Query 001912
Match_columns 997
No_of_seqs 506 out of 2682
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 2.5E-68 8.6E-73 651.8 26.4 468 193-682 48-569 (644)
2 3mwy_W Chromo domain-containin 100.0 6.5E-66 2.2E-70 645.8 25.7 429 198-665 234-708 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 7.1E-62 2.4E-66 580.4 30.4 444 194-682 31-494 (500)
4 3dmq_A RNA polymerase-associat 100.0 3.2E-48 1.1E-52 492.6 26.7 445 198-679 151-653 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 5E-42 1.7E-46 405.0 27.6 418 200-659 9-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 2.9E-38 9.8E-43 373.8 20.8 363 199-656 92-469 (472)
7 4a2p_A RIG-I, retinoic acid in 100.0 1.5E-34 5.2E-39 348.5 23.3 422 200-662 7-528 (556)
8 3tbk_A RIG-I helicase domain; 100.0 7.1E-34 2.4E-38 342.2 28.0 406 200-646 4-512 (555)
9 1z5z_A Helicase of the SNF2/RA 100.0 1.8E-35 6E-40 322.3 12.6 247 422-682 13-265 (271)
10 4a2w_A RIG-I, retinoic acid in 100.0 4.4E-34 1.5E-38 362.5 24.6 428 198-662 246-769 (936)
11 4a2q_A RIG-I, retinoic acid in 100.0 4.1E-34 1.4E-38 358.8 22.8 428 198-662 246-769 (797)
12 2oca_A DAR protein, ATP-depend 100.0 5.8E-33 2E-37 331.6 28.2 343 199-647 112-464 (510)
13 4gl2_A Interferon-induced heli 100.0 2.7E-32 9.4E-37 338.3 27.2 405 200-648 7-526 (699)
14 2ykg_A Probable ATP-dependent 100.0 6.4E-32 2.2E-36 334.9 21.4 413 198-646 11-521 (696)
15 1xti_A Probable ATP-dependent 100.0 4.3E-30 1.5E-34 295.4 29.6 329 199-654 29-369 (391)
16 1hv8_A Putative ATP-dependent 100.0 1.5E-29 5.3E-34 287.7 30.4 311 199-641 27-345 (367)
17 3h1t_A Type I site-specific re 100.0 1.5E-30 5.2E-35 316.2 22.7 349 198-638 176-558 (590)
18 2z0m_A 337AA long hypothetical 100.0 1E-29 3.4E-34 285.9 25.8 316 199-652 15-335 (337)
19 1s2m_A Putative ATP-dependent 100.0 1.2E-28 4.2E-33 284.4 33.3 310 199-641 42-365 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 3E-29 1E-33 290.6 28.0 316 199-641 58-383 (410)
21 3pey_A ATP-dependent RNA helic 100.0 1.3E-28 4.6E-33 282.8 32.0 313 199-635 26-352 (395)
22 3fht_A ATP-dependent RNA helic 100.0 7.9E-28 2.7E-32 278.4 34.5 331 199-654 46-391 (412)
23 3eiq_A Eukaryotic initiation f 100.0 1.1E-28 3.7E-33 286.0 22.5 316 199-641 61-387 (414)
24 1fuu_A Yeast initiation factor 100.0 3.6E-29 1.2E-33 287.9 14.0 315 199-641 42-366 (394)
25 2db3_A ATP-dependent RNA helic 100.0 5.8E-27 2E-31 273.7 32.2 310 199-635 77-403 (434)
26 2i4i_A ATP-dependent RNA helic 100.0 2.4E-27 8.3E-32 275.0 27.9 316 199-641 36-383 (417)
27 3oiy_A Reverse gyrase helicase 99.9 7.1E-27 2.4E-31 271.3 24.4 322 198-658 19-378 (414)
28 1oyw_A RECQ helicase, ATP-depe 99.9 2.1E-26 7.2E-31 274.5 24.2 304 199-635 24-339 (523)
29 2v1x_A ATP-dependent DNA helic 99.9 8.3E-26 2.8E-30 272.3 28.2 309 199-635 43-370 (591)
30 3sqw_A ATP-dependent RNA helic 99.9 1.1E-25 3.8E-30 272.6 26.8 337 199-653 42-408 (579)
31 3i5x_A ATP-dependent RNA helic 99.9 2.2E-25 7.4E-30 269.4 27.3 337 199-653 93-459 (563)
32 2eyq_A TRCF, transcription-rep 99.9 7E-26 2.4E-30 291.4 23.5 337 200-681 603-962 (1151)
33 3fho_A ATP-dependent RNA helic 99.9 3.1E-26 1.1E-30 272.8 18.0 313 199-635 140-466 (508)
34 3fmp_B ATP-dependent RNA helic 99.9 3.3E-26 1.1E-30 270.9 16.3 313 199-633 113-440 (479)
35 2xgj_A ATP-dependent RNA helic 99.9 7.4E-24 2.5E-28 268.7 32.4 360 200-651 86-509 (1010)
36 1gm5_A RECG; helicase, replica 99.9 3.1E-25 1.1E-29 273.0 13.4 338 200-681 368-731 (780)
37 2p6r_A Afuhel308 helicase; pro 99.9 1.2E-23 4E-28 260.6 26.7 324 199-644 24-391 (702)
38 2zj8_A DNA helicase, putative 99.9 2E-23 7E-28 259.1 28.2 324 199-645 22-391 (720)
39 3l9o_A ATP-dependent RNA helic 99.9 4.4E-23 1.5E-27 263.8 29.2 377 199-654 183-610 (1108)
40 2va8_A SSO2462, SKI2-type heli 99.9 1.6E-22 5.4E-27 251.1 33.3 329 199-642 29-409 (715)
41 4a4z_A Antiviral helicase SKI2 99.9 5.5E-22 1.9E-26 251.7 32.8 404 197-650 36-501 (997)
42 4ddu_A Reverse gyrase; topoiso 99.9 7.9E-21 2.7E-25 243.0 24.9 319 200-658 78-505 (1104)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.5E-20 5.2E-25 237.1 25.6 148 199-359 270-441 (1038)
44 3hgt_A HDA1 complex subunit 3; 99.8 6E-21 2.1E-25 207.7 12.9 117 527-650 122-246 (328)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 1.5E-19 5E-24 231.4 20.5 312 201-657 58-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.8 6.2E-19 2.1E-23 205.2 18.2 95 530-630 171-281 (431)
47 1rif_A DAR protein, DNA helica 99.8 3.3E-19 1.1E-23 195.7 13.8 163 200-373 113-278 (282)
48 2jlq_A Serine protease subunit 99.8 2.4E-19 8.3E-24 210.0 10.8 94 530-630 188-301 (451)
49 2z83_A Helicase/nucleoside tri 99.8 2.8E-18 9.4E-23 201.4 15.9 104 530-641 190-313 (459)
50 1yks_A Genome polyprotein [con 99.8 3.3E-18 1.1E-22 199.5 16.2 94 530-630 177-289 (440)
51 2wv9_A Flavivirin protease NS2 99.8 3.9E-18 1.3E-22 207.5 16.1 95 529-630 409-523 (673)
52 4f92_B U5 small nuclear ribonu 99.8 6.4E-17 2.2E-21 214.1 28.2 161 199-366 78-262 (1724)
53 2whx_A Serine protease/ntpase/ 99.7 1.3E-17 4.5E-22 201.5 17.6 117 530-654 355-492 (618)
54 4f92_B U5 small nuclear ribonu 99.7 8.6E-17 3E-21 212.9 26.5 164 199-368 925-1103(1724)
55 3rc3_A ATP-dependent RNA helic 99.7 9.6E-17 3.3E-21 194.7 22.6 106 533-640 323-444 (677)
56 2xau_A PRE-mRNA-splicing facto 99.7 6.7E-17 2.3E-21 200.2 21.1 309 201-643 94-445 (773)
57 3o8b_A HCV NS3 protease/helica 99.7 1.8E-17 6E-22 198.9 14.2 276 201-644 218-517 (666)
58 2fz4_A DNA repair protein RAD2 99.7 4.1E-17 1.4E-21 174.2 14.9 139 199-360 92-232 (237)
59 1tf5_A Preprotein translocase 99.7 3.4E-16 1.2E-20 189.3 22.0 99 529-631 431-537 (844)
60 2hjv_A ATP-dependent RNA helic 99.7 1.2E-16 4.1E-21 160.4 14.0 119 529-653 34-152 (163)
61 1t5i_A C_terminal domain of A 99.7 1.3E-16 4.5E-21 161.5 13.7 104 529-634 30-133 (172)
62 2fsf_A Preprotein translocase 99.7 3.7E-16 1.3E-20 188.4 18.1 100 528-631 439-575 (853)
63 1nkt_A Preprotein translocase 99.7 1.4E-15 4.9E-20 183.4 22.5 100 528-631 458-609 (922)
64 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.4E-16 4.7E-21 163.4 11.2 109 529-641 45-153 (185)
65 2p6n_A ATP-dependent RNA helic 99.7 3.1E-16 1.1E-20 161.5 11.9 108 530-641 54-161 (191)
66 3b6e_A Interferon-induced heli 99.6 4.8E-16 1.6E-20 162.7 12.8 129 194-325 27-175 (216)
67 1fuk_A Eukaryotic initiation f 99.6 6.2E-16 2.1E-20 155.5 12.2 111 529-643 29-139 (165)
68 2rb4_A ATP-dependent RNA helic 99.6 2.1E-15 7.1E-20 153.2 14.1 110 529-642 33-148 (175)
69 2gxq_A Heat resistant RNA depe 99.6 9.9E-16 3.4E-20 159.5 10.2 152 199-357 22-186 (207)
70 2yjt_D ATP-dependent RNA helic 99.4 6.5E-17 2.2E-21 163.5 0.0 104 529-634 29-132 (170)
71 1t6n_A Probable ATP-dependent 99.6 4.8E-15 1.6E-19 156.1 14.1 157 199-358 35-202 (220)
72 1c4o_A DNA nucleotide excision 99.6 3.1E-13 1E-17 165.0 31.6 109 529-642 438-551 (664)
73 1q0u_A Bstdead; DEAD protein, 99.6 9.4E-15 3.2E-19 153.8 15.7 154 199-356 25-191 (219)
74 3eaq_A Heat resistant RNA depe 99.6 5.6E-15 1.9E-19 154.8 13.8 120 529-654 30-149 (212)
75 1vec_A ATP-dependent RNA helic 99.6 1.4E-14 4.7E-19 150.8 16.1 155 199-357 24-188 (206)
76 2pl3_A Probable ATP-dependent 99.6 1.1E-14 3.8E-19 155.1 15.1 154 199-357 46-213 (236)
77 2oxc_A Probable ATP-dependent 99.6 2.3E-14 7.7E-19 152.2 16.5 155 199-356 45-208 (230)
78 1qde_A EIF4A, translation init 99.6 2.5E-14 8.5E-19 150.9 15.5 154 199-357 35-197 (224)
79 3bor_A Human initiation factor 99.5 5.3E-14 1.8E-18 150.0 15.0 154 199-357 51-215 (237)
80 3jux_A Protein translocase sub 99.5 6.2E-13 2.1E-17 157.2 24.9 100 529-632 473-580 (822)
81 3ber_A Probable ATP-dependent 99.5 3.2E-14 1.1E-18 152.9 12.3 154 199-357 64-228 (249)
82 1wrb_A DJVLGB; RNA helicase, D 99.5 5.9E-14 2E-18 151.1 13.7 154 199-357 44-220 (253)
83 3iuy_A Probable ATP-dependent 99.5 1E-13 3.5E-18 146.7 13.7 152 199-356 41-208 (228)
84 3i32_A Heat resistant RNA depe 99.5 9.2E-14 3.1E-18 152.8 11.7 118 530-653 28-145 (300)
85 3ly5_A ATP-dependent RNA helic 99.5 3.4E-13 1.2E-17 146.1 14.3 154 199-357 75-243 (262)
86 3dkp_A Probable ATP-dependent 99.5 4.2E-13 1.4E-17 143.7 14.6 156 199-356 50-220 (245)
87 3fe2_A Probable ATP-dependent 99.4 4.4E-13 1.5E-17 143.3 11.5 153 199-356 50-217 (242)
88 3fmo_B ATP-dependent RNA helic 99.4 3.4E-12 1.2E-16 140.9 15.6 157 199-357 113-278 (300)
89 2ipc_A Preprotein translocase 99.2 1.3E-09 4.5E-14 131.4 23.4 144 200-369 79-240 (997)
90 2d7d_A Uvrabc system protein B 99.0 2E-09 6.8E-14 131.3 14.6 110 528-642 443-557 (661)
91 3llm_A ATP-dependent RNA helic 98.9 1.5E-08 5.1E-13 107.5 16.2 150 200-358 61-220 (235)
92 3crv_A XPD/RAD3 related DNA he 98.6 6.5E-08 2.2E-12 115.8 10.6 124 200-326 3-187 (551)
93 2vl7_A XPD; helicase, unknown 98.6 1.4E-07 4.9E-12 112.5 11.8 79 529-614 383-466 (540)
94 4a15_A XPD helicase, ATP-depen 98.1 4.9E-06 1.7E-10 100.6 8.7 67 200-266 3-75 (620)
95 4b3f_X DNA-binding protein smu 97.4 0.00054 1.8E-08 83.4 12.3 67 199-265 188-256 (646)
96 2gk6_A Regulator of nonsense t 97.0 0.0021 7.2E-08 77.8 12.0 144 199-359 179-376 (624)
97 3upu_A ATP-dependent DNA helic 97.0 0.0022 7.4E-08 74.6 11.2 131 198-359 23-167 (459)
98 3e1s_A Exodeoxyribonuclease V, 97.0 0.0035 1.2E-07 74.8 13.2 131 198-359 187-318 (574)
99 2xzl_A ATP-dependent helicase 96.9 0.003 1E-07 78.4 11.8 143 199-359 359-554 (802)
100 1w36_D RECD, exodeoxyribonucle 96.8 0.0037 1.3E-07 75.3 10.7 145 202-361 151-303 (608)
101 2o0j_A Terminase, DNA packagin 96.8 0.015 5.3E-07 65.3 15.0 154 200-369 163-324 (385)
102 2wjy_A Regulator of nonsense t 96.8 0.0035 1.2E-07 77.7 10.6 65 199-264 355-422 (800)
103 3lfu_A DNA helicase II; SF1 he 96.7 0.061 2.1E-06 65.1 21.6 67 198-267 7-79 (647)
104 3cpe_A Terminase, DNA packagin 96.3 0.035 1.2E-06 66.5 15.1 148 200-359 163-316 (592)
105 2b8t_A Thymidine kinase; deoxy 95.8 0.029 9.7E-07 58.3 9.8 111 216-355 12-124 (223)
106 2j9r_A Thymidine kinase; TK1, 95.8 0.019 6.4E-07 59.0 8.2 33 220-252 32-65 (214)
107 2vl7_A XPD; helicase, unknown 95.7 0.015 5E-07 69.1 8.0 64 200-265 7-74 (540)
108 1xx6_A Thymidine kinase; NESG, 95.7 0.032 1.1E-06 56.5 9.3 34 219-252 11-45 (191)
109 2orv_A Thymidine kinase; TP4A 95.4 0.054 1.9E-06 56.1 9.9 34 219-252 22-56 (234)
110 2orw_A Thymidine kinase; TMTK, 95.3 0.019 6.5E-07 57.8 6.2 34 219-252 6-40 (184)
111 3vkw_A Replicase large subunit 95.0 0.028 9.6E-07 64.1 7.0 108 219-359 164-272 (446)
112 3syl_A Protein CBBX; photosynt 93.5 0.16 5.5E-06 55.0 8.7 25 218-242 69-93 (309)
113 4b4t_J 26S protease regulatory 93.1 0.24 8.3E-06 55.7 9.4 76 214-326 180-255 (405)
114 3e2i_A Thymidine kinase; Zn-bi 93.1 0.53 1.8E-05 48.1 11.1 34 219-252 31-65 (219)
115 2p65_A Hypothetical protein PF 93.1 0.34 1.2E-05 47.5 9.7 27 216-242 43-69 (187)
116 1l8q_A Chromosomal replication 92.5 0.9 3.1E-05 49.5 13.1 46 217-262 38-84 (324)
117 1jbk_A CLPB protein; beta barr 92.5 0.39 1.3E-05 47.2 9.1 27 216-242 43-69 (195)
118 1a5t_A Delta prime, HOLB; zinc 92.5 1.2 4.1E-05 48.9 14.0 42 201-242 3-50 (334)
119 4a15_A XPD helicase, ATP-depen 92.2 0.22 7.4E-06 59.9 8.1 77 530-611 448-527 (620)
120 1w4r_A Thymidine kinase; type 91.7 0.68 2.3E-05 46.6 9.6 34 219-252 23-57 (195)
121 2qp9_X Vacuolar protein sortin 91.4 0.34 1.2E-05 53.9 7.9 35 216-252 84-118 (355)
122 3vfd_A Spastin; ATPase, microt 91.3 0.6 2.1E-05 52.5 10.1 39 216-256 148-186 (389)
123 3co5_A Putative two-component 91.2 0.23 7.8E-06 47.4 5.5 27 213-239 24-50 (143)
124 3h4m_A Proteasome-activating n 91.2 0.45 1.5E-05 50.8 8.5 36 214-251 49-84 (285)
125 2d7d_A Uvrabc system protein B 91.0 0.43 1.5E-05 57.8 8.9 67 200-268 12-83 (661)
126 3eie_A Vacuolar protein sortin 91.0 0.33 1.1E-05 53.2 7.3 37 217-255 52-88 (322)
127 1xwi_A SKD1 protein; VPS4B, AA 90.4 0.42 1.4E-05 52.4 7.4 35 217-252 46-80 (322)
128 4b4t_I 26S protease regulatory 90.4 1 3.4E-05 51.0 10.5 74 216-326 216-289 (437)
129 4b4t_L 26S protease subunit RP 90.0 0.98 3.3E-05 51.5 10.2 74 216-326 215-288 (437)
130 2r2a_A Uncharacterized protein 90.0 1.1 3.7E-05 45.4 9.5 33 219-251 8-46 (199)
131 3ec2_A DNA replication protein 90.0 0.49 1.7E-05 46.7 6.9 58 203-260 17-84 (180)
132 4b4t_H 26S protease regulatory 89.8 0.62 2.1E-05 53.2 8.3 77 213-326 240-316 (467)
133 1ofh_A ATP-dependent HSL prote 89.8 2.2 7.6E-05 45.6 12.6 33 216-250 50-82 (310)
134 2dr3_A UPF0273 protein PH0284; 89.7 1.5 5.2E-05 45.2 10.9 50 214-263 21-71 (247)
135 3d8b_A Fidgetin-like protein 1 89.3 0.57 2E-05 52.1 7.5 35 216-252 117-151 (357)
136 2bjv_A PSP operon transcriptio 89.1 2.2 7.7E-05 44.8 11.7 43 212-254 25-68 (265)
137 2zan_A Vacuolar protein sortin 88.9 0.77 2.6E-05 52.7 8.4 39 217-256 168-206 (444)
138 2w0m_A SSO2452; RECA, SSPF, un 88.5 4.6 0.00016 40.9 13.3 48 215-262 22-70 (235)
139 4b4t_K 26S protease regulatory 88.3 1.1 3.6E-05 51.1 8.9 41 216-258 206-246 (428)
140 3k1j_A LON protease, ATP-depen 88.2 3.1 0.0001 49.7 13.3 54 204-257 48-116 (604)
141 3bos_A Putative DNA replicatio 87.8 1.2 3.9E-05 45.7 8.2 29 216-244 52-80 (242)
142 2chg_A Replication factor C sm 87.8 6 0.0002 39.4 13.6 38 204-241 24-63 (226)
143 3uk6_A RUVB-like 2; hexameric 87.6 1.8 6.3E-05 47.8 10.3 36 217-252 71-106 (368)
144 2l8e_A Polyhomeotic-like prote 87.5 0.24 8.3E-06 37.8 2.0 33 901-937 16-48 (49)
145 2qby_B CDC6 homolog 3, cell di 86.8 1.1 3.7E-05 49.9 7.8 26 216-241 45-70 (384)
146 3n70_A Transport activator; si 86.6 0.73 2.5E-05 43.8 5.4 35 213-247 21-56 (145)
147 2w58_A DNAI, primosome compone 86.6 2.6 8.9E-05 42.1 9.8 34 217-250 55-89 (202)
148 3u61_B DNA polymerase accessor 86.1 3.5 0.00012 44.7 11.3 37 204-240 33-72 (324)
149 1njg_A DNA polymerase III subu 85.8 3.3 0.00011 42.0 10.4 40 203-242 29-71 (250)
150 3cf0_A Transitional endoplasmi 85.7 1 3.6E-05 48.6 6.7 42 213-256 46-87 (301)
151 2qz4_A Paraplegin; AAA+, SPG7, 85.6 0.86 2.9E-05 47.7 5.9 36 215-252 38-73 (262)
152 2v1u_A Cell division control p 85.6 3.1 0.00011 46.0 10.8 27 216-242 44-70 (387)
153 1sxj_D Activator 1 41 kDa subu 85.5 3.5 0.00012 45.0 11.0 37 205-241 45-83 (353)
154 3t15_A Ribulose bisphosphate c 85.2 1.1 3.9E-05 48.1 6.7 37 217-255 37-73 (293)
155 1sxj_B Activator 1 37 kDa subu 85.0 3.1 0.0001 44.8 10.1 38 204-241 28-67 (323)
156 2z4s_A Chromosomal replication 85.0 7.1 0.00024 44.5 13.6 44 217-260 131-177 (440)
157 4fcw_A Chaperone protein CLPB; 84.8 1.8 6.2E-05 46.5 8.1 36 217-252 48-84 (311)
158 4b4t_M 26S protease regulatory 84.6 0.72 2.4E-05 52.6 4.8 74 216-326 215-288 (434)
159 1iqp_A RFCS; clamp loader, ext 84.0 7.5 0.00026 41.7 12.8 39 203-241 31-71 (327)
160 2kjq_A DNAA-related protein; s 83.8 2 6.7E-05 41.2 7.0 30 215-244 35-64 (149)
161 1d2n_A N-ethylmaleimide-sensit 83.6 4.5 0.00016 42.6 10.5 31 217-249 65-95 (272)
162 1fnn_A CDC6P, cell division co 82.8 8.6 0.00029 42.4 12.9 33 218-250 46-80 (389)
163 1ojl_A Transcriptional regulat 82.2 7 0.00024 42.1 11.4 41 214-254 23-64 (304)
164 2qby_A CDC6 homolog 1, cell di 82.1 3 0.0001 46.0 8.7 27 216-242 45-71 (386)
165 3hu3_A Transitional endoplasmi 82.1 2.3 7.8E-05 49.4 7.9 33 216-250 238-270 (489)
166 2ce7_A Cell division protein F 81.4 3.5 0.00012 47.5 9.0 33 216-250 49-81 (476)
167 1jr3_A DNA polymerase III subu 81.4 6.2 0.00021 43.4 11.0 38 204-241 23-63 (373)
168 1qvr_A CLPB protein; coiled co 81.3 4.4 0.00015 50.5 10.7 27 216-242 191-217 (854)
169 1sxj_A Activator 1 95 kDa subu 81.3 4.7 0.00016 47.1 10.3 36 217-254 78-113 (516)
170 2cvh_A DNA repair and recombin 80.4 3.4 0.00012 41.6 7.7 44 215-260 19-64 (220)
171 1nlf_A Regulatory protein REPA 79.4 24 0.00081 37.1 14.3 46 213-258 27-83 (279)
172 3b9p_A CG5977-PA, isoform A; A 78.9 2.2 7.6E-05 45.6 6.0 25 216-240 54-78 (297)
173 2gno_A DNA polymerase III, gam 78.9 15 0.00052 39.5 12.6 29 211-239 11-41 (305)
174 2qen_A Walker-type ATPase; unk 78.9 18 0.00062 38.9 13.6 38 202-239 17-54 (350)
175 3te6_A Regulatory protein SIR3 78.3 11 0.00038 40.8 11.3 41 202-242 25-71 (318)
176 1uaa_A REP helicase, protein ( 77.6 3 0.0001 50.5 7.2 65 200-267 2-72 (673)
177 3pvs_A Replication-associated 76.5 9.3 0.00032 43.6 10.6 23 218-240 52-74 (447)
178 3hjh_A Transcription-repair-co 76.2 9.3 0.00032 44.1 10.5 51 216-268 14-65 (483)
179 2q6t_A DNAB replication FORK h 76.0 6 0.0002 45.2 8.8 49 214-262 198-248 (444)
180 3pfi_A Holliday junction ATP-d 75.9 14 0.00049 39.9 11.6 23 217-239 56-78 (338)
181 3dm5_A SRP54, signal recogniti 75.6 6.7 0.00023 44.6 8.9 92 218-324 102-194 (443)
182 3pxi_A Negative regulator of g 75.6 4.8 0.00016 49.4 8.4 31 218-248 523-554 (758)
183 2chq_A Replication factor C sm 75.4 3.5 0.00012 44.2 6.3 24 218-241 40-63 (319)
184 1pjr_A PCRA; DNA repair, DNA r 75.1 2.6 9E-05 51.5 5.8 67 197-266 8-80 (724)
185 3bh0_A DNAB-like replicative h 74.5 28 0.00094 37.5 13.3 51 213-263 65-116 (315)
186 2r62_A Cell division protease 73.5 0.49 1.7E-05 50.0 -1.2 25 216-240 44-68 (268)
187 3cf2_A TER ATPase, transitiona 73.4 2.8 9.6E-05 51.4 5.4 74 216-326 511-584 (806)
188 1w5s_A Origin recognition comp 73.0 4.7 0.00016 45.0 6.9 25 218-242 52-78 (412)
189 1hqc_A RUVB; extended AAA-ATPa 72.8 18 0.00062 38.7 11.4 24 217-240 39-62 (324)
190 3kl4_A SRP54, signal recogniti 72.5 11 0.00037 42.8 9.6 33 218-250 99-132 (433)
191 1cr0_A DNA primase/helicase; R 72.0 21 0.00071 37.9 11.5 47 206-252 25-73 (296)
192 2r8r_A Sensor protein; KDPD, P 71.5 14 0.00049 37.8 9.3 130 218-369 8-140 (228)
193 1vq8_U 50S ribosomal protein L 69.7 1.8 6.2E-05 35.1 1.7 43 905-947 5-50 (66)
194 2r6a_A DNAB helicase, replicat 69.4 15 0.00051 41.9 10.1 48 213-260 200-249 (454)
195 4dzz_A Plasmid partitioning pr 68.9 41 0.0014 33.0 12.2 110 223-371 9-121 (206)
196 1lv7_A FTSH; alpha/beta domain 68.2 5 0.00017 41.8 5.3 32 216-249 45-76 (257)
197 3j21_V 50S ribosomal protein L 68.2 1.6 5.6E-05 35.4 1.1 44 904-947 5-51 (66)
198 2px0_A Flagellar biosynthesis 68.1 10 0.00035 40.7 7.8 36 216-251 105-142 (296)
199 1r6b_X CLPA protein; AAA+, N-t 67.4 6.2 0.00021 48.4 6.7 27 216-242 207-233 (758)
200 2zts_A Putative uncharacterize 66.9 21 0.00073 36.3 9.9 49 216-264 30-80 (251)
201 2yqp_A Probable ATP-dependent 65.9 3.7 0.00013 31.8 2.6 42 893-938 9-50 (60)
202 3cf2_A TER ATPase, transitiona 65.4 8.9 0.00031 47.0 7.4 74 216-326 238-311 (806)
203 1g5t_A COB(I)alamin adenosyltr 64.7 7.6 0.00026 38.9 5.5 36 215-250 27-63 (196)
204 1xp8_A RECA protein, recombina 64.1 28 0.00095 38.5 10.6 91 215-325 73-165 (366)
205 2zpa_A Uncharacterized protein 63.9 14 0.00046 44.3 8.3 112 200-356 175-288 (671)
206 1r6b_X CLPA protein; AAA+, N-t 63.5 42 0.0014 40.9 13.1 23 218-240 490-512 (758)
207 1u94_A RECA protein, recombina 63.4 45 0.0015 36.6 12.1 90 215-325 62-154 (356)
208 2l82_A Designed protein OR32; 62.6 26 0.00089 30.8 7.7 48 532-579 4-51 (162)
209 2zr9_A Protein RECA, recombina 61.7 14 0.00049 40.5 7.6 44 215-258 60-104 (349)
210 1gm5_A RECG; helicase, replica 61.1 16 0.00054 44.9 8.5 81 529-610 416-500 (780)
211 3bgw_A DNAB-like replicative h 60.6 18 0.00061 41.2 8.4 47 213-259 194-241 (444)
212 3izc_Z 60S ribosomal protein R 60.0 3.6 0.00012 39.1 2.0 44 904-947 4-50 (155)
213 1zu4_A FTSY; GTPase, signal re 59.6 39 0.0013 36.5 10.6 33 219-251 108-141 (320)
214 2fna_A Conserved hypothetical 59.3 1.1E+02 0.0039 32.4 14.6 37 202-240 18-54 (357)
215 1vma_A Cell division protein F 59.1 12 0.00042 40.3 6.4 33 219-251 107-140 (306)
216 4a17_T RPL24, 60S ribosomal pr 58.8 3.2 0.00011 39.6 1.4 44 904-947 6-52 (158)
217 1qvr_A CLPB protein; coiled co 57.7 11 0.00037 46.9 6.4 33 217-249 589-622 (854)
218 3iz5_Z 60S ribosomal protein L 56.7 3.7 0.00013 39.3 1.4 44 904-947 6-52 (162)
219 3io5_A Recombination and repai 56.7 29 0.001 37.5 8.6 84 218-325 30-124 (333)
220 2zkr_u 60S ribosomal protein L 55.1 3.9 0.00013 39.0 1.3 44 904-947 4-50 (157)
221 4a1f_A DNAB helicase, replicat 54.6 7.3 0.00025 42.7 3.6 47 213-259 43-90 (338)
222 2qgz_A Helicase loader, putati 54.1 18 0.00061 38.9 6.6 35 216-250 152-188 (308)
223 2j48_A Two-component sensor ki 54.0 21 0.00072 30.8 6.1 29 531-559 2-30 (119)
224 1n0w_A DNA repair protein RAD5 53.8 64 0.0022 32.4 10.7 38 215-252 23-67 (243)
225 3cg4_A Response regulator rece 53.7 95 0.0032 27.8 11.0 63 529-598 6-69 (142)
226 1sxj_E Activator 1 40 kDa subu 53.6 63 0.0022 34.8 11.2 24 218-241 38-61 (354)
227 3jyw_S 60S ribosomal protein L 53.3 2.9 9.8E-05 31.2 0.1 25 922-946 18-42 (45)
228 2das_A Zinc finger MYM-type pr 53.2 5.3 0.00018 31.3 1.5 40 904-943 21-61 (62)
229 3fkq_A NTRC-like two-domain pr 52.9 50 0.0017 36.3 10.3 31 220-250 148-179 (373)
230 1q57_A DNA primase/helicase; d 52.8 1.1E+02 0.0038 35.0 13.7 49 213-261 239-289 (503)
231 2vhj_A Ntpase P4, P4; non- hyd 52.7 34 0.0012 37.1 8.4 32 216-249 123-154 (331)
232 3i42_A Response regulator rece 51.9 20 0.00069 31.9 5.7 28 531-558 4-31 (127)
233 3cmu_A Protein RECA, recombina 51.9 54 0.0019 44.2 11.7 88 215-325 731-823 (2050)
234 2c9o_A RUVB-like 1; hexameric 51.7 6.7 0.00023 44.9 2.9 39 216-254 63-101 (456)
235 3oiy_A Reverse gyrase helicase 49.9 26 0.0009 38.9 7.5 63 528-591 62-127 (414)
236 3cmu_A Protein RECA, recombina 49.4 88 0.003 42.3 13.1 91 214-324 1425-1517(2050)
237 3crv_A XPD/RAD3 related DNA he 49.0 46 0.0016 38.9 9.6 75 530-613 393-475 (551)
238 1ixz_A ATP-dependent metallopr 47.4 19 0.00065 37.1 5.4 24 217-240 50-73 (254)
239 3h5i_A Response regulator/sens 47.0 82 0.0028 28.4 9.3 107 530-652 5-119 (140)
240 3hr8_A Protein RECA; alpha and 46.9 40 0.0014 37.1 8.0 39 218-256 63-102 (356)
241 3a10_A Response regulator; pho 46.6 69 0.0024 27.5 8.4 27 532-558 3-29 (116)
242 3ge3_A Toluene-4-monooxygenase 45.8 8.5 0.00029 44.2 2.4 59 901-960 391-461 (500)
243 2r44_A Uncharacterized protein 45.6 17 0.00058 39.2 4.8 36 205-240 35-70 (331)
244 1ypw_A Transitional endoplasmi 45.6 31 0.0011 42.5 7.6 25 215-239 237-261 (806)
245 2z43_A DNA repair and recombin 44.9 19 0.00063 39.1 4.9 39 215-253 106-151 (324)
246 2dhr_A FTSH; AAA+ protein, hex 43.7 44 0.0015 38.6 8.1 24 217-240 65-88 (499)
247 3lte_A Response regulator; str 42.6 45 0.0015 29.6 6.6 63 529-598 5-68 (132)
248 3u52_A Phenol hydroxylase comp 42.6 9.1 0.00031 44.2 2.0 38 901-938 393-441 (511)
249 1iy2_A ATP-dependent metallopr 42.4 27 0.00093 36.6 5.7 23 218-240 75-97 (278)
250 2inc_A Toluene, O-xylene monoo 42.0 12 0.0004 43.1 2.8 37 901-938 390-437 (491)
251 2ehv_A Hypothetical protein PH 42.0 1.1E+02 0.0038 30.7 10.3 45 214-258 28-74 (251)
252 3nbx_X ATPase RAVA; AAA+ ATPas 41.2 17 0.00057 42.2 4.0 41 205-245 30-70 (500)
253 1ls1_A Signal recognition part 40.9 49 0.0017 35.2 7.4 33 219-251 101-134 (295)
254 2ffh_A Protein (FFH); SRP54, s 40.5 51 0.0018 37.1 7.8 33 219-251 101-134 (425)
255 2xxa_A Signal recognition part 40.3 39 0.0013 38.2 6.8 35 218-252 102-138 (433)
256 3u4q_A ATP-dependent helicase/ 39.8 35 0.0012 44.2 7.2 64 199-265 9-80 (1232)
257 2oap_1 GSPE-2, type II secreti 39.2 25 0.00087 40.7 5.2 40 201-240 245-284 (511)
258 3grc_A Sensor protein, kinase; 38.1 67 0.0023 28.8 7.1 62 530-598 6-68 (140)
259 1u6t_A SH3 domain-binding glut 37.9 45 0.0015 30.5 5.5 45 533-577 2-53 (121)
260 1byi_A Dethiobiotin synthase; 37.8 30 0.001 34.7 4.9 32 220-251 6-38 (224)
261 4ehx_A Tetraacyldisaccharide 4 37.8 71 0.0024 34.4 8.1 20 225-244 47-66 (315)
262 2eyq_A TRCF, transcription-rep 37.6 65 0.0022 41.3 9.0 79 529-608 651-733 (1151)
263 3u4q_B ATP-dependent helicase/ 37.3 26 0.0009 45.1 5.4 82 219-322 5-91 (1166)
264 3of5_A Dethiobiotin synthetase 36.2 23 0.0008 36.2 3.8 26 219-244 8-33 (228)
265 3vaa_A Shikimate kinase, SK; s 35.6 23 0.0008 35.0 3.6 34 207-240 16-49 (199)
266 1lv3_A Hypothetical protein YA 35.2 13 0.00045 30.2 1.3 30 904-937 10-39 (68)
267 3hws_A ATP-dependent CLP prote 34.3 54 0.0018 35.8 6.7 35 216-252 51-85 (363)
268 3qxc_A Dethiobiotin synthetase 34.1 27 0.00091 36.2 3.8 31 219-249 25-56 (242)
269 2y39_A Nickel and cobalt resis 34.0 33 0.0011 31.1 3.8 26 1-26 19-44 (118)
270 3eqz_A Response regulator; str 33.6 1.4E+02 0.0048 26.2 8.5 25 531-555 4-28 (135)
271 3f6p_A Transcriptional regulat 33.3 1E+02 0.0036 26.7 7.4 61 531-598 3-64 (120)
272 2oze_A ORF delta'; para, walke 33.0 40 0.0014 35.5 5.2 26 224-249 45-71 (298)
273 1t6n_A Probable ATP-dependent 32.9 1.4E+02 0.0048 29.4 9.1 74 530-607 82-165 (220)
274 3nhm_A Response regulator; pro 32.7 1.1E+02 0.0037 27.0 7.5 26 531-557 5-30 (133)
275 3cwq_A Para family chromosome 32.6 40 0.0014 33.7 4.8 42 220-261 5-48 (209)
276 3cmw_A Protein RECA, recombina 32.0 61 0.0021 43.1 7.4 88 215-325 731-823 (1706)
277 1ypw_A Transitional endoplasmi 31.5 14 0.00047 45.6 1.3 27 214-240 509-535 (806)
278 3fgn_A Dethiobiotin synthetase 31.5 31 0.0011 35.9 3.8 26 219-244 30-55 (251)
279 1cp2_A CP2, nitrogenase iron p 30.4 31 0.0011 35.8 3.6 27 223-249 8-35 (269)
280 1g3q_A MIND ATPase, cell divis 30.4 39 0.0013 34.1 4.4 32 220-251 7-39 (237)
281 3hdv_A Response regulator; PSI 30.3 94 0.0032 27.6 6.7 83 529-617 6-97 (136)
282 3kjh_A CO dehydrogenase/acetyl 30.2 28 0.00097 35.3 3.3 29 222-250 6-35 (254)
283 1oyw_A RECQ helicase, ATP-depe 29.9 77 0.0026 36.7 7.3 62 530-592 65-126 (523)
284 2gkg_A Response regulator homo 29.9 83 0.0028 27.3 6.1 61 531-598 6-68 (127)
285 2qxy_A Response regulator; reg 29.8 1E+02 0.0035 27.6 6.9 53 530-589 4-56 (142)
286 4ddu_A Reverse gyrase; topoiso 29.7 65 0.0022 41.1 7.0 80 528-608 119-204 (1104)
287 2j37_W Signal recognition part 29.1 1.6E+02 0.0054 33.9 9.6 34 218-251 103-137 (504)
288 1hyq_A MIND, cell division inh 28.9 47 0.0016 34.2 4.8 31 220-250 7-38 (263)
289 1um8_A ATP-dependent CLP prote 28.7 45 0.0016 36.6 4.8 32 216-249 72-103 (376)
290 3cnb_A DNA-binding response re 28.6 1.2E+02 0.0042 26.9 7.2 62 529-597 7-71 (143)
291 2afh_E Nitrogenase iron protei 27.7 36 0.0012 35.8 3.6 28 222-249 8-36 (289)
292 1sxj_C Activator 1 40 kDa subu 27.1 77 0.0026 34.1 6.3 39 203-241 31-71 (340)
293 2oxc_A Probable ATP-dependent 26.9 1.7E+02 0.0059 29.1 8.6 72 529-606 91-172 (230)
294 1skn_P DNA-binding domain of S 26.8 72 0.0025 27.2 4.4 28 2-29 52-85 (92)
295 2ph1_A Nucleotide-binding prot 26.8 49 0.0017 34.2 4.4 31 220-250 23-54 (262)
296 3k9g_A PF-32 protein; ssgcid, 26.7 37 0.0013 35.1 3.5 30 221-250 33-62 (267)
297 3lua_A Response regulator rece 26.7 1.9E+02 0.0066 25.6 8.2 63 530-598 4-69 (140)
298 3ipz_A Monothiol glutaredoxin- 26.6 1E+02 0.0036 27.0 6.0 58 530-588 17-80 (109)
299 2rdm_A Response regulator rece 26.6 2.5E+02 0.0085 24.3 8.9 63 530-598 5-69 (132)
300 1tue_A Replication protein E1; 26.5 55 0.0019 33.0 4.4 23 218-240 60-82 (212)
301 3lay_A Zinc resistance-associa 26.5 44 0.0015 32.7 3.6 25 1-25 66-90 (175)
302 3q9s_A DNA-binding response re 26.4 2.1E+02 0.0073 28.9 9.3 28 530-557 37-64 (249)
303 4dpp_A DHDPS 2, dihydrodipicol 26.2 2.1E+02 0.0071 31.3 9.4 110 541-651 80-207 (360)
304 3kht_A Response regulator; PSI 25.9 1.1E+02 0.0037 27.5 6.3 64 530-598 5-69 (144)
305 2lqo_A Putative glutaredoxin R 25.8 1.5E+02 0.0052 25.3 6.7 57 531-587 4-61 (92)
306 3ber_A Probable ATP-dependent 25.5 2.2E+02 0.0074 28.9 9.2 74 529-607 110-193 (249)
307 3kto_A Response regulator rece 25.5 82 0.0028 28.2 5.3 62 530-598 6-70 (136)
308 4dad_A Putative pilus assembly 25.3 2.7E+02 0.0092 24.8 9.0 85 528-618 18-112 (146)
309 3q9l_A Septum site-determining 24.8 56 0.0019 33.4 4.4 31 220-250 7-38 (260)
310 1dbw_A Transcriptional regulat 24.8 2E+02 0.007 24.8 7.8 87 530-627 3-97 (126)
311 3foj_A Uncharacterized protein 24.7 47 0.0016 28.7 3.2 37 528-564 54-90 (100)
312 3gt7_A Sensor protein; structu 24.7 1.1E+02 0.0037 28.2 6.1 63 529-598 6-69 (154)
313 3end_A Light-independent proto 24.4 45 0.0015 35.4 3.6 30 221-250 46-76 (307)
314 1zgz_A Torcad operon transcrip 24.4 1.4E+02 0.0049 25.6 6.6 77 531-614 3-86 (122)
315 1xti_A Probable ATP-dependent 24.2 2.1E+02 0.0072 30.8 9.3 74 529-606 75-158 (391)
316 3zyw_A Glutaredoxin-3; metal b 24.2 1.2E+02 0.0042 26.8 6.0 58 530-588 15-78 (111)
317 1nks_A Adenylate kinase; therm 24.2 61 0.0021 31.2 4.3 33 219-251 4-36 (194)
318 3lda_A DNA repair protein RAD5 23.9 3.1E+02 0.01 30.4 10.5 39 215-253 177-222 (400)
319 3gl9_A Response regulator; bet 23.7 1.4E+02 0.0048 26.0 6.4 87 531-628 3-99 (122)
320 3gx8_A Monothiol glutaredoxin- 23.7 1.7E+02 0.0058 26.3 6.9 58 530-588 15-81 (121)
321 3iwh_A Rhodanese-like domain p 23.5 44 0.0015 29.4 2.8 37 528-564 54-90 (103)
322 2a9o_A Response regulator; ess 23.5 92 0.0032 26.7 5.1 60 532-598 3-63 (120)
323 1mvo_A PHOP response regulator 23.0 1.8E+02 0.0063 25.5 7.2 61 531-598 4-65 (136)
324 3trf_A Shikimate kinase, SK; a 23.0 52 0.0018 31.7 3.5 25 216-240 5-29 (185)
325 3fe2_A Probable ATP-dependent 22.9 2.6E+02 0.0087 28.0 9.1 74 528-606 100-182 (242)
326 1mty_D Methane monooxygenase h 22.9 34 0.0011 39.4 2.3 35 905-939 403-445 (512)
327 3gk5_A Uncharacterized rhodane 22.7 47 0.0016 29.2 2.9 37 528-564 53-89 (108)
328 1k66_A Phytochrome response re 22.7 1.3E+02 0.0044 26.9 6.2 65 528-598 4-80 (149)
329 2amj_A Modulator of drug activ 22.5 1.4E+02 0.0048 29.5 6.7 30 598-627 68-100 (204)
330 1k68_A Phytochrome response re 22.4 1.1E+02 0.0038 27.0 5.5 63 530-598 2-73 (140)
331 2rjn_A Response regulator rece 22.4 1.5E+02 0.005 27.1 6.5 63 529-598 6-69 (154)
332 3eme_A Rhodanese-like domain p 22.3 47 0.0016 28.8 2.8 37 528-564 54-90 (103)
333 3zq6_A Putative arsenical pump 22.2 71 0.0024 34.3 4.7 34 219-252 17-51 (324)
334 1tmy_A CHEY protein, TMY; chem 21.8 1.7E+02 0.0059 25.0 6.6 28 531-558 3-30 (120)
335 3fwy_A Light-independent proto 21.6 56 0.0019 35.2 3.6 27 224-250 56-83 (314)
336 3cio_A ETK, tyrosine-protein k 21.5 77 0.0026 33.6 4.8 29 222-250 111-140 (299)
337 2v1x_A ATP-dependent DNA helic 21.2 1.5E+02 0.0051 34.8 7.6 63 530-592 84-147 (591)
338 3l21_A DHDPS, dihydrodipicolin 21.2 2.7E+02 0.0093 29.5 9.0 112 540-652 35-166 (304)
339 3n53_A Response regulator rece 21.0 2.9E+02 0.0098 24.3 8.2 23 531-553 4-26 (140)
340 1srr_A SPO0F, sporulation resp 20.9 1.3E+02 0.0043 26.1 5.5 28 531-558 4-31 (124)
341 1wik_A Thioredoxin-like protei 20.9 1.8E+02 0.0063 25.2 6.5 57 530-587 14-76 (109)
342 3ug7_A Arsenical pump-driving 20.8 82 0.0028 34.3 4.9 32 219-250 29-61 (349)
343 3pxg_A Negative regulator of g 20.7 77 0.0026 36.1 4.8 39 204-242 187-227 (468)
344 3ea0_A ATPase, para family; al 20.7 84 0.0029 31.6 4.7 31 220-250 9-41 (245)
345 3eod_A Protein HNR; response r 20.7 2.8E+02 0.0097 23.9 8.0 63 529-598 6-69 (130)
346 2gza_A Type IV secretion syste 20.5 80 0.0027 34.6 4.8 36 207-242 166-201 (361)
347 1wp9_A ATP-dependent RNA helic 20.4 2E+02 0.0068 31.7 8.3 91 529-625 51-152 (494)
348 1in4_A RUVB, holliday junction 20.4 80 0.0027 34.0 4.7 37 204-240 32-75 (334)
349 1wcv_1 SOJ, segregation protei 20.1 62 0.0021 33.3 3.5 28 223-250 14-42 (257)
350 2xj4_A MIPZ; replication, cell 20.0 67 0.0023 33.7 3.9 39 222-260 11-53 (286)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-68 Score=651.78 Aligned_cols=468 Identities=23% Similarity=0.310 Sum_probs=355.3
Q ss_pred CChhhhccChhhHHHHHHHHHh--------cCCCeEEEcCCCchHHHHHHHHHHHHhhCC--------cEEEEeCcchHH
Q 001912 193 LPKSLLDVILPFQLEGVRFGLR--------RGGRCLIADEMGLGKTLQAIAIAACFISAG--------SILVVCPAILRL 256 (997)
Q Consensus 193 lp~~l~~~L~pyQ~~gV~~~l~--------~~g~~ILaDemGLGKTlqaial~~~~~~~g--------p~LIV~P~sL~~ 256 (997)
+|+.+...|||||++||.|++. .++|||||||||+|||+|+|+++..+...+ ++|||||++++.
T Consensus 48 ~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~ 127 (644)
T 1z3i_X 48 VDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR 127 (644)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHH
T ss_pred eChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHH
Confidence 5678889999999999999863 456899999999999999999998876543 489999999999
Q ss_pred HHHHHHHHHCCCCCCceEEEEccCCCCcc----c------ccCCCeEEEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 257 SWAEELERWLPFCLPADIHLVFGHRNNPV----H------LTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 257 qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~----~------~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
||.+|+.+|++.. ...+.+..+.+.... . .....+|+|+||+++......+....|++||+||||++||
T Consensus 128 qW~~E~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 128 NWYNEVGKWLGGR-VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHHHHGGG-CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHHHcCCC-eeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCC
Confidence 9999999998751 122333333221110 0 0124689999999999988888888999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhcccccccccc-chhhhhh
Q 001912 327 SKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQG-QLFQDFS 405 (997)
Q Consensus 327 ~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~-~~~~~~~ 405 (997)
. .++.++++..+ +++++|+|||||++|++.|+|++++|++|+.|++.. +|.+.|..+........ .......
T Consensus 207 ~----~~~~~~al~~l--~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~-~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 207 S----DNQTYLALNSM--NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ-EFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp T----CHHHHHHHHHH--CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH-HHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred h----hhHHHHHHHhc--ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHH-HHHHhhcchhhhcCCcCCCHHHHHH
Confidence 3 46778888877 588999999999999999999999999999999864 89999987653211111 1112223
Q ss_pred hhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchh
Q 001912 406 KGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA 485 (997)
Q Consensus 406 ~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (997)
+..++.+|+.++. ++|+||+++++..+||++.+.++.+.|++.|...|..+.........................+..
T Consensus 280 ~~~~~~~L~~~l~-~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 280 GEQKLQELISIVN-RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHH-HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 3456778888886 799999999999999999999999999999999999887665432111000000000000000111
Q ss_pred hhcccccchhhh--------------------------hhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCC
Q 001912 486 CCRLGKISYQEL--------------------------GIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHH 539 (997)
Q Consensus 486 ~~~l~~l~~~~~--------------------------~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~ 539 (997)
.+....+..... ...|+..+...+.. .....++|+||||++
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~-------------~~~~~~~k~lIFs~~ 425 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAM-------------TRTTTSDKVVLVSNY 425 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHH-------------HHHHCCCEEEEEESC
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHH-------------HhhcCCCEEEEEEcc
Confidence 111111111000 00111111110000 001358899999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCC-ceEEEEeccccccccCcccccEEEEecCCCCccHHhh
Q 001912 540 LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE-VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQ 618 (997)
Q Consensus 540 ~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~-~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Q 618 (997)
+.+++.|+++|...|+.+.++||+++.++|++++++|++++. ..|+|+|+++||+||||++|++||+||+||||+.+.|
T Consensus 426 ~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Q 505 (644)
T 1z3i_X 426 TQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQ 505 (644)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHH
Confidence 999999999999999999999999999999999999996543 3588999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhcccc
Q 001912 619 AEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 619 a~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~l~~ 682 (997)
|+||+||+||+++|+||+|+++||+||+|++++..|..+...++++..+....++.+++..++.
T Consensus 506 a~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~ 569 (644)
T 1z3i_X 506 AMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFS 569 (644)
T ss_dssp HHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTC
T ss_pred HHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999988766555565555555543
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-66 Score=645.76 Aligned_cols=429 Identities=23% Similarity=0.370 Sum_probs=326.2
Q ss_pred hccChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCcchHHHHHHHHHHHCCCCC
Q 001912 198 LDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPAILRLSWAEELERWLPFCL 270 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~ 270 (997)
..+|||||++||.||+ .+++++||||+||+|||+|+|+++..++ ..+|+|||||.+++.||.+||.+|+|.+.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCce
Confidence 4699999999999986 3577899999999999999999987664 36799999999999999999999998653
Q ss_pred CceEEEEccCCCCcc---------------cccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHH
Q 001912 271 PADIHLVFGHRNNPV---------------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEE 335 (997)
Q Consensus 271 ~~~i~~~~g~~~~~~---------------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~ 335 (997)
+.++.|...... .....++|+||||+++.+....+...+|++|||||||++||. .+..
T Consensus 314 ---v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~----~s~~ 386 (800)
T 3mwy_W 314 ---CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA----ESSL 386 (800)
T ss_dssp ---EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS----SSHH
T ss_pred ---EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc----hhHH
Confidence 455555433211 122357899999999999988888899999999999999984 4566
Q ss_pred HHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHH
Q 001912 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415 (997)
Q Consensus 336 ~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~ 415 (997)
++++..+ +++++|+|||||++|++.|||++++||+|+.|+... .|.... ........+.+|+.
T Consensus 387 ~~~l~~l--~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~-~~~~~~--------------~~~~~~~~~~~L~~ 449 (800)
T 3mwy_W 387 YESLNSF--KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ-EIDFEN--------------QDEEQEEYIHDLHR 449 (800)
T ss_dssp HHHHTTS--EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC----------C--------------CTTHHHHHHHHHHH
T ss_pred HHHHHHh--hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchh-hhcccc--------------cchhHHHHHHHHHH
Confidence 7777665 688999999999999999999999999999987533 222110 01112234667888
Q ss_pred HHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccch-
Q 001912 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISY- 494 (997)
Q Consensus 416 ~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~- 494 (997)
++. ++|+||++.++...||++.+.++.+.|++.|...|..++...........................++....+..
T Consensus 450 ~l~-p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 450 RIQ-PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDN 528 (800)
T ss_dssp TTG-GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSS
T ss_pred HHh-HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcc
Confidence 885 799999999999999999999999999999999998876543321111000000000000000111111111100
Q ss_pred ----------------------hhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHH
Q 001912 495 ----------------------QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE 552 (997)
Q Consensus 495 ----------------------~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~ 552 (997)
......|+..+.+++.. ....++|+||||+++.++++|.++|..
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~--------------~~~~g~kvLIFsq~~~~ld~L~~~L~~ 594 (800)
T 3mwy_W 529 AEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTR--------------LKKDGHRVLIFSQMVRMLDILGDYLSI 594 (800)
T ss_dssp HHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHH--------------HTTTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHH--------------HhhCCCeEEEEechHHHHHHHHHHHHh
Confidence 00123344444443332 235689999999999999999999999
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 553 KGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 553 ~gi~~~~idG~~s~~eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
.|+++.+|||+++..+|++++++|++++ ...|||+|+++||+||||+.|++||+||++|||+.+.||+||+||+||+++
T Consensus 595 ~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 674 (800)
T 3mwy_W 595 KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNH 674 (800)
T ss_dssp HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999643 345889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCC
Q 001912 632 VNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGK 665 (997)
Q Consensus 632 V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~ 665 (997)
|+||+|+++||+||+|++++.+|+.+...+++++
T Consensus 675 V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~ 708 (800)
T 3mwy_W 675 VMVYRLVSKDTVEEEVLERARKKMILEYAIISLG 708 (800)
T ss_dssp EEEEEEEETTSHHHHHHHHHHHHTTSCC------
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999998887777654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.1e-62 Score=580.35 Aligned_cols=444 Identities=23% Similarity=0.341 Sum_probs=347.4
Q ss_pred ChhhhccChhhHHHHHHHHH---hcCCCeEEEcCCCchHHHHHHHHHHHHhhC---CcEEEEeCcchHHHHHHHHHHHCC
Q 001912 194 PKSLLDVILPFQLEGVRFGL---RRGGRCLIADEMGLGKTLQAIAIAACFISA---GSILVVCPAILRLSWAEELERWLP 267 (997)
Q Consensus 194 p~~l~~~L~pyQ~~gV~~~l---~~~g~~ILaDemGLGKTlqaial~~~~~~~---gp~LIV~P~sL~~qW~~Ei~k~~p 267 (997)
|..+...|+|||++||.|++ ..++++||||+||+|||+++++++..+... +++|||||++|+.||.+|+.+|+|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 67788899999999999975 457789999999999999999998887653 589999999999999999999998
Q ss_pred CCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 268 FCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
.. .+.++.+.... .....++|+|+||+.+.+... +....|++||+||||+++|.. +..++++..+ .++
T Consensus 111 ~~---~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~----~~~~~~l~~l--~~~ 178 (500)
T 1z63_A 111 HL---RFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQ----TKIFKAVKEL--KSK 178 (500)
T ss_dssp TS---CEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTT----SHHHHHHHTS--CEE
T ss_pred Cc---eEEEEecCchh--ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHh----HHHHHHHHhh--ccC
Confidence 64 35555554422 122357899999999987654 666899999999999999743 4567777665 478
Q ss_pred cEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHh
Q 001912 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427 (997)
Q Consensus 348 ~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k 427 (997)
++|+|||||++|++.|+|++++|++|+.+++.. .|...|+.+... .......+|..++. ++++||++
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~-~f~~~~~~~~~~-----------~~~~~~~~l~~~l~-~~~lrr~k 245 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYS-EFKSKFATPIKK-----------GDNMAKEELKAIIS-PFILRRTK 245 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHH-HHHTTTHHHHHT-----------TCHHHHHHHHHHHT-TTEECCCT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHH-HHHHHhcccccc-----------ccHHHHHHHHHHHh-hHeeeecc
Confidence 899999999999999999999999999999854 888888765421 11234567777775 79999998
Q ss_pred hh--hhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCc-cccchhhhcccccch----------
Q 001912 428 QH--LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE-HDDSGACCRLGKISY---------- 494 (997)
Q Consensus 428 ~~--v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~---------- 494 (997)
.+ +..+||++.+..+.+.+++.+...|..+............ .... .........++.+..
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~ 319 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT------GIKRKGMILSTLLKLKQIVDHPALLKGGEQ 319 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC------THHHHHHHHHHHHHHHHHTTCTHHHHCSCC
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh------cccchHHHHHHHHHHHHHhCCHHHhcCccc
Confidence 76 6779999999999999999999999887765543211000 0000 000000000000000
Q ss_pred hhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHH
Q 001912 495 QELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-GIGFVRIDGNTLPRDRQSAV 573 (997)
Q Consensus 495 ~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~-gi~~~~idG~~s~~eR~~~i 573 (997)
......|+..+.+++.. ....++|+|||++++.+++.|.+.|... |+.+.+++|+++..+|++++
T Consensus 320 ~~~~s~K~~~l~~~l~~--------------~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 320 SVRRSGKMIRTMEIIEE--------------ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp CSTTCHHHHHHHHHHHH--------------HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHH--------------HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 00112343333333332 1246889999999999999999999986 99999999999999999999
Q ss_pred HHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHH
Q 001912 574 HSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653 (997)
Q Consensus 574 ~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~ 653 (997)
++|+++++++|+|+|++++|+||||+.|++||++|++|||..+.||+||+||+||+++|+||+|++++|+||.|++++.+
T Consensus 386 ~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 386 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp HHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred HHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 99997767888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhCCChhhhhhhchhhhhcccc
Q 001912 654 SLRCVSSATNGKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 654 K~~~i~~~l~g~~~~~~~~~~~~~~~l~~ 682 (997)
|..++..++++.......++.+++..++.
T Consensus 466 K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (500)
T 1z63_A 466 KRSLFKDIISSGDSWITELSTEELRKVIE 494 (500)
T ss_dssp CSSSSSSGGGSTTGGGGSSCHHHHHHHHS
T ss_pred HHHHHHHHhhcCcchhccCCHHHHHHHhc
Confidence 99999999998877777777777666654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.2e-48 Score=492.56 Aligned_cols=445 Identities=22% Similarity=0.304 Sum_probs=319.3
Q ss_pred hccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHhhCC---cEEEEeCcchHHHHHHHHHHHCCCCCCce
Q 001912 198 LDVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFISAG---SILVVCPAILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~~~g---p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
...|+|||++++.|++.+ ++++||||+||+|||++|++++..+...+ ++|||||++|+.||..|+.+|++. .
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l----~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNL----R 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHSCC----C
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHhCC----C
Confidence 458999999999998875 45899999999999999999998876544 799999999999999999999842 2
Q ss_pred EEEEccCCC-----CcccccCCCeEEEEehhHHHHHH---HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 274 IHLVFGHRN-----NPVHLTRFPRVVVISYTMLHRLR---KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 274 i~~~~g~~~-----~~~~~~~~~~VvItTy~~l~~~~---~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
+.++.+... .........+|+|+||+.+.+.. ..+...+|++|||||||+++|..+.. +..++.+..+..+
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~-s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP-SREYQAIEQLAEH 305 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBC-CHHHHHHHHHHTT
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcc-hHHHHHHHHHhhc
Confidence 333333221 11112235789999999997642 34556799999999999999876543 4557788888767
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccc------------------ccc--------c
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQG------------------YQG--------Q 399 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~------------------~~~--------~ 399 (997)
++++|+|||||++|++.|+|+++.+++|+.|++.. .|...+........ ... .
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~-~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFA-QFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTH-HHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHH-HHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 88999999999999999999999999999998754 66655433221000 000 0
Q ss_pred hhhhhh------hhccHHHHHHHHH----hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccC
Q 001912 400 LFQDFS------KGVRLEELNVLLK----QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDAT 469 (997)
Q Consensus 400 ~~~~~~------~~~~~~eL~~~l~----~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~ 469 (997)
...... .......+..++. ..+++|+++..+ ..+|.+....+.+.+++.....|...... .. ..
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~-~~-~~--- 458 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIM-GA-RK--- 458 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHT-TC-CS---
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhh-hh-hh---
Confidence 000000 0011111222221 123334444444 47888888999999998877666542111 00 00
Q ss_pred CCCCCCCCCccccchhhhcccc--------cchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHH
Q 001912 470 NDKTPKDSDEHDDSGACCRLGK--------ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLK 541 (997)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~--------l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~ 541 (997)
... ........... .........|...+.+++.. ..+.|+||||+++.
T Consensus 459 -------~~~-~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~----------------~~~~k~iVF~~~~~ 514 (968)
T 3dmq_A 459 -------SAE-DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS----------------HRSQKVLVICAKAA 514 (968)
T ss_dssp -------SGG-GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH----------------TSSSCCCEECSSTH
T ss_pred -------hhH-HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh----------------CCCCCEEEEeCcHH
Confidence 000 00000000000 00011123344444444432 35789999999999
Q ss_pred HHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhH
Q 001912 542 VLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQA 619 (997)
Q Consensus 542 ~ld~L~~~L~~-~gi~~~~idG~~s~~eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa 619 (997)
+++.|.+.|.. .|+++..+||+|+..+|..++++|++.. .+.| |++|+++|+|||++.+++||++|+||||..+.|+
T Consensus 515 ~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~ 593 (968)
T 3dmq_A 515 TALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQR 593 (968)
T ss_dssp HHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHH
Confidence 99999999995 5999999999999999999999999443 2667 7889999999999999999999999999999999
Q ss_pred HHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhhhCCChhhhhhhchhhhhc
Q 001912 620 EDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSATNGKYDALQEIAVEGVSY 679 (997)
Q Consensus 620 ~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~l~g~~~~~~~~~~~~~~~ 679 (997)
+||++|+||++.|.||+++.++|+|+.|++.+.+|.+.+...+.+..+....+..+....
T Consensus 594 ~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~~~~~~l~~~ 653 (968)
T 3dmq_A 594 IGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINY 653 (968)
T ss_dssp HHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888887777766655443333
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-42 Score=404.97 Aligned_cols=418 Identities=20% Similarity=0.214 Sum_probs=271.2
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
.|+|||.+++.|++.. ++||+++||+|||+++++++..+. ..+++|||||+ +|+.||.+++.+|+... ...+..
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEE
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcc-hhheEE
Confidence 7999999999999985 789999999999999999887765 36789999998 89999999999998421 224555
Q ss_pred EccCCCCcc--cccCCCeEEEEehhHHHHHHH--hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEE
Q 001912 277 VFGHRNNPV--HLTRFPRVVVISYTMLHRLRK--SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352 (997)
Q Consensus 277 ~~g~~~~~~--~~~~~~~VvItTy~~l~~~~~--~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llL 352 (997)
+.|...... ......+|+|+||+.+..... .+...+|++||+||||++++.. ................++|+|
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~---~~~~~~~~~~~~~~~~~~l~l 162 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY---AYVFIAREYKRQAKNPLVIGL 162 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC---HHHHHHHHHHHHCSSCCEEEE
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC---cHHHHHHHHHhcCCCCeEEEE
Confidence 555443221 112257899999999988654 3445789999999999998532 111122222222346789999
Q ss_pred eccCCCCChhHHHHHHHhhccCCccch--hHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 353 SGTPSLSRPYDIFHQINMLWPGLLGKA--KYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 353 TGTPi~n~~~El~~ll~~l~p~~~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
||||. ++..+++.++.++.+...... ...+...|....... ...........++...+. .++.++++...
T Consensus 163 TaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 234 (494)
T 1wp9_A 163 TASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFE------WVRVDLPEIYKEVRKLLR-EMLRDALKPLA 234 (494)
T ss_dssp ESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEE------EEEECCCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred ecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCcee------EEecCCcHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999 778888888887765432110 001122222211100 001111233455666665 47778888776
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhccc---------------ccc--
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG---------------KIS-- 493 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------~l~-- 493 (997)
...+..... ..++..+.......+....... ... .............+. ...
T Consensus 235 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (494)
T 1wp9_A 235 ETGLLESSS----PDIPKKEVLRAGQIINEEMAKG---NHD----LRGLLLYHAMALKLHHAIELLETQGLSALRAYIKK 303 (494)
T ss_dssp HHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTT---CCS----TTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhccccccC----CCcchhHHHHHHHHHHHHhhcc---ccc----hhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Confidence 665554322 1233333322222222211110 000 000000000000000 000
Q ss_pred ---------------------------------hhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCH
Q 001912 494 ---------------------------------YQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL 540 (997)
Q Consensus 494 ---------------------------------~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~ 540 (997)
.......|+..+.+++..+. ....+.|+|||++++
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~------------~~~~~~k~lVF~~~~ 371 (494)
T 1wp9_A 304 LYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQL------------QRKQNSKIIVFTNYR 371 (494)
T ss_dssp HHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH------------HHCTTCCEEEECSCH
T ss_pred HHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh------------ccCCCCeEEEEEccH
Confidence 00011223333333332210 014688999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEeC--------CCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCC
Q 001912 541 KVLDGVQEFISEKGIGFVRIDG--------NTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQS 612 (997)
Q Consensus 541 ~~ld~L~~~L~~~gi~~~~idG--------~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wn 612 (997)
.+++.|.++|...|+.+..+|| +++..+|++++++|+ ++++.| |++|.++|+|||++++++||++|++||
T Consensus 372 ~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~~~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~ 449 (494)
T 1wp9_A 372 ETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFA-RGEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPS 449 (494)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHH-HTSCSE-EEECGGGGGGGGSTTCCEEEESSCCHH
T ss_pred HHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHh-cCCceE-EEECCccccCCCchhCCEEEEeCCCCC
Confidence 9999999999999999999999 999999999999999 566777 888999999999999999999999999
Q ss_pred ccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 613 PSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 613 p~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
|..+.|++||++|.|| +.+|+|++++|+||.++..+.+|.+.+.
T Consensus 450 ~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 450 AIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999998 8899999999999999999988877654
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.9e-38 Score=373.77 Aligned_cols=363 Identities=17% Similarity=0.160 Sum_probs=244.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce-EEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPAD-IHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~-i~~ 276 (997)
..|+|||.+++.+++. ++++||+++||+|||+++++++... ..++|||||+ +|+.||.+++.+| + .. +.+
T Consensus 92 ~~l~~~Q~~ai~~i~~-~~~~ll~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~-~----~~~v~~ 163 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIF-G----EEYVGE 163 (472)
T ss_dssp CCBCHHHHHHHHHHTT-TTEEEEECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGG-C----GGGEEE
T ss_pred CCcCHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhC-C----CcceEE
Confidence 4799999999998876 4569999999999999999888765 6789999999 9999999999995 2 23 555
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
+.|.... ..+|+|+||+.+......+. .+|++|||||||++.+.. ++.+.... ..+++++|||||
T Consensus 164 ~~g~~~~------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~-------~~~~~~~~-~~~~~l~lSATp 228 (472)
T 2fwr_A 164 FSGRIKE------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES-------YVQIAQMS-IAPFRLGLTATF 228 (472)
T ss_dssp BSSSCBC------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTT-------THHHHHTC-CCSEEEEEESCC
T ss_pred ECCCcCC------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChH-------HHHHHHhc-CCCeEEEEecCc
Confidence 5554432 46899999999987766543 469999999999997632 33344443 467899999999
Q ss_pred CCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh-hccCC
Q 001912 357 SLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL-LVQLP 435 (997)
Q Consensus 357 i~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v-~~~LP 435 (997)
..++..+. .+..++.|..+ ++...++ ...++
T Consensus 229 ~~~~~~~~-~l~~~~~~~~~-----------------------------------------------~~~~~~l~~~~l~ 260 (472)
T 2fwr_A 229 EREDGRHE-ILKEVVGGKVF-----------------------------------------------ELFPDSLAGKHLA 260 (472)
T ss_dssp CCTTSGGG-SHHHHTCCEEE-----------------------------------------------ECCHHHHTSCCCC
T ss_pred cCCCCHHH-HHHHHhCCeEe-----------------------------------------------ecCHHHHhcCcCC
Confidence 96542210 00111111100 0000011 12366
Q ss_pred CceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccch---hhhcc-cccc-------hhhhhhhhhhh
Q 001912 436 PKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSG---ACCRL-GKIS-------YQELGIAKLSG 504 (997)
Q Consensus 436 ~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l-~~l~-------~~~~~~~K~~~ 504 (997)
+.....+.+.+++.+...|..+...+............. ......... ..... ..+. .......|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 339 (472)
T 2fwr_A 261 KYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR-AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRK 339 (472)
T ss_dssp SEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC-CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc-hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 666777888888888777765554443321111000000 000000000 00000 0000 00112234444
Q ss_pred hhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceE
Q 001912 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584 (997)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~V 584 (997)
+.+++.. ..++|+|||+++..+++.|.+.|. +..++|+++..+|++++++|+ +++++|
T Consensus 340 l~~~l~~----------------~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~-~g~~~v 397 (472)
T 2fwr_A 340 LREILER----------------HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFR-TGRFRA 397 (472)
T ss_dssp HHHHHHH----------------TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHH-HSSCSB
T ss_pred HHHHHHh----------------CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHh-CCCCCE
Confidence 4444432 357899999999999999999884 456899999999999999999 577888
Q ss_pred EEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCC-CeEEEEEEeeCCChHHHHHHHHHHhHH
Q 001912 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAKDTTDESHWQNLNKSLR 656 (997)
Q Consensus 585 lLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~-k~V~Vy~Li~~gTiEe~i~~~l~~K~~ 656 (997)
|++|+++++|+|++.+++||++|++|||..+.|++||++|.||. +.|.||.|++++|+||.+.++.++|.+
T Consensus 398 -Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~ 469 (472)
T 2fwr_A 398 -IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAK 469 (472)
T ss_dssp -CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-------------
T ss_pred -EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999999998 789999999999999999988776654
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.5e-34 Score=348.47 Aligned_cols=422 Identities=13% Similarity=0.156 Sum_probs=201.1
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh------CCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS------AGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~------~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
+|+|||.+++.+++. +.++|++++||+|||++++..+..... .+++|||||+ +|+.||.+++.+|++.. ..
T Consensus 7 ~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 84 (556)
T 4a2p_A 7 KARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GY 84 (556)
T ss_dssp -CCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TC
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-Cc
Confidence 789999999999886 678999999999999999887766543 4579999999 89999999999998643 22
Q ss_pred eEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--h-hhccccEEEeccccccccCCCCCcHHHHHHHH-HHH--
Q 001912 273 DIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVA-- 343 (997)
Q Consensus 273 ~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~-- 343 (997)
.+..+.|...... .+....+|+|+|++.+...... + ....|++||+||||++.+.. . +..+. ...
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~----~--~~~~~~~~~~~ 158 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH----P--YNVLMTRYLEQ 158 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS----H--HHHHHHHHHHH
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc----h--HHHHHHHHHHh
Confidence 3444555432221 1223578999999999876543 2 33578999999999997532 1 22222 221
Q ss_pred -----hhcCcEEEEeccCCCCChhHHH-------HHHHhhccCCccc---hhHHHHHHhhccccccccccchhhhhhhhc
Q 001912 344 -----AKVKRIVLLSGTPSLSRPYDIF-------HQINMLWPGLLGK---AKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408 (997)
Q Consensus 344 -----~~~~~~llLTGTPi~n~~~El~-------~ll~~l~p~~~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (997)
....++++|||||..++..++. .+...+++..+.. ...++ ..|.......... ... ...
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~-~~~- 232 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL-QRFMNKPEIDVRL---VKR-RIH- 232 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH-HHHTCCCCEEEEE---CCC-CSC-
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHH-HhcCCCCceEEEE---cCC-CcC-
Confidence 1236799999999877643333 3333333222111 11122 2222111000000 000 000
Q ss_pred cHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchh---
Q 001912 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGA--- 485 (997)
Q Consensus 409 ~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 485 (997)
..+...+. .++..+.......+. ................|...+..+.......... ... ........
T Consensus 233 --~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 303 (556)
T 4a2p_A 233 --NPFAAIIS--NLMSETEALMRTIYS--VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE--DKE-EESRICRALFI 303 (556)
T ss_dssp --CHHHHHHH--HHHHHHHHHHHHHCC-----------CCCSSHHHHHHHHHHHHHHHHC-----CHH-HHHHHHHHHHH
T ss_pred --ChHHHHHH--HHHHHHHHHHHHHhh--hhhhhcccccccchhhHHHHHHHHHHHHHhhccc--ccc-hhHHHHHHHHH
Confidence 01111111 111122211111111 0000011111111111222221111100000000 000 00000000
Q ss_pred -----------------------hhcccccch-------------------------------hhhhhhhhhhhhhhhcc
Q 001912 486 -----------------------CCRLGKISY-------------------------------QELGIAKLSGFREWLSI 511 (997)
Q Consensus 486 -----------------------~~~l~~l~~-------------------------------~~~~~~K~~~~~~~l~~ 511 (997)
...+..... ......|+..+.+++..
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~ 383 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 383 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHH
Confidence 000000000 00012233333332221
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------CCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------GIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
+. ....+.|+|||++++.+++.|.++|... |..+..+||+++.++|.+++++|+++
T Consensus 384 ~~------------~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 384 AY------------RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HH------------HHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred Hh------------cCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 10 0146789999999999999999999875 55666778889999999999999965
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
++++| |++|+++|+|||++++++||+||+||||..+.|++|| |+.+++.+|.|++++++++. +.....|...+.
T Consensus 452 g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~ 525 (556)
T 4a2p_A 452 KDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMN 525 (556)
T ss_dssp --CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHH
T ss_pred CceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHH
Confidence 88888 8999999999999999999999999999999999999 44578889999999999998 445555555555
Q ss_pred hhh
Q 001912 660 SAT 662 (997)
Q Consensus 660 ~~l 662 (997)
.++
T Consensus 526 ~~i 528 (556)
T 4a2p_A 526 KAV 528 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.1e-34 Score=342.19 Aligned_cols=406 Identities=14% Similarity=0.173 Sum_probs=213.8
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh------CCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS------AGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~------~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
+|+|||.+++.+++. |.++|++++||+|||++++..+..... .+++|||||+ +|+.||.+++.+|++... .
T Consensus 4 ~~~~~Q~~~i~~~~~-~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG-Y 81 (555)
T ss_dssp CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT-C
T ss_pred CCcHHHHHHHHHHhC-CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC-c
Confidence 689999999999886 678999999999999999887766543 5579999999 999999999999986442 2
Q ss_pred eEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--h-hhccccEEEeccccccccCCCCCcHHHHHHHH-HHHh-
Q 001912 273 DIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVAA- 344 (997)
Q Consensus 273 ~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~~- 344 (997)
.+..+.|...... .+....+|+|+||+.+...... + ....|++|||||||++.+.. . +..+. ....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~----~--~~~~~~~~~~~ 155 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH----P--YNQIMFRYLDH 155 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC----H--HHHHHHHHHHH
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc----h--HHHHHHHHHHh
Confidence 3555555442221 1223478999999999876553 2 34578999999999997532 2 22222 2211
Q ss_pred -------hcCcEEEEeccCCCCChhHHHHHH-------HhhccCCccc---hhHHHHHHhhccccccccccchhhhhhhh
Q 001912 345 -------KVKRIVLLSGTPSLSRPYDIFHQI-------NMLWPGLLGK---AKYDFAKTYCDVKTVQGYQGQLFQDFSKG 407 (997)
Q Consensus 345 -------~~~~~llLTGTPi~n~~~El~~ll-------~~l~p~~~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 407 (997)
...++++|||||..++..++...+ ..++...+.. ...++. .|........ ..+. .
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~------~~~~-~ 227 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE-QVVYKPQKIS------RKVA-S 227 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH-TTCCCCCEEE------EECC-C
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH-hhcCCCceEE------EEec-C
Confidence 125799999999988754444333 3333221111 011111 1111000000 0000 0
Q ss_pred ccHHHHHHHHHhH-HHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCc-cccchh
Q 001912 408 VRLEELNVLLKQT-VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDE-HDDSGA 485 (997)
Q Consensus 408 ~~~~eL~~~l~~~-~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 485 (997)
.....+...+... --++...+.+...++...... ...+. ...|...+..+......... ..... ......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~g---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 299 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQ-NREFG---TQKYEQWIVGVHKACSVFQM----ADKEEESRVCKA 299 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCC-SCCSS---SHHHHHHHHHHHHHHHTCCC----SSHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-ccccc---chhhhHHHHHHHHHhhhhhc----cchhhHHHHHHH
Confidence 0000011111100 001122222222211110000 00000 01111111111110000000 00000 000000
Q ss_pred ---h-hccc----------------------cc-------------------------------chhhhhhhhhhhhhhh
Q 001912 486 ---C-CRLG----------------------KI-------------------------------SYQELGIAKLSGFREW 508 (997)
Q Consensus 486 ---~-~~l~----------------------~l-------------------------------~~~~~~~~K~~~~~~~ 508 (997)
+ ..+. .+ ........|...+.++
T Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 379 (555)
T 3tbk_A 300 LFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLV 379 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHH
Confidence 0 0000 00 0000011222222222
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcC------------CeEEEEeCCCCHHHHHHHHHHh
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG------------IGFVRIDGNTLPRDRQSAVHSF 576 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~g------------i~~~~idG~~s~~eR~~~i~~F 576 (997)
+... .....+.|+||||+++.+++.|.+.|...| ..+..+||+++.++|.+++++|
T Consensus 380 l~~~------------~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 380 LQEE------------YHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp HHHH------------HHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred HHHH------------hccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 2210 012357899999999999999999999863 4556667799999999999999
Q ss_pred ccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHH
Q 001912 577 QLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646 (997)
Q Consensus 577 ~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~ 646 (997)
+++++++| |++|+++|+|||++++++||+||+||||..+.||+|| |+.+.+.+|.|+++++.++.
T Consensus 448 ~~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 448 RASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ----CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH
T ss_pred hcCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH
Confidence 96588888 7899999999999999999999999999999999999 66688999999999999887
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-35 Score=322.33 Aligned_cols=247 Identities=18% Similarity=0.161 Sum_probs=164.4
Q ss_pred HHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCC-CCCCccccchhhhcccccch----hh
Q 001912 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTP-KDSDEHDDSGACCRLGKISY----QE 496 (997)
Q Consensus 422 ~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~----~~ 496 (997)
-+||+|++|..+||+|.+.+++|+|++.|...|..+................. ...........++..+.+.. ..
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~~ 92 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV 92 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCS
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCcccc
Confidence 47899999999999999999999999999999998876654322110000000 00000000011111111100 01
Q ss_pred hhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHH
Q 001912 497 LGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK-GIGFVRIDGNTLPRDRQSAVHS 575 (997)
Q Consensus 497 ~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~-gi~~~~idG~~s~~eR~~~i~~ 575 (997)
....|+..+.+++.. ....++|+||||+++.+++.|.++|... |+.+.++||+++..+|++++++
T Consensus 93 ~~s~K~~~L~~ll~~--------------~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEE--------------ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp TTCHHHHHHHHHHHH--------------HHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--------------HHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence 123344444444332 1235889999999999999999999985 9999999999999999999999
Q ss_pred hccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhH
Q 001912 576 FQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSL 655 (997)
Q Consensus 576 F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~ 655 (997)
|+++++++|+|+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||.|++++.+|.
T Consensus 159 F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~ 238 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 238 (271)
T ss_dssp HHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCH
T ss_pred hcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Confidence 99776888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCChhhhhhhchhhhhcccc
Q 001912 656 RCVSSATNGKYDALQEIAVEGVSYLEM 682 (997)
Q Consensus 656 ~~i~~~l~g~~~~~~~~~~~~~~~l~~ 682 (997)
.+++.++++.......++.+++..++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ 265 (271)
T 1z5z_A 239 SLFKDIISSGDSWITELSTEELRKVIE 265 (271)
T ss_dssp HHHTTGGGGTTHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHccCchhhhcCCHHHHHHHhc
Confidence 999999998877777777777776664
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-34 Score=362.47 Aligned_cols=428 Identities=15% Similarity=0.194 Sum_probs=211.7
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh------CCcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS------AGSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~------~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
...|+|||.+++.+++. |.++|++++||+|||++++..+..... .+++|||||+ +|+.||.+++.+|++..
T Consensus 246 ~~~~r~~Q~~ai~~il~-g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~- 323 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 323 (936)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 45899999999999986 678999999999999999887766543 5679999998 79999999999998743
Q ss_pred CceEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--h-hhccccEEEeccccccccCCCCCcHHHHHHHH-HHH
Q 001912 271 PADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVA 343 (997)
Q Consensus 271 ~~~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~ 343 (997)
...+..+.|...... .+....+|+|+||+.+...... + ....|++|||||||++.+.. . +..+. .+.
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~----~--~~~i~~~~~ 397 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH----P--YNVLMTRYL 397 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC----H--HHHHHHHHH
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc----c--HHHHHHHHH
Confidence 223555555442221 2223578999999999876543 2 23568999999999997532 2 33322 222
Q ss_pred h-------hcCcEEEEeccCCCCChhHHHHHH-------HhhccCCccc---hhHHHHHHhhccccccc--cccchhhhh
Q 001912 344 A-------KVKRIVLLSGTPSLSRPYDIFHQI-------NMLWPGLLGK---AKYDFAKTYCDVKTVQG--YQGQLFQDF 404 (997)
Q Consensus 344 ~-------~~~~~llLTGTPi~n~~~El~~ll-------~~l~p~~~~~---~~~~F~~~~~~~~~~~~--~~~~~~~~~ 404 (997)
. ...++++|||||..++..++...+ ..++...+.. ...++. .|........ ........+
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~-~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ-RFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH-HHSCCCCEEEEECCCCSCCHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH-HhccCCcceEEecccccCcHH
Confidence 1 126799999999887654444333 2333222111 111222 2322111000 000000000
Q ss_pred hh--hccHHHHHHHHHh---------------------HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHH-----
Q 001912 405 SK--GVRLEELNVLLKQ---------------------TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKA----- 456 (997)
Q Consensus 405 ~~--~~~~~eL~~~l~~---------------------~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~----- 456 (997)
.. ..-+.+++.++.. +++....+......+|.+. .....+..
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~----------~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICT 546 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHH
Confidence 00 0000111111110 0111111111111122110 00000000
Q ss_pred -HHHHHhhhccccCCC-----------------CCCCCCCccccch----hhhccccc-chhhhhhhhhhhhhhhhccCc
Q 001912 457 -AVGVINDSEKDATND-----------------KTPKDSDEHDDSG----ACCRLGKI-SYQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 457 -~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~----~~~~l~~l-~~~~~~~~K~~~~~~~l~~~~ 513 (997)
.+..+.......... ............. ....+... ........|+..+.+++....
T Consensus 547 ~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (936)
T 4a2w_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (936)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHh
Confidence 000000000000000 0000000000000 00000000 000012334444444443211
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------CCeEEEEeCCCCHHHHHHHHHHhccCCC
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------GIGFVRIDGNTLPRDRQSAVHSFQLSNE 581 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------gi~~~~idG~~s~~eR~~~i~~F~~~~~ 581 (997)
....+.|+||||+++.+++.|.++|... |..+..+||+|+..+|.+++++|+++++
T Consensus 627 ------------~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~ 694 (936)
T 4a2w_A 627 ------------RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (936)
T ss_dssp ------------TSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------C
T ss_pred ------------ccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 1245799999999999999999999986 6666777899999999999999996588
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhh
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~ 661 (997)
++| |++|+++|+|||++++++||+||+||||..+.||+|| |+.+++.+|.|++.+|+++..+ ....|...+..+
T Consensus 695 ~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~ 768 (936)
T 4a2w_A 695 NRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKA 768 (936)
T ss_dssp CSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHH
T ss_pred eeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHH
Confidence 887 8999999999999999999999999999999999999 5557788999999999999866 555555555554
Q ss_pred h
Q 001912 662 T 662 (997)
Q Consensus 662 l 662 (997)
+
T Consensus 769 i 769 (936)
T 4a2w_A 769 V 769 (936)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.1e-34 Score=358.85 Aligned_cols=428 Identities=15% Similarity=0.187 Sum_probs=208.2
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh------CCcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS------AGSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~------~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
...|+|||.+++.+++. |.++|++++||+|||++++..+..... .+++|||||+ +|+.||.+++.+|++..
T Consensus 246 ~~~l~~~Q~~~i~~~l~-~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~- 323 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 323 (797)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCHHHHHHHHHHHh-CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC-
Confidence 45899999999999876 678999999999999999887765543 5679999998 79999999999998743
Q ss_pred CceEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--h-hhccccEEEeccccccccCCCCCcHHHHHHHH-HHH
Q 001912 271 PADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVA 343 (997)
Q Consensus 271 ~~~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~ 343 (997)
...+..+.|...... .+....+|+|+||+.+...... + ...+|++|||||||++.+.. . +..+. .+.
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~----~--~~~i~~~~~ 397 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH----P--YNVLMTRYL 397 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS----H--HHHHHHHHH
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc----c--HHHHHHHHH
Confidence 223555555442221 2234679999999999876543 2 23568999999999997532 1 33332 221
Q ss_pred -------hhcCcEEEEeccCCCCChhHHHHH-------HHhhccCCccc---hhHHHHHHhhccccccc-ccc-chhhhh
Q 001912 344 -------AKVKRIVLLSGTPSLSRPYDIFHQ-------INMLWPGLLGK---AKYDFAKTYCDVKTVQG-YQG-QLFQDF 404 (997)
Q Consensus 344 -------~~~~~~llLTGTPi~n~~~El~~l-------l~~l~p~~~~~---~~~~F~~~~~~~~~~~~-~~~-~~~~~~ 404 (997)
....++++|||||..++..++... ...+++..+.. ....+ ..|........ ... .....+
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQEL-QRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHH-HHHSCCCCCEEEECCCCSCCHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHH-HHhcCCCceEEEecCCCCCcHH
Confidence 122679999999987664433332 22333222211 11122 22222111000 000 000000
Q ss_pred h--hhccHHHHHHHHHhH---------------------HHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHH----
Q 001912 405 S--KGVRLEELNVLLKQT---------------------VMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAA---- 457 (997)
Q Consensus 405 ~--~~~~~~eL~~~l~~~---------------------~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~---- 457 (997)
. ......+++.++... ++....+......++.+ ......+..+
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHH
Confidence 0 000011111111110 00000000001111110 0000000000
Q ss_pred --HHHHhhhccccCCC-----------------CCCCCCCccccch----hhhcccccc-hhhhhhhhhhhhhhhhccCc
Q 001912 458 --VGVINDSEKDATND-----------------KTPKDSDEHDDSG----ACCRLGKIS-YQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 458 --~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~----~~~~l~~l~-~~~~~~~K~~~~~~~l~~~~ 513 (997)
+..+.......... ............. ....+.... .......|+..+.+++..+.
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00000000000000 0000000000000 000000000 00001334444444433210
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------CCeEEEEeCCCCHHHHHHHHHHhccCCC
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------GIGFVRIDGNTLPRDRQSAVHSFQLSNE 581 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------gi~~~~idG~~s~~eR~~~i~~F~~~~~ 581 (997)
....+.|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+++++
T Consensus 627 ------------~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~ 694 (797)
T 4a2q_A 627 ------------RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (797)
T ss_dssp ------------HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C
T ss_pred ------------ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 1145789999999999999999999873 6667788999999999999999996588
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHHhh
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVSSA 661 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~~~ 661 (997)
++| |++|+++|+|||++++++||+||+||||..+.||+|| +| .+++.+|.|++.++++++ +.....|...+..+
T Consensus 695 ~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~ 768 (797)
T 4a2q_A 695 NRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKA 768 (797)
T ss_dssp CSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHH
T ss_pred ceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHH
Confidence 887 8999999999999999999999999999999999999 44 578889999999999998 55555555555544
Q ss_pred h
Q 001912 662 T 662 (997)
Q Consensus 662 l 662 (997)
+
T Consensus 769 i 769 (797)
T 4a2q_A 769 V 769 (797)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.8e-33 Score=331.60 Aligned_cols=343 Identities=15% Similarity=0.150 Sum_probs=240.1
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|+|||.+++.+++. +.++||+++||+|||++++.++..... .+++|||||+ +|+.||.+++.+|.... ...+.
T Consensus 112 ~~l~~~Q~~ai~~~~~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~-~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHH-HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSC-GGGEE
T ss_pred CCCCHHHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCC-ccceE
Confidence 4899999999999887 467899999999999999887766543 3489999998 89999999999984332 22455
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
.+.+............+|+|+||+.+.+... ..-.+|++|||||||++.+ ..+..+........++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~-------~~~~~il~~~~~~~~~l~lSAT 261 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATG-------KSISSIISGLNNCMFKFGLSGS 261 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCH-------HHHHHHGGGCTTCCEEEEEESC
T ss_pred EEecCCccccccccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCc-------ccHHHHHHhcccCcEEEEEEeC
Confidence 5555444333344568999999998866422 2235799999999999963 3344444444456789999999
Q ss_pred CCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCC
Q 001912 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435 (997)
Q Consensus 356 Pi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP 435 (997)
| .+...+++.+..++.|..+.... .+ .+. ...++
T Consensus 262 p-~~~~~~~~~~~~~~~~~~~~~~~---------------------~~------------~~~------------~~~l~ 295 (510)
T 2oca_A 262 L-RDGKANIMQYVGMFGEIFKPVTT---------------------SK------------LME------------DGQVT 295 (510)
T ss_dssp G-GGCSSCHHHHHHHHCSEECCCCC---------------------C---------------------------------
T ss_pred C-CCCcccHHHhHHhhCCeEEeeCH---------------------HH------------Hhh------------CCcCC
Confidence 9 45555566666555443221100 00 000 01355
Q ss_pred CceEEEEEEecChhHHHH-----HHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 436 PKRRQIIRLLLKRSEIVS-----AKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 436 ~k~~~~i~~~l~~~q~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
+.....+.+.++...... |......+. ....+...+.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~l~~~l~ 341 (510)
T 2oca_A 296 ELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT----------------------------------GLSKRNKWIAKLAI 341 (510)
T ss_dssp CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH----------------------------------TCHHHHHHHHHHHH
T ss_pred CceEEEEeecCChHHhccccccchHHHHHHHh----------------------------------ccHHHHHHHHHHHH
Confidence 666666667766554311 111000000 00011111222222
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec-
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI- 589 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt- 589 (997)
.. ....+.++|||+. +..++.|.+.|...+.++..+||+++..+|+++++.|+ +++..| |++|
T Consensus 342 ~~-------------~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~-~g~~~v-Lv~T~ 405 (510)
T 2oca_A 342 KL-------------AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAE-NGKGII-IVASY 405 (510)
T ss_dssp HH-------------HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHH-HCCSCE-EEEEH
T ss_pred HH-------------HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHh-CCCCCE-EEEEc
Confidence 10 1134567777877 88888999999999889999999999999999999999 677888 5555
Q ss_pred cccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCC-eEEEEEEeeCCChHHHH
Q 001912 590 TAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTS-AVNIYIFCAKDTTDESH 647 (997)
Q Consensus 590 ~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k-~V~Vy~Li~~gTiEe~i 647 (997)
.++++|+|++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.+
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 99999999999999999999999999999999999999987 79999999987755544
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=338.35 Aligned_cols=405 Identities=17% Similarity=0.211 Sum_probs=224.5
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh---C----CcEEEEeCc-chHHHH-HHHHHHHCCCCC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---A----GSILVVCPA-ILRLSW-AEELERWLPFCL 270 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~---~----gp~LIV~P~-sL~~qW-~~Ei~k~~p~~~ 270 (997)
.|+|||.+++.+++. |.++|++++||+|||++++..+..++. . +++|||+|+ +|+.|| .+++.+|++..
T Consensus 7 ~l~~~Q~~~i~~il~-g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~- 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE-GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW- 84 (699)
T ss_dssp CCCHHHHHHHHHHHS-SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT-
T ss_pred CccHHHHHHHHHHHh-CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC-
Confidence 799999999999987 678999999999999999887765432 2 789999998 799999 99999998751
Q ss_pred CceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHH--------HhhhhccccEEEeccccccccCCCCCcHHHHHHH
Q 001912 271 PADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLR--------KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339 (997)
Q Consensus 271 ~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~--------~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al 339 (997)
..+..+.|..... ..+....+|+|+|++.+.... ..+....|++|||||||++.+...-..- ...+
T Consensus 85 -~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i--~~~~ 161 (699)
T 4gl2_A 85 -YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI--MRHY 161 (699)
T ss_dssp -SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH--HHHH
T ss_pred -ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH--HHHH
Confidence 2455555543322 122346799999999998643 1234468999999999998543221111 1111
Q ss_pred HHH----Hh---------hcCcEEEEeccCCCCCh-------hHHHHHHHhhcc-CCccchh--HHHHHHhhcccccccc
Q 001912 340 LDV----AA---------KVKRIVLLSGTPSLSRP-------YDIFHQINMLWP-GLLGKAK--YDFAKTYCDVKTVQGY 396 (997)
Q Consensus 340 ~~l----~~---------~~~~~llLTGTPi~n~~-------~El~~ll~~l~p-~~~~~~~--~~F~~~~~~~~~~~~~ 396 (997)
... .. ..+++++|||||..++. .++..++..+++ .+..... .++......+......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 111 11 34679999999998643 344455555555 2221111 1121111111100000
Q ss_pred ccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCC
Q 001912 397 QGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKD 476 (997)
Q Consensus 397 ~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (997)
. . ......+...+.. +.......+ ++.+. ..+.. ..|...+..+...............
T Consensus 242 ~----~----~~~~~~~~~~l~~--l~~~i~~~~--~~~~~------~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (699)
T 4gl2_A 242 A----D----ATREDPFKEKLLE--IMTRIQTYC--QMSPM------SDFGT---QPYEQWAIQMEKKAAKEGNRKERVC 300 (699)
T ss_dssp E----C---------CHHHHHHH--HHHHHHHHH--TCCCC------SCSSS---HHHHHHHHHHHHHHHHHTCTTTHHH
T ss_pred c----c----cccCChHHHHHHH--HHHHHHHHh--ccCcc------hhccc---hHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 0 0 0000011111110 011111111 12110 01111 1122211111110000000000000
Q ss_pred CCccccch-------------hhhcccc----------------------cchh----------------------hhhh
Q 001912 477 SDEHDDSG-------------ACCRLGK----------------------ISYQ----------------------ELGI 499 (997)
Q Consensus 477 ~~~~~~~~-------------~~~~l~~----------------------l~~~----------------------~~~~ 499 (997)
........ ....+.. +... ....
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 380 (699)
T 4gl2_A 301 AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYEN 380 (699)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00000000 0000000 0000 0001
Q ss_pred hhhhhhhhhhccCccccccCccccccccCC-CCeEEEEeCCHHHHHHHHHHHHHc------CCeEEEEeCC--------C
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPR-SNKMIIFAHHLKVLDGVQEFISEK------GIGFVRIDGN--------T 564 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~KvLVFs~~~~~ld~L~~~L~~~------gi~~~~idG~--------~ 564 (997)
.|+..+.+++..+ ....+ +.++|||++++.+++.|.++|... |+++..+||+ +
T Consensus 381 ~k~~~L~~~L~~~------------~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~ 448 (699)
T 4gl2_A 381 EKLTKLRNTIMEQ------------YTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPM 448 (699)
T ss_dssp -CSSCSHHHHHHH------------HHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCC
T ss_pred HHHHHHHHHHHHH------------HhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCC
Confidence 1111222211110 00112 789999999999999999999987 8999999999 9
Q ss_pred CHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 565 LPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 565 s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
+..+|.+++++|+ +++++| |++|.++|+|||++++++||+||+||||..+.|++||++|.| ..++.+...++.+
T Consensus 449 ~~~eR~~~~~~F~-~g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 449 TQNEQKEVISKFR-TGKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGV 522 (699)
T ss_dssp CHHHHHHHHHHHC-C---CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCS
T ss_pred CHHHHHHHHHHHh-cCCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchH
Confidence 9999999999999 678888 889999999999999999999999999999999999986654 4455556666655
Q ss_pred HHHH
Q 001912 645 ESHW 648 (997)
Q Consensus 645 e~i~ 648 (997)
...+
T Consensus 523 ~~~~ 526 (699)
T 4gl2_A 523 IERE 526 (699)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=6.4e-32 Score=334.89 Aligned_cols=413 Identities=14% Similarity=0.163 Sum_probs=207.1
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-C-----CcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-A-----GSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~-----gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
...|+|||.+++.+++. |.++|++++||+|||++++..+..... . +++|||+|+ +|+.||.+++.++++...
T Consensus 11 ~~~lr~~Q~~~i~~~l~-g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~ 89 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHG 89 (696)
T ss_dssp --CCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCccHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCC
Confidence 35799999999999886 678999999999999999887765443 1 689999998 999999999999987432
Q ss_pred CceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--h-hhccccEEEeccccccccCCCCCcHHHHHHHH-HHH
Q 001912 271 PADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--M-IEQDWALLIVDESHHVRCSKRTSEPEEVKAVL-DVA 343 (997)
Q Consensus 271 ~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l-~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~-~l~ 343 (997)
..+..+.|..... ..+....+|+|+||+.+...... + ...+|++|||||||++++.. . +..+. ...
T Consensus 90 -~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~----~--~~~i~~~~l 162 (696)
T 2ykg_A 90 -YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH----P--YNMIMFNYL 162 (696)
T ss_dssp -CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC----H--HHHHHHHHH
T ss_pred -ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc----c--HHHHHHHHH
Confidence 2344555543222 12223679999999999886543 2 34678999999999997532 1 22222 111
Q ss_pred --------hhcCcEEEEeccCCCCC-------hhHHHHHHHhhccCCccch--hHHHHHHhhcccccc-----ccccchh
Q 001912 344 --------AKVKRIVLLSGTPSLSR-------PYDIFHQINMLWPGLLGKA--KYDFAKTYCDVKTVQ-----GYQGQLF 401 (997)
Q Consensus 344 --------~~~~~~llLTGTPi~n~-------~~El~~ll~~l~p~~~~~~--~~~F~~~~~~~~~~~-----~~~~~~~ 401 (997)
...+++++|||||..++ ..+++.++..++...+... ...+...|....... ......+
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 13478999999998554 3444444444433322111 112222222211000 0000000
Q ss_pred hhhhhhccHHHHHHHHH----------------------hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHH--
Q 001912 402 QDFSKGVRLEELNVLLK----------------------QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAA-- 457 (997)
Q Consensus 402 ~~~~~~~~~~eL~~~l~----------------------~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~-- 457 (997)
..... .-..++..+.. ..++.++.+.....++|.+.. +......+
T Consensus 243 s~~~~-~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~ 311 (696)
T 2ykg_A 243 KYIIA-QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE----------ESRICKALFL 311 (696)
T ss_dssp HHHHH-HHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CC----------HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchh----------hhHHHHHHHH
Confidence 00000 00000000000 011122222222222222111 00000000
Q ss_pred ----HHHHhhhccccCCCC---------------CCCCCCcc-c-cch----hhhcccccch-hhhhhhhhhhhhhhhcc
Q 001912 458 ----VGVINDSEKDATNDK---------------TPKDSDEH-D-DSG----ACCRLGKISY-QELGIAKLSGFREWLSI 511 (997)
Q Consensus 458 ----~~~~~~~~~~~~~~~---------------~~~~~~~~-~-~~~----~~~~l~~l~~-~~~~~~K~~~~~~~l~~ 511 (997)
+.............. ........ . ... ....+..+.. ......|+..+.+++..
T Consensus 312 ~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 312 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 000000000000000 00000000 0 000 0000000000 00123344444444432
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcC----CeEEEEe--------CCCCHHHHHHHHHHhccC
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG----IGFVRID--------GNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~g----i~~~~id--------G~~s~~eR~~~i~~F~~~ 579 (997)
+. ...++.++|||++++.+++.|.++|...| +++..++ |+++.++|.+++++|+++
T Consensus 392 ~~------------~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 392 EY------------HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HH------------TTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred Hh------------ccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 10 11357899999999999999999999988 8888885 499999999999999954
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHH
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDES 646 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~ 646 (997)
++.+| |++|.++|+|||++++++||+||+|||+..+.|++|| +|. +...+|.|+..+++++.
T Consensus 460 g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 460 GDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred CCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 78888 8999999999999999999999999999999999999 884 56778899998887664
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=4.3e-30 Score=295.40 Aligned_cols=329 Identities=17% Similarity=0.243 Sum_probs=221.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++.+++. +.++|+.++||+|||++++..+..... ..++|||||+ .|+.||.+++.+|........
T Consensus 29 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 107 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107 (391)
T ss_dssp CSCCHHHHHHHHHHTT-TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCC
T ss_pred CCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeE
Confidence 3699999999998887 677999999999999998877665532 3479999999 899999999999976543344
Q ss_pred EEEEccCCCCccc---c-cCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNPVH---L-TRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~~~---~-~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
+....|....... + ....+|+|+|++.+...... +...++++||+||||++.+.. ........+........
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~--~~~~~~~~~~~~~~~~~ 185 (391)
T 1xti_A 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL--DMRRDVQEIFRMTPHEK 185 (391)
T ss_dssp EEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSH--HHHHHHHHHHHTSCSSS
T ss_pred EEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhcc--chHHHHHHHHhhCCCCc
Confidence 5555554332111 1 12368999999999875443 223578999999999995310 01112222333222345
Q ss_pred cEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhc-cccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 348 ~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
+++++||||-.. ..+ +...+.. +.... ...
T Consensus 186 ~~i~~SAT~~~~-~~~-------------------~~~~~~~~~~~~~-~~~---------------------------- 216 (391)
T 1xti_A 186 QVMMFSATLSKE-IRP-------------------VCRKFMQDPMEIF-VDD---------------------------- 216 (391)
T ss_dssp EEEEEESSCCST-HHH-------------------HHHHHCSSCEEEE-CCC----------------------------
T ss_pred eEEEEEeeCCHH-HHH-------------------HHHHHcCCCeEEE-ecC----------------------------
Confidence 689999998532 111 1111110 00000 000
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
............. ..... ..|...+.
T Consensus 217 --~~~~~~~~~~~~~--~~~~~--------------------------------------------------~~~~~~l~ 242 (391)
T 1xti_A 217 --ETKLTLHGLQQYY--VKLKD--------------------------------------------------NEKNRKLF 242 (391)
T ss_dssp --CCCCCCTTCEEEE--EECCG--------------------------------------------------GGHHHHHH
T ss_pred --ccccCcccceEEE--EEcCc--------------------------------------------------hhHHHHHH
Confidence 0000000000111 11110 11122222
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
+++.. ..+.|+|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++..| |
T Consensus 243 ~~l~~----------------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~v-l 304 (391)
T 1xti_A 243 DLLDV----------------LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRI-L 304 (391)
T ss_dssp HHHHH----------------SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTCCSE-E
T ss_pred HHHHh----------------cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh-cCCCcE-E
Confidence 22321 24679999999999999999999999999999999999999999999999 677787 8
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
++|.++++|+|++++++||++|+||++..+.|++||++|.|+...+.++ +.. .-++.+++.+.++
T Consensus 305 v~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~--~~~-~~~~~~~~~~~~~ 369 (391)
T 1xti_A 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF--VSD-ENDAKILNDVQDR 369 (391)
T ss_dssp EESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE--ECS-HHHHHHHHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE--Ecc-cchHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999977655444 332 2244555555443
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-29 Score=287.70 Aligned_cols=311 Identities=16% Similarity=0.208 Sum_probs=218.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..|+|||.+++.+++..+.++|+..+||+|||++++..+..+.. ..++|||+|+ +|+.||.+++.++++... ..+
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v 105 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKN-LKI 105 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC-CCE
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceE
Confidence 37999999999999885568999999999999998877666543 3479999999 899999999999976532 234
Q ss_pred EEEccCCCCccc--ccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEE
Q 001912 275 HLVFGHRNNPVH--LTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350 (997)
Q Consensus 275 ~~~~g~~~~~~~--~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~l 350 (997)
....+....... .....+|+|+||+.+...... +...+|++||+||||++.+.. .......+........+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~---~~~~~~~~~~~~~~~~~~i 182 (367)
T 1hv8_A 106 AKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG---FIKDVEKILNACNKDKRIL 182 (367)
T ss_dssp EEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT---THHHHHHHHHTSCSSCEEE
T ss_pred EEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc---hHHHHHHHHHhCCCCceEE
Confidence 444443322111 112578999999999875543 223578999999999987532 1233344444333457789
Q ss_pred EEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 351 lLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
+|||||... +...+. .|..... + +
T Consensus 183 ~~SAT~~~~----~~~~~~----------------~~~~~~~----------------------------~--------~ 206 (367)
T 1hv8_A 183 LFSATMPRE----ILNLAK----------------KYMGDYS----------------------------F--------I 206 (367)
T ss_dssp EECSSCCHH----HHHHHH----------------HHCCSEE----------------------------E--------E
T ss_pred EEeeccCHH----HHHHHH----------------HHcCCCe----------------------------E--------E
Confidence 999998421 111111 1100000 0 0
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
....+....+. .+.... ..+...+.+++.
T Consensus 207 ~~~~~~~~~~~-~~~~~~--------------------------------------------------~~~~~~l~~~l~ 235 (367)
T 1hv8_A 207 KAKINANIEQS-YVEVNE--------------------------------------------------NERFEALCRLLK 235 (367)
T ss_dssp ECCSSSSSEEE-EEECCG--------------------------------------------------GGHHHHHHHHHC
T ss_pred EecCCCCceEE-EEEeCh--------------------------------------------------HHHHHHHHHHHh
Confidence 00000000110 111110 111222222221
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ 590 (997)
..+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++..| |++|.
T Consensus 236 -----------------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~v-lv~T~ 296 (367)
T 1hv8_A 236 -----------------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK-QKKIRI-LIATD 296 (367)
T ss_dssp -----------------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHH-TTSSSE-EEECT
T ss_pred -----------------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH-cCCCeE-EEECC
Confidence 34678999999999999999999999999999999999999999999999 677888 88999
Q ss_pred ccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 591 AGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 591 agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
++++|+|++++++||+++++||+..+.|++||++|.|+...+.++ +.+.
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~--~~~~ 345 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI--INRR 345 (367)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE--ECTT
T ss_pred hhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE--EcHH
Confidence 999999999999999999999999999999999999987655444 4444
No 17
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=1.5e-30 Score=316.18 Aligned_cols=349 Identities=16% Similarity=0.151 Sum_probs=202.2
Q ss_pred hccChhhHHHHHHHHHh----cCCCeEEEcCCCchHHHHHHHHHHHHhh----------CCcEEEEeCc-chHHHHH-HH
Q 001912 198 LDVILPFQLEGVRFGLR----RGGRCLIADEMGLGKTLQAIAIAACFIS----------AGSILVVCPA-ILRLSWA-EE 261 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~----~~g~~ILaDemGLGKTlqaial~~~~~~----------~gp~LIV~P~-sL~~qW~-~E 261 (997)
...|+|||.+++.+++. .++++||+++||+|||++++.++..+.. ..++|||||+ +|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 35899999999999765 3456899999999999999998877654 3469999996 8999999 77
Q ss_pred HHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHH------hhhhccccEEEeccccccccCCCCCcHHH
Q 001912 262 LERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRK------SMIEQDWALLIVDESHHVRCSKRTSEPEE 335 (997)
Q Consensus 262 i~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~------~l~~~~~~~VIvDEaH~iKN~~~~~~s~~ 335 (997)
+..|.+. +..+.+.. .....+|+|+||+.+..... .+....|++|||||||++.+.. ...
T Consensus 256 ~~~~~~~-----~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----~~~ 321 (590)
T 3h1t_A 256 FTPFGDA-----RHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----NSN 321 (590)
T ss_dssp CTTTCSS-----EEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-------------
T ss_pred HHhcchh-----hhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc----hHH
Confidence 7776542 22222211 22367899999999987532 2334579999999999996421 233
Q ss_pred HHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHH
Q 001912 336 VKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNV 415 (997)
Q Consensus 336 ~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~ 415 (997)
++.+.... ...++++|||||..+...+++.++. +..+. +.+. .
T Consensus 322 ~~~il~~~-~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~---~~~~------------------------------~ 364 (590)
T 3h1t_A 322 WREILEYF-EPAFQIGMTATPLREDNRDTYRYFG---NPIYT---YSLR------------------------------Q 364 (590)
T ss_dssp CHHHHHHS-TTSEEEEEESSCSCTTTHHHHHHSC---SCSEE---ECHH------------------------------H
T ss_pred HHHHHHhC-CcceEEEeccccccccchhHHHHcC---CceEe---cCHH------------------------------H
Confidence 55555554 3467899999999887665544331 11110 0000 0
Q ss_pred HHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchh
Q 001912 416 LLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQ 495 (997)
Q Consensus 416 ~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 495 (997)
.+. + ..+++.....+...................... ... .......+...
T Consensus 365 ~i~----------~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-----~~~~~~~~~~~ 415 (590)
T 3h1t_A 365 GID----------D--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE------------IPD-----GEYQTKDFERV 415 (590)
T ss_dssp HHH----------H--TSSCCEEEEEEEETTCC----------------------------------------CCSHHHH
T ss_pred Hhh----------C--CccCCcEEEEeeeeeeccccccccccccccccc------------ccc-----ccCCHHHhhhH
Confidence 000 0 123333333333332221111110000000000 000 00000000000
Q ss_pred hhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCe--------EEEEeCCCCHH
Q 001912 496 ELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG--------FVRIDGNTLPR 567 (997)
Q Consensus 496 ~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~--------~~~idG~~s~~ 567 (997)
.....+...+.+.+..+ + .....+.|+||||+.+.+++.|.+.|...+.. +..++|.++ +
T Consensus 416 ~~~~~r~~~i~~~l~~~--l---------~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~ 483 (590)
T 3h1t_A 416 IALKARTDAFAKHLTDF--M---------KRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-K 483 (590)
T ss_dssp HHHHHTHHHHHHHHHHH--H---------HHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-H
T ss_pred hcChHHHHHHHHHHHHH--H---------HhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-H
Confidence 00011111111111110 0 01145689999999999999999999876543 678999985 3
Q ss_pred HHHHHHHHhccCC-CceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCC---CCeEEEEEEe
Q 001912 568 DRQSAVHSFQLSN-EVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ---TSAVNIYIFC 638 (997)
Q Consensus 568 eR~~~i~~F~~~~-~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ---~k~V~Vy~Li 638 (997)
+|++++++|++.. ...++|+|++++++|+|++.+++||+++++||+..+.|++||++|.|+ +..+.||.++
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 6999999999533 266779999999999999999999999999999999999999999995 5568888876
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1e-29 Score=285.88 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=214.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..|+|||.+++.+++. ++++++..+||+|||++++..+.. ...++|||+|+ +|+.||.+++.+|.+.... .+...
T Consensus 15 ~~l~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~-~~~~~ 90 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ-GKNVVVRAKTGSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDT-KVAEV 90 (337)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCC-CEEEE
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEcCCCCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCC-cEEEE
Confidence 3689999999998886 678999999999999988776654 36789999999 8999999999999765432 34444
Q ss_pred ccCCCCcc--cccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 278 FGHRNNPV--HLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 278 ~g~~~~~~--~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
.+...... ......+|+|+|++.+...... +...+|++||+||||++.+.. .......+..........+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~---~~~~~~~~~~~~~~~~~~~~~S 167 (337)
T 2z0m_A 91 YGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG---FIDDIKIILAQTSNRKITGLFS 167 (337)
T ss_dssp CTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT---CHHHHHHHHHHCTTCSEEEEEE
T ss_pred ECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc---cHHHHHHHHhhCCcccEEEEEe
Confidence 44332211 1112478999999999875432 233678999999999986532 2233444444443455667889
Q ss_pred ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433 (997)
Q Consensus 354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~ 433 (997)
|||.. ++...+. .|..... . .. . ...
T Consensus 168 AT~~~----~~~~~~~----------------~~~~~~~------~----~~-------------~-----------~~~ 193 (337)
T 2z0m_A 168 ATIPE----EIRKVVK----------------DFITNYE------E----IE-------------A-----------CIG 193 (337)
T ss_dssp SCCCH----HHHHHHH----------------HHSCSCE------E----EE-------------C-----------SGG
T ss_pred CcCCH----HHHHHHH----------------HhcCCce------e----ee-------------c-----------ccc
Confidence 99842 1111111 1100000 0 00 0 000
Q ss_pred CCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCc
Q 001912 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 434 LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~ 513 (997)
.+......+. ....... ..+.+.
T Consensus 194 ~~~~~~~~~~--~~~~~~~----------------------------------------------------~~~~~~--- 216 (337)
T 2z0m_A 194 LANVEHKFVH--VKDDWRS----------------------------------------------------KVQALR--- 216 (337)
T ss_dssp GGGEEEEEEE--CSSSSHH----------------------------------------------------HHHHHH---
T ss_pred cCCceEEEEE--eChHHHH----------------------------------------------------HHHHHH---
Confidence 0000011111 1000000 000111
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG 593 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg 593 (997)
...+.++|||++....++.+.+.|. .+..+||+++..+|.++++.|+ +++.+| |++|.+++
T Consensus 217 -------------~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~-~~~~~v-lv~T~~~~ 277 (337)
T 2z0m_A 217 -------------ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR-EGEYDM-LITTDVAS 277 (337)
T ss_dssp -------------TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH-TTSCSE-EEECHHHH
T ss_pred -------------hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH-cCCCcE-EEEcCccc
Confidence 1347789999999999999998886 5788999999999999999999 677888 88999999
Q ss_pred cccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHH
Q 001912 594 VGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 594 ~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
+|+|++++++||++++|||+..+.|++||++|.|+...+.+|.. .+.++.+.+.+.+.
T Consensus 278 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888877776 55455555554443
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1.2e-28 Score=284.40 Aligned_cols=310 Identities=17% Similarity=0.207 Sum_probs=213.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++.+++. +.++|+..+||+|||++++..+..... ..++|||||+ .|+.||.+++.++.+.... .
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~ 119 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT-GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI-S 119 (400)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-C
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc-e
Confidence 3699999999999887 567999999999999998776665442 3479999999 8999999999999875432 3
Q ss_pred EEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh---h
Q 001912 274 IHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA---K 345 (997)
Q Consensus 274 i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~---~ 345 (997)
+....+..... .......+|+|+|++.+...... ....++++||+||||++.+ ......+..+.. .
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~------~~~~~~~~~i~~~~~~ 193 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS------RDFKTIIEQILSFLPP 193 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS------HHHHHHHHHHHTTSCS
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh------hchHHHHHHHHHhCCc
Confidence 44444433221 12234678999999998765432 2235689999999999853 222333333322 3
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhc-cccccccccchhhhhhhhccHHHHHHHHHhHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIR 424 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lR 424 (997)
..++++||||+-. ++.. +...+.. +...
T Consensus 194 ~~~~i~lSAT~~~----~~~~----------------~~~~~~~~~~~~------------------------------- 222 (400)
T 1s2m_A 194 THQSLLFSATFPL----TVKE----------------FMVKHLHKPYEI------------------------------- 222 (400)
T ss_dssp SCEEEEEESCCCH----HHHH----------------HHHHHCSSCEEE-------------------------------
T ss_pred CceEEEEEecCCH----HHHH----------------HHHHHcCCCeEE-------------------------------
Confidence 4578999999731 1111 1111000 0000
Q ss_pred HHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhh
Q 001912 425 RLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSG 504 (997)
Q Consensus 425 R~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~ 504 (997)
.+...+.............. ..|...
T Consensus 223 ----~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~k~~~ 248 (400)
T 1s2m_A 223 ----NLMEELTLKGITQYYAFVEE--------------------------------------------------RQKLHC 248 (400)
T ss_dssp ----SCCSSCBCTTEEEEEEECCG--------------------------------------------------GGHHHH
T ss_pred ----EeccccccCCceeEEEEech--------------------------------------------------hhHHHH
Confidence 00000000000011111110 011122
Q ss_pred hhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceE
Q 001912 505 FREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKI 584 (997)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~V 584 (997)
+..++.. ..+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+|
T Consensus 249 l~~~~~~----------------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~v 311 (400)
T 1s2m_A 249 LNTLFSK----------------LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR-QGKVRT 311 (400)
T ss_dssp HHHHHHH----------------SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH-TTSSSE
T ss_pred HHHHHhh----------------cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh-cCCCcE
Confidence 2222221 23569999999999999999999999999999999999999999999998 677888
Q ss_pred EEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 585 AIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 585 lLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|++|.++++|+|++++++||++|++||+..+.|++||++|.|+... ++.|+..+
T Consensus 312 -Lv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 312 -LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp -EEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred -EEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 8899999999999999999999999999999999999999997644 44555554
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3e-29 Score=290.65 Aligned_cols=316 Identities=17% Similarity=0.238 Sum_probs=215.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++.+++. +.++|+..+||+|||++++..+.... ...++|||+|+ .|+.||.+++.+|...... .
T Consensus 58 ~~~~~~Q~~ai~~i~~-~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~ 135 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV-Q 135 (410)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-C
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe-E
Confidence 3699999999999886 56799999999999999887766543 34579999999 8999999999999865432 3
Q ss_pred EEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 274 IHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 274 i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
+....|...... .+....+|+|+|++.+...... +....+++||+||||++.+.. .......+........+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~---~~~~~~~i~~~~~~~~~ 212 (410)
T 2j0s_A 136 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG---FKEQIYDVYRYLPPATQ 212 (410)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT---THHHHHHHHTTSCTTCE
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh---hHHHHHHHHHhCccCce
Confidence 344444332211 1223568999999998765443 333578999999999986532 12333333333334567
Q ss_pred EEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 349 IVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 349 ~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
++++||||-. ++..++.. .+.. +.... . .
T Consensus 213 ~i~~SAT~~~----~~~~~~~~----~~~~-----------~~~~~---------~----------------------~- 241 (410)
T 2j0s_A 213 VVLISATLPH----EILEMTNK----FMTD-----------PIRIL---------V----------------------K- 241 (410)
T ss_dssp EEEEESCCCH----HHHTTGGG----TCSS-----------CEEEC---------C----------------------C-
T ss_pred EEEEEcCCCH----HHHHHHHH----HcCC-----------CEEEE---------e----------------------c-
Confidence 8999999842 11111110 0000 00000 0 0
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
.....++......+.+. ... .|...+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~--~~~-------------------------------------------------~k~~~l~~~ 270 (410)
T 2j0s_A 242 RDELTLEGIKQFFVAVE--REE-------------------------------------------------WKFDTLCDL 270 (410)
T ss_dssp GGGCSCTTEEEEEEEES--STT-------------------------------------------------HHHHHHHHH
T ss_pred CccccCCCceEEEEEeC--cHH-------------------------------------------------hHHHHHHHH
Confidence 00000111111111111 100 011112222
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+.. ....++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+| |++
T Consensus 271 ~~~----------------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~~v-lv~ 332 (410)
T 2j0s_A 271 YDT----------------LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR-SGASRV-LIS 332 (410)
T ss_dssp HHH----------------HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-HTSSCE-EEE
T ss_pred HHh----------------cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH-CCCCCE-EEE
Confidence 221 12458999999999999999999999999999999999999999999999 567777 889
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|.++++|+|++++++||++|+||++..+.|++||++|.|+... ++.|+...
T Consensus 333 T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 333 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp CGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 9999999999999999999999999999999999999997643 44555554
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.3e-28 Score=282.83 Aligned_cols=313 Identities=16% Similarity=0.175 Sum_probs=213.8
Q ss_pred ccChhhHHHHHHHHHhcC-CCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRRG-GRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~-g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..|+|||.+++..++..+ .++|+..+||+|||++++..+.... ..+++|||+|+ .|+.||.+++.++......
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~- 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI- 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC-
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe-
Confidence 479999999999988742 6899999999999999887665543 24579999999 7999999999998765432
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~l 350 (997)
.+....+...... .....+|+|+|++.+...... +...++++||+||||++.+.. ........+........+++
T Consensus 105 ~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~~~~~~~~~~i 181 (395)
T 3pey_A 105 TSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ--GLGDQCIRVKRFLPKDTQLV 181 (395)
T ss_dssp CEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHST--THHHHHHHHHHTSCTTCEEE
T ss_pred eEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcc--ccHHHHHHHHHhCCCCcEEE
Confidence 3333433332222 223578999999999775432 223578999999999986421 12233344444433456789
Q ss_pred EEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 351 lLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
++||||.. .+......+.+.. .... .. .
T Consensus 182 ~~SAT~~~----~~~~~~~~~~~~~---------------~~~~-~~-------------------------------~- 209 (395)
T 3pey_A 182 LFSATFAD----AVRQYAKKIVPNA---------------NTLE-LQ-------------------------------T- 209 (395)
T ss_dssp EEESCCCH----HHHHHHHHHSCSC---------------EEEC-CC-------------------------------G-
T ss_pred EEEecCCH----HHHHHHHHhCCCC---------------eEEE-cc-------------------------------c-
Confidence 99999841 1111111110000 0000 00 0
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
....++...+. ....... ..+...+..++.
T Consensus 210 ~~~~~~~~~~~-~~~~~~~-------------------------------------------------~~~~~~l~~~~~ 239 (395)
T 3pey_A 210 NEVNVDAIKQL-YMDCKNE-------------------------------------------------ADKFDVLTELYG 239 (395)
T ss_dssp GGCSCTTEEEE-EEECSSH-------------------------------------------------HHHHHHHHHHHT
T ss_pred cccccccccEE-EEEcCch-------------------------------------------------HHHHHHHHHHHH
Confidence 00001111111 1111110 001111111121
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ 590 (997)
. ..+.++|||++....++.+.+.|...|+.+..+||+++..+|.++++.|+ +++.+| |++|.
T Consensus 240 ~----------------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~v-lv~T~ 301 (395)
T 3pey_A 240 L----------------MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKV-LITTN 301 (395)
T ss_dssp T----------------TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-TTSCCE-EEECG
T ss_pred h----------------ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH-CCCCCE-EEECC
Confidence 1 23579999999999999999999999999999999999999999999999 677887 89999
Q ss_pred ccccccCcccccEEEEecCCC------CccHHhhHHHhhhhcCCCCeEEEE
Q 001912 591 AGGVGLDFSSAQNVVFLELPQ------SPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 591 agg~GLNL~~A~~VI~~D~~w------np~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
++++|+|++++++||++|+|| ++..+.|++||++|.|+...+.++
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 999999999999999999999 999999999999999976554443
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=7.9e-28 Score=278.39 Aligned_cols=331 Identities=12% Similarity=0.145 Sum_probs=222.6
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..++|||.+++..++.. +.++|+..+||+|||++++..+..... ...+|||+|+ .|+.||.+.+.++.......
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 125 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccc
Confidence 47999999999998874 468999999999999998665544332 2269999999 79999999999987654444
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
.+....+............+|+|+|++.+...... +...++++||+||||++-... ........+........++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~~~~~~~~~~~ 203 (412)
T 3fht_A 126 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ--GHQDQSIRIQRMLPRNCQM 203 (412)
T ss_dssp CEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTT--TTHHHHHHHHHTSCTTCEE
T ss_pred eEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcC--CcHHHHHHHHhhCCCCceE
Confidence 55555554433333334578999999999776532 223579999999999985321 2233444444444445678
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~ 429 (997)
+++||||-. +++.+.. .+.......... .
T Consensus 204 i~~SAT~~~----~~~~~~~----------------~~~~~~~~~~~~-------------------------------~ 232 (412)
T 3fht_A 204 LLFSATFED----SVWKFAQ----------------KVVPDPNVIKLK-------------------------------R 232 (412)
T ss_dssp EEEESCCCH----HHHHHHH----------------HHSSSCEEECCC-------------------------------G
T ss_pred EEEEeecCH----HHHHHHH----------------HhcCCCeEEeec-------------------------------c
Confidence 999999842 2222221 111000000000 0
Q ss_pred hhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhh
Q 001912 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509 (997)
Q Consensus 430 v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l 509 (997)
....+....+.+. ..... ..+...+.+++
T Consensus 233 -~~~~~~~~~~~~~-~~~~~-------------------------------------------------~~~~~~l~~~~ 261 (412)
T 3fht_A 233 -EEETLDTIKQYYV-LCSSR-------------------------------------------------DEKFQALCNLY 261 (412)
T ss_dssp -GGSSCTTEEEEEE-ECSSH-------------------------------------------------HHHHHHHHHHH
T ss_pred -ccccccCceEEEE-EcCCh-------------------------------------------------HHHHHHHHHHH
Confidence 0001111111111 11110 01111122222
Q ss_pred ccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec
Q 001912 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589 (997)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt 589 (997)
.. ..+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+| |++|
T Consensus 262 ~~----------------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~v-lv~T 323 (412)
T 3fht_A 262 GA----------------ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKV-LVTT 323 (412)
T ss_dssp HH----------------HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH-TTSCSE-EEEC
T ss_pred hh----------------cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH-CCCCcE-EEEc
Confidence 11 13568999999999999999999999999999999999999999999999 677887 8999
Q ss_pred cccccccCcccccEEEEecCCCCc------cHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 590 TAGGVGLDFSSAQNVVFLELPQSP------SLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 590 ~agg~GLNL~~A~~VI~~D~~wnp------~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
.++++|+|++++++||++|+||++ ..+.|++||++|.|+...+ +.++.. .-|..++..++++
T Consensus 324 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 324 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp GGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHH
T ss_pred CccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHH
Confidence 999999999999999999999877 6999999999999976443 333332 2335555555444
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=285.98 Aligned_cols=316 Identities=16% Similarity=0.205 Sum_probs=201.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..++|||.+++..++. |.++|+..+||+|||++++..+.... ...++|||+|+ .|+.||.+++.++..... ..
T Consensus 61 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~ 138 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK-GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-AS 138 (414)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC-CC
T ss_pred CCCCHHHHHHhHHHhC-CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC-ce
Confidence 3689999999988886 66799999999999999876665543 34579999999 899999999999875432 23
Q ss_pred EEEEccCCCCccc---c-cCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNPVH---L-TRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~~~---~-~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
+....+....... + ....+|+|+|++.+...... +....+++||+||||++.+.. .......+........
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~---~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 139 CHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG---FKDQIYDIFQKLNSNT 215 (414)
T ss_dssp EEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT---THHHHHHHHTTSCTTC
T ss_pred EEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC---cHHHHHHHHHhCCCCC
Confidence 4444443322111 1 14578999999998775443 333568999999999986422 1223333333333456
Q ss_pred cEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHh
Q 001912 348 RIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLK 427 (997)
Q Consensus 348 ~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k 427 (997)
++++|||||-. ++..++.. .+.. +.... ..
T Consensus 216 ~~i~~SAT~~~----~~~~~~~~----~~~~-----------~~~~~-~~------------------------------ 245 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTKK----FMRD-----------PIRIL-VK------------------------------ 245 (414)
T ss_dssp EEEEECSCCCH----HHHHHHTT----TCSS-----------CEEEC-CC------------------------------
T ss_pred eEEEEEEecCH----HHHHHHHH----HcCC-----------CEEEE-ec------------------------------
Confidence 78999999831 11111110 0000 00000 00
Q ss_pred hhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhh
Q 001912 428 QHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFRE 507 (997)
Q Consensus 428 ~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~ 507 (997)
......+......+.+. . ...+...+.+
T Consensus 246 -~~~~~~~~~~~~~~~~~--~-------------------------------------------------~~~~~~~l~~ 273 (414)
T 3eiq_A 246 -KEELTLEGIRQFYINVE--R-------------------------------------------------EEWKLDTLCD 273 (414)
T ss_dssp -CCCCCTTSCCEEEEECS--S-------------------------------------------------STTHHHHHHH
T ss_pred -CCccCCCCceEEEEEeC--h-------------------------------------------------HHhHHHHHHH
Confidence 00000000001111100 0 0012222333
Q ss_pred hhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEE
Q 001912 508 WLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587 (997)
Q Consensus 508 ~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLl 587 (997)
++.. ..+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+| |+
T Consensus 274 ~~~~----------------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~~v-lv 335 (414)
T 3eiq_A 274 LYET----------------LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR-SGSSRV-LI 335 (414)
T ss_dssp HHHS----------------SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS-CC---C-EE
T ss_pred HHHh----------------CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH-cCCCcE-EE
Confidence 3322 23568999999999999999999999999999999999999999999998 677777 89
Q ss_pred eccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 588 GITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 588 St~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
+|.++++|||++++++||++|++||+..+.|++||++|.|+... +|.|+.++
T Consensus 336 ~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 336 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp ECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred ECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 99999999999999999999999999999999999999997654 44555554
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=3.6e-29 Score=287.91 Aligned_cols=315 Identities=16% Similarity=0.184 Sum_probs=111.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh----hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----SAGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~----~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++.+++. ++++++..+||+|||++++..+.... ...++|||||+ .|+.||.+++.++..... ..
T Consensus 42 ~~~~~~Q~~~i~~i~~-~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~ 119 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD-IK 119 (394)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CC
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-ee
Confidence 4799999999999887 57799999999999999765554433 24479999999 899999999999986543 23
Q ss_pred EEEEccCCCCccc--ccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 274 IHLVFGHRNNPVH--LTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 274 i~~~~g~~~~~~~--~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
+....|....... .....+|+|+|++.+...... +...++++||+||||++.+.. .......+........++
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~---~~~~~~~~~~~~~~~~~~ 196 (394)
T 1fuu_A 120 VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG---FKEQIYQIFTLLPPTTQV 196 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT---CHHHHHHHHHHSCTTCEE
T ss_pred EEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC---cHHHHHHHHHhCCCCceE
Confidence 4444443322111 111468999999998775432 223579999999999985422 233344555544455679
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhc-cccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCD-VKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQ 428 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~-~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~ 428 (997)
++|||||-. ++..++. .+.. +.... .. ..
T Consensus 197 i~~SAT~~~----~~~~~~~----------------~~~~~~~~~~-~~--------~~--------------------- 226 (394)
T 1fuu_A 197 VLLSATMPN----DVLEVTT----------------KFMRNPVRIL-VK--------KD--------------------- 226 (394)
T ss_dssp EEECSSCCH----HHHHHHH----------------HHCCSCEEEE-EC--------C----------------------
T ss_pred EEEEEecCH----HHHHHHH----------------HhcCCCeEEE-ec--------Cc---------------------
Confidence 999999842 1111111 1100 00000 00 00
Q ss_pred hhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhh
Q 001912 429 HLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREW 508 (997)
Q Consensus 429 ~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~ 508 (997)
..+............. ...+...+.++
T Consensus 227 ----~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~l~~~ 253 (394)
T 1fuu_A 227 ----ELTLEGIKQFYVNVEE-------------------------------------------------EEYKYECLTDL 253 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccCCCceEEEEEcCc-------------------------------------------------hhhHHHHHHHH
Confidence 0000000000000000 00011111111
Q ss_pred hccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 509 LSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 509 l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
+. ...+.|+|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+| |++
T Consensus 254 ~~----------------~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~v-lv~ 315 (394)
T 1fuu_A 254 YD----------------SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRI-LIS 315 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hh----------------cCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH-CCCCcE-EEE
Confidence 11 123568999999999999999999999999999999999999999999998 667777 889
Q ss_pred ccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 589 ITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 589 t~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|.++++|+|++++++||++|++|++..+.|++||++|.|+...+.+ |+.+.
T Consensus 316 T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp -----------------------------------------------------
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 9999999999999999999999999999999999999997654443 44444
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=5.8e-27 Score=273.68 Aligned_cols=310 Identities=19% Similarity=0.259 Sum_probs=210.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHhh--------CCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFIS--------AGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~~--------~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
..++|+|.+++..++. |..+|+..+||+|||+.++..+. .+.. ...+|||+|+ .|..||.+++.++...
T Consensus 77 ~~pt~iQ~~ai~~i~~-g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 155 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS-GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE 155 (434)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhcc
Confidence 4689999999998875 67899999999999998776443 3332 2369999999 8999999999999764
Q ss_pred CCCceEEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 269 CLPADIHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
... .+....|.... ...+....+|+|+|++.+...... +.-.++++||+||||++.+.. -...+..+....
T Consensus 156 ~~~-~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g---f~~~~~~i~~~~ 231 (434)
T 2db3_A 156 SYL-KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG---FSEDMRRIMTHV 231 (434)
T ss_dssp SSC-CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT---THHHHHHHHHCT
T ss_pred CCc-EEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC---cHHHHHHHHHhc
Confidence 322 23333443321 122334679999999999775442 223578999999999986432 122333443321
Q ss_pred --hhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHH
Q 001912 344 --AKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTV 421 (997)
Q Consensus 344 --~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~ 421 (997)
....+++++|||+- .++..+... .+... .... . .
T Consensus 232 ~~~~~~q~l~~SAT~~----~~~~~~~~~----~l~~~-----------~~i~---------~--~-------------- 267 (434)
T 2db3_A 232 TMRPEHQTLMFSATFP----EEIQRMAGE----FLKNY-----------VFVA---------I--G-------------- 267 (434)
T ss_dssp TSCSSCEEEEEESCCC----HHHHHHHHT----TCSSC-----------EEEE---------E--S--------------
T ss_pred CCCCCceEEEEeccCC----HHHHHHHHH----hccCC-----------EEEE---------e--c--------------
Confidence 23456899999973 222222110 00000 0000 0 0
Q ss_pred HHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhh
Q 001912 422 MIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAK 501 (997)
Q Consensus 422 ~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K 501 (997)
. .........+.+. .... ..|
T Consensus 268 -------~-~~~~~~~i~~~~~-~~~~--------------------------------------------------~~k 288 (434)
T 2db3_A 268 -------I-VGGACSDVKQTIY-EVNK--------------------------------------------------YAK 288 (434)
T ss_dssp -------S-TTCCCTTEEEEEE-ECCG--------------------------------------------------GGH
T ss_pred -------c-ccccccccceEEE-EeCc--------------------------------------------------HHH
Confidence 0 0000111111111 1111 112
Q ss_pred hhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCC
Q 001912 502 LSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNE 581 (997)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~ 581 (997)
...+.+++.. .+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ .++
T Consensus 289 ~~~l~~~l~~-----------------~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~-~g~ 350 (434)
T 2db3_A 289 RSKLIEILSE-----------------QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK-NGS 350 (434)
T ss_dssp HHHHHHHHHH-----------------CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHh-----------------CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHH-cCC
Confidence 2222222321 1234999999999999999999999999999999999999999999999 677
Q ss_pred ceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 582 VKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 582 ~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
..| |++|.++++|||++++++||+||+|+++..+.|++||++|.|+...+.++
T Consensus 351 ~~v-LvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 351 MKV-LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp CSE-EEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CcE-EEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 888 89999999999999999999999999999999999999999986544443
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=274.99 Aligned_cols=316 Identities=19% Similarity=0.234 Sum_probs=208.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHhhC---------------------CcEEEEeCc-chH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFISA---------------------GSILVVCPA-ILR 255 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~~~---------------------gp~LIV~P~-sL~ 255 (997)
..|+|+|.+++..++. +..+|+..+||+|||+.++..+. .+... ..+|||+|+ .|+
T Consensus 36 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 114 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELA 114 (417)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHH
Confidence 4799999999987765 67899999999999998765433 32211 348999999 899
Q ss_pred HHHHHHHHHHCCCCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCC
Q 001912 256 LSWAEELERWLPFCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRT 330 (997)
Q Consensus 256 ~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~ 330 (997)
.||.+++.++..... ..+....|..... ..+....+|+|+|++.+...... +....+++||+||||++....
T Consensus 115 ~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~-- 191 (417)
T 2i4i_A 115 VQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG-- 191 (417)
T ss_dssp HHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--
T ss_pred HHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC--
Confidence 999999999875432 2344444433221 12334678999999999875543 223568999999999986422
Q ss_pred CcHHHHHHHHHHHh----hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhh
Q 001912 331 SEPEEVKAVLDVAA----KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSK 406 (997)
Q Consensus 331 ~~s~~~~al~~l~~----~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 406 (997)
-......+..... ...+++++||||-. ++..++. .+...... ...
T Consensus 192 -~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~----------------~~~~~~~~--------~~~-- 240 (417)
T 2i4i_A 192 -FEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR----------------DFLDEYIF--------LAV-- 240 (417)
T ss_dssp -CHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH----------------HHCSSCEE--------EEE--
T ss_pred -cHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH----------------HHcCCCEE--------EEe--
Confidence 1222222222100 12457999999831 1111111 11100000 000
Q ss_pred hccHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhh
Q 001912 407 GVRLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGAC 486 (997)
Q Consensus 407 ~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (997)
. . ....++...+.+. .....
T Consensus 241 ~-----------~-----------~~~~~~~i~~~~~-~~~~~------------------------------------- 260 (417)
T 2i4i_A 241 G-----------R-----------VGSTSENITQKVV-WVEES------------------------------------- 260 (417)
T ss_dssp C--------------------------CCSSEEEEEE-ECCGG-------------------------------------
T ss_pred C-----------C-----------CCCCccCceEEEE-EeccH-------------------------------------
Confidence 0 0 0001111111111 11111
Q ss_pred hcccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCH
Q 001912 487 CRLGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLP 566 (997)
Q Consensus 487 ~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~ 566 (997)
.|...+.+++.. ...+.++|||++....++.+.+.|...|+.+..+||+++.
T Consensus 261 -------------~~~~~l~~~l~~---------------~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 261 -------------DKRSFLLDLLNA---------------TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp -------------GHHHHHHHHHHT---------------CCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred -------------hHHHHHHHHHHh---------------cCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 111112222221 1347799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 567 RDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 567 ~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
++|.++++.|+ +++.+| |++|.++++|+|++++++||++|+||++..+.|++||++|.|+... ++.|+.+.
T Consensus 313 ~~r~~~~~~f~-~g~~~v-lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (417)
T 2i4i_A 313 RDREEALHQFR-SGKSPI-LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 383 (417)
T ss_dssp HHHHHHHHHHH-HTSSCE-EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEE--EEEEECGG
T ss_pred HHHHHHHHHHH-cCCCCE-EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCce--EEEEEccc
Confidence 99999999998 667787 8899999999999999999999999999999999999999997643 44445443
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=7.1e-27 Score=271.29 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=218.2
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
.-.|+|||.+++..++. |.++|+..+||+|||+.++..+.... ..+.+|||+|+ .|+.||.+++.+|.+ ....+.
T Consensus 19 ~~~~~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~ 95 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIF 95 (414)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEE
T ss_pred CCCCCHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEE
Confidence 34789999999998876 56899999999999997666555444 45579999999 999999999999986 233455
Q ss_pred EEccCCCCc------ccccC-CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCC---------CCCcHHHHHHH
Q 001912 276 LVFGHRNNP------VHLTR-FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK---------RTSEPEEVKAV 339 (997)
Q Consensus 276 ~~~g~~~~~------~~~~~-~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~---------~~~~s~~~~al 339 (997)
.+.|..... ..+.. ..+|+|+|++.+......+...++++||+||||++.... .+........+
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 555544320 11222 379999999999877666666799999999999874211 01112214444
Q ss_pred HHHHh-----------hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhc
Q 001912 340 LDVAA-----------KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGV 408 (997)
Q Consensus 340 ~~l~~-----------~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (997)
..... ...+++++||||......+.+ ...+.....
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~------------------~~~~~~~~~---------------- 221 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL------------------FRDLLNFTV---------------- 221 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH------------------HHHHHSCCS----------------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH------------------HHHhhccCc----------------
Confidence 54443 456789999997655432111 000000000
Q ss_pred cHHHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhc
Q 001912 409 RLEELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCR 488 (997)
Q Consensus 409 ~~~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (997)
......+....+.+ +..
T Consensus 222 --------------------~~~~~~~~~i~~~~-~~~------------------------------------------ 238 (414)
T 3oiy_A 222 --------------------GRLVSVARNITHVR-ISS------------------------------------------ 238 (414)
T ss_dssp --------------------SCCCCCCCSEEEEE-ESS------------------------------------------
T ss_pred --------------------Cccccccccchhee-ecc------------------------------------------
Confidence 00000111111111 100
Q ss_pred ccccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEE-EEeCCCCHH
Q 001912 489 LGKISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV-RIDGNTLPR 567 (997)
Q Consensus 489 l~~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~-~idG~~s~~ 567 (997)
.+...+.+++.. .+.++|||++.+..++.+.+.|...|+.+. .+||.
T Consensus 239 -----------~~~~~l~~~l~~-----------------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~---- 286 (414)
T 3oiy_A 239 -----------RSKEKLVELLEI-----------------FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF---- 286 (414)
T ss_dssp -----------CCHHHHHHHHHH-----------------HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----
T ss_pred -----------CHHHHHHHHHHH-----------------cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----
Confidence 011112222221 146899999999999999999999999998 88984
Q ss_pred HHHHHHHHhccCCCceEEEEe---ccccccccCccc-ccEEEEecCC--CCccHHhhHHHhhhhcCCC--CeEEEEEEee
Q 001912 568 DRQSAVHSFQLSNEVKIAIIG---ITAGGVGLDFSS-AQNVVFLELP--QSPSLMLQAEDRAHRRGQT--SAVNIYIFCA 639 (997)
Q Consensus 568 eR~~~i~~F~~~~~~~VlLlS---t~agg~GLNL~~-A~~VI~~D~~--wnp~~~~Qa~gRa~RiGQ~--k~V~Vy~Li~ 639 (997)
+|+ ++.|+ +++++|++.+ |.++++|||+++ +++||++|+| +++..+.|++||++|.|+. +.-.++.|+
T Consensus 287 ~r~--~~~f~-~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~- 362 (414)
T 3oiy_A 287 EKN--FEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE- 362 (414)
T ss_dssp HHH--HHHHH-TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-
T ss_pred chH--HHHHh-CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-
Confidence 454 99999 7889994443 999999999999 9999999999 9999999999999999985 455566666
Q ss_pred CCChHHHHHHHHHHhHHHH
Q 001912 640 KDTTDESHWQNLNKSLRCV 658 (997)
Q Consensus 640 ~gTiEe~i~~~l~~K~~~i 658 (997)
-|..+++.+.+.+..+
T Consensus 363 ---~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 363 ---EDEEIFESLKTRLLLI 378 (414)
T ss_dssp ---CCHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHhccc
Confidence 3556666666665533
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=2.1e-26 Score=274.53 Aligned_cols=304 Identities=19% Similarity=0.214 Sum_probs=211.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.+++..++. |..+|+..+||+|||+.++..+. ...+.+|||+|. +|+.||.+++.++.- .+..+
T Consensus 24 ~~~r~~Q~~~i~~il~-g~d~lv~apTGsGKTl~~~lp~l--~~~g~~lvi~P~~aL~~q~~~~l~~~gi-----~~~~l 95 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSLCYQIPAL--LLNGLTVVVSPLISLMKDQVDQLQANGV-----AAACL 95 (523)
T ss_dssp SSCCTTHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHH--HSSSEEEEECSCHHHHHHHHHHHHHTTC-----CEEEE
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCcHHHHHHHHHHH--HhCCCEEEECChHHHHHHHHHHHHHcCC-----cEEEE
Confidence 4789999999999886 56899999999999997765443 346889999999 999999999998621 23344
Q ss_pred ccCCCCcc------c-ccCCCeEEEEehhHHHH--HHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh--hc
Q 001912 278 FGHRNNPV------H-LTRFPRVVVISYTMLHR--LRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA--KV 346 (997)
Q Consensus 278 ~g~~~~~~------~-~~~~~~VvItTy~~l~~--~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~--~~ 346 (997)
.+...... . .....+|+++|++.+.. ....+...++++|||||||.+...+.... ..+..+..+.. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr-~~~~~l~~l~~~~~~ 174 (523)
T 1oyw_A 96 NSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR-PEYAALGQLRQRFPT 174 (523)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCC-HHHHGGGGHHHHCTT
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccH-HHHHHHHHHHHhCCC
Confidence 33322111 0 12357899999999853 22334457899999999999965332211 12333322222 23
Q ss_pred CcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHH
Q 001912 347 KRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRL 426 (997)
Q Consensus 347 ~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~ 426 (997)
..+++|||||......++...+.+-.|..+...
T Consensus 175 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----------------------------------------------- 207 (523)
T 1oyw_A 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQISS----------------------------------------------- 207 (523)
T ss_dssp SCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC-----------------------------------------------
T ss_pred CCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC-----------------------------------------------
Confidence 568999999975443444433322111100000
Q ss_pred hhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhh
Q 001912 427 KQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFR 506 (997)
Q Consensus 427 k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~ 506 (997)
...|.. ...+. .. ..+...+.
T Consensus 208 -----~~r~~l-~~~v~-~~----------------------------------------------------~~~~~~l~ 228 (523)
T 1oyw_A 208 -----FDRPNI-RYMLM-EK----------------------------------------------------FKPLDQLM 228 (523)
T ss_dssp -----CCCTTE-EEEEE-EC----------------------------------------------------SSHHHHHH
T ss_pred -----CCCCce-EEEEE-eC----------------------------------------------------CCHHHHHH
Confidence 000110 00000 00 00111222
Q ss_pred hhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Q 001912 507 EWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI 586 (997)
Q Consensus 507 ~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL 586 (997)
+++.. ..+.++|||++.+..++.+.+.|...|+.+..+||+++.++|..+++.|+ ++++.| |
T Consensus 229 ~~l~~----------------~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~~v-l 290 (523)
T 1oyw_A 229 RYVQE----------------QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ-RDDLQI-V 290 (523)
T ss_dssp HHHHH----------------TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCSE-E
T ss_pred HHHHh----------------cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH-cCCCeE-E
Confidence 33322 24678999999999999999999999999999999999999999999999 677888 8
Q ss_pred EeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 587 IGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 587 lSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
++|.++|.|||++++++||++++|+|+..+.|++||++|.|+...+.++
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 8999999999999999999999999999999999999999987655443
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=8.3e-26 Score=272.30 Aligned_cols=309 Identities=16% Similarity=0.167 Sum_probs=209.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
..++|+|.+++..++. |..+|+..+||+|||+..+..+. ...+.+|||+|+ +|+.||.+.+.++. . .+..+
T Consensus 43 ~~~rp~Q~~~i~~il~-g~d~lv~~pTGsGKTl~~~lpal--~~~g~~lVisP~~~L~~q~~~~l~~~g--i---~~~~l 114 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA-GKEVFLVMPTGGGKSLCYQLPAL--CSDGFTLVICPLISLMEDQLMVLKQLG--I---SATML 114 (591)
T ss_dssp CSCCTTHHHHHHHHHT-TCCEEEECCTTSCTTHHHHHHHH--TSSSEEEEECSCHHHHHHHHHHHHHHT--C---CEEEC
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEEECCCChHHHHHHHHHH--HcCCcEEEEeCHHHHHHHHHHHHHhcC--C---cEEEE
Confidence 3789999999998887 66799999999999997665443 357889999999 99999999999972 1 23344
Q ss_pred ccCCCCcc------c---ccCCCeEEEEehhHHHH---HHHhh----hhccccEEEeccccccccCCC--CCcHHHHHHH
Q 001912 278 FGHRNNPV------H---LTRFPRVVVISYTMLHR---LRKSM----IEQDWALLIVDESHHVRCSKR--TSEPEEVKAV 339 (997)
Q Consensus 278 ~g~~~~~~------~---~~~~~~VvItTy~~l~~---~~~~l----~~~~~~~VIvDEaH~iKN~~~--~~~s~~~~al 339 (997)
.+...... . .....+|+|+|++.+.. ....+ ...++++|||||||.+..... .+.......+
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l 194 (591)
T 2v1x_A 115 NASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGIL 194 (591)
T ss_dssp CSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHH
T ss_pred eCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHH
Confidence 33322110 0 13467899999998742 22222 234899999999999865331 1111112223
Q ss_pred HHHHhhcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHh
Q 001912 340 LDVAAKVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQ 419 (997)
Q Consensus 340 ~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~ 419 (997)
.... ....+++|||||-..-..++...+..-.+..+..
T Consensus 195 ~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------------------------------------- 232 (591)
T 2v1x_A 195 KRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------------------------------------- 232 (591)
T ss_dssp HHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-----------------------------------------
T ss_pred HHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-----------------------------------------
Confidence 3332 2456899999995322222222211100000000
Q ss_pred HHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhh
Q 001912 420 TVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGI 499 (997)
Q Consensus 420 ~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 499 (997)
....|.....+.... .. ..
T Consensus 233 -----------~~~r~nl~~~v~~~~--~~------------------------------------------------~~ 251 (591)
T 2v1x_A 233 -----------SFNRPNLYYEVRQKP--SN------------------------------------------------TE 251 (591)
T ss_dssp -----------CCCCTTEEEEEEECC--SS------------------------------------------------HH
T ss_pred -----------CCCCcccEEEEEeCC--Cc------------------------------------------------HH
Confidence 000111111111000 00 00
Q ss_pred hhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 500 AKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 500 ~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
.++..+.+++.. ...+.++|||+..+..++.+.+.|...|+.+..+||+++.++|..+++.|. .
T Consensus 252 ~~~~~l~~~l~~---------------~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~-~ 315 (591)
T 2v1x_A 252 DFIEDIVKLING---------------RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS-A 315 (591)
T ss_dssp HHHHHHHHHHTT---------------TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHH---------------hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH-c
Confidence 111222223321 124789999999999999999999999999999999999999999999999 6
Q ss_pred CCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 580 NEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 580 ~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
+++.| |++|.++|.|||+++.++||++++|+++..|.|++||++|.|+...+.++
T Consensus 316 g~~~V-lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 316 NEIQV-VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp TSSSE-EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCeE-EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 77888 89999999999999999999999999999999999999999987655544
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=1.1e-25 Score=272.55 Aligned_cols=337 Identities=15% Similarity=0.195 Sum_probs=215.4
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHh-hC-------CcEEEEeCc-chHHHHHHHHHHHCC-
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFI-SA-------GSILVVCPA-ILRLSWAEELERWLP- 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~-~~-------gp~LIV~P~-sL~~qW~~Ei~k~~p- 267 (997)
..|+|||.+++..++.. +..+|+..+||+|||+.++..+.... .. ..+|||+|+ .|+.||.+++.++..
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 36999999999988853 55789999999999998776554433 22 269999999 899999999999753
Q ss_pred --CCCCceEEEEccCCCCcccc----cCCCeEEEEehhHHHHHHHhh---hhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 268 --FCLPADIHLVFGHRNNPVHL----TRFPRVVVISYTMLHRLRKSM---IEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 268 --~~~~~~i~~~~g~~~~~~~~----~~~~~VvItTy~~l~~~~~~l---~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
......+....+.......+ ....+|+|+|++.+....... .-..+++|||||||++.... ....+..
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g---f~~~~~~ 198 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG---FRDDLET 198 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT---THHHHHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCC---CHHHHHH
Confidence 12222344444443221111 125789999999997654432 23568999999999986432 2233444
Q ss_pred HHHHHhh-------cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHH
Q 001912 339 VLDVAAK-------VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411 (997)
Q Consensus 339 l~~l~~~-------~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (997)
+...... ..+++++|||+-.. ..+ ++. ..+..... ..... .
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~~---~~~----~~l~~~~~---------~~~~~--------~------- 246 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDDK-VQK---LAN----NIMNKKEC---------LFLDT--------V------- 246 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH-HHH---HTT----TTCCSSEE---------EEEES--------S-------
T ss_pred HHHHhhhhhcccccCceEEEEeccCChH-HHH---HHH----HHcCCCce---------EEEee--------c-------
Confidence 4444332 33689999997421 111 111 11110000 00000 0
Q ss_pred HHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccc
Q 001912 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491 (997)
Q Consensus 412 eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 491 (997)
............+.+...-..... ..
T Consensus 247 ----------------~~~~~~~~~~i~~~~~~~~~~~~~--~~------------------------------------ 272 (579)
T 3sqw_A 247 ----------------DKNEPEAHERIDQSVVISEKFANS--IF------------------------------------ 272 (579)
T ss_dssp ----------------CSSSCSSCTTEEEEEEEESSTTHH--HH------------------------------------
T ss_pred ----------------CccccccccccceEEEEecchhhh--HH------------------------------------
Confidence 000000111111111111000000 00
Q ss_pred cchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc---CCeEEEEeCCCCHHH
Q 001912 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRD 568 (997)
Q Consensus 492 l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~---gi~~~~idG~~s~~e 568 (997)
..+..+...+. ....+.++|||+.....++.+.+.|... |+.+..+||+++..+
T Consensus 273 --------~~~~~l~~~~~---------------~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 273 --------AAVEHIKKQIK---------------ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp --------HHHHHHHHHHH---------------HTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred --------HHHHHHHHHHh---------------hcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 00001111111 1134779999999999999999999987 999999999999999
Q ss_pred HHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 569 R~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
|..+++.|+ .++..| |++|.++++|||++++++||++|+|+++..+.|++||++|.|+...+. .|+... |...+
T Consensus 330 R~~~~~~F~-~g~~~v-LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i--~~~~~~--e~~~~ 403 (579)
T 3sqw_A 330 RTSLVKRFK-KDESGI-LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV--LFICKD--ELPFV 403 (579)
T ss_dssp HHHHHHHHH-HCSSEE-EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE--EEEEGG--GHHHH
T ss_pred HHHHHHHhh-cCCCeE-EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEE--EEEccc--HHHHH
Confidence 999999999 577887 899999999999999999999999999999999999999999754443 344443 44444
Q ss_pred HHHHH
Q 001912 649 QNLNK 653 (997)
Q Consensus 649 ~~l~~ 653 (997)
..+.+
T Consensus 404 ~~l~~ 408 (579)
T 3sqw_A 404 RELED 408 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=2.2e-25 Score=269.36 Aligned_cols=337 Identities=16% Similarity=0.207 Sum_probs=214.9
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHh-hC-------CcEEEEeCc-chHHHHHHHHHHHCC-
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFI-SA-------GSILVVCPA-ILRLSWAEELERWLP- 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~-~~-------gp~LIV~P~-sL~~qW~~Ei~k~~p- 267 (997)
..|+|||.+++..++.. +..+|+..+||+|||+.++..+.... .. ..+|||+|+ .|+.||.+++.++..
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 36999999999988853 55789999999999999776544332 22 269999999 899999999999743
Q ss_pred --CCCCceEEEEccCCCCcccc----cCCCeEEEEehhHHHHHHHhh---hhccccEEEeccccccccCCCCCcHHHHHH
Q 001912 268 --FCLPADIHLVFGHRNNPVHL----TRFPRVVVISYTMLHRLRKSM---IEQDWALLIVDESHHVRCSKRTSEPEEVKA 338 (997)
Q Consensus 268 --~~~~~~i~~~~g~~~~~~~~----~~~~~VvItTy~~l~~~~~~l---~~~~~~~VIvDEaH~iKN~~~~~~s~~~~a 338 (997)
......+....+.......+ ....+|+|+|++.+....... .-..+++||+||||++.... ....+..
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~---f~~~~~~ 249 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG---FRDDLET 249 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT---THHHHHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccc---hHHHHHH
Confidence 12222344444443221111 225789999999997654432 22568999999999986432 1233444
Q ss_pred HHHHHhh-------cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHH
Q 001912 339 VLDVAAK-------VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLE 411 (997)
Q Consensus 339 l~~l~~~-------~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (997)
+...... ..+++++|||+-.. .. .++. ..+.... ........
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~---~~~~----~~~~~~~------------------~~~~~~~~----- 298 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDDK-VQ---KLAN----NIMNKKE------------------CLFLDTVD----- 298 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH-HH---HHTT----TTCCSSE------------------EEEEESSC-----
T ss_pred HHHhhhhccccCccCceEEEEEccCCHH-HH---HHHH----HhcCCCc------------------eEEEeccC-----
Confidence 4444332 23589999997421 11 1111 1111000 00000000
Q ss_pred HHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccc
Q 001912 412 ELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGK 491 (997)
Q Consensus 412 eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 491 (997)
...........+.+...-.... . ...
T Consensus 299 -----------------~~~~~~~~~~~~~~~~~~~~~~-~-~~~----------------------------------- 324 (563)
T 3i5x_A 299 -----------------KNEPEAHERIDQSVVISEKFAN-S-IFA----------------------------------- 324 (563)
T ss_dssp -----------------SSSCSSCTTEEEEEEEESSTTH-H-HHH-----------------------------------
T ss_pred -----------------CCCccccccCceEEEECchhHh-h-HHH-----------------------------------
Confidence 0000011111111111100000 0 000
Q ss_pred cchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc---CCeEEEEeCCCCHHH
Q 001912 492 ISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK---GIGFVRIDGNTLPRD 568 (997)
Q Consensus 492 l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~---gi~~~~idG~~s~~e 568 (997)
.+..+...+. ....+.++|||++....++.+.+.|... ++.+..+||+++..+
T Consensus 325 ---------~~~~l~~~~~---------------~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 325 ---------AVEHIKKQIK---------------ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp ---------HHHHHHHHHH---------------HTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ---------HHHHHHHHHh---------------hcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 0000111111 1135779999999999999999999987 999999999999999
Q ss_pred HHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHH
Q 001912 569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHW 648 (997)
Q Consensus 569 R~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~ 648 (997)
|..+++.|+ +++..| |++|.+++.|||++++++||++|+|+++..+.|++||++|.|+... ++.++... |...+
T Consensus 381 R~~~~~~f~-~g~~~v-LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~~~~~--e~~~~ 454 (563)
T 3i5x_A 381 RTSLVKRFK-KDESGI-LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SVLFICKD--ELPFV 454 (563)
T ss_dssp HHHHHHHHH-HCSSEE-EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EEEEEEGG--GHHHH
T ss_pred HHHHHHHHh-cCCCCE-EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce--EEEEEchh--HHHHH
Confidence 999999999 577888 8999999999999999999999999999999999999999996543 34444443 44455
Q ss_pred HHHHH
Q 001912 649 QNLNK 653 (997)
Q Consensus 649 ~~l~~ 653 (997)
+.+.+
T Consensus 455 ~~l~~ 459 (563)
T 3i5x_A 455 RELED 459 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=7e-26 Score=291.35 Aligned_cols=337 Identities=16% Similarity=0.225 Sum_probs=224.3
Q ss_pred cChhhHHHHHHHHHh---cCC--CeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLR---RGG--RCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~---~~g--~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.++|||.+++..++. .+. ++|++.+||+|||++++..+.... ....+|||||+ .|..||.+++.++++... .
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i 681 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-V 681 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTT-C
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCC-C
Confidence 679999999998775 243 789999999999999986554433 44579999999 799999999999987542 3
Q ss_pred eEEEEccCCCCcc------cc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 273 DIHLVFGHRNNPV------HL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 273 ~i~~~~g~~~~~~------~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+..+.+...... .+ ....+|+|+|++.+... +.-.++++|||||+|++. ......+..+ ..
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g-------~~~~~~l~~l-~~ 750 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFG-------VRHKERIKAM-RA 750 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSC-------HHHHHHHHHH-HT
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcC-------hHHHHHHHHh-cC
Confidence 3444444322111 11 12478999999887542 233678999999999973 2333444444 34
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
..++++|||||+.+.+... +. +.. + .
T Consensus 751 ~~~vl~lSATp~p~~l~~~---~~----~~~-~-----------~----------------------------------- 776 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMA---MS----GMR-D-----------L----------------------------------- 776 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHH---HT----TTS-E-----------E-----------------------------------
T ss_pred CCCEEEEcCCCChhhHHHH---Hh----cCC-C-----------c-----------------------------------
Confidence 5679999999985431110 00 000 0 0
Q ss_pred HhhhhhccCCCceE---EEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRR---QIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKL 502 (997)
Q Consensus 426 ~k~~v~~~LP~k~~---~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~ 502 (997)
.+. ..|+..+ ............ ..
T Consensus 777 ---~~i-~~~~~~r~~i~~~~~~~~~~~i--~~----------------------------------------------- 803 (1151)
T 2eyq_A 777 ---SII-ATPPARRLAVKTFVREYDSMVV--RE----------------------------------------------- 803 (1151)
T ss_dssp ---EEC-CCCCCBCBCEEEEEEECCHHHH--HH-----------------------------------------------
T ss_pred ---eEE-ecCCCCccccEEEEecCCHHHH--HH-----------------------------------------------
Confidence 000 0111110 011111111000 00
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc--CCeEEEEeCCCCHHHHHHHHHHhccCC
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK--GIGFVRIDGNTLPRDRQSAVHSFQLSN 580 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~--gi~~~~idG~~s~~eR~~~i~~F~~~~ 580 (997)
.+ +. ....+.+++||++....++.+.+.|... ++++..+||+|+..+|++++++|+ ++
T Consensus 804 -~i---l~---------------~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~-~g 863 (1151)
T 2eyq_A 804 -AI---LR---------------EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH-HQ 863 (1151)
T ss_dssp -HH---HH---------------HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH-TT
T ss_pred -HH---HH---------------HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH-cC
Confidence 00 00 0124789999999999999999999987 889999999999999999999999 77
Q ss_pred CceEEEEeccccccccCcccccEEEEecC-CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHhHHHHH
Q 001912 581 EVKIAIIGITAGGVGLDFSSAQNVVFLEL-PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKSLRCVS 659 (997)
Q Consensus 581 ~~~VlLlSt~agg~GLNL~~A~~VI~~D~-~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K~~~i~ 659 (997)
+++| |++|.++++|||++++++||++++ .|++..+.|++||++|.|+.. ++|.++..+. .+-....+++..+.
T Consensus 864 ~~~V-LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~~---~l~~~~~~rl~~i~ 937 (1151)
T 2eyq_A 864 RFNV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHPK---AMTTDAQKRLEAIA 937 (1151)
T ss_dssp SCCE-EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCGG---GSCHHHHHHHHHHT
T ss_pred CCcE-EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCcc---ccCHHHHHHHHHHH
Confidence 8888 889999999999999999999998 699999999999999998654 4455554432 12223344455554
Q ss_pred hhhC---CChhhhhhhchhhhhccc
Q 001912 660 SATN---GKYDALQEIAVEGVSYLE 681 (997)
Q Consensus 660 ~~l~---g~~~~~~~~~~~~~~~l~ 681 (997)
...+ |..-+..+++..+.+.+.
T Consensus 938 ~~~~lg~gf~ia~~dl~irg~g~~l 962 (1151)
T 2eyq_A 938 SLEDLGAGFALATHDLEIRGAGELL 962 (1151)
T ss_dssp TCCSBSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCcchHHHHHhccCCCcccC
Confidence 4433 334455566666655543
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.1e-26 Score=272.84 Aligned_cols=313 Identities=14% Similarity=0.163 Sum_probs=189.4
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..|+|||.+++..++.. +.++|+..+||+|||++++..+...+. .+++|||+|+ .|+.||.+++.++......
T Consensus 140 ~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~- 218 (508)
T 3fho_A 140 XXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV- 218 (508)
T ss_dssp EECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC-
T ss_pred cCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe-
Confidence 46999999999988874 468999999999999997765554432 2369999999 7999999999999865432
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIV 350 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~l 350 (997)
.+....+.... .......+|+|+|++.+...... +....+++||+||||++.... ........+........+++
T Consensus 219 ~~~~~~~~~~~-~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~--~~~~~~~~i~~~~~~~~~~i 295 (508)
T 3fho_A 219 KTAFGIKDSVP-KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ--GLGDQSMRIKHLLPRNTQIV 295 (508)
T ss_dssp CEEC-----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC----CHHHHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCccc-ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC--CcHHHHHHHHHhCCcCCeEE
Confidence 22222222111 11223678999999998775432 223578999999999985311 23344555555554556789
Q ss_pred EEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 351 lLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
+|||||-. ...++. ....+.. .... ... .. .
T Consensus 296 ~lSAT~~~-~~~~~~---~~~~~~~---------------~~i~-~~~--------~~------------~--------- 326 (508)
T 3fho_A 296 LFSATFSE-RVEKYA---ERFAPNA---------------NEIR-LKT--------EE------------L--------- 326 (508)
T ss_dssp EEESCCST-HHHHHH---HHHSTTC---------------EEEC-CCC--------CC----------------------
T ss_pred EEeCCCCH-HHHHHH---HHhcCCC---------------eEEE-ecc--------cc------------C---------
Confidence 99999842 111111 1110000 0000 000 00 0
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
..+......+.+. . ...+...+.+++.
T Consensus 327 --~~~~~~~~~~~~~--~-------------------------------------------------~~~k~~~l~~ll~ 353 (508)
T 3fho_A 327 --SVEGIKQLYMDCQ--S-------------------------------------------------EEHKYNVLVELYG 353 (508)
T ss_dssp -----CCCCEEEEC-----------------------------------------------------CHHHHHHHHHHHC
T ss_pred --CcccceEEEEECC--c-------------------------------------------------hHHHHHHHHHHHH
Confidence 0000000011000 0 0011111222222
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGIT 590 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ 590 (997)
. ..+.++|||++.+..++.+.+.|...|+.+..+||+++..+|..+++.|+ +++.+| |++|.
T Consensus 354 ~----------------~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~-~g~~~V-LVaT~ 415 (508)
T 3fho_A 354 L----------------LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR-VGTSKV-LVTTN 415 (508)
T ss_dssp -------------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHH-SSSCCC-CEECC
T ss_pred h----------------cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH-CCCCeE-EEeCC
Confidence 1 24579999999999999999999999999999999999999999999998 677888 89999
Q ss_pred ccccccCcccccEEEEecCC------CCccHHhhHHHhhhhcCCCCeEEEE
Q 001912 591 AGGVGLDFSSAQNVVFLELP------QSPSLMLQAEDRAHRRGQTSAVNIY 635 (997)
Q Consensus 591 agg~GLNL~~A~~VI~~D~~------wnp~~~~Qa~gRa~RiGQ~k~V~Vy 635 (997)
++++|+|++++++||++|++ +++..+.|++||++|.|+...+.++
T Consensus 416 ~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 416 VIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred hhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99999999999999999999 7899999999999999976555544
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=270.89 Aligned_cols=313 Identities=13% Similarity=0.178 Sum_probs=112.0
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHhh-CC---cEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFIS-AG---SILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~~-~g---p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..++|+|.+++..++.. +..+|+..+||+|||++++..+..... .. .+|||+|+ .|..||.+.+.++..+....
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 192 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCc
Confidence 47999999999998874 467899999999999997655543332 22 69999999 89999988888876544334
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
.+.+..+............+|+|+|++.+...... +.-.++++||+||||++.... ........+........++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~i~~~~~~~~~~ 270 (479)
T 3fmp_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ--GHQDQSIRIQRMLPRNCQM 270 (479)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST--THHHHHHHHHTTSCTTSEE
T ss_pred eEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC--CcHHHHHHHHhhCCccceE
Confidence 45555554433222333568999999999776532 223579999999999985311 2223333444333344578
Q ss_pred EEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhh
Q 001912 350 VLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQH 429 (997)
Q Consensus 350 llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~ 429 (997)
+++||||-. +++.+.....|.. ..+ ..... .
T Consensus 271 i~~SAT~~~----~~~~~~~~~~~~~---------------~~i---------~~~~~---~------------------ 301 (479)
T 3fmp_B 271 LLFSATFED----SVWKFAQKVVPDP---------------NVI---------KLKRE---E------------------ 301 (479)
T ss_dssp EEEESCCCH----HHHHHHHHHSSSE---------------EEE---------EEC------------------------
T ss_pred EEEeCCCCH----HHHHHHHHHcCCC---------------eEE---------ecccc---c------------------
Confidence 999999842 2222221111100 000 00000 0
Q ss_pred hhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhh
Q 001912 430 LLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWL 509 (997)
Q Consensus 430 v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l 509 (997)
..++......+.+. ....+...+..++
T Consensus 302 --~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 302 --ETLDTIKQYYVLCS---------------------------------------------------SRDEKFQALCNLY 328 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cCcCCceEEEEEeC---------------------------------------------------CHHHHHHHHHHHH
Confidence 00000000000000 0000111111111
Q ss_pred ccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec
Q 001912 510 SIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589 (997)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt 589 (997)
. ...+.++||||+....++.+.+.|...|+.+..+||+++..+|..+++.|+ ++..+| |++|
T Consensus 329 ~----------------~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~-~g~~~i-Lv~T 390 (479)
T 3fmp_B 329 G----------------AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR-EGKEKV-LVTT 390 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h----------------hccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH-cCCCcE-EEEc
Confidence 1 123568999999999999999999999999999999999999999999999 677887 8999
Q ss_pred cccccccCcccccEEEEecCCCCc------cHHhhHHHhhhhcCCCCeEE
Q 001912 590 TAGGVGLDFSSAQNVVFLELPQSP------SLMLQAEDRAHRRGQTSAVN 633 (997)
Q Consensus 590 ~agg~GLNL~~A~~VI~~D~~wnp------~~~~Qa~gRa~RiGQ~k~V~ 633 (997)
.+++.|||++++++||+||+||++ ..+.|++||++|.|+...+.
T Consensus 391 ~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 391 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp --------------------------------------------------
T ss_pred cccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999876 68999999999998654443
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.4e-24 Score=268.73 Aligned_cols=360 Identities=17% Similarity=0.147 Sum_probs=222.7
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-hhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.|+|||.+++..+.. |.++|++.+||+|||+++...+... ...+++||++|+ .|..||.+++.++++ .+.++
T Consensus 86 ~L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgll 159 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLM 159 (1010)
T ss_dssp CCCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEE
T ss_pred CCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEEE
Confidence 699999999998765 6789999999999999986554443 345689999999 999999999999876 34455
Q ss_pred ccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
.|... .....+|+|+|++.+...... ..-.++++||+||+|++.+.. ....+..+........++++||||
T Consensus 160 tGd~~----~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~---rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 160 TGDIT----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE---RGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp CSSCE----ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT---THHHHHHHHHHSCTTCEEEEEECC
T ss_pred eCCCc----cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc---hhHHHHHHHHhcCCCCeEEEEcCC
Confidence 55332 223578999999998765432 223578999999999997532 234455555555456789999999
Q ss_pred CCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCC
Q 001912 356 PSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLP 435 (997)
Q Consensus 356 Pi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP 435 (997)
+- +..++...+..+..... .+... ..-|
T Consensus 233 i~--n~~e~a~~l~~~~~~~~---------------~vi~~-----------------------------------~~rp 260 (1010)
T 2xgj_A 233 IP--NAMEFAEWICKIHSQPC---------------HIVYT-----------------------------------NFRP 260 (1010)
T ss_dssp CT--THHHHHHHHHHHHTSCE---------------EEEEE-----------------------------------CCCS
T ss_pred CC--CHHHHHHHHHhhcCCCe---------------EEEec-----------------------------------CCCc
Confidence 53 33444333332110000 00000 0000
Q ss_pred CceEEEEE--------EecChh---HHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh--hhhh
Q 001912 436 PKRRQIIR--------LLLKRS---EIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG--IAKL 502 (997)
Q Consensus 436 ~k~~~~i~--------~~l~~~---q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~K~ 502 (997)
....+.+. ..+... ....+......+..... +..... ............ ....+ ...+
T Consensus 261 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~----~~~g~~~~~~k~-~~~~~~~~~~l 331 (1010)
T 2xgj_A 261 TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG----DDPNST----DSRGKKGQTYKG-GSAKGDAKGDI 331 (1010)
T ss_dssp SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---------------------------------------CHH
T ss_pred ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc----cccccc----cccccccccccc-ccccccchHHH
Confidence 00000000 000000 00001111100000000 000000 000000000000 00000 0111
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI--------------------------- 555 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi--------------------------- 555 (997)
..+...+. ...+.++|||+..+..++.+...|...++
T Consensus 332 ~~l~~~l~----------------~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 332 YKIVKMIW----------------KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp HHHHHHHH----------------HHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred HHHHHHHH----------------hcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 11222111 12356899999999999999888866443
Q ss_pred ------------eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE----ecC----CCCccH
Q 001912 556 ------------GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF----LEL----PQSPSL 615 (997)
Q Consensus 556 ------------~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~----~D~----~wnp~~ 615 (997)
.+..+||+++..+|..+++.|+ ++.++| |++|.+++.|||+++.++||. ||. ||++..
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~-~G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~ 473 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ-EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGE 473 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHH-TTCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHH
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHh-cCCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHH
Confidence 2678999999999999999999 688998 899999999999999999999 999 999999
Q ss_pred HhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHH
Q 001912 616 MLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNL 651 (997)
Q Consensus 616 ~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l 651 (997)
+.|++||++|.|+.....+|.++.++.-++.+...+
T Consensus 474 y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 474 YIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp HHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred HhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 999999999999988888998888765444444443
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=3.1e-25 Score=272.96 Aligned_cols=338 Identities=17% Similarity=0.193 Sum_probs=210.5
Q ss_pred cChhhHHHHHHHHHhc---C--CCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRR---G--GRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~---~--g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.|+|+|.+++..++.. + .++|+..+||+|||++++..+.... ....+||++|+ .|..||.+++.+|++... .
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i 446 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN-I 446 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS-C
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC-c
Confidence 7999999999987652 2 3689999999999999987665544 45679999999 899999999999986432 2
Q ss_pred eEEEEccCCCCcc------cc-cCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 273 DIHLVFGHRNNPV------HL-TRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 273 ~i~~~~g~~~~~~------~~-~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+....|...... .+ ....+|+|+|++.+.. .+.-.++++||+||+|++.... ...+... ..
T Consensus 447 ~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaHr~g~~q-------r~~l~~~-~~ 515 (780)
T 1gm5_A 447 HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQHRFGVKQ-------REALMNK-GK 515 (780)
T ss_dssp CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCCCC------------CCCCSS-SS
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccchhhHHH-------HHHHHHh-CC
Confidence 3555555433221 11 1247999999988754 2334688999999999973211 1111111 12
Q ss_pred cCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHH
Q 001912 346 VKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRR 425 (997)
Q Consensus 346 ~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR 425 (997)
..++++|||||+...+. +.. ++...
T Consensus 516 ~~~vL~mSATp~p~tl~----~~~------~g~~~--------------------------------------------- 540 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMA----LAF------YGDLD--------------------------------------------- 540 (780)
T ss_dssp CCCEEEEESSCCCHHHH----HHH------TCCSS---------------------------------------------
T ss_pred CCCEEEEeCCCCHHHHH----HHH------hCCcc---------------------------------------------
Confidence 46799999999753211 110 00000
Q ss_pred HhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhh
Q 001912 426 LKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGF 505 (997)
Q Consensus 426 ~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~ 505 (997)
-.+...+|+....+............ +
T Consensus 541 --~s~i~~~p~~r~~i~~~~~~~~~~~~---------------------------------------------------l 567 (780)
T 1gm5_A 541 --VTVIDEMPPGRKEVQTMLVPMDRVNE---------------------------------------------------V 567 (780)
T ss_dssp --CEEECCCCSSCCCCEECCCCSSTHHH---------------------------------------------------H
T ss_pred --eeeeeccCCCCcceEEEEeccchHHH---------------------------------------------------H
Confidence 00111223221111110010000000 0
Q ss_pred hhhhccCccccccCccccccccCCCCeEEEEeCCH--------HHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHH
Q 001912 506 REWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHL--------KVLDGVQEFISE---KGIGFVRIDGNTLPRDRQSAVH 574 (997)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~--------~~ld~L~~~L~~---~gi~~~~idG~~s~~eR~~~i~ 574 (997)
.+.+.. ....+.+++|||... ..++.+.+.|.. .++.+..+||+|+.++|..+++
T Consensus 568 ~~~i~~--------------~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~ 633 (780)
T 1gm5_A 568 YEFVRQ--------------EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVML 633 (780)
T ss_dssp HHHHHH--------------HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHH
T ss_pred HHHHHH--------------HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 001110 002345666666533 345667777776 4778899999999999999999
Q ss_pred HhccCCCceEEEEeccccccccCcccccEEEEecCC-CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHH
Q 001912 575 SFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELP-QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653 (997)
Q Consensus 575 ~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~-wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~ 653 (997)
.|+ +++++| |++|.++++|+|++++++||++|++ |+.+.+.|++||++|.|+...+.+ ++...+-+. .+
T Consensus 634 ~F~-~G~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il--l~~~~~~~~------~~ 703 (780)
T 1gm5_A 634 EFA-EGRYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL--VVGDVGEEA------ME 703 (780)
T ss_dssp HHT-TTSSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC--CCCSCCHHH------HH
T ss_pred HHH-CCCCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE--EECCCChHH------HH
Confidence 999 778888 8999999999999999999999998 478999999999999997654433 333333222 23
Q ss_pred hHHHHHhhhCCChhhhhhhchhhhhccc
Q 001912 654 SLRCVSSATNGKYDALQEIAVEGVSYLE 681 (997)
Q Consensus 654 K~~~i~~~l~g~~~~~~~~~~~~~~~l~ 681 (997)
++..+....+|..-...++...+..++.
T Consensus 704 rl~~l~~~~dgf~iae~dL~~Rg~gd~l 731 (780)
T 1gm5_A 704 RLRFFTLNTDGFKIAEYDLKTRGPGEFF 731 (780)
T ss_dssp HHHHHHTCCCSHHHHHHHHHSSCCCC--
T ss_pred HHHHHHhhhccchhhHhhHhccCcchhh
Confidence 3444555556655555555555554443
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.92 E-value=1.2e-23 Score=260.57 Aligned_cols=324 Identities=18% Similarity=0.165 Sum_probs=214.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
..|+|||.+++..+.. +.++|++.+||+|||+++...+ ..+...+++|+|+|. .|..||.+++.+|.+. ...+..
T Consensus 24 ~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~--g~~v~~ 100 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI--GLRIGI 100 (702)
T ss_dssp -CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT--TCCEEE
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc--CCEEEE
Confidence 3789999999998554 7889999999999999996544 444457789999999 6999999999766543 224555
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhh--hccccEEEeccccccccCCCCCcHHHHHHHHHHH---hhcCcEEE
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI--EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA---AKVKRIVL 351 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~--~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~---~~~~~~ll 351 (997)
..|............+|+|+|++.+......-. -.++++||+||+|.+.+.. ....+..+.... ....++++
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~---r~~~~~~ll~~l~~~~~~~~ii~ 177 (702)
T 2p6r_A 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK---RGATLEILVTKMRRMNKALRVIG 177 (702)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT---THHHHHHHHHHHHHHCTTCEEEE
T ss_pred EeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC---cccHHHHHHHHHHhcCcCceEEE
Confidence 555443333333478999999999977544311 2478999999999986422 123333333332 23567899
Q ss_pred EeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhh
Q 001912 352 LSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLL 431 (997)
Q Consensus 352 LTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~ 431 (997)
||||+- +..++.. ++....+...
T Consensus 178 lSATl~--n~~~~~~---~l~~~~~~~~---------------------------------------------------- 200 (702)
T 2p6r_A 178 LSATAP--NVTEIAE---WLDADYYVSD---------------------------------------------------- 200 (702)
T ss_dssp EECCCT--THHHHHH---HTTCEEEECC----------------------------------------------------
T ss_pred ECCCcC--CHHHHHH---HhCCCcccCC----------------------------------------------------
Confidence 999974 2444332 2221111000
Q ss_pred ccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhcc
Q 001912 432 VQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSI 511 (997)
Q Consensus 432 ~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~ 511 (997)
.-|-.....+... .. . ... .... .....+ .+...+.+.+
T Consensus 201 -~r~~~l~~~~~~~--~~-----------~----~~~------------~~~~--~~~~~~-------~~~~~~~~~~-- 239 (702)
T 2p6r_A 201 -WRPVPLVEGVLCE--GT-----------L----ELF------------DGAF--STSRRV-------KFEELVEECV-- 239 (702)
T ss_dssp -CCSSCEEEEEECS--SE-----------E----EEE------------ETTE--EEEEEC-------CHHHHHHHHH--
T ss_pred -CCCccceEEEeeC--Ce-----------e----ecc------------Ccch--hhhhhh-------hHHHHHHHHH--
Confidence 0000000000000 00 0 000 0000 000000 0011111111
Q ss_pred CccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------------------------CCeEEEEe
Q 001912 512 HPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------------------------GIGFVRID 561 (997)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------------------------gi~~~~id 561 (997)
..+.++|||++.+...+.+...|... +..+..+|
T Consensus 240 ----------------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 240 ----------------AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp ----------------HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred ----------------hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 24678999999999988888877643 13466799
Q ss_pred CCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE----ec---CCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 562 GNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF----LE---LPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 562 G~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~----~D---~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
|+++.++|..+.+.|+ ++.++| |++|.++++|||+++.++||. || .|+++..+.|+.||++|.|+.+.-.+
T Consensus 304 ~~l~~~~R~~v~~~f~-~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 381 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFR-RGNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEA 381 (702)
T ss_dssp TTSCHHHHHHHHHHHH-TTSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred CCCCHHHHHHHHHHHH-CCCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 9999999999999999 778888 899999999999999999998 66 78999999999999999999888899
Q ss_pred EEEeeCCChH
Q 001912 635 YIFCAKDTTD 644 (997)
Q Consensus 635 y~Li~~gTiE 644 (997)
|.++.+...+
T Consensus 382 ~~l~~~~~~~ 391 (702)
T 2p6r_A 382 IIIVGKRDRE 391 (702)
T ss_dssp EEECCGGGHH
T ss_pred EEEecCccHH
Confidence 9998887644
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.91 E-value=2e-23 Score=259.13 Aligned_cols=324 Identities=17% Similarity=0.147 Sum_probs=217.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHH-HHHHHHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAI-AIAACFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqai-al~~~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|+|||.+++..++..+.++|++.+||+|||+++. +++..+. ..+++|||+|. +|..||.+++.+|.+. ...+.
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~--g~~v~ 99 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI--GLRVA 99 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG--TCCEE
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc--CCEEE
Confidence 378999999999856668899999999999999984 4444444 46789999999 9999999999776543 22355
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHhhh--hccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI--EQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~--~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
...|............+|+|+|++.+......-. -.++++||+||+|.+.... ....+..+........++++||
T Consensus 100 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~---r~~~~~~ll~~l~~~~~ii~lS 176 (720)
T 2zj8_A 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD---RGATLEVILAHMLGKAQIIGLS 176 (720)
T ss_dssp EECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT---THHHHHHHHHHHBTTBEEEEEE
T ss_pred EecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc---ccHHHHHHHHHhhcCCeEEEEc
Confidence 5555433322233467999999999976544311 2478999999999996422 2333444444443356789999
Q ss_pred ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433 (997)
Q Consensus 354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~ 433 (997)
||+-. +.++.. ++....+.. ..
T Consensus 177 ATl~n--~~~~~~---~l~~~~~~~-----------------------------------------------------~~ 198 (720)
T 2zj8_A 177 ATIGN--PEELAE---WLNAELIVS-----------------------------------------------------DW 198 (720)
T ss_dssp CCCSC--HHHHHH---HTTEEEEEC-----------------------------------------------------CC
T ss_pred CCcCC--HHHHHH---HhCCcccCC-----------------------------------------------------CC
Confidence 99742 333322 221111100 00
Q ss_pred CCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCc
Q 001912 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 434 LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~ 513 (997)
-|......+... .. ....+. . . . ....+...+.+.+
T Consensus 199 rp~~l~~~~~~~--~~-----------------~~~~~~-----~--~---------~-----~~~~~~~~~~~~~---- 234 (720)
T 2zj8_A 199 RPVKLRRGVFYQ--GF-----------------VTWEDG-----S--I---------D-----RFSSWEELVYDAI---- 234 (720)
T ss_dssp CSSEEEEEEEET--TE-----------------EEETTS-----C--E---------E-----ECSSTTHHHHHHH----
T ss_pred CCCcceEEEEeC--Ce-----------------eecccc-----c--h---------h-----hhhHHHHHHHHHH----
Confidence 010001111000 00 000000 0 0 0 0000011111111
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHc------------------C---------------CeEEEE
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEK------------------G---------------IGFVRI 560 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~------------------g---------------i~~~~i 560 (997)
..+.++|||++.+...+.+...|... + ..+..+
T Consensus 235 --------------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 235 --------------RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp --------------HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred --------------hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 24679999999999998888888653 1 248889
Q ss_pred eCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE----ec----CCCCccHHhhHHHhhhhcCCCCeE
Q 001912 561 DGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF----LE----LPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 561 dG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~----~D----~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
||+++.++|..+.+.|+ ++.++| |++|.++++|||+++.++||. || .|+++..+.|+.||++|.|+.+.-
T Consensus 301 h~~l~~~~R~~v~~~f~-~g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFR-KGIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp CTTSCHHHHHHHHHHHH-TTSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred cCCCCHHHHHHHHHHHH-CCCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 99999999999999999 778888 889999999999999999988 77 689999999999999999998888
Q ss_pred EEEEEeeCCChHH
Q 001912 633 NIYIFCAKDTTDE 645 (997)
Q Consensus 633 ~Vy~Li~~gTiEe 645 (997)
.+|.++.....+.
T Consensus 379 ~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 379 EGIIVSTSDDPRE 391 (720)
T ss_dssp EEEEECSSSCHHH
T ss_pred eEEEEecCccHHH
Confidence 8999998887544
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.4e-23 Score=263.83 Aligned_cols=377 Identities=16% Similarity=0.124 Sum_probs=220.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH-hhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF-ISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~-~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
-.|+|||.+++..+.. |..+|++.+||+|||++++..+... ...+++||++|+ .|..||.+++.+++. .+.+
T Consensus 183 f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~Vgl 256 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGL 256 (1108)
T ss_dssp SCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SEEE
T ss_pred CCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----CccE
Confidence 3799999999988654 7789999999999999987655544 445679999999 899999999999986 3455
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEec
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSG 354 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTG 354 (997)
+.|... .....+|+|+|++.|...... ..-.++++|||||||++.... ....+..+........++++|||
T Consensus 257 ltGd~~----~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~---rg~~~e~ii~~l~~~~qvl~lSA 329 (1108)
T 3l9o_A 257 MTGDIT----INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE---RGVVWEETIILLPDKVRYVFLSA 329 (1108)
T ss_dssp ECSSCB----CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH---HHHHHHHHHHHSCTTSEEEEEEC
T ss_pred EeCccc----cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc---hHHHHHHHHHhcCCCceEEEEcC
Confidence 555433 234578999999998775432 112478999999999995311 12234444444445567899999
Q ss_pred cCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccC
Q 001912 355 TPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQL 434 (997)
Q Consensus 355 TPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~L 434 (997)
| +.|. .++...+..+......-....+ .+.....+ . .. -
T Consensus 330 T-ipn~-~e~a~~l~~~~~~~~~vi~~~~-----rp~pl~~~---~------------------------------~~-~ 368 (1108)
T 3l9o_A 330 T-IPNA-MEFAEWICKIHSQPCHIVYTNF-----RPTPLQHY---L------------------------------FP-A 368 (1108)
T ss_dssp S-CSSC-HHHHHHHHHHTCSCEEEEEECC-----CSSCEEEE---E------------------------------EE-T
T ss_pred C-CCCH-HHHHHHHHhhcCCCeEEEecCC-----CcccceEE---E------------------------------ee-c
Confidence 9 3333 4444444332211000000000 00000000 0 00 0
Q ss_pred CCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCcc
Q 001912 435 PPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPV 514 (997)
Q Consensus 435 P~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~ 514 (997)
.......+.-.........+......+.................. .... ... .......++..+...+.
T Consensus 369 ~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-----~~~-~~~~~~~~l~~li~~l~---- 437 (1108)
T 3l9o_A 369 HGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG-QTYK-----GGS-AKGDAKGDIYKIVKMIW---- 437 (1108)
T ss_dssp TSSCCEEEEETTTEECHHHHHHHHTTC------------------------------------CHHHHHHHHHHHH----
T ss_pred CCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccc-cccc-----ccc-ccccchhHHHHHHHHHH----
Confidence 000000000000000000011000000000000000000000000 0000 000 00000111111111111
Q ss_pred ccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCe--------------------------------------
Q 001912 515 IAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIG-------------------------------------- 556 (997)
Q Consensus 515 ~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~-------------------------------------- 556 (997)
...+.++|||+..+..++.+...|...++.
T Consensus 438 ------------~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 438 ------------KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp ------------HTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred ------------hcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 134678999999999999998887543322
Q ss_pred -EEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCCCcc--------HHhhHHHhhhhcC
Q 001912 557 -FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPS--------LMLQAEDRAHRRG 627 (997)
Q Consensus 557 -~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~--------~~~Qa~gRa~RiG 627 (997)
+..+||+++..+|..+++.|+ .+.++| |++|.++++|||+++.++||.++.+|++. .|.|+.||++|.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~-~G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQ-EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHH-HTCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeeeecCCCCHHHHHHHHHHHh-CCCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 688999999999999999999 778888 89999999999999999999888877655 4999999999999
Q ss_pred CCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 628 QTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 628 Q~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
+.....+|.++..+..+..+...+..+
T Consensus 584 ~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp SCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 988889999988876555555554443
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.6e-22 Score=251.13 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=211.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHh-hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFI-SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~-~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|+|+|.+++..++..+.++|++.+||+|||+++...+. .+. ..+++++++|. .|..||.+++.++.+. ...+.
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~--g~~v~ 106 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI--GFKVA 106 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG--TCCEE
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC--CCEEE
Confidence 3789999999998666688999999999999999965544 333 46789999999 6999999999665432 22344
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHhh--hhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSM--IEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l--~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
...|............+|+|+|++.+......- .-.++++||+||+|.+.+.. .......+..... ..++++||
T Consensus 107 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~---~~~~l~~i~~~~~-~~~ii~lS 182 (715)
T 2va8_A 107 MTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE---RGPVVESVTIRAK-RRNLLALS 182 (715)
T ss_dssp ECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT---THHHHHHHHHHHH-TSEEEEEE
T ss_pred EEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc---cchHHHHHHHhcc-cCcEEEEc
Confidence 445543333322336799999999987754431 12478999999999985321 2233444443332 57789999
Q ss_pred ccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhcc
Q 001912 354 GTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQ 433 (997)
Q Consensus 354 GTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~ 433 (997)
||+-. ..++...+ ....+....
T Consensus 183 ATl~n--~~~~~~~l---~~~~~~~~~----------------------------------------------------- 204 (715)
T 2va8_A 183 ATISN--YKQIAKWL---GAEPVATNW----------------------------------------------------- 204 (715)
T ss_dssp SCCTT--HHHHHHHH---TCEEEECCC-----------------------------------------------------
T ss_pred CCCCC--HHHHHHHh---CCCccCCCC-----------------------------------------------------
Confidence 99842 34433322 111110000
Q ss_pred CCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCc
Q 001912 434 LPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHP 513 (997)
Q Consensus 434 LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~ 513 (997)
-|-.....+...-... ........+ ... ..+.. ...+...+.+.+
T Consensus 205 r~~~l~~~~~~~~~~~-------------~~~~~~~~~-----~~~----------~~~~~---~~~~~~~~~~~~---- 249 (715)
T 2va8_A 205 RPVPLIEGVIYPERKK-------------KEYNVIFKD-----NTT----------KKVHG---DDAIIAYTLDSL---- 249 (715)
T ss_dssp CSSCEEEEEEEECSST-------------TEEEEEETT-----SCE----------EEEES---SSHHHHHHHHHH----
T ss_pred CCCCceEEEEecCCcc-------------cceeeecCc-----chh----------hhccc---chHHHHHHHHHH----
Confidence 0000000000000000 000000000 000 00000 000111111111
Q ss_pred cccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcC------------------------------------CeE
Q 001912 514 VIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKG------------------------------------IGF 557 (997)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~g------------------------------------i~~ 557 (997)
..+.++|||++.+...+.+...|.... ..+
T Consensus 250 --------------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 250 --------------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp --------------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred --------------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 246899999999999999988887642 247
Q ss_pred EEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE----ec-------CCCCccHHhhHHHhhhhc
Q 001912 558 VRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF----LE-------LPQSPSLMLQAEDRAHRR 626 (997)
Q Consensus 558 ~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~----~D-------~~wnp~~~~Qa~gRa~Ri 626 (997)
..+||+++.++|..+.+.|. ++..+| |++|.++++|||+++.++||. || .|+++..+.|+.||++|.
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~-~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFR-QRKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHH-TTCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred EEECCCCCHHHHHHHHHHHH-cCCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 88999999999999999999 778888 899999999999999999998 99 899999999999999999
Q ss_pred CCCCeEEEEEEeeCCC
Q 001912 627 GQTSAVNIYIFCAKDT 642 (997)
Q Consensus 627 GQ~k~V~Vy~Li~~gT 642 (997)
|+.+.-.+|.++....
T Consensus 394 g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 394 GFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEEEECSCGG
T ss_pred CCCCCceEEEEeCCch
Confidence 9988888888887654
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=5.5e-22 Score=251.65 Aligned_cols=404 Identities=15% Similarity=0.172 Sum_probs=221.7
Q ss_pred hhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 197 l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
+.-.|+|||.+++..++. |..+|+..+||+|||+.++..+..... .+.+||++|+ +|..||.+++.++++.. .+
T Consensus 36 ~~f~l~~~Q~~aI~~il~-g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~---~v 111 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDV---NI 111 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT-TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--C---CE
T ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCC---eE
Confidence 334789999999987765 678999999999999987655554444 4569999998 89999999999987632 34
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEE
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLL 352 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llL 352 (997)
..+.|... .....+|+|+|++.+...... ....++++|||||||++.+..... .+..+........++++|
T Consensus 112 ~~l~G~~~----~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~---~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 112 GLITGDVQ----INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGV---VWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEECSSCE----ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTC---CHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCc----cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHH---HHHHHHHhcccCCCEEEE
Confidence 45555332 223578999999999765432 123578999999999987654332 244555554455678999
Q ss_pred eccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccc-cchhh--hhhhhccHHHHHHHHHhHHHHHHHhhh
Q 001912 353 SGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQ-GQLFQ--DFSKGVRLEELNVLLKQTVMIRRLKQH 429 (997)
Q Consensus 353 TGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~eL~~~l~~~~~lRR~k~~ 429 (997)
||||- +..++...+.........-....+. . .+....... ..... +.........+. ... +
T Consensus 185 SAT~~--n~~ef~~~l~~~~~~~~~vi~~~~r-~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~-~ 248 (997)
T 4a4z_A 185 SATVP--NTYEFANWIGRTKQKNIYVISTPKR-P--VPLEINIWAKKELIPVINQNSEFLEANFR----------KHK-E 248 (997)
T ss_dssp ECCCT--THHHHHHHHHHHHTCCEEEEECSSC-S--SCEEEEEEETTEEEEEECTTCCBCHHHHH----------HHH-H
T ss_pred cCCCC--ChHHHHHHHhcccCCceEEEecCCC-C--ccceEEEecCCcchhcccchhhhhHHHHH----------HHH-H
Confidence 99974 2334444443221000000000000 0 000000000 00000 000000000000 000 0
Q ss_pred hhccCCCceEEEEEEecChhHHHHH--HHHHHHHhhhccccCCCCCCCCCCccccchhhhcc----cccch-hhhhhhhh
Q 001912 430 LLVQLPPKRRQIIRLLLKRSEIVSA--KAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRL----GKISY-QELGIAKL 502 (997)
Q Consensus 430 v~~~LP~k~~~~i~~~l~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~l~~-~~~~~~K~ 502 (997)
+........... .+.. +.... ................................... ..+.. ......+.
T Consensus 249 ~l~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (997)
T 4a4z_A 249 ILNGESAKGAPS---KTDN-GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTW 324 (997)
T ss_dssp HHC---------------------------------------------------------------------CCCCTTHH
T ss_pred Hhhccccccccc---cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHH
Confidence 000000000000 0000 00000 00000000000000000000000000000000000 00000 00001112
Q ss_pred hhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------------
Q 001912 503 SGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGI--------------------------- 555 (997)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi--------------------------- 555 (997)
..+.+++. .....++|||+..+..++.+...|...|+
T Consensus 325 ~~li~~l~----------------~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 388 (997)
T 4a4z_A 325 PEIVNYLR----------------KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDL 388 (997)
T ss_dssp HHHHHHHH----------------HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTC
T ss_pred HHHHHHHH----------------hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 22222222 13457899999999999999998876555
Q ss_pred ------------eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecCCC---------Ccc
Q 001912 556 ------------GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQ---------SPS 614 (997)
Q Consensus 556 ------------~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~w---------np~ 614 (997)
.+..+||+++..+|+.+++.|+ .+.++| |++|.+++.|||+++ .+||+++.++ ++.
T Consensus 389 ~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~-~G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~ 465 (997)
T 4a4z_A 389 PQILKTRSLLERGIAVHHGGLLPIVKELIEILFS-KGFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPG 465 (997)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH-TTCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHH
T ss_pred hhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHH-CCCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHH
Confidence 4788999999999999999999 778888 999999999999999 7777766655 999
Q ss_pred HHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHH
Q 001912 615 LMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 615 ~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
.+.|+.||++|.|+.....++.+...+..++.++..
T Consensus 466 ~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 466 EFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp HHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred HHhHHhcccccCCCCcceEEEEecCCCcchHHHHHH
Confidence 999999999999998888888888766666665543
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.86 E-value=7.9e-21 Score=242.99 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=214.3
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.+.|+|.+++..++. |..+|+..++|+|||+.++..+..... ...+|||+|+ .|+.|+.+.+.++. . ....+..+
T Consensus 78 ~pt~iQ~~ai~~il~-g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~-~~i~v~~l 154 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-D-EKVKIFGF 154 (1104)
T ss_dssp CCCHHHHHHHHHHTT-TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-C-TTSCEEEE
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-C-CCCeEEEE
Confidence 688999999998876 668999999999999977665554444 4569999999 89999999999976 2 23345555
Q ss_pred ccCCCCc------ccccC-CCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCC---------CCCcHHHHHHHHH
Q 001912 278 FGHRNNP------VHLTR-FPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSK---------RTSEPEEVKAVLD 341 (997)
Q Consensus 278 ~g~~~~~------~~~~~-~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~---------~~~~s~~~~al~~ 341 (997)
.|..... ..+.. ..+|+|+|++.+......+...++++||+||||++.... .+........+..
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 5544331 11222 379999999999877666666789999999999874211 0111111344444
Q ss_pred HHh-----------hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccH
Q 001912 342 VAA-----------KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRL 410 (997)
Q Consensus 342 l~~-----------~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (997)
... ...+++++||||......+.+ ...+.... +.
T Consensus 235 ~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~------------------~~~~l~i~-v~---------------- 279 (1104)
T 4ddu_A 235 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL------------------FRDLLNFT-VG---------------- 279 (1104)
T ss_dssp HHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH------------------HHHHTCCC-CC----------------
T ss_pred hcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH------------------hhcceeEE-ec----------------
Confidence 433 456789999998655433211 00000000 00
Q ss_pred HHHHHHHHhHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhccc
Q 001912 411 EELNVLLKQTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLG 490 (997)
Q Consensus 411 ~eL~~~l~~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (997)
. ....+....+.+ +..
T Consensus 280 ------------------~-~~~~~~~i~~~~-~~~-------------------------------------------- 295 (1104)
T 4ddu_A 280 ------------------R-LVSVARNITHVR-ISS-------------------------------------------- 295 (1104)
T ss_dssp ------------------B-CCCCCCCEEEEE-ESC--------------------------------------------
T ss_pred ------------------c-CCCCcCCceeEE-Eec--------------------------------------------
Confidence 0 000011111111 100
Q ss_pred ccchhhhhhhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEE-EEeCCCCHHHH
Q 001912 491 KISYQELGIAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFV-RIDGNTLPRDR 569 (997)
Q Consensus 491 ~l~~~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~-~idG~~s~~eR 569 (997)
.|...+.+++.. .+.++|||++.+..++.|...|...|+.+. .+|| +|
T Consensus 296 ---------~k~~~L~~ll~~-----------------~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~r 344 (1104)
T 4ddu_A 296 ---------RSKEKLVELLEI-----------------FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FE 344 (1104)
T ss_dssp ---------CCHHHHHHHHHH-----------------HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HH
T ss_pred ---------CHHHHHHHHHHh-----------------cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cH
Confidence 011112222221 146899999999999999999999999998 8999 25
Q ss_pred HHHHHHhccCCCceEEEEe---ccccccccCccc-ccEEEEecCCC----------------------------------
Q 001912 570 QSAVHSFQLSNEVKIAIIG---ITAGGVGLDFSS-AQNVVFLELPQ---------------------------------- 611 (997)
Q Consensus 570 ~~~i~~F~~~~~~~VlLlS---t~agg~GLNL~~-A~~VI~~D~~w---------------------------------- 611 (997)
.+ ++.|+ +++.+|++.+ |.+++.|||+++ .++||+||+|-
T Consensus 345 r~-l~~F~-~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 422 (1104)
T 4ddu_A 345 KN-FEDFK-VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVE 422 (1104)
T ss_dssp HH-HHHHH-HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHH
T ss_pred HH-HHHHH-CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 99999 6788994443 999999999999 99999999998
Q ss_pred --------------------------------------CccHHhhHHHhhhhcCCC---CeEEEEEEeeCCChHHHHHHH
Q 001912 612 --------------------------------------SPSLMLQAEDRAHRRGQT---SAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 612 --------------------------------------np~~~~Qa~gRa~RiGQ~---k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
++..|.||.||++|.|.. +.+-|. ++ -|+.++..
T Consensus 423 ~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~-~~----~d~~~~~~ 497 (1104)
T 4ddu_A 423 ELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVI-FE----EDEEIFES 497 (1104)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEE-EC----CCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEE-EE----ecHHHHHH
Confidence 677899999999998753 444332 22 36778888
Q ss_pred HHHhHHHH
Q 001912 651 LNKSLRCV 658 (997)
Q Consensus 651 l~~K~~~i 658 (997)
+.+++...
T Consensus 498 l~~~~~~~ 505 (1104)
T 4ddu_A 498 LKTRLLLI 505 (1104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 88877654
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.5e-20 Score=237.06 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=104.8
Q ss_pred ccChhhHHHHHHHHHhc-------------CCCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRR-------------GGRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEE 261 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-------------~g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~E 261 (997)
..|||||.+||..++.. +.++|+.+.||+|||++++.++..+.. ..++|||||. .|..||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 46999999999997651 246899999999999999877754432 2479999997 899999999
Q ss_pred HHHHCCCCCCceEEEEccCCC-C-cccc-cCCCeEEEEehhHHHHHHHhh----hhccccEEEeccccccccCCCCCcHH
Q 001912 262 LERWLPFCLPADIHLVFGHRN-N-PVHL-TRFPRVVVISYTMLHRLRKSM----IEQDWALLIVDESHHVRCSKRTSEPE 334 (997)
Q Consensus 262 i~k~~p~~~~~~i~~~~g~~~-~-~~~~-~~~~~VvItTy~~l~~~~~~l----~~~~~~~VIvDEaH~iKN~~~~~~s~ 334 (997)
+.+|.+... ..+... . ...+ ....+|+|+|++.+....... .-..+.+||+||||+... ..
T Consensus 350 f~~f~~~~v------~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~------~~ 417 (1038)
T 2w00_A 350 YQRFSPDSV------NGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF------GE 417 (1038)
T ss_dssp HHTTSTTCS------SSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH------HH
T ss_pred HHHhccccc------ccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc------hH
Confidence 999876421 111110 0 1112 235789999999998754421 123789999999999741 23
Q ss_pred HHHHHHHHHhhcCcEEEEeccCCCC
Q 001912 335 EVKAVLDVAAKVKRIVLLSGTPSLS 359 (997)
Q Consensus 335 ~~~al~~l~~~~~~~llLTGTPi~n 359 (997)
.++.+.... ...++++|||||...
T Consensus 418 ~~~~I~~~~-p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 418 AQKNLKKKF-KRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHC-SSEEEEEEESSCCCS
T ss_pred HHHHHHHhC-CcccEEEEeCCcccc
Confidence 355555544 235789999999864
No 44
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.84 E-value=6e-21 Score=207.65 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=93.9
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccC-----cccc
Q 001912 527 NPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD-----FSSA 601 (997)
Q Consensus 527 ~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLN-----L~~A 601 (997)
.+.++|||||||++.++|+|+++|..+|++|.|+||++...+ ++. .+.++.++|+ +++||.|+| +++|
T Consensus 122 ~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~-----~~~~~~i~Ll-tsag~~gin~~~~nl~~a 194 (328)
T 3hgt_A 122 QEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA-----NDFSCTVHLF-SSEGINFTKYPIKSKARF 194 (328)
T ss_dssp TTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCC
T ss_pred HhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc-----ccCCceEEEE-ECCCCCCcCcccccCCCC
Confidence 467999999999999999999999999999999999965432 221 1345778766 568888886 8999
Q ss_pred cEEEEecCCCCccHH-hhHHHhhhhc--CCCCeEEEEEEeeCCChHHHHHHH
Q 001912 602 QNVVFLELPQSPSLM-LQAEDRAHRR--GQTSAVNIYIFCAKDTTDESHWQN 650 (997)
Q Consensus 602 ~~VI~~D~~wnp~~~-~Qa~gRa~Ri--GQ~k~V~Vy~Li~~gTiEe~i~~~ 650 (997)
|+||+||++|||... .||+.|+||+ ||+++|.||||++.+|||+.++..
T Consensus 195 D~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 195 DMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 999999999999998 9999999999 689999999999999999998875
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=1.5e-19 Score=231.45 Aligned_cols=312 Identities=15% Similarity=0.158 Sum_probs=201.5
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHHCCCCCCc---eEE
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERWLPFCLPA---DIH 275 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~---~i~ 275 (997)
+ |+|.+++..++. |.++|+..++|+|||+.++.++..... ...+|||+|+ .|..|+.+++.+++...... .+.
T Consensus 58 p-~iQ~~ai~~il~-g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~ 135 (1054)
T 1gku_B 58 R-AIQKMWAKRILR-KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIG 135 (1054)
T ss_dssp C-HHHHHHHHHHHT-TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEE
T ss_pred H-HHHHHHHHHHHh-CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEE
Confidence 7 999999988885 678999999999999855555554443 4569999999 89999999999998754321 455
Q ss_pred EEccCCCCcc------cccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh-----
Q 001912 276 LVFGHRNNPV------HLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA----- 344 (997)
Q Consensus 276 ~~~g~~~~~~------~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~----- 344 (997)
.+.|...... .+.. .+|+|+|++.+......+ .++++||+||||++-+. ......+.....
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L--~~l~~lViDEah~~l~~-----~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKA-----SKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTS-----THHHHHHHHHTTEEEET
T ss_pred EEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHh--ccCCEEEEeChhhhhhc-----cccHHHHHHHhCcchhh
Confidence 5555443321 2233 899999999998765543 37899999999998641 223444444331
Q ss_pred ------hcCcEEEEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHH
Q 001912 345 ------KVKRIVLLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLK 418 (997)
Q Consensus 345 ------~~~~~llLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~ 418 (997)
.....+++|+|+... .++.. .+...+.....
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~--~~~~~---------------~~~~~~~~i~v-------------------------- 244 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAK--KGKKA---------------ELFRQLLNFDI-------------------------- 244 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSC--CCTTH---------------HHHHHHHCCCC--------------------------
T ss_pred hhhhcccCCceEEEEecCCCc--hhHHH---------------HHhhcceEEEc--------------------------
Confidence 224568889887533 11100 01000000000
Q ss_pred hHHHHHHHhhhhhccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhh
Q 001912 419 QTVMIRRLKQHLLVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELG 498 (997)
Q Consensus 419 ~~~~lRR~k~~v~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (997)
.-....++...+. .+.
T Consensus 245 ----------~~~~~~~~~i~~~-~~~----------------------------------------------------- 260 (1054)
T 1gku_B 245 ----------GSSRITVRNVEDV-AVN----------------------------------------------------- 260 (1054)
T ss_dssp ----------SCCEECCCCEEEE-EES-----------------------------------------------------
T ss_pred ----------cCcccCcCCceEE-Eec-----------------------------------------------------
Confidence 0000000000110 000
Q ss_pred hhhhhhhhhhhccCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc
Q 001912 499 IAKLSGFREWLSIHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL 578 (997)
Q Consensus 499 ~~K~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~ 578 (997)
..|...+.+++. ..+.++|||++....++.+.+.|... +.+..+||++ ..+++.|+
T Consensus 261 ~~k~~~L~~ll~-----------------~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~- 316 (1054)
T 1gku_B 261 DESISTLSSILE-----------------KLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFV- 316 (1054)
T ss_dssp CCCTTTTHHHHT-----------------TSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHH-
T ss_pred hhHHHHHHHHHh-----------------hcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHH-
Confidence 011111222222 12568999999999999999999988 9999999998 37789999
Q ss_pred CCCceEEEEe---ccccccccCcccc-cEEEEecCC--------------------------------------------
Q 001912 579 SNEVKIAIIG---ITAGGVGLDFSSA-QNVVFLELP-------------------------------------------- 610 (997)
Q Consensus 579 ~~~~~VlLlS---t~agg~GLNL~~A-~~VI~~D~~-------------------------------------------- 610 (997)
+++.+|++.+ |.++++|||++++ ++||++|+|
T Consensus 317 ~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1054)
T 1gku_B 317 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 396 (1054)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHH
T ss_pred cCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6788995553 8999999999995 999999999
Q ss_pred ---------------------------CCccHHhhHHHhhhhcCCCCe--EEEEEEeeCCChHHHHHHHHHHhHHH
Q 001912 611 ---------------------------QSPSLMLQAEDRAHRRGQTSA--VNIYIFCAKDTTDESHWQNLNKSLRC 657 (997)
Q Consensus 611 ---------------------------wnp~~~~Qa~gRa~RiGQ~k~--V~Vy~Li~~gTiEe~i~~~l~~K~~~ 657 (997)
.++..|.|+.||++|.|.... ..++.+ .+ |+.++..+.+++..
T Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~--~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 397 REILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLL--ED--DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEE--CS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEE--ec--CHHHHHHHHHHHhh
Confidence 789999999999999887632 333333 33 45667666666554
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.79 E-value=6.2e-19 Score=205.22 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=84.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccE------
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQN------ 603 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~------ 603 (997)
+.++|||++.+..++.+.+.|...|+.+..+||. +|+++++.|+ +++.+| |++|.++++|||++.++.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~-~g~~~v-LVaT~v~e~GiDip~~~VI~~g~~ 244 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCK-SEKWDF-VITTDISEMGANFKADRVIDPRKT 244 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHH-HSCCSE-EEECGGGGTSCCCCCSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhc-CCCCeE-EEECchHHcCcccCCcEEEecCcc
Confidence 4589999999999999999999999999999997 5888999998 677888 899999999999984332
Q ss_pred ----------EEEecCCCCccHHhhHHHhhhhcCCCC
Q 001912 604 ----------VVFLELPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 604 ----------VI~~D~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
||+++.|.++..+.|+.||++|.|...
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 678899999999999999999998544
No 47
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=3.3e-19 Score=195.71 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=120.8
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
.|+|||.+++.+++.. +++||+++||+|||+++++++..+.. .+++|||||+ +|+.||.+++.+|.... ...+..
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEE
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEEE
Confidence 8999999999998874 66899999999999999888776543 3489999998 89999999999996532 223444
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
+.+............+|+|+||+.+.+....+ ..++++||+||||++.+ ..+..+........++++|||||
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~-------~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATG-------KSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCH-------HHHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCc-------ccHHHHHHHhhcCCeEEEEeCCC
Confidence 44433332223346789999999887653322 35789999999999962 24555544444578899999999
Q ss_pred CCCChhHHHHHHHhhcc
Q 001912 357 SLSRPYDIFHQINMLWP 373 (997)
Q Consensus 357 i~n~~~El~~ll~~l~p 373 (997)
. |...+++.+..++.|
T Consensus 263 ~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 263 R-DGKANIMQYVGMFGE 278 (282)
T ss_dssp C-TTSTTHHHHHHHHCE
T ss_pred C-CcchHHHHHHHhcCC
Confidence 6 445777777776654
No 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.78 E-value=2.4e-19 Score=209.95 Aligned_cols=94 Identities=14% Similarity=0.267 Sum_probs=86.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec-
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE- 608 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D- 608 (997)
+.++|||++.+..++.+.+.|...|+.+..+||.+ ++++++.|+ +++.+| |++|.++++|||++. ++||.+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~-~g~~~v-LVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTK-LTDWDF-VVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGG-SSCCSE-EEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhc-cCCceE-EEECCHHHhCcCCCC-CEEEECCC
Confidence 45899999999999999999999999999999976 467899999 778888 899999999999999 9999988
Q ss_pred -------------------CCCCccHHhhHHHhhhhcCCCC
Q 001912 609 -------------------LPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 609 -------------------~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
+|.++..+.|++||++|.|...
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8999999999999999999744
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.76 E-value=2.8e-18 Score=201.37 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=88.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE---
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF--- 606 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~--- 606 (997)
+.++|||++....++.+.+.|...|+.+..+||. +|.++++.|+ +++.+| |++|.++++|||+++ ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~-~g~~~i-LVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCK-NGDWDF-VITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSS-SCCCSE-EEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhcc-CCCceE-EEECChHHhCeecCC-CEEEECCc
Confidence 5689999999999999999999999999999995 6888999998 678888 899999999999999 99998
Q ss_pred -----------------ecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 607 -----------------LELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 607 -----------------~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
||+|.++..+.|++||++|.|.... ..|.|+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999996332 344555554
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=3.3e-18 Score=199.50 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE---
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF--- 606 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~--- 606 (997)
+.++|||+.....++.+.+.|...|+++..+|| ++|.++++.|+ +++..| |++|.++++|||++ +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~-~g~~~v-LVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIK-QKKPDF-ILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSE-EEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhc-CCCceE-EEECChhheeeccC-ceEEEeCCc
Confidence 568999999999999999999999999999999 46889999999 678888 89999999999999 999986
Q ss_pred ----------------ecCCCCccHHhhHHHhhhhcCCCC
Q 001912 607 ----------------LELPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 607 ----------------~D~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
++.|.++..+.|+.||++|.|..+
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 899999999999999999986433
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.75 E-value=3.9e-18 Score=207.45 Aligned_cols=95 Identities=13% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEE--
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVF-- 606 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~-- 606 (997)
.+.++|||++.+..++.+.+.|...|+.+..+||. +|.++++.|+ +++.+| |++|.++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~-~g~~~V-LVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCK-NGDWDF-VITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGG-TCCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHH-CCCceE-EEECchhhcceeeC-CcEEEECC
Confidence 36799999999999999999999999999999994 7999999999 778888 89999999999999 999997
Q ss_pred ------------------ecCCCCccHHhhHHHhhhhcCCCC
Q 001912 607 ------------------LELPQSPSLMLQAEDRAHRRGQTS 630 (997)
Q Consensus 607 ------------------~D~~wnp~~~~Qa~gRa~RiGQ~k 630 (997)
+|+|.++..+.|++||++|.|..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 678889999999999999994433
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.75 E-value=6.4e-17 Score=214.13 Aligned_cols=161 Identities=17% Similarity=0.117 Sum_probs=108.7
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHhh-----------CCcEEEEeCc-chHHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFIS-----------AGSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~~-----------~gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
..|.+.|..++..++..+.+++++.+||+|||+.|...+. .+.. .+++|+|+|. +|..|-.+++.+.
T Consensus 78 ~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~ 157 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKR 157 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4788999999999999888999999999999999865543 3332 3469999999 8999999998876
Q ss_pred CCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhh----hccccEEEeccccccccCCCCCcHHHHHHHH-
Q 001912 266 LPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMI----EQDWALLIVDESHHVRCSKRTSEPEEVKAVL- 340 (997)
Q Consensus 266 ~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~----~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~- 340 (997)
+... ...+....|............+|+|||++.+........ -...++||+||+|.+.+ .. +.....+.
T Consensus 158 ~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d---~R-G~~lE~~l~ 232 (1724)
T 4f92_B 158 LATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD---DR-GPVLEALVA 232 (1724)
T ss_dssp HTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS---TT-HHHHHHHHH
T ss_pred HhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC---cc-HHHHHHHHH
Confidence 6543 224555555443322333467999999998765432111 14678999999999953 12 22222222
Q ss_pred H------HHhhcCcEEEEeccCCCCChhHHHH
Q 001912 341 D------VAAKVKRIVLLSGTPSLSRPYDIFH 366 (997)
Q Consensus 341 ~------l~~~~~~~llLTGTPi~n~~~El~~ 366 (997)
+ ......++++||||- .++.|+..
T Consensus 233 rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 233 RAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp HHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 1 122334789999994 24555543
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.74 E-value=1.3e-17 Score=201.50 Aligned_cols=117 Identities=15% Similarity=0.264 Sum_probs=94.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE-----
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV----- 604 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V----- 604 (997)
+.++|||++.+..++.+.+.|...|+.+..+||. +|.++++.|+ +++.+| |++|.++++|||+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~-~g~~~V-LVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTK-LTDWDF-VVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHH-HSCCSE-EEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhc-CCCcEE-EEECcHHHcCcccC-ceEEEECcc
Confidence 5689999999999999999999999999999994 6888999998 667888 89999999999996 8887
Q ss_pred ---------------EEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC-hHHHHHHHHHHh
Q 001912 605 ---------------VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT-TDESHWQNLNKS 654 (997)
Q Consensus 605 ---------------I~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT-iEe~i~~~l~~K 654 (997)
|++|+|-++..+.|++||++|.|..+.. .|.|++..+ -|...+..+.++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECSCCCCCCTTCHHHHHHH
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEccCCchhhHHHHHHHHhH
Confidence 7778888999999999999999864433 455554222 233344444444
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.74 E-value=8.6e-17 Score=212.91 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=108.7
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADI 274 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i 274 (997)
..+.|.|.+++.-++..+.+++++.+||+|||+.+...+ ..+.. .+++|+|+|. +|+.|-.+++.+.+.......+
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V 1004 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKV 1004 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEE
Confidence 357799999998888878889999999999999986544 44433 5679999999 8999888887664433223345
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhh----ccccEEEeccccccccCCCCCcHHHHHHHHHHH-------
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIE----QDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA------- 343 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~----~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~------- 343 (997)
....|............+|+|+|++.+......+.. .+.++||+||+|++... . ...+..+....
T Consensus 1005 ~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~---r-g~~le~il~rl~~i~~~~ 1080 (1724)
T 4f92_B 1005 VLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE---N-GPVLEVICSRMRYISSQI 1080 (1724)
T ss_dssp EECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST---T-HHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC---C-CccHHHHHHHHHHHHhhc
Confidence 555553322222223578999999998665433221 36799999999999631 1 22233222211
Q ss_pred hhcCcEEEEeccCCCCChhHHHHHH
Q 001912 344 AKVKRIVLLSGTPSLSRPYDIFHQI 368 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n~~~El~~ll 368 (997)
....+.++||||- .++.|+...+
T Consensus 1081 ~~~~riI~lSATl--~N~~dla~WL 1103 (1724)
T 4f92_B 1081 ERPIRIVALSSSL--SNAKDVAHWL 1103 (1724)
T ss_dssp SSCCEEEEEESCB--TTHHHHHHHH
T ss_pred CCCceEEEEeCCC--CCHHHHHHHh
Confidence 1234689999994 2456655444
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=9.6e-17 Score=194.69 Aligned_cols=106 Identities=23% Similarity=0.318 Sum_probs=94.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhcc-CCCceEEEEeccccccccCcccccEEEEecC--
Q 001912 533 MIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQL-SNEVKIAIIGITAGGVGLDFSSAQNVVFLEL-- 609 (997)
Q Consensus 533 vLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~-~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~-- 609 (997)
.+||+.....++.+.+.|...|+.+..+||+++.++|..+++.|++ ++..+| |++|.+++.|||+ .+++||++++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCccc
Confidence 4788888999999999999999999999999999999999999994 266788 9999999999999 9999999999
Q ss_pred ------------CCCccHHhhHHHhhhhcCCC-CeEEEEEEeeC
Q 001912 610 ------------PQSPSLMLQAEDRAHRRGQT-SAVNIYIFCAK 640 (997)
Q Consensus 610 ------------~wnp~~~~Qa~gRa~RiGQ~-k~V~Vy~Li~~ 640 (997)
|++++.+.|+.||++|.|+. ..-.||.+..+
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 44667776544
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.72 E-value=6.7e-17 Score=200.18 Aligned_cols=309 Identities=13% Similarity=0.116 Sum_probs=192.2
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-hC--C-cEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-SA--G-SILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-~~--g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
+.+.|++.+..++..+..+++..++|+|||.+.-.++.... .. + .++|++|. .+..|+.+.+.+.+.......+.
T Consensus 94 P~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG 173 (773)
T 2xau_A 94 PVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVG 173 (773)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEE
T ss_pred ChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheec
Confidence 44678888888888777799999999999995444433221 11 4 48999999 77788888787766432222222
Q ss_pred EEccCCCCcccccCCCeEEEEehhHHHHHHHh-hhhccccEEEeccccc-cccCCCCCcHHH-HHHHHHHHh--hcCcEE
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS-MIEQDWALLIVDESHH-VRCSKRTSEPEE-VKAVLDVAA--KVKRIV 350 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~-l~~~~~~~VIvDEaH~-iKN~~~~~~s~~-~~al~~l~~--~~~~~l 350 (997)
.... . ........+|+++|.+.+.+.... ..-.++++||+||+|. .- .... ...+..+.. ...+++
T Consensus 174 ~~i~-~--~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~l------d~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 174 YSIR-F--ENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTL------ATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp EEET-T--EEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCH------HHHHHHHHHHHHHHHCTTCEEE
T ss_pred ceec-c--ccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcccccc------chHHHHHHHHHHHHhCCCceEE
Confidence 1111 0 011223578999999998764322 2236789999999995 21 1111 112222221 235689
Q ss_pred EEeccCCCCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhh
Q 001912 351 LLSGTPSLSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHL 430 (997)
Q Consensus 351 lLTGTPi~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v 430 (997)
++|||+- ..++.. ++.. ...+ ...+.
T Consensus 245 l~SAT~~---~~~l~~---~~~~----------------~~vi-~v~gr------------------------------- 270 (773)
T 2xau_A 245 IMSATLD---AEKFQR---YFND----------------APLL-AVPGR------------------------------- 270 (773)
T ss_dssp EEESCSC---CHHHHH---HTTS----------------CCEE-ECCCC-------------------------------
T ss_pred EEecccc---HHHHHH---HhcC----------------CCcc-cccCc-------------------------------
Confidence 9999982 222211 1110 0000 00000
Q ss_pred hccCCCceEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhc
Q 001912 431 LVQLPPKRRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLS 510 (997)
Q Consensus 431 ~~~LP~k~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~ 510 (997)
..| ....++.....+. .. ..+..+.+...
T Consensus 271 --~~p---v~~~~~~~~~~~~--~~--------------------------------------------~~l~~l~~~~~ 299 (773)
T 2xau_A 271 --TYP---VELYYTPEFQRDY--LD--------------------------------------------SAIRTVLQIHA 299 (773)
T ss_dssp --CCC---EEEECCSSCCSCH--HH--------------------------------------------HHHHHHHHHHH
T ss_pred --ccc---eEEEEecCCchhH--HH--------------------------------------------HHHHHHHHHHH
Confidence 001 0011100000000 00 00001111111
Q ss_pred cCccccccCccccccccCCCCeEEEEeCCHHHHHHHHHHHHH-----------cCCeEEEEeCCCCHHHHHHHHHHhcc-
Q 001912 511 IHPVIAESDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISE-----------KGIGFVRIDGNTLPRDRQSAVHSFQL- 578 (997)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~-----------~gi~~~~idG~~s~~eR~~~i~~F~~- 578 (997)
...+.++|||+.....++.+.+.|.. .++.+..+||+++.++|.++++.|..
T Consensus 300 ----------------~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 300 ----------------TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp ----------------HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred ----------------hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 12467999999999999999998875 57889999999999999999999972
Q ss_pred ---CCCceEEEEeccccccccCcccccEEEEecC------------------CCCccHHhhHHHhhhhcCCCCeEEEEEE
Q 001912 579 ---SNEVKIAIIGITAGGVGLDFSSAQNVVFLEL------------------PQSPSLMLQAEDRAHRRGQTSAVNIYIF 637 (997)
Q Consensus 579 ---~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~------------------~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~L 637 (997)
++..+| |++|.++++|||+.+.++||.++. |.+...+.|+.||++|. ++-.+|+|
T Consensus 364 ~~~~g~~kV-lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l 439 (773)
T 2xau_A 364 HNGRPGRKV-VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRL 439 (773)
T ss_dssp SSSSCCEEE-EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEES
T ss_pred cCCCCceEE-EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEE
Confidence 456777 899999999999999999999766 88999999999999997 44567788
Q ss_pred eeCCCh
Q 001912 638 CAKDTT 643 (997)
Q Consensus 638 i~~gTi 643 (997)
+++...
T Consensus 440 ~~~~~~ 445 (773)
T 2xau_A 440 YTEEAF 445 (773)
T ss_dssp SCHHHH
T ss_pred ecHHHh
Confidence 765433
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.72 E-value=1.8e-17 Score=198.86 Aligned_cols=276 Identities=19% Similarity=0.187 Sum_probs=175.9
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEcc
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFG 279 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g 279 (997)
++++|.+.+.. +..+..+|+..++|+|||.+....+.. ....+||++|+ .|..|+.+.+.+.+... +....+
T Consensus 218 ~~~~q~~i~~~-L~~~~~vlv~ApTGSGKT~a~~l~ll~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~----vg~~vG 290 (666)
T 3o8b_A 218 VFTDNSSPPAV-PQSFQVAHLHAPTGSGKSTKVPAAYAA--QGYKVLVLNPSVAATLGFGAYMSKAHGID----PNIRTG 290 (666)
T ss_dssp SCCCCCSCCCC-CSSCEEEEEECCTTSCTTTHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECS
T ss_pred cHHHHHHHHHH-HHcCCeEEEEeCCchhHHHHHHHHHHH--CCCeEEEEcchHHHHHHHHHHHHHHhCCC----eeEEEC
Confidence 34555444433 333556888999999999877654432 33489999999 78889988888766432 223333
Q ss_pred CCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc--EEEEeccCC
Q 001912 280 HRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR--IVLLSGTPS 357 (997)
Q Consensus 280 ~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~--~llLTGTPi 357 (997)
... .....+|+|+|++.|... ..+...++++|||||||.+-- ........+......... .+++||||-
T Consensus 291 ~~~----~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~----~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 291 VRT----ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDS----TTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp SCE----ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSH----HHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred cEe----ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCc----cHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 221 234678999999998432 223345799999999998721 001113334444332333 577899985
Q ss_pred CCChhHHHHHHHhhccCCccchhHHHHHHhhccccccccccchhhhhhhhccHHHHHHHHHhHHHHHHHhhhhhccCCCc
Q 001912 358 LSRPYDIFHQINMLWPGLLGKAKYDFAKTYCDVKTVQGYQGQLFQDFSKGVRLEELNVLLKQTVMIRRLKQHLLVQLPPK 437 (997)
Q Consensus 358 ~n~~~El~~ll~~l~p~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~~l~~~~~lRR~k~~v~~~LP~k 437 (997)
.. +... .|.
T Consensus 362 ~~----------------i~~~------------------------------------------------------~p~- 370 (666)
T 3o8b_A 362 GS----------------VTVP------------------------------------------------------HPN- 370 (666)
T ss_dssp TC----------------CCCC------------------------------------------------------CTT-
T ss_pred cc----------------cccC------------------------------------------------------Ccc-
Confidence 31 0000 000
Q ss_pred eEEEEEEecChhHHHHHHHHHHHHhhhccccCCCCCCCCCCccccchhhhcccccchhhhhhhhhhhhhhhhccCccccc
Q 001912 438 RRQIIRLLLKRSEIVSAKAAVGVINDSEKDATNDKTPKDSDEHDDSGACCRLGKISYQELGIAKLSGFREWLSIHPVIAE 517 (997)
Q Consensus 438 ~~~~i~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~K~~~~~~~l~~~~~~~~ 517 (997)
...+.+..... + .... ... . +
T Consensus 371 -i~~v~~~~~~~-----------i-------------------~~~~-----~~~----------~-----l-------- 391 (666)
T 3o8b_A 371 -IEEVALSNTGE-----------I-------------------PFYG-----KAI----------P-----I-------- 391 (666)
T ss_dssp -EEEEECBSCSS-----------E-------------------EETT-----EEE----------C-----G--------
T ss_pred -eEEEeecccch-----------h-------------------HHHH-----hhh----------h-----h--------
Confidence 00000000000 0 0000 000 0 0
Q ss_pred cCccccccccCCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccC
Q 001912 518 SDGAADIDVNPRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLD 597 (997)
Q Consensus 518 ~~~~~~~~~~~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLN 597 (997)
....+.++|||++.+..++.+.+.|...|+.+..+||+++.++ |. .+..+| |++|.+++.|||
T Consensus 392 --------~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~-~~~~~V-LVATdVaerGID 454 (666)
T 3o8b_A 392 --------EAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IP-TIGDVV-VVATDALMTGYT 454 (666)
T ss_dssp --------GGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SC-SSSCEE-EEECTTHHHHCC
T ss_pred --------hhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HH-hCCCcE-EEECChHHccCC
Confidence 0124679999999999999999999999999999999998764 44 233466 999999999999
Q ss_pred cccccEEE----------Eec-----------CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChH
Q 001912 598 FSSAQNVV----------FLE-----------LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTD 644 (997)
Q Consensus 598 L~~A~~VI----------~~D-----------~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiE 644 (997)
+. .++|| +|| .|-++..+.|++||++| |.. .. |.|+..+..+
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~-G~--i~lvt~~e~~ 517 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR-GI--YRFVTPGERP 517 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC-EE--EEESCCCCBC
T ss_pred CC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC-CE--EEEEecchhh
Confidence 86 99888 566 78889999999999999 654 33 6777776543
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.71 E-value=4.1e-17 Score=174.22 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=107.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce-EEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPAD-IHL 276 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~-i~~ 276 (997)
..|+|||.+++..++. ++++|++++||+|||+++++++... .+++|||||+ +|+.||.+++.+| + .. +..
T Consensus 92 ~~l~~~Q~~ai~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~-~----~~~v~~ 163 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV-DKRGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIF-G----EEYVGE 163 (237)
T ss_dssp CCCCHHHHHHHHHHTT-TSEEEEEESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGG-C----GGGEEE
T ss_pred CCcCHHHHHHHHHHHh-CCCEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhC-C----CCeEEE
Confidence 4799999999998776 4568999999999999999887764 6789999999 8999999999994 2 23 555
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
+.+.... ..+|+|+||+.+......+ ...|++|||||+|++.+. .+..+.... ...++++|||||
T Consensus 164 ~~g~~~~------~~~i~v~T~~~l~~~~~~~-~~~~~llIiDEaH~l~~~-------~~~~i~~~~-~~~~~l~LSATp 228 (237)
T 2fz4_A 164 FSGRIKE------LKPLTVSTYDSAYVNAEKL-GNRFMLLIFDEVHHLPAE-------SYVQIAQMS-IAPFRLGLTATF 228 (237)
T ss_dssp ESSSCBC------CCSEEEEEHHHHHHTHHHH-TTTCSEEEEECSSCCCTT-------THHHHHHTC-CCSEEEEEEESC
T ss_pred EeCCCCC------cCCEEEEeHHHHHhhHHHh-cccCCEEEEECCccCCCh-------HHHHHHHhc-cCCEEEEEecCC
Confidence 5554332 4689999999998766654 256999999999999642 144454443 467899999999
Q ss_pred CCCC
Q 001912 357 SLSR 360 (997)
Q Consensus 357 i~n~ 360 (997)
..++
T Consensus 229 ~r~D 232 (237)
T 2fz4_A 229 ERED 232 (237)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 59
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.70 E-value=3.4e-16 Score=189.28 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=86.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc--------c
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS--------S 600 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~--------~ 600 (997)
.+.++||||......+.|...|...|+++..+||.+...+|..+...|+ ...| +++|.++|.|+|+. +
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~---~g~V-lIATdmAgRG~DI~l~~~V~~~g 506 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ---KGAV-TIATNMAGRGTDIKLGEGVKELG 506 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS---TTCE-EEEETTSSTTCCCCCCTTSGGGT
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC---CCeE-EEeCCccccCcCccccchhhhcC
Confidence 4678999999999999999999999999999999997777765555555 2456 89999999999998 7
Q ss_pred ccEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 601 A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
..+||.+|.|-++..|.|++||++|.|..-.
T Consensus 507 gl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 507 GLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp SEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred CcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 8899999999999999999999999997543
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.69 E-value=1.2e-16 Score=160.38 Aligned_cols=119 Identities=16% Similarity=0.344 Sum_probs=103.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||+++...++.+.+.|...|+.+..+||+++..+|..+++.|+ +++..| |++|+++++|+|++.+++||++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-~g~~~v-lv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK-RGEYRY-LVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCSE-EEECGGGTTTCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-cCCCeE-EEECChhhcCCchhcCCEEEEeC
Confidence 4679999999999999999999999999999999999999999999999 677888 78999999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHH
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~ 653 (997)
+|||+..+.|++||++|.|+...+ +.|+... |...+..+.+
T Consensus 112 ~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 112 LPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp CCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred CCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999987554 4444433 4445544443
No 61
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=1.3e-16 Score=161.54 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=97.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||+++...++.+.+.|...|+.+..+||+++..+|..+++.|+ +++..| |++|.++++|+|++.+++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-~g~~~v-LvaT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-DFQRRI-LVATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCSE-EEESSCCSTTCCGGGCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH-CCCCcE-EEECCchhcCcchhhCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999999 778888 78889999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
+|||+..+.|++||++|.|+...+.+
T Consensus 108 ~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 108 MPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp CCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred CCCCHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999999999998765443
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.68 E-value=3.7e-16 Score=188.40 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=88.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccc------
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA------ 601 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A------ 601 (997)
..+.+|||||......+.|...|...|+++..++|.....+|..+.+.|+ .+ .| +++|..+|.|+|+...
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr-~G--~V-tIATnmAgRGtDI~l~gn~~~~ 514 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGY-PA--AV-TIATNMAGRGTDIVLGGSWQAE 514 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTS-TT--CE-EEEESCCSSCSCCCTTCCHHHH
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC-CC--eE-EEecccccCCcCccCCCchHhh
Confidence 46789999999999999999999999999999999997777777777887 33 45 8999999999999763
Q ss_pred -------------------------------cEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 602 -------------------------------QNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 602 -------------------------------~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
.+||.+|.|-++..+.|++||++|.|..-.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 515 VAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred hhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 599999999999999999999999997543
No 63
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.67 E-value=1.4e-15 Score=183.41 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=87.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccc------
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSA------ 601 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A------ 601 (997)
..+.+|||||......+.|...|...|+++..++|.....++..+.+.|+ .+ .| +++|..+|.|+|+...
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr-~G--~V-tIATnmAgRGtDI~l~~~~~~~ 533 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR-RG--GV-TVATNMAGRGTDIVLGGNVDFL 533 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS-TT--CE-EEEETTCSTTCCCCTTCCHHHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC-CC--eE-EEecchhhcCccccCCCCHHHH
Confidence 35778999999999999999999999999999999987666666667776 33 56 8899999999999853
Q ss_pred ----------------------------------------------cEEEEecCCCCccHHhhHHHhhhhcCCCCe
Q 001912 602 ----------------------------------------------QNVVFLELPQSPSLMLQAEDRAHRRGQTSA 631 (997)
Q Consensus 602 ----------------------------------------------~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~ 631 (997)
.+||.+|.+-++..+.|++||++|.|..-.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~ 609 (922)
T 1nkt_A 534 TDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGE 609 (922)
T ss_dssp HHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEE
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCee
Confidence 599999999999999999999999997543
No 64
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=163.43 Aligned_cols=109 Identities=24% Similarity=0.447 Sum_probs=85.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||++....++.|.+.|...|+.+..++|+++..+|..+++.|+ ++++.| |++|+++++|+|++.+++||++|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~-~g~~~v-LvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR-SGKSPI-LVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH-HTSSSE-EEEEC------CCCSBSEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH-cCCCeE-EEEcChhhcCCCcccCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999 677887 78889999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
+|||+..+.|++||++|.|+... ++.|+...
T Consensus 123 ~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 123 LPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp CCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred CCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 99999999999999999997644 44455543
No 65
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=161.51 Aligned_cols=108 Identities=23% Similarity=0.430 Sum_probs=95.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecC
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~ 609 (997)
+.|+|||+++...++.+.+.|...|+.+..++|+++..+|.++++.|+ +++..| |++|.++++|+|++.+++||+||+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~-~g~~~v-LvaT~~~~~Gldi~~v~~VI~~d~ 131 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFR-EGKKDV-LVATDVASKGLDFPAIQHVINYDM 131 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH-HTSCSE-EEECHHHHTTCCCCCCSEEEESSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCEE-EEEcCchhcCCCcccCCEEEEeCC
Confidence 468999999999999999999999999999999999999999999999 567887 888999999999999999999999
Q ss_pred CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCC
Q 001912 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKD 641 (997)
Q Consensus 610 ~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~g 641 (997)
|||+..+.|++||++|.|+...+ +.|+...
T Consensus 132 p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 132 PEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp CSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 99999999999999999997644 3445443
No 66
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=162.73 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=91.9
Q ss_pred ChhhhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-------CCcEEEEeCc-chHHH-HHHHHHH
Q 001912 194 PKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-------AGSILVVCPA-ILRLS-WAEELER 264 (997)
Q Consensus 194 p~~l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-------~gp~LIV~P~-sL~~q-W~~Ei~k 264 (997)
+......|+|||.+++..++. +.++|+..+||+|||++++.++..... .+++|||||+ .|+.| |.+++.+
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHT-TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CccCCCCchHHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 334445899999999998886 568999999999999999887765432 4689999999 78899 9999999
Q ss_pred HCCCCCCceEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh--------hhhccccEEEeccccccc
Q 001912 265 WLPFCLPADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS--------MIEQDWALLIVDESHHVR 325 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~--------l~~~~~~~VIvDEaH~iK 325 (997)
|.+.. ..+....|...... ......+|+|+||+.+...... +...+|++||+||||++.
T Consensus 106 ~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 106 FLKKW--YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp HHTTT--SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred HhccC--ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 97642 23444444332211 1122478999999999876543 234688999999999985
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.64 E-value=6.2e-16 Score=155.48 Aligned_cols=111 Identities=15% Similarity=0.288 Sum_probs=96.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||++....++.+...|...|+.+..+||+++..+|..+++.|+ +++.+| |++|.++++|+|++.+++||++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~g~~~v-lv~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-SGSSRI-LISTDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-TTSCSE-EEEEGGGTTTCCCCSCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-cCCCEE-EEEcChhhcCCCcccCCEEEEeC
Confidence 4679999999999999999999999999999999999999999999999 777888 78889999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCCh
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTT 643 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTi 643 (997)
+||++..+.|++||++|.|+... ++.|+..+..
T Consensus 107 ~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 107 LPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp CCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999997654 4556666643
No 68
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=153.16 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=95.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||+++...++.+...|...|+.+..+||+++..+|..+++.|+ ++.++| |++|.++++|+|++.+++||+||
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~-~g~~~v-LvaT~~~~~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR-DGKEKV-LITTNVCARGIDVKQVTIVVNFD 110 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH-TTSCSE-EEECCSCCTTTCCTTEEEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-cCCCeE-EEEecchhcCCCcccCCEEEEeC
Confidence 4679999999999999999999999999999999999999999999999 677888 88999999999999999999999
Q ss_pred CC------CCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC
Q 001912 609 LP------QSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642 (997)
Q Consensus 609 ~~------wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT 642 (997)
+| +++..+.|++||++|.|+. -.++.|+..+.
T Consensus 111 ~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 111 LPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 99 6778999999999999965 45566666554
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=9.9e-16 Score=159.49 Aligned_cols=152 Identities=23% Similarity=0.226 Sum_probs=108.7
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh-------hCCcEEEEeCc-chHHHHHHHHHHHCCCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI-------SAGSILVVCPA-ILRLSWAEELERWLPFCL 270 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~-------~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~ 270 (997)
..|+|||.+++..++. +.++|+..+||+|||++++..+.... ...++|||||+ +|+.||.+++.++.+..
T Consensus 22 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 99 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE-GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL- 99 (207)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTS-
T ss_pred CCCCHHHHHHHHHHcC-CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcc-
Confidence 4789999999998876 67799999999999999776555443 23469999999 99999999999998763
Q ss_pred CceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 271 PADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 271 ~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
.+....|..... ..+....+|+|+|++.+...... +.-.++++||+||||++.+.. .......+......
T Consensus 100 --~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~---~~~~~~~i~~~~~~ 174 (207)
T 2gxq_A 100 --KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG---FEEEVEALLSATPP 174 (207)
T ss_dssp --CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT---CHHHHHHHHHTSCT
T ss_pred --eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc---hHHHHHHHHHhCCc
Confidence 344444433221 11223578999999998775443 223578999999999986422 22334444443333
Q ss_pred cCcEEEEeccCC
Q 001912 346 VKRIVLLSGTPS 357 (997)
Q Consensus 346 ~~~~llLTGTPi 357 (997)
..+++++|||+-
T Consensus 175 ~~~~i~~SAT~~ 186 (207)
T 2gxq_A 175 SRQTLLFSATLP 186 (207)
T ss_dssp TSEEEEECSSCC
T ss_pred cCeEEEEEEecC
Confidence 567899999984
No 70
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.39 E-value=6.5e-17 Score=163.51 Aligned_cols=104 Identities=17% Similarity=0.401 Sum_probs=97.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.|+|||+++...++.+.+.|...|+.+..+||+++..+|..+++.|+ ++++.| |++|.++++|+|++.+++||++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~-~g~~~v-LvaT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT-EGRVNV-LVATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 4679999999999999999999999999999999999999999999999 677777 88999999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEE
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNI 634 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~V 634 (997)
+|||+..+.|++||++|.|+...+.+
T Consensus 107 ~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 107 MPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 99999999999999999998765543
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=4.8e-15 Score=156.05 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=109.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++..++. +.++|+..+||+|||+.++..+..... ..++|||||+ .|+.||.+++.++........
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 113 (220)
T 1t6n_A 35 EHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 113 (220)
T ss_dssp CCCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCce
Confidence 3699999999998887 567999999999999998877665533 2379999999 999999999999976543344
Q ss_pred EEEEccCCCCccc---c-cCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNPVH---L-TRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~~~---~-~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
+....|....... + ....+|+|+|++.+...... +...++++||+||||++.... ........+........
T Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~~i~~~~~~~~ 191 (220)
T 1t6n_A 114 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL--DMRRDVQEIFRMTPHEK 191 (220)
T ss_dssp EEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSH--HHHHHHHHHHHTSCSSS
T ss_pred EEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhccc--CcHHHHHHHHHhCCCcC
Confidence 5555554332111 1 12458999999998775443 223578999999999985210 01122223333322345
Q ss_pred cEEEEeccCCC
Q 001912 348 RIVLLSGTPSL 358 (997)
Q Consensus 348 ~~llLTGTPi~ 358 (997)
+++++||||-.
T Consensus 192 ~~i~~SAT~~~ 202 (220)
T 1t6n_A 192 QVMMFSATLSK 202 (220)
T ss_dssp EEEEEESCCCT
T ss_pred eEEEEEeecCH
Confidence 78999999854
No 72
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.59 E-value=3.1e-13 Score=165.00 Aligned_cols=109 Identities=17% Similarity=0.329 Sum_probs=98.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.++|||+.....++.|.+.|...|+++..+||+++..+|.++++.|+ .+.+.| |++|.+++.|+|++.+++||++|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~-~g~~~V-LvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLR-LGHYDC-LVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH-TTSCSE-EEESCCCCTTCCCTTEEEEEETT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhh-cCCceE-EEccChhhcCccCCCCCEEEEeC
Confidence 4679999999999999999999999999999999999999999999998 678887 88999999999999999999999
Q ss_pred C-----CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC
Q 001912 609 L-----PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642 (997)
Q Consensus 609 ~-----~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT 642 (997)
. ++++..+.|++||++|.|. -.++.|+...+
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 8 8999999999999999863 23555666554
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.59 E-value=9.4e-15 Score=153.80 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=107.8
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCC---
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCL--- 270 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~--- 270 (997)
..++|||.+++..++. +.++|+..+||+|||+.++..+..... ..++|||+|+ .|+.||.+++.++.....
T Consensus 25 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 103 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR-GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDR 103 (219)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccccc
Confidence 3689999999998886 578999999999999997665554432 3469999999 899999999999876431
Q ss_pred CceEEEEccCCCC---cccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh
Q 001912 271 PADIHLVFGHRNN---PVHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK 345 (997)
Q Consensus 271 ~~~i~~~~g~~~~---~~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~ 345 (997)
...+....|.... ...+....+|+|+|++.+...... +....+++||+||||++.+.. .......+......
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~---~~~~l~~i~~~~~~ 180 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG---FITDVDQIAARMPK 180 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT---CHHHHHHHHHTSCT
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC---hHHHHHHHHHhCCc
Confidence 1234444443321 122334678999999998875442 223578999999999986432 12233344433333
Q ss_pred cCcEEEEeccC
Q 001912 346 VKRIVLLSGTP 356 (997)
Q Consensus 346 ~~~~llLTGTP 356 (997)
..+++++|||+
T Consensus 181 ~~~~l~~SAT~ 191 (219)
T 1q0u_A 181 DLQMLVFSATI 191 (219)
T ss_dssp TCEEEEEESCC
T ss_pred ccEEEEEecCC
Confidence 45689999997
No 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.59 E-value=5.6e-15 Score=154.84 Aligned_cols=120 Identities=15% Similarity=0.337 Sum_probs=102.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEec
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLE 608 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D 608 (997)
.+.++|||++....++.+.+.|...|+.+..+||+++..+|..+++.|+ ++..+| |++|.++++|||++++++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~-~g~~~v-lvaT~~~~~Gidi~~v~~Vi~~~ 107 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR-QGEVRV-LVATDVAARGLDIPQVDLVVHYR 107 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHH-SSSCCE-EEECTTTTCSSSCCCBSEEEESS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-CCCCeE-EEecChhhcCCCCccCcEEEECC
Confidence 4679999999999999999999999999999999999999999999999 678888 88999999999999999999999
Q ss_pred CCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHHh
Q 001912 609 LPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNKS 654 (997)
Q Consensus 609 ~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~K 654 (997)
+||++..+.|++||++|.|+.. .++.|+... |...+..+.+.
T Consensus 108 ~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~~ 149 (212)
T 3eaq_A 108 LPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALERA 149 (212)
T ss_dssp CCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHHH
T ss_pred CCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHHH
Confidence 9999999999999999999764 344555543 44444444433
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.59 E-value=1.4e-14 Score=150.76 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=110.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++..++. +.++|+..+||+|||+.++..+..... ..++|||+|+ .|+.||.+++.++........
T Consensus 24 ~~~~~~Q~~~i~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 102 (206)
T 1vec_A 24 EKPSPIQEESIPIALS-GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAK 102 (206)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCC
T ss_pred CCCCHHHHHHHHHHcc-CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 3789999999998776 567999999999999988765554432 2369999999 899999999999986543334
Q ss_pred EEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCc
Q 001912 274 IHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKR 348 (997)
Q Consensus 274 i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~ 348 (997)
+....|..... .......+|+|+|++.+...... +...++++||+||||++... ........+........+
T Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~---~~~~~l~~i~~~~~~~~~ 179 (206)
T 1vec_A 103 VMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLPKNRQ 179 (206)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST---TTHHHHHHHHHHSCTTCE
T ss_pred EEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh---CcHHHHHHHHHhCCccce
Confidence 55555543321 12334678999999998765442 22247899999999998542 122334444444434567
Q ss_pred EEEEeccCC
Q 001912 349 IVLLSGTPS 357 (997)
Q Consensus 349 ~llLTGTPi 357 (997)
++++|||+-
T Consensus 180 ~l~~SAT~~ 188 (206)
T 1vec_A 180 ILLYSATFP 188 (206)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeeCC
Confidence 899999983
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=155.05 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=108.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--------hCCcEEEEeCc-chHHHHHHHHHHHCCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--------SAGSILVVCPA-ILRLSWAEELERWLPFC 269 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--------~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~ 269 (997)
..|+|||.+++..++. |.++|+..+||+|||++++..+.... ...++|||+|+ .|+.||.+++.++....
T Consensus 46 ~~~~~~Q~~~i~~~~~-~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 124 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ-GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH 124 (236)
T ss_dssp CBCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC
Confidence 4789999999998876 67799999999999998776544332 23469999999 99999999999998653
Q ss_pred CCceEEEEccCCCCcc--cccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHh
Q 001912 270 LPADIHLVFGHRNNPV--HLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAA 344 (997)
Q Consensus 270 ~~~~i~~~~g~~~~~~--~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~ 344 (997)
. ..+....|...... ......+|+|+|++.+...... +...++++||+||||++.+.. .......+.....
T Consensus 125 ~-~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~---~~~~~~~i~~~~~ 200 (236)
T 2pl3_A 125 D-FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG---FADTMNAVIENLP 200 (236)
T ss_dssp S-CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT---THHHHHHHHHTSC
T ss_pred C-eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC---cHHHHHHHHHhCC
Confidence 2 23444444433221 1123679999999999775443 223578999999999986532 1233444444443
Q ss_pred hcCcEEEEeccCC
Q 001912 345 KVKRIVLLSGTPS 357 (997)
Q Consensus 345 ~~~~~llLTGTPi 357 (997)
...++++||||+-
T Consensus 201 ~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 201 KKRQTLLFSATQT 213 (236)
T ss_dssp TTSEEEEEESSCC
T ss_pred CCCeEEEEEeeCC
Confidence 4556899999974
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=2.3e-14 Score=152.17 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=109.7
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHH-HHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIA-ACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~-~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..++|||.+++..++. |.++|+..+||+|||++++..+ ..+.. ..++|||||+ .|+.||.+++.++........
T Consensus 45 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 123 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC-GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLE 123 (230)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCce
Confidence 3689999999998776 6789999999999999965544 33322 3479999999 899999999999976443344
Q ss_pred EEEEccCCCCcc--cccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 274 IHLVFGHRNNPV--HLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 274 i~~~~g~~~~~~--~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
+....|...... ......+|+|+|++.+...... +...++++||+||||++-+.+ ........+........++
T Consensus 124 ~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~~i~~~~~~~~~~ 201 (230)
T 2oxc_A 124 CHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG--SFQEQINWIYSSLPASKQM 201 (230)
T ss_dssp EEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTT--SSHHHHHHHHHHSCSSCEE
T ss_pred EEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCc--chHHHHHHHHHhCCCCCeE
Confidence 555555433211 1223579999999999875432 223578999999999986421 1233444555544445678
Q ss_pred EEEeccC
Q 001912 350 VLLSGTP 356 (997)
Q Consensus 350 llLTGTP 356 (997)
+++|||+
T Consensus 202 l~lSAT~ 208 (230)
T 2oxc_A 202 LAVSATY 208 (230)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9999996
No 78
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.56 E-value=2.5e-14 Score=150.93 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=105.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHh---hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFI---SAGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~---~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++..++. +.++|+..+||+|||++++..+. .+. ...++|||+|+ .|+.||.+++.++..... ..
T Consensus 35 ~~~~~~Q~~~i~~~~~-~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~ 112 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE-GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD-IK 112 (224)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CC
T ss_pred CCCcHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC-ce
Confidence 4799999999998876 56799999999999999654443 332 23479999999 899999999999976543 23
Q ss_pred EEEEccCCCCcc--cccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 274 IHLVFGHRNNPV--HLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 274 i~~~~g~~~~~~--~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
+....|...... ......+|+|+|++.+...... +...++++||+||||++.+.. .......+........++
T Consensus 113 ~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~---~~~~l~~i~~~~~~~~~~ 189 (224)
T 1qde_A 113 VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG---FKEQIYQIFTLLPPTTQV 189 (224)
T ss_dssp EEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT---CHHHHHHHHHHSCTTCEE
T ss_pred EEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh---hHHHHHHHHHhCCccCeE
Confidence 444444332211 1122479999999998765432 223568999999999986432 223344444444345678
Q ss_pred EEEeccCC
Q 001912 350 VLLSGTPS 357 (997)
Q Consensus 350 llLTGTPi 357 (997)
++||||+-
T Consensus 190 i~lSAT~~ 197 (224)
T 1qde_A 190 VLLSATMP 197 (224)
T ss_dssp EEEESSCC
T ss_pred EEEEeecC
Confidence 99999984
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.53 E-value=5.3e-14 Score=150.04 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=105.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..|+|||.+++..++. +.++|+..+||+|||++++..+..... ..++|||+|+ .|..||.+++.++...... .
T Consensus 51 ~~~~~~Q~~ai~~i~~-~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~ 128 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK-GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA-T 128 (237)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-C
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc-e
Confidence 3699999999998876 567999999999999997665554432 3479999999 8999999999999765432 3
Q ss_pred EEEEccCCCCc---ccccC-CCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNP---VHLTR-FPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~---~~~~~-~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
+....+..... ..+.. ..+|+|+|++.+...... +....+++||+||||++.... .......+........
T Consensus 129 ~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~---~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 129 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG---FKDQIYEIFQKLNTSI 205 (237)
T ss_dssp EEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT---CHHHHHHHHHHSCTTC
T ss_pred EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC---cHHHHHHHHHhCCCCC
Confidence 33343332221 11222 378999999998765432 223468999999999985322 1233344444433456
Q ss_pred cEEEEeccCC
Q 001912 348 RIVLLSGTPS 357 (997)
Q Consensus 348 ~~llLTGTPi 357 (997)
+++++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 7899999984
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.53 E-value=6.2e-13 Score=157.22 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcc--------c
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFS--------S 600 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~--------~ 600 (997)
.+.+|||||......+.|...|...|+++..++|.....+|..+...|+ . ..| +++|..+|.|+|+. +
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~-~--g~V-tVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ-K--GMV-TIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS-T--TCE-EEEETTTTTTCCCCCCTTTTTTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC-C--CeE-EEEcchhhCCcCccCCcchhhcC
Confidence 5789999999999999999999999999999999965555554455565 2 345 99999999999997 6
Q ss_pred ccEEEEecCCCCccHHhhHHHhhhhcCCCCeE
Q 001912 601 AQNVVFLELPQSPSLMLQAEDRAHRRGQTSAV 632 (997)
Q Consensus 601 A~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V 632 (997)
..+||.+|+|-++..+.|++||++|.|..-..
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 67999999999999999999999999976543
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=152.92 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=107.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-Hhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCce
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPAD 273 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~ 273 (997)
..++|||.+++..++. |.++|+..+||+|||++++..+.. +.. ..++|||+|+ .|..||.+++.++...... .
T Consensus 64 ~~~~~~Q~~~i~~i~~-~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~-~ 141 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ-GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV-Q 141 (249)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC-C
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe-e
Confidence 3789999999998876 677999999999999997655443 322 2359999999 8999999999998654322 3
Q ss_pred EEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcC
Q 001912 274 IHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVK 347 (997)
Q Consensus 274 i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~ 347 (997)
+....|..... ..+....+|+|+|++.+...... +....+++||+||||++.+.. .......+........
T Consensus 142 ~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~---~~~~l~~i~~~~~~~~ 218 (249)
T 3ber_A 142 SAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD---FETEVDKILKVIPRDR 218 (249)
T ss_dssp EEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT---CHHHHHHHHHSSCSSS
T ss_pred EEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC---hHHHHHHHHHhCCCCC
Confidence 44444433221 11234679999999999775543 223468999999999986532 1223344444333456
Q ss_pred cEEEEeccCC
Q 001912 348 RIVLLSGTPS 357 (997)
Q Consensus 348 ~~llLTGTPi 357 (997)
+++++|||+-
T Consensus 219 ~~l~~SAT~~ 228 (249)
T 3ber_A 219 KTFLFSATMT 228 (249)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEeccCC
Confidence 7899999984
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.51 E-value=5.9e-14 Score=151.10 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=106.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-------------CCcEEEEeCc-chHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-------------AGSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-------------~gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
..|+|||.+++..++. +.++|+..+||+|||+.++..+..... ..++|||||+ .|+.||.+++.+
T Consensus 44 ~~~~~~Q~~~i~~i~~-~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE-HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK 122 (253)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHH
Confidence 4799999999998876 567999999999999988765544321 1369999999 899999999999
Q ss_pred HCCCCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHH
Q 001912 265 WLPFCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAV 339 (997)
Q Consensus 265 ~~p~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al 339 (997)
+..... ..+....|..... ..+....+|+|+|++.+...... +.-..+++||+||||++.+.. .......+
T Consensus 123 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~---~~~~~~~i 198 (253)
T 1wrb_A 123 FSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG---FEPQIRKI 198 (253)
T ss_dssp HHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT---CHHHHHHH
T ss_pred HhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc---hHHHHHHH
Confidence 976432 2334444443322 12234679999999999775443 222467899999999986432 12233333
Q ss_pred HHHHh--h--cCcEEEEeccCC
Q 001912 340 LDVAA--K--VKRIVLLSGTPS 357 (997)
Q Consensus 340 ~~l~~--~--~~~~llLTGTPi 357 (997)
..... . ..+++++||||-
T Consensus 199 ~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 199 IEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHSSCCCCGGGCEEEEEESSCC
T ss_pred HhhccCCCCCCcEEEEEEEeCC
Confidence 33110 1 345899999974
No 83
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=146.73 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=105.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh----------hCCcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI----------SAGSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~----------~~gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
..++|||.+++..++. |.++|+..+||+|||+.++..+.... ....+|||+|+ .|..||.+++.++..
T Consensus 41 ~~~~~~Q~~~i~~~~~-~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 119 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ-GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY 119 (228)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4799999999988775 67899999999999998776544322 23458999999 899999999999863
Q ss_pred CCCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHH
Q 001912 268 FCLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDV 342 (997)
Q Consensus 268 ~~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l 342 (997)
.. ..+....|..... ..+....+|+|+|++.+...... +.-.++++||+||||++.+.. .......+...
T Consensus 120 ~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~---~~~~~~~i~~~ 194 (228)
T 3iuy_A 120 KG--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME---FEPQIRKILLD 194 (228)
T ss_dssp TT--CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT---CHHHHHHHHHH
T ss_pred cC--ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc---hHHHHHHHHHh
Confidence 22 2333343332221 22334679999999999775432 222468999999999986432 23344555554
Q ss_pred HhhcCcEEEEeccC
Q 001912 343 AAKVKRIVLLSGTP 356 (997)
Q Consensus 343 ~~~~~~~llLTGTP 356 (997)
.....+++++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 44456789999995
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.48 E-value=9.2e-14 Score=152.84 Aligned_cols=118 Identities=14% Similarity=0.338 Sum_probs=99.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEecC
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLEL 609 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~ 609 (997)
+.++|||++....++.|.+.|...|+.+..+||+++..+|..+++.|+ ++..+| |++|.++++|||++++++||++|+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~-~g~~~v-LVaT~va~~Gidi~~v~~VI~~d~ 105 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR-QGEVRV-LVATDVAARGLDIPQVDLVVHYRM 105 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH-HTSCCE-EEECSTTTCSTTCCCCSEEEESSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh-cCCceE-EEEechhhcCccccceeEEEEcCC
Confidence 679999999999999999999999999999999999999999999999 667888 899999999999999999999999
Q ss_pred CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHHH
Q 001912 610 PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLNK 653 (997)
Q Consensus 610 ~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~~ 653 (997)
||++..+.|++||++|.|+.. .+|.|+... |...+..+.+
T Consensus 106 p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~--e~~~~~~ie~ 145 (300)
T 3i32_A 106 PDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALER 145 (300)
T ss_dssp CSSTTHHHHHHTCCC-----C--EEEEEECSS--THHHHHHHHH
T ss_pred CCCHHHHHHHccCcCcCCCCc--eEEEEeChH--HHHHHHHHHH
Confidence 999999999999999999764 455555554 3344444433
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.4e-13 Score=146.05 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=109.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--------hCCcEEEEeCc-chHHHHHHHHHHHCCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--------SAGSILVVCPA-ILRLSWAEELERWLPFC 269 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--------~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~ 269 (997)
..|+|+|.+++..++. +.++|+..++|+|||+.++..+.... ....+|||+|+ .|+.||.+++.+++...
T Consensus 75 ~~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 153 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE-GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH 153 (262)
T ss_dssp CBCCHHHHHHHHHHHH-TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHhC-CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4699999999988776 56789999999999999776544322 24469999999 89999999999998654
Q ss_pred CCceEEEEccCCCCcc---cccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 270 LPADIHLVFGHRNNPV---HLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 270 ~~~~i~~~~g~~~~~~---~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
. ..+....|...... .+....+|+|+|++.+...... +.-.++++||+||||++-... -......+....
T Consensus 154 ~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~---~~~~l~~i~~~~ 229 (262)
T 3ly5_A 154 V-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG---FEEELKQIIKLL 229 (262)
T ss_dssp C-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT---CHHHHHHHHHHS
T ss_pred C-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhh---HHHHHHHHHHhC
Confidence 3 23444444433221 1223578999999998765443 222468999999999986432 233345555554
Q ss_pred hhcCcEEEEeccCC
Q 001912 344 AKVKRIVLLSGTPS 357 (997)
Q Consensus 344 ~~~~~~llLTGTPi 357 (997)
....++++||||+-
T Consensus 230 ~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 230 PTRRQTMLFSATQT 243 (262)
T ss_dssp CSSSEEEEECSSCC
T ss_pred CCCCeEEEEEecCC
Confidence 44567899999974
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.46 E-value=4.2e-13 Score=143.67 Aligned_cols=156 Identities=20% Similarity=0.180 Sum_probs=103.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----CC-cEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----AG-SILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..++|||.+++..++. |.++|+..+||+|||+.++..+..... .+ .+|||+|+ .|+.||.+++.++..... .
T Consensus 50 ~~~~~~Q~~~i~~~~~-~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~ 127 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG-F 127 (245)
T ss_dssp CSCCHHHHHHHHHHHT-TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC-C
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC-c
Confidence 3699999999988776 667999999999999997665544332 22 59999999 899999999999976532 2
Q ss_pred eEEEEccCCC----CcccccCCCeEEEEehhHHHHHHHh----hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH-
Q 001912 273 DIHLVFGHRN----NPVHLTRFPRVVVISYTMLHRLRKS----MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA- 343 (997)
Q Consensus 273 ~i~~~~g~~~----~~~~~~~~~~VvItTy~~l~~~~~~----l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~- 343 (997)
.+....+... .........+|+|+|++.+...... +.-.++++||+||||++-.............+....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~ 207 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC
Confidence 2333322111 1112234678999999999775543 223468999999999985422111122222222211
Q ss_pred hhcCcEEEEeccC
Q 001912 344 AKVKRIVLLSGTP 356 (997)
Q Consensus 344 ~~~~~~llLTGTP 356 (997)
....++++||||+
T Consensus 208 ~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 208 SHKVRRAMFSATF 220 (245)
T ss_dssp CTTCEEEEEESSC
T ss_pred CCCcEEEEEeccC
Confidence 1245789999998
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.42 E-value=4.4e-13 Score=143.29 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=106.3
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh---------CCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS---------AGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~---------~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
..++|||.+++..++. |.++|+..++|+|||+.++..+..... ...+|||+|+ .|..||.+++.++...
T Consensus 50 ~~~~~~Q~~~i~~~~~-g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 128 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS-GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128 (242)
T ss_dssp CSCCHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 4699999999988776 678999999999999997765544322 3358999999 8999999999998654
Q ss_pred CCCceEEEEccCCCCc---ccccCCCeEEEEehhHHHHHHHh--hhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 269 CLPADIHLVFGHRNNP---VHLTRFPRVVVISYTMLHRLRKS--MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 269 ~~~~~i~~~~g~~~~~---~~~~~~~~VvItTy~~l~~~~~~--l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
... .+....|..... ..+....+|+|+|++.+...... +.-.++++||+||||++-... ....+..+....
T Consensus 129 ~~~-~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~---~~~~~~~i~~~~ 204 (242)
T 3fe2_A 129 CRL-KSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG---FEPQIRKIVDQI 204 (242)
T ss_dssp TTC-CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT---CHHHHHHHHTTS
T ss_pred cCc-eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC---cHHHHHHHHHhC
Confidence 322 344444433221 11223578999999999775442 223478899999999986422 233344444443
Q ss_pred hhcCcEEEEeccC
Q 001912 344 AKVKRIVLLSGTP 356 (997)
Q Consensus 344 ~~~~~~llLTGTP 356 (997)
....+++++|||+
T Consensus 205 ~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 205 RPDRQTLMWSATW 217 (242)
T ss_dssp CSSCEEEEEESCC
T ss_pred CccceEEEEEeec
Confidence 3446789999996
No 88
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.38 E-value=3.4e-12 Score=140.92 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=109.4
Q ss_pred ccChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHH-HHhhC--C-cEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 199 DVILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAA-CFISA--G-SILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~-~~~~~--g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
..++|+|..++..++.. +..+|+..++|+|||+..+..+. .+... + .+|||+|+ .|..|+.+.+.++.......
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~ 192 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCc
Confidence 47899999999888864 36799999999999998764433 33222 2 49999999 89999999999987654444
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHh---hhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKS---MIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRI 349 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~---l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~ 349 (997)
.+....+............+|+|+|++.+...... +.-.++.+||+||||++-... ........+........++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~--~~~~~~~~i~~~~~~~~q~ 270 (300)
T 3fmo_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ--GHQDQSIRIQRMLPRNCQM 270 (300)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHST--THHHHHHHHHTTSCTTCEE
T ss_pred EEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhcc--CcHHHHHHHHHhCCCCCEE
Confidence 55555554433333344678999999998776532 223578999999999985311 1222333444433344568
Q ss_pred EEEeccCC
Q 001912 350 VLLSGTPS 357 (997)
Q Consensus 350 llLTGTPi 357 (997)
+++|||+-
T Consensus 271 i~~SAT~~ 278 (300)
T 3fmo_B 271 LLFSATFE 278 (300)
T ss_dssp EEEESCCC
T ss_pred EEEeccCC
Confidence 99999974
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.17 E-value=1.3e-09 Score=131.42 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=92.6
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHH-HHhhCCcEEEEeCc-chHHH---HHHHHHHHCCCCCCceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAA-CFISAGSILVVCPA-ILRLS---WAEELERWLPFCLPADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~-~~~~~gp~LIV~P~-sL~~q---W~~Ei~k~~p~~~~~~i 274 (997)
.++|-|..|+--++. |. |....||.|||+.+...+. ..+....++||+|+ .|..| |...+.++++ ..+
T Consensus 79 ~Pt~VQ~~~ip~Llq-G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lG----Lsv 151 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE-GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLG----LSV 151 (997)
T ss_dssp CCCHHHHHHHHHHHT-TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTT----CCE
T ss_pred CCcHHHHhhcccccC-Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcC----CeE
Confidence 678999999977765 44 8888999999998865553 33444569999999 66666 5555555443 234
Q ss_pred EEEccCCCC-cccccCCCeEEEEehhHHH-HH-HHh-------hhhc---cccEEEeccccccccCCCCCcHHHHHHHHH
Q 001912 275 HLVFGHRNN-PVHLTRFPRVVVISYTMLH-RL-RKS-------MIEQ---DWALLIVDESHHVRCSKRTSEPEEVKAVLD 341 (997)
Q Consensus 275 ~~~~g~~~~-~~~~~~~~~VvItTy~~l~-~~-~~~-------l~~~---~~~~VIvDEaH~iKN~~~~~~s~~~~al~~ 341 (997)
.++.|+... ........+|++.|...+. .. .+. +... +..++||||+|.+--
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi--------------- 216 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI--------------- 216 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT---------------
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH---------------
Confidence 444443321 1112225799999999884 21 121 2223 688999999998641
Q ss_pred HHhhcCcEEEEeccCCCCChhHHHHHHH
Q 001912 342 VAAKVKRIVLLSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 342 l~~~~~~~llLTGTPi~n~~~El~~ll~ 369 (997)
..+..-+.+|| |++.. ..+|..++
T Consensus 217 --DeartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 217 --DEARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp --SSTTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred --hCCCCCeeeeC-CCccc-hHHHHHHH
Confidence 11222389999 88766 55555544
No 90
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.99 E-value=2e-09 Score=131.29 Aligned_cols=110 Identities=18% Similarity=0.329 Sum_probs=98.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEEEEe
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFL 607 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~ 607 (997)
..+.++|||+.....++.|.+.|...|+++..+||+++..+|.++++.|+ .+.+.| |++|.+++.|+|++.+++||++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~-~g~~~V-LVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR-LGKYDV-LVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH-HTSCSE-EEESCCCSTTCCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHh-cCCeEE-EEecchhhCCcccCCCCEEEEe
Confidence 45789999999999999999999999999999999999999999999998 577887 8999999999999999999999
Q ss_pred cC-----CCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCC
Q 001912 608 EL-----PQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDT 642 (997)
Q Consensus 608 D~-----~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gT 642 (997)
|. ++++..+.|++||++|.+ .-.++.|+...+
T Consensus 521 d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 521 DADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp TTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred CcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 98 899999999999999962 334555666654
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.5e-08 Score=107.52 Aligned_cols=150 Identities=22% Similarity=0.154 Sum_probs=94.5
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH-HhhC-----CcEEEEeCc-chHHHHHHHHHHHCCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC-FISA-----GSILVVCPA-ILRLSWAEELERWLPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~-~~~~-----gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~ 272 (997)
.++++|.+++..+.. |..+++.-++|+|||.+...++.. .... ..+++++|+ .+..|..+.+.+.+......
T Consensus 61 p~~~~q~~~i~~i~~-g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQ-NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhc-CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 578999999987765 667889999999999766544432 2222 258999999 67778888887766533222
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHH-HHHHHHHh--hcCcE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEV-KAVLDVAA--KVKRI 349 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~-~al~~l~~--~~~~~ 349 (997)
.+.... ...........+|+|+|.+.+...... .-.++++||+||||..- ...... ..+..+.. ...++
T Consensus 140 ~~g~~~--~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~-----~~~~~~~~~l~~i~~~~~~~~~ 211 (235)
T 3llm_A 140 SCGYSV--RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERD-----INTDFLLVVLRDVVQAYPEVRI 211 (235)
T ss_dssp SEEEEE--TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCC-----HHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEEee--chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCC-----cchHHHHHHHHHHHhhCCCCeE
Confidence 222111 111111113578999999988776543 23678999999999730 011111 12223322 23468
Q ss_pred EEEeccCCC
Q 001912 350 VLLSGTPSL 358 (997)
Q Consensus 350 llLTGTPi~ 358 (997)
+++|||+-.
T Consensus 212 il~SAT~~~ 220 (235)
T 3llm_A 212 VLMSATIDT 220 (235)
T ss_dssp EEEECSSCC
T ss_pred EEEecCCCH
Confidence 999999753
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.62 E-value=6.5e-08 Score=115.83 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=86.3
Q ss_pred cChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 200 VILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
.+||+|.+.+.. .+..|+.+|+..+||+|||+..+..+.. ...+++|++|+ .+..||.+++.++.... ...+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--~~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~ 79 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--VKPKVLFVVRTHNEFYPIYRDLTKIREKR-NITFS 79 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--HCSEEEEEESSGGGHHHHHHHHTTCCCSS-CCCEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--CCCeEEEEcCCHHHHHHHHHHHHHHhhhc-CccEE
Confidence 579999997764 4556778899999999999988766554 56789999999 89999999998874432 22233
Q ss_pred EEccCCCC--------------------------------c----------------------ccccCCCeEEEEehhHH
Q 001912 276 LVFGHRNN--------------------------------P----------------------VHLTRFPRVVVISYTML 301 (997)
Q Consensus 276 ~~~g~~~~--------------------------------~----------------------~~~~~~~~VvItTy~~l 301 (997)
.+.|+..- . .......+|||+||..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 33332110 0 00112568999999999
Q ss_pred HHHHHh--hh-hccccEEEecccccccc
Q 001912 302 HRLRKS--MI-EQDWALLIVDESHHVRC 326 (997)
Q Consensus 302 ~~~~~~--l~-~~~~~~VIvDEaH~iKN 326 (997)
...... +. .....+|||||||++-+
T Consensus 160 ~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 765321 11 13567899999999975
No 93
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.58 E-value=1.4e-07 Score=112.45 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=49.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEE-EeccccccccCccc----ccE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAI-IGITAGGVGLDFSS----AQN 603 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlL-lSt~agg~GLNL~~----A~~ 603 (997)
.+.++|||+.....++.+.+.+.. +. +.+.|.. .+|.++++.|+. +. .|++ +.+....+|||+++ +..
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-GK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-SC-CEEEEEC---------------CEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-CC-eEEEEEecCceecceecCCCcccccE
Confidence 466899999999999999888864 33 4566664 568899999985 33 3533 37789999999997 788
Q ss_pred EEEecCCCCcc
Q 001912 604 VVFLELPQSPS 614 (997)
Q Consensus 604 VI~~D~~wnp~ 614 (997)
||++.+|+-+.
T Consensus 456 Vii~~lPf~~~ 466 (540)
T 2vl7_A 456 LVLAGLPYPNV 466 (540)
T ss_dssp EEEESCCCCCT
T ss_pred EEEECCCCCCC
Confidence 99999986544
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.07 E-value=4.9e-06 Score=100.57 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=52.9
Q ss_pred cChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCc-chHHHHHHHHHHHC
Q 001912 200 VILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
.+||+|++.+.. .+..|+.+|+..+||+|||+..+..+..+. ...+++|++|+ ++..|+.+|+.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 469999999874 455688899999999999999876544332 35689999999 89999999988763
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.40 E-value=0.00054 Score=83.37 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=54.4
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc-chHHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
..|=+.|++||..++....=.||.-+.|+|||.+.+.++..+.. ..++||++|+ ..+.+..+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 46889999999999876556788999999999999888777665 4579999999 6677777666654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.05 E-value=0.0021 Score=77.76 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=91.0
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|-+.|+++|..++. ++-.+|.-+.|+|||.++..++..+.. ..++||++|+ ..+.+-.+.+.+... ..+.
T Consensus 179 ~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~----~~~R 253 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL----KVVR 253 (624)
T ss_dssp CCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTC----CEEE
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCC----eEEe
Confidence 4688999999998886 455788889999999999888877654 5689999999 555666655554311 0111
Q ss_pred EEccCCC--------------------------------Ccc-------------------cccCCCeEEEEehhHHHHH
Q 001912 276 LVFGHRN--------------------------------NPV-------------------HLTRFPRVVVISYTMLHRL 304 (997)
Q Consensus 276 ~~~g~~~--------------------------------~~~-------------------~~~~~~~VvItTy~~l~~~ 304 (997)
+....+. ... ......+||++|...+..
T Consensus 254 ~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~- 332 (624)
T 2gk6_A 254 LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD- 332 (624)
T ss_dssp CCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGC-
T ss_pred eccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcc-
Confidence 1100000 000 001245678887765532
Q ss_pred HHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCC
Q 001912 305 RKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359 (997)
Q Consensus 305 ~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n 359 (997)
..+....|++||||||...- .. ..+..+... ..+++|-|=|-|-
T Consensus 333 -~~l~~~~fd~viIDEAsQ~~------e~---~~li~l~~~-~~~~ilvGD~~QL 376 (624)
T 2gk6_A 333 -PRLAKMQFRSILIDESTQAT------EP---ECMVPVVLG-AKQLILVGDHCQL 376 (624)
T ss_dssp -GGGTTCCCSEEEETTGGGSC------HH---HHHHHHTTT-BSEEEEEECTTSC
T ss_pred -hhhhcCCCCEEEEecccccC------cH---HHHHHHHhc-CCeEEEecChhcc
Confidence 23445689999999997652 11 234555433 3468999998764
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.00 E-value=0.0022 Score=74.64 Aligned_cols=131 Identities=17% Similarity=0.097 Sum_probs=80.3
Q ss_pred hccChhhHHHHHHHHHhc----CCCeEEEcCCCchHHHHHHHHHHHHhhCC--cEEEEeCcchHHHHHHH--------HH
Q 001912 198 LDVILPFQLEGVRFGLRR----GGRCLIADEMGLGKTLQAIAIAACFISAG--SILVVCPAILRLSWAEE--------LE 263 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~----~g~~ILaDemGLGKTlqaial~~~~~~~g--p~LIV~P~sL~~qW~~E--------i~ 263 (997)
...|-+-|+++|..++.. .+..+|--..|+|||..+.+++..+...+ .+++++|+.....-..+ +.
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h 102 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIH 102 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHH
Confidence 347889999999976442 44788888999999999988888877655 59999999554322221 22
Q ss_pred HHCCCCCCceEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHH
Q 001912 264 RWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVA 343 (997)
Q Consensus 264 k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~ 343 (997)
+++. ...... .....+.... .-....+++|||||+|.+- ......+....
T Consensus 103 ~~~~------~~~~~~---------~~~~~~~~~~--------~~~~~~~~~iiiDE~~~~~-------~~~~~~l~~~~ 152 (459)
T 3upu_A 103 SILK------INPVTY---------EENVLFEQKE--------VPDLAKCRVLICDEVSMYD-------RKLFKILLSTI 152 (459)
T ss_dssp HHHT------EEEEEC---------SSCEEEEECS--------CCCCSSCSEEEESCGGGCC-------HHHHHHHHHHS
T ss_pred HHhc------cCcccc---------cccchhcccc--------cccccCCCEEEEECchhCC-------HHHHHHHHHhc
Confidence 2211 000000 0011111110 0112468999999999872 34455555554
Q ss_pred hhcCcEEEEeccCCCC
Q 001912 344 AKVKRIVLLSGTPSLS 359 (997)
Q Consensus 344 ~~~~~~llLTGTPi~n 359 (997)
. ...++++.|-|-|.
T Consensus 153 ~-~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 153 P-PWCTIIGIGDNKQI 167 (459)
T ss_dssp C-TTCEEEEEECTTSC
T ss_pred c-CCCEEEEECCHHHc
Confidence 2 45579999988764
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.00 E-value=0.0035 Score=74.75 Aligned_cols=131 Identities=17% Similarity=0.102 Sum_probs=80.0
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEE
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELERWLPFCLPADIHL 276 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~ 276 (997)
...|-+.|++++..++. ++.++|.-..|+|||.++.+++..+... .++++++|+........|... . ....++-
T Consensus 187 ~~~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~---~-~a~Tih~ 261 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTG---R-TASTVHR 261 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT---S-CEEEHHH
T ss_pred cCCCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhc---c-cHHHHHH
Confidence 34688999999998886 5667888899999999988888776554 479999999666555444221 0 0000000
Q ss_pred EccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 277 VFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 277 ~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
..+.... .+.. ..-....+++|||||+|++- ......+.... ....+++|.|-|
T Consensus 262 ll~~~~~--~~~~----------------~~~~~~~~dvlIIDEasml~-------~~~~~~Ll~~~-~~~~~lilvGD~ 315 (574)
T 3e1s_A 262 LLGYGPQ--GFRH----------------NHLEPAPYDLLIVDEVSMMG-------DALMLSLLAAV-PPGARVLLVGDT 315 (574)
T ss_dssp HTTEETT--EESC----------------SSSSCCSCSEEEECCGGGCC-------HHHHHHHHTTS-CTTCEEEEEECT
T ss_pred HHcCCcc--hhhh----------------hhcccccCCEEEEcCccCCC-------HHHHHHHHHhC-cCCCEEEEEecc
Confidence 0000000 0000 00012468999999999983 23344444332 234579999999
Q ss_pred CCC
Q 001912 357 SLS 359 (997)
Q Consensus 357 i~n 359 (997)
-|.
T Consensus 316 ~QL 318 (574)
T 3e1s_A 316 DQL 318 (574)
T ss_dssp TSC
T ss_pred ccc
Confidence 874
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.003 Score=78.35 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=91.2
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAGSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
..|-+.|+++|..++. ++-.+|--..|+|||.++..++..+. ...++||++|+ ..+.+-.+.+.+... ..+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~----~ilR 433 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGL----KVVR 433 (802)
T ss_dssp CCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTC----CEEE
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCc----cEEe
Confidence 4688999999999876 44578888999999999888777655 36789999999 555666666665321 0111
Q ss_pred EEccCCCC----------------------------------c----------------ccccCCCeEEEEehhHHHHHH
Q 001912 276 LVFGHRNN----------------------------------P----------------VHLTRFPRVVVISYTMLHRLR 305 (997)
Q Consensus 276 ~~~g~~~~----------------------------------~----------------~~~~~~~~VvItTy~~l~~~~ 305 (997)
+....... . .......+||++|...+..
T Consensus 434 ~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~-- 511 (802)
T 2xzl_A 434 LTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD-- 511 (802)
T ss_dssp CCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC--
T ss_pred ecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh--
Confidence 11000000 0 0001245788888766542
Q ss_pred HhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCC
Q 001912 306 KSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359 (997)
Q Consensus 306 ~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n 359 (997)
..+.. .|++||||||+.+. . ...+..+... ..+++|-|=|-|-
T Consensus 512 ~~L~~-~fd~viIDEA~q~~------e---~~~li~l~~~-~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 KRLDT-KFRTVLIDESTQAS------E---PECLIPIVKG-AKQVILVGDHQQL 554 (802)
T ss_dssp TTCCS-CCSEEEETTGGGSC------H---HHHHHHHTTT-BSEEEEEECTTSC
T ss_pred HHHhc-cCCEEEEECccccc------h---HHHHHHHHhC-CCEEEEEeCcccc
Confidence 12333 89999999998772 1 2245555433 3478999998764
No 100
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.76 E-value=0.0037 Score=75.29 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh----C-CcEEEEeCc-chHHHHHHHHHHHCCCCCCceEE
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS----A-GSILVVCPA-ILRLSWAEELERWLPFCLPADIH 275 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~----~-gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~ 275 (997)
-+.|+.++..++. ++-+++.-..|+|||.++..++..+.. . .++++++|+ ....+-.+.+..+...+.. ...
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l-~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL-TDE 228 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC-CSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC-CHH
Confidence 5789999988885 566888899999999877766665542 2 379999999 4555555544443211100 000
Q ss_pred EEccCCCCcccccCCCeEEEEehhH--HHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEe
Q 001912 276 LVFGHRNNPVHLTRFPRVVVISYTM--LHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLS 353 (997)
Q Consensus 276 ~~~g~~~~~~~~~~~~~VvItTy~~--l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLT 353 (997)
...+....... -+.++-.+... +... ......+++||||||+++. ......+.... ....+++|-
T Consensus 229 ~~~~~~~~~~T---ih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~-------~~~~~~Ll~~l-~~~~~liLv 295 (608)
T 1w36_D 229 QKKRIPEDAST---LHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID-------LPMMSRLIDAL-PDHARVIFL 295 (608)
T ss_dssp CCCSCSCCCBT---TTSCC-----------C--TTSCCSCSEEEECSGGGCB-------HHHHHHHHHTC-CTTCEEEEE
T ss_pred HHhccchhhhh---hHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC-------HHHHHHHHHhC-CCCCEEEEE
Confidence 00000000000 01111111111 1110 1112378999999999873 22334444433 234578999
Q ss_pred ccCCCCCh
Q 001912 354 GTPSLSRP 361 (997)
Q Consensus 354 GTPi~n~~ 361 (997)
|-|-|-.+
T Consensus 296 GD~~QL~~ 303 (608)
T 1w36_D 296 GDRDQLAS 303 (608)
T ss_dssp ECTTSGGG
T ss_pred cchhhcCC
Confidence 98876543
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.75 E-value=0.015 Score=65.35 Aligned_cols=154 Identities=11% Similarity=0.127 Sum_probs=90.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hC-CcEEEEeCc-chHHHHHHHHHHH---CCCCCCc
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SA-GSILVVCPA-ILRLSWAEELERW---LPFCLPA 272 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~-gp~LIV~P~-sL~~qW~~Ei~k~---~p~~~~~ 272 (997)
.|.|||+..+..+.. ...+++.-.-+.|||..+.+++.+.. .. ..+++++|+ .....+.+++..+ .|.+...
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~ 241 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSC
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhh
Confidence 789999999886643 23467788899999998776655422 22 368999998 3444344666665 3432111
Q ss_pred eEEEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh-cCcEEE
Q 001912 273 DIHLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK-VKRIVL 351 (997)
Q Consensus 273 ~i~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~-~~~~ll 351 (997)
.+. ... .....+.....|.+.+- ....+.....+++|+||+|.+++ ....+.++...... ...+++
T Consensus 242 ~~~--~~~-~~~I~f~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~-----~~el~~al~~~ls~~~~~kii 308 (385)
T 2o0j_A 242 GIV--EWN-KGSIELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPN-----FHDSWLAIQPVISSGRRSKII 308 (385)
T ss_dssp CEE--EEC-SSEEEETTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTT-----HHHHHHHHHHHHHSTTCCEEE
T ss_pred hhc--cCC-ccEEEeCCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCC-----CHHHHHHHHHHhhcCCCCcEE
Confidence 111 111 11111222334444432 33455667899999999999963 13445555544332 346788
Q ss_pred EeccCCCCChhHHHHHHH
Q 001912 352 LSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 352 LTGTPi~n~~~El~~ll~ 369 (997)
+++||-..+ .+|.+..
T Consensus 309 iiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 309 ITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp EEECCCSSS--HHHHHHH
T ss_pred EEeCCCCch--hHHHHHH
Confidence 899996442 4444443
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.75 E-value=0.0035 Score=77.66 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=50.9
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCc-chHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPA-ILRLSWAEELER 264 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~-sL~~qW~~Ei~k 264 (997)
..|-+.|+++|..++. ++-.+|.-..|+|||.++..++..+.. ..++||++|+ ..+.+-.+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4688999999998876 445788889999999999888877664 4689999999 455555555544
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.74 E-value=0.061 Score=65.14 Aligned_cols=67 Identities=22% Similarity=0.171 Sum_probs=51.3
Q ss_pred hccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-----CcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 198 LDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 198 ~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-----gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
...|-+-|+++|. ..+|.+++--..|+|||.+.+.-+.++... ..+|+|+++ ....+..+.+.+.++
T Consensus 7 ~~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 7 LDSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp HTTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hhcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4578899999997 235667777789999999999877777654 369999998 566667777776644
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.29 E-value=0.035 Score=66.54 Aligned_cols=148 Identities=9% Similarity=0.108 Sum_probs=86.4
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHh--hCC-cEEEEeCc-chHHHHHHHHHHHCCCCCC-ceE
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFI--SAG-SILVVCPA-ILRLSWAEELERWLPFCLP-ADI 274 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~--~~g-p~LIV~P~-sL~~qW~~Ei~k~~p~~~~-~~i 274 (997)
.|.|||+..+..+.. ...+++.-.-|.|||..+.+++.+.. ..+ .++++.|+ .........+..++..... ...
T Consensus 163 ~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 689999998876632 34577888899999998765544332 233 68999999 4554555677776533211 000
Q ss_pred EEEccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhh-cCcEEEEe
Q 001912 275 HLVFGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAK-VKRIVLLS 353 (997)
Q Consensus 275 ~~~~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~-~~~~llLT 353 (997)
....... ....+.....|.+.+- ....+.....+++|+||+|.+++. ...+.++...... ...+++++
T Consensus 242 ~~~~~~~-~~i~~~nGs~i~~~s~-----~~~~lrG~~~~~~iiDE~~~~~~~-----~~l~~~~~~~l~~~~~~~ii~i 310 (592)
T 3cpe_A 242 GIVEWNK-GSIELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-----HDSWLAIQPVISSGRRSKIIIT 310 (592)
T ss_dssp CEEEECS-SEEEETTSCEEEEEEC-----CHHHHHHSCCSEEEEETGGGCTTH-----HHHHHHHHHHHSSSSCCEEEEE
T ss_pred ccccCCc-cEEEecCCCEEEEEeC-----CCCCccCCCcceEEEehhccCCch-----hHHHHHHHHHhccCCCceEEEE
Confidence 0010011 1111222333443332 233455568999999999998631 2345555544322 24678999
Q ss_pred ccCCCC
Q 001912 354 GTPSLS 359 (997)
Q Consensus 354 GTPi~n 359 (997)
+||-..
T Consensus 311 sTP~~~ 316 (592)
T 3cpe_A 311 TTPNGL 316 (592)
T ss_dssp ECCCTT
T ss_pred eCCCCc
Confidence 999544
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.83 E-value=0.029 Score=58.29 Aligned_cols=111 Identities=21% Similarity=0.131 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
|+-.++.-+||.|||..++.++..+...| +++++.|.---. .+ ...... .|- ....+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~-~~i~sr---------lG~--------~~~~~~ 70 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SI-RNIQSR---------TGT--------SLPSVE 70 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GC-SSCCCC---------CCC--------SSCCEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HH-HHHHHh---------cCC--------Cccccc
Confidence 33456788999999999999988877655 788887763100 00 000000 010 011223
Q ss_pred EEehhHHHHHHH-hhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEecc
Q 001912 295 VISYTMLHRLRK-SMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGT 355 (997)
Q Consensus 295 ItTy~~l~~~~~-~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGT 355 (997)
+.+.+.+..... .+...++++|||||+|.+. ......+..+.. ..-.++++|-
T Consensus 71 ~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~-------~~~ve~l~~L~~-~gi~Vil~Gl 124 (223)
T 2b8t_A 71 VESAPEILNYIMSNSFNDETKVIGIDEVQFFD-------DRICEVANILAE-NGFVVIISGL 124 (223)
T ss_dssp ESSTHHHHHHHHSTTSCTTCCEEEECSGGGSC-------THHHHHHHHHHH-TTCEEEEECC
T ss_pred cCCHHHHHHHHHHHhhCCCCCEEEEecCccCc-------HHHHHHHHHHHh-CCCeEEEEec
Confidence 344433333222 2223469999999999873 123444555443 3556888986
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.82 E-value=0.019 Score=58.97 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=27.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
++.-+||.|||..++..+..+...| ++||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3677899999999999988876655 68999887
No 107
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.015 Score=69.07 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=50.8
Q ss_pred cChhhHHHHHHH---HHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHH
Q 001912 200 VILPFQLEGVRF---GLRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 200 ~L~pyQ~~gV~~---~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
.+||+|.+.+.- .+..++.+|+..+||+|||+..+..+. ....+++|++|+ ++..||.+++.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~--~~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGM--QLKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHH--HHTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHH--hCCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 689999998754 345677899999999999987665543 346799999999 8999999999874
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.032 Score=56.47 Aligned_cols=34 Identities=26% Similarity=0.130 Sum_probs=27.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
.++.-+||+|||..++.++..+...| +++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45677899999999999888876554 68999887
No 109
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.42 E-value=0.054 Score=56.08 Aligned_cols=34 Identities=26% Similarity=0.167 Sum_probs=27.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
-++.-+||+|||-.++..+..+...| +++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 35677899999999998888776655 68888887
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.34 E-value=0.019 Score=57.82 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~ 252 (997)
.++.-+||.|||..++.++..+... .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4677889999999999888776654 468888887
No 111
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.04 E-value=0.028 Score=64.06 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=70.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVIS 297 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItT 297 (997)
.++.-..|.|||.....++. ..+.||++|+ .+...|.+.+.+-. .. ....+-+.|
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~----~~~~lVlTpT~~aa~~l~~kl~~~~-------------~~-------~~~~~~V~T 219 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN----FEEDLILVPGRQAAEMIRRRANASG-------------II-------VATKDNVRT 219 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC----TTTCEEEESCHHHHHHHHHHHTTTS-------------CC-------CCCTTTEEE
T ss_pred EEEEcCCCCCHHHHHHHHhc----cCCeEEEeCCHHHHHHHHHHhhhcC-------------cc-------ccccceEEE
Confidence 45677899999998876653 2678999999 78888988774310 00 011234788
Q ss_pred hhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCC
Q 001912 298 YTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLS 359 (997)
Q Consensus 298 y~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n 359 (997)
++.+...........+++|||||+.++- .....++..+. .. .+++|.|=|-|-
T Consensus 220 ~dsfL~~~~~~~~~~~d~liiDE~sm~~-------~~~l~~l~~~~-~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 220 VDSFLMNYGKGARCQFKRLFIDEGLMLH-------TGCVNFLVEMS-LC-DIAYVYGDTQQI 272 (446)
T ss_dssp HHHHHHTTTSSCCCCCSEEEEETGGGSC-------HHHHHHHHHHT-TC-SEEEEEECTTSC
T ss_pred eHHhhcCCCCCCCCcCCEEEEeCcccCC-------HHHHHHHHHhC-CC-CEEEEecCcccc
Confidence 8876543222111248999999999872 33344454443 23 679999998654
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.47 E-value=0.16 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
.++|.-+.|+|||..|-+++..+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999988887654
No 113
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.24 Score=55.69 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=53.1
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
....|+||.-++|+|||+.|=|++... ..+++.|..+.++..|.-|-.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~--~~~f~~v~~s~l~sk~vGese~~---------------------------- 229 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT--DCKFIRVSGAELVQKYIGEGSRM---------------------------- 229 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH--TCEEEEEEGGGGSCSSTTHHHHH----------------------------
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh--CCCceEEEhHHhhccccchHHHH----------------------------
Confidence 335689999999999999999998874 56777777777766665443331
Q ss_pred EEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 294 VVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 294 vItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
++............+|++||.+.+-.
T Consensus 230 -------vr~lF~~Ar~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 230 -------VRELFVMAREHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp -------HHHHHHHHHHTCSEEEEEESSSCCTT
T ss_pred -------HHHHHHHHHHhCCceEeeecchhhcc
Confidence 12222222345678999999999854
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.08 E-value=0.53 Score=48.12 Aligned_cols=34 Identities=29% Similarity=0.171 Sum_probs=26.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
-++.-+||.|||..++-.+..+...+ +++|+.|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 35667799999988887777666544 68888886
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.06 E-value=0.34 Score=47.51 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
...++|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 446889999999999999888877644
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.54 E-value=0.9 Score=49.52 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=32.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei 262 (997)
..++|.-+.|+|||..+-+++..+.. ..+++.|-...+...+..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHL 84 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
Confidence 46889999999999999888887655 34566655445544444443
No 117
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.46 E-value=0.39 Score=47.21 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
++.++|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356889999999999999888877644
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.45 E-value=1.2 Score=48.90 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHH---hcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 201 ILPFQLEGVRFGL---RRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 201 L~pyQ~~gV~~~l---~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
++|+|.+.++.+. +.|. ..++.-+.|+|||..|.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 5899999887643 3332 3788999999999999999987754
No 119
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.23 E-value=0.22 Score=59.93 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=48.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe-ccccccccCccc--ccEEEE
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG-ITAGGVGLDFSS--AQNVVF 606 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS-t~agg~GLNL~~--A~~VI~ 606 (997)
++.+|||......++.+.+.|. ....- ...+++..+|..++++|+ ++..|++.. .....+|||+++ +..||+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~--~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR--RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT--TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc--cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 4568888888888888887776 23322 444455678999999999 455564433 358999999986 788999
Q ss_pred ecCCC
Q 001912 607 LELPQ 611 (997)
Q Consensus 607 ~D~~w 611 (997)
.-+|+
T Consensus 523 ~~lPf 527 (620)
T 4a15_A 523 AGLPF 527 (620)
T ss_dssp SSCCC
T ss_pred EcCCC
Confidence 88775
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.65 E-value=0.68 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.137 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~ 252 (997)
.++.-+||+|||...+-.+..+... .+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4577889999997777666665554 468888876
No 121
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.36 E-value=0.34 Score=53.93 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
..++||.-+.|+|||..|-+++..+ ..+++.|-..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSS 118 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH--TCEEEEEEHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh--CCCEEEeeHH
Confidence 3468999999999999999988875 3455555433
No 122
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.32 E-value=0.6 Score=52.52 Aligned_cols=39 Identities=28% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~ 256 (997)
..++||.-+.|+|||..|-+++... ..+++.|.+..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~--~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES--NATFFNISAASLTS 186 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT--TCEEEEECSCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh--cCcEEEeeHHHhhc
Confidence 3578999999999999998887653 45666665555443
No 123
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.24 E-value=0.23 Score=47.37 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=21.1
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~ 239 (997)
...+..++|.-|.|+|||..|-++...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 344667999999999999988766543
No 124
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.22 E-value=0.45 Score=50.80 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=26.2
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
..+.+++|.-+.|+|||..+-+++..+ ..+++.|..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~--~~~~~~v~~ 84 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET--NATFIRVVG 84 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT--TCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEEEEeh
Confidence 445678999999999999998887753 344444433
No 125
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.03 E-value=0.43 Score=57.83 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=52.9
Q ss_pred cChhhHHHHHHHHH---hcCC-CeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 200 VILPFQLEGVRFGL---RRGG-RCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l---~~~g-~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
++..+|..++.-+. ..|. ..+|.--+|+|||+.+..++... ..|+|||+|+ .+..||..|+..|+|.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 46779988887543 3343 35566779999999998777643 6799999999 7889999999999875
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.00 E-value=0.33 Score=53.17 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~ 255 (997)
.++||.-+.|+|||..|-+++... ..+++.|....+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~--~~~~~~v~~~~l~ 88 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLV 88 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH--TCEEEEEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH--CCCEEEEchHHHh
Confidence 468999999999999999888764 4555555544443
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.37 E-value=0.42 Score=52.40 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
.+++|.-+.|+|||..|-+++..+ ...+++.|...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-~~~~~~~i~~~ 80 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSS 80 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-TSCEEEEEECC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-CCCcEEEEEhH
Confidence 468899999999999999988764 23344444443
No 128
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=1 Score=50.99 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..|+||.-+.|+|||+.|-|++... ..+++.|..+.++..|.-|-.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~--~~~fi~v~~s~l~sk~vGesek------------------------------- 262 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT--SATFLRIVGSELIQKYLGDGPR------------------------------- 262 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH--TCEEEEEESGGGCCSSSSHHHH-------------------------------
T ss_pred CCCCceECCCCchHHHHHHHHHHHh--CCCEEEEEHHHhhhccCchHHH-------------------------------
Confidence 4578999999999999999999874 4577777776665555333222
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
.++............+|++||.+.+-.
T Consensus 263 ----~ir~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 263 ----LCRQIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp ----HHHHHHHHHHHTCSEEEEEEEESSSSC
T ss_pred ----HHHHHHHHHHhcCCcEEEEehhhhhcc
Confidence 122222223345678999999998854
No 129
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.04 E-value=0.98 Score=51.49 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..|+||.-+.|+|||+.|-|++..+ ..+++.|..+.++..|..|-.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~--~~~~~~v~~s~l~sk~~Gese~------------------------------- 261 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI--GANFIFSPASGIVDKYIGESAR------------------------------- 261 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH--TCEEEEEEGGGTCCSSSSHHHH-------------------------------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh--CCCEEEEehhhhccccchHHHH-------------------------------
Confidence 4578999999999999999998875 4567777666665444333222
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
.+.............+|++||.+.+..
T Consensus 262 ----~ir~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 262 ----IIREMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp ----HHHHHHHHHHHSCSEEEEEECCCSSSC
T ss_pred ----HHHHHHHHHHhcCCceeeeeccccccc
Confidence 122222223345788999999998853
No 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.99 E-value=1.1 Score=45.40 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=22.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHh-----hCC-cEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFI-----SAG-SILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~-----~~g-p~LIV~P 251 (997)
.++--.+|+|||..|+..+.... ..| +.+.++.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 46777899999999988655432 344 5454554
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.98 E-value=0.49 Score=46.70 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=38.5
Q ss_pred hhHHHHHHHHH--------hcCCCeEEEcCCCchHHHHHHHHHHHHh-hCC-cEEEEeCcchHHHHHH
Q 001912 203 PFQLEGVRFGL--------RRGGRCLIADEMGLGKTLQAIAIAACFI-SAG-SILVVCPAILRLSWAE 260 (997)
Q Consensus 203 pyQ~~gV~~~l--------~~~g~~ILaDemGLGKTlqaial~~~~~-~~g-p~LIV~P~sL~~qW~~ 260 (997)
+.|.+++..+. ..|...+|.-+.|+|||..+-+++..+. ..| .++.+....++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH 84 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 45666666543 2456788889999999999999888775 445 4555544445444443
No 132
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.81 E-value=0.62 Score=53.20 Aligned_cols=77 Identities=23% Similarity=0.210 Sum_probs=51.9
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
+....|+||.-+.|+|||+.|-|++... ..+++.|....++..|.-|-.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~--~~~fi~vs~s~L~sk~vGesek---------------------------- 289 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT--DATFIRVIGSELVQKYVGEGAR---------------------------- 289 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH--TCEEEEEEGGGGCCCSSSHHHH----------------------------
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc--CCCeEEEEhHHhhcccCCHHHH----------------------------
Confidence 3345688999999999999999998864 4567777766665544333222
Q ss_pred EEEEehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 293 VVVISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 293 VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
.++............+|++||.+.+-.
T Consensus 290 -------~ir~lF~~Ar~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 290 -------MVRELFEMARTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp -------HHHHHHHHHHHTCSEEEEEECCTTTSB
T ss_pred -------HHHHHHHHHHhcCCceEeecccccccc
Confidence 122222233345678999999999854
No 133
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.80 E-value=2.2 Score=45.63 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
+.+++|.-++|+|||..|-+++..+ ..+++.|-
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l--~~~~~~i~ 82 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVE 82 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH--TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCCEEEEc
Confidence 5578999999999999998888765 34554443
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.74 E-value=1.5 Score=45.19 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=35.4
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELE 263 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~ 263 (997)
..|.-.+|+-+.|+|||..++.++..... .++++++.-.....+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHH
Confidence 34555778889999999999887766544 568888887654555544444
No 135
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.26 E-value=0.57 Score=52.08 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
..+++|.-+.|+|||..|-+++..+ ..+++.|...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~--~~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS--GATFFSISAS 151 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT--TCEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCeEEEEehH
Confidence 4578899999999999999887753 3455554443
No 136
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.12 E-value=2.2 Score=44.76 Aligned_cols=43 Identities=26% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcch
Q 001912 212 GLRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAIL 254 (997)
Q Consensus 212 ~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL 254 (997)
+...+..++|.-++|+|||..|-+++...... .|++.|-...+
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 34456689999999999999988887655433 45555543443
No 137
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.87 E-value=0.77 Score=52.69 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~ 256 (997)
.++||.-+.|+|||..|-+++..+ ...+++.|....++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSSDLVS 206 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-CSSEEEEECCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-CCCCEEEEeHHHHHh
Confidence 468899999999999999988764 234555555555443
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.45 E-value=4.6 Score=40.93 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=32.4
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCcchHHHHHHHH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~sL~~qW~~Ei 262 (997)
.|.-.+|.-+.|+|||..+..++.... ..++++++.......+....+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHH
Confidence 355567889999999998888775544 467888877554444433333
No 139
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.34 E-value=1.1 Score=51.10 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSW 258 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW 258 (997)
..|+||.-++|+|||..|=|++..+ ..+++.|..+.++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~--~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST--KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH--TCEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCCeEEEecchhhccc
Confidence 4578999999999999999998875 4566666665554443
No 140
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.17 E-value=3.1 Score=49.70 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC---------------CcEEEEeCcchHHH
Q 001912 204 FQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA---------------GSILVVCPAILRLS 257 (997)
Q Consensus 204 yQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~---------------gp~LIV~P~sL~~q 257 (997)
.-++.+.+.+..+..++|.-+.|+|||..+-+++..+... .|.+.++|.....+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 4456777788888899999999999999998887754321 35666777755444
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.82 E-value=1.2 Score=45.75 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
+..++|.-+.|+|||..+-+++..+...+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 55788999999999999988887765443
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.78 E-value=6 Score=39.37 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcC--CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 204 FQLEGVRFGLRRG--GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 204 yQ~~gV~~~l~~~--g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+.+...+..+ +.++|.-+.|+|||..+-+++..+.
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444444433 3589999999999999988877653
No 143
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.62 E-value=1.8 Score=47.79 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=28.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
..++|.-+.|+|||..|-+++..+....|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 368899999999999999999887655576555543
No 144
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=87.52 E-value=0.24 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCcccccccccccccccCCCcccccccccChhhhHhH
Q 001912 901 NDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEY 937 (997)
Q Consensus 901 ~~~plc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~~ 937 (997)
.+...|.+|..+...... ..+-+|||..|+..|
T Consensus 16 ~~~~~C~~CG~~i~~~~~----~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 16 ANLLKCEYCGKYAPAEQF----RGSKRFCSMTCAKRY 48 (49)
T ss_dssp CSEEECTTTCCEEEGGGC----TTTSSSCSHHHHHHH
T ss_pred CCCCcChhccCccccccC----CCCCccCCHHHHhhh
Confidence 344569999998653321 245699999999987
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.80 E-value=1.1 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
++.++|.-+.|+|||..+-+++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 33588999999999999988887653
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.64 E-value=0.73 Score=43.82 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=25.3
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEE
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSIL 247 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~L 247 (997)
...+..++|.-|.|+|||..|-++...... .+|++
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 345668999999999999999887664332 33444
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.57 E-value=2.6 Score=42.12 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
.+++|.-+.|+|||..+-+++......+ ++++|.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5688999999999999998888765544 555443
No 148
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.06 E-value=3.5 Score=44.65 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhcCC--C-eEEEcCCCchHHHHHHHHHHHH
Q 001912 204 FQLEGVRFGLRRGG--R-CLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 204 yQ~~gV~~~l~~~g--~-~ILaDemGLGKTlqaial~~~~ 240 (997)
.....+..++..+. + .|+..+.|+|||..+-+++..+
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 44444544454333 3 4566679999999999887764
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.80 E-value=3.3 Score=41.95 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 203 PFQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
...++.+...+..+. .++|.-+.|+|||..+-+++..+..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555555554443 4789999999999998888776543
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.67 E-value=1 Score=48.58 Aligned_cols=42 Identities=26% Similarity=0.205 Sum_probs=29.8
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRL 256 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~ 256 (997)
+..+.+++|.-+.|+|||..|-+++..+ ..+++.|-...+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLT 87 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT--TCEEEEECHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh--CCCEEEEEhHHHHh
Confidence 3445678999999999999999888764 35555554444443
No 151
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.63 E-value=0.86 Score=47.70 Aligned_cols=36 Identities=31% Similarity=0.241 Sum_probs=26.2
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
...+++|.-+.|+|||..|-+++..+ ..+++.|...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~--~~~~~~~~~~ 73 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA--QVPFLAMAGA 73 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH--TCCEEEEETT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--CCCEEEechH
Confidence 34568899999999999998887754 3455544443
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.62 E-value=3.1 Score=45.97 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=22.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+..++|.-+.|+|||..+-+++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446889999999999999888776543
No 153
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.48 E-value=3.5 Score=45.04 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcC--CCeEEEcCCCchHHHHHHHHHHHHh
Q 001912 205 QLEGVRFGLRRG--GRCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 205 Q~~gV~~~l~~~--g~~ILaDemGLGKTlqaial~~~~~ 241 (997)
.++.+...+..+ +.++|.-+.|+|||..+-+++..+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555555544 4689999999999999988887653
No 154
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.18 E-value=1.1 Score=48.10 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=27.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILR 255 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~ 255 (997)
.+++|.-++|+|||..|-+++..+ ..+++.|....+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l--~~~~i~v~~~~l~ 73 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM--GINPIMMSAGELE 73 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH--TCCCEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh--CCCEEEEeHHHhh
Confidence 367888999999999999998876 4556655554443
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.98 E-value=3.1 Score=44.77 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCC--CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 204 FQLEGVRFGLRRGG--RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 204 yQ~~gV~~~l~~~g--~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+.+...+..+. ..+|.-+.|+|||..+-+++..+.
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 33444444444332 489999999999999988887754
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.95 E-value=7.1 Score=44.48 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCcchHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPAILRLSWAE 260 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~sL~~qW~~ 260 (997)
..++|.-+.|+|||..+-+++..+.. ..+++.|-...+...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~ 177 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 36889999999999999888876644 334555544444443433
No 157
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.84 E-value=1.8 Score=46.54 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCc
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPA 252 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~ 252 (997)
+.++|.-+.|+|||..|-+++..+.. .++++.+--.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 35889999999999999988887654 4456555433
No 158
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.61 E-value=0.72 Score=52.55 Aligned_cols=74 Identities=22% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..|+||.-++|+|||+.|=|++... ..+++.|..+.++..|..|-.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~--~~~f~~v~~s~l~~~~vGese~------------------------------- 261 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT--NATFLKLAAPQLVQMYIGEGAK------------------------------- 261 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH--TCEEEEEEGGGGCSSCSSHHHH-------------------------------
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh--CCCEEEEehhhhhhcccchHHH-------------------------------
Confidence 5579999999999999999998874 5577777777666554333222
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
.++............+|++||.+.+-.
T Consensus 262 ----~ir~lF~~A~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 262 ----LVRDAFALAKEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp ----HHHHHHHHHHHHCSEEEEEECTHHHHC
T ss_pred ----HHHHHHHHHHhcCCeEEeecchhhhhh
Confidence 122222223345678999999998853
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.03 E-value=7.5 Score=41.68 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCC--CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 203 PFQLEGVRFGLRRGG--RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g--~~ILaDemGLGKTlqaial~~~~~ 241 (997)
+...+.+..++..+. ..+|.-+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344444444444332 589999999999999998887754
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.81 E-value=2 Score=41.18 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
.+...+|.-+.|+|||..+-+++..+...|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455678899999999999988887665444
No 161
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.56 E-value=4.5 Score=42.55 Aligned_cols=31 Identities=23% Similarity=0.093 Sum_probs=23.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
.+++|.-++|+|||..|-+++... ..+++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~--~~~~~~i 95 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES--NFPFIKI 95 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH--TCSEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh--CCCEEEE
Confidence 368899999999999999888763 4454444
No 162
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.85 E-value=8.6 Score=42.38 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC--CcEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA--GSILVVC 250 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~--gp~LIV~ 250 (997)
.++|.-+.|+|||..+-+++..+... .+++.+-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 58899999999999998888776554 3444443
No 163
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.20 E-value=7 Score=42.10 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=29.4
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcch
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAIL 254 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL 254 (997)
..+..++|.-|+|+|||..|-++...... .+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 34567999999999999999888765433 456666644443
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.13 E-value=3 Score=46.05 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+..++|.-+.|+|||..+-+++..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446889999999999999888776544
No 165
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.08 E-value=2.3 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
..++||.-+.|+|||..|-+++... ..+++.|-
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~--~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC--SSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh--CCCEEEEE
Confidence 4578999999999999998887653 45555554
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.44 E-value=3.5 Score=47.53 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
..+++|.-++|+|||..+-+++... ..|++.|.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~--~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA--NVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH--TCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc--CCCeeeCC
Confidence 3468999999999999998887753 34554443
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=81.43 E-value=6.2 Score=43.36 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCC---CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 204 FQLEGVRFGLRRGG---RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 204 yQ~~gV~~~l~~~g---~~ILaDemGLGKTlqaial~~~~~ 241 (997)
...+.+...+..+. ..+|.-+.|+|||..+-+++..+.
T Consensus 23 ~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 23 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444444444333 368999999999999988887764
No 168
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.33 E-value=4.4 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..+++|.-+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999888877643
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.30 E-value=4.7 Score=47.07 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=27.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcch
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL 254 (997)
..+||.-+.|+|||..|-+++..+ ..+++.+-...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l--~~~~i~in~s~~ 113 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL--GYDILEQNASDV 113 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT--TCEEEEECTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc--CCCEEEEeCCCc
Confidence 468899999999999999988875 455555554443
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.45 E-value=3.4 Score=41.64 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=31.5
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcc--hHHHHHH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAI--LRLSWAE 260 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~s--L~~qW~~ 260 (997)
.|.-++|.-+.|+|||..+..++. ...++++++.-.. -...|..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHH
Confidence 345577889999999999988877 4567788777543 3344544
No 171
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.35 E-value=24 Score=37.09 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=31.9
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh-----------CCcEEEEeCcchHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS-----------AGSILVVCPAILRLSW 258 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~-----------~gp~LIV~P~sL~~qW 258 (997)
+.+|.-.+|.-+.|+|||..+..++..... .++++++.-.....+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 344666778889999999999888765544 3577777765433443
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.93 E-value=2.2 Score=45.56 Aligned_cols=25 Identities=36% Similarity=0.289 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
+.+++|.-+.|+|||..|-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578899999999999998887754
No 173
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=78.91 E-value=15 Score=39.50 Aligned_cols=29 Identities=10% Similarity=-0.046 Sum_probs=21.9
Q ss_pred HHHhcCC--CeEEEcCCCchHHHHHHHHHHH
Q 001912 211 FGLRRGG--RCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 211 ~~l~~~g--~~ILaDemGLGKTlqaial~~~ 239 (997)
.+++.+. ..|+.-+.|.|||-.+.+++..
T Consensus 11 ~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 11 RIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444333 5789999999999999888763
No 174
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.90 E-value=18 Score=38.93 Aligned_cols=38 Identities=13% Similarity=-0.064 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHH
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~ 239 (997)
|+.+.+.+..++..++.++|.-+.|.|||..+-.++..
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 45566666656655666788999999999988777665
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=78.27 E-value=11 Score=40.84 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHh------cCCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 202 LPFQLEGVRFGLR------RGGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 202 ~pyQ~~gV~~~l~------~~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
|+-|.+.+...+. .+++++|.-++|+|||.++-+++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4455555543221 3556889999999999999999887754
No 176
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=77.61 E-value=3 Score=50.48 Aligned_cols=65 Identities=26% Similarity=0.247 Sum_probs=49.3
Q ss_pred cChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-----CcEEEEeCc-chHHHHHHHHHHHCC
Q 001912 200 VILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPA-ILRLSWAEELERWLP 267 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-----gp~LIV~P~-sL~~qW~~Ei~k~~p 267 (997)
.|-|-|+++|.. .+|.+++--..|+|||.+.+.-+.++... ..+|+|+.+ .......+.+.+.++
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 467899999975 25667777889999999988766665532 359999988 666667777877764
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=76.46 E-value=9.3 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=19.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+||.-+.|+|||..|-+++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999998887754
No 178
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.17 E-value=9.3 Score=44.05 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPF 268 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~ 268 (997)
+.+..|.--+|+|||+.+.+++.. ..+|+|||||+ ....+|.+++..|+|.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~--~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHH--SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCeEEEeCCCchHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 345667778999999998887764 36799999999 7888999999999874
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.03 E-value=6 Score=45.16 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.4
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCcchHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPAILRLSWAEEL 262 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~sL~~qW~~Ei 262 (997)
..|.-.+|+-..|+|||.-++.++..... ..+++++....-..++...+
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 33445789999999999999988876653 45899988764445554443
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.88 E-value=14 Score=39.93 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~ 239 (997)
..++|.-+.|+|||..|-+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999999888665
No 181
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.58 E-value=6.7 Score=44.59 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=50.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVI 296 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvIt 296 (997)
-++++-..|.|||-++..++.++...| ++++|+--.-...-.+.+..|.... .+.++..... .+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~---gvpv~~~~~~--------~d---- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRY---HIEVFGNPQE--------KD---- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGG---TCEEECCTTC--------CC----
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhc---CCcEEecCCC--------CC----
Confidence 456777899999999999998887655 5666663322112223344443211 1222211110 00
Q ss_pred ehhHHHHHHHhhhhccccEEEecccccc
Q 001912 297 SYTMLHRLRKSMIEQDWALLIVDESHHV 324 (997)
Q Consensus 297 Ty~~l~~~~~~l~~~~~~~VIvDEaH~i 324 (997)
.-+.+......+...++|+||||.+=+.
T Consensus 167 p~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 167 AIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 1122223334444457999999999654
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.56 E-value=4.8 Score=49.43 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=24.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-CcEEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-GSILV 248 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-gp~LI 248 (997)
.++|.-++|+|||..|-+++..+... .+++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 48999999999999999998876543 34433
No 183
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.40 E-value=3.5 Score=44.23 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+|.-+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 589999999999999998887764
No 184
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=75.11 E-value=2.6 Score=51.46 Aligned_cols=67 Identities=27% Similarity=0.216 Sum_probs=49.4
Q ss_pred hhccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-----CcEEEEeCc-chHHHHHHHHHHHC
Q 001912 197 LLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-----GSILVVCPA-ILRLSWAEELERWL 266 (997)
Q Consensus 197 l~~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-----gp~LIV~P~-sL~~qW~~Ei~k~~ 266 (997)
+...|-|-|+++|.. .+|.+++--..|+|||.+.+.-+.++... +.+|+|+.+ .......+.+.+.+
T Consensus 8 ~l~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 8 LLAHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp HHTTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 445788999999975 24667777789999999998877666643 359999998 45555666666654
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.49 E-value=28 Score=37.51 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=35.8
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeCcchHHHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFISA-GSILVVCPAILRLSWAEELE 263 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P~sL~~qW~~Ei~ 263 (997)
+..|.-++|+-..|+|||.-++.++...... .++|++.--.-..+....+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH
Confidence 3445558899999999999998887665443 58999987644444444333
No 186
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.47 E-value=0.49 Score=49.99 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
..+++|.-+.|+|||..|-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4468899999999999999888764
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.41 E-value=2.8 Score=51.45 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..++||.-+.|+|||+.|-+++... ..+++.|-.+.++..|..|-.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~--~~~f~~v~~~~l~s~~vGese-------------------------------- 556 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLTMWFGESE-------------------------------- 556 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT--TCEEEECCHHHHHTTTCSSCH--------------------------------
T ss_pred CceEEEecCCCCCchHHHHHHHHHh--CCceEEeccchhhccccchHH--------------------------------
Confidence 4578999999999999998888753 445665555555544422111
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
..++.....-......+|++||.+.+-.
T Consensus 557 ---~~vr~lF~~Ar~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 557 ---ANVREIFDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp ---HHHHHHHHHHHTTCSEEEECSCGGGCC-
T ss_pred ---HHHHHHHHHHHHcCCceeechhhhHHhh
Confidence 1223333333345688999999999853
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=73.00 E-value=4.7 Score=45.00 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.8
Q ss_pred CeEE--EcCCCchHHHHHHHHHHHHhh
Q 001912 218 RCLI--ADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 218 ~~IL--aDemGLGKTlqaial~~~~~~ 242 (997)
.++| .-+.|+|||..+-.++..+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4666 789999999999888776543
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=72.78 E-value=18 Score=38.66 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=20.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~ 240 (997)
..++|.-+.|+|||..|-+++..+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887754
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.54 E-value=11 Score=42.84 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=25.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
-++++-..|+|||-++..++..+...| ++++|+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 355777899999999999888776644 566665
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.00 E-value=21 Score=37.87 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-C-cEEEEeCc
Q 001912 206 LEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-G-SILVVCPA 252 (997)
Q Consensus 206 ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-g-p~LIV~P~ 252 (997)
++.+.+.+..|.-++|+-+.|+|||..+..++...... | +++++.-.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 44555556666667789999999999998887776544 6 78887654
No 192
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.52 E-value=14 Score=37.85 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=66.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhCC-cEEE-Ee-CcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISAG-SILV-VC-PAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~g-p~LI-V~-P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
++++.-..|.|||..++.++..+...| .++| .+ |-.-...|.. +.. ++.... .+..+. ...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al-~~g-l~~~~~-~~~~~~-------------~~~ 71 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEAL-LNG-LPQQPL-LRTEYR-------------GMT 71 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHH-HTT-SCBCCC-EEEEET-------------TEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHH-hcC-ccccCc-ceeecC-------------Ccc
Confidence 578899999999999999998887776 4543 33 3345555543 111 221110 010000 111
Q ss_pred EEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHH
Q 001912 295 VISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQIN 369 (997)
Q Consensus 295 ItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~ 369 (997)
+.-.+ +... + ..++++|||||.=+. |........+++-+..+....-.+|..+-.-...++.|+...+.
T Consensus 72 ~~e~~-l~~~---L-~~~pdlvIVDElG~~-~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~it 140 (228)
T 2r8r_A 72 LEEMD-LDAL---L-KAAPSLVLVDELAHT-NAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGIT 140 (228)
T ss_dssp EEECC-HHHH---H-HHCCSEEEESCTTCB-CCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHH
T ss_pred ccccc-HHHH---H-hcCCCEEEEeCCCCC-CcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHc
Confidence 11111 1111 1 247999999994433 11122334567776665433324454443333345566655544
No 193
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=69.73 E-value=1.8 Score=35.13 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=32.2
Q ss_pred cccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 905 LCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 905 lc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
+|-.|..++.+.-.. .-++..-.|||.+|...|.+++++..|+
T Consensus 5 ~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~ 50 (66)
T 1vq8_U 5 ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLE 50 (66)
T ss_dssp BCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCT
T ss_pred EecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccch
Confidence 677787765443221 2255688999999999999999998775
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.40 E-value=15 Score=41.92 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.8
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CC-cEEEEeCcchHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS-AG-SILVVCPAILRLSWAE 260 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~-~g-p~LIV~P~sL~~qW~~ 260 (997)
+..|.-++|+-..|+|||.-++.++..... .| +++++....-..++..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 445556889999999999999988877654 34 8999886633344433
No 195
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=68.85 E-value=41 Score=32.98 Aligned_cols=110 Identities=21% Similarity=0.195 Sum_probs=63.9
Q ss_pred cCCCchHHHHHHHHHHHHhhCC-cEEEEeC--cchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEEEehh
Q 001912 223 DEMGLGKTLQAIAIAACFISAG-SILVVCP--AILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVVISYT 299 (997)
Q Consensus 223 DemGLGKTlqaial~~~~~~~g-p~LIV~P--~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvItTy~ 299 (997)
---|.|||..++.++..+...| ++|+|=- ..-...|.. .. .. ..+++-...+
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~-------~~-~~-----------------~~~~~~~~~~ 63 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSK-------AG-KA-----------------AFDVFTAASE 63 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHT-------TS-CC-----------------SSEEEECCSH
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh-------cC-CC-----------------CCcEEecCcH
Confidence 4568999999999998877665 6777763 344444532 10 00 1234444445
Q ss_pred HHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccCCCCChhHHHHHHHhh
Q 001912 300 MLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTPSLSRPYDIFHQINML 371 (997)
Q Consensus 300 ~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTPi~n~~~El~~ll~~l 371 (997)
.+......+. ..+|+||+|=.-.+ ......+.. .+.. +++--+|-... ..+..+++.+
T Consensus 64 ~l~~~l~~l~-~~yD~viiD~~~~~--------~~~~~~~l~---~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 64 KDVYGIRKDL-ADYDFAIVDGAGSL--------SVITSAAVM---VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHHTHHHHT-TTSSEEEEECCSSS--------SHHHHHHHH---HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCC--------CHHHHHHHH---HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 6666555554 46999999976544 111222222 3444 45545565555 6666666655
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.20 E-value=5 Score=41.76 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
..+++|.-++|+|||..+-+++..+ ..|++.|
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~--~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA--KVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH--TCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc--CCCEEEE
Confidence 3468899999999999998887754 3344443
No 197
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.17 E-value=1.6 Score=35.38 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=32.4
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+.-.. .-++..-.|||.+|...|.+++++..|+
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~ 51 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLK 51 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCS
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccch
Confidence 3688888776543221 2255788999999999999999987553
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=68.09 E-value=10 Score=40.70 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh-CC-cEEEEeC
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS-AG-SILVVCP 251 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~-~g-p~LIV~P 251 (997)
+..+++.-..|.|||-.+..++..+.. .| +++++.-
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 444556667999999999999888764 56 6776653
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.38 E-value=6.2 Score=48.42 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+.+.+|.-+.|+|||..+-+++..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999888876543
No 200
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=66.88 E-value=21 Score=36.29 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=34.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH--hhCCcEEEEeCcchHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACF--ISAGSILVVCPAILRLSWAEELER 264 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~--~~~gp~LIV~P~sL~~qW~~Ei~k 264 (997)
|.-.+|+-+.|+|||.-++-++... ...++++++.-..-..+....+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 4457899999999999998776542 335689998876555555554444
No 201
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.91 E-value=3.7 Score=31.83 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=30.7
Q ss_pred cchhccccCCcccccccccccccccCCCcccccccccChhhhHhHh
Q 001912 893 EYTQGWTINDEPLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEYR 938 (997)
Q Consensus 893 ~y~~~~~~~~~plc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~~~ 938 (997)
.-.|.|-.-|+|.|.-|..- ....++..++..||..|-...-
T Consensus 9 sk~Qr~p~pgePvCvvCGry----GeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 9 SKTQRWAEPGEPICVVCGRY----GEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp CCCCCCCCTTSCCCSSSSSC----CSEECSSSCCEESSHHHHHHHH
T ss_pred hhhhcCCCCCCceEEEecCc----cceeecCCCcchhhHHHHHHHH
Confidence 34688999999999999871 1223334689999999976543
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.42 E-value=8.9 Score=47.03 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVVV 295 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~VvI 295 (997)
..++||.-+.|+|||..|=+++..+ ..+++.|-...++..|..+-.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el--g~~~~~v~~~~l~sk~~gese~------------------------------- 284 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFFFLINGPEIMSKLAGESES------------------------------- 284 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT--TCEEEEEEHHHHHSSCTTHHHH-------------------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh--CCeEEEEEhHHhhcccchHHHH-------------------------------
Confidence 3478999999999999998887653 3345555444454433332222
Q ss_pred EehhHHHHHHHhhhhccccEEEecccccccc
Q 001912 296 ISYTMLHRLRKSMIEQDWALLIVDESHHVRC 326 (997)
Q Consensus 296 tTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN 326 (997)
.++............+|++||.+.+-.
T Consensus 285 ----~lr~lF~~A~~~~PsIIfIDEiDal~~ 311 (806)
T 3cf2_A 285 ----NLRKAFEEAEKNAPAIIFIDELDAIAP 311 (806)
T ss_dssp ----HHHHHHHHHTTSCSEEEEEESGGGTCC
T ss_pred ----HHHHHHHHHHHcCCeEEEEehhccccc
Confidence 122222223345678999999999854
No 203
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=64.69 E-value=7.6 Score=38.94 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=29.3
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
..|.+++--..|-|||-.|++++......| +++||-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457788999999999999999987766655 677773
No 204
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.14 E-value=28 Score=38.49 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=53.9
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
.|.-.+|+-+.|+|||..++.++..... .+++++|.......+|.. .+ +.. ....+.+.. .
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a--~~-~g~-d~~~l~i~~------------~-- 134 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYA--RA-LGV-NTDELLVSQ------------P-- 134 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH--HH-TTC-CGGGCEEEC------------C--
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHH--HH-cCC-CHHHceeec------------C--
Confidence 3445778999999999999988776544 468888887755555531 22 111 001111110 0
Q ss_pred EEEehhHHHHHHHhh-hhccccEEEeccccccc
Q 001912 294 VVISYTMLHRLRKSM-IEQDWALLIVDESHHVR 325 (997)
Q Consensus 294 vItTy~~l~~~~~~l-~~~~~~~VIvDEaH~iK 325 (997)
.+.+.+......+ .....++||||....+.
T Consensus 135 --~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 135 --DNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp --SSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred --CcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1223333333332 34679999999999885
No 205
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=63.90 E-value=14 Score=44.29 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=64.8
Q ss_pred cChhhHHHHHHHHHhc-CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEE
Q 001912 200 VILPFQLEGVRFGLRR-GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLV 277 (997)
Q Consensus 200 ~L~pyQ~~gV~~~l~~-~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~ 277 (997)
.+-.-|.+++..++.- .+..+|--+-|-|||..+..++..+. +.++|.+|+ .-+.. +.++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~~~~vtAP~~~a~~~----l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--GRAIVTAPAKASTDV----LAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--SCEEEECSSCCSCHH----HHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--hCcEEECCCHHHHHH----HHHHhhC---------
Confidence 5677899999877652 23345556699999955555555443 457999998 22221 2222210
Q ss_pred ccCCCCcccccCCCeEEEEehhHHHHHHHhhhhccccEEEeccccccccCCCCCcHHHHHHHHHHHhhcCcEEEEeccC
Q 001912 278 FGHRNNPVHLTRFPRVVVISYTMLHRLRKSMIEQDWALLIVDESHHVRCSKRTSEPEEVKAVLDVAAKVKRIVLLSGTP 356 (997)
Q Consensus 278 ~g~~~~~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~VIvDEaH~iKN~~~~~~s~~~~al~~l~~~~~~~llLTGTP 356 (997)
. |-....+.+. . ...+.|+||||||=.| + .-.+..+.... .+++||.|-
T Consensus 240 -----~---------i~~~~Pd~~~---~--~~~~~dlliVDEAAaI------p----~pll~~ll~~~-~~v~~~tTv 288 (671)
T 2zpa_A 240 -----K---------FRFIAPDALL---A--SDEQADWLVVDEAAAI------P----APLLHQLVSRF-PRTLLTTTV 288 (671)
T ss_dssp -----G---------CCBCCHHHHH---H--SCCCCSEEEEETGGGS------C----HHHHHHHHTTS-SEEEEEEEB
T ss_pred -----C---------eEEeCchhhh---h--CcccCCEEEEEchhcC------C----HHHHHHHHhhC-CeEEEEecC
Confidence 0 1111222211 1 1245899999999998 3 33444554322 368888884
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.46 E-value=42 Score=40.91 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
.++|.-++|+|||..|-+++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57899999999999999888766
No 207
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.36 E-value=45 Score=36.62 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=52.4
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcc-hHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAI-LRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~s-L~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
+|.-.+|+-+.|+|||..|+.++..... .+++++|.... .-..+ ..+|--. ...+.+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~--~~~l~i~~-------------- 122 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVD--IDNLLCSQ-------------- 122 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCC--GGGCEEEC--------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCC--hhheeeeC--------------
Confidence 3445789999999999999988876654 45788887753 22223 2333111 11111110
Q ss_pred EEEEehhHHHHHHHhh-hhccccEEEeccccccc
Q 001912 293 VVVISYTMLHRLRKSM-IEQDWALLIVDESHHVR 325 (997)
Q Consensus 293 VvItTy~~l~~~~~~l-~~~~~~~VIvDEaH~iK 325 (997)
..+.+.+......+ ....+++||||....+.
T Consensus 123 --~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 123 --PDTGEQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp --CSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred --CCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 01223333333322 24679999999999885
No 208
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.60 E-value=26 Score=30.75 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=44.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccC
Q 001912 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLS 579 (997)
Q Consensus 532 KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~ 579 (997)
-++||+.....+.-|...++..|+.++.+........|.+-++.|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999999999843
No 209
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=61.72 E-value=14 Score=40.55 Aligned_cols=44 Identities=20% Similarity=0.025 Sum_probs=32.0
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSW 258 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW 258 (997)
+|.-.+|.-+.|+|||..++.++..... .+++++|.-.....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH
Confidence 3445778899999999999988766544 5678888766444444
No 210
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=61.07 E-value=16 Score=44.86 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~----~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
.+.+++|.+.....+..+.+.+.. .|+++..++|+++..+|...++... .+++.|++.+.......+++...+.|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~-~g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLR-NGQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHH-SSCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECHHHHhhhhhccCCceE
Confidence 367899999998877666655554 3899999999999999999999988 67788877777666667788888877
Q ss_pred EEecCC
Q 001912 605 VFLELP 610 (997)
Q Consensus 605 I~~D~~ 610 (997)
|+=+-.
T Consensus 495 VIDEaH 500 (780)
T 1gm5_A 495 IIDEQH 500 (780)
T ss_dssp EEESCC
T ss_pred Eecccc
Confidence 775443
No 211
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=60.58 E-value=18 Score=41.19 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=34.2
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWA 259 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~ 259 (997)
+..|.-+||+-.+|.|||.-++-++..... ..+++++.--.-..|+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 344556889999999999999988876654 45899988664333433
No 212
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=60.00 E-value=3.6 Score=39.12 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=33.6
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+.-+. .-++....|||.+|...|.++.++.-|+
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~ 50 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIA 50 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHS
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccch
Confidence 4788888876544221 2256788999999999999999998775
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.61 E-value=39 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=24.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS-AGSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P 251 (997)
+.+.-..|.|||-.+..++..+.. .++++++.-
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 445667999999999888877665 457777753
No 214
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=59.28 E-value=1.1e+02 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 202 LPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 202 ~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
|+.+.+.+.- +.. +.++|.-+.|.|||..+-.++...
T Consensus 18 R~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 4455555555 544 567788899999999988777654
No 215
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=59.10 E-value=12 Score=40.25 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=24.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA-GSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P 251 (997)
.++.-..|.|||-.+..++..+... ++++++.-
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4466679999999999888877654 46776653
No 216
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=58.81 E-value=3.2 Score=39.57 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=33.7
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+.-+. .-++....|||.+|...|.++.++.-|+
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~ 52 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKIT 52 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGST
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccch
Confidence 4788888876544221 2256788999999999999999998776
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=57.73 E-value=11 Score=46.93 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=25.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEE
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACFISA-GSILVV 249 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV 249 (997)
+.++|.-++|+|||..|-+++..+... .+++.|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 367899999999999999988876553 344444
No 218
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=56.72 E-value=3.7 Score=39.25 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=33.1
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+.-.. .-++....|||.+|...|.++.++.-|+
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~ 52 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLT 52 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTS
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccch
Confidence 4788888876543221 2255788999999999999999998765
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=56.71 E-value=29 Score=37.55 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=51.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh---CCcEEEEeCc-chHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS---AGSILVVCPA-ILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~---~gp~LIV~P~-sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
..+|+-+.|+|||..++-++..... .++++.|... ++-... ++++ .. ... ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~l-Gv-d~d-------------------~l 85 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRSM-GV-DPE-------------------RV 85 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHHT-TC-CGG-------------------GE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHHh-CC-CHH-------------------He
Confidence 4678999999999999887766554 5678888876 443322 2232 11 001 23
Q ss_pred EEEeh---hHH-HHHHHh---hhhccccEEEeccccccc
Q 001912 294 VVISY---TML-HRLRKS---MIEQDWALLIVDESHHVR 325 (997)
Q Consensus 294 vItTy---~~l-~~~~~~---l~~~~~~~VIvDEaH~iK 325 (997)
++... +.+ ....+. +....+++||||=...+-
T Consensus 86 lv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 86 IHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 33332 222 222222 345689999999998874
No 220
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=55.10 E-value=3.9 Score=39.05 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=33.0
Q ss_pred ccccccccccccccCC---CcccccccccChhhhHhHhhccchhHHH
Q 001912 904 PLCKLCQKTCKSKNAK---NAEYFEDLFCNLDCYEEYRLRTSGRFLR 947 (997)
Q Consensus 904 plc~~c~~~~~~~~~~---~~~~~~~~fc~~~c~~~~~~~~~~~~~r 947 (997)
-+|-.|..++.+.-+. .-++....|||.+|...|.++.++.-|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~ 50 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQIN 50 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCT
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccch
Confidence 3688887765443221 2256788999999999999999998776
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=54.64 E-value=7.3 Score=42.70 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=34.3
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHh-hCCcEEEEeCcchHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFI-SAGSILVVCPAILRLSWA 259 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~-~~gp~LIV~P~sL~~qW~ 259 (997)
+..|.=.||+-..|.|||.-++.++.... ..++++++..-.-..+..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~ 90 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLA 90 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 44455578999999999999988877654 456899998764444433
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=54.11 E-value=18 Score=38.94 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHh-hCC-cEEEEe
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFI-SAG-SILVVC 250 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~-~~g-p~LIV~ 250 (997)
+.+++|.-++|+|||..+.+++..+. ..| +++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46789999999999999999988877 655 455443
No 223
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=54.01 E-value=21 Score=30.82 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=21.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVR 559 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~ 559 (997)
.+++|+.........+...|...|+.+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~ 30 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIW 30 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEE
Confidence 46778888887788888888777776543
No 224
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=53.79 E-value=64 Score=32.43 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=27.4
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-------CCcEEEEeCc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-------AGSILVVCPA 252 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-------~gp~LIV~P~ 252 (997)
.|.-.+|.-+.|+|||..+..++..... .++++.|.-.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3455678889999999999988875322 4567777644
No 225
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=53.70 E-value=95 Score=27.77 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=40.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLNL 598 (997)
...++||........+.|...|...|+.+..... .. ++++... ...+.++|+..... ..|+.+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~---~a~~~l~-~~~~dlii~d~~l~~~~g~~~ 69 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADS---GG---QCIDLLK-KGFSGVVLLDIMMPGMDGWDT 69 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---HH---HHHHHHH-TCCCEEEEEESCCSSSCHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCC---HH---HHHHHHH-hcCCCEEEEeCCCCCCCHHHH
Confidence 4668999999999999999999988876543332 22 3344443 23466767766543 345543
No 226
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.56 E-value=63 Score=34.82 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHh
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~ 241 (997)
..+|.-+.|+|||..+-+++..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 488999999999999988887553
No 227
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=53.32 E-value=2.9 Score=31.23 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=20.9
Q ss_pred ccccccccChhhhHhHhhccchhHH
Q 001912 922 EYFEDLFCNLDCYEEYRLRTSGRFL 946 (997)
Q Consensus 922 ~~~~~~fc~~~c~~~~~~~~~~~~~ 946 (997)
++..-.|||.+|...|.+++++..|
T Consensus 18 Dgkvf~FcssKc~k~~~~krnPrkl 42 (45)
T 3jyw_S 18 DSKIFRFQNSKSASLFKQRKNPRRI 42 (45)
T ss_dssp TSCCCCCCSHHHHGGGTSCCCTTTC
T ss_pred CCCEEEEECHHHHHHHHcCCCCccC
Confidence 3457899999999999999988654
No 228
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=53.23 E-value=5.3 Score=31.30 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=28.9
Q ss_pred ccccccccccccccCC-CcccccccccChhhhHhHhhccch
Q 001912 904 PLCKLCQKTCKSKNAK-NAEYFEDLFCNLDCYEEYRLRTSG 943 (997)
Q Consensus 904 plc~~c~~~~~~~~~~-~~~~~~~~fc~~~c~~~~~~~~~~ 943 (997)
-.|-.|-++++-.+.. .=-+...+|||..|-..|.-+..+
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~~~~~ 61 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSSGPSS 61 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCCCSSC
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHcccCCCCCC
Confidence 4799999986554332 223467899999999999876543
No 229
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=52.93 E-value=50 Score=36.33 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
+..---|.|||..|+.++..+...| ++|+|=
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3445789999999999988776655 788876
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=52.84 E-value=1.1e+02 Score=35.02 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=35.6
Q ss_pred HhcCCCeEEEcCCCchHHHHHHHHHHHHhh--CCcEEEEeCcchHHHHHHH
Q 001912 213 LRRGGRCLIADEMGLGKTLQAIAIAACFIS--AGSILVVCPAILRLSWAEE 261 (997)
Q Consensus 213 l~~~g~~ILaDemGLGKTlqaial~~~~~~--~gp~LIV~P~sL~~qW~~E 261 (997)
+..|.-.+|+-..|+|||.-++.++..... ..+++++.--.-..+....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHH
Confidence 334545789999999999999998887664 4589999876444444433
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=52.70 E-value=34 Score=37.08 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
+...+|.-+.|.|||..|+.++.. ..++++.|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyI 154 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYA 154 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEE
Confidence 344688999999999999998775 33444433
No 232
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=51.93 E-value=20 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=19.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFV 558 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~ 558 (997)
.++||........+.|...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~ 31 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQAD 31 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEE
Confidence 3677777777777777777777666443
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=51.91 E-value=54 Score=44.23 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=56.4
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
.+.-.+|+-+.|.|||.-++.++..... .+++++|.-.....||.. +.+. ... .++
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A---~rlG-~~~-------------------~~l 787 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA---RKLG-VDI-------------------DNL 787 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHH---HHTT-CCT-------------------TTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHH---HHcC-CCc-------------------cce
Confidence 3445789999999999999988876654 458999988877777752 2332 111 112
Q ss_pred EEE---ehhHHHHHHHhh-hhccccEEEeccccccc
Q 001912 294 VVI---SYTMLHRLRKSM-IEQDWALLIVDESHHVR 325 (997)
Q Consensus 294 vIt---Ty~~l~~~~~~l-~~~~~~~VIvDEaH~iK 325 (997)
.+. +.+.+......+ ....+++||||..+.+.
T Consensus 788 ~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~ 823 (2050)
T 3cmu_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred EEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhc
Confidence 222 222232222222 23578999999999885
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.71 E-value=6.7 Score=44.92 Aligned_cols=39 Identities=31% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCcch
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPAIL 254 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~sL 254 (997)
++++||.-++|+|||..|-+++..+....+++.|..+.+
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 357999999999999999999988644455655555444
No 235
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.90 E-value=26 Score=38.94 Aligned_cols=63 Identities=8% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISE---KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA 591 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~---~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a 591 (997)
..+.++||.+..+..+..+.+.+.. .|+.+..++|+++..+|...++.+. .++..|++.+...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~-~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-EDDYHILVFSTQF 127 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHH-HTCCSEEEEEHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhh-cCCCCEEEECHHH
Confidence 3577999999999999988888888 5889999999999988888888887 4456776666544
No 236
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=49.36 E-value=88 Score=42.27 Aligned_cols=91 Identities=9% Similarity=-0.103 Sum_probs=54.8
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCe
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPR 292 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~ 292 (997)
.++.+++|.-+.|+|||..|++++..... .+.++++....++.+-. ..+|--++.. +.+.. .
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~--a~~~G~dl~~--l~v~~--~----------- 1487 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKLGVDIDN--LLCSQ--P----------- 1487 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHTTCCTTT--CEEEC--C-----------
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH--HHHcCCCchh--ceeec--C-----------
Confidence 35667999999999999999998776544 46788888775443332 4455322211 11110 0
Q ss_pred EEEEehhHHHHHHH-hhhhccccEEEecccccc
Q 001912 293 VVVISYTMLHRLRK-SMIEQDWALLIVDESHHV 324 (997)
Q Consensus 293 VvItTy~~l~~~~~-~l~~~~~~~VIvDEaH~i 324 (997)
-+.+.+..... .......++|||||...+
T Consensus 1488 ---~~~E~~l~~~~~lvr~~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1488 ---DTGEQALEICDALARSGAVDVIVVDSVAAL 1517 (2050)
T ss_dssp ---SSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred ---ChHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 01123333322 234568999999998644
No 237
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=48.95 E-value=46 Score=38.87 Aligned_cols=75 Identities=12% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhccCCCceEEEEec--cccccccCcc---c--c
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGN-TLPRDRQSAVHSFQLSNEVKIAIIGI--TAGGVGLDFS---S--A 601 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~-~s~~eR~~~i~~F~~~~~~~VlLlSt--~agg~GLNL~---~--A 601 (997)
+..+|||.....+++.+.+. .+..+ .+.|. ++ +.++++.|+..++ .| |+++ ....+|||++ + +
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v-~~q~~~~~---~~~~~~~~~~~~~-~v-l~~v~gg~~~EGiD~~d~~g~~l 463 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPK-YVESEDSS---VEDLYSAISANNK-VL-IGSVGKGKLAEGIELRNNDRSLI 463 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSE-EECCSSCC---HHHHHHHTTSSSS-CE-EEEESSCCSCCSSCCEETTEESE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcE-EEcCCCCC---HHHHHHHHHhcCC-eE-EEEEecceecccccccccCCcce
Confidence 45788888888888877762 34333 34443 33 4567888963433 45 5554 6899999999 4 7
Q ss_pred cEEEEecCCCCc
Q 001912 602 QNVVFLELPQSP 613 (997)
Q Consensus 602 ~~VI~~D~~wnp 613 (997)
..||+.-+|+-+
T Consensus 464 ~~viI~~lPfp~ 475 (551)
T 3crv_A 464 SDVVIVGIPYPP 475 (551)
T ss_dssp EEEEEESCCCCC
T ss_pred eEEEEEcCCCCC
Confidence 889999887643
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.38 E-value=19 Score=37.14 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=19.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+++|.-+.|+|||..+-+++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348899999999999988887654
No 239
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=46.96 E-value=82 Score=28.36 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc--cccccCccc------c
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA--GGVGLDFSS------A 601 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a--gg~GLNL~~------A 601 (997)
+.+|||..........|...|...|+.+...... .+++..+.....+.++|+.... +..|+.+.. .
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~ 78 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTG------EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISE 78 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH------HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecCh------HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCC
Confidence 5689999999999999999999988876543322 2344555433456777888775 356776521 1
Q ss_pred cEEEEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEeeCCChHHHHHHHHH
Q 001912 602 QNVVFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFCAKDTTDESHWQNLN 652 (997)
Q Consensus 602 ~~VI~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li~~gTiEe~i~~~l~ 652 (997)
--||++....++.... ++.+.| +..++.+-.-.+.+...+.
T Consensus 79 ~~ii~ls~~~~~~~~~----~~~~~g------~~~~l~KP~~~~~l~~~i~ 119 (140)
T 3h5i_A 79 LPVVFLTAHTEPAVVE----KIRSVT------AYGYVMKSATEQVLITIVE 119 (140)
T ss_dssp CCEEEEESSSSCCCCG----GGGGSC------EEEEEETTCCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHH----HHHhCC------CcEEEeCCCCHHHHHHHHH
Confidence 2255555554544332 334444 4444555433344444443
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=46.90 E-value=40 Score=37.07 Aligned_cols=39 Identities=18% Similarity=-0.024 Sum_probs=29.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRL 256 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~ 256 (997)
-++|.-+.|+|||..++.++..... .+++++|.......
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 3567888999999999988876654 56788888774433
No 241
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=46.59 E-value=69 Score=27.50 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=19.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEE
Q 001912 532 KMIIFAHHLKVLDGVQEFISEKGIGFV 558 (997)
Q Consensus 532 KvLVFs~~~~~ld~L~~~L~~~gi~~~ 558 (997)
+++|........+.+...|...|+.+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~ 29 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEID 29 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 577777777777777777777676544
No 242
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=45.80 E-value=8.5 Score=44.15 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=38.5
Q ss_pred CCcc-cccccccccccccCC----Cc-----ccccccccChhhhHhHhhccchhHH--HHHHHHhhcccccc
Q 001912 901 NDEP-LCKLCQKTCKSKNAK----NA-----EYFEDLFCNLDCYEEYRLRTSGRFL--REELFRIEHGVCTN 960 (997)
Q Consensus 901 ~~~p-lc~~c~~~~~~~~~~----~~-----~~~~~~fc~~~c~~~~~~~~~~~~~--r~~~~~~~~g~c~~ 960 (997)
.+-| +|--||-||-..... .. ++..-.|||..|...|.. --..|+ +--|=....|-|+-
T Consensus 391 ~~lP~~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~~-~Pe~y~~~~~~~~~~~~g~~~~ 461 (500)
T 3ge3_A 391 ETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQ-DPVQYQNHMNIVDRFLAGQIQP 461 (500)
T ss_dssp SSCBCBCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHHH-CHHHHTTCCCHHHHHHTTCSSS
T ss_pred CCCCccccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHHh-ChHHHhCCCCHHHHHHccCCCC
Confidence 3567 999999997542111 01 356778999999999983 334454 23444567787754
No 243
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.58 E-value=17 Score=39.23 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 205 QLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 205 Q~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.++.+...+..+++++|..+.|+|||..+-+++..+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 334444444557789999999999999998887754
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.57 E-value=31 Score=42.47 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=20.6
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHH
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAAC 239 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~ 239 (997)
.+.+++|.-+.|+|||..+-+++..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3557899999999999988887664
No 245
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=44.87 E-value=19 Score=39.05 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=29.6
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-------CCcEEEEeCcc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-------AGSILVVCPAI 253 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-------~gp~LIV~P~s 253 (997)
.|.-.+|+-+.|+|||..++.++..... .+++++|.-..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3445789999999999999988876432 46788887664
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=43.71 E-value=44 Score=38.57 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 217 GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 217 g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+++|.-+.|+|||..+=+++...
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999998887754
No 247
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=42.60 E-value=45 Score=29.65 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
.+.+|||..........+...|...|+.+..... ..+ +++... ...+.++|+.... +..|+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~---a~~~l~-~~~~dlii~d~~l~~~~g~~~ 68 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHN---GFD---AGIKLS-TFEPAIMTLDLSMPKLDGLDV 68 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---HHH---HHHHHH-HTCCSEEEEESCBTTBCHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCC---HHH---HHHHHH-hcCCCEEEEecCCCCCCHHHH
Confidence 4568999999999999999999998887654332 232 233333 2235677777664 3456654
No 248
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=42.59 E-value=9.1 Score=44.22 Aligned_cols=38 Identities=26% Similarity=0.535 Sum_probs=27.6
Q ss_pred CCcc-cccccccccccccCC--------Cc--ccccccccChhhhHhHh
Q 001912 901 NDEP-LCKLCQKTCKSKNAK--------NA--EYFEDLFCNLDCYEEYR 938 (997)
Q Consensus 901 ~~~p-lc~~c~~~~~~~~~~--------~~--~~~~~~fc~~~c~~~~~ 938 (997)
.+-| +|--||-||-....- .. ++..--|||..|...|.
T Consensus 393 ~~lp~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~ 441 (511)
T 3u52_A 393 NTLPQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK 441 (511)
T ss_dssp CSCBCBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH
T ss_pred CCCCCccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH
Confidence 4557 999999997543111 11 45678899999999997
No 249
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.37 E-value=27 Score=36.56 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
+++|.-+.|+|||..+-+++...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48899999999999988887654
No 250
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=42.04 E-value=12 Score=43.14 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcc-cccccccccccccCCCc----------ccccccccChhhhHhHh
Q 001912 901 NDEP-LCKLCQKTCKSKNAKNA----------EYFEDLFCNLDCYEEYR 938 (997)
Q Consensus 901 ~~~p-lc~~c~~~~~~~~~~~~----------~~~~~~fc~~~c~~~~~ 938 (997)
.+.| +|--||-||... .-.| ++..--|||..|...|.
T Consensus 390 ~~lp~~c~~cq~P~~~~-~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~ 437 (491)
T 2inc_A 390 ETLPTICNMCNLPIAHT-PGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ 437 (491)
T ss_dssp SSCBCBCTTTCSBCBCC-CGGGCCCCCCCEEETTEEECCSSHHHHHHHH
T ss_pred CCCCCccCCCCCccCcC-CCCccccceeEEEECCEEEeecCHHHHHHHH
Confidence 3444 999999997554 2222 23445899999999987
No 251
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=41.96 E-value=1.1e+02 Score=30.74 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=30.1
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHH--HHhhCCcEEEEeCcchHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAA--CFISAGSILVVCPAILRLSW 258 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~--~~~~~gp~LIV~P~sL~~qW 258 (997)
..|.-+.|.-+.|+|||..+-.++. .....+..+++.-.....+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~ 74 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDL 74 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHH
Confidence 3455667888999999998877763 22456677777655444433
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.16 E-value=17 Score=42.16 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhCCc
Q 001912 205 QLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISAGS 245 (997)
Q Consensus 205 Q~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~gp 245 (997)
-++.+..++..++.++|..++|+|||..|-+++......++
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~ 70 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARA 70 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCE
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhH
Confidence 33445455556788999999999999999888776533334
No 253
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=40.90 E-value=49 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS-AGSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P 251 (997)
..+.-..|.|||-.+..++..+.. .++++++.-
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 335568999999999888877665 467777764
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=40.51 E-value=51 Score=37.12 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFIS-AGSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P 251 (997)
.+++-..|.|||..+..++..+.. .++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 446678999999999998887765 456777764
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=40.35 E-value=39 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=26.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-C-cEEEEeCc
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-G-SILVVCPA 252 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-g-p~LIV~P~ 252 (997)
.++++-..|.|||-++..++..+... | ++++|.-.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34456679999999999999888765 4 67777643
No 256
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=39.82 E-value=35 Score=44.17 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=45.5
Q ss_pred ccChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhhC-------CcEEEEeCc-chHHHHHHHHHHH
Q 001912 199 DVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFISA-------GSILVVCPA-ILRLSWAEELERW 265 (997)
Q Consensus 199 ~~L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~~-------gp~LIV~P~-sL~~qW~~Ei~k~ 265 (997)
..|-+-|..+|.. .+++.++.-..|+|||.+.+.-+..++.. ..+|||+++ .......+.+...
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 4688999999864 36678888999999999988755554433 258999999 4444455545443
No 257
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=39.19 E-value=25 Score=40.70 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 201 ILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 201 L~pyQ~~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
+-+.+.+.+.+.+..|..++|.-++|+|||-..-+++..+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4456677787778878889999999999998877766544
No 258
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=38.08 E-value=67 Score=28.80 Aligned_cols=62 Identities=6% Similarity=0.152 Sum_probs=39.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
..+|||..........|...|...|+.+..... .. ++++.+. ...+.++|+.... +..|+++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~---~~---~a~~~l~-~~~~dlvi~d~~l~~~~g~~~ 68 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHS---AA---QALEQVA-RRPYAAMTVDLNLPDQDGVSL 68 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECS---HH---HHHHHHH-HSCCSEEEECSCCSSSCHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECC---HH---HHHHHHH-hCCCCEEEEeCCCCCCCHHHH
Confidence 468999999999999999999988887544332 22 2333333 2235566666653 3345543
No 259
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.87 E-value=45 Score=30.53 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=36.4
Q ss_pred EEEEeCCHHH-------HHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhc
Q 001912 533 MIIFAHHLKV-------LDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ 577 (997)
Q Consensus 533 vLVFs~~~~~-------ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~ 577 (997)
|.||+..... ...+..+|..+|+.|..+|=+++.+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 4566544332 36888999999999999999999999999999984
No 260
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=37.83 E-value=30 Score=34.70 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeC
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCP 251 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P 251 (997)
|..-..|.|||..++.++..+...| ++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 4555789999999999998887665 7888766
No 261
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=37.78 E-value=71 Score=34.35 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHHHHhhCC
Q 001912 225 MGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 225 mGLGKTlqaial~~~~~~~g 244 (997)
=|+|||=.++.++..+...+
T Consensus 47 GGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp SCCSHHHHHHHHHHHTTTSC
T ss_pred CCCChHHHHHHHHHHHhhcC
Confidence 58999999999998876544
No 262
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=37.63 E-value=65 Score=41.31 Aligned_cols=79 Identities=6% Similarity=0.045 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcccccEE
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISE----KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNV 604 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~----~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~V 604 (997)
.+.+++|.+..+..+....+.+.. .++.+..++|..+..++...++... .+++.|++.+.......+++...+.|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~-~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA-EGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH-TTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECHHHHhCCccccccceE
Confidence 467999999999887777666654 3678999999999999999998887 67788877777777777888777766
Q ss_pred EEec
Q 001912 605 VFLE 608 (997)
Q Consensus 605 I~~D 608 (997)
|+=+
T Consensus 730 IiDE 733 (1151)
T 2eyq_A 730 IVDE 733 (1151)
T ss_dssp EEES
T ss_pred EEec
Confidence 6643
No 263
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=37.35 E-value=26 Score=45.12 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=50.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhC----CcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISA----GSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRVV 294 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~----gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~Vv 294 (997)
.|+|- .|+|||.+.+.-+.++... .++|+|||..+-.+....+.+.++. . ...++-
T Consensus 5 lV~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~~------------~-------~~~~~~ 64 (1166)
T 3u4q_B 5 FLVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDM------------G-------GMIRAQ 64 (1166)
T ss_dssp EEEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSSC------------S-------EESSEE
T ss_pred EEEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhhh------------c-------ceeeeE
Confidence 45555 8999999998766665543 5699999998888755555443221 0 013578
Q ss_pred EEehhHHHHH-HHhhhhccccEEEecccc
Q 001912 295 VISYTMLHRL-RKSMIEQDWALLIVDESH 322 (997)
Q Consensus 295 ItTy~~l~~~-~~~l~~~~~~~VIvDEaH 322 (997)
|.|+..+... .... ......|+|+..
T Consensus 65 V~TFhsla~~il~~~--g~~~~~ild~~~ 91 (1166)
T 3u4q_B 65 VFSFSRLAWRVLQHT--GGMSRPFLTSTG 91 (1166)
T ss_dssp EECHHHHHHHHHHHH--SCTTSCEECHHH
T ss_pred EecHHHHHHHHHHHc--CCCcccCcCHHH
Confidence 8888887642 2211 123445666654
No 264
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=36.15 E-value=23 Score=36.19 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
.|-+-++|.|||+.+++++..+...|
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 35677899999999999999888766
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=35.60 E-value=23 Score=34.97 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 207 ~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
.+|.+-+..+...+|.-.+|+|||-.+-.++..+
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444555556677889999999999998888765
No 266
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=35.21 E-value=13 Score=30.24 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=20.1
Q ss_pred ccccccccccccccCCCcccccccccChhhhHhH
Q 001912 904 PLCKLCQKTCKSKNAKNAEYFEDLFCNLDCYEEY 937 (997)
Q Consensus 904 plc~~c~~~~~~~~~~~~~~~~~~fc~~~c~~~~ 937 (997)
.-|-.|+++..-.. .....-|||..|+...
T Consensus 10 ~~CP~Cgkp~~W~~----~~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 10 VNCPTCGKTVVWGE----ISPFRPFCSKRCQLID 39 (68)
T ss_dssp EECTTTCCEEECSS----SSSCCSSSSHHHHHHH
T ss_pred CcCCCCCCcccccc----cCCCCcccCHHHHhhh
Confidence 36999999864210 0124589999999754
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=34.33 E-value=54 Score=35.79 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeCc
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVVCPA 252 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P~ 252 (997)
+.+++|.-++|+|||..|-+++..+ ..|++.+-..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~--~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL--DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc--CCCEEEechH
Confidence 4578999999999999999888765 4566655444
No 268
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=34.12 E-value=27 Score=36.20 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEE
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVV 249 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV 249 (997)
.|-+-++|.|||+.+++++..+...| ++...
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 45677999999999999999888766 34333
No 269
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=33.97 E-value=33 Score=31.09 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Q 001912 1 MEITEEQRQRAEANRLAALAKRKALQ 26 (997)
Q Consensus 1 ~~~~~eq~~~~e~~r~~a~~~~~~~~ 26 (997)
+.||.+|+.+||+-+.....+|+.--
T Consensus 19 L~Lt~~Q~~~leaie~~fa~~r~~le 44 (118)
T 2y39_A 19 VPLDANEREILELKEDAFAQRRREIE 44 (118)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999888887654
No 270
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=33.63 E-value=1.4e+02 Score=26.16 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=17.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCC
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGI 555 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi 555 (997)
.++||........+.+...|...+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~ 28 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFG 28 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcc
Confidence 4677777777777777777765543
No 271
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=33.30 E-value=1e+02 Score=26.74 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=39.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
.+++|..........+...|...|+.+.... +.. ++++.++ ...+.++|+.... +..|+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~---~al~~~~-~~~~dlii~D~~~p~~~g~~~ 64 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAH---DGN---EAVEMVE-ELQPDLILLDIMLPNKDGVEV 64 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SHH---HHHHHHH-TTCCSEEEEETTSTTTHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeC---CHH---HHHHHHh-hCCCCEEEEeCCCCCCCHHHH
Confidence 4788898999999999999988888765432 223 3344444 3345676776653 3356654
No 272
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=33.04 E-value=40 Score=35.54 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.2
Q ss_pred CCCchHHHHHHHHHHHHhhCC-cEEEE
Q 001912 224 EMGLGKTLQAIAIAACFISAG-SILVV 249 (997)
Q Consensus 224 emGLGKTlqaial~~~~~~~g-p~LIV 249 (997)
--|.|||..++.++..+...| ++|+|
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 679999999999988876655 67775
No 273
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=32.89 E-value=1.4e+02 Score=29.42 Aligned_cols=74 Identities=7% Similarity=0.060 Sum_probs=49.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-----ccccCcc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-----GVGLDFS 599 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~-----gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-----g~GLNL~ 599 (997)
+.++||.+..+..+..+.+.+... ++.+..++|+.+..++...+.. +...|++.+.... ...+++.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH----SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc----CCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 458999999999888888777664 7889999999887666554432 2346756665432 1234555
Q ss_pred cccEEEEe
Q 001912 600 SAQNVVFL 607 (997)
Q Consensus 600 ~A~~VI~~ 607 (997)
..+.||+=
T Consensus 158 ~~~~lViD 165 (220)
T 1t6n_A 158 HIKHFILD 165 (220)
T ss_dssp TCCEEEEE
T ss_pred cCCEEEEc
Confidence 66666653
No 274
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.74 E-value=1.1e+02 Score=26.97 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=14.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGF 557 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~ 557 (997)
.+|||........+.+...|. .|+.+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v 30 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDC 30 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEE
Confidence 356666666666666666555 44443
No 275
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=32.60 E-value=40 Score=33.69 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=30.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCCcEEEEe--CcchHHHHHHH
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAGSILVVC--PAILRLSWAEE 261 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~gp~LIV~--P~sL~~qW~~E 261 (997)
+..---|.|||..++.++..+...|++|+|= |..-...|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcC
Confidence 3455679999999999998887666888864 55555666543
No 276
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=31.98 E-value=61 Score=43.08 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=52.9
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHhh-CCcEEEEeCcchHHHHHHHHHHHCCCCCCceEEEEccCCCCcccccCCCeE
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFIS-AGSILVVCPAILRLSWAEELERWLPFCLPADIHLVFGHRNNPVHLTRFPRV 293 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~~-~gp~LIV~P~sL~~qW~~Ei~k~~p~~~~~~i~~~~g~~~~~~~~~~~~~V 293 (997)
.|..++|+-+.|+|||..++.++..... .++++++.-.....|-. ..+ +. ..... +
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~--A~~-lG-vd~~~-------------------L 787 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARK-LG-VDIDN-------------------L 787 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHH-TT-CCGGG-------------------C
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHH--HHH-cC-CChhh-------------------e
Confidence 4556889999999999999998876654 45788887654333332 222 21 10011 1
Q ss_pred EEE---ehhHHHHHHH-hhhhccccEEEeccccccc
Q 001912 294 VVI---SYTMLHRLRK-SMIEQDWALLIVDESHHVR 325 (997)
Q Consensus 294 vIt---Ty~~l~~~~~-~l~~~~~~~VIvDEaH~iK 325 (997)
.|. +.+.+..... .....+.++||||+.+.+.
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 222 2222222222 2234689999999999985
No 277
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.52 E-value=14 Score=45.62 Aligned_cols=27 Identities=37% Similarity=0.273 Sum_probs=22.5
Q ss_pred hcCCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 214 RRGGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 214 ~~~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
..+.+++|.-+.|+|||..|-+++..+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999998888765
No 278
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=31.47 E-value=31 Score=35.93 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG 244 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g 244 (997)
.|-+-++|.|||+.+++++..+...|
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 46677999999999999999888766
No 279
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.39 E-value=31 Score=35.76 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=21.7
Q ss_pred cCCCchHHHHHHHHHHHHhhCC-cEEEE
Q 001912 223 DEMGLGKTLQAIAIAACFISAG-SILVV 249 (997)
Q Consensus 223 DemGLGKTlqaial~~~~~~~g-p~LIV 249 (997)
---|.|||..++.++..+...| ++|+|
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 4569999999999998877655 67775
No 280
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.38 E-value=39 Score=34.06 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeC
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVCP 251 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P 251 (997)
+.+-.-|.|||..++.++..+...| ++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3455679999999999998877655 7888764
No 281
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.32 E-value=94 Score=27.60 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=50.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCcc--------
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDFS-------- 599 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL~-------- 599 (997)
...++||..........|...|...|+.+...... . +++..+.....+.++|+.... +..|+.+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~---~---~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 79 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGA---E---EARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASER 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH---H---HHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCH---H---HHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCC
Confidence 45689999999999999999999988876554332 2 233333333346777777663 34565542
Q ss_pred cccEEEEecCCCCccHHh
Q 001912 600 SAQNVVFLELPQSPSLML 617 (997)
Q Consensus 600 ~A~~VI~~D~~wnp~~~~ 617 (997)
..-.||++....++....
T Consensus 80 ~~~~ii~~s~~~~~~~~~ 97 (136)
T 3hdv_A 80 AALSIIVVSGDTDVEEAV 97 (136)
T ss_dssp TTCEEEEEESSCCHHHHH
T ss_pred CCCCEEEEeCCCChHHHH
Confidence 112466665555544333
No 282
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.16 E-value=28 Score=35.32 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=22.8
Q ss_pred EcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 222 ADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 222 aDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
.---|.|||..++.++..+...| ++|+|=
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44679999999999998887755 677763
No 283
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.92 E-value=77 Score=36.67 Aligned_cols=62 Identities=3% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG 592 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag 592 (997)
+.++||.+..+..+....+.|...|+.+..++|+.+..++......+. .+...|++++....
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~-~~~~~ilv~Tpe~l 126 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR-TGQIRLLYIAPERL 126 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-HTCCSEEEECHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEECHHHH
Confidence 357999999999999889999999999999999999998888888877 45678878877654
No 284
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.86 E-value=83 Score=27.29 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=39.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc--cccccCc
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA--GGVGLDF 598 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a--gg~GLNL 598 (997)
.+++|..........+...|...|+.+..... ..+=...+... .+.++|+.... +..|+.+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~a~~~~~~~----~~dlvi~d~~~~~~~~g~~~ 68 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTD---GKGSVEQIRRD----RPDLVVLAVDLSAGQNGYLI 68 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECC---HHHHHHHHHHH----CCSEEEEESBCGGGCBHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecC---HHHHHHHHHhc----CCCEEEEeCCCCCCCCHHHH
Confidence 47999999999999999999988887654332 23222223222 25566776654 3356554
No 285
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.81 E-value=1e+02 Score=27.56 Aligned_cols=53 Identities=8% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEec
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGI 589 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt 589 (997)
..++||..........+...|...|+.+...... .++++..+ ...+.++|+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~-~~~~dlvi~d~ 56 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNE------QEAFTFLR-REKIDLVFVDV 56 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSH------HHHHHHHT-TSCCSEEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHh-ccCCCEEEEeC
Confidence 4578888888888888888888878765533221 23344444 23455666665
No 286
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=29.67 E-value=65 Score=41.14 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccccc---cCcccc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISE---KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGVG---LDFSSA 601 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~---~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~G---LNL~~A 601 (997)
..+.++||.+..+..+..+.+.+.. .++.+..++|+++..+|...+..+. .++..|++.+....-.- +++...
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~-~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-EDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHH-TSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHh-CCCCCEEEECHHHHHHHHHhhcccCc
Confidence 3577899999999999999988887 5789999999999988888888887 55678877776554211 345566
Q ss_pred cEEEEec
Q 001912 602 QNVVFLE 608 (997)
Q Consensus 602 ~~VI~~D 608 (997)
+.||+=|
T Consensus 198 ~~lViDE 204 (1104)
T 4ddu_A 198 DFVFVDD 204 (1104)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 6666633
No 287
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=29.12 E-value=1.6e+02 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHhhC-CcEEEEeC
Q 001912 218 RCLIADEMGLGKTLQAIAIAACFISA-GSILVVCP 251 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~~~~-gp~LIV~P 251 (997)
.++++-..|.|||-.+..++.++... .+++||..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35566678999999999998887765 46888876
No 288
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.93 E-value=47 Score=34.17 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
+.+-.-|.|||..++.++..+...| ++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4566789999999999998877655 788876
No 289
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=28.71 E-value=45 Score=36.58 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHhhCCcEEEE
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACFISAGSILVV 249 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~~~~gp~LIV 249 (997)
...++|.-++|+|||..|-+++..+ ..|++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l--~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL--DIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh--CCCEEEe
Confidence 4568999999999999998888765 3454443
No 290
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=28.55 E-value=1.2e+02 Score=26.88 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-cCCe-EEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccC
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISE-KGIG-FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLD 597 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~-~gi~-~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLN 597 (997)
...++||..........|...|.. .|+. +...... . ++++.++. ..+.++|+..... ..|+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~---~---~a~~~l~~-~~~dlii~d~~l~~~~g~~ 71 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNP---F---DAGDLLHT-VKPDVVMLDLMMVGMDGFS 71 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSH---H---HHHHHHHH-TCCSEEEEETTCTTSCHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCH---H---HHHHHHHh-cCCCEEEEecccCCCcHHH
Confidence 356899999999999999999988 7887 4333222 2 23333332 2355667766543 34554
No 291
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=27.67 E-value=36 Score=35.77 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=22.1
Q ss_pred EcCCCchHHHHHHHHHHHHhhCC-cEEEE
Q 001912 222 ADEMGLGKTLQAIAIAACFISAG-SILVV 249 (997)
Q Consensus 222 aDemGLGKTlqaial~~~~~~~g-p~LIV 249 (997)
.---|.|||..++.++..+...| ++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34679999999999998877655 67766
No 292
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.09 E-value=77 Score=34.12 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcCCC--eEEEcCCCchHHHHHHHHHHHHh
Q 001912 203 PFQLEGVRFGLRRGGR--CLIADEMGLGKTLQAIAIAACFI 241 (997)
Q Consensus 203 pyQ~~gV~~~l~~~g~--~ILaDemGLGKTlqaial~~~~~ 241 (997)
++....+...+..|.- .+|.-+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444555556665442 78999999999999999988764
No 293
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=26.87 E-value=1.7e+02 Score=29.06 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-----ccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-----GVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~-----gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-----g~GLNL 598 (997)
.+.++||.+..+..+..+.+.+... ++.+..++|+.+..++...+ + ...|++.+.... ...+++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CCCEEEECHHHHHHHHhcCCccc
Confidence 4678999999999888888877764 67888999998876654432 2 356766665433 123455
Q ss_pred ccccEEEE
Q 001912 599 SSAQNVVF 606 (997)
Q Consensus 599 ~~A~~VI~ 606 (997)
...+.||+
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 55655555
No 294
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=26.84 E-value=72 Score=27.22 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.5
Q ss_pred cccHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 001912 2 EITEEQRQRA------EANRLAALAKRKALQQSA 29 (997)
Q Consensus 2 ~~~~eq~~~~------e~~r~~a~~~~~~~~~~~ 29 (997)
.||++|...| ..||.||.-=|++|++..
T Consensus 52 ~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~ 85 (92)
T 1skn_P 52 SLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRH 85 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4899987544 679999999999999654
No 295
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=26.80 E-value=49 Score=34.21 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=24.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
+..---|.|||..++.++..+...| ++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3455779999999999998877655 788876
No 296
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.72 E-value=37 Score=35.12 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=22.7
Q ss_pred EEcCCCchHHHHHHHHHHHHhhCCcEEEEe
Q 001912 221 IADEMGLGKTLQAIAIAACFISAGSILVVC 250 (997)
Q Consensus 221 LaDemGLGKTlqaial~~~~~~~gp~LIV~ 250 (997)
..---|.|||..|+.++..+....++|+|=
T Consensus 33 ~s~kGGvGKTT~a~~LA~~la~g~~VlliD 62 (267)
T 3k9g_A 33 ASIKGGVGKSTSAIILATLLSKNNKVLLID 62 (267)
T ss_dssp CCSSSSSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHHCCCCEEEEE
Confidence 345678999999999988877334677764
No 297
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.68 E-value=1.9e+02 Score=25.61 Aligned_cols=63 Identities=10% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc--ccccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISE-KGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG--GVGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~-~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag--g~GLNL 598 (997)
..+|||..........|...|.. .|+.+...... .++++.+.....+.++|+..... ..|+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~------~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~ 69 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENL------KKFYSIFKDLDSITLIIMDIAFPVEKEGLEV 69 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSH------HHHHTTTTTCCCCSEEEECSCSSSHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCH------HHHHHHHhcCCCCcEEEEeCCCCCCCcHHHH
Confidence 45788999988889999999988 78776543322 23445554214466666665543 345543
No 298
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.56 E-value=1e+02 Score=27.04 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCeEEEEeC------CHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 530 SNKMIIFAH------HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 530 ~~KvLVFs~------~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
..+|+||+. +=.......++|...|+.|..++=....+.++.+.+... ...+.++++.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~ 80 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIG 80 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEET
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence 568999998 456788899999999999888875555566666555443 3344444444
No 299
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.55 E-value=2.5e+02 Score=24.32 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=40.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc--ccccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG--GVGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag--g~GLNL 598 (997)
..++||..........+...|...|+.+.... +.. ++++.......+.++|+..... ..|+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~---~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~ 69 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVS---SGA---KAIEMLKSGAAIDGVVTDIRFCQPPDGWQV 69 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEES---SHH---HHHHHHHTTCCCCEEEEESCCSSSSCHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEEC---CHH---HHHHHHHcCCCCCEEEEeeeCCCCCCHHHH
Confidence 45799999999999999999998888765432 222 3344444222466777776654 356654
No 300
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=26.51 E-value=55 Score=33.01 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.4
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 001912 218 RCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 218 ~~ILaDemGLGKTlqaial~~~~ 240 (997)
+.|+.-+.|+|||..|.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998875
No 301
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.50 E-value=44 Score=32.68 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=19.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHH
Q 001912 1 MEITEEQRQRAEANRLAALAKRKAL 25 (997)
Q Consensus 1 ~~~~~eq~~~~e~~r~~a~~~~~~~ 25 (997)
+.||+||+.++.+-|+++.+++++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~L 90 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSAL 90 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999988887776654
No 302
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=26.43 E-value=2.1e+02 Score=28.86 Aligned_cols=28 Identities=4% Similarity=0.232 Sum_probs=20.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeE
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGF 557 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~ 557 (997)
..+|||........+.|...|...|+.+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v 64 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVV 64 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEE
Confidence 3467787777777777777777666543
No 303
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=26.25 E-value=2.1e+02 Score=31.30 Aligned_cols=110 Identities=8% Similarity=0.005 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCC------CCHHHHHHHHHHhcc--CCCceEEEEeccccc--cccCc------ccccEE
Q 001912 541 KVLDGVQEFISEKGIGFVRIDGN------TLPRDRQSAVHSFQL--SNEVKIAIIGITAGG--VGLDF------SSAQNV 604 (997)
Q Consensus 541 ~~ld~L~~~L~~~gi~~~~idG~------~s~~eR~~~i~~F~~--~~~~~VlLlSt~agg--~GLNL------~~A~~V 604 (997)
+.+..+.+++...|+.-+.+-|+ ++.+||.++++...+ .+.+.| ++.+.+.+ +-+.+ .+|+.|
T Consensus 80 ~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpV-iaGvg~~st~eai~la~~A~~~Gadav 158 (360)
T 4dpp_A 80 EAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKV-IGNTGSNSTREAIHATEQGFAVGMHAA 158 (360)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEE-EEECCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeE-EEecCCCCHHHHHHHHHHHHHcCCCEE
Confidence 45667777888889999999887 467999998877653 455666 44333222 12222 358899
Q ss_pred EEecCCCCccHHhhHHHhhhhcCCCCeEEEEEEe--eCCChHHHHHHHH
Q 001912 605 VFLELPQSPSLMLQAEDRAHRRGQTSAVNIYIFC--AKDTTDESHWQNL 651 (997)
Q Consensus 605 I~~D~~wnp~~~~Qa~gRa~RiGQ~k~V~Vy~Li--~~gTiEe~i~~~l 651 (997)
...-|.|++.....-..---.+-..-+|.+|..= +.-.+.-..+.++
T Consensus 159 lvv~PyY~k~sq~gl~~hf~~IA~a~PiilYNiP~rTg~~ls~e~l~~L 207 (360)
T 4dpp_A 159 LHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKL 207 (360)
T ss_dssp EEECCCSSCCCHHHHHHHHHTTGGGSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCCcccCCCCCHHHHHHH
Confidence 9998888765433322222222223488888753 2334444444443
No 304
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.91 E-value=1.1e+02 Score=27.53 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
..+|||........+.|...|...|+.+....-.. . .++++.+. ...+.++|+.... +..|+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~-~---~~a~~~l~-~~~~dlii~D~~l~~~~g~~~ 69 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDN-G---AKALYQVQ-QAKYDLIILDIGLPIANGFEV 69 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESS-H---HHHHHHHT-TCCCSEEEECTTCGGGCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECC-H---HHHHHHhh-cCCCCEEEEeCCCCCCCHHHH
Confidence 45899999999999999999999988743322221 1 23445554 3446777777664 3356554
No 305
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=25.76 E-value=1.5e+02 Score=25.29 Aligned_cols=57 Identities=7% Similarity=-0.006 Sum_probs=40.6
Q ss_pred CeEEEEeCCHH-HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEE
Q 001912 531 NKMIIFAHHLK-VLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587 (997)
Q Consensus 531 ~KvLVFs~~~~-~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLl 587 (997)
.+|.||+...- ......++|...|+.|..++=..+.+.++.+.+.-+....+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 46889986542 4778889999999999999988888888776655432223444444
No 306
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=25.47 E-value=2.2e+02 Score=28.90 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=48.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc------ccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEK----GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG------GVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~----gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag------g~GLNL 598 (997)
.+.++||.+..+..+..+.+.+... ++.+..+.|+.+..+....+. ....|++.+.... ..++++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA-----KKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH-----TCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc-----CCCCEEEECHHHHHHHHHcCCCcCc
Confidence 3568999999998877777666553 888999999987655443332 2456766665432 234566
Q ss_pred ccccEEEEe
Q 001912 599 SSAQNVVFL 607 (997)
Q Consensus 599 ~~A~~VI~~ 607 (997)
...+.||+=
T Consensus 185 ~~~~~lViD 193 (249)
T 3ber_A 185 RALKYLVMD 193 (249)
T ss_dssp TTCCEEEEC
T ss_pred cccCEEEEc
Confidence 666666663
No 307
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=25.47 E-value=82 Score=28.18 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=42.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccc---cccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG---VGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg---~GLNL 598 (997)
..++||..........|...|...|+.+...... .++++.++ ...+.++|+.....+ .|+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~ 70 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASA------ESFMRQQI-SDDAIGMIIEAHLEDKKDSGIEL 70 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSH------HHHTTSCC-CTTEEEEEEETTGGGBTTHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCH------HHHHHHHh-ccCCCEEEEeCcCCCCCccHHHH
Confidence 4689999999999999999999888876543321 23445554 345777777766443 56654
No 308
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.34 E-value=2.7e+02 Score=24.79 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=51.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcC-CeEEEEeCCCCHHHHHHHHHHhccC-CCceEEEEeccc-cccccCccc----
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKG-IGFVRIDGNTLPRDRQSAVHSFQLS-NEVKIAIIGITA-GGVGLDFSS---- 600 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~g-i~~~~idG~~s~~eR~~~i~~F~~~-~~~~VlLlSt~a-gg~GLNL~~---- 600 (997)
..+.+|||..........|...|...| +.+....... + .+..+... ..+.++|+.... +..|+++..
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~--~----~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRA--A----QIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSR 91 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCH--H----HHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHH--H----HHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHH
Confidence 456789999999999999999999988 7766544331 1 22222212 345676776653 335665421
Q ss_pred ---ccEEEEecCCCCccHHhh
Q 001912 601 ---AQNVVFLELPQSPSLMLQ 618 (997)
Q Consensus 601 ---A~~VI~~D~~wnp~~~~Q 618 (997)
.-.||++....++....+
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~ 112 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLD 112 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHH
T ss_pred hCCCCcEEEEeCCCCHHHHHH
Confidence 123566655555544433
No 309
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=24.79 E-value=56 Score=33.39 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=24.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 220 LIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
+..---|.|||..++.++..+...| ++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455679999999999998887655 677764
No 310
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=24.79 E-value=2e+02 Score=24.84 Aligned_cols=87 Identities=7% Similarity=0.059 Sum_probs=52.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCcc----c---c
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDFS----S---A 601 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL~----~---A 601 (997)
+.+++|..........+...|...|+.+.... +. ..++..+. ...+.++|+.... +..|+.+. . .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~---~~---~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQ---SA---EAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEES---CH---HHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeC---CH---HHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHhcCCC
Confidence 45899999999999999999998888755332 22 23444554 3346677777664 33566541 1 1
Q ss_pred cEEEEecCCCCccHHhhHHHhhhhcC
Q 001912 602 QNVVFLELPQSPSLMLQAEDRAHRRG 627 (997)
Q Consensus 602 ~~VI~~D~~wnp~~~~Qa~gRa~RiG 627 (997)
-.||++....++... .++.+.|
T Consensus 76 ~~ii~~s~~~~~~~~----~~~~~~g 97 (126)
T 1dbw_A 76 IPSIVITGHGDVPMA----VEAMKAG 97 (126)
T ss_dssp CCEEEEECTTCHHHH----HHHHHTT
T ss_pred CCEEEEECCCCHHHH----HHHHHhC
Confidence 135666554444333 3445555
No 311
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=24.73 E-value=47 Score=28.67 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCC
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~ 564 (997)
.++.+++|+|..-.........|...|+++..++|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3567899999887777888889999999989999985
No 312
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.68 E-value=1.1e+02 Score=28.16 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
...+|||........+.|...|...|+.+..... . .++++... ...+.++|+.... +..|+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~---~---~~al~~l~-~~~~dlii~D~~l~~~~g~~~ 69 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRN---G---REAVRFLS-LTRPDLIISDVLMPEMDGYAL 69 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS---H---HHHHHHHT-TCCCSEEEEESCCSSSCHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCC---H---HHHHHHHH-hCCCCEEEEeCCCCCCCHHHH
Confidence 4678999999999999999999998987654432 2 23455554 3456777877764 3456664
No 313
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=24.45 E-value=45 Score=35.40 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 221 IADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 221 LaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
++---|.|||..++.++..+...| ++|+|=
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445788999999999988877655 576663
No 314
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=24.41 E-value=1.4e+02 Score=25.61 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=44.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCccc------ccE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDFSS------AQN 603 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL~~------A~~ 603 (997)
.+++|..........+...|...|+.+.... +..+ +++... ...+.++|+.... +..|+.+.. .-.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~---~~~~---~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 75 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTA---SGAG---LREIMQ-NQSVDLILLDINLPDENGLMLTRALRERSTVG 75 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEES---SHHH---HHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHTTCCCE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEec---CHHH---HHHHHh-cCCCCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 4788999999899999999988887654332 2222 333333 2235566776654 335655421 123
Q ss_pred EEEecCCCCcc
Q 001912 604 VVFLELPQSPS 614 (997)
Q Consensus 604 VI~~D~~wnp~ 614 (997)
||++....++.
T Consensus 76 ii~~s~~~~~~ 86 (122)
T 1zgz_A 76 IILVTGRSDRI 86 (122)
T ss_dssp EEEEESSCCHH
T ss_pred EEEEECCCChh
Confidence 55555444443
No 315
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=24.20 E-value=2.1e+02 Score=30.77 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=51.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-----ccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEK-----GIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-----GVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~-----gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-----g~GLNL 598 (997)
.+.++||.+..+..+..+.+.+... ++.+..++|+.+..+....+.. +...|++.+.... ...+++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCPHIVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH----SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccc
Confidence 4568999999999888887777664 7889999999987766554433 2356766665543 223455
Q ss_pred ccccEEEE
Q 001912 599 SSAQNVVF 606 (997)
Q Consensus 599 ~~A~~VI~ 606 (997)
...+.||+
T Consensus 151 ~~~~~vVi 158 (391)
T 1xti_A 151 KHIKHFIL 158 (391)
T ss_dssp TTCSEEEE
T ss_pred cccCEEEE
Confidence 56666665
No 316
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=24.19 E-value=1.2e+02 Score=26.79 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=39.6
Q ss_pred CCeEEEEeC------CHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 530 SNKMIIFAH------HLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 530 ~~KvLVFs~------~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
..+|+||+. +=........+|...|+.|..++=....+.|+.+.+.-. ...+.++++.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g-~~tvP~ifi~ 78 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS-WPTYPQLYVS 78 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC-CCCCCEEEEC
Confidence 568999995 345678888999999999988876666666666544433 3444443443
No 317
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.15 E-value=61 Score=31.17 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCCcEEEEeC
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAGSILVVCP 251 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~gp~LIV~P 251 (997)
++|.-.+|+|||-++-.++..+...|..+++.|
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 456778999999999998887765554344445
No 318
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=23.93 E-value=3.1e+02 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=26.8
Q ss_pred cCCCeEEEcCCCchHHHHHHHHHHHHh-------hCCcEEEEeCcc
Q 001912 215 RGGRCLIADEMGLGKTLQAIAIAACFI-------SAGSILVVCPAI 253 (997)
Q Consensus 215 ~~g~~ILaDemGLGKTlqaial~~~~~-------~~gp~LIV~P~s 253 (997)
.|.-.+|.-+.|+|||..+..++.... ..+++++|.-..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 344577888999999999886654332 135678877653
No 319
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.66 E-value=1.4e+02 Score=26.03 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=52.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCccc--------c
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDFSS--------A 601 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL~~--------A 601 (997)
.++||.-........+...|...|+.+..... . .++++... ...+.++|+-... +..|+.+.. .
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~---~---~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~ 75 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAEN---G---QIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWK 75 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---H---HHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHHHTSTTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCC---H---HHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHHHhccccc
Confidence 47899999999999999999988887654322 2 23444454 3345676776653 345665421 1
Q ss_pred -cEEEEecCCCCccHHhhHHHhhhhcCC
Q 001912 602 -QNVVFLELPQSPSLMLQAEDRAHRRGQ 628 (997)
Q Consensus 602 -~~VI~~D~~wnp~~~~Qa~gRa~RiGQ 628 (997)
--||++....++... .++.+.|-
T Consensus 76 ~~pii~~s~~~~~~~~----~~~~~~Ga 99 (122)
T 3gl9_A 76 RIPVIVLTAKGGEEDE----SLALSLGA 99 (122)
T ss_dssp TSCEEEEESCCSHHHH----HHHHHTTC
T ss_pred CCCEEEEecCCchHHH----HHHHhcCh
Confidence 135666555554433 34555563
No 320
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.66 E-value=1.7e+02 Score=26.31 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCeEEEEeCC------HHHHHHHHHHHHHcCCe---EEEEeCCCCHHHHHHHHHHhccCCCceEEEEe
Q 001912 530 SNKMIIFAHH------LKVLDGVQEFISEKGIG---FVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIG 588 (997)
Q Consensus 530 ~~KvLVFs~~------~~~ld~L~~~L~~~gi~---~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlS 588 (997)
..+|+||+.. =.......++|...|+. |..++=....+.|+.+.+... ...+.++++.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg-~~tvP~vfI~ 81 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE-WPTIPQLYVN 81 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC-CCCCCeEEEC
Confidence 5689999984 45788889999999998 888876666666666555443 3444443443
No 321
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=23.53 E-value=44 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCC
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~ 564 (997)
.++++++|+|..-.........|...|+..+.+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 4577899999876556677888999999998999985
No 322
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=23.50 E-value=92 Score=26.74 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=35.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccCc
Q 001912 532 KMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLDF 598 (997)
Q Consensus 532 KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLNL 598 (997)
+++|........+.+...|...|+.+.... +..+ +++.+.. ..+.++|+..... ..|+++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~---~~~~---a~~~~~~-~~~dlvl~D~~l~~~~g~~~ 63 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAF---NGRE---ALEQFEA-EQPDIIILDLMLPEIDGLEV 63 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES---SHHH---HHHHHHH-HCCSEEEECSSCSSSCHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEec---CHHH---HHHHHHh-CCCCEEEEeccCCCCCHHHH
Confidence 688888888888888888888787654332 2222 2222321 2345666665542 345554
No 323
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.00 E-value=1.8e+02 Score=25.47 Aligned_cols=61 Identities=8% Similarity=0.234 Sum_probs=36.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccCc
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLDF 598 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLNL 598 (997)
.+++|..........+...|...|+.+..... ..+ ++.... ...+.++|+..... ..|+.+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~---a~~~~~-~~~~dlvl~D~~l~~~~g~~~ 65 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASD---GEE---ALKKAE-TEKPDLIVLDVMLPKLDGIEV 65 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---HHH---HHHHHH-HHCCSEEEEESSCSSSCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecC---HHH---HHHHHh-hcCCCEEEEecCCCCCCHHHH
Confidence 57889998888889999999888876543322 222 222222 12345666666543 345554
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=22.99 E-value=52 Score=31.65 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 001912 216 GGRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 216 ~g~~ILaDemGLGKTlqaial~~~~ 240 (997)
+..++|.-.+|+|||-++-.++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788889999999999888765
No 325
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=22.95 E-value=2.6e+02 Score=28.03 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=48.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHH----HcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccccc-----cccCc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFIS----EKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGG-----VGLDF 598 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~----~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg-----~GLNL 598 (997)
..+.++||.+..+..+..+.+.+. ..++.+..+.|+.+..+....+.. ...|++.+....- ..+++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER-----GVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-----CCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-----CCCEEEECHHHHHHHHHcCCCCc
Confidence 346789999999987766655554 458999999999987766554432 2557566553321 23456
Q ss_pred ccccEEEE
Q 001912 599 SSAQNVVF 606 (997)
Q Consensus 599 ~~A~~VI~ 606 (997)
...+.||+
T Consensus 175 ~~~~~lVi 182 (242)
T 3fe2_A 175 RRTTYLVL 182 (242)
T ss_dssp TTCCEEEE
T ss_pred ccccEEEE
Confidence 66666665
No 326
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=22.91 E-value=34 Score=39.45 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=25.3
Q ss_pred cccccccc-cccccCCC-------cccccccccChhhhHhHhh
Q 001912 905 LCKLCQKT-CKSKNAKN-------AEYFEDLFCNLDCYEEYRL 939 (997)
Q Consensus 905 lc~~c~~~-~~~~~~~~-------~~~~~~~fc~~~c~~~~~~ 939 (997)
+|--||-| |.....-. -++..--|||..|...|..
T Consensus 403 ~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~~ 445 (512)
T 1mty_D 403 IDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLA 445 (512)
T ss_dssp ECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHHH
T ss_pred eCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHHh
Confidence 89999998 65441111 1356788999999999873
No 327
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=22.73 E-value=47 Score=29.21 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCC
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~ 564 (997)
.++.+++|||..-.........|...|+++..++|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 3567899999887777788889999999999999996
No 328
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.67 E-value=1.3e+02 Score=26.91 Aligned_cols=65 Identities=8% Similarity=0.162 Sum_probs=41.9
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHhccC---------CCceEEEEecccc-ccc
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGI--GFVRIDGNTLPRDRQSAVHSFQLS---------NEVKIAIIGITAG-GVG 595 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi--~~~~idG~~s~~eR~~~i~~F~~~---------~~~~VlLlSt~ag-g~G 595 (997)
..+.++||..........+...|...|+ .+..... ..+ +++..... ..+.++|+..... ..|
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~---~~~---al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT---GDQ---ALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECS---HHH---HHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECC---HHH---HHHHHHhcccccCcccCCCCcEEEEECCCCCCCH
Confidence 3467899999999999999999999887 4443332 222 33333320 3466777776653 356
Q ss_pred cCc
Q 001912 596 LDF 598 (997)
Q Consensus 596 LNL 598 (997)
+.+
T Consensus 78 ~~~ 80 (149)
T 1k66_A 78 REV 80 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 329
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=22.50 E-value=1.4e+02 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=25.2
Q ss_pred cccccEEEEecCCCC---ccHHhhHHHhhhhcC
Q 001912 598 FSSAQNVVFLELPQS---PSLMLQAEDRAHRRG 627 (997)
Q Consensus 598 L~~A~~VI~~D~~wn---p~~~~Qa~gRa~RiG 627 (997)
|..||.|||.-|-|| |+.+..-+||+.+.|
T Consensus 68 l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g 100 (204)
T 2amj_A 68 FLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEG 100 (204)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHT
T ss_pred HHhCCEEEEECCccccCCCHHHHHHHHHHhhcC
Confidence 456899999999988 888999999986654
No 330
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.36 E-value=1.1e+02 Score=27.00 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHhcc------CCCceEEEEecccc-ccccCc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGI--GFVRIDGNTLPRDRQSAVHSFQL------SNEVKIAIIGITAG-GVGLDF 598 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi--~~~~idG~~s~~eR~~~i~~F~~------~~~~~VlLlSt~ag-g~GLNL 598 (997)
+.++||..........|...|...|+ .+...... .++++.+.. ...+.++|+..... ..|+.+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~------~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDG------MEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREV 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSH------HHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCH------HHHHHHHHcccccccCCCCcEEEEecCCCcccHHHH
Confidence 46899999999999999999999887 44333322 234455543 14567778777653 356554
No 331
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.36 E-value=1.5e+02 Score=27.06 Aligned_cols=63 Identities=13% Similarity=0.298 Sum_probs=43.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccc-ccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAG-GVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~ag-g~GLNL 598 (997)
++.+|||..........|...|...|+.+...... .++++... ...+.++|+..... ..|+.+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~ 69 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSP------LDALEALK-GTSVQLVISDMRMPEMGGEVF 69 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCH------HHHHHHHT-TSCCSEEEEESSCSSSCHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCH------HHHHHHHh-cCCCCEEEEecCCCCCCHHHH
Confidence 45689999999999999999999988876643322 23455555 33467778777643 356654
No 332
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=22.30 E-value=47 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCC
Q 001912 528 PRSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNT 564 (997)
Q Consensus 528 ~~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~ 564 (997)
.++.++||+|..-.........|...|+++..++|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4577899999887677788889999999999999985
No 333
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.18 E-value=71 Score=34.31 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=26.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEeCc
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVCPA 252 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~P~ 252 (997)
++..---|.|||..|++++..+...| ++|+|--.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34566789999999999988876655 67777643
No 334
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.78 E-value=1.7e+02 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=22.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFV 558 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~ 558 (997)
.+++|..........+...|...|+.++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv 30 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVA 30 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEE
Confidence 4688888888888888888887787643
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.60 E-value=56 Score=35.16 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 224 EMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 224 emGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
==|.|||-+++-++..+...| ++|+|=
T Consensus 56 KGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 56 KGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458999999999888877665 577764
No 336
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.55 E-value=77 Score=33.64 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.8
Q ss_pred EcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 222 ADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 222 aDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
.-..|.|||..|+.++..+...| ++|+|-
T Consensus 111 s~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34579999999999988876655 677774
No 337
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=21.23 E-value=1.5e+02 Score=34.80 Aligned_cols=63 Identities=6% Similarity=0.108 Sum_probs=52.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhc-cCCCceEEEEecccc
Q 001912 530 SNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQ-LSNEVKIAIIGITAG 592 (997)
Q Consensus 530 ~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~-~~~~~~VlLlSt~ag 592 (997)
+.++||.+..+..+....+.|...|+.+..++|+++..++..+...+. ..+...|++++....
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L 147 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKI 147 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHh
Confidence 458999999999999888899989999999999999999888888774 245678878887644
No 338
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.20 E-value=2.7e+02 Score=29.48 Aligned_cols=112 Identities=8% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCC------CCHHHHHHHHHHhcc--CCCceEEEEecccccc--ccCc------ccccE
Q 001912 540 LKVLDGVQEFISEKGIGFVRIDGN------TLPRDRQSAVHSFQL--SNEVKIAIIGITAGGV--GLDF------SSAQN 603 (997)
Q Consensus 540 ~~~ld~L~~~L~~~gi~~~~idG~------~s~~eR~~~i~~F~~--~~~~~VlLlSt~agg~--GLNL------~~A~~ 603 (997)
.+.+..+.+++...|+.-+.+.|+ ++.+||.++++...+ ++.+.| ++.+.+.++ -+.+ .+||.
T Consensus 35 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpv-iaGvg~~~t~~ai~la~~a~~~Gada 113 (304)
T 3l21_A 35 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARV-IAGAGTYDTAHSIRLAKACAAEGAHG 113 (304)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEE-EEECCCSCHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeE-EEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 345667777787889999999887 477999999987764 456667 444433222 1222 35899
Q ss_pred EEEecCCCCccHHhhHHHhhhhcCC--CCeEEEEEEe--eCCChHHHHHHHHH
Q 001912 604 VVFLELPQSPSLMLQAEDRAHRRGQ--TSAVNIYIFC--AKDTTDESHWQNLN 652 (997)
Q Consensus 604 VI~~D~~wnp~~~~Qa~gRa~RiGQ--~k~V~Vy~Li--~~gTiEe~i~~~l~ 652 (997)
|...-|.|++.....-..=--.+-. .-+|.+|..= +.-.+....+.++.
T Consensus 114 vlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 114 LLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp EEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 9999998876543333222222222 3578888752 33345444444443
No 339
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.00 E-value=2.9e+02 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=17.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHc
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEK 553 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~ 553 (997)
.+|||..........|...|...
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~ 26 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE 26 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc
Confidence 46777777777777777777655
No 340
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.92 E-value=1.3e+02 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=21.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCeEE
Q 001912 531 NKMIIFAHHLKVLDGVQEFISEKGIGFV 558 (997)
Q Consensus 531 ~KvLVFs~~~~~ld~L~~~L~~~gi~~~ 558 (997)
.+++|..........+...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~ 31 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTF 31 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEE
Confidence 4688888888888888888887777654
No 341
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=20.90 E-value=1.8e+02 Score=25.21 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=40.1
Q ss_pred CCeEEEEeCC------HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEE
Q 001912 530 SNKMIIFAHH------LKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAII 587 (997)
Q Consensus 530 ~~KvLVFs~~------~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLl 587 (997)
..+|+||+.. =.....+..+|...|+.|..++=......+..+..... ...+.++++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~ifi 76 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN-WPTYPQLYV 76 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS-CCSSCEEEC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC-CCCCCEEEE
Confidence 4579999872 23577888889999999999988777776777666554 334444343
No 342
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=20.84 E-value=82 Score=34.31 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 219 CLIADEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 219 ~ILaDemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
++..---|.|||..|++++..+...| ++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44566789999999999988877665 577776
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.74 E-value=77 Score=36.07 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=27.5
Q ss_pred hHHHHHHHHHh--cCCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 204 FQLEGVRFGLR--RGGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 204 yQ~~gV~~~l~--~~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
..++.+.-.+. ..+++||.-+.|+|||..+-+++..+..
T Consensus 187 ~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 33444433443 3457899999999999999998887643
No 344
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=20.69 E-value=84 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=23.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhC-C-cEEEEe
Q 001912 220 LIADEMGLGKTLQAIAIAACFISA-G-SILVVC 250 (997)
Q Consensus 220 ILaDemGLGKTlqaial~~~~~~~-g-p~LIV~ 250 (997)
+..---|.|||..++.++..+... | ++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 344567999999999999988765 4 677765
No 345
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.67 E-value=2.8e+02 Score=23.95 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhccCCCceEEEEeccc-cccccCc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEKGIGFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITA-GGVGLDF 598 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~gi~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~a-gg~GLNL 598 (997)
.+.++||..........+...|...|+.+.... +.. ++++..+ ...+.++|+.... +..|+++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~---~a~~~l~-~~~~dlvi~d~~l~~~~g~~~ 69 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAA---DGV---DALELLG-GFTPDLMICDIAMPRMNGLKL 69 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---CHH---HHHHHHT-TCCCSEEEECCC-----CHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC---CHH---HHHHHHh-cCCCCEEEEecCCCCCCHHHH
Confidence 467899999999999999999999998765432 222 3455554 3346676776653 3345544
No 346
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=20.52 E-value=80 Score=34.56 Aligned_cols=36 Identities=22% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCeEEEcCCCchHHHHHHHHHHHHhh
Q 001912 207 EGVRFGLRRGGRCLIADEMGLGKTLQAIAIAACFIS 242 (997)
Q Consensus 207 ~gV~~~l~~~g~~ILaDemGLGKTlqaial~~~~~~ 242 (997)
+.+.+.+..|..++|.-++|+|||-..-+++..+..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 677778888888999999999999888777665543
No 347
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=20.39 E-value=2e+02 Score=31.73 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc-CC---eEEEEeCCCCHHHHHHHHHHhccCCCceEEEEecccccc-----ccCcc
Q 001912 529 RSNKMIIFAHHLKVLDGVQEFISEK-GI---GFVRIDGNTLPRDRQSAVHSFQLSNEVKIAIIGITAGGV-----GLDFS 599 (997)
Q Consensus 529 ~~~KvLVFs~~~~~ld~L~~~L~~~-gi---~~~~idG~~s~~eR~~~i~~F~~~~~~~VlLlSt~agg~-----GLNL~ 599 (997)
.+.++||.+..+..+....+.+... +. .+..++|+.+..++..... +..|++++...... .+++.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSEEEECHHHHHHHHHTTSCCTT
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCEEEecHHHHHHHHhcCCcchh
Confidence 4678999999998888887777765 66 8999999998887665443 24576777664432 34566
Q ss_pred cccEEEEecCC--CCccHHhhHHHhhhh
Q 001912 600 SAQNVVFLELP--QSPSLMLQAEDRAHR 625 (997)
Q Consensus 600 ~A~~VI~~D~~--wnp~~~~Qa~gRa~R 625 (997)
..+.||+=+-. -+...+.+...+..+
T Consensus 125 ~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 125 DVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp SCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 67777763332 233344444444443
No 348
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=20.38 E-value=80 Score=33.99 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcC-------CCeEEEcCCCchHHHHHHHHHHHH
Q 001912 204 FQLEGVRFGLRRG-------GRCLIADEMGLGKTLQAIAIAACF 240 (997)
Q Consensus 204 yQ~~gV~~~l~~~-------g~~ILaDemGLGKTlqaial~~~~ 240 (997)
..++.+.+.+..+ ..++|.-+.|+|||..+-+++..+
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455555554422 468899999999999988887764
No 349
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=20.11 E-value=62 Score=33.28 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=22.6
Q ss_pred cCCCchHHHHHHHHHHHHhhCC-cEEEEe
Q 001912 223 DEMGLGKTLQAIAIAACFISAG-SILVVC 250 (997)
Q Consensus 223 DemGLGKTlqaial~~~~~~~g-p~LIV~ 250 (997)
---|.|||..++.++..+...| ++|+|=
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4679999999999998876655 687774
No 350
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=20.05 E-value=67 Score=33.72 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=27.4
Q ss_pred EcCCCchHHHHHHHHHHHHhhCC-cEEEEe--C-cchHHHHHH
Q 001912 222 ADEMGLGKTLQAIAIAACFISAG-SILVVC--P-AILRLSWAE 260 (997)
Q Consensus 222 aDemGLGKTlqaial~~~~~~~g-p~LIV~--P-~sL~~qW~~ 260 (997)
.---|.|||..++.++..+...| ++|+|= | ..-+..|..
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhC
Confidence 34579999999999998887666 677764 4 334445543
Done!