Query 001914
Match_columns 996
No_of_seqs 403 out of 2870
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 7E-251 2E-255 2221.3 60.4 886 103-995 2-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 3E-178 1E-182 1578.7 54.0 698 159-993 35-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 1E-99 4E-104 908.0 38.6 424 158-709 381-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 2.4E-38 8.1E-43 320.3 10.0 155 770-994 7-161 (170)
5 1l5j_A Aconitate hydratase 2; 100.0 3.7E-40 1.3E-44 395.3 -3.8 280 639-994 48-353 (865)
6 2hcu_A 3-isopropylmalate dehyd 100.0 1.2E-37 4.2E-42 324.0 9.1 181 747-983 4-187 (213)
7 1v7l_A 3-isopropylmalate dehyd 100.0 7.8E-38 2.7E-42 314.5 6.8 152 770-994 7-159 (163)
8 3vba_A Isopropylmalate/citrama 100.0 1.6E-35 5.5E-40 300.2 10.4 159 767-994 7-165 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 2.2E-32 7.4E-37 282.2 6.3 161 768-983 13-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 9.8E-32 3.4E-36 270.6 6.9 155 766-983 11-169 (171)
11 2r4q_A Phosphotransferase syst 39.6 19 0.00065 33.8 3.3 33 533-566 5-37 (106)
12 2r48_A Phosphotransferase syst 37.5 19 0.00066 33.7 3.0 33 533-566 5-37 (106)
13 2kyr_A Fructose-like phosphotr 30.1 25 0.00084 33.3 2.4 33 533-566 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 25.8 32 0.0011 32.3 2.3 33 533-566 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=6.6e-251 Score=2221.29 Aligned_cols=886 Identities=61% Similarity=1.057 Sum_probs=841.2
Q ss_pred CchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeehhhhhhcccCCccccHHHHHHHHhhhcCCCCcceEeecc
Q 001914 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (996)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~R~~~~~~v~~~~vekil~~~~~~~~~~eI~~~p 182 (996)
+||..+++.|...+ +.++||+|+++++..+++|||||||||||+||||||+.+++++|+++++|..+..++.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CchhhhhcccCCCC--ceeEEEEhHHccccchhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCCCCEEEEec
Confidence 78887778887653 4799999999986678999999999999999999999999999999999987666778999999
Q ss_pred ceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhc
Q 001914 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (996)
Q Consensus 183 drvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~ 262 (996)
|||++||+||+|+++||++||++++++|+||.||||.+||++++||+||++.++..++..+|+.+||+||+|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCccccccccCCHHHHHHHHcCCcEEeecC
Q 001914 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 263 ~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vP 342 (996)
+++|+||+|+|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHhccCCCCCCCCCCCcceehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccccccccccCChhHHHHH
Q 001914 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|+|||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchHHHHHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCcceeecCCCCCCCcccccccccchhhcccccccC
Q 001914 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
+.|||++++++++++|++++++|++. .+| ++|+|+++++||||+|||+||||++|||++||++++++|.+++..++++
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhccccc
Confidence 99999998899999999999999763 234 8999999999999999999999999999999999999888776654443
Q ss_pred CCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHH
Q 001914 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
+|+....+...+..+++|+|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred ccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHH
Confidence 33311101000123467899989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHH
Q 001914 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
+||+++||+++|+++||+|++|||++||||+++++++++++|.+||+++++|||+||||+||||+..+++|||||+||||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcchhhcccccccCCCCCcccccCCCCCccccCCC
Q 001914 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPN 741 (996)
Q Consensus 662 ~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 741 (996)
|||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++++++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhh
Q 001914 742 STYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVM 821 (996)
Q Consensus 742 styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm 821 (996)
||||++||||++++..++++++++++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred cccccCCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEec
Q 001914 822 ARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 901 (996)
Q Consensus 822 ~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~ 901 (996)
+||+|+|+|+.|+|++ .+|++|+|+|+|+.|++||+|++|+++|+++|||||+|||||||||||||+++++||+||||+
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 797 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred hhhccccccccccccc-ccCCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEh
Confidence 9999999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHH
Q 001914 902 SFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFD 981 (996)
Q Consensus 902 SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~ 981 (996)
||+||||+||+|||||||+|+++++++.+++.++++++|++.+ .++||+.++++..+|++|+++++++++.|++||+
T Consensus 798 SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 874 (888)
T 2b3y_A 798 SYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874 (888)
T ss_dssp CBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHH
T ss_pred hHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHH
Confidence 9999999999999999999999999998899999999999764 4889988776556789999999999999999999
Q ss_pred hcChHHHHHHHHhc
Q 001914 982 HGGILPFVIRNLIK 995 (996)
Q Consensus 982 aGGiL~yv~r~~~~ 995 (996)
+||||||++|++++
T Consensus 875 aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 875 NGGILNYMIRKMAK 888 (888)
T ss_dssp HTSHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhhC
Confidence 99999999999863
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=2.9e-178 Score=1578.72 Aligned_cols=698 Identities=30% Similarity=0.468 Sum_probs=609.2
Q ss_pred HHHHHHHHhhhcCCC------C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001914 159 KEDVEKIIDWENSAP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 159 ~~~vekil~~~~~~~------~-~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~ 231 (996)
+|..|||++.+.... . +.+|.++||||++||+||+|++++|++| |.++ +..|.++++||++|
T Consensus 35 ~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~v~ 103 (753)
T 1c96_A 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHLIE 103 (753)
T ss_dssp CCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSSCC
T ss_pred CCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHHh-------CCCC----CCCCCceecCCCCC
Confidence 678999998876532 2 3469999999999999999999999664 8775 34567899999999
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001914 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
++..+..+ +..++.+|.|+|+||+|++++| |++|+|||+||||||++|+ +++|| ++|||||||
T Consensus 104 ~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSHT 167 (753)
T 1c96_A 104 AQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSHT 167 (753)
T ss_dssp BSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTTG
T ss_pred CCCCcccc-----hhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEeccc----------ccCCCcEEecCCCCC
Confidence 99765433 5578999999999999999999 8999999999999999995 56887 799999999
Q ss_pred cccCccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHcCcceeEEEEecCccCCC
Q 001914 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGEL 390 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~Gvvgk~VEF~G~Gv~~L 390 (996)
||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++|
T Consensus 168 ~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~L 247 (753)
T 1c96_A 168 PNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSI 247 (753)
T ss_dssp GGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGS
T ss_pred CccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhccCcccccccccccCChhHHHHHhhcCCCchHHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcce
Q 001914 391 SLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEP 470 (996)
Q Consensus 391 S~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP 470 (996)
|+++|||||||++|+|||+|+||+||+|++||+.+||++ .++++++|.+ +| .+|++|.|+++++||||+|||
T Consensus 248 S~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~leP 319 (753)
T 1c96_A 248 SCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELKP 319 (753)
T ss_dssp CHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCCC
T ss_pred CcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---hc----cCCCCCceeEEEEEEccccce
Confidence 999999999999999999999999999999999999887 5677777765 44 478999999999999999999
Q ss_pred eecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcccccCccEEEEEeecCCCCCChHHHHH
Q 001914 471 CISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLG 550 (996)
Q Consensus 471 ~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTN~s~~dl~~a 550 (996)
+||||++|||++||+|+...+.+ ++++ -+|++||||||||||++||+.|
T Consensus 320 ~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~~A 368 (753)
T 1c96_A 320 HINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMGRS 368 (753)
T ss_dssp EEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHHHH
T ss_pred eecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-----cceEEEEEecCCCCCHHHHHHH
Confidence 99999999999999999864432 1111 1588999999999999996554
Q ss_pred HHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeE
Q 001914 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (996)
Q Consensus 551 A~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~ 630 (996)
+.|+|+|+++|+ ++.||++|+|||++|++||+++||+++|+++||+|++|||++||||+++.. ++. .+++
T Consensus 369 -A~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~--- 438 (753)
T 1c96_A 369 -AAVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN--- 438 (753)
T ss_dssp -HHHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE---
T ss_pred -HHHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc--ccc--CCcc---
Confidence 566788888775 556999999999999999999999999999999999999999999998632 111 1222
Q ss_pred EeeeccCCCCCCCCC-CccCCceecChHHHHHHHhccccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcc
Q 001914 631 AAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPD 709 (996)
Q Consensus 631 ~sVsS~NRNF~GR~g-p~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~ 709 (996)
++|||+||||+|||| ...+.+|||||+|||||||+|+|++|+.+||+ .++||++|||+| |+.+|+.+ +
T Consensus 439 ~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~ 507 (753)
T 1c96_A 439 TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------A 507 (753)
T ss_dssp EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------S
T ss_pred eEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------h
Confidence 478999999999994 44467999999999999999999999999999 889999999999 88887532 3
Q ss_pred hhhcccccccCCCCCcccccCCC-CCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCC
Q 001914 710 MFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSI 788 (996)
Q Consensus 710 ~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~I 788 (996)
+|. .+++.|+..+.+. +..|.|+++|||++.||||++ ++..+++++++|+++||+||||||||||
T Consensus 508 ~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG-- 573 (753)
T 1c96_A 508 EFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG-- 573 (753)
T ss_dssp CCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG--
T ss_pred hcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCccccccceEEEeccCCcccccccccc--
Confidence 343 4567798876654 568999999999999999975 3446899999999999999999999997
Q ss_pred CCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcC--CCCCC---ceeecCCCcccchhchHHHHH
Q 001914 789 HKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP---KTVHVPTGEKLSVFDAAMKYK 863 (996)
Q Consensus 789 ~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~--~~~g~---~t~~~p~g~~~~v~daA~~y~ 863 (996)
+||++ ||+|+|++ .|.|.. +.+++ +|+|+|+|+.+.++|+|++|+
T Consensus 574 -------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~ 623 (753)
T 1c96_A 574 -------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYK 623 (753)
T ss_dssp -------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHHH
T ss_pred -------hhhcc----------------------ccchhhhh-hhhccccccccCCCcceeEEecCCcccccHHHHHHHH
Confidence 78886 46899998 777764 23443 899999999999999999999
Q ss_pred HcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCCCCeEEEEecC
Q 001914 864 SAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLP 943 (996)
Q Consensus 864 ~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~ 943 (996)
++|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. ++++|+++|+..
T Consensus 624 ~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~gl 701 (753)
T 1c96_A 624 QHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQGL 701 (753)
T ss_dssp HHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEECG
T ss_pred HhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhhh--cCCCCEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999998888875 578899999832
Q ss_pred CccccCCCCceEEE--EcCCCeE--EEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001914 944 SKISEIRPGQDVTV--TTDSGKS--FTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 944 ~~~~~l~~g~~v~v--~~~~G~~--f~~~~~~~t~~e~~~~~aGGiL~yv~r~~ 993 (996)
.++.||+.+++ +..+|++ |++.++ +|+.|++||++||||||++++.
T Consensus 702 ---~~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 702 ---KDFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp ---GGCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred ---HHcCCCceEEEEEEecCCcEEEEEEeCC-CCHHHHHHHHcCCHHHHHHHhh
Confidence 25788887765 3456754 555555 5999999999999999999864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1e-99 Score=908.00 Aligned_cols=424 Identities=23% Similarity=0.341 Sum_probs=370.2
Q ss_pred cHHHHHHHHhhhcCC---CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 001914 158 KKEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDV 234 (996)
Q Consensus 158 ~~~~vekil~~~~~~---~~~~eI~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inp~~pv~lviDHsv~~d~ 234 (996)
.++.+|||++++.+. ..+.+|.++||||++||+||+|+ |++++++|.+ .++|+. |..++||.++.+.
T Consensus 381 g~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~-------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~ 450 (865)
T 1l5j_A 381 GFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT-------RDELKDLACL--GFSADL-VMQSFCHTAAYPK 450 (865)
T ss_dssp CCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC
T ss_pred CccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHH-------HHHHHHcCCC--cCCCCe-EEEECCCCCcCCC
Confidence 578899999987653 34667999999999999999985 5566777865 567775 4558999988763
Q ss_pred cccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCccc
Q 001914 235 TRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMI 313 (996)
Q Consensus 235 ~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HqV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~~ 313 (996)
+...+++||.++|.+.+|+ .++|||+|||||++.| +++||+ +|||||||||+
T Consensus 451 ---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~ 503 (865)
T 1l5j_A 451 ---------PVDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFP 503 (865)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTC-------EECCTTSBCHHHHHGG-----------GCCTTCEEEESSTTCCCS
T ss_pred ---------HHHHHHHHHHHHHHHHcCC-------eEeCCCCceeeeeecc-----------cccccceEEeCCCCcccc
Confidence 3446788999999998886 4589999999998643 789975 69999999999
Q ss_pred CccccccccCCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhhHHHHHHHHHHHc------------CcceeEEE
Q 001914 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKH------------GVVGKFVE 381 (996)
Q Consensus 314 GalG~lg~GVGg~Eaeaamlg~~~~~~vPevVgV~L~G~L~~GVtakDlvL~i~~~Lr~~------------Gvvgk~VE 381 (996)
||| |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.++++ |++||+||
T Consensus 504 ~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vE 580 (865)
T 1l5j_A 504 IGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILE 580 (865)
T ss_dssp SSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEE
T ss_pred ccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhcccccccccCcccceeeEEEE
Confidence 976 557799999999999999999999999999999999999999999999888743 34799999
Q ss_pred EecCccCCCChhhhhhhhccCcccccccccccCC-hhHHHHHhh----------cCCC-----chHHHHHHHHHHHhhcc
Q 001914 382 FHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS-----DETVAMVEGYLRANKMF 445 (996)
Q Consensus 382 F~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D-e~T~~YL~~----------tgR~-----~~~~~~~~~y~k~~~l~ 445 (996)
| +||++||+++|+|||||++|+|||+|+||+| ++|++||+. +||. +++++.+++|++++++|
T Consensus 581 f--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l 658 (865)
T 1l5j_A 581 I--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL 658 (865)
T ss_dssp E--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred E--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHHHHHhcccee
Confidence 9 5799999999999999999999999999976 788999998 6874 35667789999999988
Q ss_pred ccCCCCCCCCcccEEEEEEcCCc-ceeecCCCCCCCcccccccccchhhcccccccCCCcCCCccccccceeeccCCCcc
Q 001914 446 VDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 524 (996)
Q Consensus 446 ~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 524 (996)
.+|++|+|+++++||||+| ||+||+|++|||++|++++++.
T Consensus 659 ----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~---------------------------------- 700 (865)
T 1l5j_A 659 ----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE---------------------------------- 700 (865)
T ss_dssp ----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC----------------------------------
T ss_pred ----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhccc----------------------------------
Confidence 4789999999999999999 8999999999999999998631
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccC
Q 001914 525 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 604 (996)
Q Consensus 525 ~l~~g~V~ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gll~~L~~aGf~v~~~G 604 (996)
.|+++|||||||+ ++|++.||.+| ||+++++.||++|+|||++|++||+++|++++|+++||+|.+||
T Consensus 701 -----~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pg 768 (865)
T 1l5j_A 701 -----KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPG 768 (865)
T ss_dssp -----BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSS
T ss_pred -----ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCc
Confidence 1447899999877 99999999988 88889999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCccCCCCC
Q 001914 605 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGK 684 (996)
Q Consensus 605 Cg~CiG~sg~l~~~~~~~i~~~~~~~~sVsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~ 684 (996)
||+||||++.+ .+|++ ++||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 769 Cg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAiaG~i---------------- 820 (865)
T 1l5j_A 769 CSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL---------------- 820 (865)
T ss_dssp CGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC----------------
T ss_pred cccccCcCCcC--------CCCCE---EEecCCcCCCCCCCCC-cceEECCHHHHHHHHhCCcC----------------
Confidence 99999998644 45675 5799999999999966 47899999999999999999
Q ss_pred eeccccCCCChHHHHHHhhccCCcc
Q 001914 685 SVYFKDIWPTTEEIAEVVQSSVLPD 709 (996)
Q Consensus 685 ~v~l~diwP~~~ei~~~~~~~v~~~ 709 (996)
|+.+|+.+++...++|+
T Consensus 821 --------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 821 --------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp --------CCHHHHHHHHHHHHTTH
T ss_pred --------CCHHHHHHHHHhhcCCc
Confidence 56788888888878774
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.4e-38 Score=320.34 Aligned_cols=155 Identities=32% Similarity=0.535 Sum_probs=128.0
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001914 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 849 (996)
++++|||||||||+|| +||+ |.|.+.+.+++|.++| |
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCChhhcChH----------HHhC---------------CCCHHHHHHHhcccCC-----------------C-
Confidence 6789999999999997 8885 3466778888998875 1
Q ss_pred CcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhh
Q 001914 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~ 929 (996)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TD- 108 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GG-
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HH-
Confidence 12344442 5899999999999999999999999999999999999999999999999999997 34
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
.+.++++++|++.. | +|+ ...+|++|++ +..++.+++++++||+|||++++++
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~--~~~~~~~~~~l~aGGll~~~~~~~~ 161 (170)
T 2pkp_A 109 -EIKDGDIVEIDLDK-------E-EIV-ITNKNKTIKC--ETPKGLEREILAAGGLVNYLKKRKL 161 (170)
T ss_dssp -GCCTTCEEEEETTT-------T-EEE-EGGGTEEEEC--BCCCHHHHHHHHTTSHHHHHHHHHH
T ss_pred -HcCCCcEEEEECCC-------C-EEE-ECCCCeEEEE--EeCCHHHHHHHHcCCHHHHHHHHHH
Confidence 35678999998654 3 333 2356777766 3469999999999999999999875
No 5
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=3.7e-40 Score=395.26 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=218.1
Q ss_pred CCCCCCCCc------cCCceecChHHHHHHHhccccccCCCCCCCccCCCCCee-ccccCCCChHHHH----HHhhc-cC
Q 001914 639 NFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV-YFKDIWPTTEEIA----EVVQS-SV 706 (996)
Q Consensus 639 NF~GR~gp~------~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v-~l~diwP~~~ei~----~~~~~-~v 706 (996)
=|++|+.|. ++++||+|| |.+++..+.|+.++.+++||+...|..| +|.|+| +.+|+. +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478899998 889999999 7799999999999999999999999999 899999 555665 56655 45
Q ss_pred CcchhhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCC
Q 001914 707 LPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAG 786 (996)
Q Consensus 707 ~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG 786 (996)
-.++|.+.|+....||+.|+++ ++.|.+.+-|..+|+.- +.|++ + +.++||||||||||||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~-v~~~~~nIdTD~IiPa- 185 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-T-VFKVTGETNTDDLSPA- 185 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-E-EEEEEEEEEHHHHSCG-
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC----------ceEEE-E-EEecCCCCchhccCch-
Confidence 6899999999999999999875 78999887666666542 34555 3 4668999999999998
Q ss_pred CCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcC
Q 001914 787 SIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAG 866 (996)
Q Consensus 787 ~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g 866 (996)
+||..+ + +.+.+.++.|.++|. .+.++ ++. +.- -+...++++..|
T Consensus 186 ---------~~l~~~-~-------------d~~~~a~~lf~~~r~--~~~p~--------f~~-~~~-~~~~i~~~~~~G 230 (865)
T 1l5j_A 186 ---------PDAWSR-P-------------DIPLHALAMLKNARE--GIEPD--------QPG-VVG-PIKQIEALQQKG 230 (865)
T ss_dssp ---------GGGGGT-T-------------SHHHHGGGTTCSCBT--TBCCS--------BTT-TBC-SHHHHHHHHTTS
T ss_pred ---------hhhhcC-C-------------CHHHHHHHHhhcccc--CCCcc--------ccc-ccc-chhhhhhhhcCC
Confidence 898432 2 334456778887661 11111 111 110 122346777776
Q ss_pred CceEEEeCCccCCCCchhhhhhcc-------------cccCceEEEecchhhHhhhhcccCcccceeccCccchhhccCC
Q 001914 867 HGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLT 933 (996)
Q Consensus 867 ~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~l~l~ 933 (996)
. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+|||+++ .+. +.
T Consensus 231 ~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l~ 302 (865)
T 1l5j_A 231 F-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--LN 302 (865)
T ss_dssp S-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--CC
T ss_pred C-EEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhh--cC
Confidence 4 4899999999999999999999 9999 999999999999999999999999995 233 45
Q ss_pred CCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 934 GHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 934 g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
.+++++||+.++ +|+ ...+|++ +.+.+ +++.+++++++||++||+++|.+
T Consensus 303 ~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 303 MGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp TTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCEEEEECCCC--------EEE-EcCCCeEEEEEEe--CCHHHHHHHHcCChhhhhhcchH
Confidence 678999998752 333 2356655 65554 68899999999999999999865
No 6
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-37 Score=324.04 Aligned_cols=181 Identities=23% Similarity=0.362 Sum_probs=134.8
Q ss_pred CCCCCCcCCCCCCCCCCc--ccceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccc
Q 001914 747 EPPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARG 824 (996)
Q Consensus 747 ~pp~f~~~~~~~~~~~~i--~~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg 824 (996)
-.|||+++.......+.+ ..++++.+.|||||||||||| +||+. +++++ |.++
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred cccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHH
Confidence 358888888776665555 567899888999999999998 99975 55555 4799
Q ss_pred cccchhhhhhhcCCCCCCceeecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchh
Q 001914 825 TFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFE 904 (996)
Q Consensus 825 ~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~ 904 (996)
+|+|+|+.|+ +|.+++. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+
T Consensus 59 ~f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFA 122 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFG 122 (213)
T ss_dssp TTHHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBC
T ss_pred Hhhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHH
Confidence 9999999886 4544431 22232 35653 5899999999999999999999999999999999999
Q ss_pred hHhhhhcccCcccceeccCccchhhc-cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 905 RIHRSNLVGMGIIPLCFKAGEDADSL-GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 905 RIhr~Nli~~GiLpL~f~~~~~~~~l-~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
||||+||+|||||||+|++++ .+.| ....+++++||+.+ ++|+ ..+| ++.+. + ++..++++.+|
T Consensus 123 rIF~~N~in~GlLpl~~~~~~-~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 123 DIHYNNDLNNGILPIIQPKEV-RDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHHTTTCEEEECCHHH-HHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcEEeCHHH-HHHHhccCCCCEEEEECCC--------CEEE--ECCc-eEEEe--C-CHHHHHHHHcC
Confidence 999999999999999997543 3444 23667889999886 3444 3456 66655 3 78899999988
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=7.8e-38 Score=314.53 Aligned_cols=152 Identities=34% Similarity=0.554 Sum_probs=124.6
Q ss_pred EeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001914 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 849 (996)
++++|||||||||+|| +||+ |.|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEEcCCCCChhccchH----------HHhC---------------CCCHHHHHHHhCCccC-----------------c-
Confidence 6799999999999998 7875 3466778888888765 1
Q ss_pred CcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccchhh
Q 001914 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~~~ 929 (996)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HH-
Confidence 12344543 4799999999999999999999999999999999999999999999999999997 33
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
.++++++++|++.. | +| + +|++ |++. ..++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v--~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EV--R--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EE--E--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HcCCCcEEEEEccC-------C-EE--E--CCcEEEEEE--cCCHHHHHHHHcCCHHHHHHHHHh
Confidence 35678999998764 2 33 2 5655 6552 358999999999999999999763
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-35 Score=300.23 Aligned_cols=159 Identities=26% Similarity=0.493 Sum_probs=127.8
Q ss_pred ceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceee
Q 001914 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (996)
Q Consensus 767 a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~ 846 (996)
.+++ ++|||||||+|+|+ +||+. .|.+.+.+.+|.++|
T Consensus 7 g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~---------------- 44 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD---------------- 44 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC----------------
T ss_pred EEEE-EeCCCcchhhcCcH----------HHhCc---------------CCHHHHHHhhCcCCC----------------
Confidence 3554 88999999999998 89852 355677888898875
Q ss_pred cCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccc
Q 001914 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926 (996)
Q Consensus 847 ~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~ 926 (996)
|+ .+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++ ++
T Consensus 45 -p~--------F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~ 110 (176)
T 3vba_A 45 -PD--------FPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GI 110 (176)
T ss_dssp -TT--------HHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--TH
T ss_pred -cc--------HHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hH
Confidence 11 2456653 4799999999999999999999999999999999999999999999999998876 33
Q ss_pred hhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001914 927 ADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 927 ~~~l~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r~~~ 994 (996)
++. +..+++++||+.+ ++|+. ..+|+++.+. . .++.+++++++||++||++++..
T Consensus 111 ~~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~-~-l~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 111 SEK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQ-K-LPEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HHH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECC-C-CCHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHh--cCCCCEEEEECCC--------CEEEe-CCCCeEEEEe-c-CCHHHHHHHHcCCHHHHHHHhcc
Confidence 444 4567889999865 23332 3467788666 2 48999999999999999999864
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=99.97 E-value=2.2e-32 Score=282.20 Aligned_cols=161 Identities=23% Similarity=0.368 Sum_probs=121.5
Q ss_pred eEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCceeec
Q 001914 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (996)
Q Consensus 768 ~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~ 847 (996)
+++.+-+||||||+|+|+ |||+. +++++ +.+++|.++|+.. +|...
T Consensus 13 ~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~-------------lg~~~f~~~R~~~---~g~~~------ 58 (203)
T 3q3w_A 13 IACPLEYANIDTDQIIPK----------QFLLA--VSKQG-------------FGKHLFHDLRYLD---DKESV------ 58 (203)
T ss_dssp EEEEECCSSCBHHHHSCG----------GGCBS--SCSSC-------------SGGGTTHHHHBSS---SSSCS------
T ss_pred EEEECCCcccChhhcchH----------HHcCc--CCHHH-------------HHHhhhhhhhccc---cCCCC------
Confidence 566556699999999998 99974 55555 4688999999732 12111
Q ss_pred CCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCccch
Q 001914 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927 (996)
Q Consensus 848 p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~~~ 927 (996)
| ...++.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.. .
T Consensus 59 ~--~pdF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~~-~ 131 (203)
T 3q3w_A 59 L--NMDFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKDE-V 131 (203)
T ss_dssp B--CTTSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHHH-H
T ss_pred C--CCChhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHHH-H
Confidence 0 11244444 45654 4799999999999999999999999999999999999999999999999999997643 2
Q ss_pred hhc-c---CCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 928 DSL-G---LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 928 ~~l-~---l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
+.| . ...+++++||+.. ++|+ . +|+++.+.+ .+..++.+.+|
T Consensus 132 ~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 132 LEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCEEEEECCC--------CEEE--E-CCEEEEEEe---CHHHHHHHHcC
Confidence 333 1 1567889999986 3443 2 567776664 67888888887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.97 E-value=9.8e-32 Score=270.64 Aligned_cols=155 Identities=23% Similarity=0.354 Sum_probs=118.4
Q ss_pred cceEEeecCCCCCcCccccCCCCCCCChhhhHHHHcCCCcccCccccCCCCchhhhccccccchhhhhhhcCCCCCCcee
Q 001914 766 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTV 845 (996)
Q Consensus 766 ~a~vL~~~gD~itTDhIsPaG~I~~~spag~~L~~~gv~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~~~~g~~t~ 845 (996)
..+++.+.|||||||+|+|+ +||+. +++ +.|.+++|.++|..
T Consensus 11 ~G~~~~l~~dnIdTD~IiPa----------~~L~~--~~~-------------~~l~~~~f~~~R~~------------- 52 (171)
T 3h5j_A 11 SGIGVPLRRSNVDTDQIIPA----------VFLKR--VTR-------------TGFEDGLFAGWRSD------------- 52 (171)
T ss_dssp EEEEEEECCCSCCHHHHSCG----------GGTTC--CSC-------------SCCGGGTTTTGGGS-------------
T ss_pred EEEEEEccCCccCcccCCch----------hhcCC--CCH-------------HHHHHHhhccCcCC-------------
Confidence 34788888999999999998 89874 333 34578899999821
Q ss_pred ecCCCcccchhchHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccCceEEEecchhhHhhhhcccCcccceeccCcc
Q 001914 846 HVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 925 (996)
Q Consensus 846 ~~p~g~~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVkAVIA~SF~RIhr~Nli~~GiLpL~f~~~~ 925 (996)
|+ ++.+. ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++..
T Consensus 53 --p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~~ 122 (171)
T 3h5j_A 53 --PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDD 122 (171)
T ss_dssp --TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHHH
T ss_pred --cC----ccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHHH
Confidence 11 23222 35653 3799999999999999999999999999999999999999999999999999998543
Q ss_pred chhhc----cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001914 926 DADSL----GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 926 ~~~~l----~l~g~e~~~Idl~~~~~~l~~g~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
.+.| ....+++++||+.. ++|+ . +|+++.+.+ .+..++.|.+|
T Consensus 123 -~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 123 -VELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp -HHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred -HHHHHHHhhcCCCcEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHhC
Confidence 3333 11567889999886 2343 2 566676665 56777777766
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=39.58 E-value=19 Score=33.83 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=25.9
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---..| ||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6789999999776655 67888899999998876
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=37.46 E-value=19 Score=33.75 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.1
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---.. +||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTY-MAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 689999999966554 477888899999998876
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=30.08 E-value=25 Score=33.32 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---.. .||+.|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTy-MAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTF-MAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHH-HHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 788999999976655 477888888889998866
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.77 E-value=32 Score=32.26 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=26.7
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 001914 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ia~IgSCTN~s~~dl~~aA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---..| ||+.|-+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 6789999999766655 67778888888998866
Done!