BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001914
(996 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/874 (59%), Positives = 657/874 (75%), Gaps = 4/874 (0%)
Query: 122 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFK 181
KF++L L+ R +LP+SIR+LLE+A+RNCD F VKKED+E I++W + +E+PFK
Sbjct: 39 KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFK 98
Query: 182 PARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAV 241
PARV+LQDFTGVP+VVD A MRDA+ KLG D KINP+ PVDLVIDHS+QVD R +++
Sbjct: 99 PARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADSL 158
Query: 242 KANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD 301
+ N +LEF+RN+ERF FLKWGS AF NM ++PPGSGI+HQVNLEYL RVVF+ +G YPD
Sbjct: 159 QKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD 218
Query: 302 SVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 361
S+VGTDSHTTMID MLGQP+SMVLP V+G++L GK H VT+TD
Sbjct: 219 SLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 278
Query: 362 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421
+VLT+T+ LR+ GVVGKFVEF G G+ +LS+ADRATIANM PEYGAT FFPVD V+++Y
Sbjct: 279 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKY 338
Query: 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDR 481
L TGR + V + YL+A MF DY++P Q+ ++ +EL+L V PC SGPKRP D+
Sbjct: 339 LVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDK 398
Query: 482 VPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTN 541
V + +MK D+ SCL K GFKGF V + F ++ L HGSVVIAAITS TN
Sbjct: 399 VAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTN 458
Query: 542 TSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601
TSNPSVMLGAGL+AKKA + GL VKP+VKTSL+PGSGVVT YL +SG+ YL++ GF +V
Sbjct: 459 TSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVV 518
Query: 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661
GYG TCIGNSG L E V IT D+VA VLSGNRNFEGRVHP TRANYLASPPLV+A
Sbjct: 519 GYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 578
Query: 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKG 721
YA+AGT+ IDF+KEP+GT G+ V+ +DIWPT EEI V + V+P MF Y+ I
Sbjct: 579 YAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETV 638
Query: 722 NPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDH 781
N +WN L+ P+ KLY W+P STYI PP+F+++T+D + DAY LLN GDS+TTDH
Sbjct: 639 NASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDH 698
Query: 782 ISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841
ISPAG+I ++SP A+YL RG+ R+FNSYGSRRGND +MARGTFANIRL+N+ LN +
Sbjct: 699 ISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-A 757
Query: 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 901
P+T+H+P+GE L VFDAA +Y+ GH I+LAG EYGSGSSRDWAAKGP LLG+KAV+A+
Sbjct: 758 PQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAE 817
Query: 902 SFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDS 961
S+ERIHRSNLVGMG+IPL + GE+ADSLGLTG ER++I +P ++ P V V D+
Sbjct: 818 SYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLT---PRMHVQVKLDT 874
Query: 962 GKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 995
GK+F +RFDT+VEL YF +GGIL ++IR + K
Sbjct: 875 GKTFQAVIRFDTDVELTYFHNGGILNYMIRKMAK 908
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 1101 bits (2848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/874 (60%), Positives = 657/874 (75%), Gaps = 4/874 (0%)
Query: 122 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFK 181
KF++L L D R +LP+SIR+LLE+AIRNCD F VKK+D+E I+ W + K +E+PFK
Sbjct: 19 KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78
Query: 182 PARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAV 241
PARV+LQDFTGVPAVVD A MRDA+ KLG D KINP+ P DLVIDHS+QVD R +++
Sbjct: 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSL 138
Query: 242 KANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD 301
+ N +LEF+RN+ERF FLKWGS AFHNM ++PPGSGI+HQVNLEYL RVVF+ +G YPD
Sbjct: 139 QKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPD 198
Query: 302 SVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 361
S+VGTDSHTTMID MLGQP+SMVLP V+G++L GK H VT+TD
Sbjct: 199 SLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258
Query: 362 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421
+VLT+T+ LR+ GVVGKFVEF G G+ +LS+ADRATIANM PEYGAT FFPVD V++ Y
Sbjct: 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318
Query: 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDR 481
L TGR +E + ++ YL+A MF D+N+P Q+ ++ +EL+L V PC SGPKRP D+
Sbjct: 319 LVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDK 378
Query: 482 VPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTN 541
V + +MK D+ SCL K GFKGF V E F + L HGSVVIAAITSCTN
Sbjct: 379 VAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTN 438
Query: 542 TSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601
TSNPSVMLGAGL+AKKA + GL V P++KTSL+PGSGVVT YL +SG+ YL++ GF +V
Sbjct: 439 TSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVV 498
Query: 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661
GYGC TCIGNSG L E V IT D+VA VLSGNRNFEGRVHP TRANYLASPPLV+A
Sbjct: 499 GYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558
Query: 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKG 721
YA+AGT+ IDF+KEP+G G+ V+ KDIWPT +EI V + V+P MFK Y+ I
Sbjct: 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETV 618
Query: 722 NPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDH 781
N +WN L+ P+ KL+ W+ STYI PP+F+++T+D + DAY LLN GDS+TTDH
Sbjct: 619 NESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDH 678
Query: 782 ISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841
ISPAG+I ++SP A+YL RG+ R+FNSYGSRRGND VMARGTFANIRL+N+ LN +
Sbjct: 679 ISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-A 737
Query: 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 901
P+T+H+P+GE L VFDAA +Y+ AG I+LAG EYG+GSSRDWAAKGP LLG+KAV+A+
Sbjct: 738 PQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797
Query: 902 SFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDS 961
S+ERIHRSNLVGMG+IPL + GE+AD+LGLTG ER++I +P ++P V V D+
Sbjct: 798 SYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPEN---LKPQMKVQVKLDT 854
Query: 962 GKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 995
GK+F +RFDT+VEL YF +GGIL ++IR + K
Sbjct: 855 GKTFQAVMRFDTDVELTYFLNGGILNYMIRKMAK 888
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 225/822 (27%), Positives = 342/822 (41%), Gaps = 155/822 (18%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVN 833
TTDHIS AG P K+ RG NI N
Sbjct: 562 KGKCTTDHISAAG------PWLKF-------------------------RGHLDNIS--N 588
Query: 834 KLLNGEVGPKT------VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
LL G + + + T E V D A YK G +++ YG GSSR+ +A
Sbjct: 589 NLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSA 648
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKIS 947
P LG +A+I KSF RIH +NL G++PL F + AD + ++ +I +
Sbjct: 649 LEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLK 703
Query: 948 EIRPGQDVTVTTDSGKSFTCTVRFD---TEVELAYFDHGGIL 986
+ PG+ +T T+ + E ++ +F G L
Sbjct: 704 DFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 225/822 (27%), Positives = 342/822 (41%), Gaps = 155/822 (18%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVN 833
TTDHIS AG P K+ RG NI N
Sbjct: 562 KGKCTTDHISAAG------PWLKF-------------------------RGHLDNIS--N 588
Query: 834 KLLNGEVGPKT------VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
LL G + + + T E V D A YK G +++ YG GSSR+ +A
Sbjct: 589 NLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSA 648
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKIS 947
P LG +A+I KSF RIH +NL G++PL F + AD + ++ +I +
Sbjct: 649 LEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLK 703
Query: 948 EIRPGQDVTVTTDSGKSFTCTVRFD---TEVELAYFDHGGIL 986
+ PG+ +T T+ + E ++ +F G L
Sbjct: 704 DFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 327/784 (41%), Gaps = 153/784 (19%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVAVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAGSI-----HKDSPTAKYLLER-GVERRDFNSYGSRRGNDEVMARGTFA 827
TTDHIS AG H D+ + L+ +E R NS
Sbjct: 561 KGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANS----------------- 603
Query: 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
V + E GP V D A YK G +++ YG G+SR+ +A
Sbjct: 604 ----VRNAVTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSA 647
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED------ADSLGLTGHERFSID 941
P LG +A+I KSF RIH +NL G++PL F D D L + G + F+
Sbjct: 648 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPG 707
Query: 942 LPSK 945
P K
Sbjct: 708 KPLK 711
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 220/784 (28%), Positives = 327/784 (41%), Gaps = 153/784 (19%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAGSI-----HKDSPTAKYLLER-GVERRDFNSYGSRRGNDEVMARGTFA 827
TTDHIS AG H D+ + L+ +E R NS
Sbjct: 562 KGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANS----------------- 604
Query: 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
V + E GP V D A YK G +++ YG GSSR+ +A
Sbjct: 605 ----VRNAVTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSREHSA 648
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED------ADSLGLTGHERFSID 941
P LG +A+I KSF RIH +NL G++PL F D D L + G + F+
Sbjct: 649 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPG 708
Query: 942 LPSK 945
P K
Sbjct: 709 KPLK 712
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 225/822 (27%), Positives = 341/822 (41%), Gaps = 155/822 (18%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVN 833
TTDHIS AG P K+ RG NI N
Sbjct: 562 KGKCTTDHISAAG------PWLKF-------------------------RGHLDNIS--N 588
Query: 834 KLLNGEVGPKT------VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
LL G + + + T E V D A YK G +++ YG GSSR+ A
Sbjct: 589 NLLIGAINSENRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHRA 648
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKIS 947
P LG +A+I KSF RIH +NL G++PL F + AD + ++ +I +
Sbjct: 649 LEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTI---QGLK 703
Query: 948 EIRPGQDVTVTTDSGKSFTCTVRFD---TEVELAYFDHGGIL 986
+ PG+ +T T+ + E ++ +F G L
Sbjct: 704 DFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 327/784 (41%), Gaps = 153/784 (19%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAGSI-----HKDSPTAKYLLER-GVERRDFNSYGSRRGNDEVMARGTFA 827
TTDHIS AG H D+ + L+ +E R NS
Sbjct: 561 KGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANS----------------- 603
Query: 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
V + E GP V D A YK G +++ YG G+SR+ +A
Sbjct: 604 ----VRNAVTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSA 647
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED------ADSLGLTGHERFSID 941
P LG +A+I KSF RIH +NL G++PL F D D L + G + F+
Sbjct: 648 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPG 707
Query: 942 LPSK 945
P K
Sbjct: 708 KPLK 711
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 327/784 (41%), Gaps = 153/784 (19%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 64 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 112
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 113 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 160
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 161 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 217
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 218 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 277
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 278 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 329
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 330 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 358
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 359 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 415
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 416 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 465
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 466 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 515
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 516 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 561
Query: 774 GDSITTDHISPAGSI-----HKDSPTAKYLLER-GVERRDFNSYGSRRGNDEVMARGTFA 827
TTDHIS AG H D+ + L+ +E R NS
Sbjct: 562 KGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANS----------------- 604
Query: 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
V + E GP V D A YK G +++ YG G+SR+ +A
Sbjct: 605 ----VRNAVTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGASREHSA 648
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED------ADSLGLTGHERFSID 941
P LG +A+I KSF RIH +NL G++PL F D D L + G + F+
Sbjct: 649 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPG 708
Query: 942 LPSK 945
P K
Sbjct: 709 KPLK 712
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 327/784 (41%), Gaps = 153/784 (19%)
Query: 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSEN 239
+P RV +QD T A+ L + + K+ VP + DH ++ + ++
Sbjct: 63 LRPDRVAMQDATAQMAM--LQFISSGLPKVA---------VPSTIHCDHLIEAQLGGEKD 111
Query: 240 AVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLY 299
+A N+E + FL + A + + PGSGI+HQ+ LE + G+L
Sbjct: 112 LRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGIIHQIILEN-----YAYPGVL- 159
Query: 300 PDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLPGVVGFKLSGKLHNGVTA 359
++GTDSHT M G P + P V+G KL+G L +
Sbjct: 160 ---LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSP 216
Query: 360 TDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419
D++L V +L G G VE+HG G+ +S ATI NM E GAT FP +H
Sbjct: 217 KDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMK 276
Query: 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPH 479
+YL TGR+D E F D+ P Y +E+NL++++P I+GP P
Sbjct: 277 KYLSKTGRADIANLADE--------FKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPD 328
Query: 480 DRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSC 539
P+ E+ G KE G P +++ + I SC
Sbjct: 329 LAHPVAEV---------------GSVAEKE-----------GWPLDIR-----VGLIGSC 357
Query: 540 TNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 599
TN+S + A VAK+A GL+ K + ++ PGS + + + G + L + G
Sbjct: 358 TNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVLRDVGGI 414
Query: 600 IVGYGCTTCIG--NSGDLDESVASTITDNDIVAAAVLSGNRNFEGR--VHPLTRANYLAS 655
++ C CIG + D+ + +TI V S NRNF GR +P T A ++ S
Sbjct: 415 VLANACGPCIGQWDRKDIKKGEKNTI---------VTSYNRNFTGRNDANPETHA-FVTS 464
Query: 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEI--AEVVQSSVLPDMFKS 713
P +V A A+AGT+ + + + + T KDGK FK P +E+ AE D +
Sbjct: 465 PEIVTALAIAGTLKFNPETDFL-TGKDGKK--FKLEAPDADELPRAEF-------DPGQD 514
Query: 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNF 773
TY+ K + P S+ + EP D ++D L+
Sbjct: 515 TYQHPPKDSSGQRVDVSPTSQRLQ-------LLEP-------FDKWDGKDLEDLQILIKV 560
Query: 774 GDSITTDHISPAGSI-----HKDSPTAKYLLER-GVERRDFNSYGSRRGNDEVMARGTFA 827
TTDHIS AG H D+ + L+ +E R NS
Sbjct: 561 KGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANS----------------- 603
Query: 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAA 887
V + E GP V D A YK G +++ YG GSS++ +A
Sbjct: 604 ----VRNAVTQEFGP------------VPDTARYYKQHGIRWVVIGDENYGEGSSQEHSA 647
Query: 888 KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED------ADSLGLTGHERFSID 941
P LG +A+I KSF RIH +NL G++PL F D D L + G + F+
Sbjct: 648 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPG 707
Query: 942 LPSK 945
P K
Sbjct: 708 KPLK 711
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 863 KSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 922
K G +I+AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+
Sbjct: 47 KKVKEGDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN 106
Query: 923 AGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDH 982
E D I EI ++ V T+ K+ C E E+
Sbjct: 107 TDEIKD---------------GDIVEIDLDKEEIVITNKNKTIKCETPKGLEREI--LAA 149
Query: 983 GGILPFV-IRNLIK 995
GG++ ++ R LI+
Sbjct: 150 GGLVNYLKKRKLIQ 163
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 868 GTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927
G +++AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL E
Sbjct: 52 GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLLGKTE-- 108
Query: 928 DSLGLTGHERFSIDLPSKISEIRPGQDV 955
GL + +++ + E+R G ++
Sbjct: 109 ---GLKDGDLVTVNWET--GEVRKGDEI 131
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 861 KYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 920
+Y+ A +I++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+
Sbjct: 82 EYREA---SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPI- 137
Query: 921 FKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVE 976
+ E D K+++++P +VTV K ++ F +++
Sbjct: 138 IQPKEVRD----------------KLAKLKPTDEVTVNLFEQKIYSPVGDFSFDID 177
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 863 KSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 916
K G II+ G +G GSSR+ A G G+ VIA+SF RI N + +G+
Sbjct: 49 KKVKPGDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 916
D + K + +I+++ +GSGSSR+ A + G++A+IA SF I ++N +G G+
Sbjct: 62 DFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGL 121
Query: 917 IPL 919
+ +
Sbjct: 122 LTI 124
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 868 GTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927
G++++AG ++G+GSSR+ A M G + VI+ F I R N G++ A E A
Sbjct: 65 GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL-----AAEVA 119
Query: 928 DSLGLTGHERFSIDLPSKISEIRPGQDVT 956
++L K+ E PG ++T
Sbjct: 120 QD---------DVELLWKLIEQSPGLEIT 139
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 136/385 (35%), Gaps = 98/385 (25%)
Query: 274 PGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 332
PG G++H +L R ML PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 333 LGQPMSMVLPGVVGFKLSGKLHNGVTATDLV------------LTVTQMLRKHGVVGKFV 380
+ M + +P V + GK+ G+T DLV LTV + +K+ G+ +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 381 EFHGDGMGELSLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 429
E +G+ +L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 430 -----ETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVP 483
+ +E +L ++ + + V ++++LAD+ EP + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEADADAEYAAV----IDIDLADIKEPILCAPNDPDDARP 693
Query: 484 LKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTS 543
L AV E ++V I SC
Sbjct: 694 LS-------------------AVQGEKIDEVF--------------------IGSCMTNI 714
Query: 544 NPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603
G L A K L + WV AP + + L + G + G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 604 GCTTCIGNSGDLDE--SVASTITDN 626
GC+ C+GN + + +V ST T N
Sbjct: 768 GCSLCMGNQARVADGATVVSTSTRN 792
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 867 HGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926
G++++AG ++G+GSSR+ A M G + VI+ F I R N G+ L + +D
Sbjct: 64 RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGL--LAAEVAQD 121
Query: 927 ADSLGLTGHERFSIDLPSKISEIRPGQDVT 956
++L K+ E PG ++T
Sbjct: 122 ------------DVELLWKLIEQSPGLEIT 139
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 867 HGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 917
G++++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 64 RGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 862 YKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVI-AKSFERIHRSNLVGMGIIPLC 920
++ G I AG Y G W +G LG K + KSFE+I +N+ I L
Sbjct: 440 FEGPAKGQIEEAGWSYVGG----WTGQGGSKLGSKRTLPKKSFEQIS-ANITKFNIQGLV 494
Query: 921 FKAGEDADSLGLT---GHERFS------IDLPSKISEIRPGQDVTVTTDSGKSFTCT 968
G +A + GL G ++F + +P+ +S PG D +V D+ + CT
Sbjct: 495 IIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICT 551
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 538 SCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574
S ++ SNP V L AGL+ A L + PW +S+A
Sbjct: 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 567 PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG-NSGDLDESVAST 622
P+ ++ SG + +GL +YL+ GFH+ Y +G +SG +DE +T
Sbjct: 32 PFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTT 88
>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
Length = 369
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 112 LPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLE-SAIRNCDN--FQVKKEDVEKIID 167
LP P G Y+L + N+ + KLP++I L++ S R+ D + KK+D+ +ID
Sbjct: 53 LPDPNDGSL---YTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVID 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,471,442
Number of Sequences: 62578
Number of extensions: 1298103
Number of successful extensions: 3006
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2928
Number of HSP's gapped (non-prelim): 45
length of query: 996
length of database: 14,973,337
effective HSP length: 108
effective length of query: 888
effective length of database: 8,214,913
effective search space: 7294842744
effective search space used: 7294842744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)