gp~LIV~P~-sL~~---qW~~Ei~k~~p~~~~~~ 273 (997)
-..|+-|+-|.--+ ..| -|.-..||-|||++|...+... +....+-||+++ .|.. +|...+.+|++- .
T Consensus 75 ~r~ydvQlig~l~L-~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL----s 147 (870)
T CHL00122 75 LRHFDVQLIGGLVL-NDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL----T 147 (870)
T ss_pred CCCCchHhhhhHhh-cCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCC----c
Confidence 35778898887433 334 4888899999999887655432 345578888988 4443 499999999863 2
Q ss_pred EEEEccCCCCcc-cccCCCeEEEEehhHHHH-----H----HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 274 IHLVFGHRNNPV-HLTRFPRVVVISYTMLHR-----L----RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 274 i~~~~g~~~~~~-~~~~~~~VvItTy~~l~~-----~----~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
+.+..+...... ...-..+|+-+|-..+.- . .......++.++||||+..+- .
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL-----------------I 210 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL-----------------I 210 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe-----------------e
Confidence 333322221111 111134677666654431 1 122334679999999999763 1
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll~ 369 (997)
..++.-+++||-+-. ..++|...+
T Consensus 211 DeArTPLiISg~~~~--~~~~y~~~~ 234 (870)
T CHL00122 211 DEARTPLIISGQSKT--NIDKYIVAD 234 (870)
T ss_pred ccCCCceeccCCCcc--chHHHHHHH
Confidence 223334788875432 245555544
No 152
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.45 E-value=1.3e-05 Score=93.57 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=80.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CC----eEEEEeCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCccc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEK----GI----GFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSS 600 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~----gi----~~~~idG~~s~~eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~~ 600 (997)
..-+|||=.-.+..+...+.|.+. +. -+.-++|+++.++..++ |...+ ..+=+++||..+.+.|++.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 335899988888887777777653 11 13568999999987665 54333 34444999999999999998
Q ss_pred ccEEE--------EecCC-------CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 601 AQNVV--------FLELP-------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 601 A~~VI--------~~D~~-------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
.-+|| .|+|. --|..-.||.-|++|-|.+.+..+|||+++.-.|
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 87775 33331 1233556777777777888889999999987663
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.44 E-value=2.2e-05 Score=97.51 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCe-EEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc--ccEEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIG-FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS--AQNVV 605 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~-~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~--A~~VI 605 (997)
.++++|||...-.++..+.+.+...... .+...|..+ +..+++.|...++. .+++.+....+|+|+++ ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3458999999999999999999887653 455566643 44889999976665 66899999999999987 57888
Q ss_pred EecCCCC-c-----------------------------cHHhhHHHhhhhcCCCCeEEE
Q 001912 606 FLELPQS-P-----------------------------SLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 606 ~~D~~wn-p-----------------------------~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
+.-.|+- | ....|++||+.|--+.+.|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8877653 2 235789999999444444433
No 154
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.37 E-value=7.4e-05 Score=93.99 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc--ccEEE
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS--AQNVV 605 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~--A~~VI 605 (997)
..+.+++|+..+.++++.+.+.|....+.. ...|... .|.+++++|+. ++..| |+.+....+|+|+++ +..||
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~v-LlG~~sFwEGVD~p~~~~~~vi 719 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQI-LLGLGSFWEGVDFVQADRMIEV 719 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeE-EEecchhhCCCCCCCCCeEEEE
Confidence 346688888888889999888887665443 5556432 35678999985 44456 777799999999963 55677
Q ss_pred EecCCC
Q 001912 606 FLELPQ 611 (997)
Q Consensus 606 ~~D~~w 611 (997)
+.-+|+
T Consensus 720 I~kLPF 725 (820)
T PRK07246 720 ITRLPF 725 (820)
T ss_pred EecCCC
Confidence 777663
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.32 E-value=1.4e-05 Score=98.15 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=83.1
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH-HHHHHhccCCCceEEEEeccccccccCcc------
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQ-SAVHSFQLSNEVKIAIIGITAGGVGLDFS------ 599 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~-~~i~~F~~~~~~~VlLlSt~agg~GLNL~------ 599 (997)
...|+.|||-+.+.+.-+.|..+|...|+++-+++.... +++ ++|..-= ....| -++|..+|.|-|+.
T Consensus 625 ~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG--~~GaV-TIATNMAGRGTDIkLg~~V~ 699 (1112)
T PRK12901 625 SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAG--QPGTV-TIATNMAGRGTDIKLSPEVK 699 (1112)
T ss_pred HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcC--CCCcE-EEeccCcCCCcCcccchhhH
Confidence 467999999999999999999999999999988877653 333 3444322 12334 78899999999975
Q ss_pred --cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 600 --SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 600 --~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
+.=+||--+..-|...+.|..||++|.|..-....|
T Consensus 700 e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 700 AAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred HcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 556899999999999999999999999987654444
No 156
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.11 E-value=3e-05 Score=96.02 Aligned_cols=77 Identities=13% Similarity=-0.007 Sum_probs=49.2
Q ss_pred CCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH---hhcCcEEEEeccCCCC--Ch
Q 001912 289 RFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA---AKVKRIVLLSGTPSLS--RP 361 (997)
Q Consensus 289 ~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~---~~~~~~llLTGTPi~n--~~ 361 (997)
....|+++|...+..+.- .+.-..+..|||||||++... +. +.-+..+. .+..++.++|+.|-.. ..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-----~~-eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-----SQ-EAFILRLYRQKNKTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-----cc-HHHHHHHHHHhCCCcceEEecCCCcccccch
Confidence 456799999999887542 233457899999999999531 11 22233333 2456799999999752 33
Q ss_pred hHHHHHHHhh
Q 001912 362 YDIFHQINML 371 (997)
Q Consensus 362 ~El~~ll~~l 371 (997)
..+-..++-|
T Consensus 80 ~~l~~vmk~L 89 (814)
T TIGR00596 80 SPLETKMRNL 89 (814)
T ss_pred HHHHHHHHHh
Confidence 4444445544
No 157
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.10 E-value=0.00021 Score=88.16 Aligned_cols=112 Identities=10% Similarity=0.136 Sum_probs=80.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-------CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEK-------GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS 600 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~-------gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~ 600 (997)
....-+|||-.-..-+..+.+.|... ++-+.-+|++++..+.+.+...-- .+++=+|++|..+.++|++..
T Consensus 411 ~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp--~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 411 EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP--KGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC--CCcchhhhhhhhHhhcccccC
Confidence 34678999999998888888888642 245667899999988877644432 233434999999999999988
Q ss_pred ccEEE--------EecC----------CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 601 AQNVV--------FLEL----------PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 601 A~~VI--------~~D~----------~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
.-+|| .||+ |-+-+.-.||.|||+| ..+-.+|+|++..-.+
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 76665 4555 2355667888888866 5666789988876443
No 158
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=8.9e-05 Score=90.41 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=75.8
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-hhCCcEEEEeCc-chHH---HHHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILVVCPA-ILRL---SWAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~~~gp~LIV~P~-sL~~---qW~~Ei~k~~p~~~~~~i 274 (997)
..|+-|+-|.--+ ..|. |.-..||=|||++|...+... +....+-||+++ .|.. .|...+.+|+.- .+
T Consensus 85 r~ydVQliGgl~L-h~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL----tv 157 (939)
T PRK12902 85 RHFDVQLIGGMVL-HEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL----SV 157 (939)
T ss_pred CcchhHHHhhhhh-cCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC----eE
Confidence 5677888887444 3344 888899999999887554432 345568888888 4443 499999999863 23
Q ss_pred EEEccCCCCc-ccccCCCeEEEEehhHHH-----HHH----HhhhhccccEEEeccccccc
Q 001912 275 HLVFGHRNNP-VHLTRFPRVVVISYTMLH-----RLR----KSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 275 ~~~~g~~~~~-~~~~~~~~VvItTy~~l~-----~~~----~~l~~~~~~~VIvDEaH~iK 325 (997)
.++.+..... ....-..||+-+|-..|. ... ......++.++||||+..+-
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 3332221111 111224688888877663 221 12334689999999999873
No 159
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.95 E-value=0.00098 Score=77.63 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=76.9
Q ss_pred CeEEEEeCCHH----HHHHHHHHHHHc------CCeEEEEeCCCCHHHHHHHHHHhc-cCCCceEEEEeccccccccCcc
Q 001912 531 NKMIIFAHHLK----VLDGVQEFISEK------GIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKIAIIGITAGGVGLDFS 599 (997)
Q Consensus 531 ~KvLVFs~~~~----~ld~L~~~L~~~------gi~~~~idG~~s~~eR~~~i~~F~-~~~~~~VlLlSt~agg~GLNL~ 599 (997)
.-+|||-.-.+ +.++|.+.|... ++.+.-|...++.+-..++ |+ ..+.++=.|++|..+.+.|++.
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeec
Confidence 34666654332 455666665542 5667778888887766554 55 2455666699999999999999
Q ss_pred cccEEEEecC----CCC-----------ccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 600 SAQNVVFLEL----PQS-----------PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 600 ~A~~VI~~D~----~wn-----------p~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
+..+||=.-. .+| |..-.+|--|++|.|.+.+-+.||++++.+....|+
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 9888874321 122 333445555666666677888999999988777665
No 160
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.86 E-value=0.00078 Score=78.37 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cC-----CeEEEEeCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISE----KG-----IGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFS 599 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~----~g-----i~~~~idG~~s~~eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~ 599 (997)
..-+|||---.+......+.|.. .| +-+.=|+.+.+.+...++ |...+ +.+=+++.|..+.+.|++.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeec
Confidence 44588887776655554444433 23 234557899998877765 44333 3343388999999999999
Q ss_pred cccEEEEecCC--------------------CCccHHhhHHHhhhhcCCCCeEEEEEEeeC
Q 001912 600 SAQNVVFLELP--------------------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAK 640 (997)
Q Consensus 600 ~A~~VI~~D~~--------------------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~ 640 (997)
+..+|| ||- -+-+.-.||-|||+|.|.-+ .|||++.
T Consensus 550 gI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRLYt~ 605 (902)
T KOG0923|consen 550 GIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRLYTA 605 (902)
T ss_pred CeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEeech
Confidence 887776 342 23456788888888877665 6777763
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.83 E-value=0.00013 Score=90.62 Aligned_cols=68 Identities=12% Similarity=-0.004 Sum_probs=52.9
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcC-----CC---CeEEEEEEeeCCChHHHHHHH
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG-----QT---SAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiG-----Q~---k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
..-||.|-.|+.+|.+-+.+-.+.-+...-+...-.|-+||..|+- .. ..+ +-.+++..|-++-.-.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~L 576 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKL 576 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHH
Confidence 4446999999999999999999999998999999999999999973 22 245 55566777766544333
No 162
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.77 E-value=0.00015 Score=77.30 Aligned_cols=65 Identities=29% Similarity=0.288 Sum_probs=47.1
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH---------hhCCcEEEEeCc-chHHHHHHHHHH
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF---------ISAGSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~---------~~~gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
+|-+.|+++|..++..++=+++.-+.|+|||-+..+++..+ ...+++||++|+ ..+.+-.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 36789999999888754437889999999997777766665 235679999999 677777777776
No 163
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00086 Score=79.41 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=63.6
Q ss_pred HHhcCCCeEEEcCCCchHHHHHHHHHHHHh---h----CCcEEEEeCc--chHHH---HHHHHHHHCCCCCCceEEEEcc
Q 001912 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFI---S----AGSILVVCPA--ILRLS---WAEELERWLPFCLPADIHLVFG 279 (997)
Q Consensus 212 ~l~~~g~~ILaDemGLGKTlqaial~~~~~---~----~gp~LIV~P~--sL~~q---W~~Ei~k~~p~~~~~~i~~~~g 279 (997)
++..|.-+|++-|+|+|||-|.=-++...- + .|-+=|--|. ..+.- -..|+.. +...+.+.+...
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~---~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV---LGSEVSYQIRFD 343 (1172)
T ss_pred HhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc---CccceeEEEEec
Confidence 455677899999999999999866655421 1 2234455565 22222 2333333 122223333322
Q ss_pred CCCCcccccCCCeEEEEehhHHHHHH-HhhhhccccEEEeccccc
Q 001912 280 HRNNPVHLTRFPRVVVISYTMLHRLR-KSMIEQDWALLIVDESHH 323 (997)
Q Consensus 280 ~~~~~~~~~~~~~VvItTy~~l~~~~-~~l~~~~~~~VIvDEaH~ 323 (997)
+. ......|-++|-+.|.+.. ..|.-.++..||+||||.
T Consensus 344 ~t-----i~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 344 GT-----IGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred cc-----cCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 22 1235679999999988743 345568999999999996
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.67 E-value=0.00036 Score=77.30 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=47.3
Q ss_pred ChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHH-hh-CC-----cEEEEeCc-chHHHHHHHHHHH
Q 001912 201 ILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACF-IS-AG-----SILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 201 L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~-~~-~g-----p~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
.||.|++-+.. .+..|+.+|+-.++|+|||+..+..+..+ .. .. ++++++++ ++..|=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 48999996655 45567889999999999999998766432 22 22 68888888 6666666666654
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.67 E-value=0.00036 Score=77.30 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=47.3
Q ss_pred ChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHH-hh-CC-----cEEEEeCc-chHHHHHHHHHHH
Q 001912 201 ILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACF-IS-AG-----SILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 201 L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~-~~-~g-----p~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
.||.|++-+.. .+..|+.+|+-.++|+|||+..+..+..+ .. .. ++++++++ ++..|=..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 48999996655 45567889999999999999998766432 22 22 68888888 6666666666654
No 166
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.66 E-value=0.05 Score=68.29 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=34.0
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCC
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
..+++++|.+..+|+|+- .+.+| -|+. .-..++|+.||+.|-|+..
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~~~-~~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDWAI-ADPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCeee-eccC-cHHHHHHHhhcccccccCC
Confidence 445699999999999986 34333 3332 3457899999999999764
No 167
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=97.65 E-value=3.5e-05 Score=61.16 Aligned_cols=48 Identities=10% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHhhhccCCCceeecCCCCeeeEEecCChHHHHHHHhccCCceeecc
Q 001912 106 LGQWLSDVMPSHYTQNNSGGKACVYKLRDYNPVLTCLKNSAGIEVEGI 153 (997)
Q Consensus 106 l~~~l~~~~~~~~~q~~~~~~~~~f~l~dy~~l~~~Lk~l~~v~~e~i 153 (997)
..+.+..|+..++.+|++.++.|+|.++||..+++.++.++.|.++++
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L~~~~~~l~~V~l~pl 55 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYSTLMKKVRNLPQVQLEPL 55 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHHHHHHHHhcCCceEeeCC
Confidence 456677788889999999999999999999999999999999988864
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.61 E-value=0.00041 Score=83.78 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC---CCceEEEEeccccccccCc------
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS---NEVKIAIIGITAGGVGLDF------ 598 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~---~~~~VlLlSt~agg~GLNL------ 598 (997)
..|+-.++|+.|. .+..+.+.|...----+.+.|.. ..|..++++|+.. +.-.| |+.|.+..+|||+
T Consensus 469 ~~G~~lvLfTS~~-~~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~v-L~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 469 AQGGTLVLTTAFS-HISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPV-LIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred cCCCEEEEechHH-HHHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcE-EEeCCccccccccCCccCC
Confidence 4455555666554 55666666755311224456654 2567899999964 33445 8899999999999
Q ss_pred --c--cccEEEEecCCCCccHH
Q 001912 599 --S--SAQNVVFLELPQSPSLM 616 (997)
Q Consensus 599 --~--~A~~VI~~D~~wnp~~~ 616 (997)
+ ..+.||+.-+|+-|..-
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred CCCCCcccEEEEEeCCCCcCCh
Confidence 2 37889999999877433
No 169
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.51 E-value=0.00033 Score=80.00 Aligned_cols=100 Identities=23% Similarity=0.314 Sum_probs=81.0
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCe-EEEEeCCCCHHHHHHHHHHhccC-CCceEEEEeccccccccCcccccEE
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIG-FVRIDGNTLPRDRQSAVHSFQLS-NEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~-~~~idG~~s~~eR~~~i~~F~~~-~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
..+|+-|+-||... .=.+...+++.|.. ..+|.|+.+++.|.+-...||+. +++.| |+.++|.|.||||. ..+|
T Consensus 355 lk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRi 430 (700)
T KOG0953|consen 355 LKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRI 430 (700)
T ss_pred CCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEE
Confidence 36789999998643 33355666667665 99999999999999999999964 45777 88899999999996 6789
Q ss_pred EEecCC---------CCccHHhhHHHhhhhcCCCC
Q 001912 605 VFLELP---------QSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 605 I~~D~~---------wnp~~~~Qa~gRa~RiGQ~k 630 (997)
||+++- -...+..|--|||+|.|.+-
T Consensus 431 iF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 431 IFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 999875 45677899999999998764
No 170
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.0012 Score=82.55 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=51.7
Q ss_pred cChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CC---cEEEEeCc-chHHHHHHHHHH
Q 001912 200 VILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AG---SILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~g---p~LIV~P~-sL~~qW~~Ei~k 264 (997)
.+||.|++-... .+..++.+|+-.++|+|||+.+|+.+..+.. .+ ++++.+.+ +-+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 468999998876 4567888999999999999999876655543 22 46777777 888899999988
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0096 Score=72.93 Aligned_cols=115 Identities=13% Similarity=0.228 Sum_probs=83.5
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc-cc---
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS-AQ--- 602 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~-A~--- 602 (997)
...|.+|||-+.+.+.-+.+...|.+.|++..+++-.-. .|+.-+-.+. .....| -++|..+|.|-++.- .+
T Consensus 426 ~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~gaV-TiATNMAGRGTDIkLg~~~~~ 501 (822)
T COG0653 426 HEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPGAV-TIATNMAGRGTDIKLGGNPEF 501 (822)
T ss_pred HhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCCcc-ccccccccCCcccccCCCHHH
Confidence 467999999999999999999999999999988888764 4554444443 222334 778999999999853 33
Q ss_pred -------EEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 603 -------NVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 603 -------~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
+||=-+---+-..+.|-.||++|.|-. ....|++ |.|..++++
T Consensus 502 V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp-G~S~F~l----SleD~L~r~ 551 (822)
T COG0653 502 VMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP-GSSRFYL----SLEDDLMRR 551 (822)
T ss_pred HHHhCCcEEEecccchhhHHHHHhhcccccCCCc-chhhhhh----hhHHHHHHH
Confidence 466666666777788999999999943 2334444 455555444
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.26 E-value=0.0018 Score=67.51 Aligned_cols=126 Identities=24% Similarity=0.264 Sum_probs=71.4
Q ss_pred cChhhHHHHHHHHHhcCCC-eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcc-hHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGR-CLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAI-LRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~-~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~s-L~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
+|-+-|++++..++..+.+ ++|.-..|+|||.....+...+... .++++++|+. ....-.+... . ....
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~-----~---~a~T 72 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG-----I---EAQT 72 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT-----S----EEE
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC-----c---chhh
Confidence 3678999999999876554 5676889999999877776666554 4799999994 3333333211 0 0111
Q ss_pred Ecc---CCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 277 VFG---HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 277 ~~g---~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
+.. ...... ...... ....++||||||-++- ......+........-+++|.
T Consensus 73 i~~~l~~~~~~~-~~~~~~-----------------~~~~~vliVDEasmv~-------~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 73 IHSFLYRIPNGD-DEGRPE-----------------LPKKDVLIVDEASMVD-------SRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp HHHHTTEECCEE-CCSSCC------------------TSTSEEEESSGGG-B-------HHHHHHHHHHS-T-T-EEEEE
T ss_pred HHHHHhcCCccc-cccccc-----------------CCcccEEEEecccccC-------HHHHHHHHHHHHhcCCEEEEE
Confidence 100 000000 000000 2456799999999983 444666666655555689999
Q ss_pred ccCCC
Q 001912 354 GTPSL 358 (997)
Q Consensus 354 GTPi~ 358 (997)
|-|-|
T Consensus 128 GD~~Q 132 (196)
T PF13604_consen 128 GDPNQ 132 (196)
T ss_dssp E-TTS
T ss_pred CCcch
Confidence 99864
No 173
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.24 E-value=0.00062 Score=79.03 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=51.0
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc-chHHHHHHH
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA-ILRLSWAEE 261 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~-sL~~qW~~E 261 (997)
...|-+-|+.+|.++.....=.++--++|+|||.+..-++..+... .++||.+|+ ..+.|..+.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHH
Confidence 3467789999999998765556777899999999999888877664 479999999 566777664
No 174
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.18 E-value=0.0011 Score=63.94 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh------CCc-EEEEeCcch-HHHHHHHHHHHCCCCCCceEEEEccCCCCcccc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS------AGS-ILVVCPAIL-RLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~------~gp-~LIV~P~sL-~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~ 287 (997)
++-+++.-+.|+|||..+-.++..+.. ..+ +.|-+|... ...+..++..-+......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--------------- 68 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---------------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---------------
Confidence 445678889999999999988887654 233 455555544 455666655544321100
Q ss_pred cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCC
Q 001912 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357 (997)
Q Consensus 288 ~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi 357 (997)
-.+..+.+....+.+....-.+|||||+|++. .......+..+.....-.++|+|||-
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~------~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF------SDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH------THHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC------CHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 01112222333444544555799999999983 14556677777666667799999993
No 175
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.13 E-value=0.015 Score=65.92 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=46.8
Q ss_pred eEEEEeccccccccCcccccEEEEecCC------C-----------CccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHH
Q 001912 583 KIAIIGITAGGVGLDFSSAQNVVFLELP------Q-----------SPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDE 645 (997)
Q Consensus 583 ~VlLlSt~agg~GLNL~~A~~VI~~D~~------w-----------np~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe 645 (997)
+| ++||..+.+.+.+.+.-+|| ||- + .|..-.||.-|++|.|.+++-..|+|+++...+.
T Consensus 315 kv-Vvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 315 KV-VVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred eE-EEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 45 99999999999888765554 442 3 4556678999999999999999999999865543
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.09 E-value=0.00086 Score=69.77 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc---EEEEeCcchHHHHHHHHHHHCCCCCCceEEE--
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS---ILVVCPAILRLSWAEELERWLPFCLPADIHL-- 276 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp---~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~-- 276 (997)
-+.|...+..++ ....+++.-..|+|||+.|++.+..+...+. ++|+-|..-+.. =.-|+|.-....+..
T Consensus 6 ~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~----~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE----DLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS---------TTT
T ss_pred CHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc----ccccCCCCHHHHHHHHH
Confidence 468999998888 4667888889999999999999887776663 555556532211 112232211000000
Q ss_pred ------Ecc--CCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 277 ------VFG--HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 277 ------~~g--~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
... .......+.....|.+.+...++-. ..+..+|||||||++. ....+.+.... ....
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t-------~~~~k~ilTR~-g~~s 147 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLT-------PEELKMILTRI-GEGS 147 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG---------HHHHHHHHTTB--TT-
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCC-------HHHHHHHHccc-CCCc
Confidence 000 1111122222445667766655331 2356899999999983 33344443322 1245
Q ss_pred EEEEeccCCCCC
Q 001912 349 IVLLSGTPSLSR 360 (997)
Q Consensus 349 ~llLTGTPi~n~ 360 (997)
++.++|-|.|.+
T Consensus 148 kii~~GD~~Q~D 159 (205)
T PF02562_consen 148 KIIITGDPSQID 159 (205)
T ss_dssp EEEEEE------
T ss_pred EEEEecCceeec
Confidence 799999987654
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.07 E-value=0.0051 Score=64.69 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=86.0
Q ss_pred cChhhHHHHHHHHHhc--CCCeEEEcCCCchHHHHHHHHHHHHhhCCc--EEEEeCcchHHHHHHHHHHHCCCCCCceEE
Q 001912 200 VILPFQLEGVRFGLRR--GGRCLIADEMGLGKTLQAIAIAACFISAGS--ILVVCPAILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~--~g~~ILaDemGLGKTlqaial~~~~~~~gp--~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
.+||-|.+-+..|+.. |.+.++-.-||-|||-..+=++...+..|. +-+|||.+|+.|-..-+..-+..+....+.
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~i~ 102 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLLNRRIY 102 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHhCCeeE
Confidence 6899999999998863 567899999999999988876666666553 678999999999998888876654443444
Q ss_pred EEccCCCCcc-------------cccCCCeEEEEehhHHHHHH---------------Hhhhh-----ccccEEEecccc
Q 001912 276 LVFGHRNNPV-------------HLTRFPRVVVISYTMLHRLR---------------KSMIE-----QDWALLIVDESH 322 (997)
Q Consensus 276 ~~~g~~~~~~-------------~~~~~~~VvItTy~~l~~~~---------------~~l~~-----~~~~~VIvDEaH 322 (997)
.+.-.+.... .......|++++.+.+.... ..+.+ ..-..-|+||++
T Consensus 103 ~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsD 182 (229)
T PF12340_consen 103 HLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESD 182 (229)
T ss_pred EecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECch
Confidence 3332222111 11235679999999765420 00110 123457999999
Q ss_pred ccc
Q 001912 323 HVR 325 (997)
Q Consensus 323 ~iK 325 (997)
.+-
T Consensus 183 e~L 185 (229)
T PF12340_consen 183 EIL 185 (229)
T ss_pred hcc
Confidence 874
No 178
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.99 E-value=0.088 Score=61.01 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=81.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccCcccccEEEE
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLDFSSAQNVVF 606 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLNL~~A~~VI~ 606 (997)
....++|||...---.-.|..+|...++.++.++.-++..+-.++-..|. .|+..++|.|-++- =.=..+.++.+|||
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~-~G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF-HGRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH-cCCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 45678999987665566789999999999999999999999999999999 78899988886642 12345678999999
Q ss_pred ecCCCCccHHhhHHHhhhhcCC
Q 001912 607 LELPQSPSLMLQAEDRAHRRGQ 628 (997)
Q Consensus 607 ~D~~wnp~~~~Qa~gRa~RiGQ 628 (997)
|.||-+|.-|...+.-...-.+
T Consensus 377 Y~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 377 YGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred ECCCCChhHHHHHHhhhccccc
Confidence 9999999999988866554433
No 179
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.96 E-value=0.0051 Score=79.06 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc--ccEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGI--GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS--AQNV 604 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi--~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~--A~~V 604 (997)
.+.++|||.....+++.+.+.|..... .+..+.-+++...|.+++++|+. ++..| |+.+.+..+|+|+++ ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~i-LlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAI-LLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeE-EEecCcccCccccCCCceEEE
Confidence 455788888888899999888875422 13333333333458899999985 44446 667889999999987 4789
Q ss_pred EEecCCC-Ccc
Q 001912 605 VFLELPQ-SPS 614 (997)
Q Consensus 605 I~~D~~w-np~ 614 (997)
|+.-+|+ +|.
T Consensus 829 iI~kLPF~~p~ 839 (928)
T PRK08074 829 VIVRLPFAPPD 839 (928)
T ss_pred EEecCCCCCCC
Confidence 9999887 565
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.93 E-value=0.0018 Score=79.26 Aligned_cols=125 Identities=18% Similarity=0.091 Sum_probs=80.2
Q ss_pred CCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCccc-------ccCCCeEEE
Q 001912 225 MGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH-------LTRFPRVVV 295 (997)
Q Consensus 225 mGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~-------~~~~~~VvI 295 (997)
.|+|||-..+.++...+..| .+||++|. ++..|+...|...++.. .+.+++..-..... .....+|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~---~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAG---DVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCC---cEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 59999999998888777655 69999999 89999999999988732 24444443222211 122457999
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccc--ccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCC
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHV--RCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~i--KN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi 357 (997)
.|...+-.- -.+.++|||||=|.- |....-....+--++..-....-.+++-|+||.
T Consensus 246 GtRSAvFaP-----~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFAP-----VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEec-----cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999876322 247799999999973 322111112222222222222334688899996
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.85 E-value=0.0032 Score=73.45 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=55.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHH
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
+|-.-|..||...+.+.- .||--+.|+|||+++.++..++.. .+|+||++|+ ..++|-++.|.+-
T Consensus 410 kLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 678899999999998544 688999999999999999887654 6899999999 5778888888874
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.70 E-value=0.0047 Score=70.70 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=53.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHH--h-hCCcEEEEeCcchHHH-HHHHHHHHC-CCCCCceEEEEccCCCCcccccCCCeE
Q 001912 219 CLIADEMGLGKTLQAIAIAACF--I-SAGSILVVCPAILRLS-WAEELERWL-PFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~--~-~~gp~LIV~P~sL~~q-W~~Ei~k~~-p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
+|+--..|+|||+.|+.++..+ . .....+++|+...+.+ -...+.+-. +. ....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~---------------------~~~~ 62 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK---------------------LKKS 62 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccc---------------------hhhh
Confidence 4566679999999999999887 3 3456788888854444 444444422 00 1112
Q ss_pred EEEehhHHHHHHH--hhhhccccEEEecccccccc
Q 001912 294 VVISYTMLHRLRK--SMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 294 vItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN 326 (997)
.+.....+..... ......+|+|||||||++..
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 3333333333221 12236899999999999975
No 183
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0088 Score=62.09 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=57.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvIt 296 (997)
.++.-+||.|||..++.++..+...+ +++|+-|. ..... ...+...+ | ..+ ..+.+.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~l------------g-----~~~---~~~~~~ 63 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRI------------G-----LSR---EAIPVS 63 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCC------------C-----Ccc---cceEeC
Confidence 36677899999999999988776555 56777552 11100 00000000 0 000 011233
Q ss_pred ehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
+.+.+...... ...++++|||||+|.+. ......+...+......+++||-
T Consensus 64 ~~~~~~~~~~~-~~~~~dvviIDEaq~l~-------~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 64 SDTDIFELIEE-EGEKIDCVLIDEAQFLD-------KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ChHHHHHHHHh-hCCCCCEEEEEccccCC-------HHHHHHHHHHHHHcCCeEEEEec
Confidence 33333332222 34589999999999883 12233444443345556777774
No 184
>PRK10536 hypothetical protein; Provisional
Probab=96.51 E-value=0.0051 Score=65.95 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC--cEEEEeCcchHHHHHHHHHHHCCCCCCceEE---
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRLSWAEELERWLPFCLPADIH--- 275 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g--p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~--- 275 (997)
+-..|...+.++.. +.-+++--+.|+|||..|++++......+ ..+||+-+.+-. .|...|+|.-....+.
T Consensus 60 ~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~---ge~LGfLPG~~~eK~~p~~ 135 (262)
T PRK10536 60 RNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA---DEDLGFLPGDIAEKFAPYF 135 (262)
T ss_pred CCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc---hhhhCcCCCCHHHHHHHHH
Confidence 34678888876665 55677888999999999999988644323 234444333211 3344444432110000
Q ss_pred --------EEccCCCCcccc--cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 276 --------LVFGHRNNPVHL--TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 276 --------~~~g~~~~~~~~--~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
...+. .....+ .....|.|.+...++-. ...-++|||||||++. ....+.+..-. .
T Consensus 136 ~pi~D~L~~~~~~-~~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~-------~~~~k~~ltR~-g 201 (262)
T PRK10536 136 RPVYDVLVRRLGA-SFMQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVT-------AAQMKMFLTRL-G 201 (262)
T ss_pred HHHHHHHHHHhCh-HHHHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCC-------HHHHHHHHhhc-C
Confidence 00010 001111 11345666666554331 1245899999999983 34444444333 2
Q ss_pred cCcEEEEeccCCCCC
Q 001912 346 VKRIVLLSGTPSLSR 360 (997)
Q Consensus 346 ~~~~llLTGTPi~n~ 360 (997)
...+++++|-|-|.+
T Consensus 202 ~~sk~v~~GD~~QiD 216 (262)
T PRK10536 202 ENVTVIVNGDITQCD 216 (262)
T ss_pred CCCEEEEeCChhhcc
Confidence 455799999986544
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.41 E-value=0.016 Score=71.20 Aligned_cols=66 Identities=26% Similarity=0.257 Sum_probs=54.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc-chHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
..|-+.|+++|.+++...+..||--+.|+|||.+++.++..+... .++||++|+ ..+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 467899999999988765678889999999999999888776654 479999999 566677777765
No 186
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.14 E-value=0.017 Score=69.67 Aligned_cols=46 Identities=22% Similarity=0.019 Sum_probs=42.0
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcC
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRG 627 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiG 627 (997)
..-||.|--|+-+|.|=+..=++.-+-+.-|-..-.|-+||..|+-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 4567999999999999999988998999999999999999999985
No 187
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.13 E-value=0.021 Score=61.95 Aligned_cols=120 Identities=19% Similarity=0.133 Sum_probs=71.7
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCcc-hHH---HHHHHHHHHCCCCCCc
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAI-LRL---SWAEELERWLPFCLPA 272 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~s-L~~---qW~~Ei~k~~p~~~~~ 272 (997)
.-.+++-|+-|+-.+ ..|. |.-..+|=|||+++...+.... ...++=||+.+. |.. +|...+-+++.-
T Consensus 75 g~~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl---- 147 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL---- 147 (266)
T ss_dssp S----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT-----
T ss_pred CCcccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh----
Confidence 346788888888444 4344 8899999999999976665443 445688888884 443 388888888752
Q ss_pred eEEEEccCCCCcc-cccCCCeEEEEehhHHHHH--HHh-------hhhccccEEEecccccc
Q 001912 273 DIHLVFGHRNNPV-HLTRFPRVVVISYTMLHRL--RKS-------MIEQDWALLIVDESHHV 324 (997)
Q Consensus 273 ~i~~~~g~~~~~~-~~~~~~~VvItTy~~l~~~--~~~-------l~~~~~~~VIvDEaH~i 324 (997)
.+........... ...-..+|+-+|-..+..+ .+. ....+++++||||+..+
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 2333322221110 0011357888888877652 221 11357899999999875
No 188
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=96.05 E-value=0.025 Score=62.60 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=71.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH------------HHhc--cCCCceEEEEeccccc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAV------------HSFQ--LSNEVKIAIIGITAGG 593 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i------------~~F~--~~~~~~VlLlSt~agg 593 (997)
..+.+++|.++...++|+|+.+|..+++.|-+++|.....+....- .... ....+.|.|++++-..
T Consensus 115 ~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~ 194 (297)
T PF11496_consen 115 EYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLY 194 (297)
T ss_dssp TSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---
T ss_pred cCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCcccc
Confidence 4567999999999999999999999999999999987655544332 0111 1124677777776443
Q ss_pred c----ccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 594 V----GLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 594 ~----GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
. .++-...|.||-||+.+++....-..-|..-..+ +.+-|++|+..+|+|..+...
T Consensus 195 ~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~ 254 (297)
T PF11496_consen 195 NNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCF 254 (297)
T ss_dssp TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHH
T ss_pred ccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHc
Confidence 3 1333457899999999998764443334332222 789999999999999977644
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.99 E-value=0.013 Score=59.41 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcC----CeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecc--ccccccCccc--
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKG----IGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT--AGGVGLDFSS-- 600 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~g----i~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~--agg~GLNL~~-- 600 (997)
.+.++|||+.....++.+.+.+...+ +. +...+ ..++..+++.|.. ++..| |+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q~---~~~~~~~l~~~~~-~~~~i-l~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQG---SKSRDELLEEFKR-GEGAI-LLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEEST---CCHHHHHHHHHCC-SSSEE-EEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeecC---cchHHHHHHHHHh-ccCeE-EEEEecccEEEeecCCCch
Confidence 35789999999999999999998653 32 22333 3678899999995 44445 66666 8999999986
Q ss_pred ccEEEEecCCC
Q 001912 601 AQNVVFLELPQ 611 (997)
Q Consensus 601 A~~VI~~D~~w 611 (997)
+..||+.-+|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 77899998886
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.87 E-value=0.065 Score=66.99 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=79.0
Q ss_pred hhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC---cEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 197 l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g---p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
....|-+-|++++..+.. ++-.+|.-..|+|||..+-+++..+...+ ++++++|+........|.. .. ....
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---g~-~a~T 394 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---GL-TAST 394 (720)
T ss_pred cCCCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc---CC-cccc
Confidence 345789999999998875 45688999999999998888877666544 6888999966665544421 10 0000
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
+|-..+... .. . .....+ .....++||||||+++- ......+.... ...-+++|-
T Consensus 395 ih~lL~~~~-------~~--~------~~~~~~--~~~~~~llIvDEaSMvd-------~~~~~~Ll~~~-~~~~rlilv 449 (720)
T TIGR01448 395 IHRLLGYGP-------DT--F------RHNHLE--DPIDCDLLIVDESSMMD-------TWLALSLLAAL-PDHARLLLV 449 (720)
T ss_pred HHHHhhccC-------Cc--c------chhhhh--ccccCCEEEEeccccCC-------HHHHHHHHHhC-CCCCEEEEE
Confidence 110000000 00 0 000000 01467899999999983 23334444332 234579999
Q ss_pred ccCCCC
Q 001912 354 GTPSLS 359 (997)
Q Consensus 354 GTPi~n 359 (997)
|=|-|-
T Consensus 450 GD~~QL 455 (720)
T TIGR01448 450 GDTDQL 455 (720)
T ss_pred Cccccc
Confidence 987653
No 191
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.70 E-value=0.06 Score=67.16 Aligned_cols=79 Identities=15% Similarity=0.365 Sum_probs=56.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHhccC---CCceEEEEeccccccccCccc--ccE
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEK-GIGFVRIDGNTLPRDRQSAVHSFQLS---NEVKIAIIGITAGGVGLDFSS--AQN 603 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~-gi~~~~idG~~s~~eR~~~i~~F~~~---~~~~VlLlSt~agg~GLNL~~--A~~ 603 (997)
+..+|||.....+++.+.+.|... +.. +.+.|. ..|.++++.|.+. ++..| |+++....+|||+++ +..
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~V-L~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSV-LFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeE-EEEeccccccccCCCCceEE
Confidence 344788888888888888888753 333 445664 3577888878742 44456 666789999999986 788
Q ss_pred EEEecCCC-Cc
Q 001912 604 VVFLELPQ-SP 613 (997)
Q Consensus 604 VI~~D~~w-np 613 (997)
||+.-+|+ +|
T Consensus 609 vII~kLPF~~p 619 (697)
T PRK11747 609 VIITKIPFAVP 619 (697)
T ss_pred EEEEcCCCCCC
Confidence 99998886 45
No 192
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.39 E-value=0.04 Score=63.36 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=87.1
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH----cCC----eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISE----KGI----GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS 599 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~----~gi----~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~ 599 (997)
-.+-+.|-||..+.+.+.+-...+. -|- .+..+.|+-+.++|.++-...- .|+..- +++|.|...||++-
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F-~G~L~g-iIaTNALELGIDIG 600 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF-GGKLCG-IIATNALELGIDIG 600 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh-CCeeeE-EEecchhhhccccc
Confidence 3477999999999887765443332 121 2345678999999988876655 555555 89999999999999
Q ss_pred cccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 600 SAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 600 ~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
..|.|+++..|.+-+.+.|..|||+|.... ...|| .+..+.+|...+
T Consensus 601 ~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 601 HLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQYYM 647 (1034)
T ss_pred cceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhHhh
Confidence 999999999999999999999999995532 23333 345567777543
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.30 E-value=0.11 Score=63.23 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC------CcEEEEeCcchHH-HHHHHHH
Q 001912 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA------GSILVVCPAILRL-SWAEELE 263 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~------gp~LIV~P~sL~~-qW~~Ei~ 263 (997)
+.|+.+|..++.+ .-++|.-..|+|||.+...++..+... ..+++++|+.-.. ...+-+.
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHH
Confidence 7999999988884 557888999999999988777665432 3589999994433 3444333
No 194
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.29 E-value=0.12 Score=59.15 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=38.3
Q ss_pred cChhhHHHHH---HHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc----EEEEeCc
Q 001912 200 VILPFQLEGV---RFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPA 252 (997)
Q Consensus 200 ~L~pyQ~~gV---~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp----~LIV~P~ 252 (997)
..||-|.+=. +..+..+|.|||-.+.|+|||+.-++++..|....| -||-|..
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 4567665433 345666888999999999999999988776654443 4777765
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.99 E-value=0.041 Score=52.70 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAE 260 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~ 260 (997)
+..++|.-++|+|||..+..++..+...+ .++++.+......+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLD 47 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHH
Confidence 45678899999999999999988776655 6777777765555443
No 196
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.92 E-value=0.088 Score=64.19 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=41.8
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-----CcEEEEeCcchHH
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPAILRL 256 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-----gp~LIV~P~sL~~ 256 (997)
..+.|++++.-++. ++-++|.-..|+|||.+...++..+... ..+++++|+.-..
T Consensus 153 ~~d~Qk~Av~~a~~-~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 153 EVDWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CCHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHH
Confidence 35899999988887 4557888899999999988777665432 2588899995443
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.39 Score=55.33 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=75.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh-----CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCC
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS-----AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~-----~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~ 291 (997)
+.+++.-.+|.|||-++.-++..+.. ..++.+|+=..-..-=...+..|...+. +.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg---vpv--------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG---IPV--------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC---cce---------------
Confidence 45678889999999999888876652 2456666654311111111455543211 111
Q ss_pred eEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh----cCcEEEEeccCCCCChhHHHHH
Q 001912 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK----VKRIVLLSGTPSLSRPYDIFHQ 367 (997)
Q Consensus 292 ~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~----~~~~llLTGTPi~n~~~El~~l 367 (997)
.++-+++.+......+ .+.++||||++.+... +......+..+... ....+.|+||--.+.+.+++..
T Consensus 237 -~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~-----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 -KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPK-----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred -EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCcc-----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1233555555544443 5799999999998741 22223344444332 2456999999877777777766
Q ss_pred HHhhc
Q 001912 368 INMLW 372 (997)
Q Consensus 368 l~~l~ 372 (997)
...+.
T Consensus 309 ~~~~~ 313 (388)
T PRK12723 309 FSPFS 313 (388)
T ss_pred hcCCC
Confidence 65443
No 198
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.62 E-value=0.037 Score=69.31 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=74.2
Q ss_pred HHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHH-----HHHHHHHHHCCCCCCceEEEEccCCCCccc
Q 001912 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL-----SWAEELERWLPFCLPADIHLVFGHRNNPVH 286 (997)
Q Consensus 212 ~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~-----qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~ 286 (997)
++..+.+++++...|+|||+.|=.++..--..+.+.-|+|...+. .|...|..- ....+.-..|...-...
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~----~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL----LGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccc----cCceEEecCCccccchH
Confidence 455677899999999999999865544433456789999995443 355555543 22234444444333333
Q ss_pred ccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 287 LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 287 ~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
+....+|+|.|++.+.... .-...++.|+||.|.+..
T Consensus 1231 l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1231 LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcc
Confidence 4456799999999987763 336789999999999963
No 199
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.57 E-value=0.2 Score=49.23 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCC-------eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCccc--ccEEEEecCCC
Q 001912 542 VLDGVQEFISEKGI-------GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSS--AQNVVFLELPQ 611 (997)
Q Consensus 542 ~ld~L~~~L~~~gi-------~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~--A~~VI~~D~~w 611 (997)
.++.+.+.+...+. ..+.+.| .+..+...+++.|....+..| |+++....+|+|+++ +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 34555555555443 3444444 444567899999986543345 666666999999986 67888888775
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.55 E-value=0.27 Score=61.81 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=76.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..|-+-|+++|..++..++-++|....|+|||...-++...+... ..+++++|+....+=..+- .. .. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~---~g-~~---a--- 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE---SG-IE---S--- 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc---cC-Cc---e---
Confidence 368899999999888655567889999999999888877666554 4688889996544322210 00 00 0
Q ss_pred ccCCCCcccccCCCeEEEEehhHH-HHHHH-hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTML-HRLRK-SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l-~~~~~-~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
.|-..+ ..... .-.....++|||||+.++. ......++.......-+++|.|=
T Consensus 421 ------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~-------~~~~~~Ll~~~~~~~~kliLVGD 475 (744)
T TIGR02768 421 ------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVG-------SRQMARVLKEAEEAGAKVVLVGD 475 (744)
T ss_pred ------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCC-------HHHHHHHHHHHHhcCCEEEEECC
Confidence 000111 00000 0011467999999999983 33344555544445567999997
Q ss_pred CC
Q 001912 356 PS 357 (997)
Q Consensus 356 Pi 357 (997)
|-
T Consensus 476 ~~ 477 (744)
T TIGR02768 476 PE 477 (744)
T ss_pred hH
Confidence 54
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.54 E-value=0.56 Score=45.15 Aligned_cols=43 Identities=26% Similarity=0.176 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSW 258 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW 258 (997)
+..++|.-+.|.|||..+-.++..+.. ..+++++........+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL 62 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh
Confidence 456888999999999888888776543 3445555444443333
No 202
>PF13245 AAA_19: Part of AAA domain
Probab=94.37 E-value=0.15 Score=44.43 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-----CCcEEEEeCc-chHHHHHHHH
Q 001912 208 GVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-----AGSILVVCPA-ILRLSWAEEL 262 (997)
Q Consensus 208 gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-----~gp~LIV~P~-sL~~qW~~Ei 262 (997)
+|.-.+..++-+++--..|+|||-+++..+.++.. ..++||++|+ ..+.+-.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 45544553344556889999999888887777664 4579999999 4555444444
No 203
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.18 E-value=0.17 Score=61.83 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=49.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHc-------CCeEEEEeCCCCHHHHHHHHHHhccC---CC--ce-EEEEeccccccccCcc
Q 001912 533 MIIFAHHLKVLDGVQEFISEK-------GIGFVRIDGNTLPRDRQSAVHSFQLS---NE--VK-IAIIGITAGGVGLDFS 599 (997)
Q Consensus 533 vLVFs~~~~~ld~L~~~L~~~-------gi~~~~idG~~s~~eR~~~i~~F~~~---~~--~~-VlLlSt~agg~GLNL~ 599 (997)
+|||...-.+++.+..+.... +.+-+.+ +-.+..+=.+++.+|-+. ++ .. .+.++-...++|||+.
T Consensus 564 ~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDFs 642 (945)
T KOG1132|consen 564 LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDFS 642 (945)
T ss_pred eEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCcc
Confidence 788888888888886666542 2222222 212333344455555421 11 22 3456666788999996
Q ss_pred c--ccEEEEecCCCCccHHhh
Q 001912 600 S--AQNVVFLELPQSPSLMLQ 618 (997)
Q Consensus 600 ~--A~~VI~~D~~wnp~~~~Q 618 (997)
. +..||..-+|+=|..+.|
T Consensus 643 D~~~RaVI~tGlPyP~~~D~~ 663 (945)
T KOG1132|consen 643 DDNGRAVIITGLPYPPVMDPR 663 (945)
T ss_pred ccCCceeEEecCCCCCCCCHH
Confidence 5 677888888876655544
No 204
>PRK06526 transposase; Provisional
Probab=93.98 E-value=0.3 Score=53.11 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEeCcchHHHHHHHHHH
Q 001912 208 GVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILRLSWAEELER 264 (997)
Q Consensus 208 gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~P~sL~~qW~~Ei~k 264 (997)
+..|+ .++.+++|.-+.|+|||..|.+++......|. ++++.. .+|.+++..
T Consensus 91 ~~~fi-~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~----~~l~~~l~~ 143 (254)
T PRK06526 91 TLDFV-TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA----AQWVARLAA 143 (254)
T ss_pred cCchh-hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH----HHHHHHHHH
Confidence 33455 44678999999999999999999887766554 444322 345555543
No 205
>PHA02533 17 large terminase protein; Provisional
Probab=93.86 E-value=0.59 Score=56.29 Aligned_cols=144 Identities=12% Similarity=0.139 Sum_probs=77.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh---hCCcEEEEeCc-chHHHHHHHHHH---HCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPA-ILRLSWAEELER---WLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~---~~gp~LIV~P~-sL~~qW~~Ei~k---~~p~~~~~ 272 (997)
.|.|+|++-+..+.. +...++.-.=..|||..+.+++.++. ....+++++|+ .....-.+.++. -.|.+...
T Consensus 59 ~L~p~Q~~i~~~~~~-~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHK-NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhc-CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 688999999887643 33446677789999998876554322 23468888996 111111133332 23321110
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc-CcEEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV-KRIVL 351 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~-~~~ll 351 (997)
. +... ......+.....|.+.|-+ .+.......+++|+||+|.+++ ....+.++....... ..++.
T Consensus 138 ~--i~~~-~~~~I~l~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~-----~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 G--IVEW-NKGSIELENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPN-----FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred c--eeec-CccEEEeCCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCC-----HHHHHHHHHHHHHcCCCceEE
Confidence 0 1111 1111112233344343332 1234456788999999999864 124455566554432 23577
Q ss_pred EeccCC
Q 001912 352 LSGTPS 357 (997)
Q Consensus 352 LTGTPi 357 (997)
+..||-
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 888884
No 206
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.81 E-value=0.71 Score=53.04 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
|.-.+|.-++|.|||..++.++..+... +++|+|.-..-..|......++--. . .++.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~--~-------------------~~l~ 140 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGIS--T-------------------ENLY 140 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCC--c-------------------ccEE
Confidence 3346788999999999999888776554 6888887664455655444443110 0 1223
Q ss_pred EEehhHHHHHHHhhhhccccEEEeccccccccCCC--CC-cHHH----HHHHHHHHhhcCcEEEEeccCC
Q 001912 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR--TS-EPEE----VKAVLDVAAKVKRIVLLSGTPS 357 (997)
Q Consensus 295 ItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~--~~-~s~~----~~al~~l~~~~~~~llLTGTPi 357 (997)
+.....+....+.+...+.++||||+.+.+..... .. .... ...+..++....-.++++|-..
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 33333444455555667899999999998743211 01 1111 2334455545556678887544
No 207
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.75 E-value=0.23 Score=62.27 Aligned_cols=82 Identities=13% Similarity=0.386 Sum_probs=58.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC-------eEEEEeCCCCHHHHHHHHHHhccC---CCceEEEEec--cccccccC
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGI-------GFVRIDGNTLPRDRQSAVHSFQLS---NEVKIAIIGI--TAGGVGLD 597 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi-------~~~~idG~~s~~eR~~~i~~F~~~---~~~~VlLlSt--~agg~GLN 597 (997)
.+.+|||...-..++.+.+.+...|+ ..+.+.+.- ..++.+++++|... +...| |+++ ...++|||
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gav-L~av~gGk~sEGID 599 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAV-LLSVAGGKVSEGID 599 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceE-EEEecCCcccCccc
Confidence 46788888888888888887765432 234455442 26889999999742 33456 5555 58899999
Q ss_pred ccc--ccEEEEecCCC-Cc
Q 001912 598 FSS--AQNVVFLELPQ-SP 613 (997)
Q Consensus 598 L~~--A~~VI~~D~~w-np 613 (997)
+.+ +..||++-+|+ +|
T Consensus 600 f~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred cCCCCCcEEEEEccCCCCC
Confidence 987 78899998887 44
No 208
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.68 E-value=0.23 Score=64.07 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=43.7
Q ss_pred cChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCc-chHHH-HHHH
Q 001912 200 VILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPA-ILRLS-WAEE 261 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~-sL~~q-W~~E 261 (997)
..||-|.+-+.. .+..++.+++-.++|+|||+-.+.-+..+. ...|++|-+++ .|..| +..+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kD 325 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKD 325 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhh
Confidence 678999995544 555566677777999999999876554332 45688888898 56566 3443
No 209
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.65 E-value=0.02 Score=73.80 Aligned_cols=176 Identities=31% Similarity=0.428 Sum_probs=99.5
Q ss_pred ccChhhHHHHHHH-HHhcCCCeEEEcCCCch--HHHHHHHHHHHHhh---CCcEEEEeCcchHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRF-GLRRGGRCLIADEMGLG--KTLQAIAIAACFIS---AGSILVVCPAILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~-~l~~~g~~ILaDemGLG--KTlqaial~~~~~~---~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..+.+||.....- +.....+.+++++.|+| ||+.+..+...... ....++++|..+..+|..+...++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-- 160 (866)
T COG0553 83 FILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFNIRL-- 160 (866)
T ss_pred cccCcchhhhhhhhhhhhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhccccc--
Confidence 3567777777654 33333457899999999 89998877665443 3468999999999999999887633211
Q ss_pred eEEEEccCCCC------cccccCCCeEEEEehhHHHHH----HHhhhhccc---cEEEeccccccccCCC-----CCcHH
Q 001912 273 DIHLVFGHRNN------PVHLTRFPRVVVISYTMLHRL----RKSMIEQDW---ALLIVDESHHVRCSKR-----TSEPE 334 (997)
Q Consensus 273 ~i~~~~g~~~~------~~~~~~~~~VvItTy~~l~~~----~~~l~~~~~---~~VIvDEaH~iKN~~~-----~~~s~ 334 (997)
.+....+.... ......... ++.+.+..... ...+....| +++++||+|.+.+... .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 161 AVLDKEGLRYLLKQYDAYNPFSTEDL-VLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred hhhhhhhhhhhhhhhcccccccchhh-hhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 00000000000 000000001 44444444332 122333446 8999999999876321 01123
Q ss_pred HHHHHHHHHhhcC------cEEEEeccCCCCChhHHHHHHHhhccCCcc
Q 001912 335 EVKAVLDVAAKVK------RIVLLSGTPSLSRPYDIFHQINMLWPGLLG 377 (997)
Q Consensus 335 ~~~al~~l~~~~~------~~llLTGTPi~n~~~El~~ll~~l~p~~~~ 377 (997)
.+..+.....+.. ....+++||......+++....+..+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLA 288 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchh
Confidence 3444443332222 234789999988877777766665554443
No 210
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.56 E-value=0.16 Score=62.57 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=84.2
Q ss_pred cChhhHHHHHHHHHh-cCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLR-RGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~-~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
.|-.-|+.|+...+. +.-..|++. +|+|||-+...++..+...| ++|+.+=+ +.+.|-.--+..+--.. +
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GM-PGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~------l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGM-PGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYI------L 741 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecC-CCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcce------e
Confidence 788899999988664 344566666 99999999998888777655 58888887 88888876666542110 1
Q ss_pred EccCCCCc----c-----------------cccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHH
Q 001912 277 VFGHRNNP----V-----------------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335 (997)
Q Consensus 277 ~~g~~~~~----~-----------------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~ 335 (997)
..|..... . ..-....||.+|--.+. .--|...+||++|||||-.+--
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l--------- 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL--------- 810 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc---------
Confidence 11111110 0 01112334444432221 1124456899999999998731
Q ss_pred HHHHHHHHhhcCcEEEEeccCCC
Q 001912 336 VKAVLDVAAKVKRIVLLSGTPSL 358 (997)
Q Consensus 336 ~~al~~l~~~~~~~llLTGTPi~ 358 (997)
--.+..+. ...+..|-|-+-|
T Consensus 811 P~~LgPL~--~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 PLCLGPLS--FSNKFVLVGDHYQ 831 (1100)
T ss_pred chhhhhhh--hcceEEEeccccc
Confidence 12334443 3345777787644
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=0.7 Score=54.14 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh--hC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI--SA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~--~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
++..++.-..|.|||.+++.++..+. .. .++.+|.-..-...=.+.+..|..... ..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp~------------------ 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-IPV------------------ 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-Cce------------------
Confidence 44567888999999999998887765 33 356666543311111123333332110 001
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh----hcCcEEEEeccCCCCChhHHHHHH
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA----KVKRIVLLSGTPSLSRPYDIFHQI 368 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~----~~~~~llLTGTPi~n~~~El~~ll 368 (997)
.++.+.+.+......+ .++++||||.+-+.. .+......+..+.. .....++|++|+-.+.+.+++..+
T Consensus 282 ~~~~~~~~l~~~l~~~--~~~DlVlIDt~G~~~-----~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 282 EVVYDPKELAKALEQL--RDCDVILIDTAGRSQ-----RDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred EccCCHHhHHHHHHHh--CCCCEEEEeCCCCCC-----CCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 1122233333333333 368999999997642 23333444544443 224478999998777777777766
Q ss_pred Hhhcc
Q 001912 369 NMLWP 373 (997)
Q Consensus 369 ~~l~p 373 (997)
..+.+
T Consensus 355 ~~~~~ 359 (424)
T PRK05703 355 SRLPL 359 (424)
T ss_pred CCCCC
Confidence 65543
No 212
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.37 E-value=1 Score=46.08 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=35.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHH
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
.+|.-+.|+|||..++.++..... ..++++|.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 478889999999999988776654 45789998876666666655554
No 213
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.31 E-value=0.55 Score=49.86 Aligned_cols=43 Identities=19% Similarity=0.040 Sum_probs=30.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW 258 (997)
++.++|.-+.|+|||..+.+++......+..++.+..+-+..|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh
Confidence 4568888999999999999988876655544455555444443
No 214
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.15 E-value=0.42 Score=59.69 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=37.1
Q ss_pred cChhhHHHHHHH---HHhc-----CCCeEEEcCCCchHHHHHHHHHHHH--hhCCcEEEEeCc-chHHH
Q 001912 200 VILPFQLEGVRF---GLRR-----GGRCLIADEMGLGKTLQAIAIAACF--ISAGSILVVCPA-ILRLS 257 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~-----~g~~ILaDemGLGKTlqaial~~~~--~~~gp~LIV~P~-sL~~q 257 (997)
..||-|.+-+.. .+.. ++.+++=..||+|||+--+.-+..+ ....+++|-+.+ .|-.|
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQ 93 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 568889885544 4443 2446666699999999887644433 234566666666 44444
No 215
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=93.05 E-value=0.064 Score=43.74 Aligned_cols=31 Identities=35% Similarity=0.791 Sum_probs=25.3
Q ss_pred cccccccccccccCCCcccccccccChhhhHhHhhccchh
Q 001912 905 LCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSGR 944 (997)
Q Consensus 905 lc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~~~~~~~~~ 944 (997)
-|+.|..|++. +..|||.+|+++|.-+....
T Consensus 5 HC~~CG~~Ip~---------~~~fCS~~C~~~~~k~qk~~ 35 (59)
T PF09889_consen 5 HCPVCGKPIPP---------DESFCSPKCREEYRKRQKRM 35 (59)
T ss_pred cCCcCCCcCCc---------chhhhCHHHHHHHHHHHHHH
Confidence 59999888763 68899999999998776553
No 216
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.97 E-value=0.94 Score=51.69 Aligned_cols=123 Identities=16% Similarity=0.309 Sum_probs=62.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-----CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-----gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
..|+.-+.|+|||..|..++..+... .|.-+..|..-...+ +.+.. ...++.+.+........... .
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c-~~i~~---~~hPdl~~l~~~~~~~~~~~--~-- 118 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW-RQIAQ---GAHPNLLHITRPFDEKTGKF--K-- 118 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH-HHHHc---CCCCCEEEeecccccccccc--c--
Confidence 47889999999999999999887652 232222222111111 11111 11122222211100000000 0
Q ss_pred EEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc---CcEEEEeccC
Q 001912 293 VVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV---KRIVLLSGTP 356 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~---~~~llLTGTP 356 (997)
-.++.+.++...+.+. ..+|.+|||||+|.+- .....++.+..... ...+++|..|
T Consensus 119 -~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-------~~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 119 -TAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-------RNAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred -ccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-------HHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 1233455665555444 2479999999999993 33345566665432 2345665444
No 217
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=92.95 E-value=0.58 Score=59.97 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=75.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~ 278 (997)
.|-+-|+++|..++..++-++|--..|+|||.+.-++...+...| .++.++|+.....=..+ -.. +.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e---~tG------i~--- 413 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG---GSG------IA--- 413 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh---ccC------cc---
Confidence 589999999998887555577888899999987655554444434 68889998654322221 000 00
Q ss_pred cCCCCcccccCCCeEEEEehhHHHHH--HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 279 GHRNNPVHLTRFPRVVVISYTMLHRL--RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 279 g~~~~~~~~~~~~~VvItTy~~l~~~--~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
-.|...+... .........++|||||+-++. +.....++.......-+++|.|=|
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~-------~~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG-------TRQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcccCC-------HHHHHHHHHhhhhCCCEEEEECCH
Confidence 0011111000 000011356899999999983 334455555444556689999988
Q ss_pred CCCC
Q 001912 357 SLSR 360 (997)
Q Consensus 357 i~n~ 360 (997)
-|-.
T Consensus 471 ~QLp 474 (988)
T PRK13889 471 QQLQ 474 (988)
T ss_pred HHcC
Confidence 6543
No 218
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=0.23 Score=58.04 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=56.0
Q ss_pred EcCCCchHHHHHHHHHHHHhhCC--cEEEEeCc-chHHHHHHHHHH----HCCCCCCceEEEE-----ccCCCCcccccC
Q 001912 222 ADEMGLGKTLQAIAIAACFISAG--SILVVCPA-ILRLSWAEELER----WLPFCLPADIHLV-----FGHRNNPVHLTR 289 (997)
Q Consensus 222 aDemGLGKTlqaial~~~~~~~g--p~LIV~P~-sL~~qW~~Ei~k----~~p~~~~~~i~~~-----~g~~~~~~~~~~ 289 (997)
-..+|+|||+++.+++.++...| .+|..|-. +++..-..-|.. -+-+- ..|.+. ...-........
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~--e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFS--ENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhh--hhhhcCCceeeeeeecccCccCC
Confidence 45799999999999888776665 46776665 666543322211 10000 001000 001111222333
Q ss_pred CCeEEEEehhHHHHHHH----------hhhhccccEEEeccccccc
Q 001912 290 FPRVVVISYTMLHRLRK----------SMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 290 ~~~VvItTy~~l~~~~~----------~l~~~~~~~VIvDEaH~iK 325 (997)
.-.|++||-+.|..+.. .+. ..--+.+-||||++-
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~-~~klvfl~deahhln 125 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLK-DQKLVFLADEAHHLN 125 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHh-hCceEEEechhhhhh
Confidence 55799999998876432 222 123467889999994
No 219
>CHL00181 cbbX CbbX; Provisional
Probab=92.53 E-value=0.67 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..+|.-++|+|||..|-+++..+..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999877643
No 220
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.44 E-value=0.6 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+++|.-++|+|||..|-+++..+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999888877654
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.42 E-value=2 Score=49.25 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCC
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~ 291 (997)
+.+.|.-..|+|||..+..++..+...| ++++|.-- ..+.||.. |.... .+ .
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~----yae~l---gi----------------p 298 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD----YVKTI---GF----------------E 298 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH----Hhhhc---CC----------------c
Confidence 3456788899999999999988877666 56666653 34555553 32211 01 0
Q ss_pred eEEEEehhHHHHHHHhhhh-ccccEEEeccccccccCCCCCcHHHHHHHHHHHhh-cCc--EEEEeccCCCCChhHHHHH
Q 001912 292 RVVVISYTMLHRLRKSMIE-QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK-VKR--IVLLSGTPSLSRPYDIFHQ 367 (997)
Q Consensus 292 ~VvItTy~~l~~~~~~l~~-~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~-~~~--~llLTGTPi~n~~~El~~l 367 (997)
-+++.+.+.+......+.. .++|+||||-+=+.- .+......+..+... .+. .|.|++|--.+...++...
T Consensus 299 v~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~-----kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 299 VIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY-----RASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCEEEEeCccccC-----cCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 1122344555554444443 369999999986642 123334444444332 222 3556776444444444433
Q ss_pred HH
Q 001912 368 IN 369 (997)
Q Consensus 368 l~ 369 (997)
++
T Consensus 374 F~ 375 (436)
T PRK11889 374 FK 375 (436)
T ss_pred hc
Confidence 33
No 222
>PRK14974 cell division protein FtsY; Provisional
Probab=92.17 E-value=1.1 Score=50.61 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=63.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
-+++.-..|.|||-++..++..+...| +++++... ....||..-.... . +.++...... ++
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l-g------v~v~~~~~g~------dp- 207 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL-G------VKVIKHKYGA------DP- 207 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc-C------CceecccCCC------CH-
Confidence 456788999999999998888777665 56666543 3455665433332 1 1111110000 00
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---hcCcEEEEeccCC
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRIVLLSGTPS 357 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~~~~~llLTGTPi 357 (997)
...+..........+.++||||.++++.+ .......+..+.. .....+.+++|.-
T Consensus 208 -----~~v~~~ai~~~~~~~~DvVLIDTaGr~~~-----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 -----AAVAYDAIEHAKARGIDVVLIDTAGRMHT-----DANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred -----HHHHHHHHHHHHhCCCCEEEEECCCccCC-----cHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 01111222223345789999999999842 2334444444322 2234577777753
No 223
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.94 Score=53.32 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 207 EGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 207 ~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..+..++..+. ..|+.-+.|.|||-.|..++..+.-
T Consensus 28 ~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 28 GALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 34445555433 2599999999999999999887653
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.86 E-value=1 Score=48.39 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGS 245 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp 245 (997)
...+|.-+.|+|||-.+.+++......|.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~ 74 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGR 74 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 35788999999999988887776554443
No 225
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.82 E-value=0.74 Score=45.33 Aligned_cols=68 Identities=22% Similarity=0.458 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCC----eEEEEeCCCCHHHHHHHHHHhccCCC--ceEEEEeccc--cccccCccc--ccEEEEecCCC
Q 001912 542 VLDGVQEFISEKGI----GFVRIDGNTLPRDRQSAVHSFQLSNE--VKIAIIGITA--GGVGLDFSS--AQNVVFLELPQ 611 (997)
Q Consensus 542 ~ld~L~~~L~~~gi----~~~~idG~~s~~eR~~~i~~F~~~~~--~~VlLlSt~a--gg~GLNL~~--A~~VI~~D~~w 611 (997)
.++.+.+.+...+. .-+.+.+.. ..+..++++.|++..+ ..| |+++.. .++||||++ +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~i-L~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGAL-LLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEE-EEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45556666665543 234555543 3455789999986433 235 554444 899999987 67899988775
No 226
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.81 E-value=1.1 Score=45.94 Aligned_cols=109 Identities=23% Similarity=0.216 Sum_probs=63.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEeh
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISY 298 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy 298 (997)
++.-.|.+|||..-|-.+..+...| +++|..|..= ..+.. ..+.--.|.+ ..-++|-+-
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD---------~R~~~---~~V~Sr~G~~--------~~A~~i~~~ 67 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID---------TRYGV---GKVSSRIGLS--------SEAVVIPSD 67 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc---------ccccc---ceeeeccCCc--------ccceecCCh
Confidence 5677899999999888888777655 6888888621 11110 0111111111 223444444
Q ss_pred hHHHHHHHhhh-hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 299 TMLHRLRKSMI-EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 299 ~~l~~~~~~l~-~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
..+........ ....++|+|||||.+. ....-.+..+...-...+++.|.
T Consensus 68 ~~i~~~i~~~~~~~~~~~v~IDEaQF~~-------~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 68 TDIFDEIAALHEKPPVDCVLIDEAQFFD-------EELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred HHHHHHHHhcccCCCcCEEEEehhHhCC-------HHHHHHHHHHHhhcCCEEEEecc
Confidence 44444333322 1237899999999984 34455666676554667777775
No 227
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.63 E-value=1.2 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.++||.-+.|+|||..|-+++..+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999988887654
No 228
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.55 E-value=32 Score=43.51 Aligned_cols=64 Identities=27% Similarity=0.241 Sum_probs=44.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C----cEEEEeCc-chHHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G----SILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g----p~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
..|-|-|+++|.+. .|.+++--..|+|||.+.+.-+.++... + .+|+|+-+ .......+-+.+.
T Consensus 3 ~~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT---EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC---CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 35889999999742 4566777779999999999888777653 2 37888876 3333344444443
No 229
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.46 E-value=0.58 Score=56.80 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=99.0
Q ss_pred CChhhhccChhhHHHHHHHHHhcC-CCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHH-HHHHCC
Q 001912 193 LPKSLLDVILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEE-LERWLP 267 (997)
Q Consensus 193 lp~~l~~~L~pyQ~~gV~~~l~~~-g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~E-i~k~~p 267 (997)
.|........|||++-...+-... ..+.+.-..-+|||..++.++.+... .+|+|+|.|+ .....|..+ |...+-
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 455566688999999998776543 25678888999999988887776654 5679999999 788888754 333321
Q ss_pred CCCCceEEEEcc----CCCC---cccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHH
Q 001912 268 FCLPADIHLVFG----HRNN---PVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL 340 (997)
Q Consensus 268 ~~~~~~i~~~~g----~~~~---~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~ 340 (997)
...... ..+.. ..++ ...+. ...+.++...+-.. |.....++|++||...+-....+...-...+..
T Consensus 89 ~sp~l~-~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~----l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 89 ASPVLR-RKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSN----LRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred hCHHHH-HHhCchhhcccCCchhheecC-CCEEEEEeCCCCcc----cccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 111100 01111 1111 11111 34566666655433 455789999999999984221111111122222
Q ss_pred HHHh-hcCcEEEEeccCCCCChhHHHH
Q 001912 341 DVAA-KVKRIVLLSGTPSLSRPYDIFH 366 (997)
Q Consensus 341 ~l~~-~~~~~llLTGTPi~n~~~El~~ 366 (997)
.... ...+++++..||....-..+..
T Consensus 163 R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 163 RTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred HHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 2211 2567899999998654333333
No 230
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.39 E-value=1.4 Score=53.76 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+..++.++. ..|+..+.|.|||..|.+++..+.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444444555442 459999999999999999988764
No 231
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=2.2 Score=48.24 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=35.4
Q ss_pred cChhhHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 200 VILPFQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
.+||+|....+.++.+|. ..|+.-+.|.|||..|.+++..+.-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 368999999888887543 4678999999999999999988764
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.98 E-value=2.1 Score=42.20 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~ 252 (997)
.+|.-+.|+|||..+..++..... .++++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 356777999999999988877654 4567666655
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=90.71 E-value=0.48 Score=52.73 Aligned_cols=38 Identities=24% Similarity=0.122 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhcCC-CeEEEcCCCchHHHHHHHHHHHH
Q 001912 203 PFQLEGVRFGLRRGG-RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g-~~ILaDemGLGKTlqaial~~~~ 240 (997)
-+|+-++.-++.-.- =+.|.-.-|+|||+-|+|...+.
T Consensus 231 ~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleq 269 (436)
T COG1875 231 AEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQ 269 (436)
T ss_pred HHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHH
Confidence 488888877776322 35677889999999999876653
No 234
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1.7 Score=52.19 Aligned_cols=94 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred cChhhHHHHHHHHHh-----------cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCC
Q 001912 200 VILPFQLEGVRFGLR-----------RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPF 268 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~-----------~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~ 268 (997)
......+++|.|.+. ...++||.-+.|+|||+.|-+++.. ...+++-|-..+++..|.-|..+-.-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~~l~sk~vGesek~ir- 325 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGSELLSKWVGESEKNIR- 325 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCHHHhccccchHHHHHH-
Confidence 345566666666432 2347899999999999999999884 25566666655888888877766321
Q ss_pred CCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCC
Q 001912 269 CLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT 330 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~ 330 (997)
.....-......+|.+||...+....+.
T Consensus 326 ----------------------------------~~F~~A~~~~p~iiFiDEiDs~~~~r~~ 353 (494)
T COG0464 326 ----------------------------------ELFEKARKLAPSIIFIDEIDSLASGRGP 353 (494)
T ss_pred ----------------------------------HHHHHHHcCCCcEEEEEchhhhhccCCC
Confidence 1111222467889999999999875543
No 235
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=90.52 E-value=1.5 Score=56.73 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=76.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVF 278 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~ 278 (997)
.|-+-|+++|..+...++-++|--.-|+|||.+.-++...+...| .++.++|+.-..+ .+.+-.. .. .
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~---~L~e~~G-i~---a---- 449 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE---GLEKEAG-IQ---S---- 449 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH---HHHHhhC-CC---e----
Confidence 688999999998765444467778899999998888776655444 6888899854432 2222111 00 0
Q ss_pred cCCCCcccccCCCeEEEEehhHH-HHH-HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 279 GHRNNPVHLTRFPRVVVISYTML-HRL-RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 279 g~~~~~~~~~~~~~VvItTy~~l-~~~-~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
.|...+ ... .....-..-++||||||.++- +.....++.......-+++|.|-|
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~-------~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA-------SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC-------HHHHHHHHHHHHhcCCEEEEECCH
Confidence 011110 000 000001245799999999983 344555666554556689999988
Q ss_pred CCCC
Q 001912 357 SLSR 360 (997)
Q Consensus 357 i~n~ 360 (997)
-|-.
T Consensus 506 ~QL~ 509 (1102)
T PRK13826 506 EQLQ 509 (1102)
T ss_pred HHcC
Confidence 6543
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.50 E-value=2.8 Score=45.31 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
++.+|.-..|+|||..+.+++.++...|..+++++ +..|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it---~~~l~~~l~~ 144 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT---VADIMSAMKD 144 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE---HHHHHHHHHH
Confidence 36889999999999999999998877665444443 3556555544
No 237
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.38 E-value=0.61 Score=56.22 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=69.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh---hCCcEEEEeCc-chHHHHHHHH----HHHCCCCCCceEEEEccCCCCcccccC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPA-ILRLSWAEEL----ERWLPFCLPADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~---~~gp~LIV~P~-sL~~qW~~Ei----~k~~p~~~~~~i~~~~g~~~~~~~~~~ 289 (997)
-.++.-+==-|||....+++..+. ..-.+++++|. .....-.+|+ ++|++.. .+....| ......+..
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~---~v~~vkG-e~I~i~f~n 331 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGAS---RVDHVKG-ETISFSFPD 331 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchh---heeeecC-cEEEEEecC
Confidence 345666677899997776665444 34468999997 5555544444 4565532 2322222 111001111
Q ss_pred C--CeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh-hcCcEEEEecc
Q 001912 290 F--PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA-KVKRIVLLSGT 355 (997)
Q Consensus 290 ~--~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~-~~~~~llLTGT 355 (997)
. ..|.+.|- .....+....++++||||||.|+ .....+++.... .....|.+|-|
T Consensus 332 G~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk-------~~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 332 GSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIR-------PDAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred CCccEEEEEec----cCCCCccCCcccEEEEechhhCC-------HHHHHHHHHHHhccCccEEEEecC
Confidence 1 23444311 22234556789999999999996 344566665543 34556777765
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.37 E-value=1.6 Score=52.98 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 204 FQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 204 yQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+-+..+..++..+. ..||.-+.|+|||..+..++..+.-
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33344444554333 3588999999999999999988754
No 239
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.23 E-value=2.4 Score=50.15 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=70.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvIt 296 (997)
-.+|.-++|.|||..++.++..... .+++|.|.-..-..|......++--.. . ++.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~--~-------------------~l~~~ 140 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPS--D-------------------NLYLL 140 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCCh--h-------------------cEEEe
Confidence 4678999999999999988877654 568888887655666655554432111 0 02222
Q ss_pred ehhHHHHHHHhhhhccccEEEeccccccccCCCC--C-cHHHH----HHHHHHHhhcCcEEEEeccC
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT--S-EPEEV----KAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~--~-~s~~~----~al~~l~~~~~~~llLTGTP 356 (997)
.-..+......+...+.++||||+.+.+...... . ..... ..+..++....-.+++++-.
T Consensus 141 ~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hv 207 (446)
T PRK11823 141 AETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHV 207 (446)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 2223444445555678999999999987532111 1 11112 23445544455557777643
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.17 E-value=0.72 Score=48.08 Aligned_cols=133 Identities=14% Similarity=0.200 Sum_probs=71.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
.++.-++|.|||-++.-++.++... .++.+|+--.-..-=.++++.|...+ .+.+....... ..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~------------~~ 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES------------DP 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS------------CH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch------------hh
Confidence 3577889999999999888877644 45777776544333344455543211 12222111100 00
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccccCCCCCcHH---HHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhh
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPE---EVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~---~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l 371 (997)
-+.+....+.+...++|+|+||-+-+.-+ +.. ..+.+..........+.|++|--+..+.++......+
T Consensus 69 ~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~-----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 69 AEIAREALEKFRKKGYDLVLIDTAGRSPR-----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEE-SSSST-----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCcchh-----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 11233334445556799999999976531 222 2334444443445678899986555444444444433
No 241
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.08 E-value=1.4 Score=47.10 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHhcCC-CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcc
Q 001912 211 FGLRRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAI 253 (997)
Q Consensus 211 ~~l~~~g-~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~s 253 (997)
|.+..+. .+.+.-|+|+|||+..=++...+.+..-+.|+.|+.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~ 88 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKP 88 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCc
Confidence 4555444 466788999999999885555544444456677773
No 242
>PRK08181 transposase; Validated
Probab=89.99 E-value=4.2 Score=44.57 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=33.6
Q ss_pred hhHHHHHH----HHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 203 PFQLEGVR----FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 203 pyQ~~gV~----~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
.-|..++. |. .++.+++|.-++|+|||..+.+++......|...+.++
T Consensus 90 ~~~~~~L~~~~~~~-~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 90 KAQVMAIAAGDSWL-AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred HHHHHHHHHHHHHH-hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34444443 43 35667999999999999999999887776664334443
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.68 E-value=3.1 Score=47.04 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCC--CeEEEcCCCchHHHHHHHHHHHHhhC
Q 001912 203 PFQLEGVRFGLRRGG--RCLIADEMGLGKTLQAIAIAACFISA 243 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g--~~ILaDemGLGKTlqaial~~~~~~~ 243 (997)
++.++.+.-++..+. ..+|.-+.|+|||..+.+++..+...
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 344444444555444 68899999999999999998876543
No 244
>PLN03025 replication factor C subunit; Provisional
Probab=89.53 E-value=5.2 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..||.-+.|+|||-.+.+++..+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5899999999999999999887643
No 245
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.51 E-value=2.3 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..||.-..|+|||..+..++..+.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 358999999999999999988764
No 246
>PRK08727 hypothetical protein; Validated
Probab=89.29 E-value=2.3 Score=45.67 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=24.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
-.+|.-+.|+|||-.+.+++......+.-.+..|
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3789999999999988888777666554333333
No 247
>PRK06921 hypothetical protein; Provisional
Probab=89.16 E-value=2.7 Score=46.07 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCP 251 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P 251 (997)
+.+.+|.-++|+|||..+.|++..+... |...+.++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568899999999999999999887765 54434444
No 248
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.07 E-value=2.8 Score=45.73 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHhcCC-CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 212 GLRRGG-RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 212 ~l~~~g-~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.+..+. -++|.-+.|+|||..+-.++..+.
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 345444 477899999999999888876654
No 249
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.77 E-value=4.3 Score=44.85 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=61.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh-------CCcE-EEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS-------AGSI-LVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~-------~gp~-LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~ 287 (997)
.+.+|.-+.|.|||..+=-+...+.. .-|+ +|-+|. .-..-....|...+.-. + .....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP------~--~~~~~---- 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP------Y--RPRDR---- 129 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc------c--CCCCC----
Confidence 36788888999999977555543321 1144 444555 44444444444433210 0 00000
Q ss_pred cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 288 ~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
....-......+...+..++||||.|++-.............++.+...-+--+.+.||+
T Consensus 130 ---------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 130 ---------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ---------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 011111223456678999999999999754322222222233333433333347788986
No 250
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.70 E-value=3.2 Score=48.26 Aligned_cols=39 Identities=28% Similarity=0.216 Sum_probs=28.0
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~ 255 (997)
...+++|.-+.|+|||..|-+++... ..+++.+....+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~--~~~~i~v~~~~l~ 202 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET--NATFIRVVGSELV 202 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh--CCCEEEeehHHHh
Confidence 34578999999999999999988764 3455555444443
No 251
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.69 E-value=0.38 Score=49.09 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCeEEEEehhHHHHHH--Hhh--hhccccEEEecccccccc
Q 001912 290 FPRVVVISYTMLHRLR--KSM--IEQDWALLIVDESHHVRC 326 (997)
Q Consensus 290 ~~~VvItTy~~l~~~~--~~l--~~~~~~~VIvDEaH~iKN 326 (997)
..+|||++|..+.... ..+ ...+-.+|||||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 5789999999886532 222 224567999999999843
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.66 E-value=3.7 Score=47.09 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=68.5
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHh-hCC--cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccC
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFI-SAG--SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~-~~g--p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~ 289 (997)
+.+++.++|.-++|.|||.++..++..+. ..| ++.+|+-......=.+.+..|..... ..+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v~~~-------------- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-VPVH-------------- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-CceE--------------
Confidence 34567788999999999999999987754 323 56666655443222334444432110 0111
Q ss_pred CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH---hhcCcEEEEeccCCCCChhHHHH
Q 001912 290 FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA---AKVKRIVLLSGTPSLSRPYDIFH 366 (997)
Q Consensus 290 ~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~---~~~~~~llLTGTPi~n~~~El~~ 366 (997)
++-+-..+......+ .+.++|+||++=+.- .+......+..+. ......+.|++|--...+.+.+.
T Consensus 199 ----~~~~~~~l~~~l~~l--~~~DlVLIDTaG~~~-----~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 199 ----AVKDGGDLQLALAEL--RNKHMVLIDTIGMSQ-----RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ----ecCCcccHHHHHHHh--cCCCEEEEcCCCCCc-----ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 111222222322333 467999999996542 1122222233221 12345788999975555555443
No 253
>PRK06893 DNA replication initiation factor; Validated
Probab=88.59 E-value=2.5 Score=45.18 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=24.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
..+|.-+.|+|||-.+.+++..+...++-.+..+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 3588999999999999998887665554333333
No 254
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.40 E-value=0.52 Score=48.19 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
++.-+|++|||...|..+..+...+ +++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4567899999999999887765544 67777776
No 255
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=6.6 Score=44.87 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=87.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
|.-.+|+-|.|.||+-.-+=++..+...+++|.|+=---..||+-...|.--. ..++.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~---------------------~~~l~l 151 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLP---------------------TNNLYL 151 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCC---------------------ccceEE
Confidence 33477899999999988887777777777999999998889999888875210 145778
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccccCCCC----CcH---HHHHHHHHHHhhcCcEEEEeccC
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT----SEP---EEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~----~~s---~~~~al~~l~~~~~~~llLTGTP 356 (997)
.....+......+...+++++|||=.+.+-+..-. .-+ ..+..+..++....-.+++.|--
T Consensus 152 ~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 152 LAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred ehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 88888888888888999999999999998653311 111 12345555554444456666653
No 256
>PTZ00293 thymidine kinase; Provisional
Probab=87.84 E-value=4.4 Score=42.53 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=26.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc
Q 001912 220 LIADEMGLGKTLQAIAIAACFISA-GSILVVCPA 252 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~ 252 (997)
++.-+||+|||...|-.+..+... .+++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCceEEEEec
Confidence 567789999999888877766554 478998887
No 257
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.69 E-value=2.8 Score=47.91 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=81.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh--h-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI--S-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~--~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
++-..|.-++|.|||-+..=+++.+. . ..++=||+--+=.--=.+.++.|..-+ .-+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im-------------------~vp~ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM-------------------GVPL 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh-------------------CCce
Confidence 55567889999999999877776665 2 334655555433333333444443211 0112
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH---hhcCcEEEEeccCCCCChhHHHHHHH
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA---AKVKRIVLLSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~---~~~~~~llLTGTPi~n~~~El~~ll~ 369 (997)
.++.+...|......+ .+.|+|.||=+=+= ..+......+..+. .....-|.||+|--...+.|++..+.
T Consensus 264 ~vv~~~~el~~ai~~l--~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 264 EVVYSPKELAEAIEAL--RDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred EEecCHHHHHHHHHHh--hcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 3566666666655555 45699999977542 12233344444443 23456699999998888999998888
Q ss_pred hhccC
Q 001912 370 MLWPG 374 (997)
Q Consensus 370 ~l~p~ 374 (997)
.+...
T Consensus 337 ~~~i~ 341 (407)
T COG1419 337 LFPID 341 (407)
T ss_pred cCCcc
Confidence 77543
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.68 E-value=5.8 Score=44.84 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHH-------hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 201 ILPFQLEGVRFGL-------RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 201 L~pyQ~~gV~~~l-------~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
.+.++..++..+. ..+.+.+|.-++|+|||..+.|++..+...|..++..+.
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 4455555555322 235678899999999999999999988877765555554
No 259
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.65 E-value=5.2 Score=47.42 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
|.-.+|+-++|.|||..++.++...... +++|.|.-..-..|......++-- ... .+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~--~~~-------------------~l~ 152 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGL--PEP-------------------NLY 152 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCC--ChH-------------------HeE
Confidence 3346789999999999999887766554 688999887666676655555321 011 112
Q ss_pred EEehhHHHHHHHhhhhccccEEEeccccccccCCC----CCcHHH---HHHHHHHHhhcCcEEEEecc
Q 001912 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKR----TSEPEE---VKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 295 ItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~----~~~s~~---~~al~~l~~~~~~~llLTGT 355 (997)
+.....+......+...+.++||||..+.+....- ....+. ...+..++......++||+-
T Consensus 153 ~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~h 220 (454)
T TIGR00416 153 VLSETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGH 220 (454)
T ss_pred EcCCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 22222233444455567899999999998753211 011111 22344555455556777763
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.64 E-value=1.1 Score=42.66 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchH
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~ 255 (997)
.||--+.|+|||..+-.++..+ .-+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccccccccccccc
Confidence 3667789999999999998875 2345555555444
No 261
>PRK05642 DNA replication initiation factor; Validated
Probab=87.62 E-value=3.2 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=20.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
..+|.-+.|+|||--+-+++..+...+
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~ 73 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRG 73 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 467889999999988777766554433
No 262
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.59 E-value=1.7 Score=53.72 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=48.3
Q ss_pred hhHHHHHHHHH---hcCC-CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 203 PFQLEGVRFGL---RRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 203 pyQ~~gV~~~l---~~~g-~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
-.|-.++.-+. ..+. ..+|.--+|+|||+++..++... ..|+|||+|+ .+..||..|++.|+|.
T Consensus 12 ~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 12 GDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred hHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 35666665543 2232 34566679999999998877653 5799999999 7888999999999986
No 263
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=87.48 E-value=0.29 Score=45.86 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=38.6
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHHH-HHHHhhcc
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLRE-ELFRIEHG 956 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r~-~~~~~~~g 956 (997)
-+|-.|..++.+..+. .-++....|||.+|...|.+|++++.|+= .+|.+-+|
T Consensus 5 e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g 61 (131)
T PRK14891 5 RTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKG 61 (131)
T ss_pred eeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcC
Confidence 3788888876544332 33567889999999999999999998874 34454444
No 264
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.17 E-value=5.3 Score=42.91 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=33.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
|.-.+++-+.|+|||..++-++..... ..++++|.-..-..+-.+.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHH
Confidence 445788999999999999988776544 4578888855444443333433
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=87.05 E-value=5.7 Score=43.37 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchH
Q 001912 205 QLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILR 255 (997)
Q Consensus 205 Q~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~ 255 (997)
++.++.| +.++.+++|.-+.|+|||..+.+++......| .++++.-..++
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 4445556 55577888999999999999999877655555 55555433333
No 266
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.76 E-value=2.8 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.++.||.-+.|.|||..+-+++....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhh
Confidence 44789999999999999988887654
No 267
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.70 E-value=9.4 Score=42.82 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCC--CeEE-EcCCCchHHHHHHHHHHHH
Q 001912 204 FQLEGVRFGLRRGG--RCLI-ADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 204 yQ~~gV~~~l~~~g--~~IL-aDemGLGKTlqaial~~~~ 240 (997)
.....+...+.++. +.+| .-+.|+|||-.+-+++...
T Consensus 28 ~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 28 ADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 33334433343332 4555 8999999999998887654
No 268
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=86.70 E-value=4.1 Score=43.32 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCcchHHHHHHHHHHHCCCCC----CceEEEEccCCCCcccccC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPAILRLSWAEELERWLPFCL----PADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~sL~~qW~~Ei~k~~p~~~----~~~i~~~~g~~~~~~~~~~ 289 (997)
|.-.+|.-+.|+|||+.++-++..... ..+++.|.-..-..++.+.+..+-.+.. ...+.+.........
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~---- 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG---- 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST----
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc----
Confidence 445788889999999999988766544 5689999977666777777766532110 001222211111000
Q ss_pred CCeEEEEehhHH-HHHHHhhhhccccEEEeccccccccCCCCCcH--HHHHHHHHHHhhcCcEEEEecc
Q 001912 290 FPRVVVISYTML-HRLRKSMIEQDWALLIVDESHHVRCSKRTSEP--EEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 290 ~~~VvItTy~~l-~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s--~~~~al~~l~~~~~~~llLTGT 355 (997)
.. -.+.+.+ ......+...+.++||+|--..+ ........ .....+...........++|.+
T Consensus 95 ~~---~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WS---PNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp -T---SCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cc---ccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00 1122222 33444555667799999998888 22222211 2233444444445556777777
No 269
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.61 E-value=1.5 Score=50.63 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=36.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
+.+|.-+.|.|||..+.|++.+. ...+.=|.|++|...|.-|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~--~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATES--GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhh--cceEeeccHHHhhhhccChHHHH
Confidence 56899999999999999999863 33467788889998887776553
No 270
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=86.39 E-value=5.4 Score=49.08 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 204 FQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 204 yQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+=+..+..++..|. ..|+.-+.|+|||..|-.++..+.-
T Consensus 23 ~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 23 HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 33445555665443 2489999999999999999887654
No 271
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.32 E-value=4.8 Score=49.07 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=65.9
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHH---------HHCCCCCCceEEEEccC
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELE---------RWLPFCLPADIHLVFGH 280 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~---------k~~p~~~~~~i~~~~g~ 280 (997)
+++.-.++ .-+=|-|||..+..++..+.. .-.++|.+|. +....-.+++. .|+|... .+....+.
T Consensus 185 fkq~~tV~-taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~--~iv~vkgg 261 (752)
T PHA03333 185 YGKCYTAA-TVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEF--KIVTLKGT 261 (752)
T ss_pred HhhcceEE-EeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCc--eEEEeeCC
Confidence 33333444 445999999887755444332 4468999996 44444333333 3444321 11111111
Q ss_pred CCCccccc----C--CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEec
Q 001912 281 RNNPVHLT----R--FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354 (997)
Q Consensus 281 ~~~~~~~~----~--~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTG 354 (997)
........ . ...|...+- -.+......+++||||||+.|. ...+.++..........+.+.-
T Consensus 262 ~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~-------~~~l~aIlP~l~~~~~k~IiIS 329 (752)
T PHA03333 262 DENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVN-------PGALLSVLPLMAVKGTKQIHIS 329 (752)
T ss_pred eeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCC-------HHHHHHHHHHHccCCCceEEEe
Confidence 11000000 0 011222111 1223444578999999999995 2456677777654445566666
Q ss_pred cCC
Q 001912 355 TPS 357 (997)
Q Consensus 355 TPi 357 (997)
||.
T Consensus 330 S~~ 332 (752)
T PHA03333 330 SPV 332 (752)
T ss_pred CCC
Confidence 664
No 272
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.31 E-value=12 Score=40.95 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~ 290 (997)
+....+.-..|+|||..+..++..+...+ ++.+|.-. ..+.||...... . .
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~----~--------------------~ 130 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT----I--------------------G 130 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh----c--------------------C
Confidence 44667888899999998888877765544 56655543 456666543222 1 0
Q ss_pred CeEEE-EehhHHHHHHHhhhh-ccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc---CcEEEEeccCCCCChhHHH
Q 001912 291 PRVVV-ISYTMLHRLRKSMIE-QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV---KRIVLLSGTPSLSRPYDIF 365 (997)
Q Consensus 291 ~~VvI-tTy~~l~~~~~~l~~-~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~---~~~llLTGTPi~n~~~El~ 365 (997)
..++. .+.+.+......+.. .++++||||-+=+.- .+......+..+.... ...+.|++|--.+...+..
T Consensus 131 ~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~-----~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 131 FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY-----RASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc-----CCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 11111 233344443444433 479999999986652 1234444454443322 2356788886555544444
Q ss_pred HHHH
Q 001912 366 HQIN 369 (997)
Q Consensus 366 ~ll~ 369 (997)
..+.
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 4433
No 273
>PRK00807 50S ribosomal protein L24e; Validated
Probab=86.29 E-value=0.32 Score=38.88 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=32.6
Q ss_pred cccccccccccccCCC---cccccccccChhhhHhHhhccchhHHH
Q 001912 905 LCKLCQKTCKSKNAKN---AEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 905 lc~~c~~~~~~~~~~~---~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
+|-.|..++....+.. -++..-.|||.+|...|.++.++..++
T Consensus 3 ~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~ 48 (52)
T PRK00807 3 TCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLK 48 (52)
T ss_pred ccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCccc
Confidence 5888888765443332 356788999999999999999987654
No 274
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.28 E-value=5.2 Score=46.49 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=30.2
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW 258 (997)
..+.+++|.-+.|+|||..+-+++... ..+++.+.+..+...|
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l--~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT--TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc--CCCEEEEehHHHHHHh
Confidence 345689999999999999998887753 3455555554444333
No 275
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.27 E-value=4.3 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+.||.-+.|.|||..+-+++....
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999988877653
No 276
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.27 E-value=4.3 Score=48.07 Aligned_cols=45 Identities=20% Similarity=0.089 Sum_probs=29.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCcchHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~sL~~qW~~Ei 262 (997)
..+|.-++|+|||..+-+++..+... ..++.|.+..+.......+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 47789999999999888887765532 3455555545554444443
No 277
>PF13173 AAA_14: AAA domain
Probab=86.24 E-value=5.4 Score=38.26 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.7
Q ss_pred cccEEEeccccccccCCCCCcHHHHHHHHHHHhhc-CcEEEEeccCC
Q 001912 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV-KRIVLLSGTPS 357 (997)
Q Consensus 312 ~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~-~~~llLTGTPi 357 (997)
+-.+|++||+|++.+ ....+..+.... ...+++||+-.
T Consensus 61 ~~~~i~iDEiq~~~~--------~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--------WEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--------HHHHHHHHHHhccCceEEEEccch
Confidence 677899999999953 244455554444 45799999854
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.17 E-value=7.6 Score=45.11 Aligned_cols=126 Identities=17% Similarity=0.276 Sum_probs=68.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH-hhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACF-ISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~-~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvIt 296 (997)
.++.-..|.|||.++.-++..+ ...| .+++|.=-.....=...+.+|...... .+ .
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv--------------------p~--~ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM--------------------PF--Y 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCC--------------------Ce--e
Confidence 5678899999999999988755 3444 455555333221111244555322110 00 1
Q ss_pred ehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh------cCcEEEEeccCCCCChhHHHHHHHh
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK------VKRIVLLSGTPSLSRPYDIFHQINM 370 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~------~~~~llLTGTPi~n~~~El~~ll~~ 370 (997)
....+......+...++++||||=+-+.- .+......+..+... ....+.|++|--++...+.......
T Consensus 284 ~~~~~~~l~~~l~~~~~D~VLIDTaGr~~-----rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~ 358 (432)
T PRK12724 284 PVKDIKKFKETLARDGSELILIDTAGYSH-----RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYES 358 (432)
T ss_pred ehHHHHHHHHHHHhCCCCEEEEeCCCCCc-----cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcC
Confidence 11112333344445689999999876542 223445555554432 2456889999665555555544443
Q ss_pred h
Q 001912 371 L 371 (997)
Q Consensus 371 l 371 (997)
+
T Consensus 359 ~ 359 (432)
T PRK12724 359 L 359 (432)
T ss_pred C
Confidence 3
No 279
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.13 E-value=2.8 Score=43.23 Aligned_cols=141 Identities=15% Similarity=0.221 Sum_probs=70.9
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHH-HHHH--HHHCCCCCCceEEEEc-cCCCCcccccC
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSW-AEEL--ERWLPFCLPADIHLVF-GHRNNPVHLTR 289 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW-~~Ei--~k~~p~~~~~~i~~~~-g~~~~~~~~~~ 289 (997)
..|.+++--..|-|||-.|++++......| +++||== +...| ..|. .+.++ .+.+.. +..-.... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF--lKg~~~~GE~~~l~~l~-----~v~~~~~g~~~~~~~--~ 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF--IKGAWSTGERNLLEFGG-----GVEFHVMGTGFTWET--Q 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE--ecCCCccCHHHHHhcCC-----CcEEEECCCCCcccC--C
Confidence 457788999999999999999988776655 5666531 11122 1222 22222 122221 11100000 0
Q ss_pred CCeEEEEeh-hHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC--cEEEEeccCCCCChhHHHH
Q 001912 290 FPRVVVISY-TMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK--RIVLLSGTPSLSRPYDIFH 366 (997)
Q Consensus 290 ~~~VvItTy-~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~--~~llLTGTPi~n~~~El~~ 366 (997)
...--+... +.+....+.+....||+||+||.-..-+..--. ...+..+....+ --+.|||-=. +.+|..
T Consensus 92 ~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~----~eevi~~L~~rp~~~evVlTGR~~---p~~Lie 164 (191)
T PRK05986 92 DRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLD----VEEVLEALNARPGMQHVVITGRGA---PRELIE 164 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCcc----HHHHHHHHHcCCCCCEEEEECCCC---CHHHHH
Confidence 000000000 112222344556789999999998765433222 334444443222 2599999844 445544
Q ss_pred HHHhh
Q 001912 367 QINML 371 (997)
Q Consensus 367 ll~~l 371 (997)
+.+++
T Consensus 165 ~ADlV 169 (191)
T PRK05986 165 AADLV 169 (191)
T ss_pred hCchh
Confidence 44433
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.85 E-value=4.5 Score=47.54 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
..+++.-..|+|||.++..++.++...| ++++|+-.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3567888999999999999988877655 56666544
No 281
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=85.80 E-value=1.5 Score=46.01 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=46.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
+.|++-++|.|||-.+.+++..++.. ..++.+... +.+++ +.-|||=..
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~-------------~~ke~vLEL-------------NASde-----RGIDvVRn~ 98 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGD-------------SYKEAVLEL-------------NASDE-----RGIDVVRNK 98 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhCh-------------hhhhHhhhc-------------cCccc-----cccHHHHHH
Confidence 78999999999999999999887542 122211111 11111 123344333
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccc
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
..+|....-.+...+...||+|||..+-
T Consensus 99 IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 99 IKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHHhhccCCCCceeEEEeeccchhh
Confidence 3334333333444678999999999873
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=85.77 E-value=9.7 Score=40.72 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
|.-+++.-+.|+|||.-+..++..... ..++++|.=..-..+..+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC
Confidence 445778899999999999998776544 55788887665555666665554
No 283
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.73 E-value=5.1 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+.||.-+.|+|||..+-+++....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988876543
No 284
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=85.39 E-value=11 Score=42.40 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=73.8
Q ss_pred hccChhhHHHHHHHHHh---cCC---CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCC
Q 001912 198 LDVILPFQLEGVRFGLR---RGG---RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLP 271 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~---~~g---~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~ 271 (997)
...+||+|....+.+.. +|. ..|+..+.|+||+..|.+++..++-.++. -|+.--.-+| +.....+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~--~~~~c~~c~~------~~~g~HP 73 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPD--PAAAQRTRQL------IAAGTHP 73 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCC--CCCcchHHHH------HhcCCCC
Confidence 35689999999887543 222 47899999999999999999887644321 1111001111 1112222
Q ss_pred ceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhh----ccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc-
Q 001912 272 ADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV- 346 (997)
Q Consensus 272 ~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~----~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~- 346 (997)
+++++....+.... . .-.-++-+.++...+.+.. .++.++|||+|+.+. .....++++.....
T Consensus 74 -D~~~i~~~p~~~~~---k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-------~~AaNaLLKtLEEPp 141 (319)
T PRK08769 74 -DLQLVSFIPNRTGD---K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-------RAACNALLKTLEEPS 141 (319)
T ss_pred -CEEEEecCCCcccc---c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-------HHHHHHHHHHhhCCC
Confidence 23333110000000 0 0012345555555444332 368999999999993 34456666665432
Q ss_pred -CcEEEEecc
Q 001912 347 -KRIVLLSGT 355 (997)
Q Consensus 347 -~~~llLTGT 355 (997)
.-+++|++.
T Consensus 142 ~~~~fiL~~~ 151 (319)
T PRK08769 142 PGRYLWLISA 151 (319)
T ss_pred CCCeEEEEEC
Confidence 223555543
No 285
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.32 E-value=5 Score=49.10 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+..+..++..|. ..||.-+.|+|||..|..++..+.-
T Consensus 33 v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 33 VRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 333444454432 4788999999999999999987653
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.13 E-value=5.2 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..|+.-+.|+|||..|-+++..+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 358999999999999999988764
No 287
>CHL00195 ycf46 Ycf46; Provisional
Probab=85.07 E-value=3.2 Score=49.45 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 211 ~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
+.+....++||.-+.|+|||..|=+++..+ ..|++.+-+.
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~~~l~~~ 293 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPLLRLDVG 293 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEEEEEhH
Confidence 344445679999999999999998888764 3456655543
No 288
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=7.1 Score=42.51 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=67.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
+.||--+.|+||+..|-|++... ...+.-|..+-|+..|.-|-++...
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA--nSTFFSvSSSDLvSKWmGESEkLVk------------------------------ 215 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVSKWMGESEKLVK------------------------------ 215 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc--CCceEEeehHHHHHHHhccHHHHHH------------------------------
Confidence 46888999999999999988763 2445556666899999888666432
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh--------hcCcEEEEeccCC
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA--------KVKRIVLLSGTPS 357 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~--------~~~~~llLTGTPi 357 (997)
++.+.-...+..++.|||...+-.+.....+...+.+..-+. ....+|.|-||-+
T Consensus 216 -----nLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 216 -----NLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred -----HHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 122222346789999999998865554444444444432111 2345677777754
No 289
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.83 E-value=5.2 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~ 242 (997)
.||.-+.|+|||..|-+++..+.-
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccC
Confidence 489999999999999999987643
No 290
>PRK08116 hypothetical protein; Validated
Probab=84.73 E-value=6 Score=43.39 Aligned_cols=43 Identities=28% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSW 258 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW 258 (997)
+.+++|.-++|+|||..|.+++..+...+ +++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 33588999999999999999999887655 45444433444433
No 291
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=84.68 E-value=15 Score=39.41 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=53.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh-------------hCCcEEEEeCc---chHHHHHHHHHHHCC-CCCCceEEEEccCC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI-------------SAGSILVVCPA---ILRLSWAEELERWLP-FCLPADIHLVFGHR 281 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~-------------~~gp~LIV~P~---sL~~qW~~Ei~k~~p-~~~~~~i~~~~g~~ 281 (997)
++|+-+.|+|||..++-++.... ..+++|+++-- ..+.+-...+...+. ........+..+..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~~ 83 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGRI 83 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccCC
Confidence 57888999999999988776432 34578888844 333333333333321 00011122211111
Q ss_pred CCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccc
Q 001912 282 NNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 282 ~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~i 324 (997)
.......... +.....+....+.+...++++||+|.--.+
T Consensus 84 -~~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 84 -QPISIAREGR--IIVVPEFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred -CceecccCCc--ccccHHHHHHHHHHHhcCCCEEEECChHHh
Confidence 1000000000 223445555555555578999999975544
No 292
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=6.7 Score=44.33 Aligned_cols=44 Identities=34% Similarity=0.497 Sum_probs=33.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEE-EeCcchHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILV-VCPAILRLSWAEELER 264 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LI-V~P~sL~~qW~~Ei~k 264 (997)
++|+.-+.|+|||+.|=|++.. .+.+.+ |.-+.|...|.-|-++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATE---c~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATE---CGTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHh---hcCeEEEechhhhhhhhccchHH
Confidence 5789999999999999999875 455444 4444777778776555
No 293
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=6.4 Score=44.30 Aligned_cols=64 Identities=30% Similarity=0.311 Sum_probs=42.5
Q ss_pred cChhhHHHHHH---HHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHH
Q 001912 200 VILPFQLEGVR---FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 200 ~L~pyQ~~gV~---~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
.+.|-|.-.+. -+++...|++|-.+.|+|||..|-|++... ..+++=|-=..+...|.-|-.+.
T Consensus 108 VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea--ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 108 VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA--GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc--CCCcceeeccccchhhHHHHHHH
Confidence 34555555543 144455688999999999999999998752 33444444456666777776664
No 294
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=84.41 E-value=3.4 Score=45.29 Aligned_cols=39 Identities=28% Similarity=0.110 Sum_probs=29.0
Q ss_pred hHHHHHHHHH---hc--CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 204 FQLEGVRFGL---RR--GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 204 yQ~~gV~~~l---~~--~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+|...|+-+. .+ ....++--+.|+|||-+|++++..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 6777776542 22 236788899999999999999988643
No 295
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.35 E-value=4.3 Score=54.49 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=73.5
Q ss_pred hhhccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHH---hh--CCcEEEEeCcchHHHHHHH-------H
Q 001912 196 SLLDVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACF---IS--AGSILVVCPAILRLSWAEE-------L 262 (997)
Q Consensus 196 ~l~~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~---~~--~gp~LIV~P~sL~~qW~~E-------i 262 (997)
.+...|-+-|+++|..++.. ++-++|--..|+|||.+.-+++..+ .+ ...++.++|+.-...=..+ +
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TI 910 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTL 910 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhH
Confidence 34457899999999988753 3456778889999999865554432 22 2357889998543322222 1
Q ss_pred HHHCCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHH
Q 001912 263 ERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV 342 (997)
Q Consensus 263 ~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l 342 (997)
.+|+... . .... ...-.....++||||||-++- ......++.+
T Consensus 911 asfL~~~----------------------~-------~~~~-~~~~~~~~~~llIVDEASMV~-------~~~m~~ll~~ 953 (1623)
T PRK14712 911 ASFLHDT----------------------Q-------LQQR-SGETPDFSNTLFLLDESSMVG-------NTDMARAYAL 953 (1623)
T ss_pred HHHhccc----------------------c-------chhh-cccCCCCCCcEEEEEcccccc-------HHHHHHHHHh
Confidence 1221100 0 0000 000001345899999999983 3334455555
Q ss_pred HhhcCcEEEEeccCCCC
Q 001912 343 AAKVKRIVLLSGTPSLS 359 (997)
Q Consensus 343 ~~~~~~~llLTGTPi~n 359 (997)
.....-+++|.|=+-|.
T Consensus 954 ~~~~garvVLVGD~~QL 970 (1623)
T PRK14712 954 IAAGGGRAVASGDTDQL 970 (1623)
T ss_pred hhhCCCEEEEEcchhhc
Confidence 54444578999987544
No 296
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.32 E-value=5.2 Score=42.55 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=26.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
+...+|.-+.|+|||..+.+++......+ ++++|.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45688999999999999998887664444 444443
No 297
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=84.30 E-value=6.3 Score=54.93 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=79.0
Q ss_pred cChhhHHHHHHHHHhcC-CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHH-HHHHH-------HHHHCCCC
Q 001912 200 VILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRL-SWAEE-------LERWLPFC 269 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~-g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~-qW~~E-------i~k~~p~~ 269 (997)
.|-+-|+++|..++..+ .-.||--..|+|||-..-++...+...| .+++++|+.-.. ...++ +.+|+..+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti~~~l~~l 508 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVKNL 508 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhHHHHHHhh
Confidence 67889999999887643 3466777899999988877776655544 689999995433 34433 22232110
Q ss_pred CCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 270 LPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 270 ~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
. ... ...|...+.. ....-..-++||||||.++ +......++.......-+
T Consensus 509 ~-------------------~~~-~~~tv~~fl~--~~~~l~~~~vlIVDEAsMl-------~~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 509 F-------------------NDD-QDHTVQGLLD--KSSPFSNKDIFVVDEANKL-------SNNELLKLIDKAEQHNSK 559 (1960)
T ss_pred c-------------------ccc-cchhHHHhhc--ccCCCCCCCEEEEECCCCC-------CHHHHHHHHHHHhhcCCE
Confidence 0 000 0111111110 0000135689999999998 244566666655445567
Q ss_pred EEEeccCCCCC
Q 001912 350 VLLSGTPSLSR 360 (997)
Q Consensus 350 llLTGTPi~n~ 360 (997)
|+|-|=+-|..
T Consensus 560 vVlvGD~~QL~ 570 (1960)
T TIGR02760 560 LILLNDSAQRQ 570 (1960)
T ss_pred EEEEcChhhcC
Confidence 88888776544
No 298
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=84.25 E-value=18 Score=41.64 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=64.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-----------cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCccc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-----------SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVH 286 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-----------p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~ 286 (997)
..|+.-+.|+|||..|.+++..++-.. ..|.+|+..-.-.|.. ....++...+.....+....
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~------~~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA------AGAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH------ccCCCCeEEEeccccccccc
Confidence 578999999999999999999886322 1344555432223321 12223223332111110000
Q ss_pred ccCCCeEEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC---cEEEEeccC
Q 001912 287 LTRFPRVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK---RIVLLSGTP 356 (997)
Q Consensus 287 ~~~~~~VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~---~~llLTGTP 356 (997)
. ... ++-+.++.....+. ..++.+|||||+|++- .....++.+.....+ ..|++|-.|
T Consensus 117 ~--~~~---I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 117 L--RTV---ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------ANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred c--ccc---ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------HHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 0 011 24456665554433 2478999999999982 344556666665432 234445444
No 299
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=84.16 E-value=3.1 Score=47.22 Aligned_cols=47 Identities=19% Similarity=0.032 Sum_probs=35.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
..+++|--+.|.|||++|=+++..+ .-++++|-...|...|.-|-.+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el--g~~~i~vsa~eL~sk~vGEsEk 194 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM--GIEPIVMSAGELESENAGEPGK 194 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc--CCCeEEEEHHHhhcCcCCcHHH
Confidence 4467788899999999999998875 3356666666787777666444
No 300
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.12 E-value=6.2 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..+.||.-+.|.|||..+-+++.....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999888876543
No 301
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=8.6 Score=43.17 Aligned_cols=94 Identities=21% Similarity=0.247 Sum_probs=56.8
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
.-..|+||--+.|+|||+.|=|+|..- ...++=|+=+.|+..+.-|=.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T--~AtFIrvvgSElVqKYiGEGaR----------------------------- 231 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQT--DATFIRVVGSELVQKYIGEGAR----------------------------- 231 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc--CceEEEeccHHHHHHHhccchH-----------------------------
Confidence 446689999999999999999998752 3345555555555433222111
Q ss_pred EEEehhHHHHHHHhhhhccccEEEecccccccc----CCCCCcHHHHHHHHHHHh
Q 001912 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRC----SKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 294 vItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN----~~~~~~s~~~~al~~l~~ 344 (997)
+++.....-....+..|.+||...|.. ..++.+...-+.++.++.
T Consensus 232 ------lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 232 ------LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred ------HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 111122222346789999999999864 223344455556666654
No 302
>PRK04195 replication factor C large subunit; Provisional
Probab=83.76 E-value=8.6 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~ 240 (997)
..+||.-+.|+|||..|-+++..+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999888765
No 303
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=83.74 E-value=13 Score=39.59 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
|.-.+|+-+.|+|||..+..++..... ..++++|.-.....+..+....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHH
Confidence 445778999999999999887765444 4477787765444554444333
No 304
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=83.71 E-value=1.1 Score=56.09 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=65.7
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHH---HhhCCcEEEEeCc-chHH----HHHHHHHHHCCCCCCceEEEEccCCCCccc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAAC---FISAGSILVVCPA-ILRL----SWAEELERWLPFCLPADIHLVFGHRNNPVH 286 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~---~~~~gp~LIV~P~-sL~~----qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~ 286 (997)
-..+.++.+++|.|||+.+=..+.. ....+++.+|+|. +|+. .|..-+.. +.. .+.-..|.......
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~---k~ie~tgd~~pd~~ 1016 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGI---KVIELTGDVTPDVK 1016 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCc---eeEeccCccCCChh
Confidence 3457799999999999988543332 2345679999998 5554 36543322 211 11111221111111
Q ss_pred ccCCCeEEEEehhHHHHHHHhhhh----ccccEEEecccccccc
Q 001912 287 LTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRC 326 (997)
Q Consensus 287 ~~~~~~VvItTy~~l~~~~~~l~~----~~~~~VIvDEaH~iKN 326 (997)
.....+++|||++........+.. ..+..+|+||.|.++.
T Consensus 1017 ~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1017 AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred heecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 223678999999988765554433 3567899999999864
No 305
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.65 E-value=5.5 Score=50.41 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=47.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..+++|.-+.|+|||..|-+++... ..+++.|-++.++..|..|-.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~--~~~fi~v~~~~l~~~~vGese~------------------------------- 533 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES--GANFIAVRGPEILSKWVGESEK------------------------------- 533 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc--CCCEEEEehHHHhhcccCcHHH-------------------------------
Confidence 4468999999999999999988764 3466666665555444222111
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
.+.............+|++||++.+-
T Consensus 534 ----~i~~~f~~A~~~~p~iifiDEid~l~ 559 (733)
T TIGR01243 534 ----AIREIFRKARQAAPAIIFFDEIDAIA 559 (733)
T ss_pred ----HHHHHHHHHHhcCCEEEEEEChhhhh
Confidence 12222223334567899999999884
No 306
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.60 E-value=10 Score=44.89 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=25.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
..+|.-+.|+|||-.+-+++..+...+ +++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~ 176 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR 176 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee
Confidence 477888999999999999988776544 444444
No 307
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.56 E-value=2.5 Score=50.44 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=22.6
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...++||.-++|+|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 355789999999999999988887653
No 308
>PRK04328 hypothetical protein; Provisional
Probab=83.48 E-value=6.1 Score=42.85 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCcchHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
|.-.++.-+.|+|||..++-++.... ...++++|.=..-..+-.+.+..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH
Confidence 44567899999999999998877654 44577777744333333333333
No 309
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.44 E-value=7 Score=49.66 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 205 QLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 205 Q~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
-++.+..++..+. ..||.-+.|+|||..|..++..+.
T Consensus 23 v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344545555432 368999999999999999988765
No 310
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.18 E-value=3 Score=46.30 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-----cEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-----SILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
|-+-|.++|.+ . .+.+++--..|+|||.+.+.-+.+++..+ .+|+|+++ .........+...++.......
T Consensus 1 l~~eQ~~~i~~-~--~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~ 77 (315)
T PF00580_consen 1 LTDEQRRIIRS-T--EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS 77 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT
T ss_pred CCHHHHHHHhC-C--CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc
Confidence 45679999988 2 45566666799999999988776665543 49999999 4455555555554321100000
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHH-H-Hhhh--hccccEEEecccc
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRL-R-KSMI--EQDWALLIVDESH 322 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~-~-~~l~--~~~~~~VIvDEaH 322 (997)
....-.........+.|.|++.+... . .... ......-|+|+..
T Consensus 78 ----~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 78 ----DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----ccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000000011245788888887652 1 1111 2334566777766
No 311
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.17 E-value=15 Score=46.31 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHh----c--CCCeE-EEcCCCchHHHHHHHHHHHHh
Q 001912 202 LPFQLEGVRFGLR----R--GGRCL-IADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 202 ~pyQ~~gV~~~l~----~--~g~~I-LaDemGLGKTlqaial~~~~~ 241 (997)
|+-|.+.+...+. . .+++| |.-.+|+|||.++-.++..+.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5666666655332 1 22454 899999999999998877653
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.09 E-value=8.4 Score=41.21 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=34.0
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELE 263 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~ 263 (997)
..|.-.+|.-+.|+|||..++.++..... ..+++.|+......+-.+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 33556788999999999999888776644 457888886543333333333
No 313
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=82.99 E-value=7.1 Score=45.64 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=25.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA---GSILVVC 250 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~ 250 (997)
..+|.-+.|+|||..+-+++..+... ..++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46789999999999999988877654 3455553
No 314
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.77 E-value=17 Score=43.50 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=61.8
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCc----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL 287 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~ 287 (997)
.|+...|.-..|.|||..+..++..+... .++.+|.-. .-..||...... + ...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i----L-gv~v~------------ 411 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ----L-GIAVH------------ 411 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc----c-CceeE------------
Confidence 45566677889999999998887765442 356555422 223444322111 0 00010
Q ss_pred cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHH--HhhcCcEEEEeccCCCCChhHHH
Q 001912 288 TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV--AAKVKRIVLLSGTPSLSRPYDIF 365 (997)
Q Consensus 288 ~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l--~~~~~~~llLTGTPi~n~~~El~ 365 (997)
...+...+......+ .++++||||.+-+... +......+..+ .......+++++|+-...+.++.
T Consensus 412 ------~a~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~-----D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 412 ------EADSAESLLDLLERL--RDYKLVLIDTAGMGQR-----DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ------ecCcHHHHHHHHHHh--ccCCEEEecCCCcchh-----hHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHH
Confidence 011122333333333 4689999999976531 12212222111 12345678888887544444433
No 315
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.73 E-value=4.7 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.+.||.-|.|.|||..+=+++..+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999988887653
No 316
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.70 E-value=6.5 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+.||.-+.|.|||..+-+++....
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999988887654
No 317
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=82.45 E-value=8.8 Score=45.14 Aligned_cols=38 Identities=29% Similarity=0.243 Sum_probs=27.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~ 255 (997)
+.++||.-+.|+|||..|=+++... ..+++-|..+.+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el--~~~fi~V~~seL~ 254 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET--SATFLRVVGSELI 254 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh--CCCEEEEecchhh
Confidence 4578999999999999999888754 3345545444443
No 318
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.32 E-value=6.7 Score=46.54 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=29.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC--C-cEEEEeCcchHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA--G-SILVVCPAILRLSWAEE 261 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~--g-p~LIV~P~sL~~qW~~E 261 (997)
.++|.-+.|+|||..+-+++..+... + .++.|....+...+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 47889999999999999998877664 2 24444433444444333
No 319
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=82.09 E-value=4.3 Score=42.93 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=19.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+|+.-+.|+|||-.|-.++..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCccchhHHHHHHHhcc
Confidence 58999999999999988777764
No 320
>CHL00176 ftsH cell division protein; Validated
Probab=82.06 E-value=9 Score=47.32 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
..++||.-+.|+|||..|=+++... ..|++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~--~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA--EVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCCeeecc
Confidence 4468999999999999999887753 34544443
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=81.89 E-value=8.6 Score=42.05 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=34.8
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCcchHHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~sL~~qW~~Ei 262 (997)
+..|.-++|+-.+|.|||..++.++..+.. ..+++++.-..-..+....+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHH
Confidence 344566789999999999999988776543 45788887654444444333
No 322
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=81.84 E-value=3.6 Score=49.25 Aligned_cols=119 Identities=22% Similarity=0.264 Sum_probs=67.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccc---c
Q 001912 220 LIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL---T 288 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~---~ 288 (997)
+.--+=-=|||...++++..++. +=.+..|+-- .+...-...+.+|+|.... ++. ++..... .
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~----k~~tI~~s~pg 279 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN----KDNVISIDHRG 279 (668)
T ss_pred EEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee----cCcEEEEecCC
Confidence 33345667999988887776654 3357788765 3344456668899985432 211 1110000 0
Q ss_pred CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC-cEEEEecc
Q 001912 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK-RIVLLSGT 355 (997)
Q Consensus 289 ~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~-~~llLTGT 355 (997)
...-++..| ....+.+....|++++|||||.++ ......++.+..... ..+..|-|
T Consensus 280 ~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~-------~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 280 AKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIK-------KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred Ccceeeehh----hccCccccCCCCCEEEEehhhccC-------HHHHHHhhhhhcccCceEEEEeCC
Confidence 011122222 012345667899999999999996 344667777654443 34555544
No 323
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.83 E-value=13 Score=44.90 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 204 FQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 204 yQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+-...+..++..+. ..|+.-+.|+|||..|-.++..+.
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33334445555433 367899999999999999998765
No 324
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=81.78 E-value=20 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..||.-+.|+|||..|.+++..+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 468999999999999999988764
No 325
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.77 E-value=13 Score=45.42 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHHHhcC---CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRG---GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~---g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+..+..++..+ ...|+.-+.|+|||..|..++..+.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 33444445433 2467899999999999999988764
No 326
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.65 E-value=7.1 Score=46.75 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHh----cCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEE
Q 001912 203 PFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 203 pyQ~~gV~~~l~----~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
+--..++.-++. +|.-.+|.-++|.|||..++-++......| ++++|.--.-..|-...+..+--.+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~-------- 317 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDF-------- 317 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCCh--------
Confidence 334455555543 344578999999999999999888776655 8899987777777776666642111
Q ss_pred ccCCCCcccccCCCeEEEEe--------hhHHHHHHHhhhhccccEEEecccccccc
Q 001912 278 FGHRNNPVHLTRFPRVVVIS--------YTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItT--------y~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
..+.....+.|.. -+.+......+...+.++||||=-..+..
T Consensus 318 -------~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 318 -------EEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred -------HHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 0000111222222 34455556667677899999998887643
No 327
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=81.61 E-value=4.8 Score=50.04 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred cChhhHHHHHHHHHh---cC-CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 200 VILPFQLEGVRFGLR---RG-GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~---~~-g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
.|.+.|..++.-+.. .+ ++.++.--.|+|||+.+.+++.. ...|+|||+|. ....+|.+++..|+|.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~--~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIAR--LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 577889888876543 23 24567778999999998776654 25789999999 7888999999999985
No 328
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.17 E-value=8.9 Score=45.97 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHhcC---CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 208 GVRFGLRRG---GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 208 gV~~~l~~~---g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.+.+++..+ +..||.-+.|+|||..|-+++..+.
T Consensus 32 ~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 32 VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444433 3588999999999999999988764
No 329
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.76 E-value=17 Score=43.29 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..|+.-+.|+|||-.|..++..+.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHc
Confidence 578999999999999998887653
No 330
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=80.57 E-value=4.7 Score=43.87 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHH
Q 001912 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELE 263 (997)
Q Consensus 204 yQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~ 263 (997)
-....+.|.- ++.+.+|--.+|.|||..|+|++..+...| +++++.=+.++.+++..+.
T Consensus 94 ~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 94 DLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 3344444544 677889999999999999999998887655 5666655577777666543
No 331
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=80.40 E-value=9.6 Score=43.82 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=26.6
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcch
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL 254 (997)
...+++|.-+.|+|||..|-+++..+ ..+++-+....+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l--~~~~~~v~~~~l 192 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET--NATFIRVVGSEL 192 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC--CCCEEecchHHH
Confidence 34578999999999999999888754 234444443333
No 332
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.26 E-value=15 Score=43.64 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+..++..+. ..|+.-+.|+|||..|-+++..+.
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444445555432 358999999999999999988764
No 333
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.25 E-value=8.3 Score=48.30 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHH----HHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEF----ISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~----L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
.|.+++|.+.....+..+.+. +...|+++..++|+++..+|..++.... .+++.|++.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~-~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA-SGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh-CCCCCEEEchHHHhcccchhcccceE
Confidence 477899999988776655444 4455899999999999999999999988 66788866665556666777777777
Q ss_pred EEec
Q 001912 605 VFLE 608 (997)
Q Consensus 605 I~~D 608 (997)
|+=+
T Consensus 388 VIDE 391 (681)
T PRK10917 388 IIDE 391 (681)
T ss_pred EEec
Confidence 7644
No 334
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.90 E-value=11 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~ 242 (997)
.|+.-..|+|||..|.+++..+.-
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999999999887753
No 335
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.64 E-value=11 Score=45.50 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+..++..+. ..|+.-+.|+|||..|-.++..+.
T Consensus 25 ~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 25 VRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444444332 358999999999999999988764
No 336
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=79.60 E-value=10 Score=43.25 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHhcCC--CeEEEcCCCchHHHHHHHHHHH
Q 001912 211 FGLRRGG--RCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 211 ~~l~~~g--~~ILaDemGLGKTlqaial~~~ 239 (997)
.|+..+. ..||.-+.|.|||-.|-.++..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 4555333 6899999999999998877765
No 337
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=79.58 E-value=16 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..|+.-+.|.|||..|.+++..+.-
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4789999999999999999887543
No 338
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=79.52 E-value=4.1 Score=47.14 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=30.9
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHH-HhhCCcEEEEeCcchHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAAC-FISAGSILVVCPAILRLSW 258 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~-~~~~gp~LIV~P~sL~~qW 258 (997)
+.++.++|+--+.|+|||-.+.++..+ ....| ..+.++.|+.+-
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG--~f~T~a~Lf~~L 250 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG--GTITVAKLFYNI 250 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC--CcCcHHHHHHHH
Confidence 456788999999999999988887665 34455 444555555444
No 339
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.20 E-value=17 Score=41.79 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~ 241 (997)
.|+.-+.|+|||..|-+++..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999988764
No 340
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=79.14 E-value=2.5 Score=43.00 Aligned_cols=141 Identities=16% Similarity=0.275 Sum_probs=66.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHH-HHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSW-AEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW-~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
|-..+--..|-|||-.|++++......| +++||== +...| ..|..-+-+ + ...+... + ..- ........--
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF--lKg~~~~GE~~~l~~-~-~~~~~~~-g-~g~-~~~~~~~~~~ 78 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQF--IKGAWPNGERAAFEP-H-GVEFQVM-G-TGF-TWETQNREAD 78 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE--ecCCcccChHHHHHh-c-CcEEEEC-C-CCC-eecCCCcHHH
Confidence 3455677799999999999988776655 5665511 11112 122221111 1 1112111 1 100 0000000000
Q ss_pred EE-ehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc--CcEEEEeccCCCCChhHHHHHHHhh
Q 001912 295 VI-SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV--KRIVLLSGTPSLSRPYDIFHQINML 371 (997)
Q Consensus 295 It-Ty~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~--~~~llLTGTPi~n~~~El~~ll~~l 371 (997)
.. -.+.+....+.+....+|+||+||.-..-+..--. ...+..+.... .--+.|||.=. +.+|..+.+++
T Consensus 79 ~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~----~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 79 TAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLD----VEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcC----HHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 00 00112223344556789999999998765432212 22344443322 22599999844 45555544433
No 341
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=79.00 E-value=16 Score=43.25 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC---cEEEEeC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG---SILVVCP 251 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g---p~LIV~P 251 (997)
..+|.-+.|+|||..+-+++..+...+ .++.|..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 478999999999999999888776543 3555543
No 342
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=78.76 E-value=10 Score=47.93 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=67.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C----cEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G----SILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
.|-|-|+++|.+ ..|.+++....|+|||.+.+.-+.++... + .+|+|+-+ .......+-+.+.++..
T Consensus 4 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 4 GLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred ccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 578999999964 24567777789999999999888877753 2 48999998 56666666676654310
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHH-HH-hhh--hccccEEEeccccc
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RK-SMI--EQDWALLIVDESHH 323 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~-~~-~l~--~~~~~~VIvDEaH~ 323 (997)
...+.|.|+..+... .. ... ....+.-|+|+...
T Consensus 77 ----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred ----------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 124678999887642 21 111 12234567787643
No 343
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=78.60 E-value=8.8 Score=52.38 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=42.9
Q ss_pred hhhccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHh---h--CCcEEEEeCcchH
Q 001912 196 SLLDVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFI---S--AGSILVVCPAILR 255 (997)
Q Consensus 196 ~l~~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~---~--~gp~LIV~P~sL~ 255 (997)
.+...|-+-|+++|..++.. +.-++|--..|+|||.+.-+++..+. . ...++.++|+.-.
T Consensus 963 ~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 963 ELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred HhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 33456889999999988864 34567788899999998766655432 1 2357888999533
No 344
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=78.47 E-value=19 Score=40.65 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHH---Hhc---CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceE
Q 001912 201 ILPFQLEGVRFG---LRR---GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 201 L~pyQ~~gV~~~---l~~---~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
+||+|...-+.+ +.+ +...|+.-+.|+||+..|.+++..+.=..+.- .-|-... ...+.+.....++ +
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C----~sC~~~~~g~HPD-~ 76 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQC----HSCHLFQAGNHPD-F 76 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCC----HHHHHHhcCCCCC-E
Confidence 467776666543 333 23567899999999999999998775332200 0011111 1112222222232 3
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
+.+....+. -..-+.++...+.+. ..++.++|||+||++. .....++++....
T Consensus 77 ~~i~p~~~~-----------~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~-------~~AaNaLLKtLEE 133 (325)
T PRK06871 77 HILEPIDNK-----------DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT-------EAAANALLKTLEE 133 (325)
T ss_pred EEEccccCC-----------CCCHHHHHHHHHHHhhccccCCceEEEEechhhhC-------HHHHHHHHHHhcC
Confidence 333211100 023445554444332 2578999999999983 3445666666543
No 345
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=78.35 E-value=13 Score=39.29 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=36.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
.-.+|+-+.|+|||..++-++..... ..++++|.-..-..+-.+.+..+
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc
Confidence 34678889999999999988776544 45889998876666666666554
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=78.23 E-value=30 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=25.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P 251 (997)
..+.-..|.|||.++..++..+... +.++++.-
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4466699999999999998887765 46777653
No 347
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.08 E-value=10 Score=45.85 Aligned_cols=122 Identities=25% Similarity=0.287 Sum_probs=70.8
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
....|+|+--+.|.|||+.|=+++.. .+.-+|-++. .|...|.-|-++.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne---~~~nFlsvkgpEL~sk~vGeSEr~i-------------------------- 516 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE---AGMNFLSVKGPELFSKYVGESERAI-------------------------- 516 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh---hcCCeeeccCHHHHHHhcCchHHHH--------------------------
Confidence 34568999999999999999998875 3333444444 56555654444321
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHH-HHHh------hcCcEEEEeccCCCCChhHHH
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVAA------KVKRIVLLSGTPSLSRPYDIF 365 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~~------~~~~~llLTGTPi~n~~~El~ 365 (997)
+...+.-......++.+||...+-...+...+.....+. .+.. ..+.++.+-|| |++..+=
T Consensus 517 ---------r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT---NRpd~ID 584 (693)
T KOG0730|consen 517 ---------REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT---NRPDMID 584 (693)
T ss_pred ---------HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc---CChhhcC
Confidence 111222223456889999999985433222222222222 2221 24678888888 6655443
Q ss_pred HHHHhhccCCccc
Q 001912 366 HQINMLWPGLLGK 378 (997)
Q Consensus 366 ~ll~~l~p~~~~~ 378 (997)
. .+++||.|..
T Consensus 585 ~--ALlRPGRlD~ 595 (693)
T KOG0730|consen 585 P--ALLRPGRLDR 595 (693)
T ss_pred H--HHcCCcccce
Confidence 2 2467888754
No 348
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.96 E-value=24 Score=42.48 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=21.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
.|+.-+.|+|||..|.+++..+.-.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccC
Confidence 38999999999999999988765433
No 349
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=77.91 E-value=5.3 Score=41.10 Aligned_cols=105 Identities=23% Similarity=0.252 Sum_probs=54.3
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-----------CCcEEEEeCcchHHHHHHHHHHHCCCCCCc-eEEEEccCCC
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-----------AGSILVVCPAILRLSWAEELERWLPFCLPA-DIHLVFGHRN 282 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-----------~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~-~i~~~~g~~~ 282 (997)
+|.-++++-+.|.|||..++.++..+.. .+++|+|..-.-..++.+-+.......... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~---- 106 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVD---- 106 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHH----
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEee----
Confidence 3555788999999999999988776653 347888888766666666666554321000 000000
Q ss_pred CcccccCCCeEEEE--------ehhHHHHHHHhhhh-ccccEEEeccccccccC
Q 001912 283 NPVHLTRFPRVVVI--------SYTMLHRLRKSMIE-QDWALLIVDESHHVRCS 327 (997)
Q Consensus 283 ~~~~~~~~~~VvIt--------Ty~~l~~~~~~l~~-~~~~~VIvDEaH~iKN~ 327 (997)
......+-+. ....+....+.+.. .+.++||||=...+...
T Consensus 107 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 107 ----LSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ----H--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ----ccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0000011111 22234445555555 67999999998888765
No 350
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.69 E-value=8.4 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+||.-+.|+|||..|-+++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999998887643
No 351
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=77.52 E-value=10 Score=46.52 Aligned_cols=62 Identities=27% Similarity=0.260 Sum_probs=45.2
Q ss_pred HHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHh---hCCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 205 QLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI---SAGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 205 Q~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~---~~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
|.+-+.+ .+..++.+++-..+|+|||+..+.-+..+. ...++||++|+ .|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4444444 345566677778999999999887654332 35789999999 89999988877654
No 352
>PHA00350 putative assembly protein
Probab=77.28 E-value=12 Score=43.31 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred EEEcCCCchHHHHHHH-HHHHHhhCCcEE
Q 001912 220 LIADEMGLGKTLQAIA-IAACFISAGSIL 247 (997)
Q Consensus 220 ILaDemGLGKTlqaia-l~~~~~~~gp~L 247 (997)
|+---+|+|||+.|+. .+...++.|+.+
T Consensus 5 l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred EEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 3444599999999997 355556677743
No 353
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=77.19 E-value=6.1 Score=39.65 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=60.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe-EEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR-VVV 295 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~-VvI 295 (997)
..+--..|.|||-.|++++......| +++||==. .-...=...+.+-+|.. .+.. .+....... .... -.-
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v---~~~~-~g~~~~~~~--~~~~~~~~ 78 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNI---EIHR-MGRGFFWTT--ENDEEDIA 78 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCc---EEEE-CCCCCccCC--CChHHHHH
Confidence 45666789999999999887766655 46553211 11001112222323321 1211 121111000 0000 000
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc--CcEEEEeccCCCC
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV--KRIVLLSGTPSLS 359 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~--~~~llLTGTPi~n 359 (997)
...+.+......+....+|+||+||.=..-+..--. ...+..+.... ..-+.|||-=.+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~----~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLD----VEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCC----HHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 001111122334445789999999998874432222 23344443322 2259999975443
No 354
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.18 E-value=23 Score=41.23 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..|+.-+.|+|||..|.+++..+.-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999887643
No 355
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.97 E-value=25 Score=42.21 Aligned_cols=48 Identities=33% Similarity=0.333 Sum_probs=32.8
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEeCcchHHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILRLSWAEELER 264 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~P~sL~~qW~~Ei~k 264 (997)
.-..|+||+-+.|.|||+.|=|++.. .|- ++=|==.-|+..|.-|-++
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANE---ag~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANE---AGANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhh---ccCceEeecCHHHHHHHhhhHHH
Confidence 34668999999999999999998875 232 2323233666666655444
No 356
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.85 E-value=8.1 Score=42.73 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPA 252 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~ 252 (997)
++..+|.-.+|+|||.++..++.++... .++.+|.-.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4456688899999999999998877643 356666543
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.85 E-value=35 Score=39.24 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc----chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA----ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~ 290 (997)
+.-.++.-+.|.|||-++..++..+...+ ++.+|+-- .-+.||..-... .. +.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~----lg---vp--------------- 263 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADK----LD---VE--------------- 263 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhc----CC---CC---------------
Confidence 33456788899999999998887776555 56666543 346677553222 10 00
Q ss_pred CeEEEEehhHHHHHHHhhh-hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc-CcEEEEeccCCCCChhHHHHHH
Q 001912 291 PRVVVISYTMLHRLRKSMI-EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV-KRIVLLSGTPSLSRPYDIFHQI 368 (997)
Q Consensus 291 ~~VvItTy~~l~~~~~~l~-~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~-~~~llLTGTPi~n~~~El~~ll 368 (997)
-.+..+.+.+......+. ..+.++||||=+=+.- ........+..+.... +..++|...+ .....|+...+
T Consensus 264 -v~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~-----~d~~~l~EL~~l~~~~~p~~~~LVLsa-g~~~~d~~~i~ 336 (407)
T PRK12726 264 -LIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNY-----LAEESVSEISAYTDVVHPDLTCFTFSS-GMKSADVMTIL 336 (407)
T ss_pred -EEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc-----cCHHHHHHHHHHhhccCCceEEEECCC-cccHHHHHHHH
Confidence 012233444433333332 1468999999986642 2234444444443222 2333444333 23444444443
No 358
>PF12137 RapA_C: RNA polymerase recycling family C-terminal; InterPro: IPR022737 This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with PF00271 from PFAM, PF00176 from PFAM. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3DMQ_A.
Probab=76.51 E-value=0.58 Score=53.00 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=69.5
Q ss_pred CeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhccccccccCcCccccchhhccCchHHHhhhc
Q 001912 630 SAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEMSDKTDRGSEDLTLDQVASSDQFQELMK 709 (997)
Q Consensus 630 k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (997)
++|.||..+.+||..+.+++++++.++.++....++..+.+.+..+....+... .....+++..+....+.+++..++
T Consensus 1 ~dI~IHVPy~~~SaQ~~L~rWYheGLnaFe~t~p~g~~v~~~f~~~L~~~l~~~--~~~~~~~Li~~t~~~~~~L~~~Le 78 (362)
T PF12137_consen 1 HDIQIHVPYLEGSAQEVLFRWYHEGLNAFEQTCPAGQAVYEQFGDELEDLLAQP--DREALDALIAETRALRQQLKAQLE 78 (362)
T ss_dssp S--EEEEEEETTSHHHHHHHHHHHTT--SSS--SSHHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecccCCCHHHHHHHHHHHHHhHHhccCccHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998887766665543 334556677777788888888888
Q ss_pred CCCCcccccccccCCChhhhHHhhhhhhccCCCCC
Q 001912 710 VPESSEASDFRAINTNDEITAKMNDKLLEESKTDH 744 (997)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (997)
.|. +.+.+.++.+...+.....-+.+.++..
T Consensus 79 ~GR----DrLLElnS~~~~~A~~L~~~I~~~d~~~ 109 (362)
T PF12137_consen 79 QGR----DRLLELNSCRPERAEELIEAIEEEDNDP 109 (362)
T ss_dssp TT------TTHHHHTT--HHHHHHHHHHTTTT--H
T ss_pred hCc----HHHHHHhcCCcHHHHHHHHHHHHhcCCc
Confidence 765 3344444444444444433444444443
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=76.31 E-value=26 Score=37.70 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=35.0
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELER 264 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k 264 (997)
+.+|.-.+|+-.+|+|||+-++-++......| +++++.--.-..+-.+.+..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHH
Confidence 33355578899999999999998877654444 78888755333443333333
No 360
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=76.20 E-value=14 Score=45.04 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=29.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCcchHHHHHHH
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLSWAEE 261 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~sL~~qW~~E 261 (997)
++|.-+.|+|||..+-+++.+... ...++.|.-..++..+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS 362 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH
Confidence 788899999999998888877654 2345555444555444433
No 361
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.16 E-value=18 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..|+.-+.|+|||..|.+++..+.-
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcC
Confidence 4689999999999999999988653
No 362
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=76.14 E-value=13 Score=43.31 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=63.2
Q ss_pred EEEcCCCchHHHHHHHHHH-HHh---hCCcEEEEeCc--chHHHHHHHHHHHCCCCCCc-eEEEEccCCCC--cccccC-
Q 001912 220 LIADEMGLGKTLQAIAIAA-CFI---SAGSILVVCPA--ILRLSWAEELERWLPFCLPA-DIHLVFGHRNN--PVHLTR- 289 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~-~~~---~~gp~LIV~P~--sL~~qW~~Ei~k~~p~~~~~-~i~~~~g~~~~--~~~~~~- 289 (997)
++.-..|+|||..++..+. ... ....+||+-|+ ++..+-..++...++.+... .+.. ... ......
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~----~~~~~~i~~~~~ 80 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKK----SKSSMEIKILNT 80 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheee----cCCccEEEecCC
Confidence 4455689999998775433 222 23457888887 55555555555443321100 1110 111 111111
Q ss_pred CCeEEEEeh-hHHHHHHHhhhh-ccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--cCcEEEEeccCCC
Q 001912 290 FPRVVVISY-TMLHRLRKSMIE-QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--VKRIVLLSGTPSL 358 (997)
Q Consensus 290 ~~~VvItTy-~~l~~~~~~l~~-~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~~~~llLTGTPi~ 358 (997)
...|++.+- +.. +.+.. ..++.+++|||..+. ...+..+...++. .+.++++|.||-.
T Consensus 81 g~~i~f~g~~d~~----~~ik~~~~~~~~~idEa~~~~-------~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKP----NKLKSGAGIAIIWFEEASQLT-------FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCCh----hHhhCcceeeeehhhhhhhcC-------HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 223444443 222 22333 236999999999883 2235555443332 2234999999953
No 363
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.12 E-value=21 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~ 241 (997)
.|+.-+.|+|||..|.+++..+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999998765
No 364
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.00 E-value=3.4 Score=42.34 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=27.8
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEe
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVC 250 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~ 250 (997)
.++.+.+|.-++|+|||..|.+++..+...|. ++.+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 34667888899999999999999988777664 55554
No 365
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=75.91 E-value=26 Score=39.90 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHhc----CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 201 ILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~----~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+||+|...-+.+... ....|+.-+.|.|||..|..++..+.-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 477777776665432 225678999999999999999987754
No 366
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=75.85 E-value=5.7 Score=44.72 Aligned_cols=41 Identities=24% Similarity=0.211 Sum_probs=34.5
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+-+.|.+-+..+++.+++.|++-+||+|||-..-+++...
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45577888888788878889999999999999998887765
No 367
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=75.68 E-value=1.4 Score=36.38 Aligned_cols=43 Identities=21% Similarity=0.449 Sum_probs=32.2
Q ss_pred cccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 905 LCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 905 lc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
.|-.|..++...... .-++..-+|||.+|...|.+++++..++
T Consensus 5 ~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~~~~~rnPRk~~ 50 (66)
T COG2075 5 VCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLK 50 (66)
T ss_pred EecCcCCccCCCceEEEEecCCeEEEEechhHHHHHHccCCCccch
Confidence 477777776544221 1245678999999999999999998876
No 368
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.64 E-value=42 Score=36.89 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=49.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
.++.-..|.|||-++.-++..+...| ++++|.--.....=.+++..|..... +.++...... ++
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~---i~~~~~~~~~------dp------ 139 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG---VDVIKQKEGA------DP------ 139 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC---eEEEeCCCCC------CH------
Confidence 44667999999999999988777665 67777644222212344555543221 2222111100 00
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccc
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
-.............++++||||=+-+.-
T Consensus 140 ~~~~~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 140 AAVAFDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 0111111222334679999999988763
No 369
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=75.62 E-value=27 Score=43.60 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+..++..+. ..|+.-+.|.|||..|-+++..+.
T Consensus 27 v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 27 VQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 344444555432 358999999999999999988754
No 370
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=75.55 E-value=16 Score=45.61 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C----cEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G----SILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
|-|-|+++|.+. .|.+++--..|+|||.+.+.-+.++... + .+|+|+.+ ....+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~~---~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEYV---TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 668899998652 4566777779999999999887777643 2 37888776 67777777777655310
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHH-HHh-hh--hccccEEEeccccc
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKS-MI--EQDWALLIVDESHH 323 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~-~~~-l~--~~~~~~VIvDEaH~ 323 (997)
...+|.|.|+..+... ... .. ......-|+|+...
T Consensus 74 --------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 --------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred --------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 1235789999888652 221 11 12233467777653
No 371
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=75.47 E-value=2.2 Score=43.47 Aligned_cols=32 Identities=44% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC--cEEEEeCc
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG--SILVVCPA 252 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g--p~LIV~P~ 252 (997)
|.|| =|-|||-....++..+...+ +++|.+|.
T Consensus 2 ltA~-RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 2 LTAD-RGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp EEE--TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred ccCC-CCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 4444 89999987766555555444 68999998
No 372
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=75.15 E-value=15 Score=46.48 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=67.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C----cEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G----SILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..|-|-|+++|.+. .|.+++-...|+|||.+.+.-+.++... + .+|+|+-+ .......+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~---~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~--- 81 (721)
T PRK11773 8 DSLNDKQREAVAAP---LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS--- 81 (721)
T ss_pred HhcCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC---
Confidence 46889999999742 4566777779999999999888877652 2 48999998 55555666666644310
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHH-HHh-hh--hccccEEEeccccc
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKS-MI--EQDWALLIVDESHH 323 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~-~~~-l~--~~~~~~VIvDEaH~ 323 (997)
...+.|.|+..+... ... .. ...-..-|+|+...
T Consensus 82 -----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 -----------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred -----------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 124678999887652 111 11 12234567787653
No 373
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=74.99 E-value=16 Score=41.88 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHh------cCCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 202 LPFQLEGVRFGLR------RGGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 202 ~pyQ~~gV~~~l~------~~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
|..|.+.+...+. .++.++|.-+.|+|||..+-+++..+.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5666666654432 234688999999999999988877654
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=74.97 E-value=21 Score=41.89 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=26.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh-h-CCcEEEEeCc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI-S-AGSILVVCPA 252 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~-~-~gp~LIV~P~ 252 (997)
-.+++-..|+|||.++.-++.++. . ..++++|.=-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 467889999999999999988765 3 3466666644
No 375
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=74.96 E-value=35 Score=38.67 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=44.1
Q ss_pred EEcCCCchHHHHHHHHH-HHHhh-C-CcEEEEeCc--chHHH---HHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 221 IADEMGLGKTLQAIAIA-ACFIS-A-GSILVVCPA--ILRLS---WAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 221 LaDemGLGKTlqaial~-~~~~~-~-gp~LIV~P~--sL~~q---W~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
|.-.-|+|||...+..+ ..... . ++.+|++|+ .+..+ -...+..+.+... .+... ...+....+.....
T Consensus 2 i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~nG~~ 78 (384)
T PF03237_consen 2 INGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWF--EIKFN-EWNDRKIILPNGSR 78 (384)
T ss_dssp EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTT--S--EE-EE-SSEEEETTS-E
T ss_pred CcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhc--Ccccc-cCCCCcEEecCceE
Confidence 44458999999876543 33333 2 256777777 44443 1223333333311 11111 11111111223444
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEeccccccc
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
|.+.+.+.-. ....+....+++||+||+-.+.
T Consensus 79 i~~~~~~~~~-~~~~~~G~~~~~i~iDE~~~~~ 110 (384)
T PF03237_consen 79 IQFRGADSPD-SGDNIRGFEYDLIIIDEAAKVP 110 (384)
T ss_dssp EEEES------SHHHHHTS--SEEEEESGGGST
T ss_pred EEEecccccc-ccccccccccceeeeeecccCc
Confidence 5555554321 2344556889999999988774
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=74.89 E-value=18 Score=36.48 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=24.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGS-ILVVC 250 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~ 250 (997)
.++.-+.|.|||..+..++..+...+. +++|.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 367788999999999999888776664 54444
No 377
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=74.77 E-value=24 Score=40.86 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=23.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
++++|.-+.|+|||..+-.++..+...+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999988765543
No 378
>CHL00206 ycf2 Ycf2; Provisional
Probab=74.69 E-value=11 Score=51.28 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=33.5
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW 258 (997)
.-..|+||.-++|+|||+.|=|+|... .-|++-|..+.++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es--~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS--YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc--CCceEEEEHHHHhhcc
Confidence 345588999999999999999998863 3467777666777766
No 379
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=74.47 E-value=11 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~ 239 (997)
..+||.-+.|+|||..|-+++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999888765
No 380
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=74.32 E-value=15 Score=38.15 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=54.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCce-EEEEccCCCCcccccCCCeEEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~-i~~~~g~~~~~~~~~~~~~VvIt 296 (997)
...|+...|.|||..++.-+..+...|.=+||.=-.. .=..|....+..+.... ..+.+ ..+.+.
T Consensus 7 kIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet--hgR~et~~l~~gLe~iP~~~i~y------------~g~~~~ 72 (211)
T PF02702_consen 7 KIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET--HGRPETEALLEGLEVIPRKKIEY------------RGRTLE 72 (211)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-----TT-HHHHHHHCTS-B---EEEEE------------TTEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC--CCcHHHHHHHcCCCcCCCeeEee------------CCEecc
Confidence 5789999999999999999999888887555532110 11122222222211000 00000 011121
Q ss_pred ehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
-+ +.+.+...++.+|+|||-=+- |.......++|+-+..+...
T Consensus 73 E~-----DldaiL~R~P~vvLVDELAHt-N~pgsr~~kR~qDVeeLL~a 115 (211)
T PF02702_consen 73 EM-----DLDAILARRPQVVLVDELAHT-NAPGSRHKKRYQDVEELLDA 115 (211)
T ss_dssp E-------HHHHHHH--SEEEES-TT-B---TT-SSSBHHHHHHHHHHT
T ss_pred cC-----CHHHHHhcCCCEEEeCccccc-CCCCCCCcccHHhHHHHHHC
Confidence 11 345556689999999994432 33344556788888888743
No 381
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.99 E-value=27 Score=42.91 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~ 241 (997)
.|+.-+.|+|||..+.+++..+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48899999999999999988764
No 382
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=73.40 E-value=44 Score=37.61 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=65.7
Q ss_pred cChhhHHHHHHHHH---hcC---CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912 200 VILPFQLEGVRFGL---RRG---GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l---~~~---g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
.+||+|....+.+. .++ ...|+..+.|+||+..|.+++..+.=..+.- .|-... .-...+.....++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C----~sC~~~~~g~HPD- 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFC----HSCELMQSGNHPD- 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCC----HHHHHHHcCCCCC-
Confidence 46788877776643 222 2578999999999999999988765332210 111111 1111121222232
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
++.+...+.. . .++-+.++...+.+. ..++.++|||+||++. .....++.+....
T Consensus 76 ~~~i~p~~~~-------~---~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------~~AaNaLLKtLEE 134 (319)
T PRK06090 76 LHVIKPEKEG-------K---SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-------ESASNALLKTLEE 134 (319)
T ss_pred EEEEecCcCC-------C---cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC-------HHHHHHHHHHhcC
Confidence 3332211100 0 123455554443332 2468999999999993 3445666666543
No 383
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=73.29 E-value=12 Score=41.75 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=19.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.++|.-+.|+|||..+.+++..+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998887754
No 384
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=73.13 E-value=3.1 Score=33.30 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 001912 4 TEEQRQRAEANRLAALAKR 22 (997)
Q Consensus 4 ~~eq~~~~e~~r~~a~~~~ 22 (997)
-||+-.+||+||.+|.-||
T Consensus 34 ie~ke~~~eenRkkA~RK~ 52 (54)
T PF11240_consen 34 IEEKEAKIEENRKKAARKR 52 (54)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3788899999999998776
No 385
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.10 E-value=31 Score=41.26 Aligned_cols=130 Identities=18% Similarity=0.065 Sum_probs=65.0
Q ss_pred hhHHHHHHHHH--h------cCCCeEEEcCCCchHHHHHHHHHHHHhh----CCc-EEEEeCc-chHHHHHHHHHHH---
Q 001912 203 PFQLEGVRFGL--R------RGGRCLIADEMGLGKTLQAIAIAACFIS----AGS-ILVVCPA-ILRLSWAEELERW--- 265 (997)
Q Consensus 203 pyQ~~gV~~~l--~------~~g~~ILaDemGLGKTlqaial~~~~~~----~gp-~LIV~P~-sL~~qW~~Ei~k~--- 265 (997)
|+|+-.+..++ + +-..++|.-.=|-|||..+.+++.+.+- .++ +++++++ .....=-+++.++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 68887776544 2 1224788888999999998887655432 233 6777777 2222222333333
Q ss_pred CCCCCCce-EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 266 LPFCLPAD-IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 266 ~p~~~~~~-i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
.|.+.... ..+....+...........+...| ...+.....+.+++|+||.|..++ ...+.++..-.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s-----~~~~~~dG~~~~~~i~DE~h~~~~------~~~~~~l~~g~ 148 (477)
T PF03354_consen 81 SPELRKRKKPKIIKSNKKEIEFPKTGSFFKALS-----SDADSLDGLNPSLAIFDELHAHKD------DELYDALESGM 148 (477)
T ss_pred ChhhccchhhhhhhhhceEEEEcCCCcEEEEEe-----cCCCCccCCCCceEEEeCCCCCCC------HHHHHHHHhhh
Confidence 33322100 000000011100011111222222 233445556889999999999964 33455555443
No 386
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=73.01 E-value=4.1 Score=46.76 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=22.3
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
-+|.|++|--+.|.|||..+-.++.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 35778888888999999887777665543
No 387
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=72.60 E-value=17 Score=45.15 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHH----HcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~----~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
.|.+++|.+.....+..+.+.+. ..|+++..++|+++..+|....+... .+++.|++.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~-~g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA-SGQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh-CCCCCEEEecHHHHhccccccccceE
Confidence 46789999998877666555554 44899999999999999999998887 67788866666566666777777766
Q ss_pred EEec
Q 001912 605 VFLE 608 (997)
Q Consensus 605 I~~D 608 (997)
|+=+
T Consensus 362 VIDE 365 (630)
T TIGR00643 362 IIDE 365 (630)
T ss_pred EEec
Confidence 6644
No 388
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=72.34 E-value=16 Score=40.91 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGS 245 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp 245 (997)
.|+..+.|.|||..|.+++..+....+
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 789999999999999999998875443
No 389
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=72.21 E-value=24 Score=40.08 Aligned_cols=123 Identities=8% Similarity=0.031 Sum_probs=66.6
Q ss_pred cChhhHHHHHHHHHh---cC---CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912 200 VILPFQLEGVRFGLR---RG---GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~---~~---g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
.+||+|....+.+.+ .| ...|+.-+-|+||+..|.+++..+.=..|.=- .|-... ...+.+.....++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-~~Cg~C----~sC~~~~~g~HPD- 75 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-KSCGHC----RGCQLMQAGTHPD- 75 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCC----HHHHHHHcCCCCC-
Confidence 367888887776542 22 25679999999999999999988653221000 011111 1111121122222
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
++.+...... -.++-+.++...+.+. ..++.++|||+|+++. .....++++....
T Consensus 76 ~~~i~p~~~~----------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~-------~~AaNaLLKtLEE 134 (334)
T PRK07993 76 YYTLTPEKGK----------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT-------DAAANALLKTLEE 134 (334)
T ss_pred EEEEeccccc----------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC-------HHHHHHHHHHhcC
Confidence 3333221110 0234555555544433 2478999999999983 4456666666543
No 390
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=72.21 E-value=8.3 Score=42.22 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHhcC-CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 201 ILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~-g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
+.+.|.+.+.+++... |.++++-++|+|||-..-+++..+...+..+|.
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iit 113 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIIT 113 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEE
Confidence 4567888888877654 457899999999999998888776443333333
No 391
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=72.19 E-value=32 Score=41.96 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHHhcC---CCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 206 LEGVRFGLRRG---GRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 206 ~~gV~~~l~~~---g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
...+..++..+ ...|+.-+.|.|||..|.+++..+.-
T Consensus 25 v~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 25 KKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33444444433 24678999999999999999988753
No 392
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=71.89 E-value=30 Score=42.07 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=49.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC-------eEEEEeCCCCHHHHHHHHHHhcc---CCCceEEEEec--cccccccCc
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGI-------GFVRIDGNTLPRDRQSAVHSFQL---SNEVKIAIIGI--TAGGVGLDF 598 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi-------~~~~idG~~s~~eR~~~i~~F~~---~~~~~VlLlSt--~agg~GLNL 598 (997)
.=|++|...-+.+..+.+.....|+ +-+.+.-..+ -..+++.|.. .+...+ |++. .-.++|||+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Gai-LlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAI-LLAVVGGKLSEGINF 705 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeE-EEEEecccccccccc
Confidence 3488888888888888888886654 2222222222 2345666653 233333 4443 255799999
Q ss_pred cc--ccEEEEecCCCC
Q 001912 599 SS--AQNVVFLELPQS 612 (997)
Q Consensus 599 ~~--A~~VI~~D~~wn 612 (997)
.+ +..||..-+|+-
T Consensus 706 ~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYP 721 (821)
T ss_pred ccccccEEEEeecCCC
Confidence 87 788888888764
No 393
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=71.85 E-value=36 Score=36.36 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.0
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA 252 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~ 252 (997)
.+|.-.+|+-.+|+|||..++.++..... ..+++++..-
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 33445688999999999999988776554 5688888854
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=71.74 E-value=7.9 Score=39.84 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=37.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LI 248 (997)
.+-+.|.+-+.++++.++.++++-++|+|||-..-+++..+.....++.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ 57 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIIT 57 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 4456788888888988889999999999999888777665544444433
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.15 E-value=69 Score=37.60 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
-+++.-..|+|||-++.-++.++...| ++++|+--
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 355777899999999999988877655 67777654
No 396
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=70.87 E-value=40 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=25.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
..++.-++|.|||..|-+++..+...+..+|.+-
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 4789999999999999999987765443444433
No 397
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=70.77 E-value=10 Score=46.20 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=50.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-------CCcEEEEeCc-chHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-------AGSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-------~gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
..|-.-|+.+.++++... -.|+.-+.|+|||++.+-+...++. .-|+||||=+ +.+.|...-+..
T Consensus 377 ~ildsSq~~A~qs~ltye-lsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYE-LSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhhhh-hheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 367778999999987643 3588899999999998877665543 3489999998 889998766654
No 398
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.72 E-value=6.1 Score=43.30 Aligned_cols=48 Identities=25% Similarity=0.197 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEe
Q 001912 203 PFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVC 250 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~ 250 (997)
+...+.+..+++.++++|++-++|+|||-+.-+++...... ..+++|-
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 33444444455567889999999999999998888766555 4444443
No 399
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.48 E-value=30 Score=40.89 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..|+||.-+.|+|||+.|=|++-.. .=|+.... -.||.. +. |=
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA--~VPFF~~s--------GSEFdE---------m~------------------VG 379 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA--GVPFFYAS--------GSEFDE---------MF------------------VG 379 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc--CCCeEecc--------ccchhh---------hh------------------hc
Confidence 3479999999999999998887641 11211100 011111 00 11
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHH-HHHHHHHHh------hcCcEEEEeccCCCCChhHHHHHH
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE-VKAVLDVAA------KVKRIVLLSGTPSLSRPYDIFHQI 368 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~-~~al~~l~~------~~~~~llLTGTPi~n~~~El~~ll 368 (997)
..--.++.+...-....+.++.|||...+........... -+.+..+.. +..-+|.+-||- .+++|=.
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN---fpe~LD~-- 454 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN---FPEALDK-- 454 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC---ChhhhhH--
Confidence 1222333444444557789999999998853322221111 122223321 345689999994 4444433
Q ss_pred HhhccCCccc
Q 001912 369 NMLWPGLLGK 378 (997)
Q Consensus 369 ~~l~p~~~~~ 378 (997)
.+++||.|..
T Consensus 455 AL~RPGRFD~ 464 (752)
T KOG0734|consen 455 ALTRPGRFDR 464 (752)
T ss_pred HhcCCCccce
Confidence 2467888753
No 400
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=70.47 E-value=1.9 Score=34.64 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=31.2
Q ss_pred cccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 905 LCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 905 lc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
+|-.|..++.+.... .-++..-.|||.+|...|.+++++..++
T Consensus 5 ~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s~Kc~~~~~~krnPRkv~ 50 (54)
T cd00472 5 KCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLK 50 (54)
T ss_pred EecCcCCeecCCCccEEEecCCCEEEEECHHHHHHHHCcCCCCcce
Confidence 677777765444332 2256678999999999999999887653
No 401
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=70.39 E-value=2.3 Score=32.28 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=21.6
Q ss_pred ccccccccccccccC---CCcccccccccChhhhHhH
Q 001912 904 PLCKLCQKTCKSKNA---KNAEYFEDLFCNLDCYEEY 937 (997)
Q Consensus 904 plc~~c~~~~~~~~~---~~~~~~~~~fc~~~c~~~~ 937 (997)
-.|-+|.+.+..... ...++-.-.|||..|...|
T Consensus 7 ~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~y 43 (43)
T PF06467_consen 7 KTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSSY 43 (43)
T ss_dssp EE-TTT--EEECCC----EE-TTTTSCCSSHHHHHHH
T ss_pred CcCcccCCcccCCCccccccccCcccChhCHHHHhhC
Confidence 379999998765542 3334567799999999887
No 402
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=69.80 E-value=41 Score=40.67 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 207 EGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 207 ~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+..+++.|. ..|+.-+.|.|||-.|-+++..+.
T Consensus 24 ~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 44444555443 248899999999999999988764
No 403
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=69.59 E-value=48 Score=35.47 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHHHHhhCC-cEEEEe--CcchHHHHHH
Q 001912 225 MGLGKTLQAIAIAACFISAG-SILVVC--PAILRLSWAE 260 (997)
Q Consensus 225 mGLGKTlqaial~~~~~~~g-p~LIV~--P~sL~~qW~~ 260 (997)
=|.|||..++.++..+...| +++||= |..-...|..
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Confidence 48999999999998887776 566553 4455667864
No 404
>PRK11054 helD DNA helicase IV; Provisional
Probab=69.34 E-value=9.6 Score=47.56 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-----cEEEEeCcchHHHHHHH-HHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAG-----SILVVCPAILRLSWAEE-LERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-----p~LIV~P~sL~~qW~~E-i~k~~p~~~~~ 272 (997)
..|-+-|+++|... .+.+++.-..|+|||.+.++-+.+++..+ .+|+++.+.-..+...| +...++
T Consensus 195 ~~L~~~Q~~av~~~---~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 195 SPLNPSQARAVVNG---EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCHHHHHHHhCC---CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 47899999999643 23455566699999999999888776533 59999999666555444 555432
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHH
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHR 303 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~ 303 (997)
..+|.|.|+..+..
T Consensus 267 -----------------~~~v~v~TFHSlal 280 (684)
T PRK11054 267 -----------------TEDITARTFHALAL 280 (684)
T ss_pred -----------------CCCcEEEeHHHHHH
Confidence 12578899988875
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.18 E-value=50 Score=37.05 Aligned_cols=93 Identities=17% Similarity=0.338 Sum_probs=56.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
.++.--.|.|||-+..=++.+|...|. +|+.+=-.-+.-=.+++.-|.... .+.++.+.... ++ .-+-
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~---gv~vI~~~~G~------Dp--AaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL---GVPVISGKEGA------DP--AAVA 210 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh---CCeEEccCCCC------Cc--HHHH
Confidence 456667999999999989999988875 555554444444555566664332 23333321110 10 1122
Q ss_pred hhHHHHHHHhhhhccccEEEecccccccc
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
|+.+ +.-...++|+||+|=|=|+-|
T Consensus 211 fDAi----~~Akar~~DvvliDTAGRLhn 235 (340)
T COG0552 211 FDAI----QAAKARGIDVVLIDTAGRLHN 235 (340)
T ss_pred HHHH----HHHHHcCCCEEEEeCcccccC
Confidence 3333 233457999999999999975
No 406
>PRK10867 signal recognition particle protein; Provisional
Probab=69.13 E-value=37 Score=39.97 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=30.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-C-cEEEEeCc----chHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-G-SILVVCPA----ILRLSWA 259 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-g-p~LIV~P~----sL~~qW~ 259 (997)
-.++.-..|+|||.+++-++.++... | ++++|+=- ....||.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~ 149 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK 149 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH
Confidence 35688899999999999998887765 4 56666644 3445554
No 407
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=68.68 E-value=43 Score=34.28 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=21.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..||.-+.|.|||-.+..++..+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4788999999999999999887654
No 408
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=68.63 E-value=51 Score=34.93 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=18.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~ 242 (997)
.+|.-+.|+|||--.-|++..+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 688899999999977777665543
No 409
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=68.55 E-value=51 Score=37.34 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..|+.-+.|.|||..|.+++..+.-
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3589999999999999999887653
No 410
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=68.37 E-value=43 Score=39.29 Aligned_cols=42 Identities=24% Similarity=0.153 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 225 MGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 225 mGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
-|+|||+.-+.=++.+.. .++++|-+=+ +|..+..+-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 799999987765555543 5668888887 66666666555554
No 411
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=67.75 E-value=16 Score=45.68 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=65.5
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C----cEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G----SILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g----p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
.|-|-|+++|.+. .|.+++....|+|||.+.+.-+.+++.. + .+|+|+.+ .......+-+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~---~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEFV---TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhCC---CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 3678899999752 4567777779999999999888877753 3 38999998 55555666666554310
Q ss_pred EEEEccCCCCcccccCCCeEEEEehhHHHHH-HHh-hh--hccccEEEeccccc
Q 001912 274 IHLVFGHRNNPVHLTRFPRVVVISYTMLHRL-RKS-MI--EQDWALLIVDESHH 323 (997)
Q Consensus 274 i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~-~~~-l~--~~~~~~VIvDEaH~ 323 (997)
....|.|.|+..+... ... .. ...-+.-|+|+...
T Consensus 75 ---------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 ---------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 0124678888887642 211 11 12234567777653
No 412
>PHA00729 NTP-binding motif containing protein
Probab=67.71 E-value=74 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
+++|.-.+|+|||..|.+++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67888899999999999998864
No 413
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=67.68 E-value=82 Score=35.05 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+|.-+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999999999999988887753
No 414
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=67.59 E-value=8 Score=41.05 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=25.3
Q ss_pred ccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCC
Q 001912 311 QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSR 360 (997)
Q Consensus 311 ~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~ 360 (997)
...+.+||||++.+-+ .....+..+. +. ..+.|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~-------g~l~~l~~~~-~~-~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP-------GYLLLLLSLS-PA-KNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCCh-------HHHHHHHhhc-cC-cceEEEECchhcc
Confidence 3589999999999831 1122233322 23 3577779988754
No 415
>PHA00012 I assembly protein
Probab=67.54 E-value=11 Score=41.94 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=24.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcch
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL 254 (997)
++.--+|.|||+.|++-+...+..|. .|++--.|
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~Gr-~VaTNidL 38 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKGC-IVATNLNL 38 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcCC-EEEeCCcc
Confidence 34455999999999987777777786 44444443
No 416
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.49 E-value=12 Score=41.87 Aligned_cols=41 Identities=24% Similarity=0.156 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
-+-|.+-+..+++.++++|++-+||+|||-.+-+++.....
T Consensus 118 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 118 TAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34455556666777788999999999999999888876543
No 417
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=67.48 E-value=5.8 Score=44.92 Aligned_cols=37 Identities=32% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
|.+.||+.++|+|||-.|++++..+-..-|+..++-+
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 4467899999999999999999998888898888766
No 418
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=67.22 E-value=23 Score=38.51 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=36.7
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELE 263 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~ 263 (997)
.+|...++.-++|+|||+-++-++...... .|++.|.-...-.+-.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 346678899999999999999988877766 58999987644444333333
No 419
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=67.08 E-value=8.4 Score=41.95 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=19.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.++|.-+.|||||-.|--++..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Confidence 58999999999999887777764
No 420
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=66.68 E-value=39 Score=41.27 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 204 FQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 204 yQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+-...+...++.|. ..|+.-+.|.|||..|-+++..+.
T Consensus 23 ~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 23 FVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 33444555555432 368999999999999999988765
No 421
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.33 E-value=51 Score=40.69 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..|+.-+.|.|||..|..++..+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999988764
No 422
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.13 E-value=19 Score=45.57 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=25.7
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
..+.+++|.-+.|+|||..+-+++..+ ..+++.|-.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~--~~~~i~i~~ 245 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA--GAYFISING 245 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh--CCeEEEEec
Confidence 345678999999999999988887654 334444433
No 423
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.30 E-value=12 Score=42.18 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
+-+.|.+.+..+++.+++++++-.+|+|||-.+-+++..+
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4467888887788878899999999999998877777654
No 424
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=65.16 E-value=12 Score=40.95 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.5
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
.|..++|..++|+|||..|-+++..+ ..|++.|+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~l--g~~~~~i~ 53 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKR--DRPVMLIN 53 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHh--CCCEEEEe
Confidence 46779999999999999999998743 56776664
No 425
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=64.89 E-value=29 Score=41.87 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=35.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
-.++.-++|+|||.-+..++..... ..++++|.-.....+-.+.+..+
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc
Confidence 4577889999999999998876544 45788887665555555555544
No 426
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=64.68 E-value=43 Score=33.61 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=57.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
..|+.-+.|.||+-.|.+++..+....+.-..|-..- ....+.. ...+ ++..+....... ...
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~---~c~~~~~---~~~~-d~~~~~~~~~~~----------~i~ 83 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECR---SCRRIEE---GNHP-DFIIIKPDKKKK----------SIK 83 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSH---HHHHHHT---T-CT-TEEEEETTTSSS----------SBS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCH---HHHHHHh---ccCc-ceEEEecccccc----------hhh
Confidence 4688899999999999999998764332111222211 1112221 1111 233332211100 112
Q ss_pred hhHHHHHHHhhhh----ccccEEEeccccccccCCCCCcHHHHHHHHHHHhhc--CcEEEEecc
Q 001912 298 YTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKV--KRIVLLSGT 355 (997)
Q Consensus 298 y~~l~~~~~~l~~----~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~--~~~llLTGT 355 (997)
-+.++.....+.. .++.++|+||||.+. .....++++..... .-+++|+.+
T Consensus 84 i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-------~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 84 IDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-------EEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-------HHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 2444444443322 368899999999983 45566777666543 224455444
No 427
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=64.50 E-value=42 Score=37.95 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=20.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~ 240 (997)
+.++|.-+.|+|||..|-+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 368999999999999999888765
No 428
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=64.49 E-value=27 Score=37.15 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=28.0
Q ss_pred CCchHHHHHHHHHHHHhhCC-cEEEEe--CcchHHHHHHHH
Q 001912 225 MGLGKTLQAIAIAACFISAG-SILVVC--PAILRLSWAEEL 262 (997)
Q Consensus 225 mGLGKTlqaial~~~~~~~g-p~LIV~--P~sL~~qW~~Ei 262 (997)
=|.|||-.+++++..+...| ++.||= |..-+..|.+-.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhc
Confidence 38999999999999987655 555553 666666896543
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=64.13 E-value=14 Score=44.56 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~ 239 (997)
..++||.-++|+|||..+=+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999888775
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=63.90 E-value=46 Score=36.24 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCP 251 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P 251 (997)
|.-.+++-+.|+|||.-++-++..... ..++++|.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 334678999999999999988776544 458888883
No 431
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=63.49 E-value=3.7 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=26.3
Q ss_pred cccccccccccccccCCCcccccccccChhhhHhHhhccch
Q 001912 903 EPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYRLRTSG 943 (997)
Q Consensus 903 ~plc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~~~~~~~~ 943 (997)
+--|+.|.+.+.+. ....++||..|+..-.-+++.
T Consensus 6 ~~yC~~Cdk~~~~~------~~~~lYCSe~Cr~~D~~~~~~ 40 (43)
T PF12855_consen 6 NDYCIVCDKQIDPP------DDGSLYCSEECRLKDQEKSSS 40 (43)
T ss_pred hhHHHHhhccccCC------CCCccccCHHHHhHhhhcccc
Confidence 34699999977432 258899999999887776654
No 432
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.28 E-value=48 Score=40.66 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 205 QLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 205 Q~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
-...+..++..|. ..|+.-+-|.|||..|.+++..+.
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 24 VSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3344444444332 358999999999999999988764
No 433
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=63.23 E-value=3 Score=33.50 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=17.2
Q ss_pred cccccccccccccCCCcccccccccChhhhHh
Q 001912 905 LCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEE 936 (997)
Q Consensus 905 lc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~ 936 (997)
-|.-|..+.+ -+..|||++|+|.
T Consensus 10 HC~VCg~aIp---------~de~~CSe~C~ei 32 (64)
T COG4068 10 HCVVCGKAIP---------PDEQVCSEECGEI 32 (64)
T ss_pred cccccCCcCC---------CccchHHHHHHHH
Confidence 5666666554 3789999999964
No 434
>PRK06904 replicative DNA helicase; Validated
Probab=63.09 E-value=52 Score=39.31 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCc------
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNP------ 284 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~------ 284 (997)
+++|.=+|||--+|.|||.-++-++.... ...|++++..---..++...+.--........+ ..+..-..
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i--~~g~~l~~~e~~~~ 295 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKI--RTGQNLDQQDWAKI 295 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHh--ccCCCCCHHHHHHH
Confidence 34444578899999999999988876543 356899998886677766554433222111111 11100000
Q ss_pred ----ccccCCCeEEEE-----ehhHHHHHHHhhhh--ccccEEEeccccccccC
Q 001912 285 ----VHLTRFPRVVVI-----SYTMLHRLRKSMIE--QDWALLIVDESHHVRCS 327 (997)
Q Consensus 285 ----~~~~~~~~VvIt-----Ty~~l~~~~~~l~~--~~~~~VIvDEaH~iKN~ 327 (997)
..+.....+.|. |.+.+......+.. .+.++||||=-|.+...
T Consensus 296 ~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 296 SSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 011123345553 33444433333322 25889999999998754
No 435
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=62.99 E-value=46 Score=37.09 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=55.7
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHH-----------hhCCcEEEEeC----cchHHHHHHHHHHHCCCCCCceEEEEc
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACF-----------ISAGSILVVCP----AILRLSWAEELERWLPFCLPADIHLVF 278 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~-----------~~~gp~LIV~P----~sL~~qW~~Ei~k~~p~~~~~~i~~~~ 278 (997)
..+-..||+-+-|+|||..+|-+.-.+ .+.|.+|+|.- .+++.--..-..+.- +.+.++..+.
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mg--LsPadvrn~d 164 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMG--LSPADVRNMD 164 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcC--CChHhhhhee
Confidence 346678998899999999776432221 23466888763 355554444333331 2222222221
Q ss_pred cCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccc
Q 001912 279 GHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 279 g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
-.. ... .....-+|.. ..+++....+.+.++++||||-.=.+-
T Consensus 165 ltd-~~G--aa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~ 207 (402)
T COG3598 165 LTD-VSG--AADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFY 207 (402)
T ss_pred ccc-ccc--CCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhc
Confidence 100 000 0011113333 555555556667899999999765553
No 436
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=62.92 E-value=3.5 Score=35.19 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+..+. ..++..-.|||.+|...|.++.++.-|+
T Consensus 4 ~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F~s~Kc~~~~~~krnPrkl~ 50 (71)
T PF01246_consen 4 EKCSFSGYKIYPGHGKMYVRNDGKVFYFCSSKCEKLFKLKRNPRKLK 50 (71)
T ss_dssp EE-TTT-SEE-SSSSEEEE-TTS-EEEESSHHHHHHHHTT--GGGST
T ss_pred EEecccCCccCCCCCeEEEecCCCeEEEeCHHHHHHHHccCCcccch
Confidence 3688888876544332 3356788999999999999999987654
No 437
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=62.83 E-value=47 Score=36.55 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCC
Q 001912 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291 (997)
Q Consensus 212 ~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~ 291 (997)
+-+.|.-+++--.-|+|||-++.-+ .+..|.-++.+.+-...-..++..-.-
T Consensus 90 A~k~g~l~~vyg~~g~gKt~a~~~y----~~s~p~~~l~~~~p~~~a~~~i~~i~~------------------------ 141 (297)
T COG2842 90 ASKTGSLVVVYGYAGLGKTQAAKNY----APSNPNALLIEADPSYTALVLILIICA------------------------ 141 (297)
T ss_pred hhhcCceEEEeccccchhHHHHHhh----cccCccceeecCChhhHHHHHHHHHHH------------------------
Confidence 3444445677778999999887544 345565445444444444333333211
Q ss_pred eEEEEehhHHHHH----HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCC
Q 001912 292 RVVVISYTMLHRL----RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPS 357 (997)
Q Consensus 292 ~VvItTy~~l~~~----~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi 357 (997)
+..+.++..+... ...+ ...-.++|+|||.++. ......+..+..+..--+.|.|+|.
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~-------~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 142 AAFGATDGTINDLTERLMIRL-RDTVRLIIVDEADRLP-------YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred HHhcccchhHHHHHHHHHHHH-ccCcceeeeehhhccC-------hHHHHHHHHHHHhhCceEEEecChH
Confidence 0112222222221 1112 4678899999999985 3446666666666777789999995
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=62.74 E-value=15 Score=42.32 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=23.3
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhC
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISA 243 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~ 243 (997)
.+|.+++|.-+.|.|||..+-+++..+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 457788888899999998887777765443
No 439
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=62.43 E-value=32 Score=48.29 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=71.4
Q ss_pred ccChhhHHHHHHHHHhcC-CCeEEEcCCCchHHHHHHHHHH----HHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAA----CFISAG-SILVVCPAILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~-g~~ILaDemGLGKTlqaial~~----~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..|-+-|++++..++... .-++|--..|+|||.+..+++. .+...+ .++.++|+.-..+ ++.. . .....
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~---~L~~-~-g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVG---ELKS-A-GVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHH---HHHh-c-CCchH
Confidence 468999999999887643 3456667899999998844322 222233 5778889844322 2222 0 10000
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llL 352 (997)
.++ .+.... ..... .-....-+++|||||-++- +.....+..+.....-+++|
T Consensus 1093 Ti~----------s~l~~~-------~~~~~---~~~~~~~~v~ivDEasMv~-------~~~~~~l~~~~~~~~ak~vl 1145 (1960)
T TIGR02760 1093 TLD----------SFLTDI-------SLYRN---SGGDFRNTLFILDESSMVS-------NFQLTHATELVQKSGSRAVS 1145 (1960)
T ss_pred hHH----------HHhcCc-------ccccc---cCCCCcccEEEEEcccccc-------HHHHHHHHHhccCCCCEEEE
Confidence 000 000000 00000 0001356899999999983 34455666655455567999
Q ss_pred eccCCC
Q 001912 353 SGTPSL 358 (997)
Q Consensus 353 TGTPi~ 358 (997)
.|=+-|
T Consensus 1146 vGD~~Q 1151 (1960)
T TIGR02760 1146 LGDIAQ 1151 (1960)
T ss_pred eCChhh
Confidence 998754
No 440
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=62.17 E-value=74 Score=35.97 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHhc----CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 201 ILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~----~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+||+|....+.+... ....|+.-+.|+|||..|..++..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 477777776655532 22477999999999999999988765
No 441
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=62.15 E-value=1.6e+02 Score=37.27 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=57.9
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHH-HhhCCc-----EEEEeCc-----chHHHHHHHHHHHCCCCCCceEEEEccCCC
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAAC-FISAGS-----ILVVCPA-----ILRLSWAEELERWLPFCLPADIHLVFGHRN 282 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~-~~~~gp-----~LIV~P~-----sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~ 282 (997)
..+.-+++--|+|+|||-|....+.. +...+- +.+--|. ++.+..++|=..-.... ..+.-+.
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~t-----vgy~vRf- 464 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGET-----CGYNVRF- 464 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccc-----ccccccc-
Confidence 34666888899999999998876544 333221 2222233 44444444433222211 1111111
Q ss_pred CcccccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccc
Q 001912 283 NPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 283 ~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~i 324 (997)
....-....-|+.+|-+.+.+....- .....++|+||.|..
T Consensus 465 ~Sa~prpyg~i~fctvgvllr~~e~g-lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 465 DSATPRPYGSIMFCTVGVLLRMMENG-LRGISHVIIDEIHER 505 (1282)
T ss_pred cccccccccceeeeccchhhhhhhhc-ccccccccchhhhhh
Confidence 11111124467888988887755432 257889999999986
No 442
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=62.05 E-value=14 Score=41.90 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEE
Q 001912 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248 (997)
Q Consensus 207 ~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LI 248 (997)
+-+.++++.+++++++-++|+|||-..-+++.+.-...++++
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~t 192 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPAIERLIT 192 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEE
Confidence 344456677889999999999999999888776655555544
No 443
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=61.93 E-value=79 Score=38.18 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=58.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCcchHHHHHHHHHHHCCCCCC----ceEEEEccCCCCcccccC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPAILRLSWAEELERWLPFCLP----ADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~----~~i~~~~g~~~~~~~~~~ 289 (997)
|.-.+|+-++|+|||+-++-++..... ..++|+|.=..-..+-.+.+..+-.++.. ..+.+....... ..
T Consensus 31 Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~-~~--- 106 (509)
T PRK09302 31 GRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDP-SE--- 106 (509)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccc-cc---
Confidence 445678999999999999988765554 35888888666555655555554221110 011111111100 00
Q ss_pred CCeEEEEehh-HHHHHHHhhhhccccEEEeccccccc
Q 001912 290 FPRVVVISYT-MLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 290 ~~~VvItTy~-~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
..+.--...+ .+......+...+.++||||=...+.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 0000001122 23344455556788999999887654
No 444
>PF13479 AAA_24: AAA domain
Probab=61.85 E-value=18 Score=38.14 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
+-+++|.-+.|+|||..+..+ .++|+|-.- ... ....+.....|-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~-------~k~l~id~E~g~~---------------------------~~~~~~~~~~i~ 48 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL-------PKPLFIDTENGSD---------------------------SLKFLDDGDVIP 48 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC-------CCeEEEEeCCCcc---------------------------chhhhcCCCeeC
Confidence 446788899999999877654 334444322 110 000010123355
Q ss_pred EEehhHHHHHHHhhh--hccccEEEecccccc
Q 001912 295 VISYTMLHRLRKSMI--EQDWALLIVDESHHV 324 (997)
Q Consensus 295 ItTy~~l~~~~~~l~--~~~~~~VIvDEaH~i 324 (997)
|.+++.+......+. ...++.||||-+-.+
T Consensus 49 i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 49 ITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred cCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 669998888665542 368999999988766
No 445
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.79 E-value=81 Score=34.04 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=33.4
Q ss_pred HHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHH
Q 001912 209 VRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEE 261 (997)
Q Consensus 209 V~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~E 261 (997)
|..++.-..|++|--+.|+|||+.|=|++.. ...-++=|.-+.|+..+.-|
T Consensus 204 v~lgidppkgvllygppgtgktl~aravanr--tdacfirvigselvqkyvge 254 (435)
T KOG0729|consen 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANR--TDACFIRVIGSELVQKYVGE 254 (435)
T ss_pred hhcCCCCCCceEEeCCCCCchhHHHHHHhcc--cCceEEeehhHHHHHHHhhh
Confidence 3344555678999999999999999887753 22233444445566555444
No 446
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.77 E-value=60 Score=38.03 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=67.1
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHh-hC--CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCC
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFI-SA--GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~-~~--gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~ 291 (997)
.|+.+.|.-..|.|||-+..-++..+. .. ..+-+|+.........+.+..|..-. ...+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~il-Gvp~~---------------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLL-GVSVR---------------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHc-CCcee----------------
Confidence 455677888999999999877765432 22 24444444433333334444443211 00011
Q ss_pred eEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---hcCcEEEEeccCCCCChhHHHHHH
Q 001912 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRIVLLSGTPSLSRPYDIFHQI 368 (997)
Q Consensus 292 ~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~~~~~llLTGTPi~n~~~El~~ll 368 (997)
++.+...+......+ .+++.|+||.+=+.. ........+..+.. .....|.|++|--.+.+.++...+
T Consensus 253 --~v~~~~dl~~al~~l--~~~d~VLIDTaGrsq-----rd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 253 --SIKDIADLQLMLHEL--RGKHMVLIDTVGMSQ-----RDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred --cCCCHHHHHHHHHHh--cCCCEEEecCCCCCc-----chHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 111222222222222 468999999863332 12333444444432 234568899996666666555544
Q ss_pred Hhh
Q 001912 369 NML 371 (997)
Q Consensus 369 ~~l 371 (997)
..+
T Consensus 324 ~~~ 326 (420)
T PRK14721 324 QGH 326 (420)
T ss_pred cCC
Confidence 433
No 447
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=61.51 E-value=74 Score=31.90 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=62.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc---chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCPA---ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~---sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
+.+-.-|.|||..++.++..+...| ++|+|-=. +.+. |. |... .
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~-~~-----~~~~--------------~------------ 51 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIP-KM-----WRGP--------------M------------ 51 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCch-HH-----HhCc--------------c------------
Confidence 4556679999999999998887655 57666311 1111 11 1000 0
Q ss_pred EehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLW 372 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~ 372 (997)
....+......+...++|+||+|=...+- .... .+..+ ..+ ..+++..+|-..+..+....++.+.
T Consensus 52 -~~~~l~~~~~~~~~~~yD~VIiD~pp~~~-------~~~~-~~~~~-~~a-d~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 52 -KMGAIKQFLTDVDWGELDYLVIDMPPGTG-------DEHL-TLAQS-LPI-DGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred -hHHHHHHHHHHhhcCCCCEEEEeCCCCCc-------HHHH-HHHhc-cCC-CeEEEEECCchhhHHHHHHHHHHHH
Confidence 01223333333333689999999888652 1111 11110 123 3466666888888888888777764
No 448
>PRK08760 replicative DNA helicase; Provisional
Probab=61.35 E-value=54 Score=39.19 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh-h-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccc------
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI-S-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHL------ 287 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~-~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~------ 287 (997)
|.=.|||-.+|.|||.-++-++.... . ..+++++..---..||...+...........+ ..|.- ...++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i--~~g~l-~~~e~~~~~~a 305 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRL--RTGAL-EDEDWARVTGA 305 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHH--hcCCC-CHHHHHHHHHH
Confidence 44468899999999999998887653 3 56899998887777887766554322211111 11110 00000
Q ss_pred ---cCCCeEEEEe-----hhHHHHHHHhh-hhccccEEEeccccccccC
Q 001912 288 ---TRFPRVVVIS-----YTMLHRLRKSM-IEQDWALLIVDESHHVRCS 327 (997)
Q Consensus 288 ---~~~~~VvItT-----y~~l~~~~~~l-~~~~~~~VIvDEaH~iKN~ 327 (997)
.....++|.. .+.+......+ ...+.++||||=-|.++..
T Consensus 306 ~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~ 354 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVP 354 (476)
T ss_pred HHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCC
Confidence 0123444442 23333322222 2356899999999988643
No 449
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.33 E-value=37 Score=38.61 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=55.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
++++-=-|.|||-++.-++.+|.+. +++.+||-..-..---+.++.|.-.. .+.++...... + .
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~---~iP~ygsyte~------d------p 168 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA---RVPFYGSYTEA------D------P 168 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh---CCeeEeccccc------c------h
Confidence 4466668999999999898888765 46777776654444445555553221 12222211110 0 0
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccc
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
...+..-.+.+.+.+|++||+|-+-+.+
T Consensus 169 v~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 169 VKIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 1122334566778899999999998875
No 450
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.21 E-value=28 Score=41.88 Aligned_cols=78 Identities=10% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEK-GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF 606 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~-gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~ 606 (997)
..|.++||.+........+.+.|+.. |..+..+||+++..+|.+...+.. .++..|++.+..+. =+-+.....||+
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~-~g~~~IVVGTrsal--f~p~~~l~lIIV 99 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVK-NGEILVVIGTRSAL--FLPFKNLGLIIV 99 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHH-cCCCCEEECChHHH--cCcccCCCEEEE
Confidence 34778999999999888888888765 788999999999999988877766 56677744443332 234556666766
Q ss_pred ec
Q 001912 607 LE 608 (997)
Q Consensus 607 ~D 608 (997)
-|
T Consensus 100 DE 101 (505)
T TIGR00595 100 DE 101 (505)
T ss_pred EC
Confidence 55
No 451
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=60.21 E-value=73 Score=37.03 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=28.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAI 253 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~s 253 (997)
-.+|.-++|+|||--+-|+..+....+|-..|.+.+
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 478999999999998888887777777766666553
No 452
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=60.00 E-value=47 Score=40.57 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..|+.-+.|+|||..|-.++..+.
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 357799999999999999887754
No 453
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=59.97 E-value=29 Score=42.40 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=61.0
Q ss_pred CCCCeEEEEeCCH----HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCccccc
Q 001912 528 PRSNKMIIFAHHL----KVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDFSSAQ 602 (997)
Q Consensus 528 ~~~~KvLVFs~~~----~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL~~A~ 602 (997)
+.|.++.+.+..- ++.+-+.++|...|+.+..+.|++...+|.++.++-. +|++.+ ++.|.| .-..+++...-
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~-~G~~~i-vVGTHALiQd~V~F~~Lg 386 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA-SGEIDI-VVGTHALIQDKVEFHNLG 386 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh-CCCCCE-EEEcchhhhcceeeccee
Confidence 5577777777643 3567788888888999999999999999999999998 788999 555554 56677777776
Q ss_pred EEEE
Q 001912 603 NVVF 606 (997)
Q Consensus 603 ~VI~ 606 (997)
.||+
T Consensus 387 LVIi 390 (677)
T COG1200 387 LVII 390 (677)
T ss_pred EEEE
Confidence 6665
No 454
>PRK12377 putative replication protein; Provisional
Probab=59.94 E-value=24 Score=38.20 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSW 258 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW 258 (997)
..+.+|.-++|+|||..|.|++..+...|...++++. .++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 3467888999999999999999988877654344433 455444
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=59.85 E-value=28 Score=39.87 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHH--hcCCCeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 206 LEGVRFGL--RRGGRCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 206 ~~gV~~~l--~~~g~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
..+|..+. -+|.|++|--+.|.|||..+..++.......
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34666554 4677899999999999999988887765544
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.38 E-value=34 Score=42.97 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh-hCC--cEEEEeCcc----hHHHHHHHHHHHCCCCCCceEEEEccCCCCccccc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI-SAG--SILVVCPAI----LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT 288 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~-~~g--p~LIV~P~s----L~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~ 288 (997)
++-+.|.-..|.|||-++.-++..+. ..| ++.+|.-.. .+.||.. |..... +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~----~a~~~g---vp------------- 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRI----YGRILG---VP------------- 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHH----HHHhCC---CC-------------
Confidence 33456888999999999988887663 443 455555432 4455533 321110 00
Q ss_pred CCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---hcCcEEEEeccCC
Q 001912 289 RFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---KVKRIVLLSGTPS 357 (997)
Q Consensus 289 ~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~~~~~llLTGTPi 357 (997)
-.++.+.+.+......+ .+.++||||=+=+.-+ +......+..+.. .....+.|++|--
T Consensus 245 ---v~~~~~~~~l~~al~~~--~~~D~VLIDTAGRs~~-----d~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 245 ---VHAVKDAADLRFALAAL--GDKHLVLIDTVGMSQR-----DRNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ---ccccCCHHHHHHHHHHh--cCCCEEEEeCCCCCcc-----CHHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 01222444454444444 3669999999876532 2333344443332 2345688889853
No 457
>PRK05580 primosome assembly protein PriA; Validated
Probab=59.37 E-value=33 Score=42.95 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEK-GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~-gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
.|.++||.+.....+..+.+.|... |..+..++|+++..+|.+...+.. .++..|+ ++|... .=+.+.....||+-
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~-~g~~~IV-VgTrsa-l~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAK-RGEAKVV-IGARSA-LFLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH-cCCCCEE-EeccHH-hcccccCCCEEEEE
Confidence 4778999999999988888888764 888999999999999988888776 5567774 444422 22455666777766
Q ss_pred cC
Q 001912 608 EL 609 (997)
Q Consensus 608 D~ 609 (997)
|-
T Consensus 266 Ee 267 (679)
T PRK05580 266 EE 267 (679)
T ss_pred CC
Confidence 53
No 458
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=59.11 E-value=4.2 Score=52.13 Aligned_cols=183 Identities=25% Similarity=0.396 Sum_probs=126.8
Q ss_pred cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCC----cccccCCCeEEEEehhHHHHHHH--------------
Q 001912 245 SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNN----PVHLTRFPRVVVISYTMLHRLRK-------------- 306 (997)
Q Consensus 245 p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~----~~~~~~~~~VvItTy~~l~~~~~-------------- 306 (997)
.+|||||.+++.||-.||.++.+.+. .+..+.|-.+. ...+ ..+|||+|||+.|+....
T Consensus 422 aTLII~P~aIl~QW~~EI~kH~~~~l--Kv~~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~q 498 (1394)
T KOG0298|consen 422 ATLIICPNAILMQWFEEIHKHISSLL--KVLLYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQ 498 (1394)
T ss_pred ceEEECcHHHHHHHHHHHHHhccccc--eEEEEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcc
Confidence 48999999999999999999998762 34444443221 1222 268999999999986421
Q ss_pred --------hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccc
Q 001912 307 --------SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGK 378 (997)
Q Consensus 307 --------~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~ 378 (997)
.|....|..||+|||+++.. ..++.++.+..+ .+.++|+.||||+++ +.|+|.++.||.-..|+.
T Consensus 499 sr~~~~~SPL~~v~wWRIclDEaQMves----ssS~~a~M~~rL--~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~ 571 (1394)
T KOG0298|consen 499 SRYMRPNSPLLMVNWWRICLDEAQMVES----SSSAAAEMVRRL--HAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCR 571 (1394)
T ss_pred cCCCCCCCchHHHHHHHHhhhHHHhhcc----hHHHHHHHHHHh--hhhceeeecCCchhh-hhhhHHHHHHhcCCCCCC
Confidence 24456899999999999964 334555555555 578899999999999 999999999998777877
Q ss_pred hhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhc--cCCCceEEEEEEecChhHHH
Q 001912 379 AKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLV--QLPPKRRQIIRLLLKRSEIV 452 (997)
Q Consensus 379 ~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~--~LP~k~~~~i~~~l~~~q~~ 452 (997)
.. +|.+...... ........++.++.+ .+=|+.|.+|.. .+||..+.+....+++.+..
T Consensus 572 ~~-~~iq~v~~~~-------------~~ra~~~~~~dl~~q-~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~ 632 (1394)
T KOG0298|consen 572 PQ-DFIQTVDKAY-------------QLRAKCEPLLDLFKQ-LLWRTFKSKVEHELGLPPQTEVVHRLELSAVESH 632 (1394)
T ss_pred hH-HHHHHHHHHH-------------HHHhhhhhHHHHHHh-hhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhh
Confidence 54 4554332211 111334556667764 677888887765 46776555555555554433
No 459
>PRK04132 replication factor C small subunit; Provisional
Probab=59.06 E-value=43 Score=42.64 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=27.4
Q ss_pred cccEEEeccccccccCCCCCcHHHHHHHHHHHhh--cCcEEEEeccCCC
Q 001912 312 DWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--VKRIVLLSGTPSL 358 (997)
Q Consensus 312 ~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~~~~llLTGTPi~ 358 (997)
++.+||+||+|++- .....++.++... ..-+++|+.++..
T Consensus 630 ~~KVvIIDEaD~Lt-------~~AQnALLk~lEep~~~~~FILi~N~~~ 671 (846)
T PRK04132 630 SFKIIFLDEADALT-------QDAQQALRRTMEMFSSNVRFILSCNYSS 671 (846)
T ss_pred CCEEEEEECcccCC-------HHHHHHHHHHhhCCCCCeEEEEEeCChh
Confidence 57899999999993 3445667776653 3446777776653
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=58.78 E-value=27 Score=44.90 Aligned_cols=96 Identities=16% Similarity=0.304 Sum_probs=53.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
..|+.-++|.|||..|-+++..+......+|-+-.+-..+. ..+.++. |... . -+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~-~~~~~l~------------g~~~---------g--yvg 596 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK-HTVSKLI------------GSPP---------G--YVG 596 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc-ccHHHhc------------CCCC---------c--ccC
Confidence 36899999999999999999887654433443332211000 0011111 1000 0 012
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
|+........+...++.+|++||++.+- ......+..+..
T Consensus 597 ~~~~~~l~~~~~~~p~~VvllDeieka~-------~~v~~~Llq~le 636 (821)
T CHL00095 597 YNEGGQLTEAVRKKPYTVVLFDEIEKAH-------PDIFNLLLQILD 636 (821)
T ss_pred cCccchHHHHHHhCCCeEEEECChhhCC-------HHHHHHHHHHhc
Confidence 3322233445556788999999999772 445666666654
No 461
>PRK08939 primosomal protein DnaI; Reviewed
Probab=58.43 E-value=26 Score=39.27 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEeCcchH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAILR 255 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~P~sL~ 255 (997)
+.+.+|.-++|+|||..+.|++..+...|. +++|.-..++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 346788889999999999999998877664 5544333333
No 462
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=58.29 E-value=1.2e+02 Score=31.46 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=27.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAI 253 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~s 253 (997)
-..|.-+.|+|||..++.++...... .+++.|.-..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 35688899999999999887766444 4677776654
No 463
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=57.75 E-value=16 Score=43.71 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=35.5
Q ss_pred cChhhHHHHHHHHHhcCCC-eEEEcCCCchHHHHHHHHHHHHhhCCc
Q 001912 200 VILPFQLEGVRFGLRRGGR-CLIADEMGLGKTLQAIAIAACFISAGS 245 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~-~ILaDemGLGKTlqaial~~~~~~~gp 245 (997)
-+-|.|.+.+.+++....| ++++-++|+|||-+.-+++..+...+.
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~ 271 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPER 271 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCC
Confidence 3578899999988876555 679999999999999887776544333
No 464
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=57.69 E-value=55 Score=42.17 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
.++.-++|.|||..|-+++..+......+|...
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 689999999999999999888765544444443
No 465
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=57.64 E-value=81 Score=30.86 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=57.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeE--EEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecC
Q 001912 532 KMIIFAHHLKVLDGVQEFISEKGIGF--VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609 (997)
Q Consensus 532 KvLVFs~~~~~ld~L~~~L~~~gi~~--~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~ 609 (997)
.|=++||.-.+...+.+.+..+|+.+ +.=.|....-.=.++++.|.++++++++ ++++|.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I------------------~ly~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVI------------------VLYLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EE------------------EEEES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEE------------------EEEccC
Confidence 46789999999999999999987764 5556766555677899999999999884 456666
Q ss_pred CCCccHHhhHHHhhhhcCCCCeEEEEEEe
Q 001912 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFC 638 (997)
Q Consensus 610 ~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li 638 (997)
--||..+.++.-|+.|. |+|.+|+--
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 67888899988888763 888887753
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=57.47 E-value=19 Score=39.01 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=20.0
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+|.+++|--+.|.|||..+-.++..+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457788888889999997665555443
No 467
>PRK10865 protein disaggregation chaperone; Provisional
Probab=57.46 E-value=54 Score=42.25 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILV 248 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LI 248 (997)
..++.-++|+|||..|-+++..+...+..+|
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i 630 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMV 630 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 4789999999999999999887665443333
No 468
>PRK13531 regulatory ATPase RavA; Provisional
Probab=57.39 E-value=18 Score=42.79 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp 245 (997)
+++-.+.+.-++..++.+||-+++|+|||..|-+++......++
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~ 68 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARA 68 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCc
Confidence 34555555555666889999999999999999998876544333
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=56.69 E-value=50 Score=39.61 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH-hh-CCcEEEEeCcchHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACF-IS-AGSILVVCPAILRLSWAEELERW 265 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~-~~-~gp~LIV~P~sL~~qW~~Ei~k~ 265 (997)
|.-.+|.-++|+|||+-|+-++..- .+ ..++|.|+=..-..++.+.+..+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 4457899999999999999887764 33 45889998766666666666655
No 470
>PRK06620 hypothetical protein; Validated
Probab=56.61 E-value=74 Score=33.58 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.1
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAA 238 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~ 238 (997)
..+|.-+.|+|||-.+-+++.
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 478999999999998876444
No 471
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=56.58 E-value=88 Score=37.12 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..|+.-+.|.|||..|.+++..+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999988754
No 472
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=56.24 E-value=14 Score=41.38 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=38.7
Q ss_pred CChhhhccChhhHHHHHH-HHHhc----CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 193 LPKSLLDVILPFQLEGVR-FGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 193 lp~~l~~~L~pyQ~~gV~-~~l~~----~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
++.++..+...--..||- .|++. |.++|++-++|+|||..|++++..+-..-|+.=+.-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgs 101 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGS 101 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccc
Confidence 444555433333333332 24443 3468899999999999999999998777776544443
No 473
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=59 Score=37.41 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHh------cCCCeEEEcCCCchHHHHHHHHHHHHhhCCc----EEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 202 LPFQLEGVRFGLR------RGGRCLIADEMGLGKTLQAIAIAACFISAGS----ILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 202 ~pyQ~~gV~~~l~------~~g~~ILaDemGLGKTlqaial~~~~~~~gp----~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
|+-|.+-+...+. ...++++.-.+|+|||.++--++..+....+ +=|=|.. ....+-..++.+-+..
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~-- 99 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK-- 99 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC--
Confidence 5667766665332 2336889999999999999998888765432 2222222 2333333333332210
Q ss_pred CceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhh-ccccEEEecccccccc
Q 001912 271 PADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE-QDWALLIVDESHHVRC 326 (997)
Q Consensus 271 ~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~-~~~~~VIvDEaH~iKN 326 (997)
-+..-+.+-+.+....+.+.. ...-+||+||..++-.
T Consensus 100 -------------------~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 100 -------------------VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred -------------------CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 011122333444444444443 4677999999999853
No 474
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=55.32 E-value=37 Score=36.60 Aligned_cols=42 Identities=26% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWA 259 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~ 259 (997)
..++|+--++|+|||.+|=|++... .-|+|.|--+.|+....
T Consensus 151 PknVLFyGppGTGKTm~Akalane~--kvp~l~vkat~liGehV 192 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEA--KVPLLLVKATELIGEHV 192 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhccc--CCceEEechHHHHHHHh
Confidence 5578999999999999998887652 44666666666665543
No 475
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=54.91 E-value=66 Score=37.74 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCcchHHHHHH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPAILRLSWAE 260 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~sL~~qW~~ 260 (997)
.|.=.+|+-.+|.|||.-++.++.... ...+++++..-.-..+...
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 344478999999999999999886653 3568999986544444433
No 476
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=54.47 E-value=1.6e+02 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 203 PFQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+...+.+..+++.+. ..|+..+-|.|||..|.+++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 344444444554332 348999999999999999988764
No 477
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=53.66 E-value=50 Score=41.83 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=23.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
..+|.-++|+|||..|-+++..+ ..+++.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l--~~~~i~i 519 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKAL--GIELLRF 519 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCcEEe
Confidence 57899999999999999888876 3454444
No 478
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.64 E-value=92 Score=36.26 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=54.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccC-CCCcccccCCCeEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGH-RNNPVHLTRFPRVVVI 296 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~-~~~~~~~~~~~~VvIt 296 (997)
++++-=-|+|||-++.=++.++.+.+ ++|+|+--.-..--.+.++...... .+.++... ..++
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~---~v~~f~~~~~~~P------------ 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV---GVPFFGSGTEKDP------------ 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHc---CCceecCCCCCCH------------
Confidence 55666789999999999999988755 4677765543333334444432221 12222211 1111
Q ss_pred ehhHHHHHHHhhhhccccEEEeccccccc
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~iK 325 (997)
-+....-.+.+....+|+||||=|-++.
T Consensus 168 -v~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 168 -VEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred -HHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 1233444556666789999999998874
No 479
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=87 Score=33.51 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=54.1
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCC
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFP 291 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~ 291 (997)
+.+..|+||.-+.|.|||+.|-+++.+ ..-.+|=+.. .|+..+.-|-.+..
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahh---t~c~firvsgselvqk~igegsrmv------------------------- 229 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQKYIGEGSRMV------------------------- 229 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhh---cceEEEEechHHHHHHHhhhhHHHH-------------------------
Confidence 445778999999999999999888775 2223444433 45544433322211
Q ss_pred eEEEEehhHHHHHHHhhhhccccEEEeccccccccCC----CCCcHHHHHHHHHHH
Q 001912 292 RVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK----RTSEPEEVKAVLDVA 343 (997)
Q Consensus 292 ~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~----~~~~s~~~~al~~l~ 343 (997)
+.+.---....+..++.||...|.++. ++.++...+..+.+.
T Consensus 230 ----------relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlell 275 (404)
T KOG0728|consen 230 ----------RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELL 275 (404)
T ss_pred ----------HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHH
Confidence 111111123567889999999886522 234555555555554
No 480
>PF12846 AAA_10: AAA-like domain
Probab=53.20 E-value=17 Score=40.01 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=27.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCc-EEEEeCcc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGS-ILVVCPAI 253 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp-~LIV~P~s 253 (997)
+.+++.-.+|+|||..+..++..+...|. ++|+=|..
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g 39 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKG 39 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 45678888999999999888877766664 66665553
No 481
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=53.14 E-value=18 Score=40.47 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEE
Q 001912 205 QLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILV 248 (997)
Q Consensus 205 Q~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LI 248 (997)
+.+-+.++++.+++++++-++|+|||-..-+++..+.....+++
T Consensus 133 ~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ 176 (308)
T TIGR02788 133 IKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIIT 176 (308)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEE
Confidence 44556677888889999999999999988887766544444433
No 482
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=52.88 E-value=23 Score=45.46 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=67.5
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc--chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccC
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA--ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~--sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~ 289 (997)
+....|+++..+.|+|||++|-+++....... ++..-.-. ..+.-|
T Consensus 296 itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskw------------------------------- 344 (1080)
T KOG0732|consen 296 ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKW------------------------------- 344 (1080)
T ss_pred cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccc-------------------------------
Confidence 34456789999999999999998887643321 12111111 111111
Q ss_pred CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCC----CcHHHHHHHHHHHhh---cCcEEEEeccCCCCChh
Q 001912 290 FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRT----SEPEEVKAVLDVAAK---VKRIVLLSGTPSLSRPY 362 (997)
Q Consensus 290 ~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~----~~s~~~~al~~l~~~---~~~~llLTGTPi~n~~~ 362 (997)
|--.-..++-+.+......+.++.+||..-+.-..+. ..+.....++.+... -..++++.||+- +.
T Consensus 345 ----vgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR---pd 417 (1080)
T KOG0732|consen 345 ----VGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR---PD 417 (1080)
T ss_pred ----cCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC---cc
Confidence 1122223444555666788999999999855321111 112223344444332 345788888843 33
Q ss_pred HHHHHHHhhccCCccc
Q 001912 363 DIFHQINMLWPGLLGK 378 (997)
Q Consensus 363 El~~ll~~l~p~~~~~ 378 (997)
.+...+. +|+.|..
T Consensus 418 a~dpaLR--RPgrfdr 431 (1080)
T KOG0732|consen 418 AIDPALR--RPGRFDR 431 (1080)
T ss_pred ccchhhc--CCcccce
Confidence 3334333 4676654
No 483
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=52.81 E-value=1.1e+02 Score=28.93 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=49.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEE-EEccCCCCcccccCCCeEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIH-LVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~-~~~g~~~~~~~~~~~~~VvIt 296 (997)
.++.-..|.|||..+..++..+...+ ++++|--.. ..+.+++..+.... .. +..+..... . . ..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~~~----~~~i~~g~~~~~-~---~-g~~~~ 70 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVGEI----KLLLVMGMGRPG-G---E-GCYCP 70 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccCCc----eEEEEecccccC-C---C-CCEeh
Confidence 45677799999999999988876655 455444222 44444444443211 11 222222110 0 0 01111
Q ss_pred ehhHHHHHHHhhhhccccEEEecccccc
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~i 324 (997)
.-..+......+....++++|+|=...+
T Consensus 71 ~n~~~~~~l~~~~~~~~~~vivDt~ag~ 98 (116)
T cd02034 71 ENALLNALLRHLVLTRDEQVVVDTEAGL 98 (116)
T ss_pred hhHHHHHHHHHeEccCCCEEEEecHHHH
Confidence 1124445555555577889999865443
No 484
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=52.17 E-value=41 Score=37.99 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHHHHhhCC-cE---------------EEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccC
Q 001912 226 GLGKTLQAIAIAACFISAG-SI---------------LVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTR 289 (997)
Q Consensus 226 GLGKTlqaial~~~~~~~g-p~---------------LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~ 289 (997)
|+|||=.+++++..+...| ++ ++|.+.+....--+|-..... .
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~---------------------~ 105 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLAR---------------------K 105 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHH---------------------h
Confidence 8999999999999987764 33 333333322222222111100 0
Q ss_pred CCeEEEEehhHHHHHHHhhhhccccEEEeccccc
Q 001912 290 FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHH 323 (997)
Q Consensus 290 ~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~ 323 (997)
..-.|++..+........+.....++||+|.+..
T Consensus 106 ~~~~V~V~~dR~~~~~~~~~~~~~dviilDDGfQ 139 (326)
T PF02606_consen 106 LPVPVIVGPDRVAAARAALKEFPADVIILDDGFQ 139 (326)
T ss_pred cCCcEEEeCcHHHHHHHHHHHCCCCEEEEcCCcc
Confidence 1123666666665555445545689999999864
No 485
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=51.96 E-value=38 Score=32.82 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=19.1
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAA 238 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~ 238 (997)
...+..++|.-|.|+||+..|-++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred hCCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 34466789999999999997755443
No 486
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=51.85 E-value=94 Score=32.05 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--cCcEEEEeccCCCCChhHHHHHHHh
Q 001912 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--VKRIVLLSGTPSLSRPYDIFHQINM 370 (997)
Q Consensus 305 ~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~~~~llLTGTPi~n~~~El~~ll~~ 370 (997)
...+....|++||+||--..-...--+ ...+..+... ...-+.+||.=.+..+.|+..++.-
T Consensus 115 ~~~l~~~~ydlviLDEl~~al~~g~l~----~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTE 178 (198)
T COG2109 115 KEALADGKYDLVILDELNYALRYGLLP----LEEVVALLKARPEHTHVIITGRGAPPELIELADLVTE 178 (198)
T ss_pred HHHHhCCCCCEEEEehhhHHHHcCCCC----HHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhh
Confidence 344556789999999987754322111 2333333321 2335899997665555555555543
No 487
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=51.62 E-value=14 Score=42.37 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=26.8
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCc
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLL 376 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~ 376 (997)
++.+++||||+-|.+.|+|++.+++.++.+
T Consensus 474 ~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 474 RALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 456899999999999999999999988754
No 488
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=51.38 E-value=1.4e+02 Score=33.70 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
...|+.-+.|.||+..|.+++..+.-..
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3678999999999999999998876543
No 489
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.34 E-value=1.2e+02 Score=37.60 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 206 LEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 206 ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.+.+..+++.|. ..|+.-+.|.|||-.|..++..+.
T Consensus 26 ~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 26 TTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444555432 368999999999998888887654
No 490
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=51.20 E-value=20 Score=37.68 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=21.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
.+|.-++|+|||-.|++++..+ .+|+++.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~--g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT--GAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH----EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHh--CCCEEEe
Confidence 3678899999999999999875 5665544
No 491
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=51.06 E-value=24 Score=35.90 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCccccc-CCCeE
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLT-RFPRV 293 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~-~~~~V 293 (997)
|-+.+---.|=|||-.|+.++......| +++||==. .-...=...+.+.++. +.+......-..... ...+
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~-----~~~~~~g~~f~~~~~~~~~~- 77 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPN-----VEIERFGKGFVWRMNEEEED- 77 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT-------EEEE--TT----GGGHHHH-
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCe-----EEEEEcCCcccccCCCcHHH-
Confidence 3455666789999999998877665544 66666322 2111112222233332 111111111000000 0001
Q ss_pred EEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh--cCcEEEEeccCCCCChhHHHHHHHh
Q 001912 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK--VKRIVLLSGTPSLSRPYDIFHQINM 370 (997)
Q Consensus 294 vItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~--~~~~llLTGTPi~n~~~El~~ll~~ 370 (997)
.-...+.+....+.+....||+||+||.-..-+..--. ...+..+... ..--+.|||-=. +.+|....++
T Consensus 78 ~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~----~~~v~~~l~~rp~~~evVlTGR~~---~~~l~e~ADl 149 (172)
T PF02572_consen 78 RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLS----EEEVLDLLENRPESLEVVLTGRNA---PEELIEAADL 149 (172)
T ss_dssp HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-----HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCcc----HHHHHHHHHcCCCCeEEEEECCCC---CHHHHHhCCe
Confidence 00001111122334555789999999998765433222 3334444332 334599999744 4555544443
No 492
>PTZ00033 60S ribosomal protein L24; Provisional
Probab=51.03 E-value=9.5 Score=36.02 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=37.4
Q ss_pred cccccccccccccCC---C----cccccccccChhhhHhHhhccchhHHHH-HHHHhhccc
Q 001912 905 LCKLCQKTCKSKNAK---N----AEYFEDLFCNLDCYEEYRLRTSGRFLRE-ELFRIEHGV 957 (997)
Q Consensus 905 lc~~c~~~~~~~~~~---~----~~~~~~~fc~~~c~~~~~~~~~~~~~r~-~~~~~~~g~ 957 (997)
+|-.|..++-+..+. . -++-.-.|||.+|...|.++.++..|+= .+|.+-||-
T Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~~~~~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK 65 (125)
T PTZ00033 5 ACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRK 65 (125)
T ss_pred EecCcCCcccCCCCcEeeecccCCCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCC
Confidence 677776654433221 1 3456789999999999999999998874 456666664
No 493
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=50.75 E-value=67 Score=40.74 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
..++.-++|+|||..|-+++..+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 36899999999999999988765
No 494
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=50.71 E-value=24 Score=40.18 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCC
Q 001912 211 FGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRF 290 (997)
Q Consensus 211 ~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~ 290 (997)
.+.+.+++++++-++|+|||-..-+++.......+++.|=... |+. ++.. ..+.+......
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~-------El~--l~~~--~~v~l~~~~~~-------- 217 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTL-------ELV--IPHE--NHVRLLYSKNG-------- 217 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCc-------ccc--CCCC--CEEEEEeeccc--------
Confidence 3556677899999999999999988887665555555444332 211 1211 11222111100
Q ss_pred CeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHH
Q 001912 291 PRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 291 ~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~ 369 (997)
...--.|++.+. ......+.|.||+.|.- +...+..+.... .-+ .+.=+|-.-+++.+.+..+.
T Consensus 218 ~~~~~~t~~~ll---~~~LR~~pD~IivGEiR---------~~ea~~~l~a~~--tGh-~G~ltTiHa~s~~~a~~Rl~ 281 (344)
T PRK13851 218 AGLGAVTAEHLL---QASLRMRPDRILLGEMR---------DDAAWAYLSEVV--SGH-PGSISTIHGANPVQGFKKLF 281 (344)
T ss_pred cCcCccCHHHHH---HHHhcCCCCeEEEEeeC---------cHHHHHHHHHHH--hCC-CcEEECCCCCCHHHHHHHHH
Confidence 000122443332 23335789999999985 233344443332 222 22224556677777665554
No 495
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.61 E-value=1.1e+02 Score=36.40 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh-hCC--cEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI-SAG--SILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~-~~g--p~LIV~ 250 (997)
|+-..|.-..|.|||.++.-++..+. ..| ++.+|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 43345778999999999998887764 333 454443
No 496
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=50.10 E-value=21 Score=38.95 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSI 246 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~ 246 (997)
|..++||-++|+|||..|++++..+-..-|+
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPF 94 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPF 94 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCc
Confidence 4568899999999999999999886554454
No 497
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.05 E-value=34 Score=40.45 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHHHhcCCC-eEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 201 ILPFQLEGVRFGLRRGGR-CLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~-~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
+.|+|...+..++.+..| .|+.-++|+|||.+.-+++..+....
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 478888888888876555 55778999999999998888765433
No 498
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=50.02 E-value=29 Score=41.66 Aligned_cols=65 Identities=29% Similarity=0.363 Sum_probs=43.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-------hCCcEEEEeCcchHHHHHHHHHHHCCCC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-------SAGSILVVCPAILRLSWAEELERWLPFC 269 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-------~~gp~LIV~P~sL~~qW~~Ei~k~~p~~ 269 (997)
++-+-|-+.+++- +++-.|+--..|+|||-.|+-=.++++ ..+++||+.|+-+.... +..-+|.+
T Consensus 212 TIQkEQneIIR~e--k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY---is~VLPeL 283 (747)
T COG3973 212 TIQKEQNEIIRFE--KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY---ISRVLPEL 283 (747)
T ss_pred HhhHhHHHHHhcc--CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHH---HHHhchhh
Confidence 5556666666542 245567778899999999986444443 24579999999876555 34445544
No 499
>PF12156 ATPase-cat_bd: Putative metal-binding domain of cation transport ATPase; InterPro: IPR021993 This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with PF00403 from PFAM, PF00122 from PFAM, PF00702 from PFAM. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=49.71 E-value=10 Score=34.06 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.3
Q ss_pred cccccccccccccCCC--cccccccccChhhhHhHhhccc
Q 001912 905 LCKLCQKTCKSKNAKN--AEYFEDLFCNLDCYEEYRLRTS 942 (997)
Q Consensus 905 lc~~c~~~~~~~~~~~--~~~~~~~fc~~~c~~~~~~~~~ 942 (997)
-|-||..+++...... ..+.+..||..-|+.+|.+=.+
T Consensus 2 ~C~HCg~~~p~~~~~~~~~~g~~~~FCC~GC~~V~~~i~~ 41 (88)
T PF12156_consen 2 KCYHCGLPVPEGAKITVEIDGEERPFCCPGCQAVYQLIHE 41 (88)
T ss_pred CCCCCCCCCCCCCCeeeeeCCCccccccHHHHHHHHHHHH
Confidence 4999999997443332 2345689999999998876443
No 500
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.50 E-value=1.2e+02 Score=36.25 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=19.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~ 241 (997)
.|+.-+.|.|||..|..++..+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999998888754
Done!