Query 001914
Match_columns 996
No_of_seqs 403 out of 2870
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-286 3E-291 2345.6 47.8 888 101-994 5-892 (892)
2 PLN00070 aconitate hydratase 100.0 2E-271 5E-276 2379.9 75.8 899 98-996 38-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 2E-267 4E-272 2343.9 74.2 895 91-996 4-898 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 5E-265 1E-269 2319.5 72.2 864 120-994 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 2E-263 4E-268 2312.9 73.2 876 102-995 3-889 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-262 2E-267 2301.4 75.5 875 102-996 4-888 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-258 6E-263 2253.8 70.8 834 120-995 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 1E-256 3E-261 2213.4 63.1 851 109-995 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 2E-177 5E-182 1566.9 58.6 697 158-989 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 2E-163 3E-168 1441.6 54.4 638 159-994 3-645 (646)
11 TIGR01342 acon_putative aconit 100.0 4E-161 9E-166 1418.8 53.6 644 160-995 1-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 3E-143 7E-148 1265.0 50.7 662 159-993 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 6E-141 1E-145 1251.2 50.1 686 158-992 34-751 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 2E-132 4E-137 1120.2 45.1 687 175-991 82-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 2E-129 5E-134 1084.7 36.0 400 184-668 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 3E-120 7E-125 1035.7 40.6 452 159-669 3-460 (465)
17 PRK12466 isopropylmalate isome 100.0 5E-120 1E-124 1035.1 40.7 453 158-669 3-462 (471)
18 PRK05478 isopropylmalate isome 100.0 2E-119 5E-124 1029.9 40.7 452 159-669 3-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 6E-120 1E-124 1037.5 32.0 457 160-666 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 9E-118 2E-122 1000.9 37.3 409 184-668 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 8E-114 2E-118 963.1 37.4 380 184-668 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 7E-113 1E-117 961.5 39.6 405 160-669 1-409 (412)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 3E-112 5E-117 956.9 39.2 405 159-669 1-408 (412)
24 cd01585 AcnA_Bact Aconitase ca 100.0 1E-112 3E-117 951.2 36.0 379 183-668 1-380 (380)
25 PRK00402 3-isopropylmalate deh 100.0 4E-112 8E-117 956.8 39.6 406 159-669 3-412 (418)
26 TIGR02083 LEU2 3-isopropylmala 100.0 3E-111 8E-116 947.1 40.1 409 159-669 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 3E-109 6E-114 907.2 36.6 410 159-669 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 4E-104 9E-109 893.3 37.0 402 162-668 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 8E-103 2E-107 866.4 35.6 361 184-668 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 4.5E-99 1E-103 850.2 35.9 388 184-668 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 3E-96 7E-101 870.1 39.8 410 156-669 368-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 5.1E-95 1.1E-99 857.2 41.5 408 157-669 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 5.1E-93 1.1E-97 837.6 39.0 410 156-669 441-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1.1E-67 2.3E-72 526.0 12.6 170 772-941 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 5.5E-50 1.2E-54 451.9 24.3 416 159-703 373-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 2.2E-43 4.8E-48 388.4 17.0 401 437-944 13-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 2.5E-39 5.5E-44 318.8 8.8 141 772-941 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 1.3E-35 2.9E-40 299.9 11.1 156 770-993 4-159 (163)
39 TIGR02087 LEUD_arch 3-isopropy 100.0 1.4E-35 3E-40 296.9 9.7 151 771-992 4-154 (154)
40 PRK14023 homoaconitate hydrata 100.0 2.5E-35 5.4E-40 298.3 11.2 155 770-993 4-158 (166)
41 TIGR02084 leud 3-isopropylmala 100.0 2.6E-35 5.5E-40 295.4 10.1 154 770-991 3-156 (156)
42 COG0066 LeuD 3-isopropylmalate 100.0 3.9E-35 8.4E-40 297.9 9.4 165 770-994 11-180 (191)
43 PLN00072 3-isopropylmalate iso 100.0 1.2E-33 2.6E-38 298.8 11.1 170 767-993 71-241 (246)
44 PF00694 Aconitase_C: Aconitas 100.0 1.2E-34 2.6E-39 282.6 1.8 128 796-923 3-130 (131)
45 cd01579 AcnA_Bact_Swivel Bacte 100.0 6.7E-32 1.5E-36 260.7 5.6 121 772-942 1-121 (121)
46 TIGR00171 leuD 3-isopropylmala 100.0 2E-31 4.2E-36 274.3 8.8 163 768-983 10-174 (188)
47 PRK01641 leuD isopropylmalate 100.0 9.3E-31 2E-35 271.8 9.2 160 767-983 9-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 99.9 6.3E-29 1.4E-33 228.5 5.3 73 869-942 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 2.2E-28 4.7E-33 223.6 6.2 71 869-941 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 5.3E-26 1.2E-30 272.1 12.4 164 763-994 165-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 1.4E-26 3.1E-31 223.3 4.2 100 773-923 2-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 2.4E-24 5.1E-29 238.7 5.3 418 159-667 67-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 1.3E-23 2.8E-28 204.9 6.5 67 869-941 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 8.2E-23 1.8E-27 244.3 11.5 164 763-994 166-343 (844)
55 PRK14812 hypothetical protein; 99.7 1.5E-18 3.3E-23 167.2 7.5 90 879-983 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.7 5.3E-18 1.2E-22 203.1 13.0 116 859-993 285-414 (938)
57 PF06434 Aconitase_2_N: Aconit 98.2 1.5E-06 3.3E-11 90.1 5.8 118 858-994 45-175 (204)
58 COG1049 AcnB Aconitase B [Ener 95.7 0.018 3.9E-07 68.7 6.7 117 859-992 214-342 (852)
59 PF04412 DUF521: Protein of un 95.3 0.044 9.5E-07 64.0 8.1 68 530-605 289-356 (400)
60 COG1679 Predicted aconitase [G 92.2 0.36 7.8E-06 55.6 7.3 69 529-605 288-356 (403)
61 cd01355 AcnX Putative Aconitas 86.8 1.4 3.1E-05 51.6 6.8 69 531-610 279-347 (389)
62 TIGR00829 FRU PTS system, fruc 25.6 55 0.0012 30.6 2.4 31 535-566 2-32 (85)
63 COG1445 FrwB Phosphotransferas 23.6 85 0.0019 31.6 3.5 33 533-566 4-36 (122)
64 PF00694 Aconitase_C: Aconitas 23.2 34 0.00074 34.6 0.7 28 769-808 11-38 (131)
65 PRK03600 nrdI ribonucleotide r 23.0 51 0.0011 33.3 1.9 28 613-640 56-86 (134)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-286 Score=2345.64 Aligned_cols=888 Identities=72% Similarity=1.200 Sum_probs=874.1
Q ss_pred cCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceEee
Q 001914 101 AEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPF 180 (996)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI~~ 180 (996)
+.+||+.+.++|+..++ .++||+|++|+ .++++||||||||||+++||||++.|++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 46899888899998764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhh
Q 001914 181 KPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLK 260 (996)
Q Consensus 181 ~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flk 260 (996)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||||+|+.++++|+++|+..||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEee
Q 001914 261 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 340 (996)
Q Consensus 261 w~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~ 340 (996)
|+.++|+|+.++|||+||+|||||||||||||++++++|||++|||||||||++|||++||||||||+|++|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHH
Q 001914 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQ 420 (996)
Q Consensus 341 vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~ 420 (996)
+|+|||++|+|+|.++||++||+|+||++||+.|++||||||||+|+++||+.||+||+||+||||||+||||+|+.|++
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhccccccc
Q 001914 421 YLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 500 (996)
Q Consensus 421 YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 500 (996)
||+.|||+++.++.+|.|+|+.++|+++..++.++.|++++++||++|+|+|+||+||||+++|++|+++|+.||++++|
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHH
Q 001914 501 FKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVV 580 (996)
Q Consensus 501 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V 580 (996)
+|||.++++.+.+...+.|+|++++|.||+|+||+|+||||||||++|++|+||||||+++|++|+||+||+++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHH
Q 001914 581 TKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 660 (996)
Q Consensus 581 ~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVa 660 (996)
+.||.++|++++|+++||.|+||||+|||||||+|++++.++|.+|++|+++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccccCC
Q 001914 661 AYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDP 740 (996)
Q Consensus 661 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~ 740 (996)
||||+|+++|||++||+|++++|+.|||+||||+++||+++++++|.|+||++.|+.|..|++.|++|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhh
Q 001914 741 NSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEV 820 (996)
Q Consensus 741 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~ev 820 (996)
+||||++||||++|+.+++++++|++|+||+.+||+||||||||||+|.++|||++||.+||++++|||||||||||+||
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEe
Q 001914 821 MARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 900 (996)
Q Consensus 821 m~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA 900 (996)
|.||||+|||+.|+|+. +.||.|+|+|+||.+.|||||++|+++|.|+||+||++||||||||||||+|.+||||||||
T Consensus 722 MaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAVia 800 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIA 800 (892)
T ss_pred hhcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHH
Confidence 99999999999999995 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHH
Q 001914 901 KSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYF 980 (996)
Q Consensus 901 ~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~ 980 (996)
||||||||+||++|||+||+|..++++++|+|+|.|+++|.+++. .++||+.|+|+.++|+.|++++|+||+.|+.||
T Consensus 801 eS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy 878 (892)
T KOG0452|consen 801 ESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYY 878 (892)
T ss_pred HHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEE
Confidence 999999999999999999999999999999999999999999984 399999999998899999999999999999999
Q ss_pred HhcChHHHHHHHHh
Q 001914 981 DHGGILPFVIRNLI 994 (996)
Q Consensus 981 ~aGGiL~yv~r~~~ 994 (996)
++||||||+.|++.
T Consensus 879 ~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 879 KNGGILNYMIRKLS 892 (892)
T ss_pred ecCCcHHHHHhhcC
Confidence 99999999999974
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=2.4e-271 Score=2379.91 Aligned_cols=899 Identities=92% Similarity=1.439 Sum_probs=858.9
Q ss_pred hhccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcce
Q 001914 98 TMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVE 177 (996)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~e 177 (996)
+|.+.++|...+++|+.+++++.|+||+|.++...++++|||||||||||+||||||+.|++++|++|++|......+.|
T Consensus 38 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~e 117 (936)
T PLN00070 38 SMASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVE 117 (936)
T ss_pred cccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCce
Confidence 34435788654478887622234999999998656799999999999999999999999999999999999876666789
Q ss_pred EeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhh
Q 001914 178 IPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFA 257 (996)
Q Consensus 178 I~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~ 257 (996)
|+|+|+||+||||||+|+++|||||||+++++|+||++|||.+|||||||||||+|++++++|+.+|+.+||+||.|||.
T Consensus 118 i~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~ 197 (936)
T PLN00070 118 IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFA 197 (936)
T ss_pred eccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcE
Q 001914 258 FLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 337 (996)
Q Consensus 258 flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~ 337 (996)
||||++++|+||+|+|||+|||||||+||||++|+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+
T Consensus 198 flkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~ 277 (936)
T PLN00070 198 FLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPM 277 (936)
T ss_pred hhhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999999999999
Q ss_pred EeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChh
Q 001914 338 SMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV 417 (996)
Q Consensus 338 ~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~ 417 (996)
||++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++
T Consensus 278 ~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~ 357 (936)
T PLN00070 278 SMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV 357 (936)
T ss_pred EeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccc
Q 001914 418 TLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDN 497 (996)
Q Consensus 418 T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~ 497 (996)
|++||+.|||++++++++++|+|+|+||+++..+|++|+|+++++||||+|||+||||++|||++||++++++|.+++..
T Consensus 358 T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~ 437 (936)
T PLN00070 358 TLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDN 437 (936)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcc
Confidence 99999999999999999999999999999766688999999999999999999999999999999999999999988876
Q ss_pred cccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCc
Q 001914 498 KVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGS 577 (996)
Q Consensus 498 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS 577 (996)
+++.+|+..+.++.....+++|+|+++++++|+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS 517 (936)
T PLN00070 438 KVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGS 517 (936)
T ss_pred cccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCC
Confidence 65555554333333333556789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChH
Q 001914 578 GVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 657 (996)
Q Consensus 578 ~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~ 657 (996)
++|++||+++||+++|+++||+|++||||+||||+++++++++++|.+|+++++||+|+||||+|||||.+++||||||+
T Consensus 518 ~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~ 597 (936)
T PLN00070 518 GVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPP 597 (936)
T ss_pred HHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccc
Q 001914 658 LVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYS 737 (996)
Q Consensus 658 lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~ 737 (996)
+||||||+|+|+||+++||+|++++|++|||+||||+.+||++++++.++|++|.+.|++++.+++.|++|++|++.+|+
T Consensus 598 lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~ 677 (936)
T PLN00070 598 LVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYS 677 (936)
T ss_pred HHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCc
Q 001914 738 WDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGN 817 (996)
Q Consensus 738 Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN 817 (996)
||++||||++||||++++..++.+.+|++||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||
T Consensus 678 wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN 757 (936)
T PLN00070 678 WDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGN 757 (936)
T ss_pred CCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCc
Confidence 99999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceE
Q 001914 818 DEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKA 897 (996)
Q Consensus 818 ~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkA 897 (996)
||||+||||+|+|++|+|++|++|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||||
T Consensus 758 ~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvka 837 (936)
T PLN00070 758 DEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKA 837 (936)
T ss_pred chhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHH
Q 001914 898 VIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVEL 977 (996)
Q Consensus 898 VIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~ 977 (996)
|||+||+||||+||+|||||||+|.++++++.+++.|++.++|++...+.+++||+.++++..+|++|++++++||+.|+
T Consensus 838 VIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~ 917 (936)
T PLN00070 838 VIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVEL 917 (936)
T ss_pred EEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHH
Confidence 99999999999999999999999999999999999999999999876666789999998877788999999999999999
Q ss_pred HHHHhcChHHHHHHHHhcC
Q 001914 978 AYFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 978 ~~~~aGGiL~yv~r~~~~~ 996 (996)
+||++|||||||+|++++|
T Consensus 918 ~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 918 AYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2e-267 Score=2343.95 Aligned_cols=895 Identities=69% Similarity=1.146 Sum_probs=850.9
Q ss_pred HHHHHhhhhccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhc
Q 001914 91 RLERAFATMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWEN 170 (996)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~ 170 (996)
.|.|.+|+. .++|....++|+ .+ +.|+||+|.++...+++||||||||||||+||||||..|++++|++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 345656652 378854337787 53 4799999999876679999999999999999999999999999999999987
Q ss_pred CCCCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHH
Q 001914 171 SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQ 250 (996)
Q Consensus 171 ~~~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~ 250 (996)
....+.||+|+||||+||||||+|+++|||||||+++++|+||.+|||.+||||+|||+||+++++..+++.+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHH
Q 001914 251 RNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 330 (996)
Q Consensus 251 rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea 330 (996)
||.|||+||||++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccc
Q 001914 331 AMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMG 410 (996)
Q Consensus 331 amlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g 410 (996)
+|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccc
Q 001914 411 FFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKAD 490 (996)
Q Consensus 411 ~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~ 490 (996)
|||+|++|++||+.|||++++++++++|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999899999999999999963 5789999999999999999999999999999999999999
Q ss_pred hhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee
Q 001914 491 WHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK 570 (996)
Q Consensus 491 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk 570 (996)
|.+++....+.+++++.+++.....++.++|+++++.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 88877654444455443332222234446888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCC
Q 001914 571 TSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA 650 (996)
Q Consensus 571 ~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~ 650 (996)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccC
Q 001914 651 NYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV 730 (996)
Q Consensus 651 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 730 (996)
||||||+|||||||+|+|+||+++||+|+|++|++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCcc
Q 001914 731 PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 810 (996)
Q Consensus 731 ~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fns 810 (996)
+++++|+||++||||++||||++++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcc
Q 001914 811 YGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (996)
Q Consensus 811 ygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~ 890 (996)
|||||||||||+||||+|+|++|+|+ |.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~ 794 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGP 794 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEec
Q 001914 891 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVR 970 (996)
Q Consensus 891 ~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~ 970 (996)
++||||||||+||+||||+||+|||||||+|.++++++.++++++++++|++... .++||++++++..+|++|+++++
T Consensus 795 ~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r 872 (898)
T PTZ00092 795 YLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILR 872 (898)
T ss_pred HHhCCcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999987321 58999999987788999999999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhcC
Q 001914 971 FDTEVELAYFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 971 ~~t~~e~~~~~aGGiL~yv~r~~~~~ 996 (996)
++|+.|++||++|||||||+|+++++
T Consensus 873 ~dt~~e~~y~~~GGiL~yv~~~~~~~ 898 (898)
T PTZ00092 873 IDTEVEVEYFKHGGILQYVLRKLVKG 898 (898)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999999763
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4.7e-265 Score=2319.53 Aligned_cols=864 Identities=65% Similarity=1.055 Sum_probs=825.9
Q ss_pred eeeEeecCCCC--CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceEeeccceeeeccCCchhHHH
Q 001914 120 FGKFYSLPALN--DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVV 197 (996)
Q Consensus 120 ~~~~~~l~~~~--~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa~v 197 (996)
.|+||+|.+|+ ..++++|||||||||||+||||||+.+++++|++|++|......+.||+|+|+||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 58999999985 3579999999999999999999999999999999999987666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 001914 198 DLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSG 277 (996)
Q Consensus 198 dlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~G 277 (996)
|||||||+++++|+||.+|||.+||+|+|||+||++.++..+++.+|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccceeeecCC----CcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccC
Q 001914 278 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 353 (996)
Q Consensus 278 I~HqV~lE~la~vv~~~~----G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L 353 (996)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHH
Q 001914 354 HNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA 433 (996)
Q Consensus 354 ~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~ 433 (996)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccc
Q 001914 434 MVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQE 512 (996)
Q Consensus 434 ~~~~y~k~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 512 (996)
++++|+|+|+||+ +| ++|.|+++++||||+|||+||||++|||++||++++++|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 9999999999995 34 689999999999999999999999999999999999998877654433333332111
Q ss_pred cceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHH
Q 001914 513 KVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKY 592 (996)
Q Consensus 513 ~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~ 592 (996)
...+.++|++..|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112256888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCC
Q 001914 593 LNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 672 (996)
Q Consensus 593 L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 672 (996)
|+++||+|++||||+||||+|+++++++++|.++++++++|||+||||+|||||.+++||||||+|||||||+|+|++|+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCC
Q 001914 673 DKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (996)
Q Consensus 673 ~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~ 752 (996)
++||+|.|++|++|||+||||+.+||++++...++++||.+.|.+++.+++.|++|++++++.|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhh
Q 001914 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (996)
Q Consensus 753 ~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~ 832 (996)
+++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcc
Q 001914 833 NKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 912 (996)
Q Consensus 833 N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli 912 (996)
|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~ 793 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLV 793 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChHHH
Q 001914 913 GMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT--DSG--KSFTCTVRFDTEVELAYFDHGGILPF 988 (996)
Q Consensus 913 ~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL~y 988 (996)
|||||||+|++++++++|+++|+|+|+|.... +++||++++++. .+| ++|++++++||+.|++||+|||||||
T Consensus 794 ~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~y 870 (876)
T TIGR01341 794 GMGVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQY 870 (876)
T ss_pred hcCcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999995332 579999888764 577 78999999999999999999999999
Q ss_pred HHHHHh
Q 001914 989 VIRNLI 994 (996)
Q Consensus 989 v~r~~~ 994 (996)
|+|+++
T Consensus 871 v~r~~~ 876 (876)
T TIGR01341 871 VLRKFL 876 (876)
T ss_pred HHHhhC
Confidence 999974
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.7e-263 Score=2312.88 Aligned_cols=876 Identities=58% Similarity=0.974 Sum_probs=831.3
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCC---CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceE
Q 001914 102 EHPFKEILTALPKPGGGEFGKFYSLPALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (996)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI 178 (996)
.++|. .+++|...+ +.|+||+|.+++ ..+++||||||||||||+||||||+.|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGG--KTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCC--eeEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 357787765 389999999985 247999999999999999999999999999999999998766667899
Q ss_pred eeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhh
Q 001914 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (996)
Q Consensus 179 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~f 258 (996)
+|+||||+|||+||+|+++|||||||+++++|+||.++||.+||+++|||+||+|.++..+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC----CCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcC
Q 001914 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 334 (996)
Q Consensus 259 lkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~----~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg 334 (996)
|||++++|.||+|+|||+|||||||+||||+||+.+ .|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccC
Q 001914 335 QPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPV 414 (996)
Q Consensus 335 ~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 414 (996)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++||||||||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhc
Q 001914 415 DHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSC 494 (996)
Q Consensus 415 De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~ 494 (996)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999974 58899999999999999999999999999999999999988876
Q ss_pred ccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEe
Q 001914 495 LDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574 (996)
Q Consensus 495 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~ 574 (996)
+..+.+.+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64322222211100 02345578899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceec
Q 001914 575 PGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLA 654 (996)
Q Consensus 575 PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLA 654 (996)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||+++++|||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred ChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCC
Q 001914 655 SPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASK 734 (996)
Q Consensus 655 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 734 (996)
||++||||||+|+|++|+++||+|+++||++|||+||||+.+|+++++++.++++||.+.|++++.+++.|++|++++++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCC
Q 001914 735 LYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSR 814 (996)
Q Consensus 735 ~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsr 814 (996)
+|+||++||||++||||+++..+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccC
Q 001914 815 RGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLG 894 (996)
Q Consensus 815 RgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lG 894 (996)
|||||||+||||+|+|++|+|+++.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEec
Q 001914 895 VKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVR 970 (996)
Q Consensus 895 VkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~ 970 (996)
|+||||+||+||||+||+|||||||+|++++++++|+++++|+++|+...+ .++||++++++ ..+| .+|+++++
T Consensus 787 v~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r 864 (889)
T PRK12881 787 VKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCR 864 (889)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999986542 58899988875 3566 67888999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhc
Q 001914 971 FDTEVELAYFDHGGILPFVIRNLIK 995 (996)
Q Consensus 971 ~~t~~e~~~~~aGGiL~yv~r~~~~ 995 (996)
++|+.|++||++|||||||++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.1e-262 Score=2301.44 Aligned_cols=875 Identities=61% Similarity=1.031 Sum_probs=834.2
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCC---CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceE
Q 001914 102 EHPFKEILTALPKPGGGEFGKFYSLPALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (996)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI 178 (996)
.++|.. +++|+..++ .|+||+|.+|+ ..++++|||||||||||+|||||++.+++++|++|++|.....++.||
T Consensus 4 ~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei 80 (888)
T PRK09277 4 TDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREI 80 (888)
T ss_pred CCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCcee
Confidence 356643 567777653 79999998874 347999999999999999999999999999999999998766677899
Q ss_pred eeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhh
Q 001914 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (996)
Q Consensus 179 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~f 258 (996)
+|+||||+||||||+|+++|||||||+++++|+||++|||.+||+||+||+||+++++..+++.+|+.+||+||.|||.|
T Consensus 81 ~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~f 160 (888)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQF 160 (888)
T ss_pred eeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC-CC--cccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCC
Q 001914 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 335 (996)
Q Consensus 259 lkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~-~G--~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~ 335 (996)
|||++++|.|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+||
T Consensus 161 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~ 240 (888)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 (888)
T ss_pred HHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcC
Confidence 999999999999999999999999999999999977 78 999999999999999999999999999999999999999
Q ss_pred cEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCC
Q 001914 336 PMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD 415 (996)
Q Consensus 336 ~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 415 (996)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (888)
T PRK09277 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPID 320 (888)
T ss_pred cEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcc
Q 001914 416 HVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCL 495 (996)
Q Consensus 416 e~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~ 495 (996)
++|++||+.|||++++++++|+|.|+|++|+ .+|++|.|+++++||||+|||+||||++|||++||++++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~---~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 321 EETLDYLRLTGRDEEQVALVEAYAKAQGLWR---DPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred hhHHHHHHhcCCChHHHHHHHHHHHHHhhhc---cCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 9999999999999999999999999999996 2588999999999999999999999999999999999999877653
Q ss_pred cccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEec
Q 001914 496 DNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAP 575 (996)
Q Consensus 496 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~P 575 (996)
+. +.+++ ..+..++|....|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 11221 12334678888999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecC
Q 001914 576 GSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLAS 655 (996)
Q Consensus 576 GS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLAS 655 (996)
||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|++++++|+|+||||+||||+..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCc
Q 001914 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKL 735 (996)
Q Consensus 656 P~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 735 (996)
|++||||||+|+|+||+++||+|++++|++|||+||||+.+||++++.+.+++++|.+.|++++.+++.|+++++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCC
Q 001914 736 YSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRR 815 (996)
Q Consensus 736 ~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrR 815 (996)
|+||++||||++||||++++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++||||||+||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998888778999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCc
Q 001914 816 GNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGV 895 (996)
Q Consensus 816 gN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGV 895 (996)
||||||+||||+|+|++|+|++|.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecC
Q 001914 896 KAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRF 971 (996)
Q Consensus 896 kAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~~ 971 (996)
+||||+||+||||+||+|||||||+|++++++++|+|+|+|+|+|.... +++||++++++ ..+| ++|++++++
T Consensus 787 ~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~ 863 (888)
T PRK09277 787 KAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRI 863 (888)
T ss_pred cEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999996433 47999988874 3566 789999999
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhcC
Q 001914 972 DTEVELAYFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 972 ~t~~e~~~~~aGGiL~yv~r~~~~~ 996 (996)
||+.|++||++|||||||+|+++++
T Consensus 864 dt~~Ei~y~~~GGiL~yv~r~~~~~ 888 (888)
T PRK09277 864 DTAVEVDYYRNGGILQYVLRDLLAS 888 (888)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999999999864
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=2.9e-258 Score=2253.85 Aligned_cols=834 Identities=45% Similarity=0.788 Sum_probs=794.8
Q ss_pred eeeEeecC-CCC---CCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceEeeccceeeeccCCchhH
Q 001914 120 FGKFYSLP-ALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPA 195 (996)
Q Consensus 120 ~~~~~~l~-~~~---~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa 195 (996)
.|+||+|. +|. ..++++|||||||||||+||||||+.++++ |++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 69999996 664 347999999999999999999999999999 9999999 34579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc-cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 001914 196 VVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP 274 (996)
Q Consensus 196 ~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~-~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~pp 274 (996)
++|||+|||+++++|+||++|||.+|||||||||||+|+++ +++|+.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCC
Q 001914 275 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLH 354 (996)
Q Consensus 275 G~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~ 354 (996)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHH
Q 001914 355 NGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 434 (996)
Q Consensus 355 ~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~ 434 (996)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccc
Q 001914 435 VEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKV 514 (996)
Q Consensus 435 ~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 514 (996)
+|+|.|+|++|++ +|++|+|+++++||||+|||+||+|++|||++||+|++..... .....
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~~---- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAEE---- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------ccccc----
Confidence 9999999999964 4679999999999999999999999999999999998752110 00000
Q ss_pred eeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHH
Q 001914 515 VKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLN 594 (996)
Q Consensus 515 ~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~ 594 (996)
..+| .+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCC
Q 001914 595 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 674 (996)
Q Consensus 595 ~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 674 (996)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+||+++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCCcC
Q 001914 675 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDM 754 (996)
Q Consensus 675 eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~ 754 (996)
||||.|+||++|||+||||+.+||++++++.++|++|++.|++++.+++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999998876 788889999999999999999999988
Q ss_pred CCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhh
Q 001914 755 TMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNK 834 (996)
Q Consensus 755 ~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~ 834 (996)
+.++.+|++||||+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhh
Q 001914 835 LLN--G--EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 910 (996)
Q Consensus 835 l~~--~--~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~N 910 (996)
|++ | .+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+|
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N 774 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTN 774 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhh
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChH
Q 001914 911 LVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT--DSG--KSFTCTVRFDTEVELAYFDHGGIL 986 (996)
Q Consensus 911 li~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL 986 (996)
|+|||||||+|.+++++++|+|+|.|+|+|. . +++||++++++. .+| .+|++++++||+.|++||+|||||
T Consensus 775 l~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL 849 (858)
T TIGR02333 775 LVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849 (858)
T ss_pred hhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHH
Confidence 9999999999999999999999999999983 2 478999888764 577 689999999999999999999999
Q ss_pred HHHHHHHhc
Q 001914 987 PFVIRNLIK 995 (996)
Q Consensus 987 ~yv~r~~~~ 995 (996)
|||+|+++.
T Consensus 850 ~~v~~~~~~ 858 (858)
T TIGR02333 850 QRFAQDFLE 858 (858)
T ss_pred HHHHHHhhC
Confidence 999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.3e-256 Score=2213.44 Aligned_cols=851 Identities=61% Similarity=1.018 Sum_probs=814.1
Q ss_pred cccccCCCCCceeeEeecCCCCCC-CCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceEeeccceeee
Q 001914 109 LTALPKPGGGEFGKFYSLPALNDP-RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLL 187 (996)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI~~~pdrvl~ 187 (996)
+++|..++ ..|+||+|+++... .+++||||+|||+||++|++|+ ++++++.++.|........||+|+|+||+|
T Consensus 6 ~~~~~~~~--~~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGG--KTYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCC--ceeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 45677765 48999999999653 7999999999999999999998 899999999998666667899999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccc
Q 001914 188 QDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFH 267 (996)
Q Consensus 188 qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~ 267 (996)
|||||+|+++|+|+||+++.++|+||.+|||.+||||+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecCcEEEE
Q 001914 268 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 347 (996)
Q Consensus 268 ~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV 347 (996)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHHhhcCC
Q 001914 348 KLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 427 (996)
Q Consensus 348 ~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR 427 (996)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCC
Q 001914 428 SDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVP 507 (996)
Q Consensus 428 ~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~ 507 (996)
++++++++|+|+++|+||++. +|++|+|+++++||||+|+|+||||++|||+++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999763 57899999999999999999999999999999999999998876543211
Q ss_pred ccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHc
Q 001914 508 KETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQS 587 (996)
Q Consensus 508 ~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~ 587 (996)
+..+...|+ ++.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|.+||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 111334455 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccc
Q 001914 588 GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (996)
Q Consensus 588 Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (996)
||+++|+++||++++|||||||||||+|++++++.|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccccCCCCccccC
Q 001914 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHE 747 (996)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~ 747 (996)
|++|+++||+|.+++|++|||+||||+.+||.+.+...+++++|.+.|.++++ |+.++++++++|.|+++||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhcccccc
Q 001914 748 PPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFA 827 (996)
Q Consensus 748 pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~ 827 (996)
||||+++...+.+ |+++|+|+++|||||||||||||+|+++||||+||.++|+++.|||+|||||||||||+|+||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998776544 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHh
Q 001914 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIH 907 (996)
Q Consensus 828 n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIh 907 (996)
|+|++|+|+++ +|++|+|+|+|+ |||+|++|+++|+|+|||||+|||+|||||||||++++|||+||||+||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIH 772 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIH 772 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHH
Confidence 99999999998 999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhc
Q 001914 908 RSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 908 r~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aG 983 (996)
|+||||||||||||++++++++|+++|.+.++|.+.+ .++|+.+++|+ ..|| .++.+.++++|+.|++||+||
T Consensus 773 rSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 773 RSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HhhcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcC
Confidence 9999999999999999999999999999999988765 67888887776 3566 678999999999999999999
Q ss_pred ChHHHHHHHHhc
Q 001914 984 GILPFVIRNLIK 995 (996)
Q Consensus 984 GiL~yv~r~~~~ 995 (996)
|||||++|++++
T Consensus 850 GiL~~v~~~~~~ 861 (861)
T COG1048 850 GILNYVKRDLLK 861 (861)
T ss_pred chHHHHHHHhhC
Confidence 999999999864
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=2.5e-177 Score=1566.86 Aligned_cols=697 Identities=29% Similarity=0.459 Sum_probs=597.7
Q ss_pred cHHHHHHHHhhhcCCC------------C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 001914 158 KKEDVEKIIDWENSAP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL 224 (996)
Q Consensus 158 ~~~~vekil~~~~~~~------------~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~l 224 (996)
.++.+||||+.+.+.. + +.+|.++|||||+||+||+|+++||++| |.+ ++..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 5789999999987633 2 3579999999999999999999998765 553 34455689
Q ss_pred EecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eE
Q 001914 225 VIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 303 (996)
Q Consensus 225 viDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tv 303 (996)
++||++|++.... .|+..+++||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 457788999999999999999999 8999999999999999995 55786 69
Q ss_pred eecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEe
Q 001914 304 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFH 383 (996)
Q Consensus 304 VGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~ 383 (996)
|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCChhhhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHH-HHHHHHHHhhccccCCCCCCCCcccEEEE
Q 001914 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRANKMFVDYNEPQQERVYSSYLE 462 (996)
Q Consensus 384 G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~-~~~~y~k~~~l~~~~~~~D~~a~Y~~~ie 462 (996)
||||++||+++|||||||++|+|||+||||+||+|++||+.+||+++..+ .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875422 2233221 233 5799999999999
Q ss_pred EEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCC
Q 001914 463 LNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNT 542 (996)
Q Consensus 463 iDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~ 542 (996)
||||+|||+||+|++|||++||+|+++++++ .|++ ..|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1121 14789999999999
Q ss_pred CChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhcc
Q 001914 543 SNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVAST 622 (996)
Q Consensus 543 s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~ 622 (996)
|+|||+.||.+ +|+|++ ++++|.|+++|+|||++|++||+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA~i-lk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCASI-VKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHHHH-hhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 99997666655 577754 566788999999999999999999999999999999999999999999987542 1
Q ss_pred ccCCCeeEEeeeccCCCCCCCCCC-ccCCceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHH
Q 001914 623 ITDNDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEV 701 (996)
Q Consensus 623 i~~~~~~~~sVsS~NRNF~GR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~ 701 (996)
+.+|+.+ ++|||+||||+||||+ ..+.+|||||++||||||+|+|++|+++||+ .+++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4557754 5799999999999954 4578999999999999999999999999999 69999999999 8999998875
Q ss_pred hhccCCcchhhcccccccCCCCCcccccCC--CCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCc
Q 001914 702 VQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITT 779 (996)
Q Consensus 702 ~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itT 779 (996)
+| ..++..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||||||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcCh
Confidence 22 2345667766553 56789999999999999999653 45789999999999999999
Q ss_pred CccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcC--CCCCC--ceeecCCCcccch
Q 001914 780 DHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP--KTVHVPTGEKLSV 855 (996)
Q Consensus 780 DhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~--~~~g~--~t~~~p~g~~~~v 855 (996)
||||||| .||.++ |+|.|++ .|.|.. +.+++ .|.+.|+|+.+++
T Consensus 563 DHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 9999998 589874 4555555 555542 12233 5778889999999
Q ss_pred hchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCC
Q 001914 856 FDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGH 935 (996)
Q Consensus 856 ~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~ 935 (996)
+++|++|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .+
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~--~g 688 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ--PG 688 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888765 34
Q ss_pred eEEEEe-cCCccccCCC---CceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHH
Q 001914 936 ERFSID-LPSKISEIRP---GQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFV 989 (996)
Q Consensus 936 e~~~Id-l~~~~~~l~~---g~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv 989 (996)
+.+++. +. ++.| ++.+++. ..+| .+|.+++++ |+.|++||++||+|||+
T Consensus 689 d~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 689 DEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred CEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 555543 43 3344 6667653 3455 778888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.5e-163 Score=1441.61 Aligned_cols=638 Identities=34% Similarity=0.527 Sum_probs=557.4
Q ss_pred HHHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
++.+||||+.+.... .+.+|.++||||++||+||++++++|++| |.++. .+|.. + +++||+++...
T Consensus 3 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~~-~~p~~-~-~~~DH~~~~~~- 71 (646)
T PRK07229 3 LTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDRV-KTELS-V-QYVDHNLLQAD- 71 (646)
T ss_pred cCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCcC-CCCCe-E-EECCCCCCCCC-
Confidence 678999999986643 56689999999999999999999999776 87653 34432 2 48999888753
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCc
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDG 315 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~Ga 315 (996)
.||.++|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+||
T Consensus 72 --------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~Ga 127 (646)
T PRK07229 72 --------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTAGG 127 (646)
T ss_pred --------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcCCc
Confidence 58999999999999999 8999999999999999996654 33 689999999999999
Q ss_pred cccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001914 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||+++|
T Consensus 128 lG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 207 (646)
T PRK07229 128 LGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPER 207 (646)
T ss_pred ccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCC
Q 001914 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
+|||||++|+|||+||||+|++|++||+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 208 ~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~-----------~l----~~D~~a~Y~~~i~iDLs~leP~va~P 272 (646)
T PRK07229 208 ATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV-----------EL----LADPDAEYDEVIEIDLSELEPLIAGP 272 (646)
T ss_pred hhhhccccccCceEEEecCcHHHHHHHHhcCCcccce-----------ec----cCCCCCCeeEEEEEEccceeeeeecC
Confidence 9999999999999999999999999999999876531 11 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001914 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLa 555 (996)
++|||++||+|+++. .|++||||||||||+||+++||+||
T Consensus 273 ~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~iL- 312 (646)
T PRK07229 273 HSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASIL- 312 (646)
T ss_pred CCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHHh-
Confidence 999999999998631 2789999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001914 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS 635 (996)
+|+||+||||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++. + .++++ +|+|
T Consensus 313 -----~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~-------~~~~~---~vst 376 (646)
T PRK07229 313 -----KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-P-------ATGNV---SLRT 376 (646)
T ss_pred -----cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-C-------CCCcE---EEEc
Confidence 899999999999999999999999999999999999999999999999998543 2 23554 7899
Q ss_pred cCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhccc
Q 001914 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTY 715 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y 715 (996)
+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.+
T Consensus 377 ~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~-- 440 (646)
T PRK07229 377 FNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA-- 440 (646)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC--
Confidence 9999999999988899999999999999999999 999999987 8999997 7882 2234444432
Q ss_pred ccccCCCCCcccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhh
Q 001914 716 EAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTA 795 (996)
Q Consensus 716 ~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag 795 (996)
.++.|++++++. ++||+++|+|+++ .++.++++|+++|||||||||||+|.
T Consensus 441 -----~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~-------- 491 (646)
T PRK07229 441 -----PAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA-------- 491 (646)
T ss_pred -----CCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc--------
Confidence 345677766553 5788888888654 47999999999999999999999974
Q ss_pred hHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCC
Q 001914 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (996)
Q Consensus 796 ~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~ 875 (996)
+||+ +|+|+|+|.+++|.+.+ |.+ +.+++..+ ++|||||+
T Consensus 492 ~~l~--------------~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVaG~ 531 (646)
T PRK07229 492 KWLP--------------YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVGGE 531 (646)
T ss_pred chhc--------------cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEecC
Confidence 4765 37899999999998642 322 23566554 78999999
Q ss_pred ccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEE-ecCCccccCCCCce
Q 001914 876 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSI-DLPSKISEIRPGQD 954 (996)
Q Consensus 876 nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~I-dl~~~~~~l~~g~~ 954 (996)
|||||||||||||+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+|+++| ++.+ +.++.+
T Consensus 532 nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~~~~ 605 (646)
T PRK07229 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLPGGP 605 (646)
T ss_pred ccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCCCCe
Confidence 9999999999999999999999999999999999999999999999877777765 45788998 6653 456666
Q ss_pred EEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 955 VTVTT-DSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 955 v~v~~-~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
|+++. .+|++|+++.++ ++.|++|+++||||||+++++.
T Consensus 606 v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 606 LTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 66643 456889988887 9999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=4e-161 Score=1418.75 Aligned_cols=644 Identities=32% Similarity=0.491 Sum_probs=550.5
Q ss_pred HHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001914 160 EDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 160 ~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (996)
+.+|||++.+.... .+.+|.++||||++||+||+|++++|++| |.+ ++.|.+ +.+++||+++...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 36899999986643 45689999999999999999999998776 543 344554 5689999988753
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcc
Q 001914 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGL 316 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~Gal 316 (996)
.||.|+|+|++|.+++| ++.|+|||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 16789999999999998 5689999999999999996654 33 6899999999999999
Q ss_pred ccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhh
Q 001914 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRA 396 (996)
Q Consensus 317 G~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRa 396 (996)
|+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+||||++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCC
Q 001914 397 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPK 476 (996)
Q Consensus 397 TIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~ 476 (996)
|||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998664321 1 479999999999999999999999999
Q ss_pred CCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHH
Q 001914 477 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 556 (996)
Q Consensus 477 ~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak 556 (996)
+|||++||+|++. . .|+++|||||||+|++||++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999763 1 2568999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeecc
Q 001914 557 KACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSG 636 (996)
Q Consensus 557 ~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~ 636 (996)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ . ++++ +|||+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~-~-------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP-A-------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC-C-------CCcE---EEEcc
Confidence 8999999999999999999999999999999999999999999999999996543 2 2443 78999
Q ss_pred CCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccC-CCChHHHHHHhhccCCcchhhccc
Q 001914 637 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI-WPTTEEIAEVVQSSVLPDMFKSTY 715 (996)
Q Consensus 637 NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wP~~~ei~~~~~~~v~~~~f~~~y 715 (996)
||||+||||+..+.+|||||++||||||+|+| .|+.. ++. .+| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 45542 322 234 44 886652 45565556
Q ss_pred ccccCCCCCcccccC---CCCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCC
Q 001914 716 EAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDS 792 (996)
Q Consensus 716 ~~i~~~~~~w~~l~~---~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~s 792 (996)
.+++ |+.++. ++.+++. ++||++||+|++++ .+|++ |+++++|||||||||+|||.
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~----- 493 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGA----- 493 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCc-----
Confidence 5443 766654 3344443 89999999998774 45777 99999999999999999975
Q ss_pred hhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEE
Q 001914 793 PTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIIL 872 (996)
Q Consensus 793 pag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIV 872 (996)
.||.. |+|.+.+.+.+|...+ .+ +.+++++|++.+.++|||
T Consensus 494 ---~~l~~--------------r~~~~~l~~~~~~~~~-------------------p~---f~~~~~~~~~~~~~~iiV 534 (658)
T TIGR01342 494 ---DILKF--------------RSNIEAISEFTLHRID-------------------DE---FAERAKAADEKGKAGIII 534 (658)
T ss_pred ---ccccc--------------CCCHHHHhhheeeCCC-------------------ch---HHHHhhcccccCCceEEE
Confidence 24422 7788888888886421 11 236788999999999999
Q ss_pred eCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEe--cCCccccCC
Q 001914 873 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSID--LPSKISEIR 950 (996)
Q Consensus 873 AG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Id--l~~~~~~l~ 950 (996)
||+|||||||||||||++++|||+||||+||+||||+||+|+|||||+|+++++++.+.. +++++|+ +.+ .++
T Consensus 535 aG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~~ 609 (658)
T TIGR01342 535 AGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---ALA 609 (658)
T ss_pred cCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hcC
Confidence 999999999999999999999999999999999999999999999999998888887654 6777887 554 478
Q ss_pred CCceEEEE-cCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHhc
Q 001914 951 PGQDVTVT-TDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 995 (996)
Q Consensus 951 ~g~~v~v~-~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~~ 995 (996)
||++..+. ..+|.++.+...+ ++.|++|+++||||||++++..+
T Consensus 610 ~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 610 DGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred CCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 88654443 3566666665443 89999999999999999998653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=3.2e-143 Score=1264.99 Aligned_cols=662 Identities=25% Similarity=0.359 Sum_probs=502.6
Q ss_pred HHHHHHHHhhhc-----CC--CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001914 159 KEDVEKIIDWEN-----SA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 159 ~~~vekil~~~~-----~~--~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~ 231 (996)
++.+|||++.+. +. ..+.+|.++||++|+||.|+++++ +|. ++|.+ ...+|+. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 567899999886 32 245679999999999999999753 343 35764 5668865 6789999999
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001914 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
..... .+ +.|+|++-..++| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~--~~-------------~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK--NL-------------KKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH--HH-------------HHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 87532 22 2233332222333 578899999999999999 8999997 579999999
Q ss_pred cccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEec--CccC
Q 001914 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHG--DGMG 388 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G--~Gv~ 388 (996)
||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccCcccccccccccCChhHHHHHhhcCCCch--------HHHHHHHHHH---HhhccccCCCCCCCCcc
Q 001914 389 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAMVEGYLR---ANKMFVDYNEPQQERVY 457 (996)
Q Consensus 389 ~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~--------~~~~~~~y~k---~~~l~~~~~~~D~~a~Y 457 (996)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. ...+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999876311 0011112211 011111 2368999999
Q ss_pred cEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEee
Q 001914 458 SSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAIT 537 (996)
Q Consensus 458 ~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~Ig 537 (996)
+++++||||+|+|+||+|++|++++|++++... | -.|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------------------------~-------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------------------------D-------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------------------------C-------ceeeeEEEe
Confidence 999999999999999999999999999987320 0 136799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhCC---CccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCC
Q 001914 538 SCTNTSNPSVMLGAGLVAKKACELG---LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD 614 (996)
Q Consensus 538 SCTN~s~~dl~~aA~lLak~A~~kG---~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~ 614 (996)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|++|||.|.+|||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7999999999999999999999999999999999999999999999999988
Q ss_pred CChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCC
Q 001914 615 LDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 694 (996)
Q Consensus 615 l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~ 694 (996)
+.++ +++ +|+|+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +-||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 7544 454 68999999999999888899999999999999999995 4432210 0 00221
Q ss_pred h--H---HHHHHhhccCCcchhhcccccc---cCCCCCcccccCCCCCccccCCCCcccc--CCCCCCcCCCCCCCCCCc
Q 001914 695 T--E---EIAEVVQSSVLPDMFKSTYEAI---TKGNPTWNQLSVPASKLYSWDPNSTYIH--EPPYFKDMTMDPPGAHGV 764 (996)
Q Consensus 695 ~--~---ei~~~~~~~v~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~Wd~~styi~--~pp~f~~~~~~~~~~~~i 764 (996)
. . .+.......++.+++.+.-..+ ....+.-.+...|. +.-+. ..|.++++ .+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILEGF-------PEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCCCC-------Cce
Confidence 0 0 0000000112223331110000 00000001111111 11111 12222222 334
Q ss_pred ccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCce
Q 001914 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (996)
Q Consensus 765 ~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t 844 (996)
...+++++.|||||||||+|+ +||....+ ..|.|.+..|.+.+
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~-------------~~~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPG----------KYTYQDDV-------------PKEKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccch----------hhcccCCC-------------CHHHHHHhhccCCC--------------
Confidence 455899999999999999998 78742112 23467777887543
Q ss_pred eecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCc
Q 001914 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAG 924 (996)
Q Consensus 845 ~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~ 924 (996)
| +.+.+++. +.|||||+|||||||||||+++++.+||+||||+||+|||+||+||+|||||+|++-
T Consensus 574 ---p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~~ 639 (712)
T TIGR00139 574 ---A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPAL 639 (712)
T ss_pred ---c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchhH
Confidence 1 12234443 479999999999999999999999999999999999999999999999999999852
Q ss_pred cchhhcc---------C--CCCeEEEEecCCccccCCCCceEEEEcCC----CeEEEEEecCCCHHHHHHHHhcChHHHH
Q 001914 925 EDADSLG---------L--TGHERFSIDLPSKISEIRPGQDVTVTTDS----GKSFTCTVRFDTEVELAYFDHGGILPFV 989 (996)
Q Consensus 925 ~~~~~l~---------l--~g~e~~~Idl~~~~~~l~~g~~v~v~~~~----G~~f~~~~~~~t~~e~~~~~aGGiL~yv 989 (996)
.+.|. + ..+++++||+..+ .|++ ..+ +++++..+...++..++++.+|||++|+
T Consensus 640 --~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~ 708 (712)
T TIGR00139 640 --IKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWV 708 (712)
T ss_pred --HHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHH
Confidence 23222 1 2467888988752 4444 222 2334445444588999999999999999
Q ss_pred HHHH
Q 001914 990 IRNL 993 (996)
Q Consensus 990 ~r~~ 993 (996)
++++
T Consensus 709 k~~~ 712 (712)
T TIGR00139 709 KNAI 712 (712)
T ss_pred HhcC
Confidence 9874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=5.7e-141 Score=1251.24 Aligned_cols=686 Identities=22% Similarity=0.283 Sum_probs=515.5
Q ss_pred cHHHHHHHHhhhcCCCCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 001914 158 KKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (996)
Q Consensus 158 ~~~~vekil~~~~~~~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~ 237 (996)
+++.+||||+.+.+...+..|.+++|++++||.|+++++..|.+| |.+ ++ | +|+.+++||+++....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~~-------G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKAS-------GME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHHc-------CCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 467899999999776666679999999999999999888777554 874 44 4 578999999999874333
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcc
Q 001914 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 316 (996)
Q Consensus 238 ~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Gal 316 (996)
. |.+.|.|++...++| ++.|+|||+||||||++|+|+ .| +++|||||||| +|||
T Consensus 103 ~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 I-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred c-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 2 223444554444455 457999999999999999554 56 58999999996 8999
Q ss_pred ccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCc-ceeEEEEecCccCCCChhhh
Q 001914 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGV-VGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 317 G~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gv-vgk~VEF~G~Gv~~LS~~dR 395 (996)
|+|||||||+|++++|+|+++|+++||+|+|+|+|+|++||+||||||+|++.|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCC
Q 001914 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
||||||++|+|||+||||+|++|++||+.++|.+++.+ | .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999998764311 1 57999999999999999999999999
Q ss_pred CCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCccccc--CccEEEEEeecCCCCCChHHHHHHHH
Q 001914 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~--~g~V~ia~IgSCTN~s~~dl~~aA~l 553 (996)
++|||++||+|+.+++.++++.. +.++..+ ......+++.+ .+. .-.|+|||||||||||++|++.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~---ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLLD---KIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccccc---cccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998888776642 1111110 00011111110 122 23688999999999999999999999
Q ss_pred HHHHHHhCCCccC-CceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001914 554 VAKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 554 Lak~A~~kG~kV~-p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~s 632 (996)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. ++++ +
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---E
Confidence 9 899998 579999999999999999999999999999999999999999998644 32 3554 6
Q ss_pred eeccCCCCCCCCCCccCC-----ceecChHHHHHHHhc-cccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccC
Q 001914 633 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSV 706 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v 706 (996)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +.. .+.+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---Cccc
Confidence 899999999999998886 677778989999998 6996 4543320 11 100 1234
Q ss_pred Ccchhh-cccccccCCCCCcccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCC-cCcccc
Q 001914 707 LPDMFK-STYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSIT-TDHISP 784 (996)
Q Consensus 707 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~it-TDhIsP 784 (996)
+..+|. ..|....... .+++ +..-|.|++++... ++.+-...+|++|+||||| ||||+|
T Consensus 497 ~~~~y~~~~~~~~~~~~---~~~~---------------~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGKGA---TQQP---------------LIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCCCC---Ccce---------------EEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCcccccccc
Confidence 444443 2332111111 1122 22222333332211 2234445689999999997 999999
Q ss_pred CCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCC--CCceeecCCC---cccchhchH
Q 001914 785 AGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEV--GPKTVHVPTG---EKLSVFDAA 859 (996)
Q Consensus 785 aG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~--g~~t~~~p~g---~~~~v~daA 859 (996)
|| +||.+ |||.+.+...+|... .|.+..... ........+| +...+|+.+
T Consensus 558 aG---------~~l~~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~~~~~~~~~~g~~~~~~~~~~~~ 612 (751)
T PRK11413 558 SG---------ETSSY--------------RSNPLGLAEFTLSRR--DPGYVGRSKAVAELENQRLAGNVSELTEVFARI 612 (751)
T ss_pred CC---------Ccccc--------------ccCHHHHhhhhcccc--ChhhHHHHHHHhhhhhhhhcCCcHHHHHHHHhh
Confidence 98 56664 678888888887432 233321000 0000000112 122223222
Q ss_pred H--------HHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhH-hhhhcccCcccceeccCccchhhc
Q 001914 860 M--------KYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKAGEDADSL 930 (996)
Q Consensus 860 ~--------~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RI-hr~Nli~~GiLpL~f~~~~~~~~l 930 (996)
. .|++.|.++||++ .||||||||||||.++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 613 ~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~----- 686 (751)
T PRK11413 613 KQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP----- 686 (751)
T ss_pred hhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh-----
Confidence 1 1255676655555 99999999999999999999999999999999 6669999999999998642
Q ss_pred cCCCCeEEEEecCCccccCC-CCceEE--EEcCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001914 931 GLTGHERFSIDLPSKISEIR-PGQDVT--VTTDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 931 ~l~g~e~~~Idl~~~~~~l~-~g~~v~--v~~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~ 992 (996)
.+..++.++|+.... .++ ++..++ +...+| +.+++.+...++.|++|+++||+|||++++
T Consensus 687 ~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~~ 751 (751)
T PRK11413 687 TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKNR 751 (751)
T ss_pred hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhcC
Confidence 356678899986532 233 233333 333443 455666533499999999999999999863
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-132 Score=1120.20 Aligned_cols=687 Identities=31% Similarity=0.487 Sum_probs=566.9
Q ss_pred cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhh
Q 001914 175 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKE 254 (996)
Q Consensus 175 ~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~e 254 (996)
+..+.++||||+|||.|..|++++|.. .|... + .+|..+++||.+.+...+..| +.+..+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k--v--avPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK--V--AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHHh-------cCccc--c--cCCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 457999999999999999999999854 36543 2 246789999998887666544 5566789999
Q ss_pred hhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCccccccccCCHHHHHHHHc
Q 001914 255 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 333 (996)
Q Consensus 255 ry~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaeaaml 333 (996)
.|.||..+.++| |+.||+||+||+|||+|| + ++||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999998776 799999999999999999 4 66886 68999999999999999999999999999999
Q ss_pred CCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCccccccccccc
Q 001914 334 GQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP 413 (996)
Q Consensus 334 g~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp 413 (996)
++||.++.|+|+||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhh
Q 001914 414 VDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHS 493 (996)
Q Consensus 414 ~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~ 493 (996)
.|+.+++||+.|||.+. .+..++|+++ +. .+|++|.|+++|+||||+|+|+|.||++|+-..|++++.+...
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999874 3444555554 22 5899999999999999999999999999999999998875211
Q ss_pred cccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEE
Q 001914 494 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 573 (996)
Q Consensus 494 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v 573 (996)
. +||+.. |..++||||||+||+|+-.+|.+ +++|..+|+ +|.|.+.|
T Consensus 367 -------k------------------n~wp~~-----i~~gligSCTNSsyeDm~raa~i-v~~a~~~gl--k~~v~F~V 413 (778)
T KOG0453|consen 367 -------K------------------NGWPIK-----IKVGLIGSCTNSSYEDMSRAADI-VKQAKGKGL--KPKVPFYV 413 (778)
T ss_pred -------h------------------cCCcee-----eeeeEEEeecCccHHHHHHHHHH-HHHHHhcCC--CCCcceEe
Confidence 0 345543 45689999999999998888876 488877776 56699999
Q ss_pred ecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCcc-CCce
Q 001914 574 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANY 652 (996)
Q Consensus 574 ~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~-~~~Y 652 (996)
+|||.+|+..+++.|+++.|+++|+.+.+.+||||||++..- -|++||.- +.|+|.||||.||++.+. ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~------dvk~GE~n-tivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc------cccCCCcC-ceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999998551 13445542 347999999999997554 5679
Q ss_pred ecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCC
Q 001914 653 LASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (996)
Q Consensus 653 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (996)
|+||++|+|+||+|++.++++++.+ ..++|+.+.|+- |..+|+.+ +.++|.. ..|+. -+.+.
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g~--~ty~a----------p~~~~ 548 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPGQ--DTYQA----------PPSSS 548 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCCc--ccccC----------CCCCC
Confidence 9999999999999999999999888 567899988765 67776543 2233321 12321 11111
Q ss_pred -CCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccc
Q 001914 733 -SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSY 811 (996)
Q Consensus 733 -~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsy 811 (996)
.....-|++|+.++....|+. +.-+|+++..+|+++..+|||||||-|| .||+++|+-+.-.|.+
T Consensus 549 ~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaG---------pwlkY~Ghl~nisnn~ 614 (778)
T KOG0453|consen 549 SVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAG---------PWLKYRGHLENISNND 614 (778)
T ss_pred CcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCC---------cceeccchhhhcccch
Confidence 123456889998887777764 4457899999999999999999999998 5999988655444432
Q ss_pred cCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhccc
Q 001914 812 GSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPM 891 (996)
Q Consensus 812 gsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~ 891 (996)
---.=|-|.|- .| ...+..+||.+.+.+.++.||+.|++||+|++.|||.||||||||..|+
T Consensus 615 ~igain~En~e---------~n---------~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr 676 (778)
T KOG0453|consen 615 LIGAINKENGE---------AN---------CVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPR 676 (778)
T ss_pred hhhhcchhhhh---------hh---------hhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchh
Confidence 10011222221 11 1223357888889999999999999999999999999999999999999
Q ss_pred ccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCCeEEEEEe
Q 001914 892 LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSGKSFTCTV 969 (996)
Q Consensus 892 ~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~--~~~G~~f~~~~ 969 (996)
.||+++||.+||+|||.+||+++|+|||+|.++.+|+++. ..+.+++. ++.++.||.++++. ..+|++++.++
T Consensus 677 ~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~L~~~~~gkp~t~~vt~~dg~~~~~kl 751 (778)
T KOG0453|consen 677 HLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---GLTRRTPGKPLTVVVTKKDGKEVEIKL 751 (778)
T ss_pred hcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---hhhhhcCCCceeEEEECCCCcEEEEec
Confidence 9999999999999999999999999999999999999863 33444443 23366788877664 45788888887
Q ss_pred cCC-CHHHHHHHHhcChHHHHHH
Q 001914 970 RFD-TEVELAYFDHGGILPFVIR 991 (996)
Q Consensus 970 ~~~-t~~e~~~~~aGGiL~yv~r 991 (996)
.+. +..|++|+++|..|+++++
T Consensus 752 ~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 752 NHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred ccccchhhhHhhhcchHHHHHHH
Confidence 654 8899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.2e-129 Score=1084.71 Aligned_cols=400 Identities=77% Similarity=1.209 Sum_probs=388.7
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001914 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
||+|||+||+|+++|||+|||+++++|+||+++||.+|++|++||++|++..+..++..+|+.++++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeec----CCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEe
Q 001914 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 339 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HqV~lE~la~vv~~----~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~ 339 (996)
++|.|++++|||+||||||++|+||++++. ++|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3689999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHH
Q 001914 340 VLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419 (996)
Q Consensus 340 ~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~ 419 (996)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccc
Q 001914 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 499 (996)
Q Consensus 420 ~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~ 499 (996)
+++++||||+|||+||+|++|+|++||..
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------- 265 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------- 265 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC-------------
Confidence 56799999999999999999999999821
Q ss_pred cCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHH
Q 001914 500 GFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGV 579 (996)
Q Consensus 500 ~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~ 579 (996)
+|++||||||||+|+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 266 ------------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 266 ------------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred ------------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHH
Q 001914 580 VTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 659 (996)
Q Consensus 580 V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lV 659 (996)
|+++|+++||+++|+++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHhcccc
Q 001914 660 VAYALAGTV 668 (996)
Q Consensus 660 aA~AlaG~I 668 (996)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=3.2e-120 Score=1035.69 Aligned_cols=452 Identities=25% Similarity=0.370 Sum_probs=396.1
Q ss_pred HHHHHHHHhhhcCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc--
Q 001914 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~-- 235 (996)
++.+|||++.+.... .+..+.++|||+++||+|+++++.. ||+ +|. ..++|. ++++++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~---~~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~~ 72 (465)
T TIGR00170 3 RTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEG---LRQ----AGR--KVRRPQ-KTFATMDHNIPTQNRDF 72 (465)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHH---HHH----cCC--CcCCCc-CEEEEeCCCCCCCCccc
Confidence 678999999987654 4566889999999999999999744 433 363 355665 589999999999763
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~G 135 (465)
T TIGR00170 73 NIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (465)
T ss_pred cccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCccccc
Confidence 46677889999999999999875 2 245678999999999999 899999 68999999999999
Q ss_pred ccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001914 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+|+||++||+++
T Consensus 136 alGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~ 215 (465)
T TIGR00170 136 AFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEG 215 (465)
T ss_pred cccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecC
Q 001914 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|||||||++|+||++||||+|++|++||+.+++.+. .++|.+++++|+.. .+|++|.|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~ 290 (465)
T TIGR00170 216 RMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVTW 290 (465)
T ss_pred hhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeecC
Confidence 999999999999999999999999999998876543 37788999999753 5899999999999999999999999
Q ss_pred CCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 001914 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~ia~IgSCTN~s~~dl~~aA~ 552 (996)
|++|+|++||+|+.+++....+.. ++......++|+|... .+.++.|++||||||||||++||+.||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~ 360 (465)
T TIGR00170 291 GTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAA 360 (465)
T ss_pred CCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999877655432210 1111112333444322 3668899999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001914 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~s 632 (996)
+| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++ +
T Consensus 361 vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~ 424 (465)
T TIGR00170 361 VI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER---C 424 (465)
T ss_pred Hh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---E
Confidence 98 9999999999999999999999999999999999999999999999999999888654 443 4
Q ss_pred eeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 425 isTsNRNF~GR~G~~~-~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 425 ASTSNRNFEGRQGRGG-RTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCceec
Confidence 6899999999999855 67999999999999999995
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=5.5e-120 Score=1035.11 Aligned_cols=453 Identities=27% Similarity=0.387 Sum_probs=401.4
Q ss_pred cHHHHHHHHhhhcCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001914 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (996)
.++.+|||++.+.... ++.+|.++|||+++||+||++++.+|++| |. ..+||+++ .+++||++|++.+.
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4688999999986643 34589999999999999999999998764 53 47789875 58999999999732
Q ss_pred ---cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcc
Q 001914 237 ---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 312 (996)
Q Consensus 237 ---~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~ 312 (996)
..+....|+.+++++|.+||.+ + .+++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------R--LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------e--eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3446678899999999998864 1 245578999999999999 8999997 69999999999
Q ss_pred cCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCCh
Q 001914 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (996)
Q Consensus 313 ~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~ 392 (996)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceee
Q 001914 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (996)
Q Consensus 393 ~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~V 472 (996)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+++++|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788888888653 58999999999999999999999
Q ss_pred cCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCccc--ccCccEEEEEeecCCCCCChHHHHH
Q 001914 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAE--LKHGSVVIAAITSCTNTSNPSVMLG 550 (996)
Q Consensus 473 AgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~--l~~g~V~ia~IgSCTN~s~~dl~~a 550 (996)
|+|++|+|++||+|+.+++.++++.. ++......++|++.... +.+..|+|||||||||||+||+++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999999887765531 01111223455444322 5678999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeE
Q 001914 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (996)
Q Consensus 551 A~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~ 630 (996)
|++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++++.++ |++
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999877544 554
Q ss_pred EeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 631 ~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 6899999999999995 456999999999999999995
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=2.3e-119 Score=1029.95 Aligned_cols=452 Identities=26% Similarity=0.362 Sum_probs=398.9
Q ss_pred HHHHHHHHhhhcCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc--
Q 001914 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~-~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~-- 235 (996)
++.+|||++.+.+.. .+..|.+++||+++||.||++++..|. ++|. ..++|+. +.+++||++|++..
T Consensus 3 ~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~~ 72 (466)
T PRK05478 3 KTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRDL 72 (466)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCcccc
Confidence 678999999987654 456688999999999999999975543 3464 3677774 67899999999975
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+..++...|+.+++++|.+||.|. .+++.+||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~G 135 (466)
T PRK05478 73 PIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCccccc
Confidence 466777889999999999999761 245577899999999999 899999 68999999999999
Q ss_pred ccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001914 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+||||++||+++
T Consensus 136 alGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~ 215 (466)
T PRK05478 136 AFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEG 215 (466)
T ss_pred hhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecC
Q 001914 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++++|+.. .+|++|+|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~ 290 (466)
T PRK05478 216 RMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTW 290 (466)
T ss_pred HhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeecC
Confidence 99999999999999999999999999999554332 477899999999754 5899999999999999999999999
Q ss_pred CCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 001914 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~ia~IgSCTN~s~~dl~~aA~ 552 (996)
|++|+|++||+|+.++++++++... +.......+|++... .+.++.|+|||||||||||+||+++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ 360 (466)
T PRK05478 291 GTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAA 360 (466)
T ss_pred CCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHH
Confidence 9999999999999998887776431 111112334543222 2678899999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001914 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~s 632 (996)
+| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+||||+|+|++++.. .+|++ +
T Consensus 361 il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~ 424 (466)
T PRK05478 361 VV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---C 424 (466)
T ss_pred Hh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999986543 35676 6
Q ss_pred eeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|+|+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 425 vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 425 ASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 8899999999999665 48999999999999999995
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=5.7e-120 Score=1037.54 Aligned_cols=457 Identities=41% Similarity=0.631 Sum_probs=368.1
Q ss_pred HHHHHHHhhhcCCC----CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 160 EDVEKIIDWENSAP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 160 ~~vekil~~~~~~~----~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
|..|||++.+.... .+.+|.++|||+|+||+||++++.+|++| |. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~-------g~--~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAM-------GE--KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHH-------CH--CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHC-------CC--ceecCCC-ceEEecCccccccc
Confidence 46788988876532 34579999999999999999999999877 32 2445654 78999999999976
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccC
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~G 314 (996)
+.. |+..++++|.++|+|++|.++.|+...|.|++.||||||++| .|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 778889999999999999999886544545445999999999 8889995 7999999999999
Q ss_pred ccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001914 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecC
Q 001914 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|||||||++|+||++||||+|++|++||+.++|.++..++.++|.+.+.|| +|++|.|+++++||||+|||+||+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va~ 291 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVAG 291 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE-
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCcccccccc
Confidence 999999999999999999999999999999999988777777787888776 788999999999999999999999
Q ss_pred CCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCC--cccccCccEEEEEeecCCCCCChHHHHHHH
Q 001914 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ--PAELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~ 552 (996)
|++|+|++||+|+.+++.++++. ++. ......++|++. ..++.+++|++||||||||||+||+++||+
T Consensus 292 P~~P~~~~~v~e~~~~~~~~~~~-v~~---------~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~ 361 (465)
T PF00330_consen 292 PHSPDNVVPVSEVAPDFASILDP-VER---------EAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAG 361 (465)
T ss_dssp SSSTTSEEEHHHHHHHHHHHH-----C---------CGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHH
T ss_pred CCCCccccccccccccccccccc-ccc---------cccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHH
Confidence 99999999999999988866542 111 111223555433 357889999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccC-CCeeEE
Q 001914 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD-NDIVAA 631 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~-~~~~~~ 631 (996)
+|+++|+ ++|+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 362 il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~--- 430 (465)
T PF00330_consen 362 ILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV--- 430 (465)
T ss_dssp HHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE---
T ss_pred Hhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce---
Confidence 9988776 799999999999999999999999999999999999999999999999995 2211 122 443
Q ss_pred eeeccCCCCCCCCCCccCCceecChHHHHHHHhcc
Q 001914 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 666 (996)
Q Consensus 632 sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG 666 (996)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 ~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 78999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=9.1e-118 Score=1000.91 Aligned_cols=409 Identities=33% Similarity=0.519 Sum_probs=364.1
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001914 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
|||+||+||++++++|++| |. ++.++|. ++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999765 54 4455554 78999999998776544 4567889999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecC
Q 001914 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vP 342 (996)
++| |++|+|||+||||||++|+ +++|| ++|||||||||+||||+||||||++|++++|+||++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999994 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHH
Q 001914 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCC
Q 001914 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+.++|+++ ++++++|+ ++.+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99998865 67788887 34443 7899999999999999999999999999999999999864321
Q ss_pred CcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHH
Q 001914 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (996)
Q Consensus 503 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~ 582 (996)
.|++ -.|+|||||||||||+|||..|| .++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 15789999999999999966655 56799999999998 89999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCccccccCCCC-CChhhhccccCCCeeEEeeeccCCCCCCCCC-CccCCceecChHHHH
Q 001914 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 660 (996)
Q Consensus 583 ~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~-l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~g-p~~~~~YLASP~lVa 660 (996)
||+++||+++|.++||.|.+||||+|+|++++ .. .+++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 22 223321 368999999999994 445679999999999
Q ss_pred HHHhcccc
Q 001914 661 AYALAGTV 668 (996)
Q Consensus 661 A~AlaG~I 668 (996)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=8.3e-114 Score=963.07 Aligned_cols=380 Identities=27% Similarity=0.429 Sum_probs=342.9
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001914 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
|+++||+||++++. +||+ +|.+ ..+||++ +++++||++|++ +....|+.+++.+|.+||.+
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~gi----- 61 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFGI----- 61 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhCc-----
Confidence 68999999999974 3444 3442 2445553 589999999998 34466777788888877642
Q ss_pred cccccceeeCC-CCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeec
Q 001914 264 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (996)
Q Consensus 264 ~~f~~~~v~pp-G~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~v 341 (996)
+++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|+||++||++
T Consensus 62 ------~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 62 ------NFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred ------ccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 34556 89999999999 788889 58999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHH
Q 001914 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (996)
Q Consensus 342 PevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 421 (996)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+||+|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccC
Q 001914 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 422 L~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
|+.++|+.. + .+ ++|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999987631 1 22 57999999999999999999999999999999999998631
Q ss_pred CCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHH
Q 001914 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
.|+|||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHH
Q 001914 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
+||+++||+++|+++||.|.+|||++|+|+++++. .+||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 45665 689999999999998888999999999999
Q ss_pred HHhcccc
Q 001914 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=6.7e-113 Score=961.49 Aligned_cols=405 Identities=28% Similarity=0.435 Sum_probs=361.7
Q ss_pred HHHHHHHhhhcCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 001914 160 EDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (996)
Q Consensus 160 ~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~ 237 (996)
+++|||++.+.+.. .+..+.+++|++++||.|+++++..|.+ +|. +..+||+. +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-------~g~-~~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLEE-------YGI-DKVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCC-CcCCCCCc-EEEEcCCCCCCCChh-
Confidence 36899999987642 4567889999999999999999877643 465 34678875 788999999988643
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 001914 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (996)
Q Consensus 238 ~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~-v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Ga 315 (996)
.+..++..++|.| +++ +. |+++|+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~--------~~g------i~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVK--------KTG------IKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHH--------HcC------CceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 3445555566655 233 44 689999999999999 899999 589999999999999
Q ss_pred cccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001914 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCC
Q 001914 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
+|||||++|+||++||||+||+|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999998765311 12 57999999999999999999999999
Q ss_pred CCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001914 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLa 555 (996)
++|+|++||+++.+. .|+|||||||||||++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEGI---------------------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCCC---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 999999999997630 2679999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001914 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS 635 (996)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++...+ .+|++ +|+|
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 89999999999999999999999999999999999999999999999999975543 23565 6899
Q ss_pred cCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+||||+||||+....+|||||++||||||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999995
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=2.5e-112 Score=956.86 Aligned_cols=405 Identities=28% Similarity=0.407 Sum_probs=363.0
Q ss_pred HHHHHHHHhhhcCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001914 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (996)
++++|||++.+.+.. .+..|.+++|++++||.|+++++..|.+ +| .+.++|+. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~~-------~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLRE-------LG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHHH-------cC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 367899999987643 4567889999999999999999877644 46 56778886 678999999998643
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 001914 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Ga 315 (996)
.+..++..++|.| ++ ++++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~--------~~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK--------EH------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH--------Hc------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3333444444444 12 466789999999999999 899999 579999999999999
Q ss_pred cccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001914 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCC
Q 001914 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
+|||||++|+||++||||+|++|++||+.++|.+. ..| .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------~~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------RIL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------ccc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 99999999999999999999999999999987541 122 57999999999999999999999999
Q ss_pred CCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001914 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLa 555 (996)
++|+|++|++++.+. .|++||||||||+|++||++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998631 2569999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001914 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS 635 (996)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..++ .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999986653 34665 6899
Q ss_pred cCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+||||+||||+....+|||||++|||+||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999887889999999999999999995
No 24
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.2e-112 Score=951.20 Aligned_cols=379 Identities=36% Similarity=0.578 Sum_probs=346.9
Q ss_pred ceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhc
Q 001914 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (996)
Q Consensus 183 drvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~ 262 (996)
|++++||.|+++++..|+ ++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987764 45764 345563 6789999999863 2677889999999
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeec
Q 001914 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (996)
Q Consensus 263 ~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~v 341 (996)
+++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9888 6899999999999999994 4556 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHH
Q 001914 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (996)
Q Consensus 342 PevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 421 (996)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+||+|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccC
Q 001914 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 422 L~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 99999865431 12 4799999999999999999999999999999999999763
Q ss_pred CCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHH
Q 001914 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
. .|+|||||||||+|+||+++||++| ||+||+||||++|+|||++|+
T Consensus 258 --------------------~-------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 --------------------I-------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred --------------------c-------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 0 3779999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHH
Q 001914 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
++|+++||+++|+++||.|.+|||++|+|+++.+ + +|++ +|+|+||||+||||+....+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~-~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP-P-------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC-C-------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997663 2 3554 689999999999998888899999999999
Q ss_pred HHhcccc
Q 001914 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 25
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.8e-112 Score=956.81 Aligned_cols=406 Identities=30% Similarity=0.450 Sum_probs=361.2
Q ss_pred HHHHHHHHhhhcCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001914 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~ 236 (996)
++.+|||++.+.+.. .+..|.+++|++++||.|+++++..|.+ +|.+ ..+||+. +.+++||++|+...
T Consensus 3 ~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~~-~~~~~DH~~p~~~~- 72 (418)
T PRK00402 3 MTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPSK-IVIVFDHFVPAKDI- 72 (418)
T ss_pred cCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCCc-EEEECCCCCCCCCh-
Confidence 678999999987653 4566889999999999999999877644 3653 4667875 78899999999864
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001914 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~-v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
..+..++..++|.| ++ +++ |+++|+|||||+++| +|++.| +++|||||||||+|
T Consensus 73 -~~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~G 128 (418)
T PRK00402 73 -KSAEQQKILREFAK--------EQ------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTYG 128 (418)
T ss_pred -hhHHHHHHHHHHHH--------Hc------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCccccC
Confidence 33345555555554 22 344 678999999999999 888999 58999999999999
Q ss_pred ccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001914 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++
T Consensus 129 alG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~ 208 (418)
T PRK00402 129 ALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDE 208 (418)
T ss_pred ccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecC
Q 001914 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|+|||||++|+||++||||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||+
T Consensus 209 R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va~ 272 (418)
T PRK00402 209 RMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVAA 272 (418)
T ss_pred HhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeeec
Confidence 999999999999999999999999999998753321 11 14799999999999999999999999
Q ss_pred CCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHH
Q 001914 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLV 554 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lL 554 (996)
|++|+|++||+|+.+. .|+|||||||||+|+||+++||++|
T Consensus 273 P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~il 313 (418)
T PRK00402 273 PHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEIL 313 (418)
T ss_pred CCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH
Confidence 9999999999997631 2679999999999999999999999
Q ss_pred HHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeee
Q 001914 555 AKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVL 634 (996)
Q Consensus 555 ak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVs 634 (996)
||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++.+..+ +|++ +||
T Consensus 314 ------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vs 377 (418)
T PRK00402 314 ------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CLS 377 (418)
T ss_pred ------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEE
Confidence 999999999999999999999999999999999999999999999999998655432 3554 689
Q ss_pred ccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 635 SGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 635 S~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|+||||+||||+....+|||||++||||||+|+|+
T Consensus 378 T~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 378 TTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred ecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 99999999999877889999999999999999995
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=3.5e-111 Score=947.09 Aligned_cols=409 Identities=31% Similarity=0.455 Sum_probs=361.0
Q ss_pred HHHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
++.+|||++.+.+.. .+..|.+++|++++||.|+++++..|. ++|. +..+||+. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 367899999997743 456788999999999999999987664 3465 35678875 78899999999853
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-cccceeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~-GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (996)
..+..++..++|.| ++++++ |+++|. |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 34456666666666 334433 466775 999999999 999999 5799999999999
Q ss_pred CccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChh
Q 001914 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (996)
Q Consensus 314 GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~ 393 (996)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeec
Q 001914 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 394 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 473 (996)
+|||||||++|+||++||||+|++|++||+.+++++ .+ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765332 11 22 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001914 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 553 (996)
+|++|+|++|++|+... |. .|++||||||||||++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 11 366999999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEee
Q 001914 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sV 633 (996)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+... +|++ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998844433 3554 68
Q ss_pred eccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||+||||+||||.....+|||||++|||+||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999998655789999999999999999995
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-109 Score=907.19 Aligned_cols=410 Identities=30% Similarity=0.448 Sum_probs=360.9
Q ss_pred HHHHHHHHhhhcCCC--C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 159 KEDVEKIIDWENSAP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
++..|||++.+.+.. . +..+..++|++|+||.|+|.++.-| +++|. +.++|++ +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 688999999987654 2 2446789999999999999886543 34465 5677875 67899999999865
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG-~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (996)
..+ ++.+++.+|.++| ++ ..|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~a-----~~~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KAA-----EQQKELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HHH-----HHHHHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 332 4455566666544 33 3456678 9999999999 999999 5899999999999
Q ss_pred CccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChh
Q 001914 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (996)
Q Consensus 314 GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~ 393 (996)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeec
Q 001914 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 394 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 473 (996)
+|||||||++|+||++|+|+|||+|++||+... ++...|+.. .+|+||.|+++++||+|+|||+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 999999999999999999999999999999321 122344433 689999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001914 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 553 (996)
||++|+|+++++++.++. -.|+++|||||||+|++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~~-------------------------------------i~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP-------------------------------------IKIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc-------------------------------------eeeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999986421 1367999999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEee
Q 001914 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sV 633 (996)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.++.++ ||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---Ee
Confidence 9 8999999999999999999999999999999999999999999999999999776554 554 57
Q ss_pred eccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||+||||+||||+..+.+||+||+++||+|++|+|+
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999666788999999999999999995
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=4.3e-104 Score=893.32 Aligned_cols=402 Identities=24% Similarity=0.345 Sum_probs=349.0
Q ss_pred HHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccH
Q 001914 162 VEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSE 238 (996)
Q Consensus 162 vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~ 238 (996)
+||||+.+.+.. .+..|.+++|++++||.||++++..|.. +|. +++||+. +.+++||++|+....
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~~-~v~~~DH~~p~~~~~-- 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSADL-VMQSFCHTAAYPKPV-- 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCcc-EEEEcCCCCCCCCHH--
Confidence 699999987643 4667899999999999999999877754 354 4677775 678999999988543
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCccc
Q 001914 239 NAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLG 317 (996)
Q Consensus 239 ~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG 317 (996)
.+..++..++|.++ + ++.|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHH--------c------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 34466677777773 2 356789999999999888 35786 56999999999987
Q ss_pred cccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHH------------HHHcCcceeEEEEecC
Q 001914 318 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQM------------LRKHGVVGKFVEFHGD 385 (996)
Q Consensus 318 ~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~------------Lr~~Gvvgk~VEF~G~ 385 (996)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+.. ++.+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 799999999999999999999999999999999999999999999987643 33334689999995
Q ss_pred ccCCCChhhhhhhhccCcccccccccccCChhH-HHHHhhc----------CCCc-----hHHHHHHHHHHHhhccccCC
Q 001914 386 GMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDYN 449 (996)
Q Consensus 386 Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T-~~YL~~t----------gR~~-----~~~~~~~~y~k~~~l~~~~~ 449 (996)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ .+.+.++.|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3445678888887777
Q ss_pred CCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccC
Q 001914 450 EPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKH 528 (996)
Q Consensus 450 ~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~ 528 (996)
.+|++|.|+++++||||+| ||+||+|++|+|++|++|+.+.
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~-------------------------------------- 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK-------------------------------------- 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC--------------------------------------
Confidence 5799999999999999999 9999999999999999997631
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccc
Q 001914 529 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTC 608 (996)
Q Consensus 529 g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~C 608 (996)
.|+++||||||| +++|++.||.+| ||++++ .||++|+|||++|+++|+++|++++|+++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 256899999999 999999999999 999964 59999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 001914 609 IGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (996)
Q Consensus 609 iG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (996)
+|+.+.+ .+|++ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985443 45776 689999999999999 568899999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=7.6e-103 Score=866.40 Aligned_cols=361 Identities=32% Similarity=0.492 Sum_probs=318.2
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001914 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
.+++||.|+++++. |. ++|. ++.++|+. +.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998764 43 3465 45778875 678999999988542 3334444444444
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecC
Q 001914 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vP 342 (996)
++ +++|+++|+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 22 567899999999999999 8999997 56999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHH
Q 001914 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCC
Q 001914 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 457999999999999999999999999997420
Q ss_pred CcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCC-CccCCceeEEEecCcHHHH
Q 001914 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 503 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG-~kV~p~Vk~~v~PGS~~V~ 581 (996)
| -.|++||||||||+|++|+++||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ------------------~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 ------------------N-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred ------------------C-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 1367999999999999999999999943333322 3399999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHH
Q 001914 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
++|+++||+++|.++||.|.+|||++|+|+++++.++ +|+ +|||+||||+||||+....+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 9999999999999999999999999999999887543 565 589999999999998888999999999999
Q ss_pred HHhcccc
Q 001914 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=4.5e-99 Score=850.18 Aligned_cols=388 Identities=38% Similarity=0.605 Sum_probs=351.3
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001914 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
||++||+||++++.+|+.| |.+.+.+||. ++.+++||++|+.. .+|.++|+|++|..
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887654 5532355664 68999999999863 26677788888888
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecC
Q 001914 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vP 342 (996)
+.|+ ++++++|+|||||+++|++ ..| ++++||||||||+||||++|||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8775 8999999999999999943 456 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHH
Q 001914 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCC
Q 001914 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+.++|++... .+++|.+ .+ .+|++|.|+++++|||++|||+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~---~l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPE---EL----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHh---cc----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999887544 3444433 22 5899999999999999999999999999999999999752
Q ss_pred CcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHH
Q 001914 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (996)
Q Consensus 503 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~ 582 (996)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13779999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHH
Q 001914 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (996)
Q Consensus 583 ~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~ 662 (996)
+++++||+++|+++||.|..+||++|+|+++++..+ |++ +|+|+||||+||||+..+.+|||||++||||
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 999999999999999999999999999999887543 554 6899999999999998889999999999999
Q ss_pred Hhcccc
Q 001914 663 ALAGTV 668 (996)
Q Consensus 663 AlaG~I 668 (996)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=3e-96 Score=870.10 Aligned_cols=410 Identities=23% Similarity=0.327 Sum_probs=357.0
Q ss_pred cccHHHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 001914 156 QVKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQV 232 (996)
Q Consensus 156 ~v~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~ 232 (996)
.-.++.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~ 437 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAY 437 (835)
T ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCC
Confidence 345799999999987743 56679999999999999999986554 55575 4667765 67899999998
Q ss_pred CCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCc
Q 001914 233 DVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTT 311 (996)
Q Consensus 233 d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~ 311 (996)
... .++..++..++|.++ + ++.+++||+|||||++ +|+++||+ ++|||||||
T Consensus 438 ~~~--~~a~~~~~lr~Fa~~--------~------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~ 490 (835)
T PRK09238 438 PKP--VDVKTHHTLPDFIMN--------R------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 490 (835)
T ss_pred CCH--HHHHHHHHHHHHHHH--------c------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccC
Confidence 743 455566667777763 2 2345889999999996 35889986 599999999
Q ss_pred ccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHH------------cCcceeE
Q 001914 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKF 379 (996)
Q Consensus 312 ~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~------------~Gvvgk~ 379 (996)
|+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+
T Consensus 491 t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~ 567 (835)
T PRK09238 491 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 567 (835)
T ss_pred CCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeE
Confidence 9998 689999999999999999999999999999999999999999999999444333 3578999
Q ss_pred EEEecCccCCCChhhhhhhhccCccccccccccc-CChhHHHHHhhc----------CCC-----chHHHHHHHHHHHhh
Q 001914 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS-----DETVAMVEGYLRANK 443 (996)
Q Consensus 380 VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp-~De~T~~YL~~t----------gR~-----~~~~~~~~~y~k~~~ 443 (996)
|||. |+++||+++|+|||||++|+||++|+|| +|++|++||+.+ ||+ ..+++.+++|++.+.
T Consensus 568 lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ 645 (835)
T PRK09238 568 LEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPE 645 (835)
T ss_pred EEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcc
Confidence 9994 6999999999999999999999999999 789999999986 664 235677899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCC
Q 001914 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (996)
Q Consensus 444 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 522 (996)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 646 ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~-------------------------------- 689 (835)
T PRK09238 646 LL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------------------------- 689 (835)
T ss_pred cc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC--------------------------------
Confidence 88 5799999999999999999 9999999999999999998631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEec
Q 001914 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 602 (996)
Q Consensus 523 ~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~ 602 (996)
.|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..
T Consensus 690 -------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~ 755 (835)
T PRK09238 690 -------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEM 755 (835)
T ss_pred -------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECC
Confidence 25689999999 9999999999999 999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 603 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 603 ~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|||++|+||.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 756 pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 756 PGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred CcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 9999999996543 45775 689999999999997 5678999999999999999993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=5.1e-95 Score=857.18 Aligned_cols=408 Identities=23% Similarity=0.333 Sum_probs=354.7
Q ss_pred ccHHHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 001914 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (996)
Q Consensus 157 v~~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d 233 (996)
..++.+|||++.+.+.. .+..|..++|.|++||.||++++..|. ++|. ..++|+. +.+++||.++..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-------~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------HhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987743 566799999999999999999976654 4454 4566664 678999999876
Q ss_pred CcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCcc
Q 001914 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (996)
Q Consensus 234 ~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~ 312 (996)
. ..++..++..++|.++ + ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~--------~------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHH--------c------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 3455667777777774 2 344688999999999876 468875 6999999999
Q ss_pred cCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHH------------cCcceeEE
Q 001914 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (996)
Q Consensus 313 ~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~------------~Gvvgk~V 380 (996)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999654443 45689999
Q ss_pred EEecCccCCCChhhhhhhhccCcccccccccccCChh-HHHHHhhc----------CCCc-----hHHHHHHHHHHHhhc
Q 001914 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (996)
Q Consensus 381 EF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~-T~~YL~~t----------gR~~-----~~~~~~~~y~k~~~l 444 (996)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++...+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 69999999999999999999999999999965 89999985 6654 356778899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCc
Q 001914 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (996)
Q Consensus 445 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 523 (996)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 001914 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (996)
Q Consensus 524 ~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~ 603 (996)
.|+++|||||| |+.+|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25589999999 7999999999999 9999988 99999999999999999999999999999999999
Q ss_pred CccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 604 GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||++|+||.+.+ .+|++ +|||+||||+||||+. ..+|||||++|||+||+|+|+
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCcccC
Confidence 999999996654 34564 5789999999999985 578999999999999999993
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=5.1e-93 Score=837.62 Aligned_cols=410 Identities=22% Similarity=0.319 Sum_probs=352.8
Q ss_pred cccHHHHHHHHhhhcCC----CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001914 156 QVKKEDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 156 ~v~~~~vekil~~~~~~----~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~ 231 (996)
...++.+|||++.+.+. ..+..|..++|.|++||.||++++..|..| .-++.||++ |.+++||.++
T Consensus 441 ~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel----~~~~~dpdk------v~~~fDH~ap 510 (938)
T PLN00094 441 PKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKDL----ACLGFSADL------VMQSFCHTAA 510 (938)
T ss_pred CCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHHh----cccccCccc------EEEEccCCCC
Confidence 34589999999998764 256679999999999999999997665433 113445443 5789999988
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001914 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
+... .++..++..++|.++ + ++.+++||+|||||++.| +++|| +++|+||||
T Consensus 511 ~p~~--~~~~~~~~lr~Fa~~--------~------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT 563 (938)
T PLN00094 511 YPKP--VDVVTHHTLPDFIRN--------R------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHT 563 (938)
T ss_pred CCCH--HHHHHHHHHHHHHHH--------c------CCEEECCCCceecccccc-----------cccCCeEEEeecCCC
Confidence 7754 455566677777773 2 345788999999999755 77886 579999999
Q ss_pred cccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHH------HHHH------HcCccee
Q 001914 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVT------QMLR------KHGVVGK 378 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~------~~Lr------~~Gvvgk 378 (996)
|+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+ +.+++||
T Consensus 564 ~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gk 640 (938)
T PLN00094 564 RFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGR 640 (938)
T ss_pred CCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeE
Confidence 988776 668899999999999999999999999999999999999999999997 4443 3346899
Q ss_pred EEEEecCccCCCChhhhhhhhccCcccccccccccCC-hhHHHHHhh----------cCCC-----chHHHHHHHHHHHh
Q 001914 379 FVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS-----DETVAMVEGYLRAN 442 (996)
Q Consensus 379 ~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D-e~T~~YL~~----------tgR~-----~~~~~~~~~y~k~~ 442 (996)
+||| +|+++||+++|+|||||++|+||++|+||+| +.|++||+. +|+. +++++.+++|++..
T Consensus 641 ilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~ 718 (938)
T PLN00094 641 ILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADP 718 (938)
T ss_pred EEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhc
Confidence 9999 7799999999999999999999999999999 578999986 4543 34567889999888
Q ss_pred hccccCCCCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCC
Q 001914 443 KMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 521 (996)
Q Consensus 443 ~l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 521 (996)
.+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 719 ~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~------------------------------- 763 (938)
T PLN00094 719 ELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD------------------------------- 763 (938)
T ss_pred ccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC-------------------------------
Confidence 887 5799999999999999999 9999999999999999997531
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEe
Q 001914 522 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601 (996)
Q Consensus 522 ~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~ 601 (996)
.|++||||||| |+++|++.||.+| +|+++++.||++|+|||+.|+++|+++|++++|.++||.|.
T Consensus 764 --------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~ 828 (938)
T PLN00094 764 --------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTE 828 (938)
T ss_pred --------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEc
Confidence 25689999999 7999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 001914 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 602 ~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
.||||+|+||++.+ .+|++ +|||+||||+||||+ ...+||+||++|||+||+|+|+
T Consensus 829 ~PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 829 MPGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CCccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 99999999996665 34665 689999999999998 4589999999999999999993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.1e-67 Score=525.96 Aligned_cols=170 Identities=75% Similarity=1.143 Sum_probs=167.5
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001914 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 851 (996)
+|||+||||||||||+|+++||||+||.++|++++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhcc
Q 001914 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~ 931 (996)
.|+|||+|++|+++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 001914 932 LTGHERFSID 941 (996)
Q Consensus 932 l~g~e~~~Id 941 (996)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999999875
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=5.5e-50 Score=451.87 Aligned_cols=416 Identities=25% Similarity=0.355 Sum_probs=338.7
Q ss_pred HHHHHHHHhhhcCC---CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 159 KEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~---~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
-+.+||+++++.+. .++.++..+...|-.||.||+|.-.+|..| +-+|.+ +|+++..++.+..+
T Consensus 373 ~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHTAay 439 (852)
T COG1049 373 FTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHTAAY 439 (852)
T ss_pred ccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhccc---------chhhhhhccccccc
Confidence 46788898887664 356778888999999999999996665443 445664 47888887776554
Q ss_pred c-cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeE-eecCCCCccc
Q 001914 236 R-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMI 313 (996)
Q Consensus 236 ~-~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pdtv-VGtDSHT~~~ 313 (996)
- ..|-..+...-.|.. ++.++. ..||.||+|.+. +.+++|||| .|+||||.+.
T Consensus 440 pkpvdv~th~~Lp~Fi~-------------~rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfp 494 (852)
T COG1049 440 PKPVDVKTHHTLPDFIM-------------NRGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFP 494 (852)
T ss_pred CCccchhccccchHHHh-------------hcCcee-cCCCCccHHHHH-----------HhccCCcceecCCccccccc
Confidence 3 222222222223333 344444 458999999986 568999986 8999999998
Q ss_pred CccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHH------HH--H----cCcceeEEE
Q 001914 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQM------LR--K----HGVVGKFVE 381 (996)
Q Consensus 314 GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~------Lr--~----~Gvvgk~VE 381 (996)
=|+ +|+.|+.=++.+.+++.+.|.+||+|.|+++|+++||||-+|||..|--. |. + +-..|+++|
T Consensus 495 iGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlE 571 (852)
T COG1049 495 IGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILE 571 (852)
T ss_pred ccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEE
Confidence 777 88999999999999999999999999999999999999999999887532 22 1 124699999
Q ss_pred EecCccCCCChhhhhhhhccCcccccccccc-cCChhHHHHHhhc----------CCC-----chHHHHHHHHHHHhhcc
Q 001914 382 FHGDGMGELSLADRATIANMSPEYGATMGFF-PVDHVTLQYLKLT----------GRS-----DETVAMVEGYLRANKMF 445 (996)
Q Consensus 382 F~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~f-p~De~T~~YL~~t----------gR~-----~~~~~~~~~y~k~~~l~ 445 (996)
. +|+.+|.+++-++++..++|..|..+.+ -.+|..++||+.. |.. +..++.+|+|+.+..|+
T Consensus 572 i--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll 649 (852)
T COG1049 572 I--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL 649 (852)
T ss_pred e--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc
Confidence 9 8899999999999999999999988865 4777788999754 333 24567788999888777
Q ss_pred ccCCCCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcc
Q 001914 446 VDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 524 (996)
Q Consensus 446 ~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 524 (996)
.+|.+|+|..+|+|||+.| ||++|+|.+|||+..++++..+
T Consensus 650 ----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~---------------------------------- 691 (852)
T COG1049 650 ----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD---------------------------------- 691 (852)
T ss_pred ----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC----------------------------------
Confidence 6899999999999999999 8999999999999999997631
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccC
Q 001914 525 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 604 (996)
Q Consensus 525 ~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~G 604 (996)
.|+-+|||||.. ..-+++++|.+| +|.+=.-..|++|+|-++...++|.++|++.+|-++|+++.-||
T Consensus 692 -----~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PG 759 (852)
T COG1049 692 -----KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPG 759 (852)
T ss_pred -----ccceeeeehhhc-cchhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCC
Confidence 155789999976 478999999999 44432223789999999999999999999999999999999999
Q ss_pred ccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCccCCCCC
Q 001914 605 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGK 684 (996)
Q Consensus 605 Cg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~ 684 (996)
|+.|+||.... ++|..| +||++|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 760 CsLCMGNQarv--------~dgatV---~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki---------------- 811 (852)
T COG1049 760 CSLCMGNQARV--------ADGATV---FSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI---------------- 811 (852)
T ss_pred cccccccHhhh--------ccCCEE---EeeccccCCccccccc-ceeeeccHHHHHHHHHcCC----------------
Confidence 99999996553 566663 6899999999999986 5899999999999999999
Q ss_pred eeccccCCCChHHHHHHhh
Q 001914 685 SVYFKDIWPTTEEIAEVVQ 703 (996)
Q Consensus 685 ~v~l~diwP~~~ei~~~~~ 703 (996)
|+.||...++.
T Consensus 812 --------Pt~eEY~~~v~ 822 (852)
T COG1049 812 --------PTVEEYMAYVA 822 (852)
T ss_pred --------CCHHHHHHHHH
Confidence 89999888876
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=388.44 Aligned_cols=401 Identities=23% Similarity=0.301 Sum_probs=267.8
Q ss_pred HHHHHhhccccCCCCCCCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccCCCcCCCcccccccee
Q 001914 437 GYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVK 516 (996)
Q Consensus 437 ~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 516 (996)
+|.++..+|.+. .+|+.+.|+.+++|..-++.|.+.|..+||+..|+..-.++.....+ + | -.......
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd-~-------i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD-K-------I--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch-H-------H--HHhhhhhc
Confidence 345566677664 68999999999999999999999999999999999876554221111 0 0 00112245
Q ss_pred eccCCCccccc--CccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee-EEEecCcHHHHHHHHHcCchHHH
Q 001914 517 FSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYL 593 (996)
Q Consensus 517 ~~~~g~~~~l~--~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk-~~v~PGS~~V~~~l~~~Gll~~L 593 (996)
+.|+|.+.... --.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 67888755433 334557999999999999999999999 9999987777 68899999999999999999999
Q ss_pred HhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCC
Q 001914 594 NEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFD 673 (996)
Q Consensus 594 ~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~ 673 (996)
.++||.|+..||+.|.|+.-+.....|.| -+|+|||||||+|.+.++ +|+||.+.+|..+.|+-. ++.
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~ 223 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFR 223 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-ccc
Confidence 99999999999999999986555556664 389999999999999876 999999999999999874 111
Q ss_pred CCCCccCCCCCe---eccccCCCChHHHHHHhhccCCcchhhcccccccC-CCCCcccccCCCCCccccCCCCccccCCC
Q 001914 674 KEPIGTTKDGKS---VYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITK-GNPTWNQLSVPASKLYSWDPNSTYIHEPP 749 (996)
Q Consensus 674 ~eplg~~~~G~~---v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~Wd~~styi~~pp 749 (996)
.-+-+..-.+.| +.|++--|+ +.++ +..+.. +++.- ..++....-+.+..+.-+..++
T Consensus 224 ~~~~k~~~~~~Ps~~l~~~g~s~s-----------v~~~-----~~li~~ia~ds~--t~i~~~at~e~~s~~sSl~m~~ 285 (502)
T KOG0454|consen 224 EFTGKDSLKVSPSPFLTLKGESPS-----------VLPA-----KDLIVSIATDSS--TDIPRVATMEFSSTTSSLGMET 285 (502)
T ss_pred cccccccccCCCCceEEeCCCCcc-----------cccc-----ccchhhhhcccc--ccccceecccCCCccccccCcc
Confidence 111000000110 111110000 0000 000000 00000 0001001111111111222333
Q ss_pred CCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccch
Q 001914 750 YFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANI 829 (996)
Q Consensus 750 ~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~ 829 (996)
|- .+.+ ++.|||+||+|+|+ +||+. +.++. ..++.|..+
T Consensus 286 F~-----------tLc~-----vv~dNiDTD~IIP~----------qfltl--i~~~~-------------~~~~~f~~~ 324 (502)
T KOG0454|consen 286 FH-----------TLCG-----VVADNIDTDQIIPA----------QFLTL--IPSTG-------------LILSCFYEV 324 (502)
T ss_pred ee-----------eeeh-----hhhhhCCcCcccCh----------hhhcc--cccch-------------hhhhhhhhh
Confidence 31 1222 44599999999999 78885 33332 246778888
Q ss_pred hhhhhhcCCCCCC-ceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhh
Q 001914 830 RLVNKLLNGEVGP-KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHR 908 (996)
Q Consensus 830 r~~N~l~~~~~g~-~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr 908 (996)
++. |.... .+. ++++. +.|++. .|+|+|.|||||||||||.|++.+.|+++|||+||+|||+
T Consensus 325 ~~d-----g~~k~~~~d--------Fv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFf 387 (502)
T KOG0454|consen 325 ALD-----GLPKSFVTD--------FVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFF 387 (502)
T ss_pred eec-----CCchhhccc--------eeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHH
Confidence 753 21111 222 34443 334332 7999999999999999999999999999999999999999
Q ss_pred hhcccCcccceeccCccchhhccCCCCeEEEEecCC
Q 001914 909 SNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPS 944 (996)
Q Consensus 909 ~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~ 944 (996)
+|++.+|.+|..-+.....+. ...++..+|.+..
T Consensus 388 rN~~atG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 388 RNSVATGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred HhHHhcCCccCCCceeeeccc--ceecceeeEEccc
Confidence 999999999876554333332 1234555665553
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.5e-39 Score=318.84 Aligned_cols=141 Identities=35% Similarity=0.502 Sum_probs=124.8
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001914 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 851 (996)
|..++||||||||||+ ||+. |||.+.+.+.+|. +..|... + +-+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 4568999999999984 6876 7799999998884 5567664 3 334678889999
Q ss_pred ccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhcc
Q 001914 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~ 931 (996)
.++++++|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|+++++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888765
Q ss_pred CCCCeEEEEe
Q 001914 932 LTGHERFSID 941 (996)
Q Consensus 932 l~g~e~~~Id 941 (996)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 577888875
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1.3e-35 Score=299.88 Aligned_cols=156 Identities=32% Similarity=0.518 Sum_probs=126.8
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001914 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 849 (996)
+.++|||||||||+|+ +||+. .|.|.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 4689999999999997 89864 256778899998876 11
Q ss_pred CcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhh
Q 001914 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~ 929 (996)
.+.+.+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 112333 247999999999999999999999999999999999999999999999999999964 2454
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001914 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 993 (996)
++.+++++||+.. ++|.+ ..+|+++.+.. .++.+++++++||++||++++.
T Consensus 109 --l~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~--l~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 --IEDGDEVEVDLET--------GVITN-LTTGEEYKFKP--IPEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred --cCCCCEEEEECCC--------CEEEe-CCCCeEEEEee--CCHHHHHHHHcCCHHHHHHHhc
Confidence 3677889999865 23432 23478888763 3889999999999999999875
No 39
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.4e-35 Score=296.90 Aligned_cols=151 Identities=29% Similarity=0.529 Sum_probs=122.2
Q ss_pred eecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCC
Q 001914 771 LNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTG 850 (996)
Q Consensus 771 ~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g 850 (996)
.++|||||||||+|+ +||.. .+.|.|.+++|.++| |+
T Consensus 4 ~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~- 40 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------------PE- 40 (154)
T ss_pred EEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------------ch-
Confidence 589999999999997 89864 255778899998875 11
Q ss_pred cccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhc
Q 001914 851 EKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL 930 (996)
Q Consensus 851 ~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l 930 (996)
.+.+.+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 41 -------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~- 105 (154)
T TIGR02087 41 -------FAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG- 105 (154)
T ss_pred -------hhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH-
Confidence 1122332 37999999999999999999999999999999999999999999999998888764 22
Q ss_pred cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001914 931 GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 931 ~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~ 992 (996)
+..++.++||+.. ++|+ ..+|+++.+.. .++.+++++++||++||++++
T Consensus 106 -i~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 -IKDGDEVTVDLET--------GEIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred -CCCCCEEEEECCC--------CEEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 3457789999875 2344 35567787743 489999999999999999874
No 40
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=298.34 Aligned_cols=155 Identities=34% Similarity=0.561 Sum_probs=126.1
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001914 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 849 (996)
+.++|||||||+|+|+ +||+.. .|.|.|.+++|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 4689999999999997 898741 255778899998765 1
Q ss_pred CcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhh
Q 001914 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~ 929 (996)
+.+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++.+ +.++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHH
Confidence 12245553 4799999999999999999999999999999999999999999999999998743 34555
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001914 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 993 (996)
+ ..+++++||+.. ++++ . +|+++.+.+ .++.+++++++|||++|++++.
T Consensus 110 l--~~gd~i~vDl~~--------~~v~--~-~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~ 158 (166)
T PRK14023 110 L--EDGDEVELDLET--------GVLT--R-GGETFQLRP--PPEFLLEALKEGSILEYYRKHG 158 (166)
T ss_pred h--CCCCEEEEECCC--------CEEE--E-CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhC
Confidence 4 457889999875 2333 2 567787776 6889999999999999999873
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=2.6e-35 Score=295.40 Aligned_cols=154 Identities=31% Similarity=0.517 Sum_probs=122.5
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001914 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 849 (996)
+.++|||||||||+|+ +||.. .|.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999997 89862 356788999998875 11
Q ss_pred CcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhh
Q 001914 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~ 929 (996)
.+.+++ .+.|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|| |+... ++.++.
T Consensus 41 --------f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 134453 24799999999999999999999999999999999999999999999997 55433 344555
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHH
Q 001914 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIR 991 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r 991 (996)
+ ..+++++||+.. .+|+ ...+|++|.+.. .++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~--------~~v~-~~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEK--------GIIK-NLTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCC--------CEEE-EecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 4 567889999865 2332 134578888883 37899999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=297.93 Aligned_cols=165 Identities=25% Similarity=0.470 Sum_probs=129.8
Q ss_pred EeecC-CCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecC
Q 001914 770 LLNFG-DSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVP 848 (996)
Q Consensus 770 L~~~g-D~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p 848 (996)
..++| ||||||+|+|+ |||+. +++.+| ..++|.++|+.. |
T Consensus 11 ~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------------P 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------------P 51 (191)
T ss_pred EEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------------c
Confidence 45677 99999999997 99986 667776 578999999631 2
Q ss_pred CCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchh
Q 001914 849 TGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDAD 928 (996)
Q Consensus 849 ~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~ 928 (996)
+ |+.+. ++|+. .+|||||+|||||||||||+||++.+||+||||+||+|||++||+|+||||+...+++..+
T Consensus 52 d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 1 34443 56764 4899999999999999999999999999999999999999999999999999987654334
Q ss_pred hccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc----ChHHHHHHHHh
Q 001914 929 SLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG----GILPFVIRNLI 994 (996)
Q Consensus 929 ~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG----GiL~yv~r~~~ 994 (996)
.+....+++++|||+.+ + |+..++.++...+ +++.++++.+| ||+.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~~--------~--v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLETG--------E--VTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCCC--------e--EEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 34333578899999863 2 3334343343332 78999999999 99999998763
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=298.79 Aligned_cols=170 Identities=28% Similarity=0.376 Sum_probs=124.5
Q ss_pred ceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceee
Q 001914 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (996)
Q Consensus 767 a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~ 846 (996)
.|+ .++|||||||||+|+ +||.... +...+.|.|.++.|.+++- + .....
T Consensus 71 Grv-~k~gDNIdTD~IiPa----------~~l~~~~----------sn~~~~~~l~~~~F~~l~~-~--------~~~r~ 120 (246)
T PLN00072 71 GLC-FVVGDNIDTDQIIPA----------EYLTLVP----------SKPDEYEKLGSYALIGLPA-F--------YKTRF 120 (246)
T ss_pred EeE-EEeCCCcchhhcccH----------HHhcccc----------ccCCCHHHHHHhhhccCCc-c--------hhhcc
Confidence 466 589999999999998 8987520 0011357888999977640 0 01111
Q ss_pred cCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCc-ccceeccCcc
Q 001914 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCFKAGE 925 (996)
Q Consensus 847 ~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~G-iLpL~f~~~~ 925 (996)
...|+.. .+ ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||++. +.+
T Consensus 121 v~~Gd~~-----------~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~-~~~ 187 (246)
T PLN00072 121 VEPGEMK-----------TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES-EVR 187 (246)
T ss_pred cCCCCCC-----------CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc-cHH
Confidence 1112110 11 269999999999999999999999999999999999999999999999 788874 333
Q ss_pred chhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001914 926 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 926 ~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 993 (996)
.++.+ ..+++++||+.+ +.|+ ...+|++|.+.+. . .+++++++|||++|++++-
T Consensus 188 ~~e~i--~~Gd~i~VDl~~--------~~v~-n~t~g~~~~~~p~--~-~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 188 ICEEC--KTGDVVTVELGN--------SVLI-NHTTGKEYKLKPI--G-DAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred HHHhc--CCCCEEEEECCC--------CEEE-ECCCCeEEEecCC--H-HHHHHHHcCCHHHHHHhhC
Confidence 44443 467889999864 2332 2356788888872 3 4999999999999999873
No 44
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=1.2e-34 Score=282.55 Aligned_cols=128 Identities=41% Similarity=0.541 Sum_probs=117.8
Q ss_pred hHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCC
Q 001914 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (996)
Q Consensus 796 ~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~ 875 (996)
+||+.+|+...++|+|+.|++||++|.+++|.|.++.|.+..+...+.+.+.|+++.+.+++++++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 68888999999999999999999999999999999999999888889999999999999999999999888888888889
Q ss_pred ccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccC
Q 001914 876 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 923 (996)
Q Consensus 876 nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~ 923 (996)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=6.7e-32 Score=260.66 Aligned_cols=121 Identities=45% Similarity=0.719 Sum_probs=95.4
Q ss_pred ecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001914 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 851 (996)
++|||||||||+|++. +||.. |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999863 35554 3566788888887643 1
Q ss_pred ccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhcc
Q 001914 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~ 931 (996)
+.+.+++. |...|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|+|||++++.+.++.
T Consensus 39 -----~f~~~~~~-~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKA-AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhccc-CCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 11233443 2246999999999999999999999999999999999999999999999999999987655554
Q ss_pred CCCCeEEEEec
Q 001914 932 LTGHERFSIDL 942 (996)
Q Consensus 932 l~g~e~~~Idl 942 (996)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34566777653
No 46
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=2e-31 Score=274.33 Aligned_cols=163 Identities=25% Similarity=0.403 Sum_probs=122.1
Q ss_pred eEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeec
Q 001914 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (996)
Q Consensus 768 ~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~ 847 (996)
++....|||||||+|+|+ +||+. ++ .+.+.+++|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP~----------rfl~~--~~-------------~~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIPK----------QFLKR--IT-------------RTGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhHH----------HHhCc--CC-------------HHHHHHhcccccccccc--ccC-CCC----
Confidence 555444999999999998 99975 22 34568999999997421 110 010
Q ss_pred CCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccch
Q 001914 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927 (996)
Q Consensus 848 p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~ 927 (996)
| .+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+..
T Consensus 58 p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 1 244554 45654 479999999999999999999999999999999999999999999999999999864443
Q ss_pred hhcc--CCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 928 DSLG--LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 928 ~~l~--l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
+.+. ...+++++||+.. ++|+ ..+|+++.+.+ ++..++.+-.|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~--------~~v~--~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLEN--------QLIH--DSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCC--------CEEE--eCCCeEEEEEe---CHHHHHHHHcC
Confidence 3321 2567889999876 3344 34567777774 67888888777
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.97 E-value=9.3e-31 Score=271.79 Aligned_cols=160 Identities=27% Similarity=0.469 Sum_probs=121.5
Q ss_pred ceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceee
Q 001914 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (996)
Q Consensus 767 a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~ 846 (996)
.+++...|||||||+|+|+ +||+. + ..|.|.+++|.++|+... +...+
T Consensus 9 G~~~~l~~dnIDTD~IiPa----------~fl~~--~-------------~~~~l~~~~f~~~r~~~~---~~~~p---- 56 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIPK----------QFLKR--I-------------TRTGFGKGLFDDWRYLDD---GQPNP---- 56 (200)
T ss_pred EEEEEcCCCCCChhhcchH----------hHcCc--C-------------CHHHHHHhhhcccccccc---CCCCC----
Confidence 3666666999999999998 89874 2 235678999999986421 11111
Q ss_pred cCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccc
Q 001914 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926 (996)
Q Consensus 847 ~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~ 926 (996)
.+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+
T Consensus 57 ------~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~- 125 (200)
T PRK01641 57 ------DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEED- 125 (200)
T ss_pred ------Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHHH-
Confidence 134443 56653 4799999999999999999999999999999999999999999999999999997543
Q ss_pred hhhc-c-C--CCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 927 ADSL-G-L--TGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 927 ~~~l-~-l--~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
.+.| . + ..++.++||+.. ++|+ .. |+++.+.+ ++..++++.+|
T Consensus 126 i~~l~~~~~~~~g~~i~vDl~~--------~~v~--~~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 126 VDELFKLVEANPGAELTVDLEA--------QTVT--AP-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEcCC--------CEEe--cC-CeEEEEEc---CHHHHHHHHcC
Confidence 2333 1 2 467889999875 2333 22 56777774 78899999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=6.3e-29 Score=228.54 Aligned_cols=73 Identities=33% Similarity=0.548 Sum_probs=62.7
Q ss_pred eEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEec
Q 001914 869 TIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDL 942 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl 942 (996)
.|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999987765543 2234555666653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.95 E-value=2.2e-28 Score=223.59 Aligned_cols=71 Identities=44% Similarity=0.614 Sum_probs=63.5
Q ss_pred eEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEe
Q 001914 869 TIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSID 941 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Id 941 (996)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++...++++ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999877666553 455666654
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.93 E-value=5.3e-26 Score=272.12 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=121.6
Q ss_pred CcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCC
Q 001914 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (996)
Q Consensus 763 ~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~ 842 (996)
.|+ .+| +++||||+||||||| +|+.. |.|.+...+..|.+.+
T Consensus 165 ~i~-g~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KIT-VTV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccE-EEE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC------------
Confidence 454 456 799999999999998 45533 4566767766665542
Q ss_pred ceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcc-------------cccCceEEEecchhhHhhh
Q 001914 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRS 909 (996)
Q Consensus 843 ~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVkAVIA~SF~RIhr~ 909 (996)
|+ ..+.+++++..|. .|||+|+|||||||||||++++ +..| ++|||+||+|||++
T Consensus 207 -----p~-----f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g-~~VIa~SfArIFf~ 274 (835)
T PRK09238 207 -----PG-----PIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAG-GVVLGGKIAPIFFN 274 (835)
T ss_pred -----Cc-----HHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceE-EEEEeCchHHHHHh
Confidence 11 2334444444553 4999999999999999999997 3445 99999999999999
Q ss_pred hcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCe-EEEEEecCCCHHHHHHHHhcChHHH
Q 001914 910 NLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGK-SFTCTVRFDTEVELAYFDHGGILPF 988 (996)
Q Consensus 910 Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~y 988 (996)
|++|+|+|||+|+ ++. +..++.++||+.++ .|. ..+|+ .+.+.+ .++.+++++++||++||
T Consensus 275 Nain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~ 336 (835)
T PRK09238 275 TMEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPL 336 (835)
T ss_pred hhHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHH
Confidence 9999999999995 333 34678899998752 333 23443 255554 57899999999999999
Q ss_pred HHHHHh
Q 001914 989 VIRNLI 994 (996)
Q Consensus 989 v~r~~~ 994 (996)
++.|-+
T Consensus 337 i~gr~l 342 (835)
T PRK09238 337 IIGRGL 342 (835)
T ss_pred HHhccc
Confidence 998743
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.92 E-value=1.4e-26 Score=223.27 Aligned_cols=100 Identities=29% Similarity=0.432 Sum_probs=80.6
Q ss_pred cCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcc
Q 001914 773 FGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEK 852 (996)
Q Consensus 773 ~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~ 852 (996)
..|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~--- 38 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE--- 38 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch---
Confidence 3589999999997 7773111 134677888877653 11
Q ss_pred cchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccC
Q 001914 853 LSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 923 (996)
Q Consensus 853 ~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~ 923 (996)
.+.+.+ .+.|||+|+|||||||||||+|+++.+||+||||+||+|||+||++|+|+|||++++
T Consensus 39 -----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 -----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 122222 247999999999999999999999999999999999999999999999999999975
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.89 E-value=2.4e-24 Score=238.70 Aligned_cols=418 Identities=14% Similarity=0.061 Sum_probs=290.9
Q ss_pred HHHHHHHHhhhcCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001914 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~ 235 (996)
++..++|+++..... .+-++...+|-.+.||..+.-+..-+ .++++....+|+|++ +...+||..-+...
T Consensus 67 ~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpgs 139 (502)
T KOG0454|consen 67 MTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPGS 139 (502)
T ss_pred cccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecCc
Confidence 455677777764421 24456677788888888776553222 223344444556654 46789997655433
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001914 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+-- ......+++.|-...-.| .|- .+--+|..-+--.|.||. |+-| .+.-.| ....|+||||++.+
T Consensus 140 glv--kk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlma 206 (502)
T KOG0454|consen 140 GLV--KKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLMA 206 (502)
T ss_pred hhh--HhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHH---HHhh------hccCCCccccccccccchhhh
Confidence 211 111222233332111112 443 233445555555799996 3222 445556 46899999999999
Q ss_pred ccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001914 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~d 394 (996)
+.+.++-|+|+.++.....++...+++|.++.++++|+.+.-..++|+++.+....-..+-..+..||-+--. +|+++.
T Consensus 207 ~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~ 285 (502)
T KOG0454|consen 207 ASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMET 285 (502)
T ss_pred hhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcc
Confidence 9999999999999999999888999999999999999999999999999999888777888899999976655 899999
Q ss_pred hhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCC-CCcccEEEEEEcCCcceeec
Q 001914 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQ-ERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~-~a~Y~~~ieiDLs~veP~VA 473 (996)
|+|+|||..|-+-|-+++|+|-.|+-|-....++.. + -| +.|. .+.|...+.+|.+..+|..+
T Consensus 286 F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~----~~dg~~k~~~~dFv~~vE~~~~~si 349 (502)
T KOG0454|consen 286 FHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV----ALDGLPKSFVTDFVLPVEPLRKYSI 349 (502)
T ss_pred eeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh----eecCCchhhccceeccccccceeEE
Confidence 999999999999999999998776655443332221 1 12 1222 36789999999999999998
Q ss_pred CCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001914 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~l 553 (996)
.|+. ||.-==++- .|-.|...++|+|+-..-++.|+
T Consensus 350 ii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I---- 385 (502)
T KOG0454|consen 350 IIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI---- 385 (502)
T ss_pred Eecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH----
Confidence 8887 543111110 13345677899999998888665
Q ss_pred HHHHHHhCCCccCCceeEEEecCcHHHHH-----HHHHc---CchHHHHhcCcEEeccCccccccCC-CCCChhhhcccc
Q 001914 554 VAKKACELGLQVKPWVKTSLAPGSGVVTK-----YLLQS---GLQKYLNEQGFHIVGYGCTTCIGNS-GDLDESVASTIT 624 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~-----~l~~~---Gll~~L~~aGf~v~~~GCg~CiG~s-g~l~~~~~~~i~ 624 (996)
.+|+.++.|+.++ +...+.|-.+-++. .+-.+ -++.+++..+..=+.|-|..|.++. +++ ....+
T Consensus 386 FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad~I----~~~~~ 459 (502)
T KOG0454|consen 386 FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDADGI----FAYAR 459 (502)
T ss_pred HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCchHH----HHhhc
Confidence 5677788999877 34455555433322 12221 2566777778766789999999985 222 11112
Q ss_pred CCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccc
Q 001914 625 DNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (996)
Q Consensus 625 ~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (996)
+ +. .|+|.||||++|||.+..++|||||.+|+|+++.|+
T Consensus 460 k-e~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 K-EG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred c-cc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2 22 579999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.89 E-value=1.3e-23 Score=204.89 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=57.6
Q ss_pred eEEEeCCccCCCCchhhhhhccc------------ccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCe
Q 001914 869 TIILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHE 936 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~------------~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e 936 (996)
.|||+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 49999999999999999999998 77999999999999999999999999999862 11 34456
Q ss_pred EEEEe
Q 001914 937 RFSID 941 (996)
Q Consensus 937 ~~~Id 941 (996)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66554
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.88 E-value=8.2e-23 Score=244.33 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=120.4
Q ss_pred CcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCC
Q 001914 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (996)
Q Consensus 763 ~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~ 842 (996)
.|++ ++ .++||+|+||+|||+ +|+..+ .+.+.+.+..|.+.+
T Consensus 166 ~i~g-~V-~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~------------ 207 (844)
T TIGR00117 166 KITV-TV-FKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR------------ 207 (844)
T ss_pred heEE-EE-EEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC------------
Confidence 4554 44 599999999999998 788752 344445555554332
Q ss_pred ceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcc-------------cccCceEEEecchhhHhhh
Q 001914 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRS 909 (996)
Q Consensus 843 ~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVkAVIA~SF~RIhr~ 909 (996)
|+ ..+.-.+.++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+|||+|
T Consensus 208 -----p~-----~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfr 275 (844)
T TIGR00117 208 -----EG-----IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFN 275 (844)
T ss_pred -----cc-----HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhc
Confidence 11 01111233445533 999999999999999999999 9999 99999999999999
Q ss_pred hcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHH
Q 001914 910 NLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPF 988 (996)
Q Consensus 910 Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~y 988 (996)
|++|.|+|||+++ .+. +..++.++||+.++ .|+ ..+|++ +++.+ .++..++++++||++||
T Consensus 276 nain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~I~--n~~g~~~~~f~~--~p~~l~div~AGGli~~ 337 (844)
T TIGR00117 276 TMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------EIT--NHEGELLATFEL--KPETLLDEVRAGGRIPL 337 (844)
T ss_pred chhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------EEE--eCCCCEEEEeee--CCHHHHHHHHcCCchhh
Confidence 9999999999986 222 45678999998763 232 234543 66665 47789999999999999
Q ss_pred HHHHHh
Q 001914 989 VIRNLI 994 (996)
Q Consensus 989 v~r~~~ 994 (996)
+.-|-+
T Consensus 338 i~gr~l 343 (844)
T TIGR00117 338 IIGRGL 343 (844)
T ss_pred hhcccc
Confidence 987643
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.75 E-value=1.5e-18 Score=167.24 Aligned_cols=90 Identities=28% Similarity=0.356 Sum_probs=69.4
Q ss_pred CCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhc-cCCCCeEEEEecCCccccCCCCceEEE
Q 001914 879 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL-GLTGHERFSIDLPSKISEIRPGQDVTV 957 (996)
Q Consensus 879 ~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l-~l~g~e~~~Idl~~~~~~l~~g~~v~v 957 (996)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+.++. .+.| .++.+++++||+.+ ++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~-~~~l~~~~~g~~i~vDL~~--------~~v~- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREV-REKLAQLKPTDQVTVDLEQ--------QKII- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHH-HHHHhccCCCCEEEEEcCC--------CEEE-
Confidence 99999999999999999999999999999999999999999987643 3433 35678899999876 2333
Q ss_pred EcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 958 TTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 958 ~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
.. +++|.+.+ .+..++.+-+|
T Consensus 72 -~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 -SP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred -cC-CeEEEEEE---CHHHHHHHHhC
Confidence 22 35677776 33444555555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.74 E-value=5.3e-18 Score=203.15 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=96.2
Q ss_pred HHHHHHcCCceEEEeCCccCCCCchhhhhhcc-------------cccCceEEEecchhhHhhhhcccCcccceeccCcc
Q 001914 859 AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 925 (996)
Q Consensus 859 A~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~ 925 (996)
-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+|||+||++|.|+|||+++
T Consensus 285 i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~--- 359 (938)
T PLN00094 285 IEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD--- 359 (938)
T ss_pred HHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc---
Confidence 3677889987 888999999999999999999 9999999 999999999999999999999986
Q ss_pred chhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEE-EEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001914 926 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSF-TCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 926 ~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f-~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 993 (996)
.+. +..++.++||..++ +|. +..+|+++ ++.+ .++..++++++||++||++-|-
T Consensus 360 -v~~--i~~GD~I~id~~~G--------~I~-n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~ 414 (938)
T PLN00094 360 -VKN--LNMGDVIDIYPYEG--------VVK-RHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRG 414 (938)
T ss_pred -Hhh--cCCCCEEEEEcCCC--------EEE-ecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhccc
Confidence 222 45678899997753 222 23467777 5555 4788999999999999998764
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.22 E-value=1.5e-06 Score=90.07 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=71.5
Q ss_pred hHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccC------------ceEEEecchhhHhhhhcccCcccceeccCcc
Q 001914 858 AAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 925 (996)
Q Consensus 858 aA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lG------------VkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~ 925 (996)
+-+..|+.|.|++.| |.--|+||||--|.-...... .-.||...++.||+.-+---|-||++++-
T Consensus 45 ~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv-- 121 (204)
T PF06434_consen 45 QIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDV-- 121 (204)
T ss_dssp HHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE-----
T ss_pred HHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEec--
Confidence 346778889886666 888999999998876553322 24688899999999999999999998742
Q ss_pred chhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 926 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 926 ~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
. .+..++.++|+..++ + +...+|+. -++.+ .++...+-++|||-+|.+.-|-+
T Consensus 122 --~--~l~~Gdvi~I~p~~g--------k--i~~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 122 --S--SLNTGDVITIYPYEG--------K--IYKENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp --T--T--TT-EEEEETTTT--------E--EEETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred --c--ccCCCcEEEEecCCc--------E--EECCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHH
Confidence 2 345678888886542 2 22344431 22333 34556789999999999987643
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.74 E-value=0.018 Score=68.68 Aligned_cols=117 Identities=22% Similarity=0.316 Sum_probs=74.1
Q ss_pred HHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCc------------eEEEecchhhHhhhhcccCcccceeccCccc
Q 001914 859 AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926 (996)
Q Consensus 859 A~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGV------------kAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~ 926 (996)
-+..++.|+|.+. .|.--|+||||--|.-.....+- ..|+..-.+.||+.-+---|-||++++-
T Consensus 214 i~~lk~Kg~~vay-vgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv--- 289 (852)
T COG1049 214 IEALKQKGHPVAY-VGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV--- 289 (852)
T ss_pred HHHHhhcCceEEE-eccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee---
Confidence 3677888987544 56669999999987654333221 2345555678888888888888887632
Q ss_pred hhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001914 927 ADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 927 ~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~ 992 (996)
-.+..++.++|+--+ | +++ +..+|+.+ .+..+-++..++.+++||-+|.+.-|
T Consensus 290 ---~~l~~Gdvi~i~py~-------g-ki~-~~~~ge~v-~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ---SNLEMGDVIDIYPYE-------G-KIR-NNNTGEVV-ATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---ccccccceEEeeccC-------C-eee-ccCCCcEE-EEeecCchhHHHHHhcCCceeEEEcc
Confidence 124456777776433 2 222 12234322 22333578899999999998876544
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.35 E-value=0.044 Score=63.99 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=59.4
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 001914 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (996)
Q Consensus 530 ~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GC 605 (996)
+|+.++|| |=--|.+.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45667775 8888999999999999 89999999988776 578899999999999999999999996655
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.15 E-value=0.36 Score=55.61 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=57.7
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 001914 529 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (996)
Q Consensus 529 g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GC 605 (996)
+.++..+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345567775 7788899999999999 88887777777665 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=86.77 E-value=1.4 Score=51.57 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=56.3
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccc
Q 001914 531 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (996)
Q Consensus 531 V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG 610 (996)
+++++| .|=--|.+.++.-|++| +|++.+|.++++|. -|+.|+ +.+.|+.+.++++|..++.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556677 68888999999999999 89877666666555 567777 89999999999999999997777 663
No 62
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=25.57 E-value=55 Score=30.56 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=25.4
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 535 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 535 ~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
+|++|..|.-..+ +||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 5899999977664 577888899999998766
No 63
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.57 E-value=85 Score=31.57 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=26.8
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
|++||+|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6899999999665555 66778899999998876
No 64
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=23.20 E-value=34 Score=34.64 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred EEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccC
Q 001914 769 CLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDF 808 (996)
Q Consensus 769 vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~f 808 (996)
..-.+.++||||.|+|+ +||.. +.+.++
T Consensus 11 ~~~~~~s~idtd~i~p~----------~~~~~--~~~~~l 38 (131)
T PF00694_consen 11 AVPDFNSNIDTDQIIPA----------MFLGT--FANTGL 38 (131)
T ss_dssp EEEEHHSTGGGHHHSCG----------GHHHS--CGCTTT
T ss_pred cccccccccccccccHH----------HHhcc--ccCcch
Confidence 44568899999999998 88874 555544
No 65
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=23.01 E-value=51 Score=33.25 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.1
Q ss_pred CCCChhhhccc---cCCCeeEEeeeccCCCC
Q 001914 613 GDLDESVASTI---TDNDIVAAAVLSGNRNF 640 (996)
Q Consensus 613 g~l~~~~~~~i---~~~~~~~~sVsS~NRNF 640 (996)
|.+++.+.+-+ .+.++..+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56787777776 45577788899999999
Done!