BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001915
(996 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 228/511 (44%), Positives = 316/511 (61%), Gaps = 35/511 (6%)
Query: 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549
R PV+TIMGHVDHGKT+LL++IR TKVA+ EAGGITQ IGAY V+ +G + FLDT
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-NGMI---TFLDT 58
Query: 550 PGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609
PGH AF +MRARGA+ T PQT EAI HAKAA VP+V+A+NKIDK A
Sbjct: 59 PGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEA 118
Query: 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNA 669
+P+RV ELS G++PE+WGG+ V +SA G +D+LL+ I+L AE+ ELKA A
Sbjct: 119 DPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMA 178
Query: 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK-------------------- 709
G VIE+ L K +GPVAT +++ GTL KGD+V+CG +G+
Sbjct: 179 SGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIP 238
Query: 710 --IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXX 767
I+GL+GVP AGDE VV ARE A R R +++ +
Sbjct: 239 VEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQ--------QKSKLENM 290
Query: 768 XXXXXXXDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAV 827
++H++N+++K DVQGS+EA+ +L L D V +K + G I+ +D LA
Sbjct: 291 FANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAA 350
Query: 828 ASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGS 887
AS AI++GFNV+A S + + + +++R Y VIY+LID+++ AM G+L +Q IG
Sbjct: 351 ASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410
Query: 888 AEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNA 946
AEVR +F S G +AGCMV+EG + + IRV+RD ++ G L+SLRR K++V EV
Sbjct: 411 AEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRN 470
Query: 947 GLECGVGAADYDDLEEGDIIEAFNSIQRKRT 977
G+ECG+G +Y+D+ GD+IE F I+ +RT
Sbjct: 471 GMECGIGVKNYNDVRTGDVIEVFEIIEIQRT 501
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 317 bits (812), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 202/519 (38%), Positives = 276/519 (53%), Gaps = 59/519 (11%)
Query: 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549
R PV+TIMGHVDHGKTTLLD +RKT+VAA EAGGITQ IGA+ V +P K+ FLDT
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKI---TFLDT 59
Query: 550 PGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609
PGH AF AMRARG +VT QT E+I HAK A VPIV+AINK DK A
Sbjct: 60 PGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA 119
Query: 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNA 669
+PE+V +EL + ++ ED+GGD+ V +SAL GE + L E + +AE+ ELKA+P
Sbjct: 120 DPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAV 179
Query: 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK-------------------- 709
+GTVIE+ K +GPV T I+Q GTL+KG ++V G+++ K
Sbjct: 180 EGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMP 239
Query: 710 --IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSL---------------RNERISAKA 752
IIG +P AGDE V+S ARE + R + R E A
Sbjct: 240 VGIIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHR 299
Query: 753 GDGXXXXXXXXXXXXXXXXXXXDLHQ--------------LNVIMKVDVQGSIEAVRQAL 798
D Q L VI+K DV GS+EA+ +
Sbjct: 300 KDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVM 359
Query: 799 QVLPQDN-VTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRL 857
+ L + GDIS +DV+LA +I GFNV A ++ A KGV+I+L
Sbjct: 360 DTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKL 419
Query: 858 YRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGR----VAGCMVSEGKLVK 913
+++IY LI+D++ + L + E+ PIG A + A FS G+ VAGC V +G++ K
Sbjct: 420 HKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEK 479
Query: 914 GCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGV 952
++IR+G + G L SL+ K++ V G++CG+
Sbjct: 480 QKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGL 518
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 127/176 (72%), Gaps = 4/176 (2%)
Query: 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549
RPPV+TIMGHVDHGKTTLLD IR +KV EAGGITQ IGAY+V V D K+ FLDT
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKI---TFLDT 62
Query: 550 PGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609
PGHEAF MRARGA+VT PQT EAI HAKAA VPI++AINK+DK A
Sbjct: 63 PGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122
Query: 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANP 665
NP+RVMQEL L+PE+WGGD ++SA E +D LLE I+LV+E++ELKANP
Sbjct: 123 NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELKANP 178
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 53/263 (20%)
Query: 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----------- 538
R P+++++GHVDHGKTTLLDHIR + VA+ EAGGITQ IGA ++P+D
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA--TEIPMDVIEGICGDFLK 61
Query: 539 -----GKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAA 593
L F+DTPGHEAF +R RG + +PQT EA+ +
Sbjct: 62 KFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY 121
Query: 594 GVPIVIAINKIDK---------------DGANPERVMQELSS-----IGLMPE------- 626
P V+A NKID+ +V Q+L + +G + E
Sbjct: 122 RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESER 181
Query: 627 -----DWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGL 678
D+ + ++ ISA+ GE + +LL +M +A+ ++LK A+GT++E
Sbjct: 182 FDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241
Query: 679 HKSKGPVATFILQNGTLKKGDVV 701
G ++ +G L+K D +
Sbjct: 242 ETGLGMTIDAVIYDGILRKDDTI 264
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 775 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDV---DLAVASKA 831
D + V++K D GS+EAV + L+ ++ + + GD+S DV +A+
Sbjct: 347 DTDEAGVVVKADTLGSLEAVVKILR-----DMYVPIKVADIGDVSRRDVVNAGIALQEDR 401
Query: 832 I---ILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEE---QVPI 885
+ I+ FNVK S N +++ VIY L+++ + G+ E ++ + I
Sbjct: 402 VYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAII 461
Query: 886 GSAEVRAI----FSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENV 941
A +R I F + G V G + +G + + DG+T VG ++S++ EN+
Sbjct: 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPL-MNDDGET--VGTVESMQDKGENL 518
Query: 942 KEVNAGLECGVGAAD 956
K + G + + D
Sbjct: 519 KSASRGQKVAMAIKD 533
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 124/261 (47%), Gaps = 49/261 (18%)
Query: 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKV--------------QV 535
R P+++++GHVDHGKTTLLDHIR + VA+ EAGGITQ IGA ++ +
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKF 63
Query: 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV 595
+ L F+DTPGHEAF +R RG + +PQT EA+ +
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT 123
Query: 596 PIVIAINKIDK------DGANPE---------RVMQELSS-----IGLMPE--------- 626
P V+A NKID+ P +V Q+L + +G + E
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 627 ---DWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLHK 680
D+ + ++ ISA+ GE + +LL + +A+ ++LK A+GT++E
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEEDSPARGTILEVKEET 243
Query: 681 SKGPVATFILQNGTLKKGDVV 701
G ++ +G L+K D +
Sbjct: 244 GLGXTIDAVIYDGILRKDDTI 264
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 775 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDV---DLAVASKA 831
D + V++K D GS+EAV +++L V +K + GD+S DV +A+
Sbjct: 347 DTDEAGVVVKADTLGSLEAV---VKILRDXYVPIK--VADIGDVSRRDVVNAGIALQEDR 401
Query: 832 I---ILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVP---I 885
+ I+ FNVK S N +++ VIY L ++ + G+ E +++ I
Sbjct: 402 VYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLXEEYEEWVRGIEEEKKKKWXEAII 461
Query: 886 GSAEVRAI----FSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENV 941
A +R I F + G V G + +G + DG+T VG ++S + EN+
Sbjct: 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLXN-DDGET--VGTVESXQDKGENL 518
Query: 942 KEVNAGLECGVGAAD 956
K + G + D
Sbjct: 519 KSASRGQKVAXAIKD 533
>pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus
Stearothermophilus Translation Initiation Factor If2
Length = 135
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 71/98 (72%)
Query: 775 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIIL 834
++ +LN+I+K DVQGS+EA+ ALQ + + V +K + A G I+ SD+ LA AS AI++
Sbjct: 38 EMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVI 97
Query: 835 GFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAM 872
GFNV+ + K A+++ V+IRL+R+IY++I+++ AM
Sbjct: 98 GFNVRPDANAKRAAESEKVDIRLHRIIYNVIEEIEAAM 135
>pdb|1D1N|A Chain A, Solution Structure Of The Fmet-Trnafmet Binding Domain Of
Becillus Stearothermophillus Translation Initiation
Factor If2
Length = 99
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 880 EEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK 938
EE+V IG AEVR F S G +AGC V++GK+ + +R+IR G V+ G +DSL+R K
Sbjct: 2 EEKV-IGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYK 60
Query: 939 ENVKEVNAGLECGVGAADYDDLEEGDIIEAF 969
++V+EV G ECG+ +++D++EGD+IEA+
Sbjct: 61 DDVREVAQGYECGLTIKNFNDIKEGDVIEAY 91
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 494 LTIMGHVDHGKTTLLDHI---------RKTKVAAAEA------GGITQGIGAYKVQVPV- 537
+I+ H+DHGK+TL D I R+ + ++ GIT I A V +
Sbjct: 7 FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYK 64
Query: 538 --DGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV 595
DG+ F+DTPGH F +R QT A +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 596 PIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654
+V +NKID A+PERV +E+ I G+ D V+ SA G V D+LE L
Sbjct: 125 EVVPVLNKIDLPAADPERVAEEIEDIVGIDATD------AVRCSAKTGVGVQDVLER--L 176
Query: 655 VAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVV 701
V ++ + +P + +I++ G V+ ++NGTL+KGD V
Sbjct: 177 VRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 494 LTIMGHVDHGKTTLLDHI---------RKTKVAAAEA------GGITQGIGAYKVQVPV- 537
+I+ H+DHGK+TL D I R+ + ++ GIT I A V +
Sbjct: 7 FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYK 64
Query: 538 --DGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV 595
DG+ F+DTPGH F +R QT A +
Sbjct: 65 ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL 124
Query: 596 PIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654
+V +NKID A+PERV +E+ I G+ D V+ SA G V D+LE L
Sbjct: 125 EVVPVLNKIDLPAADPERVAEEIEDIVGIDATD------AVRCSAKTGVGVQDVLER--L 176
Query: 655 VAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVV 701
V ++ + +P + +I++ G V+ ++NGTL+KGD V
Sbjct: 177 VRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 494 LTIMGHVDHGKTTLLDHIRKTKVAAAE---------------AGGITQGIGA----YKVQ 534
I+ HVDHGK+TL D + + A +E GIT + A YK +
Sbjct: 9 FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK 68
Query: 535 VPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAG 594
DG +DTPGH F +R QT A
Sbjct: 69 ---DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 595 VPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653
+ I+ INKID A+ +RV +++ + GL PE+ + SA +G ++++LE I
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEE------AILASAKEGIGIEEILEAI- 178
Query: 654 LVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVV 702
V + K +P + K + ++ +G VA + +G +K GD ++
Sbjct: 179 -VNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 494 LTIMGHVDHGKTTLLDHIRKTKVAAAE---------------AGGITQGIGA----YKVQ 534
I+ HVDHGK+TL D + + A +E GIT A YK +
Sbjct: 9 FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYKAK 68
Query: 535 VPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAG 594
DG +DTPGH F +R QT A
Sbjct: 69 ---DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 595 VPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653
+ I+ INKID A+ +RV +++ + GL PE+ + SA +G ++++LE I
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEE------AILASAKEGIGIEEILEAI- 178
Query: 654 LVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699
V + K +P + K + ++ +G VA + +G +K GD
Sbjct: 179 -VNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGD 223
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556
+GHVDHGKTTL I T V A GG +GI V D + +D PGH +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARGITINTSHVEYDTPTRHYAHVDCPGHADYV 74
Query: 557 AMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVM 615
GA PQT E I + GVP I++ +NK D +
Sbjct: 75 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLEL 134
Query: 616 QELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 135 VEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 175
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 29/193 (15%)
Query: 496 IMGHVDHGKTTLLDHI----RKTKVAAAEAG-GITQGIGAYKVQVPVDGKLQPC------ 544
++GHVDHGKTTL+ I K+ AE G+ + + V + + C
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYV-TEPSCKSCGSDDEP 71
Query: 545 ------VFLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAIAHAKAAGVP- 596
F+D PGHE A GA + +PQT E GV
Sbjct: 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN 131
Query: 597 IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKVDDLLETIMLV 655
++I NK+D + E + + I + W ++P++ +SAL +D L+E I
Sbjct: 132 LIIVQNKVDV--VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI--- 186
Query: 656 AELQELKANPHRN 668
+E P+R+
Sbjct: 187 ---EEYIKTPYRD 196
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------- 540
++GHVDHGKTTL+ I + I G + V K
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 72
Query: 541 -------LQPCVFLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAIAHAKA 592
L+ F+D PGHE A GA + +PQT E
Sbjct: 73 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI 132
Query: 593 AGVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKVDDLLE 650
GV ++I NK+D + E + + I + W ++P++ +SAL +D L+E
Sbjct: 133 IGVKNLIIVQNKVDV--VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIE 190
Query: 651 TIMLVAELQELKANPHRN 668
I +E P+R+
Sbjct: 191 GI------EEYIKTPYRD 202
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 15/215 (6%)
Query: 494 LTIMGHVDHGKTTL---LDHIRKT----KVAAAEAGGITQGIG--AYKVQVPVDGKLQPC 544
L I GH+DHGKTTL L I T K+ ++ GIT IG A+K++
Sbjct: 22 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN------YRI 75
Query: 545 VFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKI 604
+D PGH A + + QT E + +PI++ I K
Sbjct: 76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKS 135
Query: 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKAN 664
D G + + + L + ++ ISA G VD+L I+ E+ N
Sbjct: 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRN 195
Query: 665 PHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699
K + A K G V T + G +K GD
Sbjct: 196 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGD 230
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 496 IMGHVDHGKTTLLDH---IRKTKVAAAEAGGITQGIGAYKVQVPV------------DGK 540
++GHVDHGKTTL+ I +K + G+T +G + + V +
Sbjct: 14 VVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPS 73
Query: 541 LQPC------------VFLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAI 587
+ C F+D PGHE A GA + +PQT E
Sbjct: 74 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 133
Query: 588 AHAKAAGVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKV 645
GV ++I NK+D + E + + I + W ++P++ +SAL +
Sbjct: 134 VALGIIGVKNLIIVQNKVDV--VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 191
Query: 646 DDLLETIMLVAELQELKANPHRN 668
D L+E I +E P+R+
Sbjct: 192 DSLIEGI------EEYIKTPYRD 208
>pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial
Translational Initiationfactor 2
Length = 120
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 883 VPIGSAEVRAIFSSGSGR----VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK 938
PIG A + A F+ G+ VA C V +G+L + ++IR+G+ + G L SL+ K
Sbjct: 8 YPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHK 67
Query: 939 ENVKEVNAGLECGV 952
+++ + G++CG+
Sbjct: 68 DDISVIKTGMDCGL 81
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 496 IMGHVDHGKTTLLDH---IRKTKVAAAEAGGITQGIGAYKVQVPV------------DGK 540
++GHVDHGKTTL+ I +K + G+T +G + + V +
Sbjct: 13 VVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPS 72
Query: 541 LQPC------------VFLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAI 587
+ C F+D PGHE A GA + +PQT E
Sbjct: 73 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 132
Query: 588 AHAKAAGVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKV 645
GV ++I NK+D + E + + I + W ++P++ +SAL +
Sbjct: 133 VALGIIGVKNLIIVQNKVDV--VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 646 DDLLETIMLVAELQELKANPHRN 668
D L+E I +E P+R+
Sbjct: 191 DSLIEGI------EEYIKTPYRD 207
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 602 NKID-----KDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654
NK D + E ++EL S P G D P+V+ SALK + D E +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSALKALEGDAEWEAKIL 474
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 18 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 75
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 76 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 135
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 136 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 195
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 196 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 252
Query: 700 VV 701
V
Sbjct: 253 EV 254
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 96/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 302 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 474
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGIT---------QGIGAYKVQVPVDGKL 541
IM H+D GKTT + I R K+ G +GI +
Sbjct: 15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQT A GVP ++ +
Sbjct: 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFV 134
Query: 602 NKIDKDGANPERVMQEL 618
NK+DK GAN E + L
Sbjct: 135 NKMDKLGANFEYSVSTL 151
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T V AAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T V AAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 33/199 (16%)
Query: 496 IMGHVDHGKTTL---LDHIRKTKVAAAEAGGITQGIGAYKVQV---------------PV 537
++GHVDHGKTTL L + + GIT IG ++ P
Sbjct: 16 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPY 75
Query: 538 DGK----LQPCVFLDTPGHEAF-GAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKA 592
G ++ F+D+PGHEA M A + + RPQT E + +
Sbjct: 76 CGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI 135
Query: 593 AGVP-IVIAINKIDKDGANPERVMQELSSIG-LMPEDWGGDIPMVQISALKGEKVDDLLE 650
G I+IA NKI+ + E+ ++ I + + P++ ISAL G +D
Sbjct: 136 IGQKNIIIAQNKIEL--VDKEKALENYRQIKEFIKGTVAENAPIIPISALHGANID---- 189
Query: 651 TIMLVAELQELKANPHRNA 669
+LV ++E P R++
Sbjct: 190 --VLVKAIEEFIPTPKRDS 206
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 189
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 135
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 190
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 189
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 17 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 189
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 18 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 135
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 190
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 547 LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDK 606
+DTPGH F R RV PQ+ A GVP ++ +NK+D+
Sbjct: 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149
Query: 607 DGANPERVMQELSS-IGLMP----------EDWGGDIPMVQISAL 640
GAN RV++++ +G P E++ G + ++++ A+
Sbjct: 150 QGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAI 194
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI--------------TQGIGAYKVQVPVDGKLQ 542
+GHVDHGKTTL I T V A GG +GI V D +
Sbjct: 9 IGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 66
Query: 543 PCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIAI 601
+D PGH + GA PQT E I + GVP I++ +
Sbjct: 67 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 126
Query: 602 NKIDKDGANPERVMQELSSIGLMPE-DW-GGDIPMVQISALKGEKVDDLLETIML 654
NK D + E+ L+ + D+ G D P+V+ SALK + D E +L
Sbjct: 127 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKIL 181
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T V AAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 42/242 (17%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T V AAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D PGH + GA PQT E I A+ GVP IV+
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL---------------KGE 643
+NK+D D + V E+ + E G ++P+++ SAL + E
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 644 KVDDLLETIMLVAELQELKANPHRNAKGTVI----EAGLHKSKGPVATFILQNGTLKKGD 699
VD + E L+ + E P R+ + + +G VAT ++ G +K GD
Sbjct: 195 WVDKIWE---LLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGD 251
Query: 700 VV 701
V
Sbjct: 252 EV 253
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 26/143 (18%)
Query: 496 IMGHVDHGKTTLLDHIRKTKVAAAEAG------------------GIT--QGIGAYKVQV 535
++ HVD GKTTL + + A E G GIT GI +++ +
Sbjct: 7 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE- 65
Query: 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV 595
+ K+ +DTPGH F A R V + QT + G+
Sbjct: 66 --NTKVN---IIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 120
Query: 596 PIVIAINKIDKDGANPERVMQEL 618
P + INKID++G + V Q++
Sbjct: 121 PTIFFINKIDQNGIDLSTVYQDI 143
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGIT---------QGIGAYKVQVPVDGKL 541
I+ H+D GKTT + I R K+ G +GI +
Sbjct: 15 IIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQT A GVP ++ +
Sbjct: 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFV 134
Query: 602 NKIDKDGANPERVMQEL 618
NK+DK GAN E + L
Sbjct: 135 NKMDKLGANFEYSVSTL 151
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 497 MGHVDHGKTTL---LDHIRKTKVAAAEAGGITQGIGAYKVQV---------------PVD 538
+GHVDHGKTTL L + + GIT IG ++ P
Sbjct: 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 75
Query: 539 GKLQPCV----FLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAIAHAKAA 593
G V F+D PGHEA GA + RPQT E + +
Sbjct: 76 GHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQII 135
Query: 594 GVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKVDDLLET 651
G I+IA NKI+ + E+ ++ I E + P++ ISAL G +D L++
Sbjct: 136 GQKNIIIAQNKIEL--VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKA 193
Query: 652 I 652
I
Sbjct: 194 I 194
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 496 IMGHVDHGKTTL---LDHIRKTKVAAAEAGGITQGIGAYKVQV---------------PV 537
++GHVDHGKTTL L + + GIT IG ++ P
Sbjct: 15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 74
Query: 538 DGKLQPCV----FLDTPGHEAF-GAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKA 592
G V F+D PGHEA M A + + RPQT E + +
Sbjct: 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI 134
Query: 593 AGVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKVDDLLE 650
G I+IA NKI+ + E+ ++ I E + P++ ISAL G +D L++
Sbjct: 135 IGQKNIIIAQNKIEL--VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVK 192
Query: 651 TI 652
I
Sbjct: 193 AI 194
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGIT---------QGIGAYKVQVPVDGKL 541
IM H+D GKTT + I R K+ G +GI +
Sbjct: 15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH R RV PQT A GVP ++ +
Sbjct: 75 HRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFV 134
Query: 602 NKIDKDGANPERVMQEL 618
NK+DK GAN E + L
Sbjct: 135 NKMDKLGANFEYSVSTL 151
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 27/182 (14%)
Query: 496 IMGHVDHGKTTL---LDHIRKTKVAAAEAGGITQGIGAYKVQV---------------PV 537
++GHVDHGKTTL L + + GIT IG ++ P
Sbjct: 15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 74
Query: 538 DGKLQPCV----FLDTPGHEAF-GAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKA 592
G V F+D PGHEA M A + + RPQT E + +
Sbjct: 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI 134
Query: 593 AGVP-IVIAINKIDKDGANPERVMQELSSIGLMPE-DWGGDIPMVQISALKGEKVDDLLE 650
G I+IA NKI+ + E+ ++ I E + P++ ISAL G +D L++
Sbjct: 135 IGQKNIIIAQNKIEL--VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVK 192
Query: 651 TI 652
I
Sbjct: 193 AI 194
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 31/188 (16%)
Query: 547 LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDK 606
+DTPGH F R RV +PQ+ A VP + +NK+D+
Sbjct: 86 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDR 145
Query: 607 DGANPERVMQELSS-IGLMP----------EDWGGDIPMVQISALKGEKVDD--LLETIM 653
GAN +V+ ++ + +G P E + G + +V++ A+ D E
Sbjct: 146 MGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYED 205
Query: 654 LVAELQELKANPHRNAKGTVIEAG---LHKS-----------KGPVATFILQNGTLKKGD 699
+ A++ EL H+N + EA + K KG + +L N +
Sbjct: 206 IPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEII---- 261
Query: 700 VVVCGEAF 707
+V CG AF
Sbjct: 262 LVTCGSAF 269
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 31/188 (16%)
Query: 547 LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDK 606
+DTPGH F R RV +PQ+ A VP + +NK+D+
Sbjct: 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDR 146
Query: 607 DGANPERVMQELSS-IGLMP----------EDWGGDIPMVQISALKGEKVDD--LLETIM 653
GAN +V+ ++ + +G P E + G + +V++ A+ D E
Sbjct: 147 MGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYED 206
Query: 654 LVAELQELKANPHRNAKGTVIEAG---LHKS-----------KGPVATFILQNGTLKKGD 699
+ A++ EL H+N + EA + K KG + +L N +
Sbjct: 207 IPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEII---- 262
Query: 700 VVVCGEAF 707
+V CG AF
Sbjct: 263 LVTCGSAF 270
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 494 LTIMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF 546
+ I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 15 IVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 74
Query: 547 -------LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVI 599
+DTPGH F R RV PQ+ A+ VP +
Sbjct: 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 134
Query: 600 AINKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 135 FANKMDKTGADLWLVIRTMQE 155
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGIT---------QGIGAYKVQVPVDGKL 541
I+ H+D GKTT + I R K+ G +GI +
Sbjct: 15 IIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH R RV PQT A GVP ++ +
Sbjct: 75 HRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFV 134
Query: 602 NKIDKDGANPERVMQEL 618
NK+DK GAN E + L
Sbjct: 135 NKMDKLGANFEYSVSTL 151
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 494 LTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551
+ I+G + GK+TLL+++ TKV+ + +AG + K +P + ++ +FLDTPG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK-NIPNEAQI---IFLDTPG 67
Query: 552 ------HEAFGAMRARGARVTXXXXXXXXXXXXX----RPQTNEAIAH-AKAAGVPIVIA 600
+ G A+ + RP+ E + K P+++
Sbjct: 68 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 601 INKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653
INKIDK G + V+ + I + +P ISALKG +D+L++TI+
Sbjct: 128 INKIDKIGPA-KNVLPLIDEIHKKHPELTEIVP---ISALKGANLDELVKTIL 176
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 494 LTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551
+ I+G + GK+TLL+++ TKV+ + +AG + K +P + ++ +FLDTPG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK-NIPNEAQI---IFLDTPG 68
Query: 552 ------HEAFGAMRARGARVTXXXXXXXXXXXXX----RPQTNEAIAH-AKAAGVPIVIA 600
+ G A+ + RP+ E + K P+++
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 601 INKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653
INKIDK G + V+ + I + +P ISALKG +D+L++TI+
Sbjct: 129 INKIDKIGPA-KNVLPLIDEIHKKHPELTEIVP---ISALKGANLDELVKTIL 177
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+DTPGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 494 LTIMGHVDHGKTTLLDHI--RKTKVAAAEAG--------------GIT---QGIGAY--- 531
++++ HVDHGK+TL D + R ++AA+AG GIT I Y
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 532 ------KVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNE 585
+++ DG +D+PGH F + RVT QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 586 AIAHAKAAGVPIVIAINKIDK 606
+ A + V+ INK+D+
Sbjct: 142 VLRQALGERIKPVVVINKVDR 162
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 494 LTIMGHVDHGKTTLLDHI--RKTKVAAAEAG--------------GIT---QGIGAY--- 531
++++ HVDHGK+TL D + R ++AA+AG GIT I Y
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 532 ------KVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNE 585
+++ DG +D+PGH F + RVT QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 586 AIAHAKAAGVPIVIAINKIDK 606
+ A + V+ INK+D+
Sbjct: 142 VLRQALGERIKPVVVINKVDR 162
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+A G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+D PGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+D PGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 496 IMGHVDHGKTTLLDHI-----RKTKVAAAEAGGITQGIGAYKVQ--VPVDGKLQPCVF-- 546
I H+D GKTT + I R K+ G T + + + + + C +
Sbjct: 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD 76
Query: 547 -----LDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAI 601
+D PGH F R RV PQ+ A+ VP +
Sbjct: 77 HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136
Query: 602 NKIDKDGANPE---RVMQE 617
NK+DK GA+ R MQE
Sbjct: 137 NKMDKTGADLWLVIRTMQE 155
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 496 IMGHVDHGKTTL---LDHIRKTKVAAAEAGGITQGIGAYKVQV---PVDGK--------- 540
++GHVDHGKT+L L + + + GI+ +G ++ P G
Sbjct: 13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPN 72
Query: 541 -------LQPCVFLDTPGHEAFGAMRARGARVTX-XXXXXXXXXXXXRPQTNEAIAHAKA 592
L+ F+D+PGHE A GA + +PQT E + +
Sbjct: 73 CLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI 132
Query: 593 AGV-PIVIAINKIDK-DGANPERVMQELSSI--GLMPEDWGGDIPMVQISALKGEKVDDL 648
G+ I+I NKID D E +++ G + E + P++ ISA +D L
Sbjct: 133 LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE----NAPIIPISAHHEANIDVL 188
Query: 649 LETIMLVAELQELKANPHRNAKGT 672
L+ I Q+ P R+ T
Sbjct: 189 LKAI------QDFIPTPKRDPDAT 206
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYK-------------------- 532
I+ H D GKTT+ + + A AG + +G G+ +
Sbjct: 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTV-KGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 533 -VQVPVDGKLQPCV--FLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Q P C+ LDTPGHE F R +T + +
Sbjct: 74 VMQFP----YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEV 129
Query: 590 AKAAGVPIVIAINKIDKDGANPERVMQELSS---IGLMPEDW 628
+ PI+ +NK+D+D +P ++ E+ + IG P W
Sbjct: 130 TRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITW 171
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYK-------------------- 532
I+ H D GKTT+ + + A AG + +G G+ +
Sbjct: 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTV-KGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 533 -VQVPVDGKLQPCV--FLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Q P C+ LDTPGHE F R +T + +
Sbjct: 74 VMQFP----YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEV 129
Query: 590 AKAAGVPIVIAINKIDKDGANPERVMQELSS---IGLMPEDW 628
+ PI+ +NK+D+D +P ++ E+ + IG P W
Sbjct: 130 TRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITW 171
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555
I H+D GKTT + I G I +K D ++ +DTPGH F
Sbjct: 12 IAAHIDAGKTTTTERI------LYYTGRIAVTTCFWK-----DHRIN---IIDTPGHVDF 57
Query: 556 GAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE--- 612
R RV PQ+ A+ VP + NK+DK GA+
Sbjct: 58 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVI 117
Query: 613 RVMQE 617
R MQE
Sbjct: 118 RTMQE 122
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 45/198 (22%)
Query: 494 LTIMGHVDHGKTTLLDH-------IRKTKVAAAEAGGITQGIGAYKVQVPVDG------- 539
L ++GHVDHGK+TL+ H I + K+ E ++G ++K +D
Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68
Query: 540 -----------KLQPCVF--LDTPGHEAF------GAMRARGA-RVTXXXXXXXXXXXXX 579
+ + VF +D PGH F GA +A A V
Sbjct: 69 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 128
Query: 580 RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPERVMQELSSIGLMPEDWGG------DI 632
QT E + A+ G+ I++A+NK+D N ++ E + ++ + G I
Sbjct: 129 EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEF-VVSVLKKFMKGLGYQVDKI 187
Query: 633 PMVQISALKGEKVDDLLE 650
P + +SA KG D+L+E
Sbjct: 188 PFIPVSAWKG---DNLIE 202
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 45/198 (22%)
Query: 494 LTIMGHVDHGKTTLLDH-------IRKTKVAAAEAGGITQGIGAYKVQVPVDG------- 539
L ++GHVDHGK+TL+ H I + K+ E ++G ++K +D
Sbjct: 12 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 71
Query: 540 -----------KLQPCVF--LDTPGHEAF------GAMRARGA-RVTXXXXXXXXXXXXX 579
+ + VF +D PGH F GA +A A V
Sbjct: 72 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 131
Query: 580 RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPERVMQELSSIGLMPEDWGG------DI 632
QT E + A+ G+ I++A+NK+D N ++ E + ++ + G I
Sbjct: 132 EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEF-VVSVLKKFMKGLGYQVDKI 190
Query: 633 PMVQISALKGEKVDDLLE 650
P + +SA KG D+L+E
Sbjct: 191 PFIPVSAWKG---DNLIE 205
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Y+ QV +DG+ LDT GHE + AMR + R ++ E I H
Sbjct: 57 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT---GEGFLCVFAINNTKSFEDIHH 113
Query: 590 AK--------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641
+ + VP+V+ NK D P R + + L +G IP ++ SA
Sbjct: 114 YREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDL-ARSYG--IPFIETSAKT 166
Query: 642 GEKVDDLLETIMLVAELQELK 662
+ VDD T LV E+++ K
Sbjct: 167 RQGVDDAFYT--LVREIRKHK 185
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT GHE + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Y+ QV +DG+ LDT G E + AMR + R ++ E I H
Sbjct: 40 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---GEGFLCVFAINNTKSFEDIHH 96
Query: 590 AK--------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641
+ + VP+V+ NK D P R + + L +G IP ++ SA
Sbjct: 97 YREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDL-ARSYG--IPFIETSAKT 149
Query: 642 GEKVDDLLETIMLVAELQELK 662
+ VDD T LV E+++ K
Sbjct: 150 RQGVDDAFYT--LVREIRKHK 168
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 545 VFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV-PIVIAINK 603
+ DTPGHE + A GA + QT A G+ IV+AINK
Sbjct: 107 IIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK 166
Query: 604 IDKDGANPERVMQELSS--------IGLMPEDWGGDIPMVQISALKGEKV 645
D +G + ERV + + + I P V SALKG+ V
Sbjct: 167 XDLNGFD-ERVFESIKADYLKFAEGIAFKPTTXA----FVPXSALKGDNV 211
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 84/229 (36%), Gaps = 29/229 (12%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL I K AE GG +GI V
Sbjct: 20 IGHVDHGKTTLTAAITKI---LAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 76
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ D PGH + G PQT E + A+ GV +V+
Sbjct: 77 RHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVY 136
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD----LLETIML 654
+NK D +D E V E+ + G + P++ SAL + D L L
Sbjct: 137 VNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKL 196
Query: 655 VAELQELKANPHRNAKGTV---IEAGLH-KSKGPVATFILQNGTLKKGD 699
+ + P R+ + +E+ +G V T L+ G LKKGD
Sbjct: 197 LDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGD 245
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 20/162 (12%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL + T VAAAE + +GI V +
Sbjct: 17 IGHVDHGKTTLTAAL--TYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEYETAK 74
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGVP-IVIA 600
+ +D GH + GA QT E I A+ GV IV+
Sbjct: 75 RHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVF 134
Query: 601 INKID--KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640
+NK+D D + V E+ + E G ++ +++ SAL
Sbjct: 135 MNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSAL 176
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 31/181 (17%)
Query: 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGIT------------------QGIGAYK-- 532
I+ H D GKTTL + + A AG + +GI
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 533 VQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKA 592
+Q P ++ LDTPGH+ F R QT + + +
Sbjct: 93 MQFPYRDRV--VNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM 150
Query: 593 AGVPIVIAINKIDKDGANPERVMQELS---SIGLMPEDWGGDIPMVQISALKGEKVDDLL 649
P++ +NK+D++ +P VM ++ I P W P+ S+ KG DLL
Sbjct: 151 RATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTW----PIGMGSSFKGTY--DLL 204
Query: 650 E 650
Sbjct: 205 H 205
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 81/203 (39%), Gaps = 57/203 (28%)
Query: 494 LTIMGHVDHGKTTLLDH------------IRKTKVAAAEAG------------------- 522
+ ++GHVD GK+T H I K + AAE G
Sbjct: 10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 69
Query: 523 GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAMRARGARVTXXXXXXXXXX 576
GIT I +K + P K Q V +D PGH F G +A A +
Sbjct: 70 GITIDIALWKFETP---KYQVTV-IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEA 125
Query: 577 XXXRP-QTNEAIAHAKAAGV-PIVIAINKIDK---DGANPERVMQELSS----IGLMPED 627
+ QT E A GV +++A+NK+D D + + +++E S+ +G P+
Sbjct: 126 GISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK- 184
Query: 628 WGGDIPMVQISALKGEKVDDLLE 650
+P V IS G D+++E
Sbjct: 185 ---TVPFVPISGWNG---DNMIE 201
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGI---------------TQGIGAYKVQVPVDGKL 541
+GHVDHGKTTL I K AE GG +GI V
Sbjct: 9 IGHVDHGKTTLTAAITKI---LAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 542 QPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKAAGV-PIVIA 600
+ D PGH + G PQT E + A+ GV +V+
Sbjct: 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVY 125
Query: 601 INKID 605
+NK D
Sbjct: 126 VNKAD 130
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D G E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG++ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 33.9 bits (76), Expect = 0.53, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQELK 662
V+D T LV E+++ K
Sbjct: 151 GVEDAFYT--LVREIRQHK 167
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQELK 662
V+D T LV E+++ K
Sbjct: 151 GVEDAFYT--LVREIRQHK 167
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQELK 662
V+D T LV E+++ K
Sbjct: 151 GVEDAFYT--LVREIRQHK 167
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQELK 662
V+D T LV E+++ K
Sbjct: 151 GVEDAFYT--LVREIRQHK 167
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E ++
Sbjct: 151 GVEDAFYT--LVREFRQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 44 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 103
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 104 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 155
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 156 GVEDAFYT--LVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 44 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 103
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 104 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 155
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 156 GVEDAFYT--LVREIRQ 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Y+ QV +DG+ LDT G E + AMR + R ++ E I H
Sbjct: 40 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---GEGFLCVFAINNTKSFEDIHH 96
Query: 590 AK--------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641
+ + VP+V+ NK D P R + + L +G IP ++ SA
Sbjct: 97 YREQIKRVKDSEDVPMVLVGNKCDL----PSRTVDTKQAQDL-ARSYG--IPFIETSAKT 149
Query: 642 GEKVDDLLETIMLVAELQELK 662
+ VDD T LV E+++ K
Sbjct: 150 RQGVDDAFYT--LVREIRKHK 168
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTX----XXXXXXXXXXXXRPQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTX----XXXXXXXXXXXXRPQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 45 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 104
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 105 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 156
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 157 GVEDAFYT--LVREIRQ 171
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Y+ QV +DG+ LDT G E + AMR + R ++ E I H
Sbjct: 40 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---GEGFLCVFAINNTKSFEDIHH 96
Query: 590 AK--------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641
+ + VP+V+ NK D P R + + L +G IP ++ SA
Sbjct: 97 YREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDL-ARSYG--IPFIETSAKT 149
Query: 642 GEKVDDLLETIMLVAELQELK 662
+ VDD T LV E+++ K
Sbjct: 150 RQGVDDAFYT--LVREIRKHK 168
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAH 589
+Y+ QV +DG+ LDT G E + AMR + R ++ E I H
Sbjct: 40 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT---GEGFLCVFAINNTKSFEDIHH 96
Query: 590 AK--------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641
+ + VP+V+ NK D P R + + L +G IP ++ SA
Sbjct: 97 YREQIKRVKDSEDVPMVLVGNKSDL----PSRTVDTKQAQDL-ARSYG--IPFIETSAKT 149
Query: 642 GEKVDDLLETIMLVAELQELK 662
+ VDD T LV E+++ K
Sbjct: 150 RQGVDDAFYT--LVREIRKHK 168
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 601 INKIDKDGANPERVMQELSSIGLM----PEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656
+++ +KD PE V ++L + GL+ PE+WGG ++ E++ ++ +
Sbjct: 39 VDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAV 98
Query: 657 ELQELKANP 665
+ L ++P
Sbjct: 99 SVHSLSSHP 107
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 46 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 105
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 106 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 157
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 158 GVEDAFYT--LVREIRQ 172
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ N+ D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 531 YKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR-----VTXXXXXXXXXXXXXRPQTNE 585
Y+ ++ VD LDT G E F +MR + + +P ++
Sbjct: 40 YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99
Query: 586 AIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645
I + VP+++ NK+D + + + + E+WG P ++ SA V
Sbjct: 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA----LAEEWG--CPFMETSAKSKTMV 153
Query: 646 DDLLETIM 653
D+L I+
Sbjct: 154 DELFAEIV 161
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E + AMR + R Q E
Sbjct: 44 SYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 103
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 104 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 155
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 156 GVEDAFYT--LVREIRQ 170
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQELK 662
V+D T LV E+++ K
Sbjct: 151 GVEDAFYT--LVREIRQHK 167
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 527 GIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEA 586
GI V D + +D PGH + GA PQT E
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 587 IAHAKAAGVP-IVIAINKID-----KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640
I + GVP I++ +NK D + E ++EL S P G D P+V+ SAL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSAL 117
Query: 641 K 641
K
Sbjct: 118 K 118
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 527 GIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEA 586
GI V D + +D PGH + GA PQT E
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 587 IAHAKAAGVP-IVIAINKID-----KDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640
I + GVP I++ +NK D + E ++EL S P G D P+V+ SAL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSAL 117
Query: 641 K 641
K
Sbjct: 118 K 118
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXR----PQTNE 585
+Y+ QV +DG+ LDT G E AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 530 AYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTX----XXXXXXXXXXXXRPQTNE 585
+Y+ QV +DG+ LDT E + AMR + R Q E
Sbjct: 39 SYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYRE 98
Query: 586 AIAHAK-AAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643
I K + VP+V+ NK D E R Q+L+ +G IP ++ SA +
Sbjct: 99 QIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA------RSYG--IPYIETSAKTRQ 150
Query: 644 KVDDLLETIMLVAELQE 660
V+D T LV E+++
Sbjct: 151 GVEDAFYT--LVREIRQ 165
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 51/149 (34%), Gaps = 22/149 (14%)
Query: 493 VLTIMGHVDHGKTTLLDHIR------------KTKVAAAEAGG------ITQGIGAYK-- 532
I+ H D GKTTL + + K++ AA A +GI
Sbjct: 15 TFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSV 74
Query: 533 VQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTXXXXXXXXXXXXXRPQTNEAIAHAKA 592
Q P L LDTPGH F R P+T + +
Sbjct: 75 XQFPYKDYL--INLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRL 132
Query: 593 AGVPIVIAINKIDKDGANPERVMQELSSI 621
PI INK D+D ++ E+ SI
Sbjct: 133 RHTPIXTFINKXDRDTRPSIELLDEIESI 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,490,263
Number of Sequences: 62578
Number of extensions: 881092
Number of successful extensions: 2213
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 179
length of query: 996
length of database: 14,973,337
effective HSP length: 108
effective length of query: 888
effective length of database: 8,214,913
effective search space: 7294842744
effective search space used: 7294842744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)