Query 001915
Match_columns 996
No_of_seqs 677 out of 3825
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 12:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145 Mitochondrial translat 100.0 2E-114 3E-119 973.9 53.1 568 409-983 65-678 (683)
2 PRK05306 infB translation init 100.0 3E-108 6E-113 987.7 72.9 545 409-977 220-787 (787)
3 COG0532 InfB Translation initi 100.0 3E-107 6E-112 925.0 51.8 484 488-979 2-508 (509)
4 TIGR00487 IF-2 translation ini 100.0 1E-105 2E-110 945.0 64.6 555 409-978 9-586 (587)
5 CHL00189 infB translation init 100.0 2E-105 3E-110 957.0 66.3 558 409-978 163-742 (742)
6 PRK04004 translation initiatio 100.0 2.5E-82 5.5E-87 747.6 52.9 460 487-983 2-566 (586)
7 TIGR00491 aIF-2 translation in 100.0 3.7E-80 7.9E-85 728.0 50.5 454 489-981 2-562 (590)
8 PRK14845 translation initiatio 100.0 3.5E-74 7.5E-79 704.8 51.5 448 495-982 469-1021(1049)
9 KOG1144 Translation initiation 100.0 1.4E-57 3E-62 522.9 34.3 464 489-982 473-1042(1064)
10 PRK05433 GTP-binding protein L 99.9 1.3E-25 2.9E-30 267.1 30.2 446 490-990 6-519 (600)
11 TIGR01393 lepA GTP-binding pro 99.9 1.7E-25 3.7E-30 266.0 29.2 447 491-991 3-517 (595)
12 COG0481 LepA Membrane GTPase L 99.9 6.4E-26 1.4E-30 254.9 21.2 333 490-864 8-379 (603)
13 TIGR01394 TypA_BipA GTP-bindin 99.9 1.3E-24 2.8E-29 258.3 30.0 329 492-864 2-387 (594)
14 TIGR00475 selB selenocysteine- 99.9 1.9E-25 4.1E-30 265.2 22.7 228 492-725 1-241 (581)
15 KOG0462 Elongation factor-type 99.9 1.2E-25 2.5E-30 256.1 16.1 209 489-705 58-281 (650)
16 PRK12736 elongation factor Tu; 99.9 2.5E-24 5.4E-29 244.8 23.8 208 488-705 9-247 (394)
17 PRK10512 selenocysteinyl-tRNA- 99.9 1.2E-24 2.6E-29 259.5 22.2 214 492-713 1-221 (614)
18 PRK10218 GTP-binding protein; 99.9 5.9E-24 1.3E-28 252.8 26.4 233 489-727 3-278 (607)
19 PRK12317 elongation factor 1-a 99.9 1.1E-24 2.3E-29 249.5 18.8 215 489-713 4-272 (425)
20 COG5256 TEF1 Translation elong 99.9 5.1E-24 1.1E-28 238.3 20.2 225 489-724 5-295 (428)
21 TIGR00485 EF-Tu translation el 99.9 1.6E-23 3.4E-28 238.1 24.4 229 488-724 9-276 (394)
22 PLN03127 Elongation factor Tu; 99.9 1.2E-23 2.6E-28 242.9 23.8 210 488-704 58-297 (447)
23 CHL00071 tufA elongation facto 99.9 1.7E-23 3.6E-28 239.2 24.4 207 488-704 9-256 (409)
24 PTZ00141 elongation factor 1- 99.9 4.5E-24 9.8E-29 246.4 19.5 207 489-706 5-271 (446)
25 PRK12735 elongation factor Tu; 99.9 8.1E-24 1.8E-28 240.8 21.1 207 489-705 10-249 (396)
26 PF11987 IF-2: Translation-ini 99.9 1.5E-25 3.3E-30 212.9 5.7 96 775-870 13-108 (108)
27 PTZ00327 eukaryotic translatio 99.9 7.6E-24 1.6E-28 245.0 20.8 213 490-706 33-288 (460)
28 PLN00043 elongation factor 1-a 99.9 8.3E-24 1.8E-28 244.3 19.5 207 489-706 5-271 (447)
29 COG1217 TypA Predicted membran 99.9 1.8E-23 3.8E-28 234.8 20.7 228 490-725 4-276 (603)
30 TIGR00483 EF-1_alpha translati 99.9 1.2E-23 2.5E-28 241.2 19.2 208 488-706 4-265 (426)
31 PRK00049 elongation factor Tu; 99.9 4.3E-23 9.2E-28 235.0 23.3 207 489-705 10-249 (396)
32 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.8E-23 8.3E-28 202.9 19.1 164 492-656 1-165 (168)
33 PLN03126 Elongation factor Tu; 99.9 3.5E-23 7.6E-28 240.6 21.9 208 488-705 78-326 (478)
34 PF00009 GTP_EFTU: Elongation 99.9 4.8E-24 1E-28 217.6 11.1 164 490-655 2-185 (188)
35 TIGR03680 eif2g_arch translati 99.9 6.9E-23 1.5E-27 233.9 21.3 213 490-706 3-251 (406)
36 PRK00741 prfC peptide chain re 99.9 2E-21 4.4E-26 228.4 27.5 301 489-814 8-428 (526)
37 PRK04000 translation initiatio 99.9 4.7E-22 1E-26 227.6 21.2 213 490-706 8-256 (411)
38 TIGR00484 EF-G translation elo 99.9 3.7E-21 8E-26 232.9 28.7 296 490-812 9-440 (689)
39 TIGR02034 CysN sulfate adenyly 99.9 4.1E-22 8.9E-27 227.7 19.2 205 492-705 1-254 (406)
40 PRK12739 elongation factor G; 99.9 4.4E-21 9.5E-26 232.3 28.6 296 490-812 7-439 (691)
41 COG1160 Predicted GTPases [Gen 99.9 3.9E-22 8.5E-27 226.1 17.0 223 489-719 176-432 (444)
42 TIGR00503 prfC peptide chain r 99.9 2E-20 4.3E-25 220.2 29.1 301 489-814 9-429 (527)
43 COG3276 SelB Selenocysteine-sp 99.9 1.8E-21 3.9E-26 219.3 18.8 202 493-706 2-209 (447)
44 PRK00007 elongation factor G; 99.9 1.4E-20 3.1E-25 228.0 27.6 296 490-812 9-442 (693)
45 COG0050 TufB GTPases - transla 99.9 1.5E-21 3.2E-26 209.9 16.7 302 490-810 11-361 (394)
46 PRK05124 cysN sulfate adenylyl 99.9 3.1E-21 6.7E-26 224.5 19.7 213 489-706 25-283 (474)
47 PRK13351 elongation factor G; 99.9 1E-20 2.3E-25 228.9 24.9 296 490-812 7-438 (687)
48 cd04171 SelB SelB subfamily. 99.9 4.6E-21 1E-25 186.7 17.2 156 493-653 2-162 (164)
49 cd01890 LepA LepA subfamily. 99.9 8.1E-21 1.8E-25 189.3 18.7 157 492-654 1-174 (179)
50 TIGR03594 GTPase_EngA ribosome 99.9 4.6E-21 1E-25 218.6 18.1 222 489-718 170-424 (429)
51 PRK03003 GTP-binding protein D 99.9 5.7E-21 1.2E-25 222.0 19.2 222 489-719 209-461 (472)
52 COG2895 CysN GTPases - Sulfate 99.9 4.3E-21 9.2E-26 210.6 14.7 230 490-726 5-289 (431)
53 PRK07560 elongation factor EF- 99.9 4.2E-20 9.2E-25 225.0 24.9 302 489-812 18-424 (731)
54 PRK05506 bifunctional sulfate 99.9 1.1E-20 2.4E-25 226.7 18.9 222 490-725 23-306 (632)
55 PRK12740 elongation factor G; 99.8 9.4E-20 2E-24 219.9 26.4 289 497-812 1-421 (668)
56 PRK00093 GTP-binding protein D 99.8 1.8E-20 4E-25 214.5 18.2 223 489-719 171-425 (435)
57 cd01889 SelB_euk SelB subfamil 99.8 1.8E-20 3.8E-25 191.5 15.9 165 492-656 1-185 (192)
58 KOG0460 Mitochondrial translat 99.8 2.2E-20 4.7E-25 204.0 17.1 206 490-703 53-289 (449)
59 cd04124 RabL2 RabL2 subfamily. 99.8 5.5E-20 1.2E-24 182.2 17.8 154 492-656 1-157 (161)
60 COG0480 FusA Translation elong 99.8 1.4E-19 3.1E-24 217.4 23.8 299 488-812 7-440 (697)
61 cd01891 TypA_BipA TypA (tyrosi 99.8 3.6E-20 7.8E-25 189.6 15.1 163 491-659 2-184 (194)
62 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.5E-20 1.8E-24 189.6 17.1 147 492-646 3-172 (195)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.4E-19 3E-24 177.0 17.0 152 492-655 3-162 (164)
64 cd04119 RJL RJL (RabJ-Like) su 99.8 1.6E-19 3.5E-24 176.1 17.2 152 492-654 1-164 (168)
65 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.3E-19 2.8E-24 175.8 16.5 151 492-654 2-159 (162)
66 KOG0458 Elongation factor 1 al 99.8 7.6E-20 1.6E-24 210.9 17.1 232 490-725 176-470 (603)
67 cd04136 Rap_like Rap-like subf 99.8 1.3E-19 2.7E-24 177.2 15.9 152 492-654 2-160 (163)
68 PRK09518 bifunctional cytidyla 99.8 1.2E-19 2.7E-24 220.4 19.1 221 490-719 449-700 (712)
69 smart00173 RAS Ras subfamily o 99.8 1.8E-19 3.9E-24 176.9 16.6 153 492-655 1-160 (164)
70 COG0486 ThdF Predicted GTPase 99.8 3.3E-20 7.2E-25 211.1 13.0 224 411-656 143-375 (454)
71 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3.4E-19 7.4E-24 183.3 19.1 155 492-656 1-167 (201)
72 cd04106 Rab23_lke Rab23-like s 99.8 3.7E-19 8.1E-24 174.0 17.8 152 492-654 1-160 (162)
73 cd04175 Rap1 Rap1 subgroup. T 99.8 2.5E-19 5.5E-24 176.5 16.5 152 492-654 2-160 (164)
74 cd03692 mtIF2_IVc mtIF2_IVc: t 99.8 7.2E-20 1.6E-24 166.5 11.5 83 886-968 1-84 (84)
75 cd04122 Rab14 Rab14 subfamily. 99.8 3.1E-19 6.7E-24 176.8 17.0 152 492-654 3-161 (166)
76 cd04154 Arl2 Arl2 subfamily. 99.8 2.3E-19 4.9E-24 179.5 16.1 155 488-653 11-171 (173)
77 cd01864 Rab19 Rab19 subfamily. 99.8 3.6E-19 7.9E-24 175.9 17.3 154 491-654 3-163 (165)
78 cd01867 Rab8_Rab10_Rab13_like 99.8 3.5E-19 7.6E-24 176.9 17.2 154 491-655 3-163 (167)
79 PTZ00369 Ras-like protein; Pro 99.8 2.9E-19 6.4E-24 182.2 16.6 155 490-656 4-166 (189)
80 cd04120 Rab12 Rab12 subfamily. 99.8 4E-19 8.6E-24 185.4 17.7 154 493-655 2-161 (202)
81 cd00877 Ran Ran (Ras-related n 99.8 4E-19 8.6E-24 177.7 16.9 154 492-655 1-157 (166)
82 TIGR00490 aEF-2 translation el 99.8 9.8E-19 2.1E-23 212.8 23.6 303 489-812 17-424 (720)
83 cd01865 Rab3 Rab3 subfamily. 99.8 5.2E-19 1.1E-23 175.3 17.4 153 492-655 2-161 (165)
84 cd04113 Rab4 Rab4 subfamily. 99.8 4.9E-19 1.1E-23 173.6 16.8 152 492-654 1-159 (161)
85 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.1E-19 6.8E-24 175.7 14.8 155 493-653 1-165 (167)
86 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 5.7E-19 1.2E-23 178.0 17.0 152 491-654 2-161 (172)
87 cd01861 Rab6 Rab6 subfamily. 99.8 9.2E-19 2E-23 171.1 17.8 153 492-654 1-159 (161)
88 cd00881 GTP_translation_factor 99.8 8.4E-19 1.8E-23 174.7 17.8 159 493-655 1-185 (189)
89 cd04140 ARHI_like ARHI subfami 99.8 8.5E-19 1.8E-23 173.8 17.6 153 492-655 2-163 (165)
90 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 8.9E-19 1.9E-23 178.0 17.9 161 490-656 2-169 (183)
91 cd01862 Rab7 Rab7 subfamily. 99.8 1.3E-18 2.8E-23 171.5 18.4 155 492-656 1-166 (172)
92 cd01866 Rab2 Rab2 subfamily. 99.8 1.1E-18 2.4E-23 173.7 18.1 153 492-655 5-164 (168)
93 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.2E-18 2.5E-23 172.1 18.1 153 492-655 3-162 (166)
94 cd01875 RhoG RhoG subfamily. 99.8 9.3E-19 2E-23 179.4 17.9 162 490-656 2-176 (191)
95 cd04116 Rab9 Rab9 subfamily. 99.8 9.6E-19 2.1E-23 173.4 17.2 154 491-654 5-168 (170)
96 COG1160 Predicted GTPases [Gen 99.8 1.5E-18 3.2E-23 197.2 20.7 151 492-656 4-164 (444)
97 cd01888 eIF2_gamma eIF2-gamma 99.8 6.9E-19 1.5E-23 182.6 16.6 161 492-654 1-196 (203)
98 cd01874 Cdc42 Cdc42 subfamily. 99.8 8.9E-19 1.9E-23 177.2 17.0 159 492-655 2-173 (175)
99 cd04144 Ras2 Ras2 subfamily. 99.8 1.4E-18 3E-23 177.4 18.4 152 493-656 1-162 (190)
100 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.6E-19 5.7E-24 186.4 13.3 146 493-648 1-185 (208)
101 smart00174 RHO Rho (Ras homolo 99.8 8.1E-19 1.8E-23 174.2 16.2 151 494-655 1-170 (174)
102 cd04133 Rop_like Rop subfamily 99.8 8.3E-19 1.8E-23 179.0 16.6 154 492-655 2-171 (176)
103 cd04176 Rap2 Rap2 subgroup. T 99.8 6.8E-19 1.5E-23 173.0 15.3 152 492-654 2-160 (163)
104 cd04132 Rho4_like Rho4-like su 99.8 1.7E-18 3.8E-23 174.7 18.6 156 492-658 1-168 (187)
105 cd04157 Arl6 Arl6 subfamily. 99.8 4.9E-19 1.1E-23 172.8 14.2 153 493-654 1-161 (162)
106 smart00175 RAB Rab subfamily o 99.8 1.9E-18 4.1E-23 168.7 18.2 153 492-655 1-160 (164)
107 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.2E-18 2.6E-23 178.6 17.4 155 490-655 4-178 (182)
108 cd04127 Rab27A Rab27a subfamil 99.8 1.5E-18 3.2E-23 173.5 17.7 154 491-655 4-175 (180)
109 cd01894 EngA1 EngA1 subfamily. 99.8 1.2E-18 2.5E-23 168.3 16.3 146 495-654 1-155 (157)
110 KOG0461 Selenocysteine-specifi 99.8 1.5E-18 3.2E-23 189.6 18.9 206 492-704 8-238 (522)
111 KOG0084 GTPase Rab1/YPT1, smal 99.8 7.1E-19 1.5E-23 180.9 15.2 156 489-655 7-170 (205)
112 cd01897 NOG NOG1 is a nucleola 99.8 1.6E-18 3.5E-23 170.8 17.1 150 492-654 1-165 (168)
113 cd04149 Arf6 Arf6 subfamily. 99.8 9.6E-19 2.1E-23 175.7 15.7 154 489-653 7-166 (168)
114 cd04151 Arl1 Arl1 subfamily. 99.8 8.3E-19 1.8E-23 172.4 14.9 150 493-653 1-156 (158)
115 cd01868 Rab11_like Rab11-like. 99.8 1.9E-18 4.1E-23 170.1 17.5 152 492-654 4-162 (165)
116 cd01883 EF1_alpha Eukaryotic e 99.8 3.9E-19 8.5E-24 186.6 13.1 147 493-647 1-195 (219)
117 cd04121 Rab40 Rab40 subfamily. 99.8 2.6E-18 5.5E-23 177.4 18.7 156 490-656 5-166 (189)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 8.9E-19 1.9E-23 171.3 14.6 153 493-654 1-159 (160)
119 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.4E-18 3E-23 174.8 16.4 154 493-656 2-164 (170)
120 cd04134 Rho3 Rho3 subfamily. 99.8 1.2E-18 2.5E-23 178.0 16.0 162 492-656 1-173 (189)
121 cd04112 Rab26 Rab26 subfamily. 99.8 2.1E-18 4.5E-23 176.2 17.9 157 492-657 1-163 (191)
122 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.1E-18 6.7E-23 168.2 18.3 154 492-655 1-162 (164)
123 cd00879 Sar1 Sar1 subfamily. 99.8 1.3E-18 2.7E-23 176.1 15.9 161 487-654 15-188 (190)
124 cd04135 Tc10 TC10 subfamily. 99.8 1.2E-18 2.7E-23 172.9 15.4 153 492-655 1-172 (174)
125 cd04131 Rnd Rnd subfamily. Th 99.8 1.9E-18 4.2E-23 176.0 17.1 153 492-655 2-174 (178)
126 KOG0394 Ras-related GTPase [Ge 99.8 6.1E-19 1.3E-23 179.6 13.2 159 490-658 8-179 (210)
127 cd01871 Rac1_like Rac1-like su 99.8 2.1E-18 4.6E-23 174.3 17.2 158 492-654 2-172 (174)
128 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.7E-18 3.6E-23 172.0 16.2 151 492-653 1-157 (159)
129 PLN03071 GTP-binding nuclear p 99.8 1.6E-18 3.6E-23 182.1 17.0 156 489-655 11-170 (219)
130 cd01860 Rab5_related Rab5-rela 99.8 2.6E-18 5.6E-23 168.2 16.8 153 492-655 2-161 (163)
131 cd04110 Rab35 Rab35 subfamily. 99.8 3.1E-18 6.8E-23 176.4 17.9 155 491-656 6-166 (199)
132 cd04139 RalA_RalB RalA/RalB su 99.8 3.2E-18 6.9E-23 166.8 16.6 152 492-655 1-160 (164)
133 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.4E-18 3E-23 184.2 15.1 162 493-654 1-220 (224)
134 PRK05291 trmE tRNA modificatio 99.8 3.9E-19 8.5E-24 205.8 11.9 219 411-655 141-368 (449)
135 cd04114 Rab30 Rab30 subfamily. 99.8 4.6E-18 1E-22 167.7 17.0 154 491-654 7-166 (169)
136 cd04117 Rab15 Rab15 subfamily. 99.8 4.4E-18 9.5E-23 168.9 16.9 153 492-654 1-159 (161)
137 cd01863 Rab18 Rab18 subfamily. 99.8 4E-18 8.6E-23 166.9 16.3 152 492-654 1-159 (161)
138 cd04118 Rab24 Rab24 subfamily. 99.8 6.1E-18 1.3E-22 171.8 18.2 156 492-656 1-165 (193)
139 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.2E-18 4.8E-23 168.5 14.2 151 493-654 1-157 (158)
140 cd04123 Rab21 Rab21 subfamily. 99.8 5.7E-18 1.2E-22 164.3 16.9 152 492-654 1-159 (162)
141 PRK04213 GTP-binding protein; 99.8 6.2E-18 1.4E-22 173.0 18.0 154 490-655 8-190 (201)
142 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.5E-18 3.2E-23 177.3 13.3 156 492-655 1-164 (182)
143 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 5.4E-18 1.2E-22 180.9 18.1 154 491-656 13-187 (232)
144 cd04115 Rab33B_Rab33A Rab33B/R 99.8 7.2E-18 1.6E-22 168.2 17.9 155 490-654 1-166 (170)
145 smart00177 ARF ARF-like small 99.8 5.1E-18 1.1E-22 171.3 17.0 156 489-655 11-172 (175)
146 cd04109 Rab28 Rab28 subfamily. 99.8 8.4E-18 1.8E-22 175.4 19.1 154 492-655 1-164 (215)
147 cd04158 ARD1 ARD1 subfamily. 99.8 3.5E-18 7.6E-23 170.8 15.6 152 493-654 1-158 (169)
148 KOG0092 GTPase Rab5/YPT51 and 99.8 1.8E-18 4E-23 177.3 13.7 157 489-656 3-166 (200)
149 COG5257 GCD11 Translation init 99.8 2.6E-18 5.6E-23 187.0 15.6 212 490-705 9-256 (415)
150 cd04125 RabA_like RabA-like su 99.8 6.5E-18 1.4E-22 171.4 17.7 154 492-656 1-161 (188)
151 cd01895 EngA2 EngA2 subfamily. 99.8 1.1E-17 2.3E-22 163.2 18.3 157 490-654 1-172 (174)
152 smart00176 RAN Ran (Ras-relate 99.8 4.3E-18 9.4E-23 177.4 16.5 149 497-656 1-153 (200)
153 cd01870 RhoA_like RhoA-like su 99.8 4.8E-18 1.1E-22 168.8 16.1 160 492-656 2-174 (175)
154 KOG0078 GTP-binding protein SE 99.8 3.6E-18 7.7E-23 177.5 15.4 155 489-654 10-171 (207)
155 cd01879 FeoB Ferrous iron tran 99.8 3.5E-18 7.7E-23 165.8 14.5 147 496-656 1-156 (158)
156 cd04130 Wrch_1 Wrch-1 subfamil 99.8 5.5E-18 1.2E-22 169.5 16.1 152 492-654 1-171 (173)
157 PLN00223 ADP-ribosylation fact 99.8 5.8E-18 1.2E-22 172.6 16.5 156 489-655 15-176 (181)
158 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 4.9E-18 1.1E-22 170.8 15.6 153 490-653 14-172 (174)
159 cd04177 RSR1 RSR1 subgroup. R 99.8 6.7E-18 1.4E-22 167.9 16.4 153 492-655 2-162 (168)
160 cd00154 Rab Rab family. Rab G 99.8 1.2E-17 2.5E-22 159.9 17.4 151 492-653 1-158 (159)
161 cd04168 TetM_like Tet(M)-like 99.8 4.5E-18 9.8E-23 181.7 16.2 159 493-655 1-233 (237)
162 PLN03118 Rab family protein; P 99.8 1.1E-17 2.5E-22 173.6 18.7 155 490-656 13-176 (211)
163 cd04143 Rhes_like Rhes_like su 99.8 7.8E-18 1.7E-22 180.9 18.0 155 492-657 1-171 (247)
164 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 6.1E-18 1.3E-22 173.8 16.2 156 489-655 20-183 (221)
165 cd00157 Rho Rho (Ras homology) 99.8 6.2E-18 1.3E-22 166.5 15.3 152 492-654 1-170 (171)
166 cd04111 Rab39 Rab39 subfamily. 99.8 9.7E-18 2.1E-22 175.2 17.6 154 492-655 3-164 (211)
167 COG4108 PrfC Peptide chain rel 99.8 1.1E-17 2.4E-22 187.9 19.0 215 489-703 10-332 (528)
168 PRK15494 era GTPase Era; Provi 99.8 8.1E-18 1.8E-22 188.4 18.0 156 489-655 50-214 (339)
169 cd04147 Ras_dva Ras-dva subfam 99.8 6.7E-18 1.4E-22 173.6 15.8 157 493-657 1-163 (198)
170 cd01893 Miro1 Miro1 subfamily. 99.8 1E-17 2.2E-22 166.5 16.5 156 493-655 2-162 (166)
171 cd01898 Obg Obg subfamily. Th 99.8 1E-17 2.3E-22 165.1 16.4 152 493-654 2-168 (170)
172 smart00178 SAR Sar1p-like memb 99.8 9.1E-18 2E-22 171.0 16.3 159 489-654 15-182 (184)
173 PLN00116 translation elongatio 99.8 6.2E-17 1.3E-21 200.1 26.8 120 488-607 16-163 (843)
174 cd04137 RheB Rheb (Ras Homolog 99.8 1.6E-17 3.4E-22 166.5 17.5 158 492-660 2-166 (180)
175 cd04159 Arl10_like Arl10-like 99.8 9.6E-18 2.1E-22 160.8 15.2 151 494-654 2-158 (159)
176 TIGR00436 era GTP-binding prot 99.8 1.2E-17 2.6E-22 180.8 17.9 152 493-655 2-162 (270)
177 cd04146 RERG_RasL11_like RERG/ 99.8 8.2E-18 1.8E-22 166.2 15.0 151 493-655 1-162 (165)
178 PLN03110 Rab GTPase; Provision 99.8 1.4E-17 3.1E-22 174.4 17.6 156 490-655 11-172 (216)
179 cd04142 RRP22 RRP22 subfamily. 99.8 1.1E-17 2.3E-22 173.6 16.2 156 492-656 1-173 (198)
180 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-17 2.9E-22 166.8 16.3 153 493-653 1-165 (167)
181 PF02421 FeoB_N: Ferrous iron 99.8 3.4E-18 7.5E-23 172.5 11.4 147 492-652 1-156 (156)
182 PRK03003 GTP-binding protein D 99.8 1.9E-17 4.1E-22 192.8 19.2 152 490-655 37-197 (472)
183 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-17 2.7E-22 165.6 15.1 154 490-654 13-172 (173)
184 cd01885 EF2 EF2 (for archaea a 99.8 5.2E-18 1.1E-22 179.9 12.7 116 492-607 1-138 (222)
185 PTZ00133 ADP-ribosylation fact 99.8 2.5E-17 5.3E-22 167.9 17.1 155 489-654 15-175 (182)
186 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 2.4E-17 5.2E-22 174.7 17.7 159 492-655 2-174 (222)
187 cd01892 Miro2 Miro2 subfamily. 99.7 1.8E-17 4E-22 166.3 15.9 157 489-655 2-164 (169)
188 cd04126 Rab20 Rab20 subfamily. 99.7 1.8E-17 3.9E-22 175.5 16.5 158 492-656 1-189 (220)
189 cd04169 RF3 RF3 subfamily. Pe 99.7 2.7E-17 6E-22 178.7 18.4 127 492-618 3-147 (267)
190 KOG0098 GTPase Rab2, small G p 99.7 9.4E-18 2E-22 171.3 13.6 153 491-654 6-165 (216)
191 cd00876 Ras Ras family. The R 99.7 2.1E-17 4.6E-22 160.0 15.5 150 493-654 1-158 (160)
192 TIGR00450 mnmE_trmE_thdF tRNA 99.7 8.7E-18 1.9E-22 194.3 14.9 217 411-655 133-358 (442)
193 TIGR03598 GTPase_YsxC ribosome 99.7 2.3E-17 5E-22 166.9 15.8 148 489-646 16-179 (179)
194 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.6E-17 3.4E-22 166.1 14.4 151 494-653 2-162 (164)
195 COG1159 Era GTPase [General fu 99.7 2.1E-17 4.4E-22 179.8 16.2 155 489-654 4-169 (298)
196 TIGR00231 small_GTP small GTP- 99.7 4.2E-17 9.1E-22 154.4 16.3 151 492-653 2-160 (161)
197 PLN03108 Rab family protein; P 99.7 5.1E-17 1.1E-21 169.4 18.1 155 491-656 6-167 (210)
198 PF00071 Ras: Ras family; Int 99.7 4.7E-17 1E-21 159.5 16.6 153 493-656 1-160 (162)
199 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.2E-17 1.1E-21 156.5 16.5 145 492-655 2-155 (157)
200 cd01878 HflX HflX subfamily. 99.7 3.5E-17 7.6E-22 168.2 15.6 150 490-654 40-202 (204)
201 TIGR03594 GTPase_EngA ribosome 99.7 4.1E-17 8.9E-22 186.4 17.5 149 493-655 1-158 (429)
202 PTZ00416 elongation factor 2; 99.7 3.4E-16 7.4E-21 193.3 26.4 119 489-607 17-157 (836)
203 cd01873 RhoBTB RhoBTB subfamil 99.7 5.4E-17 1.2E-21 168.3 16.4 153 492-655 3-194 (195)
204 PRK00093 GTP-binding protein D 99.7 5.9E-17 1.3E-21 185.7 18.2 149 492-654 2-159 (435)
205 TIGR02528 EutP ethanolamine ut 99.7 3.2E-17 6.9E-22 158.2 13.4 133 493-653 2-141 (142)
206 cd04167 Snu114p Snu114p subfam 99.7 2.8E-17 6.1E-22 171.5 13.9 115 493-607 2-136 (213)
207 cd01886 EF-G Elongation factor 99.7 5.1E-17 1.1E-21 176.9 15.7 140 493-641 1-159 (270)
208 cd04148 RGK RGK subfamily. Th 99.7 1.8E-16 3.9E-21 167.0 18.0 155 492-657 1-163 (221)
209 PRK00089 era GTPase Era; Revie 99.7 1.3E-16 2.9E-21 173.7 17.5 159 489-656 3-170 (292)
210 TIGR03156 GTP_HflX GTP-binding 99.7 1.1E-16 2.4E-21 180.3 17.0 149 490-654 188-349 (351)
211 cd04163 Era Era subfamily. Er 99.7 2.8E-16 6.1E-21 151.3 17.3 156 490-654 2-166 (168)
212 PRK00454 engB GTP-binding prot 99.7 2.4E-16 5.3E-21 159.7 16.9 155 489-655 22-192 (196)
213 COG5258 GTPBP1 GTPase [General 99.7 7.8E-17 1.7E-21 178.5 14.2 215 490-706 116-386 (527)
214 PRK09518 bifunctional cytidyla 99.7 4.2E-16 9E-21 189.8 21.6 152 490-655 274-434 (712)
215 PRK15467 ethanolamine utilizat 99.7 1.4E-16 3E-21 159.5 14.3 140 493-656 3-146 (158)
216 cd00880 Era_like Era (E. coli 99.7 2.6E-16 5.7E-21 148.8 14.6 153 496-655 1-162 (163)
217 cd04129 Rho2 Rho2 subfamily. 99.7 3E-16 6.4E-21 159.9 16.0 154 492-656 2-172 (187)
218 cd04103 Centaurin_gamma Centau 99.7 2.1E-16 4.6E-21 157.8 14.1 147 492-654 1-156 (158)
219 KOG0080 GTPase Rab18, small G 99.7 8.5E-17 1.8E-21 160.8 10.7 153 490-653 10-170 (209)
220 PRK12299 obgE GTPase CgtA; Rev 99.7 8.2E-16 1.8E-20 172.3 19.1 157 491-656 158-327 (335)
221 cd01881 Obg_like The Obg-like 99.7 2.6E-16 5.7E-21 155.3 13.4 150 496-654 1-174 (176)
222 KOG0465 Mitochondrial elongati 99.7 8.6E-16 1.9E-20 177.8 19.1 302 490-812 38-470 (721)
223 PTZ00132 GTP-binding nuclear p 99.7 1.2E-15 2.7E-20 158.6 18.4 155 490-655 8-166 (215)
224 PF00025 Arf: ADP-ribosylation 99.7 1.8E-16 4E-21 160.9 11.8 157 489-655 12-174 (175)
225 cd00882 Ras_like_GTPase Ras-li 99.7 5.8E-16 1.3E-20 144.0 14.1 148 496-653 1-156 (157)
226 KOG0079 GTP-binding protein H- 99.7 3.8E-16 8.1E-21 154.4 13.3 161 492-663 9-175 (198)
227 KOG0093 GTPase Rab3, small G p 99.7 3.8E-16 8.2E-21 154.3 12.1 155 492-657 22-183 (193)
228 KOG0095 GTPase Rab30, small G 99.7 4.8E-16 1E-20 153.8 12.7 152 492-653 8-165 (213)
229 KOG0087 GTPase Rab11/YPT3, sma 99.7 3.1E-16 6.8E-21 163.0 11.6 156 490-655 13-174 (222)
230 PRK11058 GTPase HflX; Provisio 99.7 1.7E-15 3.6E-20 174.7 17.3 150 491-655 197-360 (426)
231 TIGR02729 Obg_CgtA Obg family 99.7 1.8E-15 3.8E-20 169.2 16.8 154 491-655 157-327 (329)
232 cd04170 EF-G_bact Elongation f 99.6 1.1E-15 2.4E-20 165.1 12.7 149 493-651 1-167 (268)
233 KOG0086 GTPase Rab4, small G p 99.6 1.3E-15 2.9E-20 151.2 11.8 154 491-652 9-166 (214)
234 PRK12298 obgE GTPase CgtA; Rev 99.6 4.7E-15 1E-19 169.3 17.9 157 492-656 160-332 (390)
235 PRK12297 obgE GTPase CgtA; Rev 99.6 5.8E-15 1.3E-19 169.9 18.8 152 492-656 159-326 (424)
236 PRK12296 obgE GTPase CgtA; Rev 99.6 3E-15 6.5E-20 174.8 16.4 154 491-657 159-340 (500)
237 cd01876 YihA_EngB The YihA (En 99.6 6.6E-15 1.4E-19 142.4 15.4 152 494-655 2-169 (170)
238 COG0218 Predicted GTPase [Gene 99.6 1.2E-14 2.6E-19 151.2 17.8 156 490-655 23-195 (200)
239 cd04105 SR_beta Signal recogni 99.6 8.4E-15 1.8E-19 152.6 16.3 159 492-653 1-201 (203)
240 PRK09554 feoB ferrous iron tra 99.6 5.4E-15 1.2E-19 180.9 17.0 151 491-655 3-166 (772)
241 COG2229 Predicted GTPase [Gene 99.6 2.7E-14 6E-19 146.2 17.1 159 487-654 6-175 (187)
242 PF10662 PduV-EutP: Ethanolami 99.6 6.6E-15 1.4E-19 146.7 12.1 134 493-653 3-142 (143)
243 KOG0395 Ras-related GTPase [Ge 99.6 1.5E-14 3.2E-19 151.0 15.2 158 490-658 2-166 (196)
244 TIGR00437 feoB ferrous iron tr 99.6 8E-15 1.7E-19 175.3 14.8 145 498-656 1-154 (591)
245 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.9E-14 4.2E-19 150.6 14.9 148 492-643 1-176 (202)
246 KOG1191 Mitochondrial GTPase [ 99.6 1.4E-14 2.9E-19 165.5 14.0 169 483-658 260-451 (531)
247 KOG0088 GTPase Rab21, small G 99.6 2.5E-15 5.5E-20 150.0 6.6 154 490-654 12-172 (218)
248 KOG0091 GTPase Rab39, small G 99.6 8.3E-15 1.8E-19 147.1 10.3 153 490-654 7-170 (213)
249 COG1100 GTPase SAR1 and relate 99.5 1.1E-13 2.5E-18 142.8 16.0 161 492-656 6-184 (219)
250 cd01896 DRG The developmentall 99.5 1.8E-13 3.8E-18 146.0 15.6 146 493-655 2-224 (233)
251 KOG0464 Elongation factor G [T 99.5 4.1E-14 8.8E-19 157.6 9.4 115 492-610 38-170 (753)
252 KOG1423 Ras-like GTPase ERA [C 99.5 2.2E-13 4.8E-18 148.4 14.4 166 488-657 69-271 (379)
253 KOG0075 GTP-binding ADP-ribosy 99.5 8.1E-14 1.8E-18 138.0 10.0 156 492-657 21-182 (186)
254 KOG0073 GTP-binding ADP-ribosy 99.5 4.5E-13 9.8E-18 134.9 14.1 157 488-654 13-175 (185)
255 KOG0097 GTPase Rab14, small G 99.5 1.9E-13 4.1E-18 134.4 11.1 150 491-651 11-167 (215)
256 PTZ00099 rab6; Provisional 99.5 3.1E-13 6.7E-18 138.2 13.0 124 524-656 11-141 (176)
257 KOG0070 GTP-binding ADP-ribosy 99.5 1.5E-13 3.1E-18 140.9 10.3 157 488-655 14-176 (181)
258 KOG0083 GTPase Rab26/Rab37, sm 99.5 8.2E-14 1.8E-18 136.0 6.9 161 496-666 2-169 (192)
259 PLN00023 GTP-binding protein; 99.5 6.5E-13 1.4E-17 148.0 14.9 118 489-608 19-165 (334)
260 KOG0459 Polypeptide release fa 99.5 1.4E-13 3.1E-18 153.8 9.4 212 487-706 75-343 (501)
261 KOG0463 GTP-binding protein GP 99.4 4E-13 8.8E-18 148.6 12.4 213 492-706 134-405 (641)
262 KOG0081 GTPase Rab27, small G 99.4 7.1E-14 1.5E-18 139.8 5.7 151 493-654 11-178 (219)
263 COG1084 Predicted GTPase [Gene 99.4 1.2E-12 2.6E-17 144.2 15.5 160 485-656 162-335 (346)
264 COG0370 FeoB Fe2+ transport sy 99.4 7.6E-13 1.7E-17 156.8 14.6 152 492-657 4-164 (653)
265 KOG0393 Ras-related small GTPa 99.4 2.1E-13 4.6E-18 142.2 8.0 161 490-656 3-178 (198)
266 cd04104 p47_IIGP_like p47 (47- 99.4 1.4E-12 3E-17 135.1 13.4 157 491-654 1-181 (197)
267 PF08477 Miro: Miro-like prote 99.4 5.9E-13 1.3E-17 124.8 8.5 109 493-605 1-119 (119)
268 PF01926 MMR_HSR1: 50S ribosom 99.4 2.3E-12 5E-17 121.5 12.1 106 493-603 1-116 (116)
269 KOG1489 Predicted GTP-binding 99.4 5.8E-12 1.3E-16 138.1 14.0 152 491-653 196-363 (366)
270 KOG0466 Translation initiation 99.3 1.4E-12 3E-17 141.6 7.7 212 490-705 37-295 (466)
271 PRK09866 hypothetical protein; 99.3 1.1E-11 2.4E-16 146.7 15.7 111 542-654 230-350 (741)
272 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.5E-11 5.3E-16 128.9 16.7 172 488-674 36-214 (225)
273 KOG0076 GTP-binding ADP-ribosy 99.3 6E-12 1.3E-16 128.0 9.7 161 489-656 15-186 (197)
274 KOG0467 Translation elongation 99.3 1.1E-11 2.3E-16 147.0 12.8 117 490-606 8-136 (887)
275 KOG0468 U5 snRNP-specific prot 99.3 7.9E-12 1.7E-16 145.8 11.4 120 487-606 124-261 (971)
276 COG2262 HflX GTPases [General 99.3 2.1E-11 4.5E-16 137.9 14.4 153 489-656 190-355 (411)
277 KOG1143 Predicted translation 99.3 8.5E-12 1.8E-16 138.3 10.9 212 492-706 168-440 (591)
278 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 3.5E-11 7.6E-16 124.1 14.4 152 492-657 1-184 (196)
279 KOG0071 GTP-binding ADP-ribosy 99.3 2.8E-11 6.1E-16 119.5 11.4 155 490-655 16-176 (180)
280 cd03702 IF2_mtIF2_II This fami 99.3 1.6E-11 3.6E-16 114.8 8.9 72 669-740 1-94 (95)
281 cd01899 Ygr210 Ygr210 subfamil 99.3 1.1E-10 2.4E-15 130.5 16.8 84 494-577 1-111 (318)
282 cd01850 CDC_Septin CDC/Septin. 99.2 8.9E-11 1.9E-15 128.6 14.3 117 491-608 4-157 (276)
283 COG1163 DRG Predicted GTPase [ 99.2 5.1E-11 1.1E-15 131.3 11.8 149 492-657 64-289 (365)
284 COG0536 Obg Predicted GTPase [ 99.2 1.8E-10 3.8E-15 127.9 14.3 157 493-659 161-335 (369)
285 KOG4252 GTP-binding protein [S 99.2 3.7E-11 8E-16 122.6 6.9 155 489-654 18-178 (246)
286 cd03701 IF2_IF5B_II IF2_IF5B_I 99.2 8.2E-11 1.8E-15 110.0 8.6 72 669-740 1-94 (95)
287 COG3596 Predicted GTPase [Gene 99.2 1.2E-10 2.7E-15 126.2 11.0 165 488-655 36-220 (296)
288 PF09439 SRPRB: Signal recogni 99.2 1.4E-10 3.1E-15 120.1 10.6 115 490-611 2-129 (181)
289 KOG0074 GTP-binding ADP-ribosy 99.2 8.9E-11 1.9E-15 116.1 8.6 156 488-653 14-175 (185)
290 PRK09602 translation-associate 99.1 9.2E-10 2E-14 126.5 16.1 85 492-576 2-113 (396)
291 PF14578 GTP_EFTU_D4: Elongati 99.1 4.4E-10 9.5E-15 102.2 9.4 75 886-968 5-81 (81)
292 COG4917 EutP Ethanolamine util 99.0 5.7E-10 1.2E-14 108.7 8.0 136 493-654 3-143 (148)
293 PRK13768 GTPase; Provisional 99.0 7.4E-10 1.6E-14 119.9 9.9 113 543-655 98-245 (253)
294 KOG0090 Signal recognition par 99.0 1.6E-09 3.5E-14 113.8 11.5 157 490-654 37-236 (238)
295 KOG1532 GTPase XAB1, interacts 99.0 5.2E-10 1.1E-14 120.9 8.1 173 485-657 13-264 (366)
296 KOG0072 GTP-binding ADP-ribosy 99.0 4.9E-10 1.1E-14 111.2 6.5 155 490-655 17-177 (182)
297 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 8.7E-10 1.9E-14 113.8 8.2 152 491-654 10-166 (216)
298 KOG0077 Vesicle coat complex C 98.9 2.6E-09 5.6E-14 108.4 9.3 160 487-653 16-189 (193)
299 PRK09435 membrane ATPase/prote 98.9 7.7E-09 1.7E-13 116.4 14.2 162 488-656 53-259 (332)
300 KOG0469 Elongation factor 2 [T 98.9 1.7E-09 3.7E-14 123.6 8.8 131 489-619 17-179 (842)
301 KOG3883 Ras family small GTPas 98.9 1.3E-08 2.8E-13 102.2 12.7 159 488-653 6-171 (198)
302 TIGR00750 lao LAO/AO transport 98.9 1.8E-08 4E-13 111.6 14.8 161 488-655 31-236 (300)
303 KOG1707 Predicted Ras related/ 98.9 3.8E-09 8.2E-14 123.4 9.2 149 487-652 5-170 (625)
304 KOG2486 Predicted GTPase [Gene 98.9 6.3E-09 1.4E-13 113.0 10.2 159 489-654 134-313 (320)
305 PTZ00258 GTP-binding protein; 98.9 1.5E-08 3.2E-13 116.2 13.4 87 489-576 19-126 (390)
306 TIGR02836 spore_IV_A stage IV 98.9 3.2E-08 7E-13 113.1 15.3 157 488-652 14-232 (492)
307 PF03029 ATP_bind_1: Conserved 98.9 9.9E-10 2.1E-14 118.2 2.9 113 543-655 92-235 (238)
308 PF00350 Dynamin_N: Dynamin fa 98.8 1.6E-08 3.6E-13 100.5 11.1 111 494-604 1-168 (168)
309 KOG1490 GTP-binding protein CR 98.8 9.1E-09 2E-13 118.5 10.2 153 488-652 165-336 (620)
310 TIGR00073 hypB hydrogenase acc 98.8 1.3E-08 2.8E-13 106.5 10.4 150 490-654 21-204 (207)
311 cd01853 Toc34_like Toc34-like 98.8 4.2E-08 9.1E-13 106.4 14.6 118 486-607 26-162 (249)
312 PF05049 IIGP: Interferon-indu 98.8 9.8E-09 2.1E-13 116.9 9.7 156 485-653 29-214 (376)
313 smart00053 DYNc Dynamin, GTPas 98.8 8.2E-08 1.8E-12 103.8 15.8 130 490-620 25-217 (240)
314 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 5.2E-08 1.1E-12 104.8 14.2 151 493-653 1-172 (232)
315 TIGR00101 ureG urease accessor 98.8 4.7E-08 1E-12 102.5 11.6 97 542-654 92-193 (199)
316 PRK09601 GTP-binding protein Y 98.8 9.1E-08 2E-12 108.9 14.4 85 492-576 3-107 (364)
317 KOG1673 Ras GTPases [General f 98.7 1.9E-08 4E-13 101.3 7.1 162 491-661 20-188 (205)
318 cd03703 aeIF5B_II aeIF5B_II: T 98.7 4.4E-08 9.5E-13 94.1 9.1 68 670-738 2-107 (110)
319 KOG4423 GTP-binding protein-li 98.7 2.1E-09 4.6E-14 110.7 -0.1 154 492-655 26-192 (229)
320 PF03308 ArgK: ArgK protein; 98.7 5.8E-08 1.3E-12 105.5 9.6 155 488-657 26-230 (266)
321 KOG0410 Predicted GTP binding 98.7 5.9E-08 1.3E-12 107.3 9.5 145 489-653 176-337 (410)
322 COG1703 ArgK Putative periplas 98.7 2.2E-07 4.8E-12 102.4 13.0 166 486-658 46-255 (323)
323 TIGR00991 3a0901s02IAP34 GTP-b 98.6 7.4E-07 1.6E-11 99.6 14.7 115 489-607 36-166 (313)
324 COG0378 HypB Ni2+-binding GTPa 98.6 1.5E-07 3.4E-12 98.3 8.5 150 489-655 10-199 (202)
325 PRK10463 hydrogenase nickel in 98.6 1.5E-07 3.3E-12 104.1 8.9 153 489-655 102-287 (290)
326 cd01859 MJ1464 MJ1464. This f 98.5 3.7E-07 7.9E-12 90.7 10.3 93 556-656 3-95 (156)
327 COG0012 Predicted GTPase, prob 98.5 1.4E-06 3.1E-11 98.7 14.0 87 491-577 2-109 (372)
328 COG5192 BMS1 GTP-binding prote 98.5 2.1E-06 4.6E-11 99.8 14.5 138 489-641 67-210 (1077)
329 PF04548 AIG1: AIG1 family; I 98.4 2.8E-06 6.1E-11 89.6 14.3 111 493-608 2-130 (212)
330 cd01900 YchF YchF subfamily. 98.4 6.8E-07 1.5E-11 98.5 8.6 84 494-577 1-104 (274)
331 PF00735 Septin: Septin; Inte 98.4 1.7E-06 3.7E-11 95.6 11.7 131 492-623 5-176 (281)
332 cd01855 YqeH YqeH. YqeH is an 98.4 1.6E-06 3.5E-11 89.1 10.5 103 550-655 19-123 (190)
333 TIGR00157 ribosome small subun 98.3 1.4E-06 3E-11 94.3 7.7 93 553-653 24-119 (245)
334 KOG3886 GTP-binding protein [S 98.3 9.9E-07 2.1E-11 94.1 6.0 148 491-641 4-163 (295)
335 cd01856 YlqF YlqF. Proteins o 98.3 7.9E-06 1.7E-10 83.0 11.9 97 549-655 2-99 (171)
336 cd01342 Translation_Factor_II_ 98.2 1E-05 2.2E-10 69.5 10.3 79 888-967 3-82 (83)
337 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.2E-05 2.6E-10 80.4 9.9 88 561-655 4-93 (157)
338 cd01858 NGP_1 NGP-1. Autoanti 98.1 3.7E-06 8.1E-11 84.0 6.2 55 490-551 101-156 (157)
339 cd03693 EF1_alpha_II EF1_alpha 98.1 1.4E-05 3.1E-10 73.9 8.8 78 888-968 7-87 (91)
340 TIGR00993 3a0901s04IAP86 chlor 98.1 4.2E-05 9.2E-10 92.3 14.7 113 490-607 117-249 (763)
341 cd04178 Nucleostemin_like Nucl 98.1 5.4E-06 1.2E-10 85.4 6.4 56 489-551 115-171 (172)
342 cd01849 YlqF_related_GTPase Yl 98.1 9.3E-06 2E-10 81.1 7.9 82 567-655 1-83 (155)
343 KOG1486 GTP-binding protein DR 98.1 1.3E-05 2.8E-10 86.6 9.3 85 489-577 60-151 (364)
344 KOG1954 Endocytosis/signaling 98.1 2.6E-05 5.6E-10 87.9 11.9 117 490-608 57-225 (532)
345 TIGR03596 GTPase_YlqF ribosome 98.1 1.6E-05 3.5E-10 87.3 10.0 99 549-657 4-103 (276)
346 smart00010 small_GTPase Small 98.0 5.3E-06 1.1E-10 77.6 4.4 112 492-646 1-115 (124)
347 COG5019 CDC3 Septin family pro 98.0 4.3E-05 9.4E-10 86.5 12.1 133 489-622 21-195 (373)
348 PRK10416 signal recognition pa 98.0 0.00024 5.2E-09 80.1 17.7 148 489-650 112-303 (318)
349 cd01855 YqeH YqeH. YqeH is an 98.0 1.2E-05 2.6E-10 82.7 6.5 55 490-551 126-189 (190)
350 KOG0448 Mitofusin 1 GTPase, in 98.0 6.3E-05 1.4E-09 90.3 12.9 154 486-641 104-310 (749)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.3E-05 7.1E-10 76.1 7.8 76 560-644 6-84 (141)
352 TIGR03597 GTPase_YqeH ribosome 97.9 5.2E-05 1.1E-09 86.6 10.5 95 552-654 50-150 (360)
353 cd03696 selB_II selB_II: this 97.9 6.6E-05 1.4E-09 68.1 9.0 77 889-968 4-83 (83)
354 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2E-05 4.3E-10 77.7 6.0 53 493-552 85-138 (141)
355 PRK12289 GTPase RsgA; Reviewed 97.9 4E-05 8.7E-10 87.4 9.2 85 561-653 85-171 (352)
356 cd01851 GBP Guanylate-binding 97.9 3.4E-05 7.5E-10 82.5 8.2 86 491-577 7-103 (224)
357 KOG1547 Septin CDC10 and relat 97.9 8.4E-05 1.8E-09 80.1 10.9 132 491-623 46-218 (336)
358 TIGR00064 ftsY signal recognit 97.9 0.00028 6.1E-09 77.8 15.5 95 540-649 153-260 (272)
359 PRK09563 rbgA GTPase YlqF; Rev 97.9 4.4E-05 9.5E-10 84.4 9.2 99 549-657 7-106 (287)
360 KOG2655 Septin family protein 97.9 7.4E-05 1.6E-09 85.0 11.1 132 491-623 21-192 (366)
361 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.5E-05 5.3E-10 86.4 6.9 58 488-552 118-176 (287)
362 cd01856 YlqF YlqF. Proteins o 97.8 3.6E-05 7.8E-10 78.3 7.4 58 488-552 112-170 (171)
363 cd01849 YlqF_related_GTPase Yl 97.8 2.9E-05 6.2E-10 77.6 6.5 56 489-551 98-154 (155)
364 KOG3905 Dynein light intermedi 97.8 0.00014 3.1E-09 81.0 12.3 155 490-654 51-287 (473)
365 KOG1487 GTP-binding protein DR 97.8 4E-05 8.6E-10 83.3 7.7 82 492-577 60-148 (358)
366 TIGR03596 GTPase_YlqF ribosome 97.8 3.9E-05 8.5E-10 84.3 6.6 57 489-552 116-173 (276)
367 PRK00098 GTPase RsgA; Reviewed 97.7 6E-05 1.3E-09 83.9 7.7 83 563-652 78-162 (298)
368 cd01854 YjeQ_engC YjeQ/EngC. 97.7 8.6E-05 1.9E-09 82.2 8.5 84 562-653 75-160 (287)
369 PRK12736 elongation factor Tu; 97.7 0.0021 4.6E-08 74.3 20.1 181 786-967 81-294 (394)
370 PF04760 IF2_N: Translation in 97.7 9.9E-06 2.1E-10 68.2 0.7 51 410-460 2-54 (54)
371 COG1161 Predicted GTPases [Gen 97.7 4.6E-05 1E-09 85.8 5.9 57 488-551 129-186 (322)
372 TIGR00092 GTP-binding protein 97.7 0.00013 2.9E-09 83.5 9.1 86 492-577 3-109 (368)
373 cd03698 eRF3_II_like eRF3_II_l 97.7 0.00037 8.1E-09 63.4 10.1 77 888-967 4-82 (83)
374 TIGR03597 GTPase_YqeH ribosome 97.6 4.1E-05 8.9E-10 87.4 4.7 111 491-608 154-280 (360)
375 PRK14974 cell division protein 97.6 0.00071 1.5E-08 76.9 14.0 96 541-650 222-323 (336)
376 PLN03126 Elongation factor Tu; 97.6 0.0021 4.4E-08 76.4 18.2 187 778-968 145-374 (478)
377 PF03193 DUF258: Protein of un 97.6 0.00013 2.8E-09 74.9 6.6 87 452-555 6-100 (161)
378 PF05783 DLIC: Dynein light in 97.6 0.00059 1.3E-08 80.7 12.7 154 491-654 25-261 (472)
379 PRK12288 GTPase RsgA; Reviewed 97.6 0.00029 6.3E-09 80.3 9.8 85 563-653 118-204 (347)
380 PLN00043 elongation factor 1-a 97.5 0.0028 6.2E-08 74.6 18.0 180 785-968 90-316 (447)
381 PRK01889 GTPase RsgA; Reviewed 97.5 0.00036 7.7E-09 79.8 10.1 82 563-652 110-192 (356)
382 PRK12735 elongation factor Tu; 97.5 0.004 8.6E-08 72.1 18.6 182 786-968 81-297 (396)
383 TIGR01425 SRP54_euk signal rec 97.5 0.00051 1.1E-08 80.3 11.3 115 490-606 99-251 (429)
384 KOG1491 Predicted GTP-binding 97.5 0.00022 4.8E-09 80.2 7.8 87 491-577 20-126 (391)
385 PF03144 GTP_EFTU_D2: Elongati 97.5 0.00031 6.6E-09 61.8 7.2 68 899-966 1-73 (74)
386 PRK14722 flhF flagellar biosyn 97.5 0.0012 2.5E-08 76.2 13.7 148 487-647 133-322 (374)
387 PRK12727 flagellar biosynthesi 97.5 0.0031 6.7E-08 75.5 17.5 143 488-645 347-523 (559)
388 cd01859 MJ1464 MJ1464. This f 97.5 0.00021 4.6E-09 71.1 6.4 56 489-551 99-155 (156)
389 PLN03127 Elongation factor Tu; 97.5 0.0056 1.2E-07 72.2 19.1 181 786-968 130-348 (447)
390 TIGR00485 EF-Tu translation el 97.5 0.0047 1E-07 71.4 18.1 179 786-967 81-294 (394)
391 cd04089 eRF3_II eRF3_II: domai 97.4 0.00095 2.1E-08 60.7 9.2 75 889-967 5-81 (82)
392 COG1162 Predicted GTPases [Gen 97.4 0.00035 7.6E-09 78.0 7.6 58 492-556 165-230 (301)
393 PRK13796 GTPase YqeH; Provisio 97.4 0.00026 5.6E-09 81.1 6.6 55 491-552 160-220 (365)
394 TIGR00483 EF-1_alpha translati 97.4 0.0043 9.3E-08 72.3 16.7 181 784-967 89-309 (426)
395 cd03694 GTPBP_II Domain II of 97.4 0.0011 2.3E-08 61.1 9.1 77 889-966 4-85 (87)
396 CHL00071 tufA elongation facto 97.4 0.009 1.9E-07 69.5 18.8 180 786-968 81-305 (409)
397 cd00066 G-alpha G protein alph 97.3 0.00088 1.9E-08 75.4 10.2 67 540-606 159-240 (317)
398 smart00275 G_alpha G protein a 97.3 0.0019 4.2E-08 73.5 12.6 67 540-606 182-263 (342)
399 cd03112 CobW_like The function 97.3 0.001 2.2E-08 67.4 9.3 23 492-514 1-23 (158)
400 KOG0052 Translation elongation 97.3 9.4E-05 2E-09 84.4 1.9 115 490-608 6-156 (391)
401 PRK12317 elongation factor 1-a 97.3 0.0086 1.9E-07 69.8 17.9 180 785-967 89-307 (425)
402 PRK00049 elongation factor Tu; 97.3 0.011 2.5E-07 68.4 18.7 182 786-968 81-297 (396)
403 cd03695 CysN_NodQ_II CysN_NodQ 97.3 0.0021 4.6E-08 58.5 10.1 75 889-966 4-79 (81)
404 PRK12288 GTPase RsgA; Reviewed 97.3 0.00029 6.3E-09 80.4 5.4 57 493-556 207-271 (347)
405 PRK12289 GTPase RsgA; Reviewed 97.3 0.00027 5.9E-09 80.7 5.0 56 493-555 174-237 (352)
406 PRK00771 signal recognition pa 97.2 0.0048 1E-07 72.6 15.1 146 489-649 93-275 (437)
407 PRK13796 GTPase YqeH; Provisio 97.2 0.0015 3.3E-08 74.9 10.6 92 554-654 58-156 (365)
408 PRK10512 selenocysteinyl-tRNA- 97.2 0.0075 1.6E-07 73.8 17.0 176 785-967 56-257 (614)
409 cd03114 ArgK-like The function 97.1 0.0015 3.2E-08 65.8 8.2 58 541-605 91-148 (148)
410 PTZ00141 elongation factor 1- 97.1 0.012 2.7E-07 69.3 16.7 181 785-968 90-316 (446)
411 KOG1707 Predicted Ras related/ 97.1 0.004 8.6E-08 74.3 12.2 156 489-657 423-583 (625)
412 TIGR00157 ribosome small subun 97.1 0.00055 1.2E-08 74.3 4.8 55 492-554 121-183 (245)
413 cd03697 EFTU_II EFTU_II: Elong 97.1 0.0021 4.6E-08 59.1 7.8 77 889-966 4-83 (87)
414 PRK06995 flhF flagellar biosyn 97.0 0.0089 1.9E-07 71.1 14.6 146 489-648 254-434 (484)
415 cd03115 SRP The signal recogni 97.0 0.0048 1E-07 62.5 10.8 65 541-608 82-153 (173)
416 PRK04000 translation initiatio 97.0 0.024 5.2E-07 66.2 17.6 183 785-967 90-315 (411)
417 PTZ00327 eukaryotic translatio 97.0 0.029 6.3E-07 66.6 18.1 183 785-967 122-348 (460)
418 PRK10867 signal recognition pa 96.9 0.013 2.9E-07 68.9 14.7 94 541-649 183-283 (433)
419 KOG0447 Dynamin-like GTP bindi 96.9 0.011 2.4E-07 69.8 13.3 134 487-624 304-512 (980)
420 PF00448 SRP54: SRP54-type pro 96.8 0.0025 5.4E-08 67.2 7.0 94 541-648 83-182 (196)
421 TIGR00959 ffh signal recogniti 96.8 0.021 4.5E-07 67.2 15.0 63 541-606 182-251 (428)
422 PRK13695 putative NTPase; Prov 96.7 0.016 3.5E-07 59.1 12.1 73 564-654 95-170 (174)
423 KOG1424 Predicted GTP-binding 96.7 0.00092 2E-08 78.6 3.3 54 492-552 315-369 (562)
424 PRK14723 flhF flagellar biosyn 96.7 0.028 6E-07 70.2 15.8 146 490-649 184-367 (767)
425 TIGR03348 VI_IcmF type VI secr 96.7 0.0039 8.4E-08 81.3 8.9 108 491-607 111-256 (1169)
426 PRK00098 GTPase RsgA; Reviewed 96.7 0.002 4.4E-08 71.8 5.5 57 491-554 164-228 (298)
427 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0031 6.7E-08 70.0 6.7 57 492-555 162-226 (287)
428 COG1618 Predicted nucleotide k 96.7 0.049 1.1E-06 56.5 14.5 141 490-655 4-174 (179)
429 PRK05703 flhF flagellar biosyn 96.6 0.048 1E-06 64.2 16.4 145 490-648 220-400 (424)
430 PRK11889 flhF flagellar biosyn 96.6 0.024 5.3E-07 66.1 13.3 145 489-647 239-418 (436)
431 TIGR00475 selB selenocysteine- 96.6 0.082 1.8E-06 64.5 18.3 178 784-966 54-257 (581)
432 TIGR02034 CysN sulfate adenyly 96.5 0.099 2.2E-06 61.0 18.1 181 785-968 85-298 (406)
433 TIGR03680 eif2g_arch translati 96.5 0.078 1.7E-06 61.8 17.1 182 785-966 85-309 (406)
434 PRK11537 putative GTP-binding 96.5 0.03 6.5E-07 63.4 13.0 138 490-638 3-186 (318)
435 KOG0705 GTPase-activating prot 96.4 0.0032 6.9E-08 74.4 5.0 146 492-655 31-187 (749)
436 cd03110 Fer4_NifH_child This p 96.4 0.017 3.8E-07 58.7 9.5 81 540-622 91-171 (179)
437 TIGR01393 lepA GTP-binding pro 96.3 0.11 2.3E-06 63.8 17.3 178 785-967 75-274 (595)
438 KOG2485 Conserved ATP/GTP bind 96.3 0.0059 1.3E-07 68.5 5.9 59 489-551 141-205 (335)
439 PRK05124 cysN sulfate adenylyl 96.3 0.14 3E-06 61.1 17.7 180 785-968 112-326 (474)
440 cd04178 Nucleostemin_like Nucl 96.3 0.0087 1.9E-07 61.9 6.7 51 567-619 1-53 (172)
441 KOG3859 Septins (P-loop GTPase 96.3 0.0078 1.7E-07 66.5 6.4 132 491-623 42-210 (406)
442 PRK05506 bifunctional sulfate 96.2 0.16 3.5E-06 62.4 18.5 179 785-967 109-321 (632)
443 cd02036 MinD Bacterial cell di 96.2 0.051 1.1E-06 54.5 11.6 64 543-608 64-128 (179)
444 PRK14721 flhF flagellar biosyn 96.2 0.03 6.6E-07 65.7 11.3 146 488-648 188-369 (420)
445 PRK05433 GTP-binding protein L 96.0 0.18 3.9E-06 61.9 17.2 177 786-967 80-278 (600)
446 PF02492 cobW: CobW/HypB/UreG, 96.0 0.0082 1.8E-07 61.8 4.9 126 492-620 1-169 (178)
447 PRK12724 flagellar biosynthesi 95.9 0.072 1.6E-06 62.6 12.7 144 490-647 222-400 (432)
448 COG3640 CooC CO dehydrogenase 95.9 0.02 4.3E-07 62.4 7.5 62 542-606 134-197 (255)
449 cd04092 mtEFG2_II_like mtEFG2_ 95.8 0.068 1.5E-06 48.4 9.5 74 892-967 4-82 (83)
450 cd04088 EFG_mtEFG_II EFG_mtEFG 95.8 0.069 1.5E-06 48.2 9.5 74 892-967 4-82 (83)
451 KOG3887 Predicted small GTPase 95.8 0.037 7.9E-07 60.4 8.9 148 492-652 28-197 (347)
452 PRK12726 flagellar biosynthesi 95.8 0.04 8.8E-07 64.0 9.8 143 489-647 204-383 (407)
453 PRK12723 flagellar biosynthesi 95.8 0.099 2.1E-06 60.9 13.0 147 489-649 172-356 (388)
454 KOG2484 GTPase [General functi 95.8 0.0077 1.7E-07 69.3 3.8 59 487-552 248-307 (435)
455 TIGR01394 TypA_BipA GTP-bindin 95.6 0.36 7.9E-06 59.2 17.6 77 887-966 202-284 (594)
456 PF09547 Spore_IV_A: Stage IV 95.6 0.15 3.3E-06 59.8 13.5 156 489-652 15-232 (492)
457 COG0523 Putative GTPases (G3E 95.5 0.066 1.4E-06 60.9 10.0 147 492-649 2-193 (323)
458 COG3276 SelB Selenocysteine-sp 95.4 0.31 6.7E-06 57.3 15.2 110 855-967 140-253 (447)
459 TIGR02475 CobW cobalamin biosy 95.4 0.12 2.6E-06 59.1 11.8 25 490-514 3-27 (341)
460 KOG0082 G-protein alpha subuni 95.4 0.093 2E-06 60.3 10.8 114 540-656 193-343 (354)
461 COG1162 Predicted GTPases [Gen 95.4 0.07 1.5E-06 60.1 9.4 84 564-653 78-163 (301)
462 PRK06731 flhF flagellar biosyn 95.3 0.24 5.1E-06 55.2 13.4 145 489-647 73-252 (270)
463 KOG2423 Nucleolar GTPase [Gene 95.3 0.0095 2.1E-07 68.4 2.2 57 489-552 305-362 (572)
464 cd02042 ParA ParA and ParB of 95.2 0.087 1.9E-06 48.9 8.1 71 494-577 2-73 (104)
465 COG0552 FtsY Signal recognitio 95.1 0.11 2.3E-06 59.3 10.1 25 488-512 136-160 (340)
466 PF00503 G-alpha: G-protein al 95.1 0.052 1.1E-06 62.7 7.8 67 540-606 234-315 (389)
467 cd02038 FleN-like FleN is a me 95.1 0.13 2.8E-06 50.9 9.6 102 495-606 4-109 (139)
468 COG3523 IcmF Type VI protein s 95.1 0.034 7.4E-07 72.0 6.7 106 492-607 126-269 (1188)
469 cd01983 Fer4_NifH The Fer4_Nif 94.9 0.1 2.2E-06 46.2 7.2 75 494-584 2-77 (99)
470 TIGR00487 IF-2 translation ini 94.8 1.1 2.3E-05 55.1 18.0 89 886-981 262-353 (587)
471 cd03111 CpaE_like This protein 94.7 0.11 2.4E-06 49.3 7.4 100 494-603 2-106 (106)
472 COG1419 FlhF Flagellar GTP-bin 94.6 0.16 3.4E-06 59.3 9.8 142 490-647 202-379 (407)
473 COG1161 Predicted GTPases [Gen 94.5 0.22 4.7E-06 56.6 10.7 102 545-655 13-115 (322)
474 KOG0780 Signal recognition par 94.5 0.1 2.3E-06 60.3 7.8 116 488-606 98-252 (483)
475 PRK05306 infB translation init 94.3 1.2 2.6E-05 56.4 17.2 90 887-983 465-557 (787)
476 cd04091 mtEFG1_II_like mtEFG1_ 94.2 0.4 8.6E-06 43.4 9.6 72 892-966 4-79 (81)
477 PF08433 KTI12: Chromatin asso 94.1 0.21 4.6E-06 55.5 9.2 148 492-653 2-170 (270)
478 TIGR03574 selen_PSTK L-seryl-t 94.1 0.32 6.9E-06 52.6 10.4 152 494-655 2-166 (249)
479 PF06858 NOG1: Nucleolar GTP-b 94.1 0.12 2.7E-06 44.9 5.6 42 564-605 12-58 (58)
480 PRK01889 GTPase RsgA; Reviewed 93.8 0.04 8.7E-07 63.3 2.9 26 489-514 193-218 (356)
481 PF13401 AAA_22: AAA domain; P 93.6 0.049 1.1E-06 51.9 2.8 26 490-515 3-28 (131)
482 COG0541 Ffh Signal recognition 93.4 0.23 5E-06 58.3 8.2 115 489-606 98-251 (451)
483 PRK08154 anaerobic benzoate ca 93.4 0.41 8.9E-06 53.9 9.9 27 487-513 129-155 (309)
484 cd03702 IF2_mtIF2_II This fami 93.3 0.41 8.9E-06 45.4 8.2 85 888-979 3-90 (95)
485 KOG0460 Mitochondrial translat 93.3 0.091 2E-06 59.9 4.5 102 859-964 231-335 (449)
486 cd03699 lepA_II lepA_II: This 93.2 0.62 1.3E-05 42.7 9.0 75 892-966 4-84 (86)
487 PF13555 AAA_29: P-loop contai 93.1 0.11 2.3E-06 45.8 3.8 24 490-513 22-45 (62)
488 PRK10218 GTP-binding protein; 92.9 2.5 5.5E-05 52.2 16.4 76 888-966 207-288 (607)
489 cd03691 BipA_TypA_II BipA_TypA 92.8 0.82 1.8E-05 41.6 9.2 68 897-966 13-84 (86)
490 PF05729 NACHT: NACHT domain 92.5 0.35 7.6E-06 47.4 7.0 22 493-514 2-23 (166)
491 PF03266 NTPase_1: NTPase; In 92.4 0.18 3.9E-06 52.1 5.1 21 493-513 1-21 (168)
492 cd02032 Bchl_like This family 92.4 1.2 2.5E-05 48.6 11.5 65 541-606 115-184 (267)
493 PRK05480 uridine/cytidine kina 92.2 0.12 2.7E-06 54.1 3.5 28 487-514 2-29 (209)
494 PRK04004 translation initiatio 92.0 5.1 0.00011 49.4 17.5 85 886-971 233-330 (586)
495 PF13207 AAA_17: AAA domain; P 91.9 0.14 3E-06 48.5 3.2 22 493-514 1-22 (121)
496 cd03700 eEF2_snRNP_like_II EF2 91.8 1.3 2.7E-05 41.3 9.4 68 897-966 14-91 (93)
497 KOG4181 Uncharacterized conser 91.8 0.9 1.9E-05 52.2 9.8 23 492-514 189-211 (491)
498 KOG0446 Vacuolar sorting prote 91.7 0.11 2.4E-06 64.2 2.9 66 542-608 132-213 (657)
499 cd03689 RF3_II RF3_II: this su 91.7 1.1 2.4E-05 41.3 8.8 67 898-966 15-82 (85)
500 PRK14738 gmk guanylate kinase; 91.6 0.58 1.3E-05 49.5 7.9 26 489-514 11-36 (206)
No 1
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-114 Score=973.87 Aligned_cols=568 Identities=50% Similarity=0.725 Sum_probs=505.2
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCccccc---cccCCH----HHHHHHHHhcCCceeecChhhhHHHhhhcccCCh
Q 001915 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEG---VQTLDK----DMVKMICKDYEVEVLDADPVKMEEMARKKDLFDE 481 (996)
Q Consensus 409 ~~~itv~eLa~~l~~~~~eiik~L~~~G~~~~i---nq~Ld~----e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~e 481 (996)
+..|++.+||..|+....++...|+..|...+. ...||. |++++++.+|++..+..+.. .++.........+
T Consensus 65 ~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~ 143 (683)
T KOG1145|consen 65 WNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPE 143 (683)
T ss_pred cccccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCc
Confidence 568999999999999999999999999883221 123443 45566667777655433322 2222122334456
Q ss_pred hhhhcccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHH
Q 001915 482 EDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRAR 561 (996)
Q Consensus 482 e~~~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~r 561 (996)
.+...+.+|||+|+||||+||||||||++|+++.++.++.+||||||++|.+.++ .| ..++|+|||||++|..||.|
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhc
Confidence 7778899999999999999999999999999999999999999999999999987 44 68999999999999999999
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
|+..+|+++|||+++||+++||.|.|.|++.+++|+||++||||++++++++++.+|..+++..++||++++++++||++
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee------------
Q 001915 642 GEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------ 709 (996)
Q Consensus 642 GeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------ 709 (996)
|+|++.|.++++.++++|+++++|.++++|+|+|+..++++|+++|++|+.|||++|+.+++|.+||+
T Consensus 301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i 380 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPI 380 (683)
T ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----------EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccC------
Q 001915 710 ----------IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSG------ 773 (996)
Q Consensus 710 ----------V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~------ 773 (996)
|+||+++|++||.++.+++|+.||++.+.|....+.+++.......+...+...+++...+..+
T Consensus 381 ~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~ 460 (683)
T KOG1145|consen 381 DEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRK 460 (683)
T ss_pred cccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 8999999999999999999999999999998887666654433222223333333332221111
Q ss_pred --CCc----ceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhH
Q 001915 774 --LDL----HQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTY 847 (996)
Q Consensus 774 --~~~----~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~ 847 (996)
++. +.+|+|||+||+||+|||.++|..|++++|+++++|+|||+||++|++||.++.|||+||||+.++..+++
T Consensus 461 ~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~~~~ 540 (683)
T KOG1145|consen 461 TRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSVKQL 540 (683)
T ss_pred eecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHHHHH
Confidence 222 35999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEechHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeecCC--c--eEEEEEEeeceEeeCCcEEEeeCC
Q 001915 848 ADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS--G--RVAGCMVSEGKLVKGCGIRVIRDG 923 (996)
Q Consensus 848 A~~~~V~I~~~~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~--g--~IaGc~V~~G~i~~~~~vrviR~g 923 (996)
|++.||+|+.|||||+||||+++.|.+.|+|..+++++|+|+|+++|.++. + .||||+|++|.+++.+.+|++|||
T Consensus 541 a~~~gVkI~~~nVIY~LieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g 620 (683)
T KOG1145|consen 541 AAAKGVKIRLYNVIYRLIEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNG 620 (683)
T ss_pred HhccCceEeehhHHHHHHHHHHHHHHhhCCCceEEeeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCC
Confidence 999999999999999999999999999999999999999999999998643 3 499999999999999999999999
Q ss_pred EEEEEEEEeeeecccccccccccCceeEEEEccCC-CCCCCCEEEEEEEEEeehhHHHHHH
Q 001915 924 KTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD-DLEEGDIIEAFNSIQRKRTLEEASA 983 (996)
Q Consensus 924 ~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~-d~~~GD~ie~y~~~~~~~~l~~~~~ 983 (996)
+|||+|.|.||||.|+||.+|++|.||||.|++|| +|++||+|+||+ .++.+++++.
T Consensus 621 ~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~~~f~~GD~i~~ye---~k~i~~e~~~ 678 (683)
T KOG1145|consen 621 KVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGNEDFKEGDKIQCYE---KKRILEETSW 678 (683)
T ss_pred cEEEEechhHHhhhhhhhhhhcCCCeeeeEeccCCcCCCcCCEEEEee---hhhhhhhccc
Confidence 99999999999999999999999999999999999 999999999999 5666776554
No 2
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.7e-108 Score=987.73 Aligned_cols=545 Identities=53% Similarity=0.862 Sum_probs=504.1
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhccc
Q 001915 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (996)
Q Consensus 409 ~~~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~ 488 (996)
+++|||.|||.+|+++..+|++.||.+|+|+++|+.||+++++++|+|||+++....... +++...+.
T Consensus 220 ~~~itv~ela~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~------------~~~~~~~~ 287 (787)
T PRK05306 220 PETITVAELAEKMAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLE------------DDDEEDLV 287 (787)
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEccccc------------cccccccc
Confidence 789999999999999999999999999999999999999999999999999875433211 12233467
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.|+|+|+||||+|||||||+++|++..+..++.+|+|++++++.+.+ + ++.++|||||||+.|..|+.+++..+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~--~--~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET--N--GGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE--C--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 89999999999999999999999999888888899999999887654 3 3679999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|||||+++++++|+.+++.++...++|+||++||+|+++++.+++..++..+++..+.|++++++|++||++|.||++|
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 99999999999999999999999999999999999999888888888888888887888888899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee-------------------
Q 001915 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------- 709 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------- 709 (996)
|++|..++++++++.++.+++.+.|+++..++++|++++++|++|+|+.||.|++|..+|+
T Consensus 444 le~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd 523 (787)
T PRK05306 444 LEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPST 523 (787)
T ss_pred HHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCC
Confidence 9999988888788888999999999999999999999999999999999999999988776
Q ss_pred ---EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEec
Q 001915 710 ---IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 786 (996)
Q Consensus 710 ---V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaD 786 (996)
++||+++|.+||.|.++++++.|++++++|.+..+...+... ..+++++++..+..+ +.+++++|||||
T Consensus 524 ~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~---~~~~l~~~~~~~~~~-----~~~~~~~iikad 595 (787)
T PRK05306 524 PVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQ---QRVSLENLFEQMKEG-----EVKELNLIIKAD 595 (787)
T ss_pred eEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhc---cccCHHHhhhhhhcC-----CceEEEEEEEeC
Confidence 678999999999999999999999999999888777655432 356788877665433 246899999999
Q ss_pred ccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001915 787 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 866 (996)
Q Consensus 787 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Lid 866 (996)
++||+|||.++|.+|.+++++++|+|++||+||++||++|.+++|+||||||++++.++++|+++||+|++|+|||+|||
T Consensus 596 ~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d 675 (787)
T PRK05306 596 VQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLID 675 (787)
T ss_pred CcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccc
Q 001915 867 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 945 (996)
Q Consensus 867 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~ 945 (996)
||+++|+++|+|.++|+++|.|+|+++|+. +.|+||||+|++|+|++|+++||+|||++||+|+|.||||||+||+||+
T Consensus 676 ~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~ 755 (787)
T PRK05306 676 DVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVR 755 (787)
T ss_pred HHHHHHhhccCchhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeC
Confidence 999999999999999999999999999996 4599999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEccCCCCCCCCEEEEEEEEEeehh
Q 001915 946 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRT 977 (996)
Q Consensus 946 ~G~ECGI~i~~f~d~~~GD~ie~y~~~~~~~~ 977 (996)
+|+||||+|++|+||++||+||||++++++|+
T Consensus 756 ~g~ecgi~~~~~~d~~~gD~ie~~~~~~~~~~ 787 (787)
T PRK05306 756 AGYECGIGLENYNDIKEGDIIEAYEMVEVKRT 787 (787)
T ss_pred CCCEEEEEeeccccCCCCCEEEEEEEEEecCC
Confidence 99999999999999999999999999999875
No 3
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-107 Score=925.01 Aligned_cols=484 Identities=55% Similarity=0.868 Sum_probs=455.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..|+|.|+||||+||||||||++|+++++..++++||||||++|++.+... ....++|+|||||++|+.||+||+..||
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 469999999999999999999999999999999999999999999987532 3357999999999999999999999999
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
++|||||++||+++||.|.++|++.+++|+||++||||+++++++++..++.++++..+.|++++.++++||++|+||++
T Consensus 81 IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 81 IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee------------------
Q 001915 648 LLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------ 709 (996)
Q Consensus 648 L~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------ 709 (996)
|++.|+.+++.++++++|++++.|+|+|+..++|+|++++++|++|||++||.+++|..||+
T Consensus 161 LL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps 240 (509)
T COG0532 161 LLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPS 240 (509)
T ss_pred HHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEe
Q 001915 710 ----IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKV 785 (996)
Q Consensus 710 ----V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKa 785 (996)
++||+++|.||+.|.++++++.|+++++.|...++..... .....++++++..+... .+.+.+|+|+||
T Consensus 241 ~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~k~~~viiKa 313 (509)
T COG0532 241 KPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELA---SKKKGELEELIAEIKIR----GELKELNVILKA 313 (509)
T ss_pred CCeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhh---hHHHHHHHHHHHhhhcc----CCcceecEEEEE
Confidence 6899999999999999999999999999988653222211 12234566666555411 135789999999
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHH
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLI 865 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Li 865 (996)
|++||+|||..+|+++..++++++|+|++||+||++||++|++++|+||||||++++.++++|++++|+||+|+|||||+
T Consensus 314 Dt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~li 393 (509)
T COG0532 314 DTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLI 393 (509)
T ss_pred cccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccccccccc
Q 001915 866 DDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEV 944 (996)
Q Consensus 866 ddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev 944 (996)
||+++||+++|+|.++|+++|.|+++++|.. +.|.||||+|++|++++|+++|++|||.+||+|+|.||||||+||+||
T Consensus 394 ed~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev 473 (509)
T COG0532 394 EDVEAAMKGMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEV 473 (509)
T ss_pred HHHHHHHHhccchhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHh
Confidence 9999999999999999999999999999995 679999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEEEccCCCCCCCCEEEEEEEEEeehhHH
Q 001915 945 NAGLECGVGAADYDDLEEGDIIEAFNSIQRKRTLE 979 (996)
Q Consensus 945 ~~G~ECGI~i~~f~d~~~GD~ie~y~~~~~~~~l~ 979 (996)
++|+||||.|+||+||++||+||||+.++.+|+|.
T Consensus 474 ~~G~ecgI~i~~~~di~~gD~le~~~~~~~~r~l~ 508 (509)
T COG0532 474 RKGQECGIAIENYRDIKEGDILEVFEPVEVKRTLK 508 (509)
T ss_pred ccCcEEEEEecCcccCCCCCEEEEEEEEeechhhc
Confidence 99999999999999999999999999999999875
No 4
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.1e-105 Score=944.98 Aligned_cols=555 Identities=52% Similarity=0.814 Sum_probs=504.6
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhccc
Q 001915 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (996)
Q Consensus 409 ~~~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~ 488 (996)
++++||.+||.+|+++..++++.||.+|+++++|+.||+++++++|+|||+++............ ...+++...+.
T Consensus 9 ~~~~~v~~la~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (587)
T TIGR00487 9 GGTLTVSELANKMNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEETEAE----EQDEDSGDLLV 84 (587)
T ss_pred CCCeEHHHHHHHHCcCHHHHHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhhhhh----ccccccccccc
Confidence 68999999999999999999999999999999999999999999999999987543222211111 11222234578
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.|+|+|+||||+|||||||+++|++.++...+.+|+|++++++.+.+ .+ ...++|||||||+.|..++.+++..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~--~~-~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN--ED-GKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE--CC-CcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 89999999999999999999999999998888899999998877654 22 2379999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|||||++++.++|+.+++.++...++|+|+++||+|+++.+.+++..++..+++..+.|+++.+++++||++|+||++|
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 99999999999999999999999999999999999999888888888888888877778888889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee-------------------
Q 001915 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------- 709 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------- 709 (996)
+++|..++++.++..+|+.++.+.|+++..++++|++++++|++|+|++||.+++|+.+|+
T Consensus 242 l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 242 LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCC
Confidence 9999988888888888999999999999999999999999999999999999999988776
Q ss_pred ---EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEec
Q 001915 710 ---IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 786 (996)
Q Consensus 710 ---V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaD 786 (996)
+.||+++|.+||.|.++++++.|+++++.|.+..++..+.. ...+++++++..+..+ +.+.+++|||||
T Consensus 322 ~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~viikad 393 (587)
T TIGR00487 322 PVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR---SVKVTLDNLFEQIKEG-----ELKELNIILKAD 393 (587)
T ss_pred EEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh---ccccchhHhhhhhhcc-----CCceEEEEEEeC
Confidence 67999999999999999999999999999988776654432 2346677776655433 357899999999
Q ss_pred ccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001915 787 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 866 (996)
Q Consensus 787 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Lid 866 (996)
++||+|||.++|.+|++++++++|++++||+||++||++|.+++|+||||||+++++++++|+++||+|++|+|||||+|
T Consensus 394 ~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d 473 (587)
T TIGR00487 394 VQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLID 473 (587)
T ss_pred CcchHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccc
Q 001915 867 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 945 (996)
Q Consensus 867 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~ 945 (996)
+++++|+++|+|.++|+++|+|+|+++|+. +.|+||||+|++|+|++|+++||+|||++||+|+|.||||+|+||+||+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~ 553 (587)
T TIGR00487 474 EIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVS 553 (587)
T ss_pred HHHHHHHhccCcceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEEC
Confidence 999999999999999999999999999996 4599999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEccCCCCCCCCEEEEEEEEEeehhH
Q 001915 946 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRTL 978 (996)
Q Consensus 946 ~G~ECGI~i~~f~d~~~GD~ie~y~~~~~~~~l 978 (996)
+|+||||.|++|+||++||+||||++++++|+|
T Consensus 554 ~g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 586 (587)
T TIGR00487 554 NGYECGIGIKNYNDIKEGDIIEAFEVQEVKRTL 586 (587)
T ss_pred CCCEEEEEEeccccCCCCCEEEEEEEEEecccc
Confidence 999999999999999999999999999999987
No 5
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.5e-105 Score=957.04 Aligned_cols=558 Identities=44% Similarity=0.714 Sum_probs=504.9
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhccc
Q 001915 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (996)
Q Consensus 409 ~~~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~ 488 (996)
++++||.+||.+|+++..+|++.||.+|+|+++|+.||.++++++|.+||+++........+++... ...++++...+.
T Consensus 163 ~~~~tv~~la~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 241 (742)
T CHL00189 163 HSPLTIQELSTLLCIPETEIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSN-LDNTSAFTENSI 241 (742)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhc-ccccccchhhhc
Confidence 6899999999999999999999999999999999999999999999999999764333222222111 111111234578
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.|+|+|+||||+|||||||+++|+...+...+.+|+|+++++|.+.+.+++..+.++|||||||+.|..++.+++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 89999999999999999999999999888888899999999988877665566889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|||||+++++++|+.+++.++...++|+|||+||+|++..+.+++..++..+++..+.|++.++++++||++|.||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999999999999877777888888777777777877899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee-------------------
Q 001915 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------- 709 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------- 709 (996)
+++|..++++.++++.|..++.+.|+++..++++|++++++|++|+|+.||.+++|+.+|+
T Consensus 402 le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgd 481 (742)
T CHL00189 402 LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSS 481 (742)
T ss_pred HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcCccEEcCCC
Confidence 9999998888888888888999999999999999999999999999999999999998876
Q ss_pred ---EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEec
Q 001915 710 ---IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 786 (996)
Q Consensus 710 ---V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaD 786 (996)
+.||++.|.+||.|+++++++.|+++++.|.+..+... ...+++++++.....+ ..+++++|||||
T Consensus 482 iV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~iiKad 550 (742)
T CHL00189 482 VVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDT------TKRITLSTTKTINKKD-----NKKQINLIIKTD 550 (742)
T ss_pred ceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhh------hcccchHHHHHHhhhc-----CCceeeEEEEeC
Confidence 56788889999999999999999999988765543221 1245666665554433 357899999999
Q ss_pred ccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001915 787 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 866 (996)
Q Consensus 787 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Lid 866 (996)
++||+|||.++|.+|++++|+++|++++||+||++||++|.+++|+||||||+++++++++|+++||+|++|+|||+|||
T Consensus 551 ~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid 630 (742)
T CHL00189 551 TQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLE 630 (742)
T ss_pred CcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccceeeeeEEeEEEEEEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccccccccccc
Q 001915 867 DMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNA 946 (996)
Q Consensus 867 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~ 946 (996)
+++++|+++|+|.++|+++|+|+|++||+.++|.||||+|++|+|++|+++||+|+|++||+|+|.||||+|+||+||++
T Consensus 631 ~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~ 710 (742)
T CHL00189 631 YIEALMEDLLDPEYKKVPIGEAEVKTVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQE 710 (742)
T ss_pred HHHHHHhhccCceeeeeeceeEEeeEEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCC
Confidence 99999999999999999999999999999877999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEccCCCCCCCCEEEEEEEEEeehhH
Q 001915 947 GLECGVGAADYDDLEEGDIIEAFNSIQRKRTL 978 (996)
Q Consensus 947 G~ECGI~i~~f~d~~~GD~ie~y~~~~~~~~l 978 (996)
|+||||+|++|+||++||+||||++++++|+|
T Consensus 711 g~ecgi~i~~~~d~~~gD~ie~y~~~~~~~~l 742 (742)
T CHL00189 711 GNECGIFIEEFQLWQSGDKIHAFELIPKKKSL 742 (742)
T ss_pred CCEEEEEeeCCCCCCcCCEEEEEEEEEecCCC
Confidence 99999999999999999999999999999986
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.5e-82 Score=747.59 Aligned_cols=460 Identities=37% Similarity=0.552 Sum_probs=394.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC----Ccc----------ccEEEEeCCCc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----GKL----------QPCVFLDTPGH 552 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id----gk~----------~~ItfIDTPGh 552 (996)
+..|+|+|+||||+|||||||+++|++..+...+.+++|++++++.+..... +.. ..++|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 4579999999999999999999999998888888999999999877654321 110 12799999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC-CCCh--------------h-----
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANP--------------E----- 612 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~-~a~~--------------e----- 612 (996)
+.|..++.+++..+|++|||||+++++++|+.+++.++...++|+|+++||+|+. .+.. .
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 2221 1
Q ss_pred ------HHHHHHHhcCCCCC------CCCCCCcEEEeccCCCCChhhHHHHHHHHHH--H-HhhhcCCCCCCcceEEEEe
Q 001915 613 ------RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAE--L-QELKANPHRNAKGTVIEAG 677 (996)
Q Consensus 613 ------rv~~eL~~~gl~~e------~~gg~ipvVeISAktGeGIdEL~eaIl~lae--l-~elk~~p~r~~~g~Vies~ 677 (996)
++..+|..+++..+ .|+++++++++||++|+|+++|++.+..+++ + ..+..+++.++.++|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 12345566676654 5678899999999999999999999876553 2 3567778889999999999
Q ss_pred eecCCCcEEEEEEEcCEeccCcEEEEcccce----e---------------------------------E--eecccccc
Q 001915 678 LHKSKGPVATFILQNGTLKKGDVVVCGEAFG----K---------------------------------I--IGLNGVPI 718 (996)
Q Consensus 678 ~dkgrG~Vat~lV~~GtLk~GD~VviG~~~g----k---------------------------------V--~Gl~g~P~ 718 (996)
.++|+|++++++|++|+|++||.+++++.+| + + .||+++ .
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~ 320 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-L 320 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-C
Confidence 9999999999999999999999999988764 2 2 266776 8
Q ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHH
Q 001915 719 AGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQAL 798 (996)
Q Consensus 719 aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L 798 (996)
+|+.|.++.+++ +.++.+. ..++ +. .+ . .+.+++++|||||++||+|||.++|
T Consensus 321 ~g~~~~v~~~~~-~~~~~~~---~~~~--~~-----------~~----~------~~~~~~~vivkad~~Gs~EAi~~~l 373 (586)
T PRK04004 321 AGSPLRVVRDED-VEEVKEE---VEEE--IE-----------EI----R------IETDEEGVVVKADTLGSLEALVNEL 373 (586)
T ss_pred CCCeEEEeCcHH-HHHHHHH---HHHH--HH-----------hc----c------ccccccCEEEEeCCccHHHHHHHHH
Confidence 999999998853 3332211 1111 00 00 0 1246789999999999999999999
Q ss_pred HhCCCCCeeEEEEEcccCcCChhhHHHHHhc------CCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHH
Q 001915 799 QVLPQDNVTLKFLLQATGDISASDVDLAVAS------KAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAM 872 (996)
Q Consensus 799 ~~l~~~~v~i~ii~~~VG~ItesDV~lA~as------~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~ 872 (996)
.++ .++|++++||+||++||++|.++ +|+||||||+++++++++|+++||+|++|+|||||+|+++++|
T Consensus 374 ~~~-----~i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~ 448 (586)
T PRK04004 374 REE-----GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWV 448 (586)
T ss_pred HhC-----CCCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHH
Confidence 975 58899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred Hccccccee---eeeEEeEEEE----EEeecCCceEEEEEEeeceEeeCCcEEEee-CCEEEEEEEEeeeeccccccccc
Q 001915 873 EGLLETVEE---QVPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEV 944 (996)
Q Consensus 873 ~~~l~~~~~---e~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~I~SLk~~k~dV~ev 944 (996)
+++|+|..+ ++++|+|+|+ ++|+.+++.||||+|++|+|++|++ |+| +|+ +.|+|.||||+|+||+||
T Consensus 449 ~~~~~~~~~~~~~~~~g~a~v~il~~~vf~~~~~~IaGc~V~~G~i~~~~~--v~r~~g~--~iG~i~Slk~~k~~V~ev 524 (586)
T PRK04004 449 KEQKEAEKEKILEKIVRPAKIRILPGYVFRQSDPAIVGVEVLGGTIKPGVP--LIKEDGK--RVGTIKQIQDQGENVKEA 524 (586)
T ss_pred HhhhcchhhhhhheeeceEEEEEccceeEecCCCeEEEEEEEeCEEecCCE--EEEECCE--EEEEEehhhccCCcccEe
Confidence 999998755 5789999999 8999888999999999999999995 789 996 459999999999999999
Q ss_pred ccCceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHHHH
Q 001915 945 NAGLECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEASA 983 (996)
Q Consensus 945 ~~G~ECGI~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~~~ 983 (996)
++|+||||.|++| +||++||+||||...+..++|++.-+
T Consensus 525 ~~G~Ecgi~i~~~~~g~~~~~gD~i~~~~~~~~~~~l~~~~~ 566 (586)
T PRK04004 525 KAGMEVAISIDGPTVGRQIKEGDILYVDIPEEHAKILEQELK 566 (586)
T ss_pred CCCCEEEEEEecccccCCCCCCCEEEEEEEehhHHHHHHHHH
Confidence 9999999999999 89999999999999999999997543
No 7
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=3.7e-80 Score=727.99 Aligned_cols=454 Identities=32% Similarity=0.516 Sum_probs=388.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc--------------cccEEEEeCCCccc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEA 554 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk--------------~~~ItfIDTPGhE~ 554 (996)
.|+|.|+||||+|||||||+|+|++..+...+.+++|++++++.+....... ...++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4899999999999999999999999988888889999999988876532110 12489999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC-CC--------------hhHH-----
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-AN--------------PERV----- 614 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~-a~--------------~erv----- 614 (996)
|..++.++++.+|++|||||+++++++|+.+++.++...++|+|+++||+|+.. +. ...+
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999989999999999999953 21 1111
Q ss_pred ------HHHHHhcCCCCC------CCCCCCcEEEeccCCCCChhhHHHHHHHHHHH---HhhhcCCCCCCcceEEEEeee
Q 001915 615 ------MQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLH 679 (996)
Q Consensus 615 ------~~eL~~~gl~~e------~~gg~ipvVeISAktGeGIdEL~eaIl~lael---~elk~~p~r~~~g~Vies~~d 679 (996)
..++.++++..+ +|+++++++++||++|+|+++|+++|..+++. ..++.+++.++.|+|++++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 234566676655 57788999999999999999999999866552 357778889999999999999
Q ss_pred cCCCcEEEEEEEcCEeccCcEEEEcccce----eE-----------------------------------eeccccccCC
Q 001915 680 KSKGPVATFILQNGTLKKGDVVVCGEAFG----KI-----------------------------------IGLNGVPIAG 720 (996)
Q Consensus 680 kgrG~Vat~lV~~GtLk~GD~VviG~~~g----kV-----------------------------------~Gl~g~P~aG 720 (996)
+|+|++++++|++|+|++||.+++|+.+| +| .||++ |.+|
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG 320 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAG 320 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCC
Confidence 99999999999999999999999998775 31 35555 5899
Q ss_pred CeEEEeccHH--HHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHH
Q 001915 721 DEFEVVDSLD--VAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQAL 798 (996)
Q Consensus 721 d~~~vv~~e~--~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L 798 (996)
+.|.++++++ ++++.+ .++. . .++ ++.+++++|||||++||+|||.++|
T Consensus 321 ~~~~~~~~e~~~~~~~~~------~~~~--~------~~~---------------~~~~~~~vivkad~~Gs~EAl~~~l 371 (590)
T TIGR00491 321 SPIRVVTDEEIEKVKEEI------LKEV--E------EIK---------------IDTDEEGVVVKADTLGSLEALVNEL 371 (590)
T ss_pred CEEEEcCcHHHHHHHHHH------HHHh--h------hcc---------------cccccccEEEEecCcchHHHHHHHH
Confidence 9998887764 222211 1110 0 011 1245789999999999999999999
Q ss_pred HhCCCCCeeEEEEEcccCcCChhhHHHHHhcC------CEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHH
Q 001915 799 QVLPQDNVTLKFLLQATGDISASDVDLAVASK------AIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAM 872 (996)
Q Consensus 799 ~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~------aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~ 872 (996)
.++. ++|++++||+||++||++|++++ |+||||||+++++++++|+++||+|++|+|||||+|+++++|
T Consensus 372 ~~~~-----i~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~ 446 (590)
T TIGR00491 372 RDMG-----VPIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWI 446 (590)
T ss_pred HhCC-----CcEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHH
Confidence 9774 78899999999999999999985 999999999999999999999999999999999999999999
Q ss_pred Hccccccee---eeeEEeEEEE----EEeecCCceEEEEEEeeceEeeCCcEEEee-CCEEEEEEEEeeeeccccccccc
Q 001915 873 EGLLETVEE---QVPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEV 944 (996)
Q Consensus 873 ~~~l~~~~~---e~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~I~SLk~~k~dV~ev 944 (996)
+++++|.++ +.++|+|+|+ ++|+.++|.||||+|++|+|++|++ |+| +|++| |+|.||||+|+||+||
T Consensus 447 ~~~~~~~~~~~~~~~~~~a~v~il~~~vf~~~~~~i~G~~V~~G~i~~~~~--v~r~~~~~i--G~i~slk~~k~~V~ev 522 (590)
T TIGR00491 447 EGIEEEKKRKWMEAIIKPAKIRLIPKLVFRQSKPAIVGVEVLTGVIRQGYP--LMKDDGETV--GTVRSMQDKGENVKSA 522 (590)
T ss_pred HhhhcchhhhhcceeEEEEEEEEeeheeeeCCCCeEEEEEEecCEEecCCe--EEecCCEEE--EEEchhcccCccccEE
Confidence 999999876 7789999999 8999888999999999999999986 577 56654 9999999999999999
Q ss_pred ccCceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHH
Q 001915 945 NAGLECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEA 981 (996)
Q Consensus 945 ~~G~ECGI~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~ 981 (996)
++|+||||+|++| ++|++||+|++.-..+....|++.
T Consensus 523 ~~G~Ecgi~i~~~~~g~~~~~gD~l~~~i~~~~~~~l~~~ 562 (590)
T TIGR00491 523 SAGQEVAIAIKDVVYGRTIHEGDTLYVDVPENHYHILKEQ 562 (590)
T ss_pred CCCCEEEEEEeCccccCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 9999999999998 899999999999887777777654
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=3.5e-74 Score=704.80 Aligned_cols=448 Identities=34% Similarity=0.507 Sum_probs=383.5
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc--------------cccEEEEeCCCccchHHHHH
Q 001915 495 TIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEAFGAMRA 560 (996)
Q Consensus 495 aIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk--------------~~~ItfIDTPGhE~F~~mr~ 560 (996)
+|++| |||||++|++++++..+++||||||+++.++.....+ ...++|||||||+.|..++.
T Consensus 469 ~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~ 544 (1049)
T PRK14845 469 GILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRK 544 (1049)
T ss_pred eeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHH
Confidence 45555 9999999999999999999999999999988642111 12389999999999999999
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC-CCCh--------------hHHH----------
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANP--------------ERVM---------- 615 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~-~a~~--------------erv~---------- 615 (996)
+++..+|+++||||+++++++|+.+++..+...++|+|+|+||+|+. +++. ++..
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 4431 2222
Q ss_pred -HHHHhcCCCC------CCCCCCCcEEEeccCCCCChhhHHHHHHHHHHH---HhhhcCCCCCCcceEEEEeeecCCCcE
Q 001915 616 -QELSSIGLMP------EDWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLHKSKGPV 685 (996)
Q Consensus 616 -~eL~~~gl~~------e~~gg~ipvVeISAktGeGIdEL~eaIl~lael---~elk~~p~r~~~g~Vies~~dkgrG~V 685 (996)
.+|..+++.. ++|++.+++|++||++|+||++|+++|..+++. ..++.++..++.|+|++++.++|.|++
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v 704 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT 704 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE
Confidence 2345566553 467889999999999999999999999877653 346777888999999999999999999
Q ss_pred EEEEEEcCEeccCcEEEEccc----ceeEe-----------------------------------eccccccCCCeEEEe
Q 001915 686 ATFILQNGTLKKGDVVVCGEA----FGKII-----------------------------------GLNGVPIAGDEFEVV 726 (996)
Q Consensus 686 at~lV~~GtLk~GD~VviG~~----~gkV~-----------------------------------Gl~g~P~aGd~~~vv 726 (996)
++++|++|+|++||.+++|+. +++|. ||+++ .||+.|.++
T Consensus 705 vt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG~~~~v~ 783 (1049)
T PRK14845 705 IDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAGSPIRIV 783 (1049)
T ss_pred EEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCCCeEEEe
Confidence 999999999999999999986 55532 45554 899999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCe
Q 001915 727 DSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNV 806 (996)
Q Consensus 727 ~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v 806 (996)
.++++|++..+ +..++ +.. . .++.+.+++|||||++||+|||.++|.++
T Consensus 784 ~~e~~~~~~~~---~~~~~--~~~-----------~----------~~~~~~~~vivKaDt~GSlEAl~~~L~~~----- 832 (1049)
T PRK14845 784 PTKEKIEKAKE---EVMKE--VEE-----------A----------KIETDKEGILIKADTLGSLEALANELRKA----- 832 (1049)
T ss_pred CCHHHHHHHHH---HHHHH--Hhh-----------h----------ccCcceeeEEEEecccchHHHHHHHHHhC-----
Confidence 99998876321 11111 000 0 01246799999999999999999999976
Q ss_pred eEEEEEcccCcCChhhHHHHHh------cCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHHcccccce
Q 001915 807 TLKFLLQATGDISASDVDLAVA------SKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVE 880 (996)
Q Consensus 807 ~i~ii~~~VG~ItesDV~lA~a------s~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~~~~l~~~~ 880 (996)
.++|++++||+||++||++|++ ++|+||||||+++++|+++|+++||+|++|+|||||||+++++|+++++|..
T Consensus 833 ~i~i~~~~vG~it~~DV~~A~~~~~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~ 912 (1049)
T PRK14845 833 GIPIKKAEVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKK 912 (1049)
T ss_pred CCCEEEeeCCCCCHHHHHHHHhhhccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhh
Confidence 3788999999999999999999 5899999999999999999999999999999999999999999999999986
Q ss_pred ee---eeEEeEEEE----EEeecCCceEEEEEEeeceEeeCCcEEEee-CCEEEEEEEEeeeecccccccccccCceeEE
Q 001915 881 EQ---VPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEVNAGLECGV 952 (996)
Q Consensus 881 ~e---~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI 952 (996)
++ .++|+|+|+ +||+.++|.||||+|++|+|++|+ +|+| +|.+| |+|.||||+|+||+||++|+||||
T Consensus 913 ~~~~~~~~~p~~v~ilp~~vF~~~~~~IaG~~V~~G~i~~~~--~l~r~~~~~i--G~i~Slk~~k~~V~ev~~G~ecgI 988 (1049)
T PRK14845 913 RELFEKLIKPGIIRLLPDCIFRRSNPAIVGVEVLEGTLRVGV--TLIKEDGMKV--GTVRSIKDRGENVKEAKAGKAVAI 988 (1049)
T ss_pred hhhhhcccCceEEEeccceEEeCCCCeEEEEEEeeCEEecCc--EEEecCCEEE--EEEchHhccCccccEeCCCCEEEE
Confidence 54 589999999 999988899999999999999997 5678 56544 999999999999999999999999
Q ss_pred EEccCC---CCCCCCEEEEEEEEEeehhHHHHH
Q 001915 953 GAADYD---DLEEGDIIEAFNSIQRKRTLEEAS 982 (996)
Q Consensus 953 ~i~~f~---d~~~GD~ie~y~~~~~~~~l~~~~ 982 (996)
+|++|. +|++||+|+++-..+..+.|++.-
T Consensus 989 ~i~~~~~gr~~~~gD~l~~~i~~~~~~~l~~~~ 1021 (1049)
T PRK14845 989 AIEGAILGRHVDEGETLYVDVPESHVRELYHKY 1021 (1049)
T ss_pred EEecccccCCCCCCCEEEEecCHHHHHHHHHHH
Confidence 999984 999999999999998888886543
No 9
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-57 Score=522.92 Aligned_cols=464 Identities=31% Similarity=0.440 Sum_probs=374.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee----------C----CccccEEEEeCCCccc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------D----GKLQPCVFLDTPGHEA 554 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i----------d----gk~~~ItfIDTPGhE~ 554 (996)
-|.|+||||||+|.|||-||+.|+++++..++++||||.|++.+++... + .+-..+.+||||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 4889999999999999999999999999999999999999988776530 0 1123488999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC-CCC-----------------------
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GAN----------------------- 610 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~-~a~----------------------- 610 (996)
|+.+|.|+...||++|||+|+.+|+.+||++.+++++..+.|+||++||+|.. +|.
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999973 221
Q ss_pred --hhHHHHHHHhcCCCCCCC------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhh-hcCCCCCCcceEEEEeeecC
Q 001915 611 --PERVMQELSSIGLMPEDW------GGDIPMVQISALKGEKVDDLLETIMLVAELQEL-KANPHRNAKGTVIEAGLHKS 681 (996)
Q Consensus 611 --~erv~~eL~~~gl~~e~~------gg~ipvVeISAktGeGIdEL~eaIl~lael~el-k~~p~r~~~g~Vies~~dkg 681 (996)
...+..+++++|++...| +..+.++|+||.+|+||.+|+-+|+.+++-... +-..-...+++|+++....|
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecC
Confidence 123455666677665433 345789999999999999999999988764322 22244467899999999999
Q ss_pred CCcEEEEEEEcCEeccCcEEEEcccceeEe-e---------cccc---------------------------ccCCCeEE
Q 001915 682 KGPVATFILQNGTLKKGDVVVCGEAFGKII-G---------LNGV---------------------------PIAGDEFE 724 (996)
Q Consensus 682 rG~Vat~lV~~GtLk~GD~VviG~~~gkV~-G---------l~g~---------------------------P~aGd~~~ 724 (996)
.|+++.+++.+|.|+.||.|++...-|.|. . |+.+ -+||..++
T Consensus 713 ~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~ 792 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLL 792 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeE
Confidence 999999999999999999887655556521 1 1122 23444444
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCC
Q 001915 725 VVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQD 804 (996)
Q Consensus 725 vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~ 804 (996)
|+.-++.--.+ +... .-.|+++++. ++....++.|.|.+.||||||.++|..
T Consensus 793 VvgpeDd~e~l--------k~~~--------m~dl~~~l~~--------Id~sgeGv~vqastlgslealleflk~---- 844 (1064)
T KOG1144|consen 793 VVGPEDDIEEL--------KEEA--------MEDLESVLSR--------IDKSGEGVYVQASTLGSLEALLEFLKT---- 844 (1064)
T ss_pred EeCCcccHHHH--------HHHH--------HHHHHHHHHH--------hhccCCceEEEecccchHHHHHHHHhh----
Confidence 44211111110 0000 0012223322 334567899999999999999999984
Q ss_pred CeeEEEEEcccCcCChhhHHHHHh------cCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHHccccc
Q 001915 805 NVTLKFLLQATGDISASDVDLAVA------SKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLET 878 (996)
Q Consensus 805 ~v~i~ii~~~VG~ItesDV~lA~a------s~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~~~~l~~ 878 (996)
++|.|...++|||...|||.|.+ .+|+||||.|++..+|+.+|.++||+||..+|||||+|.+.+|.+++++.
T Consensus 845 -~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~ 923 (1064)
T KOG1144|consen 845 -VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEE 923 (1064)
T ss_pred -cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 66777788999999999999987 68999999999999999999999999999999999999999999999987
Q ss_pred ceeee---eEEeEEEE----EEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeE
Q 001915 879 VEEQV---PIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECG 951 (996)
Q Consensus 879 ~~~e~---~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECG 951 (996)
..++. .+.+|.++ +||+...|.|.|+.|.+|.++.|+++||.. -+.|+.|.|+||.++++.|.++++|+|++
T Consensus 924 kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVa 1002 (1064)
T KOG1144|consen 924 KKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQEVA 1002 (1064)
T ss_pred HHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCeEE
Confidence 77663 44555543 689999999999999999999999999996 45689999999999999999999999999
Q ss_pred EEEcc---------CCCCCCCCEEEEEEEEEeehhHHHHH
Q 001915 952 VGAAD---------YDDLEEGDIIEAFNSIQRKRTLEEAS 982 (996)
Q Consensus 952 I~i~~---------f~d~~~GD~ie~y~~~~~~~~l~~~~ 982 (996)
|.|++ .+.|-..|++++.-..+....|+.+-
T Consensus 1003 iKie~~~~e~~~mfGRHf~~~D~LyS~isR~SId~lK~~f 1042 (1064)
T KOG1144|consen 1003 IKIEASNGEEQKMFGRHFDMEDILYSHISRRSIDILKKAF 1042 (1064)
T ss_pred EEEecCCCCCcchhhcccCccchHHHHhhHhhHHHHHHHH
Confidence 99997 35899999999888777777776543
No 10
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.94 E-value=1.3e-25 Score=267.13 Aligned_cols=446 Identities=22% Similarity=0.294 Sum_probs=288.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeceEEEEEe-eCCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVP-VDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va---------------~se~gGiTqdI~a~~V~i~-idgk~~~ItfIDTPGhE 553 (996)
+..+|+|+||+|||||||+++|+..... .....|+|.......+.+. .++..+.++|||||||.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4568999999999999999999853211 1123466655443333332 14557889999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~i 632 (996)
.|..++.+++..+|++|||||+++++..|+.+.+..+...++|+|+|+||+|+..++.+.+..++... ++. ..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID------AS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999988888889999999999999776666555555442 221 12
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccc--eeE
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAF--GKI 710 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~--gkV 710 (996)
.++++||++|.||++|+++|.... ......++.++.+.|+++..++++|.+++++|.+|+|+.||.|++...- .++
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V 237 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEV 237 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEE
Confidence 489999999999999999997543 2223345677889999999999999999999999999999999876531 122
Q ss_pred ee--c---c----ccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCC--Cccee
Q 001915 711 IG--L---N----GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGL--DLHQL 779 (996)
Q Consensus 711 ~G--l---~----g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~l 779 (996)
.. + + ....|||...++.+.+..++ ...|+.-.....- ....+.++ ..+.+
T Consensus 238 ~~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~---------------~~~Gdtl~~~~~~----~~~~l~~~~~~~P~v 298 (600)
T PRK05433 238 DEVGVFTPKMVPVDELSAGEVGYIIAGIKDVRD---------------ARVGDTITLAKNP----AEEPLPGFKEVKPMV 298 (600)
T ss_pred EEeeccCCCceECcEEcCCCEEEEecccccccc---------------cCCCCEEECCCCc----cccCCCCCCCCCcEE
Confidence 11 1 1 12368997666543321111 1112111010000 00011222 23567
Q ss_pred EEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhH------HhHHHhcCc
Q 001915 780 NVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSV------KTYADNKGV 853 (996)
Q Consensus 780 ~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~------~~~A~~~~V 853 (996)
..-+.+...+..+.|.++|.+|..++..+.+- . .++.+++.||.+...... .++.++.|+
T Consensus 299 ~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~-------------e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~ 364 (600)
T PRK05433 299 FAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-P-------------ETSQALGFGFRCGFLGLLHMEIIQERLEREFDL 364 (600)
T ss_pred EEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-e-------------cCCcceecceEeecHHHHHHHHHHHHHHHhhCc
Confidence 67788888999999999999999999998753 1 134466667666655432 234445587
Q ss_pred eEEEe--chHhHHH---------HHHH-----HHHHcccccceeeeeEEeEE----EEEEeecCCceEEEEEEeeceEee
Q 001915 854 EIRLY--RVIYDLI---------DDMR-----NAMEGLLETVEEQVPIGSAE----VRAIFSSGSGRVAGCMVSEGKLVK 913 (996)
Q Consensus 854 ~I~~~--~IIY~Li---------ddik-----~~~~~~l~~~~~e~~~G~A~----V~~vF~~~~g~IaGc~V~~G~i~~ 913 (996)
++..- +|+|+-. ++-. ..|..+|+|..+-.++=+.+ |........|.+.|+.-.++
T Consensus 365 ~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~---- 440 (600)
T PRK05433 365 DLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGN---- 440 (600)
T ss_pred eEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCC----
Confidence 77654 6777642 1000 01223344433322211110 00112235788888775331
Q ss_pred CCcEEEeeCCEEEEEEEEeee-ecccccccccccCceeEEEEccCCCCCCCCEE-----------EEEEEEEeehhHHHH
Q 001915 914 GCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGLECGVGAADYDDLEEGDII-----------EAFNSIQRKRTLEEA 981 (996)
Q Consensus 914 ~~~vrviR~g~vi~~G~I~SL-k~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i-----------e~y~~~~~~~~l~~~ 981 (996)
.+ .+.|.--++.| ..|-++++.+..|+ |..--.|..+++.|.+ .++..+--+..-...
T Consensus 441 --~~------~i~~~~Pl~e~~~~~~~~Lks~T~G~--gs~~~~~~~Y~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 510 (600)
T PRK05433 441 --RV------ELTYELPLAEIVFDFFDRLKSVSRGY--ASLDYEFIGYRESDLVKLDILINGEPVDALSFIVHRDKAYER 510 (600)
T ss_pred --eE------EEEEEechHHhhhhHHHHhHhhcCCE--EEEEEEECCcccccEEEEEEEECCcccceeEEeeeHHHHHHH
Confidence 11 14577778888 99999999999998 3332346677777554 444444333334444
Q ss_pred HHHHHHhhh
Q 001915 982 SASMASALE 990 (996)
Q Consensus 982 ~~~~~~~~~ 990 (996)
.+.+...|+
T Consensus 511 ~~~~~~~l~ 519 (600)
T PRK05433 511 GRALVEKLK 519 (600)
T ss_pred HHHHHHHHH
Confidence 455555444
No 11
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.94 E-value=1.7e-25 Score=266.03 Aligned_cols=447 Identities=21% Similarity=0.278 Sum_probs=285.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc---------------cccCCceeeeceEEEEEee-CCccccEEEEeCCCccc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~---------------se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~ 554 (996)
..+|+|+||+|||||||+++|+...... ....|+|.......+.+.. ++..+.++|||||||+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998642111 1224666554333333221 45567899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCCc
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIP 633 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~ip 633 (996)
|..++.+++..||++|||||++++.+.|+.+.+..+...++|+|+|+||+|+...+.+.+..++... ++. ...
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------ASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------cce
Confidence 9999999999999999999999999999998888877789999999999999766655555555442 211 125
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccc--eeEe
Q 001915 634 MVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAF--GKII 711 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~--gkV~ 711 (996)
++++||++|.||++||++|.... .....+++.++.+.|+++..++++|.+++++|.+|+|+.||.|++...- .++.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l--p~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~ 234 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV--PPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVD 234 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEe
Confidence 89999999999999999997542 2233345677889999999999999999999999999999999876531 1221
Q ss_pred --ec-c------ccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCC--CcceeE
Q 001915 712 --GL-N------GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGL--DLHQLN 780 (996)
Q Consensus 712 --Gl-~------g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~l~ 780 (996)
++ . ....+||...++.+.+..++ ...|+.-...+. .....+.++ ..+.+.
T Consensus 235 ~i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~---------------~~~Gdtl~~~~~----~~~~~l~~~~~~~P~v~ 295 (595)
T TIGR01393 235 EVGVFTPKLTKTDELSAGEVGYIIAGIKDVSD---------------VRVGDTITHVKN----PAKEPLPGFKEVKPMVF 295 (595)
T ss_pred EEEEecCCceECCEEcCCCEEEEeccccccCc---------------cCCCCEEECCCC----ccccCCCCCcCCCcEEE
Confidence 11 1 12368997666654322111 111211101000 000011122 235677
Q ss_pred EEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChh------HHhHHHhcCce
Q 001915 781 VIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGS------VKTYADNKGVE 854 (996)
Q Consensus 781 vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~------~~~~A~~~~V~ 854 (996)
.-+.+...+..+.|.++|.+|..++..+.+-. ..+.+++.||.+..... ..++.++.|++
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--------------e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~ 361 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--------------ESSPALGFGFRCGFLGLLHMEIIQERLEREFNLD 361 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEEe--------------cCCcccccccEEeeeeHHHHHHHHHHHHHHhCCe
Confidence 78889999999999999999999999988642 13445555555553332 12344455777
Q ss_pred EEEe--chHhHHH--H-------HHH-----HHHHcccccceeeeeEEeEE----EEEEeecCCceEEEEEEeeceEeeC
Q 001915 855 IRLY--RVIYDLI--D-------DMR-----NAMEGLLETVEEQVPIGSAE----VRAIFSSGSGRVAGCMVSEGKLVKG 914 (996)
Q Consensus 855 I~~~--~IIY~Li--d-------dik-----~~~~~~l~~~~~e~~~G~A~----V~~vF~~~~g~IaGc~V~~G~i~~~ 914 (996)
+... +|+|+.. + +-. ..+..+|+|..+-.++=+.+ |........|.+.|+...++
T Consensus 362 v~~~~P~V~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~----- 436 (595)
T TIGR01393 362 LITTAPSVIYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP----- 436 (595)
T ss_pred eEEecCEEEEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-----
Confidence 6654 6777641 0 000 01122334433322211110 00112235688888775432
Q ss_pred CcEEEeeCCEEEEEEEEeee-ecccccccccccCceeEEEEccCCCCCCCCE-----------EEEEEEEEeehhHHHHH
Q 001915 915 CGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGLECGVGAADYDDLEEGDI-----------IEAFNSIQRKRTLEEAS 982 (996)
Q Consensus 915 ~~vrviR~g~vi~~G~I~SL-k~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~-----------ie~y~~~~~~~~l~~~~ 982 (996)
..+ .+.|.--++.| ..|-++++.+..|+ |..--.|..+++.|. +.++..+--+..-....
T Consensus 437 ~~~------~i~~~~Plae~~~~~~~~Lks~T~G~--gs~~~~~~~Y~~~~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~ 508 (595)
T TIGR01393 437 NRV------ELIYEMPLAEIVYDFFDKLKSISRGY--ASFDYELIGYRPSDLVKLDILINGEPVDALSFIVHRDKAYSRG 508 (595)
T ss_pred CeE------EEEEEeccchhhhchhHHhhhhcCCE--EEEEEEECCccccceEEEEEEECCcccceeEEeeeHHHHHHHH
Confidence 111 13466777886 99999999999998 333334666676554 44555444444444555
Q ss_pred HHHHHhhhc
Q 001915 983 ASMASALEG 991 (996)
Q Consensus 983 ~~~~~~~~~ 991 (996)
+.+...|++
T Consensus 509 ~~~~~~l~~ 517 (595)
T TIGR01393 509 REICEKLKE 517 (595)
T ss_pred HHHHHHHHh
Confidence 555555543
No 12
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=6.4e-26 Score=254.87 Aligned_cols=333 Identities=28% Similarity=0.391 Sum_probs=240.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---------------cccccCCceeeeceEEEEEee-CCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV---------------AAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v---------------a~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE 553 (996)
+-.+.+|+.|.|||||||.++|+.... ......|||+......+.+.. ++..+.++|+|||||.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 456899999999999999999974221 234567999887766666654 5678899999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh-cCCCCCCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGDI 632 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~-~gl~~e~~gg~i 632 (996)
+|+....|.+..|.+++|||||+.|+..||......+-..+.-+|-|+||+||+.++++++.+++.. .|+.. .
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~------~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA------S 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc------c
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 45433 3
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccceeE--
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKI-- 710 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gkV-- 710 (996)
..+.+|||+|.||++++++|+.. +...+..++.+..+.++++.+|..+|.++.++|.+|+|++||.|.+-.+ |+.
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~t-g~~y~ 238 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMST-GKEYE 238 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhh--CCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEec-CCEEE
Confidence 48999999999999999999743 3444567788899999999999999999999999999999999977553 442
Q ss_pred ---eecc-------ccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeE
Q 001915 711 ---IGLN-------GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLN 780 (996)
Q Consensus 711 ---~Gl~-------g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 780 (996)
+|+- +.-.+|+.-++..+.+..+. ++.|++ ++... ......+.|+....-.
T Consensus 239 V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d---------------~~VGDT-iT~~~---~p~~e~LpGfk~~~P~ 299 (603)
T COG0481 239 VDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRD---------------ARVGDT-ITLAS---NPATEPLPGFKEVKPM 299 (603)
T ss_pred EEEEeeccCCccccccccCCceeEEEEeeeeccc---------------Ccccce-EeccC---CCccccCCCCCcCCce
Confidence 2221 11247887666655544332 122222 22111 1122233444322211
Q ss_pred EE--EEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhH------HhHHHhcC
Q 001915 781 VI--MKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSV------KTYADNKG 852 (996)
Q Consensus 781 vI--iKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~------~~~A~~~~ 852 (996)
++ +=+=..-..|.++++|.+|.-++..+..-.. +|.|.-+||.+....-. .++-.+.+
T Consensus 300 Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~E--------------tS~ALGfGfRcGFLGlLHmeiiqERLeREf~ 365 (603)
T COG0481 300 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEPE--------------TSQALGFGFRCGFLGLLHMEIIQERLEREFD 365 (603)
T ss_pred EEEeecccChhHHHHHHHHHHhcccccceeeeccc--------------cchhccCceeehhhhHHHHHHHHHHHHHhhC
Confidence 21 1122245689999999999888877764332 35566666666655421 22444566
Q ss_pred ceEEEe--chHhHH
Q 001915 853 VEIRLY--RVIYDL 864 (996)
Q Consensus 853 V~I~~~--~IIY~L 864 (996)
++++.- +|+|++
T Consensus 366 ldlI~TaPsV~Y~v 379 (603)
T COG0481 366 LDLITTAPSVVYKV 379 (603)
T ss_pred cceEecCCceEEEE
Confidence 766653 677765
No 13
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.94 E-value=1.3e-24 Score=258.28 Aligned_cols=329 Identities=26% Similarity=0.327 Sum_probs=220.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F 555 (996)
.+|+|+||+|||||||+++|+..... .....|+|.......+ .++++.++|||||||++|
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v----~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI----RYNGTKINIVDTPGHADF 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE----EECCEEEEEEECCCHHHH
Confidence 47999999999999999999853111 1123466655433333 334678999999999999
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh----cCCCCCCCCCC
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGGD 631 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~----~gl~~e~~gg~ 631 (996)
...+.++++.+|++|||||+.++.++|+.+++..+...++|+|||+||+|+.+++.+.+..++.. .+...+. ..
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~--l~ 155 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ--LD 155 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc--cc
Confidence 99999999999999999999999999999999999999999999999999987666555544333 2221111 24
Q ss_pred CcEEEeccCCCC----------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEE
Q 001915 632 IPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVV 701 (996)
Q Consensus 632 ipvVeISAktGe----------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~V 701 (996)
+|++++||++|. |++.||+.|+... .....+++.++...|..+..+++.|.+++++|.+|+|++||.|
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l--P~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V 233 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV--PAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhC--CCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEE
Confidence 789999999996 7999999887542 2222345667888999999999999999999999999999999
Q ss_pred EEcccc-----eeE---eeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHH
Q 001915 702 VCGEAF-----GKI---IGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAV 766 (996)
Q Consensus 702 viG~~~-----gkV---~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~ 766 (996)
++.+.- .+| +.+.| . -.|||.+.+.. .+. ...|+.-...+.- ..+
T Consensus 234 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~g-l~~------------------i~~Gdtl~~~~~~-~~l 293 (594)
T TIGR01394 234 ALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAG-LED------------------INIGETIADPEVP-EAL 293 (594)
T ss_pred EEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeC-Ccc------------------cCCCCEEeCCCcc-ccC
Confidence 887542 233 33322 2 26899876542 111 0111111010000 000
Q ss_pred hcCcccCCCcceeEEEEEeccc---chHH------HHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEec
Q 001915 767 SAGKLSGLDLHQLNVIMKVDVQ---GSIE------AVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFN 837 (996)
Q Consensus 767 ~~~~~~~~~~~~l~vIiKaDv~---GSlE------Ai~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fn 837 (996)
. ...+..+.+.+.+.+... |.-+ .|.++|.++..+++.++|.... .++.+++++-
T Consensus 294 ~---~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~-------------~~~~~~v~g~ 357 (594)
T TIGR01394 294 P---TITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTE-------------SADKFEVSGR 357 (594)
T ss_pred C---CCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEec-------------CCCeEEEEEE
Confidence 0 011234677777776433 4433 3899999998889999886653 1234444332
Q ss_pred -CCCChhHHhHHHhcCceEEEe--chHhHH
Q 001915 838 -VKAPGSVKTYADNKGVEIRLY--RVIYDL 864 (996)
Q Consensus 838 -v~~~~~~~~~A~~~~V~I~~~--~IIY~L 864 (996)
---..-+.+..+++|+++... .|+|+-
T Consensus 358 GelHL~il~e~lrreg~e~~~~~P~V~yre 387 (594)
T TIGR01394 358 GELHLSILIETMRREGFELQVGRPQVIYKE 387 (594)
T ss_pred CHHHHHHHHHHHhccCceEEEeCCEEEEEe
Confidence 111111233333447766654 788874
No 14
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.94 E-value=1.9e-25 Score=265.17 Aligned_cols=228 Identities=25% Similarity=0.334 Sum_probs=173.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC---CccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s---~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+|+++||+|||||||+++|++. .+......|+|+++++..+.+ ++ ..++|||||||+.|..++..++..+|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~--~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL--PD--YRLGFIDVPGHEKFISNAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe--CC--EEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 37999999999999999999863 333445678999987766543 33 689999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|||||++++.++|+.+++..+...++| +|||+||+|+.+... +.+..++...- ....+...++++++||++|+||+
T Consensus 77 aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l-~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL-NSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH-HHhCCCCCCcEEEEeCCCCCCch
Confidence 9999999999999999999999989999 999999999964321 11222222210 00011124789999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeecc--cc----cc
Q 001915 647 DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGLN--GV----PI 718 (996)
Q Consensus 647 EL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl~--g~----P~ 718 (996)
+++++|..+.+..+.. ..+.++...|..++..+|.|+|++|.|.+|+|++||.+.+.+. ..+|.++. +. -.
T Consensus 156 eL~~~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~ 234 (581)
T TIGR00475 156 ELKKELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAY 234 (581)
T ss_pred hHHHHHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEE
Confidence 9999987665433221 1345677778888888999999999999999999999999864 34455553 22 24
Q ss_pred CCCeEEE
Q 001915 719 AGDEFEV 725 (996)
Q Consensus 719 aGd~~~v 725 (996)
+|+.+.+
T Consensus 235 aG~rval 241 (581)
T TIGR00475 235 AGQRIAL 241 (581)
T ss_pred CCCEEEE
Confidence 6666543
No 15
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-25 Score=256.13 Aligned_cols=209 Identities=29% Similarity=0.405 Sum_probs=178.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC---------------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK---------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~---------------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
.+-.+++|+.|+|||||||.++|+... .......|||..-....+.+.. +..+.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeecCCCcc
Confidence 456789999999999999999997321 1234567899776665665543 777899999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCc
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ip 633 (996)
+|+....|.+..||++||||||.+|++.||...+..+.+.+..+|.|+||+|++.++++++..++.+.--.. ..+
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~ 211 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAE 211 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887742111 237
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcc
Q 001915 634 MVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~ 705 (996)
++.+|||+|.|++++|++|++- ++..+...+.++...++.+.++..+|.++.+.|.+|.+++||.|.+..
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~ 281 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAA 281 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEee
Confidence 9999999999999999999743 344455667788899999999999999999999999999999997754
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.93 E-value=2.5e-24 Score=244.85 Aligned_cols=208 Identities=32% Similarity=0.390 Sum_probs=156.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.+...+|+|+||+|||||||+++|++... ......|+|++..... +......++||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~----~~~~~~~i~~iDtPG 84 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE----YETEKRHYAHVDCPG 84 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE----ecCCCcEEEEEECCC
Confidence 45667899999999999999999975210 1123568888764333 334556799999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC--hhHHHHH----HHhcCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQE----LSSIGLM 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~--~erv~~e----L~~~gl~ 624 (996)
|+.|...+.+++..+|+++||+|+++++++|+.+++..+...++| +|+++||+|+.... .+.+..+ +...++.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 68899999996321 1112222 2233332
Q ss_pred CCCCCCCCcEEEeccCCCC--------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEec
Q 001915 625 PEDWGGDIPMVQISALKGE--------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGe--------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk 696 (996)
...++++++||++|. ++++|++.|..... ......+.++...|.+++..++.|++++|.|.+|+|+
T Consensus 165 ----~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 165 ----GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP--TPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred ----cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC--CCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 124799999999983 45666666653211 1112234567778888998999999999999999999
Q ss_pred cCcEEEEcc
Q 001915 697 KGDVVVCGE 705 (996)
Q Consensus 697 ~GD~VviG~ 705 (996)
+||.+++.+
T Consensus 239 ~gd~v~i~p 247 (394)
T PRK12736 239 VGDEVEIVG 247 (394)
T ss_pred cCCEEEEec
Confidence 999998754
No 17
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.93 E-value=1.2e-24 Score=259.52 Aligned_cols=214 Identities=28% Similarity=0.361 Sum_probs=164.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+|+++||+|||||||+++|.+.. +......|+|+++++..+... .+..++|||||||+.|...+..++..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 368999999999999999998643 334455799999876654431 23468999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
++||||+++++++|+.+++..+...++| +|||+||+|+.+. ..+.+..++...- ........++|++||++|.||+
T Consensus 78 ~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l--~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL--REYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH--HhcCCCCCcEEEEeCCCCCCCH
Confidence 9999999999999999999999988988 5799999999642 1222333333210 0000124689999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 647 DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 647 EL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
+|+++|..+.. .....+.++...|..++..+|.|+|++|.|.+|+|++||.+.+.+. ..+|.++
T Consensus 156 ~L~~~L~~~~~---~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsI 221 (614)
T PRK10512 156 ALREHLLQLPE---REHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGL 221 (614)
T ss_pred HHHHHHHHhhc---cccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEE
Confidence 99999975432 1122455677778888888999999999999999999999988653 2345554
No 18
>PRK10218 GTP-binding protein; Provisional
Probab=99.92 E-value=5.9e-24 Score=252.80 Aligned_cols=233 Identities=27% Similarity=0.356 Sum_probs=174.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc--c--------------cccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA--A--------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va--~--------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
.+..+|+|+||+|||||||+++|+..... . ....|+|... ....+.++++.++|||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~----~~~~i~~~~~~inliDTPG~ 78 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILA----KNTAIKWNDYRINIVDTPGH 78 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEE----EEEEEecCCEEEEEEECCCc
Confidence 35578999999999999999999863211 1 1123444433 22333456688999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcC--CCCCCCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIG--LMPEDWGG 630 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~g--l~~e~~gg 630 (996)
..|..++.++++.+|++|||||+.++.+.|+..++..+...++|+||++||+|+..++.+.+..++..+- +.......
T Consensus 79 ~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 79 ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999998887777666555431 11111223
Q ss_pred CCcEEEeccCCCC----------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcE
Q 001915 631 DIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 631 ~ipvVeISAktGe----------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~ 700 (996)
++|++++||++|. |+..||+.|+... ......++.++.+.|..+..+++.|.+++++|.+|+|+.||.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i--P~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~ 236 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV--PAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQ 236 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC--CCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCE
Confidence 5899999999998 5778888776432 111223456788899999899999999999999999999999
Q ss_pred EEEcccc-----e---eEeeccc---cc----cCCCeEEEec
Q 001915 701 VVCGEAF-----G---KIIGLNG---VP----IAGDEFEVVD 727 (996)
Q Consensus 701 VviG~~~-----g---kV~Gl~g---~P----~aGd~~~vv~ 727 (996)
|++.... . +++.+.| .+ .|||.+.+..
T Consensus 237 v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~g 278 (607)
T PRK10218 237 VTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITG 278 (607)
T ss_pred EEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEEC
Confidence 9875431 2 2333322 22 5899887654
No 19
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.92 E-value=1.1e-24 Score=249.51 Aligned_cols=215 Identities=33% Similarity=0.487 Sum_probs=159.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-------------------------------~se~gGiTqdI~a~~V~i~i 537 (996)
....+|+|+||+|||||||+++|+..... ....+|+|+++....+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~--- 80 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE--- 80 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe---
Confidence 34568999999999999999999833211 11257899887665543
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC--CCChhHHHHHHHHHHcCC-CEEEEecccCCCCCChhH-
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--GIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER- 613 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd--gv~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~er- 613 (996)
.+++.++|||||||+.|...+..++..+|++|||+|+++ ++..++.+++..+...++ |+||++||+|+..++.++
T Consensus 81 -~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 81 -TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred -cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 356789999999999999888888999999999999999 899999999988888887 499999999997644322
Q ss_pred --HHHHHH----hcCCCCCCCCCCCcEEEeccCCCCChhhHHHH--------HHHHHHHHhhh---cCCCCCCcceEEEE
Q 001915 614 --VMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAELQELK---ANPHRNAKGTVIEA 676 (996)
Q Consensus 614 --v~~eL~----~~gl~~e~~gg~ipvVeISAktGeGIdEL~ea--------Il~lael~elk---~~p~r~~~g~Vies 676 (996)
+..++. ..++.. ..++++++||++|.||+++.+. |+.. +..+. ...+.++...|.++
T Consensus 160 ~~~~~~i~~~l~~~g~~~----~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~--l~~~~~~~~~~~~p~r~~i~~~ 233 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKP----DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEA--LDNLKPPEKPTDKPLRIPIQDV 233 (425)
T ss_pred HHHHHHHHHHHHhhCCCc----CcceEEEeecccCCCccccccCCCcccHHHHHHH--HhcCCCCccccCCCcEEEEEEE
Confidence 222322 233221 1368999999999999974431 1111 12221 12345677788899
Q ss_pred eeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 677 GLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 677 ~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
+..+|.|++++|.|.+|+|++||.+++++. ..+|.++
T Consensus 234 ~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI 272 (425)
T PRK12317 234 YSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSI 272 (425)
T ss_pred EeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEE
Confidence 989999999999999999999999999763 3344444
No 20
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.1e-24 Score=238.30 Aligned_cols=225 Identities=28% Similarity=0.410 Sum_probs=171.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-------------------------------~se~gGiTqdI~a~~V~i~i 537 (996)
....+++++||+|||||||+.+|+..... ..+..|+|.++....++.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-- 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-- 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec--
Confidence 34568999999999999999998632111 123568888876666553
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-------v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a 609 (996)
..+.++++|||||.+|-..+..++.+||++|||||+.++ ...|++|++-+++..++. +||++||||+..|
T Consensus 83 --~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 83 --DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred --CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 456899999999999999999999999999999999997 899999999999999997 9999999999988
Q ss_pred ChhHHH---HHHHh----cCCCCCCCCCCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhhcCCCCCCc
Q 001915 610 NPERVM---QELSS----IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAK 670 (996)
Q Consensus 610 ~~erv~---~eL~~----~gl~~e~~gg~ipvVeISAktGeGIdE------------L~eaIl~lael~elk~~p~r~~~ 670 (996)
+.+++. .++.. .++.. .+++|+||||.+|+|+.+ |+++|-. +.......+.|+.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~----~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~---~~~p~~~~d~Plr 233 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNP----KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ---LEPPERPLDKPLR 233 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc----cCCeEEecccccCCcccccCcCCcCccCChHHHHHhc---cCCCCCCCCCCeE
Confidence 876643 33333 23322 258899999999999865 4444431 1111122355777
Q ss_pred ceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccc--eeEeecc------ccccCCCeEE
Q 001915 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAF--GKIIGLN------GVPIAGDEFE 724 (996)
Q Consensus 671 g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~--gkV~Gl~------g~P~aGd~~~ 724 (996)
..|.+++...+.|++..++|..|.|++||.+++.+.. +++.++. +.-.+||.+.
T Consensus 234 ~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~ 295 (428)
T COG5256 234 LPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVG 295 (428)
T ss_pred eEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEE
Confidence 7888887778999999999999999999999998753 4455543 1236788664
No 21
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.92 E-value=1.6e-23 Score=238.14 Aligned_cols=229 Identities=28% Similarity=0.345 Sum_probs=162.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC----------------CccccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s----------------~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.++..+|+|+||+|||||||+++|++. ........|+|++..... +...+..++||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~----~~~~~~~~~liDtpG 84 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE----YETENRHYAHVDCPG 84 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE----EcCCCEEEEEEECCc
Confidence 455678999999999999999999732 001223478888864322 344556799999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCCCCC--hhH----HHHHHHhcCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PER----VMQELSSIGLM 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~~a~--~er----v~~eL~~~gl~ 624 (996)
|+.|...+.+++..+|+++||+|+.+++.+|+.+++..+...++|.+ +++||||+.+.. .+. +...+...++.
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999965 689999996422 111 22222222221
Q ss_pred CCCCCCCCcEEEeccCCCC-ChhhHHHHHHHHHH-HHhhhc----CCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccC
Q 001915 625 PEDWGGDIPMVQISALKGE-KVDDLLETIMLVAE-LQELKA----NPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKG 698 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGe-GIdEL~eaIl~lae-l~elk~----~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~G 698 (996)
+..++++++||++|. |..++.+.+..+.+ +..+.+ ..+.++...|.+++..+|.|++++|.|.+|+|++|
T Consensus 165 ----~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T TIGR00485 165 ----GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVG 240 (394)
T ss_pred ----ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCC
Confidence 124799999999985 44444433322222 222222 23446677788888899999999999999999999
Q ss_pred cEEEEcc----cceeEeecc--c----cccCCCeEE
Q 001915 699 DVVVCGE----AFGKIIGLN--G----VPIAGDEFE 724 (996)
Q Consensus 699 D~VviG~----~~gkV~Gl~--g----~P~aGd~~~ 724 (996)
|.+++.+ ...+|.++. + .-.+||.+.
T Consensus 241 d~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~ 276 (394)
T TIGR00485 241 EEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVG 276 (394)
T ss_pred CEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEE
Confidence 9998754 223455543 1 125677653
No 22
>PLN03127 Elongation factor Tu; Provisional
Probab=99.92 E-value=1.2e-23 Score=242.86 Aligned_cols=210 Identities=30% Similarity=0.374 Sum_probs=154.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------C----------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------K----------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~----------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.+...+|+|+||+|||||||+++|.+. . ......+|+|++.....+ ...+.+++|+||||
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~----~~~~~~i~~iDtPG 133 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY----ETAKRHYAHVDCPG 133 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE----cCCCeEEEEEECCC
Confidence 345678999999999999999999622 1 012234789988654433 34456899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC--hhHHHHHHHhcCCCCCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQELSSIGLMPEDW 628 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~ 628 (996)
|..|...+..++..+|+++||+|+.+++++|+.+++..+...++| +|+++||||+.+.. .+.+..++..+- ....|
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l-~~~~~ 212 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL-SFYKF 212 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH-HHhCC
Confidence 999999999999999999999999999999999999999999999 57899999996421 111222222210 00111
Q ss_pred -CCCCcEEEeccC---CCCC-------hhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEecc
Q 001915 629 -GGDIPMVQISAL---KGEK-------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKK 697 (996)
Q Consensus 629 -gg~ipvVeISAk---tGeG-------IdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~ 697 (996)
...++++++||+ +|.| +.+|+++|..... ......+.++...|.+++..+|.|+|++|.|.+|+|++
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp--~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~ 290 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP--EPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 290 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC--CCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEec
Confidence 235899999886 4555 5677777654321 11122334566678888888999999999999999999
Q ss_pred CcEEEEc
Q 001915 698 GDVVVCG 704 (996)
Q Consensus 698 GD~VviG 704 (996)
||.+++.
T Consensus 291 Gd~v~i~ 297 (447)
T PLN03127 291 GEEVEIV 297 (447)
T ss_pred CCEEEEc
Confidence 9999765
No 23
>CHL00071 tufA elongation factor Tu
Probab=99.92 E-value=1.7e-23 Score=239.16 Aligned_cols=207 Identities=32% Similarity=0.390 Sum_probs=154.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.....+|+|+||+|||||||+++|++... ......|+|++.....+ ..++..++|+||||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~----~~~~~~~~~iDtPG 84 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY----ETENRHYAHVDCPG 84 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE----ccCCeEEEEEECCC
Confidence 34567899999999999999999985411 12234788887654332 33456799999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCCh--h----HHHHHHHhcCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP--E----RVMQELSSIGLM 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~--e----rv~~eL~~~gl~ 624 (996)
|..|...+.+++..+|+++||+|+.+++.+|+.+++..+...++| +|+++||+|+..... + ++...+...++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 779999999964221 1 222223333322
Q ss_pred CCCCCCCCcEEEeccCCCCCh------------------hhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEE
Q 001915 625 PEDWGGDIPMVQISALKGEKV------------------DDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGI------------------dEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Va 686 (996)
...++++++||++|.|+ ..|+++|..+. .......+.++...|.+++..++.|+++
T Consensus 165 ----~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~v~~~~g~G~Vv 238 (409)
T CHL00071 165 ----GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI--PTPERDTDKPFLMAIEDVFSITGRGTVA 238 (409)
T ss_pred ----CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC--CCCCCCCCCCEEEEEEEEEEeCCCeEEE
Confidence 12489999999999754 33444333211 0011123456677788888899999999
Q ss_pred EEEEEcCEeccCcEEEEc
Q 001915 687 TFILQNGTLKKGDVVVCG 704 (996)
Q Consensus 687 t~lV~~GtLk~GD~VviG 704 (996)
+|+|.+|+|++||.+.+.
T Consensus 239 ~G~V~sG~l~~Gd~v~i~ 256 (409)
T CHL00071 239 TGRIERGTVKVGDTVEIV 256 (409)
T ss_pred EEEEecCEEeeCCEEEEe
Confidence 999999999999999753
No 24
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.92 E-value=4.5e-24 Score=246.40 Aligned_cols=207 Identities=28% Similarity=0.398 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~i 537 (996)
....+|+++||+|||||||+.+|+...- ......|+|.++.++.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~---- 80 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---- 80 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE----
Confidence 3456899999999999999999874110 11234678888765553
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-------ChhHHHHHHHHHHcCCC-EEEEecccCCC--
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKD-- 607 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-------~~Qt~E~I~~ak~~~IP-IIVVINKiDL~-- 607 (996)
..+++.++|+|||||++|...+..++..+|++|||+|+++|+ ..|+.+++..+...++| +||++||||+.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 345678999999999999999999999999999999999997 47999999999999998 67999999953
Q ss_pred CCCh---hHHHHHHHh----cCCCCCCCCCCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhhcCCCCC
Q 001915 608 GANP---ERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRN 668 (996)
Q Consensus 608 ~a~~---erv~~eL~~----~gl~~e~~gg~ipvVeISAktGeGIdE------------L~eaIl~lael~elk~~p~r~ 668 (996)
+++. +++..++.. .++.. .++++|++||++|+||.+ |+++|..+ .......+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~----~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~---~~~~~~~~~p 233 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNP----EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL---EPPKRPVDKP 233 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCc----ccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC---CCCCcCCCCC
Confidence 3332 333444333 23321 258999999999999974 55554322 1111123446
Q ss_pred CcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 669 ~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
+...|.+++..+|.|++++|.|.+|+|++||.+++.+.
T Consensus 234 ~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~ 271 (446)
T PTZ00141 234 LRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPS 271 (446)
T ss_pred eEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccC
Confidence 66778888888999999999999999999999999874
No 25
>PRK12735 elongation factor Tu; Reviewed
Probab=99.91 E-value=8.1e-24 Score=240.80 Aligned_cols=207 Identities=31% Similarity=0.371 Sum_probs=155.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-------Cc---------cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-------KV---------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s-------~v---------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
+...+|+|+||+|||||||+++|++. .+ ......|+|.+..... +...+..++|+|||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~----~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVE----YETANRHYAHVDCPGH 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeE----EcCCCcEEEEEECCCH
Confidence 34568999999999999999999852 11 1223578888864433 2334567999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCCCCC--hhHHHHH----HHhcCCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQE----LSSIGLMP 625 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~~a~--~erv~~e----L~~~gl~~ 625 (996)
+.|...+.+++..+|+++||+|+.++...|+.+++..+...++|.| +++||+|+.+.. .+.+..+ +..+++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~- 164 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP- 164 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999999999999955 689999996421 1112222 2223321
Q ss_pred CCCCCCCcEEEeccCCCC----------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEe
Q 001915 626 EDWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (996)
Q Consensus 626 e~~gg~ipvVeISAktGe----------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtL 695 (996)
+.+++++++||++|. ++.+|+++|..... ......+.++...|.+++..+|.|++++|.|.+|+|
T Consensus 165 ---~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i 239 (396)
T PRK12735 165 ---GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP--EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIV 239 (396)
T ss_pred ---cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC--CCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEE
Confidence 125899999999995 56677777654311 112223456677788888889999999999999999
Q ss_pred ccCcEEEEcc
Q 001915 696 KKGDVVVCGE 705 (996)
Q Consensus 696 k~GD~VviG~ 705 (996)
++||.+++.+
T Consensus 240 ~~gd~v~i~p 249 (396)
T PRK12735 240 KVGDEVEIVG 249 (396)
T ss_pred eCCCEEEEec
Confidence 9999998775
No 26
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.91 E-value=1.5e-25 Score=212.95 Aligned_cols=96 Identities=47% Similarity=0.773 Sum_probs=89.6
Q ss_pred CcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCce
Q 001915 775 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVE 854 (996)
Q Consensus 775 ~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~ 854 (996)
+.+.+++|||||++||+|||.++|.++++++++++|++++||+||++||.+|.+++|+||||||+++++++++|++.||+
T Consensus 13 ~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~~~~~a~~~~V~ 92 (108)
T PF11987_consen 13 EIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPDAKDLAKKSGVK 92 (108)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HHHHHCHHSSTSE
T ss_pred CCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHHHHHHHHHcCCE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHhHHHHHHHH
Q 001915 855 IRLYRVIYDLIDDMRN 870 (996)
Q Consensus 855 I~~~~IIY~Liddik~ 870 (996)
|+.|+|||+|+||+++
T Consensus 93 I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 93 IRSHNVIYDLIDDIKK 108 (108)
T ss_dssp EEESTTCCHHHHHHHH
T ss_pred EEEeCHHHHHHHHhhC
Confidence 9999999999999985
No 27
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.91 E-value=7.6e-24 Score=244.98 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=157.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEE-------------eeCCc-------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQV-------------PVDGK------------- 540 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i-------------~idgk------------- 540 (996)
...+|+++||+|||||||+.+|.... .......|+|+++++..... .+...
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 34579999999999999999999643 34455679999988764421 01000
Q ss_pred ---cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-CChhHHHHHHHHHHcCCC-EEEEecccCCCCCC-hhHH
Q 001915 541 ---LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-PERV 614 (996)
Q Consensus 541 ---~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~-~erv 614 (996)
...++|+|||||+.|...+..++..+|+++||+|++++ +++|+.+++..+...+++ +|||+||+|+.+.+ .++.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 24689999999999999999999999999999999996 799999999988888886 89999999996421 2222
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeec--------CCCcEE
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVA 686 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dk--------grG~Va 686 (996)
..++..+ ....+...+++|++||++|.||+.|++.|..... ......+.++...|..++..+ ++|+|+
T Consensus 193 ~~ei~~~--l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp--~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv 268 (460)
T PTZ00327 193 YEEIRNF--VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP--IPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVA 268 (460)
T ss_pred HHHHHHH--HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC--CCCCCCCCCcEEEEEEEEeecccCCcccCCceEEE
Confidence 3333321 0011224679999999999999999999864221 111122345555566554333 379999
Q ss_pred EEEEEcCEeccCcEEEEccc
Q 001915 687 TFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 687 t~lV~~GtLk~GD~VviG~~ 706 (996)
+|.|.+|+|++||.+.+++.
T Consensus 269 ~G~v~~G~l~~Gd~v~i~P~ 288 (460)
T PTZ00327 269 GGSILQGVLKVGDEIEIRPG 288 (460)
T ss_pred EEEEeeceEecCCEEEEccC
Confidence 99999999999999999863
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.91 E-value=8.3e-24 Score=244.29 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=156.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~i 537 (996)
+...+|+++||+|||||||+.+|+.... ......|+|.++.++.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~---- 80 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF---- 80 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe----
Confidence 4556899999999999999999863110 11234578888765543
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCC-------hhHHHHHHHHHHcCCC-EEEEecccCCCC-
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDG- 608 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~-------~Qt~E~I~~ak~~~IP-IIVVINKiDL~~- 608 (996)
...++.++|+|||||++|..++..++..+|++|||||++++.. .|+++++..+...++| +||++||||+..
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 3456789999999999999999999999999999999998742 7999999999999996 788999999862
Q ss_pred -CC---hhHHHHHH----HhcCCCCCCCCCCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhhcCCCCC
Q 001915 609 -AN---PERVMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRN 668 (996)
Q Consensus 609 -a~---~erv~~eL----~~~gl~~e~~gg~ipvVeISAktGeGIdE------------L~eaIl~lael~elk~~p~r~ 668 (996)
++ .+++.+++ ...++.. .+++|+++||++|+||.+ |+++|..+ .......+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~----~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i---~~p~~~~~~p 233 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNP----DKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQI---NEPKRPSDKP 233 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCc----ccceEEEEeccccccccccccCCcccchHHHHHHHhhc---CCCccccCCC
Confidence 22 22333333 3344432 247899999999999864 34443221 1112233456
Q ss_pred CcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 669 ~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
+...|.+++..++.|++++|.|.+|+|++||.+++++.
T Consensus 234 lr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~ 271 (447)
T PLN00043 234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPT 271 (447)
T ss_pred cEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCC
Confidence 77788888888999999999999999999999999874
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-23 Score=234.82 Aligned_cols=228 Identities=30% Similarity=0.400 Sum_probs=178.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc----------------cccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~----------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
.-.+|+|+.|+|||||||++.|++..... ....|||+ ......+.+++++|+++|||||.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITI----LaKnTav~~~~~~INIvDTPGHA 79 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITI----LAKNTAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEE----EeccceeecCCeEEEEecCCCcC
Confidence 34689999999999999999998543221 12345553 33344455667899999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh----cCCCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWG 629 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~----~gl~~e~~g 629 (996)
+|.....|.++..|.|+|+|||.+|.||||+..++.+.+.+.+.|||+||+|.+++.++++..+... ++-..+.
T Consensus 80 DFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ-- 157 (603)
T COG1217 80 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ-- 157 (603)
T ss_pred CccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh--
Confidence 9999999999999999999999999999999999999999999999999999999999887776543 3332222
Q ss_pred CCCcEEEeccCCCC----------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCc
Q 001915 630 GDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699 (996)
Q Consensus 630 g~ipvVeISAktGe----------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD 699 (996)
-++|++..||+.|. ++.-||+.|+.. +.....+++.+++..|....+....|.+..++|.+|++++|+
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h--vp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q 235 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDH--VPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHh--CCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCC
Confidence 46899999999984 567788888643 233345667778878877777889999999999999999999
Q ss_pred EEEEcccc--------eeEeecccc-------ccCCCeEEE
Q 001915 700 VVVCGEAF--------GKIIGLNGV-------PIAGDEFEV 725 (996)
Q Consensus 700 ~VviG~~~--------gkV~Gl~g~-------P~aGd~~~v 725 (996)
.+.+-... .+++||.|+ ..|||.+.+
T Consensus 236 ~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVai 276 (603)
T COG1217 236 QVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAI 276 (603)
T ss_pred eEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEE
Confidence 88764332 235666654 257887654
No 30
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.91 E-value=1.2e-23 Score=241.20 Aligned_cols=208 Identities=30% Similarity=0.472 Sum_probs=155.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeceEEEEEe
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVP 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~--va-----------------------------~se~gGiTqdI~a~~V~i~ 536 (996)
+....+|+|+||+|||||||+++|+... +. .....|+|.++....+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-- 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-- 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc--
Confidence 3456789999999999999999997421 10 11245788887665543
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC---CChhHHHHHHHHHHcCC-CEEEEecccCCCCCChh
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG---IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPE 612 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg---v~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~e 612 (996)
...+.++|||||||+.|...+..++..+|++|||||++++ ...++.+++..+...++ |+||++||+|+.+++.+
T Consensus 82 --~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 82 --TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred --cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH
Confidence 3457899999999999998888889999999999999998 78888888877777665 58999999999754433
Q ss_pred H---HHHH----HHhcCCCCCCCCCCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhhcCCCCCCcceE
Q 001915 613 R---VMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTV 673 (996)
Q Consensus 613 r---v~~e----L~~~gl~~e~~gg~ipvVeISAktGeGIdE------------L~eaIl~lael~elk~~p~r~~~g~V 673 (996)
+ +..+ +...++.. ..++++++||++|.||++ |+++|..+ .......+.++...|
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~----~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~---~~~~~~~~~p~r~~i 232 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNP----DTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDAL---EPPEKPTDKPLRIPI 232 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCc----ccceEEEeeccccccccccccCCccccchHHHHHHhcC---CCCCCccCCCcEEEE
Confidence 2 2222 22233211 247899999999999987 44444221 111112345667778
Q ss_pred EEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 674 IEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 674 ies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
.+++..+|.|++++|.|.+|+|++||.+++++.
T Consensus 233 ~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~ 265 (426)
T TIGR00483 233 QDVYSITGVGTVPVGRVETGVLKPGDKVVFEPA 265 (426)
T ss_pred EEEEecCCCeEEEEEEEccceeecCCEEEECCC
Confidence 888888999999999999999999999999763
No 31
>PRK00049 elongation factor Tu; Reviewed
Probab=99.91 E-value=4.3e-23 Score=235.01 Aligned_cols=207 Identities=29% Similarity=0.355 Sum_probs=155.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
+...+|+|+||+|||||||+++|++... ......|+|++..... +..++..++|+|||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~----~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE----YETEKRHYAHVDCPGH 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE----EcCCCeEEEEEECCCH
Confidence 4557899999999999999999985210 1123578888865433 2334567999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCCCCC--hhHHHHHHH----hcCCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQELS----SIGLMP 625 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~~a~--~erv~~eL~----~~gl~~ 625 (996)
..|...+..++..+|+++||+|+.+++.+|+.+++.++...++|.| +++||+|+.... .+.+..++. ..++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~- 164 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP- 164 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC-
Confidence 9999998999999999999999999999999999999999999975 689999996421 111222222 22321
Q ss_pred CCCCCCCcEEEeccCCCC----------ChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEe
Q 001915 626 EDWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (996)
Q Consensus 626 e~~gg~ipvVeISAktGe----------GIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtL 695 (996)
..+++++++||++|. |+..|+++|..... ......+.++...|.+++..+|.|++++|.|.+|+|
T Consensus 165 ---~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i 239 (396)
T PRK00049 165 ---GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP--TPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGII 239 (396)
T ss_pred ---ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC--CCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEE
Confidence 235899999999986 45666666653211 111223456777788888889999999999999999
Q ss_pred ccCcEEEEcc
Q 001915 696 KKGDVVVCGE 705 (996)
Q Consensus 696 k~GD~VviG~ 705 (996)
++||.+++.+
T Consensus 240 ~~gd~v~i~p 249 (396)
T PRK00049 240 KVGEEVEIVG 249 (396)
T ss_pred ecCCEEEEee
Confidence 9999998754
No 32
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=3.8e-23 Score=202.86 Aligned_cols=164 Identities=66% Similarity=0.994 Sum_probs=135.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
|+|+|+|++|+|||||+++|....+...+.+++|++++.+.+.... +....++||||||++.|..++..++..+|++++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 5799999999999999999998887776777889888776665421 235689999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCC-CCCCCCCcEEEeccCCCCChhhHHH
Q 001915 572 VVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP-EDWGGDIPMVQISALKGEKVDDLLE 650 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~-e~~gg~ipvVeISAktGeGIdEL~e 650 (996)
|+|++++...++.+.+..+...++|+++|+||+|+.....+.+...+..+.... +.++..++++++||++|+|+++|++
T Consensus 80 v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 80 VVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred EEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 999999888888888888888899999999999997655555555555443322 2344567899999999999999999
Q ss_pred HHHHHH
Q 001915 651 TIMLVA 656 (996)
Q Consensus 651 aIl~la 656 (996)
+|..++
T Consensus 160 ~l~~~~ 165 (168)
T cd01887 160 AILLLA 165 (168)
T ss_pred HHHHhh
Confidence 998654
No 33
>PLN03126 Elongation factor Tu; Provisional
Probab=99.91 E-value=3.5e-23 Score=240.64 Aligned_cols=208 Identities=31% Similarity=0.357 Sum_probs=154.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.+...+|+++||+|||||||+++|+.... ......|+|.+.....+ ...+..++||||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~----~~~~~~i~liDtPG 153 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEY----ETENRHYAHVDCPG 153 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEE----ecCCcEEEEEECCC
Confidence 44567899999999999999999984211 12344678877654443 23456899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC--hhHHHHH----HHhcCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQE----LSSIGLM 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~--~erv~~e----L~~~gl~ 624 (996)
|+.|...+..++..+|+++||+|+.+|+.+|+.+++..+...++| +||++||+|+.... .+.+..+ +...++.
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999 78899999996421 1222222 2333332
Q ss_pred CCCCCCCCcEEEeccCCCCCh------------------hhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEE
Q 001915 625 PEDWGGDIPMVQISALKGEKV------------------DDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGI------------------dEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Va 686 (996)
..+++++++||++|.++ ..|++.|..+.. ......+.++...|.+++..+|+|+|+
T Consensus 234 ----~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~--~p~r~~~~p~r~~I~~vf~v~g~GtVv 307 (478)
T PLN03126 234 ----GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIP--IPQRQTDLPFLLAVEDVFSITGRGTVA 307 (478)
T ss_pred ----cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCC--CCCCccccceeeEEEEEEEeCCceEEE
Confidence 13589999999998643 233333322100 001112456677788888889999999
Q ss_pred EEEEEcCEeccCcEEEEcc
Q 001915 687 TFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 687 t~lV~~GtLk~GD~VviG~ 705 (996)
+|.|..|+|++||.+++++
T Consensus 308 ~G~V~sG~i~~Gd~v~i~p 326 (478)
T PLN03126 308 TGRVERGTVKVGETVDIVG 326 (478)
T ss_pred EEEEEcCeEecCCEEEEec
Confidence 9999999999999999976
No 34
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=4.8e-24 Score=217.59 Aligned_cols=164 Identities=35% Similarity=0.555 Sum_probs=127.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+..+|+|+||+|||||||+++|+..... .....++|.+.....+. .....+.++|+||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~--~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE--KNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE--BTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc--ccccccceeeccccc
Confidence 3468999999999999999999843311 12345778776665554 134567899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCC-
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGG- 630 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg- 630 (996)
|..|...+.+++..+|++|+|||+.+++..|+.+++..+...++|+|||+||+|+......+...++...-+....+.+
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred ccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999744444444444321111111222
Q ss_pred -CCcEEEeccCCCCChhhHHHHHHHH
Q 001915 631 -DIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 631 -~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
.++++++||++|.|+++|++.|...
T Consensus 160 ~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 160 EIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp STEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccceEEEEecCCCCCHHHHHHHHHHh
Confidence 5799999999999999999998754
No 35
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.90 E-value=6.9e-23 Score=233.93 Aligned_cols=213 Identities=28% Similarity=0.361 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccccCCceeeeceEEEEEe------------e----CC------ccccE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYKVQVP------------V----DG------KLQPC 544 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va---~se~gGiTqdI~a~~V~i~------------i----dg------k~~~I 544 (996)
...+|+++||+|||||||+++|...... .....|+|.++++..+... . +. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3468999999999999999999754221 2334578877764432211 0 11 13679
Q ss_pred EEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-ChhHHHHHHHHHHcCCC-EEEEecccCCCCCCh-hHHHHHHHhc
Q 001915 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP-ERVMQELSSI 621 (996)
Q Consensus 545 tfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~-erv~~eL~~~ 621 (996)
+|||||||+.|...+..++..+|++|||||++++. ..|+.+++..+...+++ +|+++||+|+..... .....++...
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998 89999999988888764 899999999964321 1112222221
Q ss_pred CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecC--------CCcEEEEEEEcC
Q 001915 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKS--------KGPVATFILQNG 693 (996)
Q Consensus 622 gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkg--------rG~Vat~lV~~G 693 (996)
....+...++++++||++|+|+++|+++|..... ......+.++...|.+++..++ +|+|++|.|.+|
T Consensus 163 --l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~--~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 238 (406)
T TIGR03680 163 --VKGTVAENAPIIPVSALHNANIDALLEAIEKFIP--TPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 238 (406)
T ss_pred --hhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC--CCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC
Confidence 1111223578999999999999999999975321 1122234566677777664433 678999999999
Q ss_pred EeccCcEEEEccc
Q 001915 694 TLKKGDVVVCGEA 706 (996)
Q Consensus 694 tLk~GD~VviG~~ 706 (996)
+|++||.+.+++.
T Consensus 239 ~i~~gd~v~i~P~ 251 (406)
T TIGR03680 239 KLKVGDEIEIRPG 251 (406)
T ss_pred EEeCCCEEEEccC
Confidence 9999999999864
No 36
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.89 E-value=2e-21 Score=228.40 Aligned_cols=301 Identities=22% Similarity=0.277 Sum_probs=202.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccccc--------CC----------ceeeeceEEEEEeeCCccccEEEEeCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GG----------ITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~--------gG----------iTqdI~a~~V~i~idgk~~~ItfIDTP 550 (996)
.+..+|+|+||+|+|||||+++|+......... +. ..+++++......+..+++.++|||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356799999999999999999997321110000 00 011222222222234456789999999
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC-----
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM----- 624 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~----- 624 (996)
||+.|.....+++..+|++|+|+|+.+++..++...+..+...++|+|+++||+|+..++..++..++... +..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999899999999999999999999999999999998899999999999999877765554444321 100
Q ss_pred ----------------------C-C----------------------CC-----------------------------CC
Q 001915 625 ----------------------P-E----------------------DW-----------------------------GG 630 (996)
Q Consensus 625 ----------------------~-e----------------------~~-----------------------------gg 630 (996)
. . .+ +.
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~ 247 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGE 247 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCC
Confidence 0 0 00 11
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHHHHHhhh------cC-CCCCCcceEEEEe---eecCCCcEEEEEEEcCEeccCcE
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVAELQELK------AN-PHRNAKGTVIEAG---LHKSKGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~lael~elk------~~-p~r~~~g~Vies~---~dkgrG~Vat~lV~~GtLk~GD~ 700 (996)
-+|+++.||+++.||..|++.|..++....-. .. ...++.|.|++.. .++.+|.++.++|.+|+|+.|+.
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~ 327 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMK 327 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCE
Confidence 26799999999999999999998765422110 01 1234788888887 35689999999999999999999
Q ss_pred EEEccc-----ceeEeecc---c----cccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhc
Q 001915 701 VVCGEA-----FGKIIGLN---G----VPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSA 768 (996)
Q Consensus 701 VviG~~-----~gkV~Gl~---g----~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~ 768 (996)
++.... .++++.+. . .-.|||.+.+.. .+.+ ..|+.-...+ .+.-
T Consensus 328 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~-l~~~------------------~~GDTL~~~~----~~~~ 384 (526)
T PRK00741 328 VRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHN-HGTI------------------QIGDTFTQGE----KLKF 384 (526)
T ss_pred EEeccCCceEEecceEEEecCCceECceeCCCCEEEEEC-CCCC------------------ccCCCccCCC----cccc
Confidence 975442 12223332 1 135888876654 1111 1111110000 0000
Q ss_pred CcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcc
Q 001915 769 GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQA 814 (996)
Q Consensus 769 ~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~ 814 (996)
... ..-.+.+..-|.+...+..+.+..+|.+|..++ .+.+.+..
T Consensus 385 ~~i-~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~ 428 (526)
T PRK00741 385 TGI-PNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPL 428 (526)
T ss_pred CCC-CCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECC
Confidence 000 112467889999999999999999999998888 57776644
No 37
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.89 E-value=4.7e-22 Score=227.59 Aligned_cols=213 Identities=28% Similarity=0.374 Sum_probs=154.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---cccccCCceeeeceEEEEEe----------e------C--C----ccccE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQVP----------V------D--G----KLQPC 544 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v---a~se~gGiTqdI~a~~V~i~----------i------d--g----k~~~I 544 (996)
...+|+++||+|||||||+++|.+... ......|+|.++++....+. + + + ..+.+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 456899999999999999999965322 22335688888765332221 0 0 0 13579
Q ss_pred EEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-ChhHHHHHHHHHHcCC-CEEEEecccCCCCCChh-HHHHHHHhc
Q 001915 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPE-RVMQELSSI 621 (996)
Q Consensus 545 tfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~e-rv~~eL~~~ 621 (996)
+|||||||+.|......++..+|++++|+|++++. ..++.+++..+...++ |+|+|+||+|+...+.. ....++...
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999998888899999999999999988 8999999988887776 59999999999653221 112222221
Q ss_pred CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeec--------CCCcEEEEEEEcC
Q 001915 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVATFILQNG 693 (996)
Q Consensus 622 gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dk--------grG~Vat~lV~~G 693 (996)
....+...++++++||++|.|+++|+++|.... .......+.++...|.+++..+ ++|+|++|.|.+|
T Consensus 168 --l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l--~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 168 --VKGTVAENAPIIPVSALHKVNIDALIEAIEEEI--PTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred --hccccCCCCeEEEEECCCCcCHHHHHHHHHHhC--CCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 111122347899999999999999999987532 1112223456666777766433 4678999999999
Q ss_pred EeccCcEEEEccc
Q 001915 694 TLKKGDVVVCGEA 706 (996)
Q Consensus 694 tLk~GD~VviG~~ 706 (996)
+|++||.+.+.+.
T Consensus 244 ~l~~gd~v~i~P~ 256 (411)
T PRK04000 244 VLKVGDEIEIRPG 256 (411)
T ss_pred EEecCCEEEEcCC
Confidence 9999999999864
No 38
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.88 E-value=3.7e-21 Score=232.89 Aligned_cols=296 Identities=24% Similarity=0.277 Sum_probs=207.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+..+|+|+||+|||||||+++|+..... .....|+|++.....+.+ .++.++||||||
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~----~~~~i~liDTPG 84 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW----KGHRINIIDTPG 84 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE----CCeEEEEEECCC
Confidence 4569999999999999999999732111 012357777765544432 457899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC-----
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~----- 625 (996)
|..|...+.++++.+|++|||+|+.+++..++.+++.++...++|+|+++||+|+..++..+...++... ++..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999876655554444331 1100
Q ss_pred -------------------------------------------------------------------------CC-----
Q 001915 626 -------------------------------------------------------------------------ED----- 627 (996)
Q Consensus 626 -------------------------------------------------------------------------e~----- 627 (996)
+.
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l 244 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAI 244 (689)
T ss_pred ccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 00
Q ss_pred -----CCCCCcEEEeccCCCCChhhHHHHHHHHHHHHh-----------------hhcCCCCCCcceEEEEeeecCCCcE
Q 001915 628 -----WGGDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKGPV 685 (996)
Q Consensus 628 -----~gg~ipvVeISAktGeGIdEL~eaIl~lael~e-----------------lk~~p~r~~~g~Vies~~dkgrG~V 685 (996)
.+.-+|++..||+++.|++.|++.|.....-.. +...|+.++.+.|++...++..|.+
T Consensus 245 ~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i 324 (689)
T TIGR00484 245 RKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQL 324 (689)
T ss_pred HHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeE
Confidence 012256788899999999999999986543211 1123455678889999999999999
Q ss_pred EEEEEEcCEeccCcEEEEccc-----ceeEeecc---ccc----cCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001915 686 ATFILQNGTLKKGDVVVCGEA-----FGKIIGLN---GVP----IAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAG 753 (996)
Q Consensus 686 at~lV~~GtLk~GD~VviG~~-----~gkV~Gl~---g~P----~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~ 753 (996)
+.++|.+|+|+.||.|+.... .++++-+. ..| .|||.+.+..- +.+ ..+
T Consensus 325 ~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl-~~~------------------~~g 385 (689)
T TIGR00484 325 TFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGL-KDT------------------TTG 385 (689)
T ss_pred EEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCC-CCC------------------CCC
Confidence 999999999999999975431 12232222 112 47887765431 100 111
Q ss_pred CCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 754 DGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 754 ~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
+.-...... ..+. .. .+..+.+.+.|.+...+..+.|.++|.+|..++..++|..
T Consensus 386 dtl~~~~~~-~~~~--~~-~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~ 440 (689)
T TIGR00484 386 DTLCDPKID-VILE--RM-EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFT 440 (689)
T ss_pred CEEeCCCCc-cccC--CC-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEE
Confidence 110000000 0000 00 1235789999999999999999999999998888887754
No 39
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.88 E-value=4.1e-22 Score=227.66 Aligned_cols=205 Identities=25% Similarity=0.306 Sum_probs=140.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc---------------------------------ccccCCceeeeceEEEEEeeC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------AAEAGGITQGIGAYKVQVPVD 538 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va---------------------------------~se~gGiTqdI~a~~V~i~id 538 (996)
.+|+|+||+|||||||+++|+..... .....|+|++.++..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 37999999999999999999632110 11234677776544433
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhHH---
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERV--- 614 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~erv--- 614 (996)
..+.+++|||||||+.|...+..++..+|++|||+|+.+|+++|+.+++..+...++| +||++||+|+..++.+.+
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHH
Confidence 3456899999999999998888999999999999999999999999999999888876 889999999976543322
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH------------HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCC
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL------------LETIMLVAELQELKANPHRNAKGTVIEAGLHKSK 682 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL------------~eaIl~lael~elk~~p~r~~~g~Vies~~dkgr 682 (996)
..++..+.. ...+ .+++++++||++|+|++++ ++.|..+ .......+.++...|..+......
T Consensus 157 ~~~~~~~~~-~~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~---~~~~~~~~~p~r~~i~~v~~~~~~ 231 (406)
T TIGR02034 157 KKDYLAFAE-QLGF-RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETV---EVERDAQDLPLRFPVQYVNRPNLD 231 (406)
T ss_pred HHHHHHHHH-HcCC-CCccEEEeecccCCCCcccccCCCccchhHHHHHHHhc---CCCCCcCCCCcccceEEEeecCCC
Confidence 222221100 0011 2478999999999999863 3333221 000111223344444333221111
Q ss_pred CcEEEEEEEcCEeccCcEEEEcc
Q 001915 683 GPVATFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 683 G~Vat~lV~~GtLk~GD~VviG~ 705 (996)
+..+.|.|.+|+|++||.+++.+
T Consensus 232 ~~g~~G~v~~G~l~~gd~v~i~P 254 (406)
T TIGR02034 232 FRGYAGTIASGSVHVGDEVVVLP 254 (406)
T ss_pred cEEEEEEEecceeecCCEEEEeC
Confidence 22267999999999999999876
No 40
>PRK12739 elongation factor G; Reviewed
Probab=99.88 E-value=4.4e-21 Score=232.29 Aligned_cols=296 Identities=24% Similarity=0.297 Sum_probs=208.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+..+|+|+||+|||||||+++|+..... .....|+|++.....+.+ .++.++||||||
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTPG 82 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KGHRINIIDTPG 82 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE----CCEEEEEEcCCC
Confidence 5678999999999999999999742110 012567887765544432 456899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC-----
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~----- 625 (996)
|..|...+.+++..+|++|+|+|+.+++..|+..++.++...++|+|+++||||+...+..++..++... ++..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 162 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQL 162 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999876655554444321 1100
Q ss_pred -------------------CCCC---------------------------------------------------------
Q 001915 626 -------------------EDWG--------------------------------------------------------- 629 (996)
Q Consensus 626 -------------------e~~g--------------------------------------------------------- 629 (996)
..|+
T Consensus 163 Pis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~ 242 (691)
T PRK12739 163 PIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAA 242 (691)
T ss_pred cccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHH
Confidence 0010
Q ss_pred --------CCCcEEEeccCCCCChhhHHHHHHHHHHHHh-----------------hhcCCCCCCcceEEEEeeecCCCc
Q 001915 630 --------GDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKGP 684 (996)
Q Consensus 630 --------g~ipvVeISAktGeGIdEL~eaIl~lael~e-----------------lk~~p~r~~~g~Vies~~dkgrG~ 684 (996)
..+|++..||+++.|++.|++.|.....-.. +..+|+.++.+.|++...++.+|.
T Consensus 243 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 322 (691)
T PRK12739 243 IRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGR 322 (691)
T ss_pred HHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCe
Confidence 1246888899999999999999986543211 112455677888999999999999
Q ss_pred EEEEEEEcCEeccCcEEEEccc-----ceeEeecc---ccc----cCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhc
Q 001915 685 VATFILQNGTLKKGDVVVCGEA-----FGKIIGLN---GVP----IAGDEFEVVDSLDVAREKAEARAFSLRNERISAKA 752 (996)
Q Consensus 685 Vat~lV~~GtLk~GD~VviG~~-----~gkV~Gl~---g~P----~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~ 752 (996)
++.++|.+|+|+.||.|+.... .++++-+. ..| .+||.+.+.. .+.+ ..
T Consensus 323 i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g-l~~~------------------~~ 383 (691)
T PRK12739 323 LTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVG-LKDT------------------TT 383 (691)
T ss_pred EEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeC-CCcc------------------cC
Confidence 9999999999999999875432 11222221 122 4788776653 1111 11
Q ss_pred CCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 753 GDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 753 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
++.-.+.... ..+.. . .+..+.+.+.|.+........|.++|.+|..++..++|..
T Consensus 384 gdtl~~~~~~-~~l~~--~-~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 439 (691)
T PRK12739 384 GDTLCDEKAP-IILES--M-EFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVET 439 (691)
T ss_pred CCEEeCCCCc-cccCC--C-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 1110000000 00000 0 1224788999999999999999999999988888877653
No 41
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=3.9e-22 Score=226.12 Aligned_cols=223 Identities=25% Similarity=0.340 Sum_probs=175.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccchHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F~~ 557 (996)
..+.+|+|+|.||+|||||+|+|++.. ..++..+|+|+|. +...++.++..+.|+||+| +|.|+.
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~----I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS----IDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc----eeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 478999999999999999999999764 5588999999984 4444555567899999999 578888
Q ss_pred HHHHhh-hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCc
Q 001915 558 MRARGA-RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 558 mr~rga-~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ip 633 (996)
++...+ ..+|+|+||+|+.+++..|+...+.++...+.++|||+||||+.+. ..+....++.. .+.. -+..+
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~---l~~a~ 327 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPF---LDFAP 327 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH-Hhcc---ccCCe
Confidence 877665 9999999999999999999999999999999999999999998653 23444444444 2222 23579
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHHHh---------------hhcCCCCCCcce---EEEEeeecCCCcEEEEEEEc-CE
Q 001915 634 MVQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAKGT---VIEAGLHKSKGPVATFILQN-GT 694 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~lael~e---------------lk~~p~r~~~g~---Vies~~dkgrG~Vat~lV~~-Gt 694 (996)
++++||++|.|+++||+++....+... ...+|.....|. +.+..+...+.|.+.+++++ ..
T Consensus 328 i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~ 407 (444)
T COG1160 328 IVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKA 407 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhh
Confidence 999999999999999999876655211 122333333343 45666777888888888777 57
Q ss_pred eccCcEEEEcccceeEeeccccccC
Q 001915 695 LKKGDVVVCGEAFGKIIGLNGVPIA 719 (996)
Q Consensus 695 Lk~GD~VviG~~~gkV~Gl~g~P~a 719 (996)
++..+..|+.+.+++.|||.|+|+.
T Consensus 408 ~~~sY~RyL~n~~R~~f~~~g~Pi~ 432 (444)
T COG1160 408 LHFSYKRYLENRLRKAFGFEGTPIR 432 (444)
T ss_pred CchHHHHHHHHHHHHHcCCCCCcEE
Confidence 8888888899999999999999963
No 42
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.87 E-value=2e-20 Score=220.15 Aligned_cols=301 Identities=20% Similarity=0.241 Sum_probs=202.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccc---c--CC-------------ceeeeceEEEEEeeCCccccEEEEeCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE---A--GG-------------ITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se---~--gG-------------iTqdI~a~~V~i~idgk~~~ItfIDTP 550 (996)
.+..+|+|+||+|+|||||+++|+........ . .+ .++++++......+++.++.++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 46689999999999999999998632111100 0 00 112232222223344566889999999
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC-----
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM----- 624 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~----- 624 (996)
||..|.....+++..+|++|+|||+.+++..++..+++.+...++|+|+++||+|+...+.+++..++... +..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~ 168 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPIT 168 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccEE
Confidence 99999998888999999999999999999999999999888889999999999999876665554444321 000
Q ss_pred ----------------------C-CC---------------------------------------------------CCC
Q 001915 625 ----------------------P-ED---------------------------------------------------WGG 630 (996)
Q Consensus 625 ----------------------~-e~---------------------------------------------------~gg 630 (996)
. .. -+.
T Consensus 169 ~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 248 (527)
T TIGR00503 169 WPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGE 248 (527)
T ss_pred EEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCC
Confidence 0 00 011
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHHHHHhhhc-------CCCCCCcceEEEEee--e-cCCCcEEEEEEEcCEeccCcE
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAGL--H-KSKGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~lael~elk~-------~p~r~~~g~Vies~~--d-kgrG~Vat~lV~~GtLk~GD~ 700 (996)
-+|+++.||.++.||+.|++.|..++.-..-.. ....++.|.|+++.. + +.+|.++.++|.+|+|+.|+.
T Consensus 249 ~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~ 328 (527)
T TIGR00503 249 MTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK 328 (527)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCE
Confidence 247799999999999999999987654221100 012457889999876 6 589999999999999999999
Q ss_pred EEEccc-----ceeEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhc
Q 001915 701 VVCGEA-----FGKIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSA 768 (996)
Q Consensus 701 VviG~~-----~gkV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~ 768 (996)
++.... .++++.+.+ . -.|||.+.++. .+.. +.|+.-...+. +.-
T Consensus 329 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~-~~~~------------------~~GDtl~~~~~----~~~ 385 (527)
T TIGR00503 329 LKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHN-HGTI------------------QIGDTFTQGEK----IKF 385 (527)
T ss_pred EEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEEC-CCCc------------------ccCCEecCCCc----eee
Confidence 975442 112222211 1 25788776553 1111 11111000000 000
Q ss_pred CcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcc
Q 001915 769 GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQA 814 (996)
Q Consensus 769 ~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~ 814 (996)
... ..-.+.+..-|.+...+..+.+..+|.+|..++. +.+.+..
T Consensus 386 ~~i-~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~ 429 (527)
T TIGR00503 386 TGI-PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPL 429 (527)
T ss_pred cCC-CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcC
Confidence 000 1124688899999999999999999999988875 7766543
No 43
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.8e-21 Score=219.33 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=165.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc---cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~v---a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
.|+.+||.+||||||+.++.+... ......|+|.|+++|+... ....+.|+|+|||++|...+..++...|.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~----~d~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL----EDGVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC----CCCceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 688999999999999999986533 3455679999999988764 234799999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC-hhHHHHHH-HhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 570 VIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-PERVMQEL-SSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~-~erv~~eL-~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+||||+++|++.||.|++..+...+++ .|+|+||+|+.+.. .+....++ .... ..+.++|.+|+++|+||+
T Consensus 78 lLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~------l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 78 LLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS------LANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc------cccccccccccccCCCHH
Confidence 999999999999999999999999998 69999999995421 12222222 2222 135789999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 647 DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 647 EL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
+|.+.|..+.+ ....+.+.++.-.|-.++..+|.|+|+||.+.+|++++||.+++.+.
T Consensus 152 ~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~ 209 (447)
T COG3276 152 ELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI 209 (447)
T ss_pred HHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC
Confidence 99999987765 23334445555666677888999999999999999999999999874
No 44
>PRK00007 elongation factor G; Reviewed
Probab=99.87 E-value=1.4e-20 Score=227.96 Aligned_cols=296 Identities=25% Similarity=0.293 Sum_probs=206.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---c---c------------cccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV---A---A------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v---a---~------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+..+|+|+||+|||||||+++|+.... . . ....|+|++.....+. + .++.++|+||||
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~--~--~~~~~~liDTPG 84 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF--W--KDHRINIIDTPG 84 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE--E--CCeEEEEEeCCC
Confidence 456999999999999999999973111 0 0 1356778776544433 2 356899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC------
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM------ 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~------ 624 (996)
|..|.....+++..+|++|||+|+.+|+..|+..++.++...++|+|+++||||+..++..++..++... +..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQL 164 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999876665554444321 100
Q ss_pred ------------------CCCC----------------------------------------------------------
Q 001915 625 ------------------PEDW---------------------------------------------------------- 628 (996)
Q Consensus 625 ------------------~e~~---------------------------------------------------------- 628 (996)
...|
T Consensus 165 pisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~ 244 (693)
T PRK00007 165 PIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAA 244 (693)
T ss_pred cCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHH
Confidence 0000
Q ss_pred -------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHh------------------hhcCCCCCCcceEEEEeeecCCC
Q 001915 629 -------GGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHKSKG 683 (996)
Q Consensus 629 -------gg~ipvVeISAktGeGIdEL~eaIl~lael~e------------------lk~~p~r~~~g~Vies~~dkgrG 683 (996)
+..+|++..||+++.|++.|++.|.....-.. ...+++.++.+.|++...++..|
T Consensus 245 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 324 (693)
T PRK00007 245 LRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVG 324 (693)
T ss_pred HHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCC
Confidence 12356888899999999999999986543211 01124556778899999899999
Q ss_pred cEEEEEEEcCEeccCcEEEEccc-----ceeEe---eccccc----cCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhh
Q 001915 684 PVATFILQNGTLKKGDVVVCGEA-----FGKII---GLNGVP----IAGDEFEVVDSLDVAREKAEARAFSLRNERISAK 751 (996)
Q Consensus 684 ~Vat~lV~~GtLk~GD~VviG~~-----~gkV~---Gl~g~P----~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~ 751 (996)
.++.++|.+|+|++||.++.... .++++ |-+..| .+||.+.+.. .+.+ .
T Consensus 325 ~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~g-l~~~------------------~ 385 (693)
T PRK00007 325 KLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVG-LKDT------------------T 385 (693)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeC-CccC------------------C
Confidence 99999999999999999975321 12222 222222 4788776543 1111 1
Q ss_pred cCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 752 AGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 752 ~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
.++.-...+.. ..+.. .....+.+.+.|.+...+....|.++|.+|..++..++|..
T Consensus 386 ~GdtL~~~~~~-~~l~~---~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 442 (693)
T PRK00007 386 TGDTLCDEKNP-IILES---MEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVST 442 (693)
T ss_pred cCCEeeCCCCc-cccCC---CCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 11110000000 00000 01234788999999999999999999999998888887754
No 45
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.5e-21 Score=209.92 Aligned_cols=302 Identities=30% Similarity=0.362 Sum_probs=192.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC----------------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~----------------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
...+|+.+||+|||||||..+|...- .......|||+.. .++++ +..+..+.++|+|||.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITInt--ahvey--et~~rhyahVDcPGHa 86 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINT--AHVEY--ETANRHYAHVDCPGHA 86 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecc--ceeEE--ecCCceEEeccCCChH
Confidence 45689999999999999999986311 1122355787553 33443 4456789999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC------hhHHHHHHHhcCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN------PERVMQELSSIGLMPE 626 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~------~erv~~eL~~~gl~~e 626 (996)
+|..++..++.+.|++|||++++||.+|||++++.+++..++| +++++||+|+.+.. ..+++..|..+++.
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~-- 164 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP-- 164 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC--
Confidence 9999999999999999999999999999999999999999998 78889999997522 12344556666653
Q ss_pred CCCCCCcEEEeccCCC-CChhhHHHHHHHHHH-HHhhhcCCCC----CCcceEEEEeeecCCCcEEEEEEEcCEeccCcE
Q 001915 627 DWGGDIPMVQISALKG-EKVDDLLETIMLVAE-LQELKANPHR----NAKGTVIEAGLHKSKGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 627 ~~gg~ipvVeISAktG-eGIdEL~eaIl~lae-l~elk~~p~r----~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~ 700 (996)
+.+.|++.-||+.- +|-....+.|..+.+ +.++.+.|.+ ++...|-..+...|+|++++++|.+|+|++|+.
T Consensus 165 --gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~e 242 (394)
T COG0050 165 --GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEE 242 (394)
T ss_pred --CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCE
Confidence 34689999998753 333333333332222 2344455544 444555566777899999999999999999998
Q ss_pred EEE-ccc-ce--eEeecc------ccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHH--H--
Q 001915 701 VVC-GEA-FG--KIIGLN------GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASA--V-- 766 (996)
Q Consensus 701 Vvi-G~~-~g--kV~Gl~------g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~--~-- 766 (996)
+.+ |-. .. .+.|++ ..-.+||.+-+.- |.+ . .+...+++..++++ .++.+.-|.+ +
T Consensus 243 veivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~ll-----Rg~--~-r~~veRGqvLakpg--si~ph~kfeaevyvL 312 (394)
T COG0050 243 VEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLL-----RGV--K-REDVERGQVLAKPG--SIKPHTKFEAEVYVL 312 (394)
T ss_pred EEEecccccceeEEEhHHHHHHHHhccccCCCcceEE-----Eec--c-ccceecceEeecCC--cccccceeeEEEEEE
Confidence 854 321 11 134421 1235666553321 110 1 12222344444443 2222222211 0
Q ss_pred ---hcCcccCCC---cceeEEEEEecccchHHHHHHHHHhCCCCCeeEEE
Q 001915 767 ---SAGKLSGLD---LHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKF 810 (996)
Q Consensus 767 ---~~~~~~~~~---~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~i 810 (996)
..++..++- .+++ ++..+||.|++......-..++.|++.+.+
T Consensus 313 ~keeggrhtpff~~yrpqf-yfRttDVtg~i~l~eg~emvmpgdnv~~~v 361 (394)
T COG0050 313 SKEEGGRHTPFFHGYRPQF-YFRTTDVTGAITLPEGVEMVMPGDNVKMVV 361 (394)
T ss_pred ecccCCCCCCcccCcccee-EEEeeeeeeeEeccCCcceecCCCceEEEE
Confidence 011111110 1234 678899999776655545567778777654
No 46
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.87 E-value=3.1e-21 Score=224.49 Aligned_cols=213 Identities=24% Similarity=0.276 Sum_probs=144.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeceEEEEE
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQV 535 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~---------------------------------se~gGiTqdI~a~~V~i 535 (996)
+...+|+|+||+|+|||||+++|+...... ....|+|++.++..+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~-- 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF-- 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe--
Confidence 456899999999999999999997432110 113466777654433
Q ss_pred eeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCC-CEEEEecccCCCCCChhH-
Q 001915 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER- 613 (996)
Q Consensus 536 ~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~er- 613 (996)
......++|||||||+.|...+..++..+|++|||+|+.+|+++|+.+++..+...++ |+||++||+|+..++.+.
T Consensus 103 --~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 103 --STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred --ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 3345689999999999999888889999999999999999999999999988888776 589999999997544332
Q ss_pred --HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHH--------HHHHHHHHhh-hcCCCCCCcceEEEEeeecCC
Q 001915 614 --VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAELQEL-KANPHRNAKGTVIEAGLHKSK 682 (996)
Q Consensus 614 --v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ea--------Il~lael~el-k~~p~r~~~g~Vies~~dkgr 682 (996)
+..++....... .+...++++++||++|.||+++-+. |+...+.... ....+.++...|..+......
T Consensus 181 ~~i~~~l~~~~~~~-~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~ 259 (474)
T PRK05124 181 ERIREDYLTFAEQL-PGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLD 259 (474)
T ss_pred HHHHHHHHHHHHhc-CCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCc
Confidence 223332210000 0112578999999999999875321 2222111111 111223444444444322121
Q ss_pred CcEEEEEEEcCEeccCcEEEEccc
Q 001915 683 GPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 683 G~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
...+.|.|.+|+|++||.+++++.
T Consensus 260 ~~g~~G~V~sG~l~~Gd~v~i~P~ 283 (474)
T PRK05124 260 FRGYAGTLASGVVKVGDRVKVLPS 283 (474)
T ss_pred ccceEEEEEeEEEecCCEEEEecC
Confidence 122579999999999999999874
No 47
>PRK13351 elongation factor G; Reviewed
Probab=99.87 E-value=1e-20 Score=228.86 Aligned_cols=296 Identities=25% Similarity=0.340 Sum_probs=206.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+..+|+|+||+|||||||+++|+...... ....++|.......+. +.++.++||||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~----~~~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD----WDNHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE----ECCEEEEEEECCC
Confidence 45799999999999999999997432100 0124555554443332 3457899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC-----
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~----- 625 (996)
|..|..++..+++.+|++|+|+|++++...++...+..+...++|+++++||+|+..++..+...++... +...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 9999999999999999999999999999999999999998899999999999999887766655554321 0000
Q ss_pred -------------------CCC----------------------------------------------------------
Q 001915 626 -------------------EDW---------------------------------------------------------- 628 (996)
Q Consensus 626 -------------------e~~---------------------------------------------------------- 628 (996)
..|
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 000
Q ss_pred -------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHh----------------hhcCCCCCCcceEEEEeeecCCCcE
Q 001915 629 -------GGDIPMVQISALKGEKVDDLLETIMLVAELQE----------------LKANPHRNAKGTVIEAGLHKSKGPV 685 (996)
Q Consensus 629 -------gg~ipvVeISAktGeGIdEL~eaIl~lael~e----------------lk~~p~r~~~g~Vies~~dkgrG~V 685 (996)
+..+|++..||++|.||+.|++.|........ ...+++.+..+.|+++..++++|.+
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i 322 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL 322 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE
Confidence 11356888899999999999999986543221 0114556778899999999999999
Q ss_pred EEEEEEcCEeccCcEEEEccc-----ceeEeecc---cc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001915 686 ATFILQNGTLKKGDVVVCGEA-----FGKIIGLN---GV----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAG 753 (996)
Q Consensus 686 at~lV~~GtLk~GD~VviG~~-----~gkV~Gl~---g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~ 753 (996)
+.++|.+|+|++||.++.... .++++-+. .. -.+||.+.+.. .+.++ .+
T Consensus 323 ~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~g-l~~~~------------------~g 383 (687)
T PRK13351 323 TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAG-LKELE------------------TG 383 (687)
T ss_pred EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEEC-cccCc------------------cC
Confidence 999999999999999987542 22333222 22 25788775543 11110 11
Q ss_pred CCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 754 DGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 754 ~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
+.-..... ...+. . .....+.+.+.|.+......+.|.++|.+|..++..+.+-.
T Consensus 384 dtl~~~~~-~~~~~-~--~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 438 (687)
T PRK13351 384 DTLHDSAD-PVLLE-L--LTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEE 438 (687)
T ss_pred CEEeCCCC-ccccC-C--CCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 10000000 00000 0 01224678899999999999999999999988887777643
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=4.6e-21 Score=186.69 Aligned_cols=156 Identities=31% Similarity=0.498 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+|+|+|++|+|||||+++|.+.. +.....+++|.+++++.+.+ .. +..++||||||++.|......++..+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL--PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe--cC-CcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 69999999999999999998643 22233457788776655443 21 46899999999999988888888999999
Q ss_pred EEEEecCCCCChhHHHHHHHHHHcCC-CEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 570 VIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
|+|+|++++...++.+.+..+...+. |+|+++||+|+.... ......++... +. ..+....+++++||++|.|+++
T Consensus 79 i~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 79 LLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIREL-LA-GTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHH-HH-hcCcCCCcEEEEeCCCCcCHHH
Confidence 99999999888888887776666666 899999999996432 11122222221 00 0001246899999999999999
Q ss_pred HHHHHH
Q 001915 648 LLETIM 653 (996)
Q Consensus 648 L~eaIl 653 (996)
+++.|.
T Consensus 157 l~~~l~ 162 (164)
T cd04171 157 LKEYLD 162 (164)
T ss_pred HHHHHh
Confidence 999875
No 49
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=8.1e-21 Score=189.34 Aligned_cols=157 Identities=32% Similarity=0.457 Sum_probs=116.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc---------------cccCCceeeeceEEEEEee-CCccccEEEEeCCCccch
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA---------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~---------------se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F 555 (996)
.+|+++|+++||||||+++|++..... ....|+|.+.....+.+.. ++..+.++|||||||+.|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 369999999999999999998642111 1122444433222222211 456778999999999999
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCCcE
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPM 634 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~ipv 634 (996)
..++.+++..+|++|+|+|++++...++.+.+..+...++|+|+++||+|+..........++... ++. ...+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~ 154 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------PSEA 154 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------cccE
Confidence 999999999999999999999988888887777777778999999999999654444444444332 221 1358
Q ss_pred EEeccCCCCChhhHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIML 654 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~ 654 (996)
+++||++|.||++|+++|..
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred EEeeccCCCCHHHHHHHHHh
Confidence 99999999999999999864
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=4.6e-21 Score=218.65 Aligned_cols=222 Identities=25% Similarity=0.336 Sum_probs=161.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc----------chHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----------AFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE----------~F~~ 557 (996)
....+|+++|++|+|||||+++|++... ...+.+|+|++..... +.++ +..+.||||||+. .|..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~--~~~~--~~~~~liDT~G~~~~~~~~~~~e~~~~ 245 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP--FERN--GKKYLLIDTAGIRRKGKVTEGVEKYSV 245 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE--EEEC--CcEEEEEECCCccccccchhhHHHHHH
Confidence 4567999999999999999999997654 3567788887743323 2233 3479999999963 3333
Q ss_pred HHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 558 mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
++. .++..+|++|+|+|++++...++.+.+.++...++|+|+|+||||+... ..+.+...+... +. +...+++
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~---~~~~~~v 321 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRK-LP---FLDFAPI 321 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHh-cc---cCCCCce
Confidence 333 4679999999999999999999999999988889999999999999621 122333333321 11 1134789
Q ss_pred EEeccCCCCChhhHHHHHHHHHHHHh---------------hhcCCCCCCcc---eEEEEeeecCCCcEEEEEEEcC-Ee
Q 001915 635 VQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAKG---TVIEAGLHKSKGPVATFILQNG-TL 695 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~lael~e---------------lk~~p~r~~~g---~Vies~~dkgrG~Vat~lV~~G-tL 695 (996)
+++||++|.|++++|++|..+.+... +...|.....| .+.++.+...+.+++.+++++- .+
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~ 401 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELL 401 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccC
Confidence 99999999999999999887654211 11222222233 4566777788899998888874 56
Q ss_pred ccCcEEEEcccceeEeecccccc
Q 001915 696 KKGDVVVCGEAFGKIIGLNGVPI 718 (996)
Q Consensus 696 k~GD~VviG~~~gkV~Gl~g~P~ 718 (996)
...+..++.+.+++.+||.|+|+
T Consensus 402 ~~~y~~~l~~~~~~~~~~~g~p~ 424 (429)
T TIGR03594 402 PFSYKRYLENQFREAFGFEGTPI 424 (429)
T ss_pred CHHHHHHHHHHHHHhcCCCcceE
Confidence 66666677788888999999996
No 51
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=5.7e-21 Score=222.04 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=162.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~~ 557 (996)
.++++|+|+|++|+|||||+++|++... ..+..+|+|++.....+ .+++ ..+.||||||. +.|..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~--~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~ 284 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLI--ELGG--KTWRFVDTAGLRRRVKQASGHEYYAS 284 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEE--EECC--EEEEEEECCCccccccccchHHHHHH
Confidence 3578999999999999999999998765 36677888877533333 2333 46899999993 55666
Q ss_pred HHHH-hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChh-HHHHHHHhcCCCCCCCCCCCcEE
Q 001915 558 MRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 558 mr~r-ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~e-rv~~eL~~~gl~~e~~gg~ipvV 635 (996)
++.. ++..+|++|+|+|++++...+....+..+...++|+|+|+||||+...... .+..++.. .+... ..++++
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~~~---~~~~~~ 360 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-ELAQV---PWAPRV 360 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-hcccC---CCCCEE
Confidence 6554 568999999999999999999998888888889999999999999643221 12222222 11111 236899
Q ss_pred EeccCCCCChhhHHHHHHHHHHHHh---------------hhcCCCCCCc---ceEEEEeeecCCCcEEEEEEEcCEecc
Q 001915 636 QISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAK---GTVIEAGLHKSKGPVATFILQNGTLKK 697 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~lael~e---------------lk~~p~r~~~---g~Vies~~dkgrG~Vat~lV~~GtLk~ 697 (996)
++||++|.||+++|+.|..+.+... +...|..... ..+.++.+...+.|++.++ .+..+..
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~-~~~~~~~ 439 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRILFATQASTRPPTFVLF-TTGFLEA 439 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEE-eCCCCCh
Confidence 9999999999999999986654111 1122222223 3456777778888888887 4456777
Q ss_pred CcEEEEcccceeEeeccccccC
Q 001915 698 GDVVVCGEAFGKIIGLNGVPIA 719 (996)
Q Consensus 698 GD~VviG~~~gkV~Gl~g~P~a 719 (996)
.+..++.+.+++.+||.|+|+.
T Consensus 440 ~y~~~l~~~~r~~~~~~g~pi~ 461 (472)
T PRK03003 440 GYRRFLERRLRETFGFEGSPIR 461 (472)
T ss_pred HHHHHHHHHHHHHcCCCcceEE
Confidence 7777788888889999999964
No 52
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.3e-21 Score=210.63 Aligned_cols=230 Identities=27% Similarity=0.357 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeceEEEEEe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVP 536 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~---------------------------------se~gGiTqdI~a~~V~i~ 536 (996)
...+++.+|++|.|||||+.+|++..... ....|||+|+.+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 45689999999999999999997432211 12358999986655443
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhHHH
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVM 615 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~erv~ 615 (996)
..++|.+.|||||+.|+.+|..|++.||++|++||+..|+.+||+.|--.+...++. +|+++|||||.+++.+.+.
T Consensus 84 ---~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 ---EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ---ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 457899999999999999999999999999999999999999999999888889987 8999999999988765543
Q ss_pred HHHHhcCCCCCCCC-CCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCC
Q 001915 616 QELSSIGLMPEDWG-GDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEAGLHKSK 682 (996)
Q Consensus 616 ~eL~~~gl~~e~~g-g~ipvVeISAktGeGIdE------------L~eaIl~lael~elk~~p~r~~~g~Vies~~dkgr 682 (996)
+....+.-....++ ....+||+||+.|+||-. |++.|-.+.-.......+-|.+..+|.... ...|
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~-~dfR 239 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPN-LDFR 239 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCC-Cccc
Confidence 33222111111111 235799999999999854 444332111001111223333333333322 1234
Q ss_pred CcEEEEEEEcCEeccCcEEEEccc-----ceeEeecccc---ccCCCeEEEe
Q 001915 683 GPVATFILQNGTLKKGDVVVCGEA-----FGKIIGLNGV---PIAGDEFEVV 726 (996)
Q Consensus 683 G~Vat~lV~~GtLk~GD~VviG~~-----~gkV~Gl~g~---P~aGd~~~vv 726 (996)
|. .+.+..|++++||.|++-++ ..+|..|+|- -.+|+.+.++
T Consensus 240 Gy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~ 289 (431)
T COG2895 240 GY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLV 289 (431)
T ss_pred cc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEE
Confidence 54 57789999999999988663 2235556542 3567766443
No 53
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.85 E-value=4.2e-20 Score=225.00 Aligned_cols=302 Identities=27% Similarity=0.345 Sum_probs=199.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
.+..+|+|+||+|||||||+++|+..... .....|+|.+.....+.+.+++.++.++|+|||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45679999999999999999999743211 11234566665554444444556778999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC----hhHHHHHHHh-------c
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----PERVMQELSS-------I 621 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~----~erv~~eL~~-------~ 621 (996)
..|.....++++.+|++|+|+|+.+|+..|+..+++.+...++|.|+++||+|+..++ .+.+...+.. .
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~ 177 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKL 177 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888899999999999986433 2222111111 0
Q ss_pred --CCCCC----CC---CCCCcEEEeccCCCCChh----------------------------------hHHHHHHHHHHH
Q 001915 622 --GLMPE----DW---GGDIPMVQISALKGEKVD----------------------------------DLLETIMLVAEL 658 (996)
Q Consensus 622 --gl~~e----~~---gg~ipvVeISAktGeGId----------------------------------EL~eaIl~lael 658 (996)
.+..+ .| ..+-.+++.||+.+.++. .|++.|.....-
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPs 257 (731)
T PRK07560 178 IKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPN 257 (731)
T ss_pred HHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCC
Confidence 00001 11 112346788999988775 455555442211
Q ss_pred Hh-----------------------hhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--cee---E
Q 001915 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGK---I 710 (996)
Q Consensus 659 ~e-----------------------lk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gk---V 710 (996)
.. +..+++.++.+.|++...++++|.+++++|.+|+|++||.|+.-.. ..+ +
T Consensus 258 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i 337 (731)
T PRK07560 258 PIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQV 337 (731)
T ss_pred hhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEehee
Confidence 10 0113344667788898889999999999999999999999975432 112 2
Q ss_pred e---ecccc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEE
Q 001915 711 I---GLNGV----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIM 783 (996)
Q Consensus 711 ~---Gl~g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIi 783 (996)
. |-+.. -.|||.+.+.. .+.+ ..|+.-.+.... ..+. .......+.+.+.|
T Consensus 338 ~~~~g~~~~~v~~a~AGdIv~i~g-l~~~------------------~~GdtL~~~~~~-~~~~--~~~~~p~Pv~~~aI 395 (731)
T PRK07560 338 GIYMGPEREEVEEIPAGNIAAVTG-LKDA------------------RAGETVVSVEDM-TPFE--SLKHISEPVVTVAI 395 (731)
T ss_pred hhhhcCCCceeeeECCCCEEEEEc-cccc------------------ccCCEEeCCCcc-cccc--ccccCCCCeEEEEE
Confidence 1 11112 25888876643 1110 111110000000 0000 00012246889999
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
.+...+..+.|.++|.+|..++..++|..
T Consensus 396 ~p~~~~d~~kL~~aL~~L~~eDPsl~v~~ 424 (731)
T PRK07560 396 EAKNPKDLPKLIEVLRQLAKEDPTLVVKI 424 (731)
T ss_pred EECCHHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 99999999999999999998888887754
No 54
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=226.69 Aligned_cols=222 Identities=26% Similarity=0.343 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeceEEEEEe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVP 536 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~---------------------------------se~gGiTqdI~a~~V~i~ 536 (996)
...+|+|+||+|||||||+++|+...... ....|+|++.++..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~--- 99 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF--- 99 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE---
Confidence 34679999999999999999998532111 112456666554333
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCC-CEEEEecccCCCCCChhH--
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER-- 613 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~er-- 613 (996)
...+..++|+|||||+.|...+..++..+|++|||+|+.+++++|+.+++..+...++ ++||++||+|+..++.++
T Consensus 100 -~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 100 -ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred -ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHH
Confidence 2345679999999999999888889999999999999999999999999998888875 588999999997544332
Q ss_pred -HHHHHH----hcCCCCCCCCCCCcEEEeccCCCCChhh------------HHHHHHHHHHHHhhh-cCCCCCCcceEEE
Q 001915 614 -VMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELK-ANPHRNAKGTVIE 675 (996)
Q Consensus 614 -v~~eL~----~~gl~~e~~gg~ipvVeISAktGeGIdE------------L~eaIl~lael~elk-~~p~r~~~g~Vie 675 (996)
+..++. ..++ .+++++++||++|.|+++ |++.|..+ ... ...+.++...|..
T Consensus 179 ~i~~~i~~~~~~~~~------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~----~~~~~~~~~p~r~~i~~ 248 (632)
T PRK05506 179 EIVADYRAFAAKLGL------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV----EIASDRNLKDFRFPVQY 248 (632)
T ss_pred HHHHHHHHHHHHcCC------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC----CCCCCcCCCCceeeEEE
Confidence 223332 2222 246899999999999985 33332211 111 0112334444433
Q ss_pred EeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeecc--c----cccCCCeEEE
Q 001915 676 AGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGLN--G----VPIAGDEFEV 725 (996)
Q Consensus 676 s~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl~--g----~P~aGd~~~v 725 (996)
+......+..+.|.|.+|+|++||.+++++. ..+|.++. + .-.+||.+.+
T Consensus 249 v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i 306 (632)
T PRK05506 249 VNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTL 306 (632)
T ss_pred EEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEE
Confidence 3221111122679999999999999998763 34455542 1 1257776644
No 55
>PRK12740 elongation factor G; Reviewed
Probab=99.85 E-value=9.4e-20 Score=219.85 Aligned_cols=289 Identities=29% Similarity=0.361 Sum_probs=203.2
Q ss_pred EcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH
Q 001915 497 MGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM 558 (996)
Q Consensus 497 VGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m 558 (996)
+||+|||||||+++|...... .....|+|.+.....+. ..++.++|||||||..|...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~----~~~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE----WKGHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE----ECCEEEEEEECCCcHHHHHH
Confidence 699999999999999632211 11235666655444433 24578999999999999999
Q ss_pred HHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC------------
Q 001915 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP------------ 625 (996)
Q Consensus 559 r~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~------------ 625 (996)
+..++..+|++|+|+|++++...++...+..+...++|+|+++||+|+...+..++..++... +...
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 999999999999999999999999999999988889999999999999876665555555431 1100
Q ss_pred -----------------------------------------------------------CC---------------CCCC
Q 001915 626 -----------------------------------------------------------ED---------------WGGD 631 (996)
Q Consensus 626 -----------------------------------------------------------e~---------------~gg~ 631 (996)
.. .+..
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 00 0123
Q ss_pred CcEEEeccCCCCChhhHHHHHHHHHHHHh---------------hhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEec
Q 001915 632 IPMVQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~lael~e---------------lk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk 696 (996)
+|++..||++|.|++.|++.|........ ...+++.+..+.|+++..++..|.++.++|.+|+|+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 57899999999999999999986533221 112455667788999998999999999999999999
Q ss_pred cCcEEEEcccc-----eeEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHH
Q 001915 697 KGDVVVCGEAF-----GKIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLAS 764 (996)
Q Consensus 697 ~GD~VviG~~~-----gkV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~ 764 (996)
+||.++++... ++++-+.+ . -.+||.+.+.. .+. ...++.-...... .
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~g-l~~------------------~~~Gdtl~~~~~~-~ 376 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAK-LKD------------------AATGDTLCDKGDP-I 376 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEec-cCc------------------cCCCCEEeCCCCc-c
Confidence 99999887532 23333322 2 25888876652 100 0111111000000 0
Q ss_pred HHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 765 AVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 765 ~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
.+. .. ....+.+.+.|.+...+..+.|.++|.+|..++..++|..
T Consensus 377 ~~~--~~-~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~ 421 (668)
T PRK12740 377 LLE--PM-EFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVER 421 (668)
T ss_pred ccC--CC-CCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEE
Confidence 000 00 1225789999999999999999999999998888887754
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.8e-20 Score=214.50 Aligned_cols=223 Identities=26% Similarity=0.348 Sum_probs=161.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~~ 557 (996)
..+++|+|+|++|+|||||+|+|++.. ...++.+|+|++.... .+.. .+..+.||||||+ +.|..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~--~~~~--~~~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT--PFER--DGQKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE--EEEE--CCeeEEEEECCCCCCCcchhhHHHHHHH
Confidence 457899999999999999999999765 4467778888874322 2222 3457999999995 33444
Q ss_pred HHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 558 mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
++. +++..+|++|+|+|++++...++...+.++...++|+|+++||||+.... ...+...+... +. +...++++
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~-l~---~~~~~~i~ 322 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR-LP---FLDYAPIV 322 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh-cc---cccCCCEE
Confidence 443 46789999999999999999999999999888899999999999996321 22233333321 11 12347999
Q ss_pred EeccCCCCChhhHHHHHHHHHHHH--------------h-hhcCCCCCCcce---EEEEeeecCCCcEEEEEEEcC-Eec
Q 001915 636 QISALKGEKVDDLLETIMLVAELQ--------------E-LKANPHRNAKGT---VIEAGLHKSKGPVATFILQNG-TLK 696 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~lael~--------------e-lk~~p~r~~~g~---Vies~~dkgrG~Vat~lV~~G-tLk 696 (996)
++||++|.||+++++.+..+.+.. + +...|.....|. +.++.+...+.+.+.+++++- .+.
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~ 402 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLP 402 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCC
Confidence 999999999999999987654311 1 112222223343 455666677888888888774 566
Q ss_pred cCcEEEEcccceeEeeccccccC
Q 001915 697 KGDVVVCGEAFGKIIGLNGVPIA 719 (996)
Q Consensus 697 ~GD~VviG~~~gkV~Gl~g~P~a 719 (996)
..+..++.+.+++.++|.|+|+.
T Consensus 403 ~~y~~~l~~~~r~~~~~~g~p~~ 425 (435)
T PRK00093 403 FSYKRYLENQLREAFDFEGTPIR 425 (435)
T ss_pred HHHHHHHHHHHHHHcCCCcccEE
Confidence 66677778888889999999963
No 57
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=1.8e-20 Score=191.54 Aligned_cols=165 Identities=24% Similarity=0.349 Sum_probs=121.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC-------CccccccCCceeeeceEEEEEe----------eCCccccEEEEeCCCccc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVP----------VDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s-------~va~se~gGiTqdI~a~~V~i~----------idgk~~~ItfIDTPGhE~ 554 (996)
.+|+++||+|||||||+++|+.. .......+|+|.++++..+.+. ..+..+.++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999862 2223446688988887766653 123467899999999988
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhc-CCCC-CCCCCC
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSI-GLMP-EDWGGD 631 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~-gl~~-e~~gg~ 631 (996)
|......++..+|++++|+|+.++...++.+.+..+...++|+++++||+|+.... .+....++.+. .... ......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 87777677889999999999999988888777776666789999999999996422 22222222210 0000 000124
Q ss_pred CcEEEeccCCCCChhhHHHHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~la 656 (996)
++++++||++|.|+++|+++|..+.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhcc
Confidence 7899999999999999999987553
No 58
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.2e-20 Score=203.96 Aligned_cols=206 Identities=34% Similarity=0.415 Sum_probs=150.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC----------------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~----------------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
...+|+-+||+|||||||.-+|.+.. .....+.|||+. +.++.+ +...+++--+|||||.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn--~aHveY--eTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITIN--AAHVEY--ETAKRHYAHTDCPGHA 128 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEe--eeeeee--eccccccccCCCCchH
Confidence 44589999999999999999986311 112345678754 444443 4566789999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC-h-----hHHHHHHHhcCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-P-----ERVMQELSSIGLMPE 626 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~-~-----erv~~eL~~~gl~~e 626 (996)
+|.+++..++.+-|++||||+++||.||||+|++.++++-+++ ++|.+||.|+.+.. . -++.+.|..+++.
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~-- 206 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD-- 206 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 9999999999999999999999999999999999999999998 88899999996422 1 2344556666663
Q ss_pred CCCCCCcEEEeccCC---CCChhhHHHHHHHHHH-HHhhhcCCCCCCc----ceEEEEeeecCCCcEEEEEEEcCEeccC
Q 001915 627 DWGGDIPMVQISALK---GEKVDDLLETIMLVAE-LQELKANPHRNAK----GTVIEAGLHKSKGPVATFILQNGTLKKG 698 (996)
Q Consensus 627 ~~gg~ipvVeISAkt---GeGIdEL~eaIl~lae-l~elk~~p~r~~~----g~Vies~~dkgrG~Vat~lV~~GtLk~G 698 (996)
|.++|+|.-||+. |.+-+-=.++|..+.+ +.++.+.|.|... ..|-.++...|||+|+++.+.+|+|++|
T Consensus 207 --Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 207 --GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred --CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 4568999988764 4221111223332222 2344455655443 3444566679999999999999999999
Q ss_pred cEEEE
Q 001915 699 DVVVC 703 (996)
Q Consensus 699 D~Vvi 703 (996)
|.+-+
T Consensus 285 ~e~ei 289 (449)
T KOG0460|consen 285 DEVEI 289 (449)
T ss_pred CEEEE
Confidence 98854
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.84 E-value=5.5e-20 Score=182.17 Aligned_cols=154 Identities=21% Similarity=0.332 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++++|||||+++|....+...... |...+.+.....+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 4799999999999999999998776544332 33334444445556777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHHc--CCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 572 VVAADDGIRPQTN-EAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak~~--~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
|+|+++....+.. +++..++.. ++|+|+++||+|+......+.. .+.. . ..++++++||++|.|++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~------~--~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKF-NFAE------K--HNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHH-HHHH------H--cCCeEEEEeCCCCCCHHHH
Confidence 9999886544433 333444433 7899999999998432111111 1111 1 1357999999999999999
Q ss_pred HHHHHHHH
Q 001915 649 LETIMLVA 656 (996)
Q Consensus 649 ~eaIl~la 656 (996)
|+.|....
T Consensus 150 ~~~l~~~~ 157 (161)
T cd04124 150 FQDAIKLA 157 (161)
T ss_pred HHHHHHHH
Confidence 99997543
No 60
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.4e-19 Score=217.45 Aligned_cols=299 Identities=27% Similarity=0.316 Sum_probs=204.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEeeCCccccEEEEeC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDT 549 (996)
..+..+|+|+||.|||||||.++|+...-.. ....|+|....+... .+.+ .+.|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~--~~~~-~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL--FWKG-DYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE--EEcC-ceEEEEeCC
Confidence 3467899999999999999999997321111 123467765444333 3333 478999999
Q ss_pred CCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc--------
Q 001915 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-------- 621 (996)
Q Consensus 550 PGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-------- 621 (996)
|||-+|+....+.++.+|++|+|||+.+|+++|+...|+++...++|.|+++||+|...++......++...
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 999999999999999999999999999999999999999999999999999999999766654333332211
Q ss_pred -----------C-----------CC---C---------------------------------C-CCC-------------
Q 001915 622 -----------G-----------LM---P---------------------------------E-DWG------------- 629 (996)
Q Consensus 622 -----------g-----------l~---~---------------------------------e-~~g------------- 629 (996)
+ +. . + .+.
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0 00 0 0 001
Q ss_pred -------CCCcEEEeccCCCCChhhHHHHHHHHHHHH-h-----------------hhcCCCCCCcceEEEEeeecCCCc
Q 001915 630 -------GDIPMVQISALKGEKVDDLLETIMLVAELQ-E-----------------LKANPHRNAKGTVIEAGLHKSKGP 684 (996)
Q Consensus 630 -------g~ipvVeISAktGeGIdEL~eaIl~lael~-e-----------------lk~~p~r~~~g~Vies~~dkgrG~ 684 (996)
...|+++-||.++.|++.|++++.....-. + .....+.+..+.++++..++..|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 146788889999999999999987654311 0 012335677788889888999999
Q ss_pred EEEEEEEcCEeccCcEEEEcccc-----eeEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhc
Q 001915 685 VATFILQNGTLKKGDVVVCGEAF-----GKIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKA 752 (996)
Q Consensus 685 Vat~lV~~GtLk~GD~VviG~~~-----gkV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~ 752 (996)
+..++|.+|+|+.|+.++.+..- +++.-+.+ . -.||+.+.++-- +.+ ..
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl-~~~------------------~t 384 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGL-KDA------------------TT 384 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcc-ccc------------------cc
Confidence 99999999999999998887543 22222111 0 135665544320 000 01
Q ss_pred CCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 753 GDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 753 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
++.-.+. + ..+.-.... +..+.+.+-|.+..-...+.+.++|.+|..++..+++..
T Consensus 385 GdTl~~~-~--~~v~~~~~~-~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~ 440 (697)
T COG0480 385 GDTLCDE-N--KPVILESME-FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVET 440 (697)
T ss_pred CCeeecC-C--Ccccccccc-CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEE
Confidence 1110000 0 000001111 124678899999999999999999999988887776655
No 61
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=3.6e-20 Score=189.59 Aligned_cols=163 Identities=33% Similarity=0.418 Sum_probs=118.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc--CCccccc--------------cCCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK--TKVAAAE--------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~--s~va~se--------------~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
..+|+|+|++|+|||||+++|+. ..+.... ..|+|.+. ....+.+..+.++|||||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~----~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILA----KNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhccccccc----ceeEEEECCEEEEEEECCCcHH
Confidence 35899999999999999999986 2222111 12334332 2222344567899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh----cCCCCCCCCC
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGG 630 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~----~gl~~e~~gg 630 (996)
|..++..+++.+|++++|||++++..+++..++..+...++|+++|+||+|+.....+....++.. .+...+. .
T Consensus 78 ~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 155 (194)
T cd01891 78 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ--L 155 (194)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc--C
Confidence 999999999999999999999998888887777777778999999999999976554444433332 2222121 2
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVAELQ 659 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~lael~ 659 (996)
.++++++||++|.|+.++-++...+.++.
T Consensus 156 ~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~ 184 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLF 184 (194)
T ss_pred ccCEEEeehhccccccccccchhhHHHHH
Confidence 46899999999999987755544444443
No 62
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=8.5e-20 Score=189.58 Aligned_cols=147 Identities=37% Similarity=0.462 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F 555 (996)
.+|+++||+|||||||+++|+.... ......|+|.+..... +..++..++|+|||||..|
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~----~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE----YETANRHYAHVDCPGHADY 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE----ecCCCeEEEEEECcCHHHH
Confidence 5799999999999999999975310 1112567777754333 3345668999999999999
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC--hh----HHHHHHHhcCCCCCCC
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PE----RVMQELSSIGLMPEDW 628 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~--~e----rv~~eL~~~gl~~e~~ 628 (996)
...+.+++..+|++++|+|+.+++.+++.+++..+...++| +|+++||+|+.... .+ ++...+...++..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--- 155 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--- 155 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc---
Confidence 99999999999999999999999999999999999999998 78999999995311 11 1223333334321
Q ss_pred CCCCcEEEeccCCCCChh
Q 001915 629 GGDIPMVQISALKGEKVD 646 (996)
Q Consensus 629 gg~ipvVeISAktGeGId 646 (996)
.+++++++||++|.|+.
T Consensus 156 -~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 -DNTPIVRGSALKALEGD 172 (195)
T ss_pred -cCCeEEEeeCccccCCC
Confidence 35899999999999864
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=1.4e-19 Score=177.05 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=108.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||++++.+..+..... .++.+ .+.....+++..+.+.+|||||++.|..++..++..+|++++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYD-PTIED--SYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccC-CCccc--eEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 589999999999999999999776543322 23322 122333456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHH----HHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 572 VVAADDGIRPQTN-EAIAH----AKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~----ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|||+++....+.. .++.. ....++|+|+++||+|+.... .+......... .++++++||++|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 150 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKL---------KIPYIETSAKDRL 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHc---------CCcEEEeeCCCCC
Confidence 9999985432221 11111 222478999999999996432 12222222211 2579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
||+++|++|...
T Consensus 151 ~i~~l~~~l~~~ 162 (164)
T cd04145 151 NVDKAFHDLVRV 162 (164)
T ss_pred CHHHHHHHHHHh
Confidence 999999998753
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=1.6e-19 Score=176.15 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++++|||||+++|++..+.....+ |.+..+....+.+++..+.++||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLP--TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 3799999999999999999998877654444 33333333344456777899999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHH----HHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 572 VVAADDGIRPQTNE-AIAH----AKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~----ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
|+|+++....+... ++.. ... .+.|+++|+||+|+... +.+......... .++++++||
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa 149 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK---------GFKYFETSA 149 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---------CCeEEEEEC
Confidence 99998753322221 1122 211 45899999999999521 222222222221 257999999
Q ss_pred CCCCChhhHHHHHHH
Q 001915 640 LKGEKVDDLLETIML 654 (996)
Q Consensus 640 ktGeGIdEL~eaIl~ 654 (996)
++|.||+++|++|+.
T Consensus 150 ~~~~gi~~l~~~l~~ 164 (168)
T cd04119 150 CTGEGVNEMFQTLFS 164 (168)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999874
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.83 E-value=1.3e-19 Score=175.78 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||+++|.+..+.....+. +.+ .+.....+++..+.+.+|||||++.|..++..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc-chh--eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 57999999999999999999987765433332 211 233344456666778999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHH----HHcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE-AIAHA----KAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~a----k~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+... .+..+ ...++|+++|+||+|+.... ........... .++++++||++|.|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY---------GIPYIETSAKTRQG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh---------CCeEEEecCCCCCC
Confidence 99998743322221 12222 23478999999999996422 12222222221 25799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 150 i~~l~~~l~~ 159 (162)
T cd04138 150 VEEAFYTLVR 159 (162)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 66
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.6e-20 Score=210.92 Aligned_cols=232 Identities=24% Similarity=0.349 Sum_probs=170.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEeeC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPVD 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~id 538 (996)
....++++||+|+|||||+.+|+..-- ...+..|+|.++....++
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe---- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE---- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe----
Confidence 446789999999999999999853211 012356888887665554
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEecccCCCCCC
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-------v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~ 610 (996)
.....++|+|+|||..|...+..++..+|++|||+|++-+ ...|++|+...++..|+. +||++||+|+.+|+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 4567899999999999999999999999999999999863 467999999999999987 99999999999999
Q ss_pred hhHHHHHHHhcCCCC-CCC---CCCCcEEEeccCCCCChhh------HHHHH---HHHHHHHhhhc---CCCCCCcceEE
Q 001915 611 PERVMQELSSIGLMP-EDW---GGDIPMVQISALKGEKVDD------LLETI---MLVAELQELKA---NPHRNAKGTVI 674 (996)
Q Consensus 611 ~erv~~eL~~~gl~~-e~~---gg~ipvVeISAktGeGIdE------L~eaI---l~lael~elk~---~p~r~~~g~Vi 674 (996)
.+++...-...+... +.. ..++.|+|||+++|+|+.. |.+|- .++..+..++. ..+.|+...|.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIs 411 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTIS 411 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhh
Confidence 877654333222111 111 1346899999999999754 34432 11122222222 23457777888
Q ss_pred EEeeecCCCcEEEEEEEcCEeccCcEEEEcccc--eeEeecc--c----cccCCCeEEE
Q 001915 675 EAGLHKSKGPVATFILQNGTLKKGDVVVCGEAF--GKIIGLN--G----VPIAGDEFEV 725 (996)
Q Consensus 675 es~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~--gkV~Gl~--g----~P~aGd~~~v 725 (996)
++....+.|..++|.|..|.|.+||.+++++.+ +.|.|+. . .-.|||.+.+
T Consensus 412 di~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl 470 (603)
T KOG0458|consen 412 DIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSL 470 (603)
T ss_pred heeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEE
Confidence 888888899999999999999999999998864 3466652 2 2357776643
No 67
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=1.3e-19 Score=177.16 Aligned_cols=152 Identities=23% Similarity=0.287 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+|+|.+|+|||||++++....+.....+ ++. ..+...+.+++..+.+.||||||++.|..++..+++.+|+++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIE--DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-chh--hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 5899999999999999999997766543332 222 2333444556767789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....... .++..+. ..++|+|+++||+|+..... ......+.. .++ .+++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~~ 150 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR------QWG--CPFYETSAKSKIN 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH------HcC--CeEEEecCCCCCC
Confidence 9999874332221 2222222 23689999999999854221 111112221 122 6899999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 151 v~~l~~~l~~ 160 (163)
T cd04136 151 VDEVFADLVR 160 (163)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=1.2e-19 Score=220.39 Aligned_cols=221 Identities=21% Similarity=0.292 Sum_probs=160.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGAM 558 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~~m 558 (996)
..++|+|+|++|+|||||+|+|++.... ..+.+|+|++..... +.+++ ..+.||||||+ +.|..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~--~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEI--VEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeE--EEECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 4589999999999999999999987753 567788887753332 33343 46889999994 345555
Q ss_pred HHH-hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 559 RAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 559 r~r-ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
+.. ++..+|++|+|+|++++...++...+..+...++|+|+|+||||+..... +.+...+.. .+.. ....++++
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~---~~~~~ii~ 600 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT-EFDR---VTWARRVN 600 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH-hccC---CCCCCEEE
Confidence 544 46899999999999999999999888888888999999999999964322 222222222 1111 12368899
Q ss_pred eccCCCCChhhHHHHHHHHHHHH--------------h-hhcCCCCCC---cceEEEEeeecCCCcEEEEEEEcCEeccC
Q 001915 637 ISALKGEKVDDLLETIMLVAELQ--------------E-LKANPHRNA---KGTVIEAGLHKSKGPVATFILQNGTLKKG 698 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~lael~--------------e-lk~~p~r~~---~g~Vies~~dkgrG~Vat~lV~~GtLk~G 698 (996)
+||++|.|+++|++.+....+.. . +...|.... ...++++.+...+.|++.++ .+..+...
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f-~~~~~~~~ 679 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIF-TTGFLEHG 679 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEE-cCCCCChH
Confidence 99999999999999987655410 1 112222222 23466777788899998888 44567777
Q ss_pred cEEEEcccceeEeeccccccC
Q 001915 699 DVVVCGEAFGKIIGLNGVPIA 719 (996)
Q Consensus 699 D~VviG~~~gkV~Gl~g~P~a 719 (996)
+..++.+.+++.+||.|+|+.
T Consensus 680 y~r~l~~~~r~~~~~~g~pi~ 700 (712)
T PRK09518 680 YRRFLERSLREEFGFEGSPIQ 700 (712)
T ss_pred HHHHHHHHHHHHcCCccceEE
Confidence 777788888889999999974
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.82 E-value=1.8e-19 Score=176.89 Aligned_cols=153 Identities=24% Similarity=0.315 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++|+|||||+++|.+..+.....+. +.+ .+.....+++..+.+.+|||||++.|..++..++..+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT-IED--SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-hhh--hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 37999999999999999999987765433332 222 233344456667789999999999999999999999999999
Q ss_pred EEecCCCCChhHHHH-HHHH----HHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNEA-IAHA----KAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~-I~~a----k~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++......... +..+ ...++|+|+|+||+|+..... ......+... + .++++++||++|.|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~ 149 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ------W--GCPFLETSAKERVN 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH------c--CCEEEEeecCCCCC
Confidence 999987433222111 1111 223689999999999964221 1112222221 1 26799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
++++|++|+..
T Consensus 150 i~~l~~~l~~~ 160 (164)
T smart00173 150 VDEAFYDLVRE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 70
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=3.3e-20 Score=211.05 Aligned_cols=224 Identities=20% Similarity=0.252 Sum_probs=163.4
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhcccCC
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~~R 490 (996)
.+++++|.+.++....++.+.|+.. .+.+...|||+.- .+ ++.....+......+...+ ..++...+.+.+.+.
T Consensus 143 r~A~~~l~G~ls~~i~~lr~~li~~--~a~vEa~IDfpee-di-~~~~~~~i~~~l~~~~~~l--~~ll~~~~~g~ilr~ 216 (454)
T COG0486 143 RIALRQLQGALSQLINELREALLEL--LAQVEANIDFPEE-DI-EELVLEKIREKLEELIAEL--DELLATAKQGKILRE 216 (454)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHH--HHHheEeCCCCcc-cc-cchhHHHHHHHHHHHHHHH--HHHHHhhhhhhhhhc
Confidence 4788999999999999999999887 5667777888761 11 0000000000111111111 334455667788899
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC-------ccchHHHHHHh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-------HEAFGAMRARG 562 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG-------hE~F~~mr~rg 562 (996)
+.+|+|+|.||+|||||||+|.+...+ +++.+|+|+|+ ++..++-+++.+.++||+| .|+....|++.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDv----iee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDV----IEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccce----EEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 999999999999999999999977655 89999999996 4444455678999999999 35566667766
Q ss_pred h-hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 563 A-RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 563 a-~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
. ..||++++|+|++++...++...+. +...+.|+++++||+|+......... .+....+++.+||++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~~~~~~~~i~iSa~t 360 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------KLANGDAIISISAKT 360 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------hccCCCceEEEEecC
Confidence 5 8999999999999987777777766 44567899999999999653221100 122345799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|+|++.|.++|....
T Consensus 361 ~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 361 GEGLDALREAIKQLF 375 (454)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999997654
No 71
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=3.4e-19 Score=183.34 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=113.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
++|+|+|.+++|||||+++|.+..+.....+ |.+..++...+.++ +..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~--t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKA--TIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 4799999999999999999998776544433 44443443344455 66788999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHH-HHHH-------HcCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 571 IVVAADDGIRPQTNEAI-AHAK-------AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E~I-~~ak-------~~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
+|||+++....+....+ ..+. ..++|+|+|+||+|+.. ...+++.......+ ..+++++||
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa 150 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG--------FIGWFETSA 150 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC--------CceEEEEeC
Confidence 99999885433322211 1111 24689999999999952 23334433333332 147999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||+++|++|....
T Consensus 151 k~~~~v~e~f~~l~~~l 167 (201)
T cd04107 151 KEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 72
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=3.7e-19 Score=173.98 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=109.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC--CccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id--gk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
.+|+++|++++|||||+++|....+.....+.++.+ +....+.+. +....++||||||++.|..++..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVD--FLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEE--EEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 379999999999999999999877654444433333 333333334 5567899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH-HHHH--HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQTNEAI-AHAK--AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I-~~ak--~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
++|+|+++....+....+ ..+. ..++|+|+|+||+|+.... .++........ .++++++||++|.
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 149 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL---------QLPLFRTSVKDDF 149 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 999999875433333222 2222 2478999999999985321 22222222222 2579999999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
|+++++++|..
T Consensus 150 ~v~~l~~~l~~ 160 (162)
T cd04106 150 NVTELFEYLAE 160 (162)
T ss_pred CHHHHHHHHHH
Confidence 99999999863
No 73
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=2.5e-19 Score=176.49 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=108.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||++++....+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIED--SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 5899999999999999999997665433322 2222 223344556667788999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHH----HHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~a----k~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|.++....+.. +++..+ ...++|+|+++||+|+..... ......+... + .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~ 150 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ------W--GCAFLETSAKAKIN 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH------h--CCEEEEeeCCCCCC
Confidence 9999874433221 122222 225789999999999964221 1111222211 1 25799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 151 v~~~~~~l~~ 160 (164)
T cd04175 151 VNEIFYDLVR 160 (164)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 74
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.82 E-value=7.2e-20 Score=166.50 Aligned_cols=83 Identities=46% Similarity=0.896 Sum_probs=80.0
Q ss_pred EeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCC
Q 001915 886 GSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGD 964 (996)
Q Consensus 886 G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD 964 (996)
|+|+|+++|+. +.|.||||+|++|.+++|+.++|+|+|+++|+|+|.||+|++++|.+|.+|+||||.|++|+||++||
T Consensus 1 g~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~d~~~Gd 80 (84)
T cd03692 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKVGD 80 (84)
T ss_pred CEEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcccCCCCC
Confidence 68999999985 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q 001915 965 IIEA 968 (996)
Q Consensus 965 ~ie~ 968 (996)
+|||
T Consensus 81 vi~~ 84 (84)
T cd03692 81 IIEA 84 (84)
T ss_pred EEEC
Confidence 9996
No 75
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.82 E-value=3.1e-19 Score=176.82 Aligned_cols=152 Identities=22% Similarity=0.204 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++++|||||+++|....+.....+ |.+..+....+.+++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc--ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999998776543332 33333333444556777889999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHH---HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE-AIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak---~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|||+++....+... ++..+. ..+.|+++|+||+|+.... .++........ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 151 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---------GLLFLECSAKTGEN 151 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 99999854433322 222222 2467899999999995432 23333222221 25799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
|+++|..+..
T Consensus 152 i~e~f~~l~~ 161 (166)
T cd04122 152 VEDAFLETAK 161 (166)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 76
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=2.3e-19 Score=179.47 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=108.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+++|++++|||||+++|.+..+.. ...|.+.....+. ++ .+.+.+|||||++.|..++..++..+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~t~g~~~~~~~--~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDT---ISPTLGFQIKTLE--YE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 4456899999999999999999998764421 1123333233332 33 467999999999999999999999999
Q ss_pred eEEEEEecCCCCChh-H----HHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQ-T----NEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Q-t----~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++++|+|+++..... . .+.+......++|+++++||+|+.+.. .+.+...+..... ....++++++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI----SSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc----CCCceEEEeccCCC
Confidence 999999998852211 1 122222223578999999999996533 2333333322111 11246899999999
Q ss_pred CCChhhHHHHHH
Q 001915 642 GEKVDDLLETIM 653 (996)
Q Consensus 642 GeGIdEL~eaIl 653 (996)
|.||+++|++|.
T Consensus 160 g~gi~~l~~~l~ 171 (173)
T cd04154 160 GEGLLQGIDWLV 171 (173)
T ss_pred CcCHHHHHHHHh
Confidence 999999999985
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.6e-19 Score=175.85 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++|+|+|++|+|||||+++|....+...... |....+....+.+++..+.+.||||||++.|..++...++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 47899999999999999999987766543332 3333333334445666678999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|||+++....+.. .++..+. ..++|+|+|+||+|+..... ..........+ ...++++||++|.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~~~ 152 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--------MLAVLETSAKESQ 152 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEEECCCCC
Confidence 99999985443332 2222222 34789999999999964321 22222222221 2468999999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
|++++|++|..
T Consensus 153 ~v~~~~~~l~~ 163 (165)
T cd01864 153 NVEEAFLLMAT 163 (165)
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 78
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=3.5e-19 Score=176.87 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=112.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++|+++|.+|+|||||+++|.+..+.....+.+ ++.+....+.+++..+.+.||||||++.|..++...++.+|++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--cceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 4789999999999999999999887765444333 33333333445666678999999999999999998999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|+|+++....+.. .++..+. ..++|+++++||+|+.+.. .++........ .++++++||++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 151 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---------GIKFLETSAKANI 151 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999875443322 2222222 2468999999999996422 22222222221 2579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|++++|++|...
T Consensus 152 ~v~~~~~~i~~~ 163 (167)
T cd01867 152 NVEEAFFTLAKD 163 (167)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 79
>PTZ00369 Ras-like protein; Provisional
Probab=99.81 E-value=2.9e-19 Score=182.15 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=111.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|+|+|++|+|||||++++.+..+.....+ |.+ ..+...+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDP--TIE-DSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCC--chh-hEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 457999999999999999999998776543332 222 12233444567778899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHH----HHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~a----k~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
|+|+|+++....... .++..+ ...++|+|+++||+|+.... ..+.......+ ..+++++||++
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~Sak~ 151 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF---------GIPFLETSAKQ 151 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh---------CCEEEEeeCCC
Confidence 999999985432221 222222 22478999999999985432 11222222211 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 152 ~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 152 RVNVDEAFYELVREI 166 (189)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997543
No 80
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=4e-19 Score=185.44 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
.|+++|..++|||||+.++....+...... |.+.+++...+.+++..+.+.||||+|++.|..++..+++.+|++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~--Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKS--GVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCC--cceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 589999999999999999998877654443 444455555556677778999999999999999999999999999999
Q ss_pred EecCCCCChhHHHH-HHHHH---HcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGIRPQTNEA-IAHAK---AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv~~Qt~E~-I~~ak---~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
||+++....+.... +..+. ..++|+|+|+||+|+..... .....++... + ..+.|+++||++|.||+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~-~------~~~~~~etSAktg~gV~ 152 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ-I------TGMRFCEASAKDNFNVD 152 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh-c------CCCEEEEecCCCCCCHH
Confidence 99998654443322 22222 24689999999999953211 1111222211 0 12579999999999999
Q ss_pred hHHHHHHHH
Q 001915 647 DLLETIMLV 655 (996)
Q Consensus 647 EL~eaIl~l 655 (996)
++|++|...
T Consensus 153 e~F~~l~~~ 161 (202)
T cd04120 153 EIFLKLVDD 161 (202)
T ss_pred HHHHHHHHH
Confidence 999999754
No 81
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=4e-19 Score=177.65 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=113.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||++++....+..... .|.++..+...+..++....+.+|||||++.|..++..++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV--ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 479999999999999999998766543332 355555555555556677889999999999999998889999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH--cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 572 VVAADDGIRPQTNE-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak~--~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
|+|+++....+... ++..+.. .++|+|+++||+|+..........++... ..++++++||++|.||+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK--------KNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH--------cCCEEEEEeCCCCCChHHH
Confidence 99999865443322 2222222 27999999999999633221111122211 2367999999999999999
Q ss_pred HHHHHHH
Q 001915 649 LETIMLV 655 (996)
Q Consensus 649 ~eaIl~l 655 (996)
|++|...
T Consensus 151 f~~l~~~ 157 (166)
T cd00877 151 FLWLARK 157 (166)
T ss_pred HHHHHHH
Confidence 9999754
No 82
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.81 E-value=9.8e-19 Score=212.81 Aligned_cols=303 Identities=24% Similarity=0.303 Sum_probs=191.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC---------------Ccc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT---------------KVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s---------------~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
.+..+|+|+||+|||||||+++|+.. .+. .....++|.+.........+++.++.++|||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999742 111 11235677766555544445677789999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChh----HHHHHHHhc-----CC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE----RVMQELSSI-----GL 623 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~e----rv~~eL~~~-----gl 623 (996)
..|......++..+|++|+|+|+.+++..++.++++.+...++|+|+++||+|+..++.. .+...+... .+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKL 176 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhh
Confidence 999999999999999999999999999999999999988889999999999999654322 222221110 00
Q ss_pred C----CCC----CC---CCCcEEEeccCCC------------CChhhH----------------------HHHHHHHHHH
Q 001915 624 M----PED----WG---GDIPMVQISALKG------------EKVDDL----------------------LETIMLVAEL 658 (996)
Q Consensus 624 ~----~e~----~g---g~ipvVeISAktG------------eGIdEL----------------------~eaIl~lael 658 (996)
. .+. |. .+......|++.+ ...++| ++.|.....-
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPs 256 (720)
T TIGR00490 177 IKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPS 256 (720)
T ss_pred hhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCC
Confidence 0 000 00 0011223344433 122222 3333221100
Q ss_pred Hh-----------------------hhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--c---eeE
Q 001915 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--F---GKI 710 (996)
Q Consensus 659 ~e-----------------------lk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~---gkV 710 (996)
.. +..+++.++.+.|+++..+++.|.+++++|.+|+|++||.+++-.. . +++
T Consensus 257 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l 336 (720)
T TIGR00490 257 PIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQV 336 (720)
T ss_pred hhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEE
Confidence 00 0012344567788998888999999999999999999999976431 1 222
Q ss_pred eecc---ccc----cCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEE
Q 001915 711 IGLN---GVP----IAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIM 783 (996)
Q Consensus 711 ~Gl~---g~P----~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIi 783 (996)
.-+. ..+ .|||.+.+.. .+.+ ..|+.-.+...-...+. ....+..+.+.+-|
T Consensus 337 ~~~~g~~~~~v~~a~aGdIv~i~g-l~~~------------------~~GdtL~~~~~~~~~~~--~~~~~~~Pv~~~~i 395 (720)
T TIGR00490 337 GVYMGPERVEVDEIPAGNIVAVIG-LKDA------------------VAGETICTTVENITPFE--SIKHISEPVVTVAI 395 (720)
T ss_pred EEeccCCccCccEECCCCEEEEEC-cccc------------------ccCceeecCCcccccCc--ccccCCCceEEEEE
Confidence 2221 122 5899886653 1111 01111100000000000 00112347899999
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
.+...+....|.++|.+|..++..+++.+
T Consensus 396 ~p~~~~d~~kL~~aL~~L~~eDPsl~v~~ 424 (720)
T TIGR00490 396 EAKNTKDLPKLIEVLRQVAKEDPTVHVEI 424 (720)
T ss_pred EECCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 99999999999999999999998888765
No 83
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=5.2e-19 Score=175.33 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=110.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+|+|||||+++|.+..+.....+ |.++.+....+..++....+.||||||++.|..++..+++.+|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 5899999999999999999998877544333 33333333333345566789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+. .+++..+.. .+.|+++|+||+|+..... ++..+..... .++++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 150 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------GFEFFEASAKENIN 150 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 999987432222 222233322 3678999999999954321 2222221211 24799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
+++||++|...
T Consensus 151 v~~l~~~l~~~ 161 (165)
T cd01865 151 VKQVFERLVDI 161 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=4.9e-19 Score=173.61 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++++|||||+++|....+.....+.++.+ +....+.+++....+.|||||||+.|..++..+++.+|++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--FGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee--EEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 479999999999999999999877765544444333 333344456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH----HHHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+.. +.+......++|+++++||+|+.... .+......... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 149 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN---------GLLFLETSALTGEN 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 9999985443332 22222333578999999999995421 22222222222 15799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
|+++|+++..
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd04113 150 VEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 85
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=3.1e-19 Score=175.69 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc----ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va----~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
+|+|+|++|+|||||+++|...... ......+|.++....+.+ + +..+.|||||||+.|..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV--G--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE--C--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 4899999999999999999754321 111223455544444332 2 4689999999999999999999999999
Q ss_pred EEEEEecCCCCCh-hHHHHHHHH----HHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRP-QTNEAIAHA----KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~-Qt~E~I~~a----k~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+++|+|+++.... .....+..+ ...++|+++++||+|+.... .+.+...+..... ......++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAE--EIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccc--cccCCceEEEEeeCCCC
Confidence 9999999874211 112222222 23579999999999986532 2333333322110 01112468999999999
Q ss_pred CChhhHHHHHH
Q 001915 643 EKVDDLLETIM 653 (996)
Q Consensus 643 eGIdEL~eaIl 653 (996)
.|+++++++|.
T Consensus 155 ~gv~e~~~~l~ 165 (167)
T cd04160 155 TGVREGIEWLV 165 (167)
T ss_pred cCHHHHHHHHh
Confidence 99999999985
No 86
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=5.7e-19 Score=177.95 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+|+|..|+|||||+.++....+.....+ |... .+...+.+++..+.++||||||++.|..++..++..+|++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDP--TIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCC--cccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 46899999999999999999998776533322 3221 22334455677788999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH----HHHHHH-HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 571 IVVAADDGIRPQTNE----AIAHAK-AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E----~I~~ak-~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|||+++....+... .+.... ..++|+|+|+||+|+.... .++........ .+++++|||++|
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~~~ 149 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---------NCPFFETSAALR 149 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---------CCEEEEEecCCC
Confidence 999999866555433 222222 2468999999999985321 12222111111 368999999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.||+++|++|+.
T Consensus 150 ~~v~~~f~~l~~ 161 (172)
T cd04141 150 HYIDDAFHGLVR 161 (172)
T ss_pred CCHHHHHHHHHH
Confidence 999999999974
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.81 E-value=9.2e-19 Score=171.06 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++++|||||+++|.+..+.....++++.+.....+. +++..+.+++|||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY--LEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEE--ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 3799999999999999999998888776666666655444443 45555789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHH-Hc--CCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIRPQTNE-AIAHAK-AA--GVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak-~~--~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+++....+... ++..+. .. ++|+++++||+|+.... .......+... ..++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~~v 150 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE--------LNAMFIETSAKAGHNV 150 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH--------hCCEEEEEeCCCCCCH
Confidence 99998854433322 222222 23 48999999999994321 11112222221 1267999999999999
Q ss_pred hhHHHHHHH
Q 001915 646 DDLLETIML 654 (996)
Q Consensus 646 dEL~eaIl~ 654 (996)
++++++|..
T Consensus 151 ~~l~~~i~~ 159 (161)
T cd01861 151 KELFRKIAS 159 (161)
T ss_pred HHHHHHHHH
Confidence 999999864
No 88
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=8.4e-19 Score=174.68 Aligned_cols=159 Identities=40% Similarity=0.607 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccc----------------cCCceeeeceEEEEEeeCCccccEEEEeCCCccchH
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE----------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se----------------~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~ 556 (996)
+|+|+|.+|+|||||+++|......... ..++|.+.....+. .....+.||||||+..|.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE----WPDRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe----eCCEEEEEEeCCCcHHHH
Confidence 4899999999999999999876554322 23455544333332 234679999999999999
Q ss_pred HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC-CChhHHHHHHHh----cCCCC-----C
Q 001915 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSS----IGLMP-----E 626 (996)
Q Consensus 557 ~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~-a~~erv~~eL~~----~gl~~-----e 626 (996)
..+..++..+|++++|+|+.++...+..+.+..+...+.|+++++||+|+.. ........++.. .+... .
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 9999999999999999999999888888888888888999999999999964 232333333322 22100 0
Q ss_pred CCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 627 DWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 627 ~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
......+++++||++|.|+++++++|...
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 01235789999999999999999998754
No 89
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.81 E-value=8.5e-19 Score=173.82 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=108.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||+++++...+.....+ |.. ..+......+.....+.||||||++.|..++..++..+|++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP--TIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--cch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence 5799999999999999999998776543332 222 1223333345566789999999999999999889999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH------cCCCEEEEecccCCCCC-ChhH-HHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGA-NPER-VMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~------~~IPIIVVINKiDL~~a-~~er-v~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+++...... ..++..+.. .++|+|+|+||+|+... .... ....+.. .+ .+++++|||++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~e~SA~~g 150 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT------EW--NCAFMETSAKTN 150 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH------Hh--CCcEEEeecCCC
Confidence 999988554332 222222322 46899999999999542 1111 1111111 11 357999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|+.+
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998754
No 90
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=8.9e-19 Score=177.98 Aligned_cols=161 Identities=24% Similarity=0.290 Sum_probs=111.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee-CCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.+|+++|++|+|||||+++|....+... . .|.++..+.+.+.. ++..+.+.||||||++.|..++..+++.+|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 78 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-V--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDG 78 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-C--CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCE
Confidence 357899999999999999999987665422 2 23334444444433 3356789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-----HHHHHHHHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-----~E~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|||+++...... .+........++|+++++||+|+... ..+.+...+....+.. ...++++++||++|
T Consensus 79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~ 155 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSA---STPWHVQPACAIIG 155 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCC---CCceEEEEeecccC
Confidence 999999987432211 12222233357999999999999643 2233322221111110 11356899999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||++++++|....
T Consensus 156 ~gi~~l~~~l~~~l 169 (183)
T cd04152 156 EGLQEGLEKLYEMI 169 (183)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997544
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.80 E-value=1.3e-18 Score=171.53 Aligned_cols=155 Identities=26% Similarity=0.298 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++|+|||||+++|.+..+.......++.+ +....+.+.+..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE--EEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 379999999999999999999887654443333322 223334456666788999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHH-HH-HHH------cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 572 VVAADDGIRPQTNEAI-AH-AKA------AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~I-~~-ak~------~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
|+|+++....+....+ .. +.. .++|+++++||+|+... ..+.....+...+ ..+++++||+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~ 150 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--------NIPYFETSAK 150 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--------CceEEEEECC
Confidence 9999875432222211 11 111 26899999999999631 2333333333322 3689999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.|+++++++|...+
T Consensus 151 ~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 151 EAINVEQAFETIARKA 166 (172)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997543
No 92
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=1.1e-18 Score=173.72 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=111.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++|+|||||+++|....+.....+.++.+. ....+.+++....+.||||||++.|..++..+++.+|++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999998776554444333333 23334445666789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+... ++..++. .++|+|+++||+|+... ..++........ ..+++++||++|.|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 153 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH---------GLIFMETSAKTASN 153 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 99999744333322 2222322 46899999999999632 223333322222 25799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
|+++|+++...
T Consensus 154 i~~~~~~~~~~ 164 (168)
T cd01866 154 VEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 93
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=1.2e-18 Score=172.13 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=111.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+|+|.+|+|||||+++|.+..+.....+.++.+ +....+.+++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD--FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 589999999999999999999877765444444433 333334446666789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++...... .+++..+.. .+.|+|+++||+|+.... .++........ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 151 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---------GIPFLETSAKNATN 151 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCcC
Confidence 999987432222 222222222 468999999999985432 12222222211 36899999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
|+++|++|...
T Consensus 152 v~~~~~~i~~~ 162 (166)
T cd01869 152 VEQAFMTMARE 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 94
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=9.3e-19 Score=179.45 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=112.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|..++|||||+.++....+.....+ |... .+...+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIP--TVFD-NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCC--ceEe-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 347899999999999999999998777544333 3332 2333345677788999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH--HHHHHH--HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCC---------CCCCCCCcEEE
Q 001915 570 VIVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQ 636 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E--~I~~ak--~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~---------e~~gg~ipvVe 636 (996)
|+|||+++....+... ++..+. ..++|+|+|+||+||.+.... ...+....... ....+..++++
T Consensus 79 ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~--~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 79 IICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT--LKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh--HHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999854433332 122222 247899999999999543210 01111100000 00012357999
Q ss_pred eccCCCCChhhHHHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~la 656 (996)
+||++|.||+++|++|....
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998543
No 95
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.80 E-value=9.6e-19 Score=173.36 Aligned_cols=154 Identities=24% Similarity=0.271 Sum_probs=112.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+++|.+++|||||+++|....+.....+ |.+..+....+.+++..+.+.||||||++.|..++..+++.+|++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 36899999999999999999998776544333 3333333444556777788999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH-----HHHHHH---HcCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 571 IVVAADDGIRPQTNE-----AIAHAK---AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E-----~I~~ak---~~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|+++....+... .+.... ..++|+++++||+|+... ..+++.+....++ ..+++++||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~ 154 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG--------DYPYFETSAK 154 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC--------CCeEEEEECC
Confidence 999999754332221 222211 135899999999998532 2233333333322 2479999999
Q ss_pred CCCChhhHHHHHHH
Q 001915 641 KGEKVDDLLETIML 654 (996)
Q Consensus 641 tGeGIdEL~eaIl~ 654 (996)
+|.|++++|++++.
T Consensus 155 ~~~~v~~~~~~~~~ 168 (170)
T cd04116 155 DATNVAAAFEEAVR 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=197.23 Aligned_cols=151 Identities=25% Similarity=0.430 Sum_probs=124.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-----hHHH----HHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-----FGAM----RAR 561 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-----F~~m----r~r 561 (996)
|+|+|+|.||+|||||+|+|.+.+.+ +.+.+|+|+|.-+..... .+..+.++||+|.+. |... ...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~----~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW----LGREFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE----cCceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 89999999999999999999998876 788999999976655543 335699999999542 3332 224
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
.+..||++|||+|+..|+++++.+..++++..++|+|+|+||+|-. ..+....++..+|+ -.++++||..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~--------g~~~~ISA~H 149 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGF--------GEPVPISAEH 149 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCC--------CCceEeehhh
Confidence 5588999999999999999999999999998889999999999974 34445555666654 3689999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.|+++|+++++...
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999998553
No 97
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=6.9e-19 Score=182.61 Aligned_cols=161 Identities=29% Similarity=0.395 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc---cccccCCceeeeceEEEEEe-----------------------eC--C----
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQVP-----------------------VD--G---- 539 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v---a~se~gGiTqdI~a~~V~i~-----------------------id--g---- 539 (996)
.+|+|+||.|||||||+.+|..... ......++|...++...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999975421 22233455555554443221 00 0
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-CChhHHHHHHHHHHcCC-CEEEEecccCCCCCC-hhHHHH
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQ 616 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-v~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~-~erv~~ 616 (996)
....++|||||||+.|...+..++..+|++++|+|++++ ...++.+.+..+...++ |+|+++||+|+.... .....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 126799999999999999999999999999999999984 67788888887776676 699999999996421 222223
Q ss_pred HHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 617 eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
.+...- .......++++++||++|+||++|+++|..
T Consensus 161 ~i~~~~--~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHH--hccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 332210 000112468999999999999999999863
No 98
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=8.9e-19 Score=177.23 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=110.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|..++|||||+.+|....+.....+ |... .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceee-eeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 5799999999999999999998777544333 3322 223344456667889999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--HHHHHH--HcCCCEEEEecccCCCCCChhHHHHHHHhcC---CC------CCCCCCCCcEEEec
Q 001915 572 VVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIG---LM------PEDWGGDIPMVQIS 638 (996)
Q Consensus 572 VVDAsdgv~~Qt~E--~I~~ak--~~~IPIIVVINKiDL~~a~~erv~~eL~~~g---l~------~e~~gg~ipvVeIS 638 (996)
|||+++....+... ++..+. ..++|+|+|+||+|+.... ...+.+.... .. ...-.+...|++||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 156 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLARDLKAVKYVECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 99999854443321 222232 2368999999999985421 1111111100 00 00001236799999
Q ss_pred cCCCCChhhHHHHHHHH
Q 001915 639 ALKGEKVDDLLETIMLV 655 (996)
Q Consensus 639 AktGeGIdEL~eaIl~l 655 (996)
|++|.||+++|+.++..
T Consensus 157 A~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 157 ALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998764
No 99
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.4e-18 Score=177.39 Aligned_cols=152 Identities=24% Similarity=0.239 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+|+|.+|+|||||+++|....+.....+.+ .. .+.....+++..+.+.||||||++.|..++..+++.+|++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~--~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--ED-SYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch--Hh-hEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence 48999999999999999999877654333222 21 2223334566667899999999999999999999999999999
Q ss_pred EecCCCCChhHH-HHHHHHHH------cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 573 VAADDGIRPQTN-EAIAHAKA------AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 573 VDAsdgv~~Qt~-E~I~~ak~------~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
||+++....... .++..+.. .++|+|+|+||+|+.... .... ..+... + .++++++||++|
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~~~~------~--~~~~~e~SAk~~ 148 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AALARR------L--GCEFIEASAKTN 148 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHHHHH------h--CCEEEEecCCCC
Confidence 999885433322 22222221 468999999999995321 1111 122111 1 257999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|+...
T Consensus 149 ~~v~~l~~~l~~~l 162 (190)
T cd04144 149 VNVERAFYTLVRAL 162 (190)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998543
No 100
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=2.6e-19 Score=186.41 Aligned_cols=146 Identities=28% Similarity=0.434 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-c------------------------------cccCCceeeeceEEEEEeeCCcc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA-A------------------------------AEAGGITQGIGAYKVQVPVDGKL 541 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va-~------------------------------se~gGiTqdI~a~~V~i~idgk~ 541 (996)
+|+|+||+|||||||+++|+..... . ....|+|++.....+. ..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~----~~~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS----TPK 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe----cCC
Confidence 4899999999999999999743211 1 1126778776554432 345
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChh---HHHHH
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE---RVMQE 617 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~e---rv~~e 617 (996)
..++|||||||+.|...+..++..+|++|+|+|++++...++.+.+..+...+.| +|+|+||+|+.....+ .+..+
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 6899999999999988888889999999999999999988888888877777765 7889999999754432 22223
Q ss_pred HH----hcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 618 LS----SIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 618 L~----~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+. .+++ ...+++++||++|.|+++.
T Consensus 157 ~~~~~~~~~~------~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGI------EDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCC------CCceEEEEeCCCCCCCccC
Confidence 32 2221 1357999999999999864
No 101
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.80 E-value=8.1e-19 Score=174.20 Aligned_cols=151 Identities=24% Similarity=0.300 Sum_probs=107.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEE
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVV 573 (996)
|+|+|.+++|||||+++|.+..+.....+.+. ..+...+.+++..+.+.||||||++.|..++..++..+|++||||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF---ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE---eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence 58999999999999999998777544333222 123334445666778999999999999999999999999999999
Q ss_pred ecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCCCCCCCCCcE
Q 001915 574 AADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 574 DAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~e~~gg~ipv 634 (996)
|+++....+.. .++..+.. .++|+|+|+||+|+..... ++........ +..++
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~ 149 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI--------GAVKY 149 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc--------CCcEE
Confidence 99875333322 12233332 3789999999999954110 1111111111 12479
Q ss_pred EEeccCCCCChhhHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~l 655 (996)
++|||++|.||+++|+.|...
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999998754
No 102
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.80 E-value=8.3e-19 Score=179.03 Aligned_cols=154 Identities=20% Similarity=0.231 Sum_probs=113.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|+.++|||||+.++....+.....+ |.+. .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~--Ti~~-~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFD-NFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ccee-eeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 4799999999999999999998877544433 4332 233445567778899999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCC------------hhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN------------PERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 572 VVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~------------~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
|||+++....+.. .++..++. .++|+|+|+||+|+.+.. ..+....+... + +..+|+
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~------~-~~~~~~ 151 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ------I-GAAAYI 151 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH------c-CCCEEE
Confidence 9999986554443 23443432 478999999999995421 01111122211 1 113699
Q ss_pred EeccCCCCChhhHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~l 655 (996)
+|||++|.||+++|+.+...
T Consensus 152 E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ECCCCcccCHHHHHHHHHHH
Confidence 99999999999999999864
No 103
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.80 E-value=6.8e-19 Score=172.96 Aligned_cols=152 Identities=20% Similarity=0.274 Sum_probs=109.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||++++....+.....+ +.. ..+...+.+++....+.||||||++.|..++..++..+|++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDP-TIE--DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-chh--heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 5899999999999999999998776543332 222 2344455556666789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCCh-h-HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGANP-E-RVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~~-e-rv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+. .+++..+.. .++|+++|+||+|+..... . .....+.. .+ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 150 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE------EW--GCPFMETSAKSKTM 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH------Hh--CCEEEEecCCCCCC
Confidence 999998543222 222222222 4789999999999853211 1 11222221 11 25799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 151 v~~l~~~l~~ 160 (163)
T cd04176 151 VNELFAEIVR 160 (163)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 104
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=1.7e-18 Score=174.67 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.+|+|+|.+++|||||+++|.+..+.....+.+..+ +.. .+... +..+.+.||||||++.|..++..++..+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~--~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN--YVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee--eEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 379999999999999999999887764443322222 221 22233 55678999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH--HHHHHH--HcCCCEEEEecccCCCCCC-------hhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 571 IVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGAN-------PERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E--~I~~ak--~~~IPIIVVINKiDL~~a~-------~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
+|+|+++....+... ++.... ..++|+|+|+||+|+.... .++..+.....+ ..+++++||
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~e~Sa 149 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG--------AFAYLECSA 149 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC--------CcEEEEccC
Confidence 999999854443322 222222 2478999999999995422 222222222222 127999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVAEL 658 (996)
Q Consensus 640 ktGeGIdEL~eaIl~lael 658 (996)
++|.||+++|+.+...+..
T Consensus 150 ~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 150 KTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 105
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=4.9e-19 Score=172.80 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|.+++|||||+++|......... ...|.+.....+ ......+++|||||++.|..++..++..+|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-IVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-ecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 4899999999999999999876432111 112333222222 23457899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHHH------HHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 573 VAADDGIRPQ-TNEAIAHA------KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 573 VDAsdgv~~Q-t~E~I~~a------k~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+++..... ....+..+ ...++|+++++||+|+..... .++...+....+ .....+++++||++|.|
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~----~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI----KDKPWHIFASNALTGEG 151 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc----cCceEEEEEeeCCCCCc
Confidence 9999854321 11122211 124799999999999965432 222222211111 11234689999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999853
No 106
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=1.9e-18 Score=168.70 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++|+|||||+++|.+..+.....+.++.+ +....+.+++....+.+|||||++.|..++..++..+|++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVD--FKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE--EEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 479999999999999999999887754444444433 333344455666789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|||+++....+... ++..+.. .++|+++++||+|+... +.+......... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 149 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH---------GLPFFETSAKTNTN 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 99998854433322 2222222 46899999999998542 223333332222 25699999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
+++++++|...
T Consensus 150 i~~l~~~i~~~ 160 (164)
T smart00175 150 VEEAFEELARE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 107
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=1.2e-18 Score=178.62 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=113.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|+++|+.++|||||+.++....+.....+ |... .+...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~p--T~~~-~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP--TVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCC--ceee-eeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 346899999999999999999998777544333 3332 2334555677888999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCCC
Q 001915 570 VIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~gg 630 (996)
|||||+++....+.. .++..+.. .+.|+|+|+||+||... ..++..+....++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-------- 152 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG-------- 152 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------
Confidence 999999986544432 22233322 36899999999998531 1111121111221
Q ss_pred CCcEEEeccCCCCC-hhhHHHHHHHH
Q 001915 631 DIPMVQISALKGEK-VDDLLETIMLV 655 (996)
Q Consensus 631 ~ipvVeISAktGeG-IdEL~eaIl~l 655 (996)
.++|++|||++|.| |+++|+.+++.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 24799999999998 99999988764
No 108
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.80 E-value=1.5e-18 Score=173.53 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC----------CccccEEEEeCCCccchHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----------GKLQPCVFLDTPGHEAFGAMRA 560 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id----------gk~~~ItfIDTPGhE~F~~mr~ 560 (996)
-.+|+++|.+++|||||+++|....+.....+ |.+..+....+.+. +....+.||||||++.|..++.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 36899999999999999999998776544333 33333333223222 3457899999999999999999
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHH-HHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNE-AIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~i 632 (996)
.+++.+|++|+|+|+++....+... ++..+.. .+.|+++|+||+|+... ..++........ .+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~ 152 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY---------GI 152 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc---------CC
Confidence 9999999999999998744333322 2222222 36789999999999542 222332222222 25
Q ss_pred cEEEeccCCCCChhhHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~l 655 (996)
+++++||++|.|++++|++|...
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999753
No 109
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.2e-18 Score=168.33 Aligned_cols=146 Identities=24% Similarity=0.363 Sum_probs=110.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH--------HHHHhhhc
Q 001915 495 TIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARGARV 565 (996)
Q Consensus 495 aIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~--------mr~rga~~ 565 (996)
+++|++|+|||||+++|.+.... ....+++|++........ .+..+.||||||+..+.. .....+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----GGREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 58999999999999999977543 345566777654444332 336799999999987544 33456788
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 566 ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
+|++++|+|+.++......+....++..+.|+++|+||+|+...... ...+...+ ..+++++||++|.|+
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~--------~~~~~~~Sa~~~~gv 146 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYSLG--------FGEPIPISAEHGRGI 146 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHhcC--------CCCeEEEecccCCCH
Confidence 99999999999887777777778888888999999999999654322 22222222 126899999999999
Q ss_pred hhHHHHHHH
Q 001915 646 DDLLETIML 654 (996)
Q Consensus 646 dEL~eaIl~ 654 (996)
++++++|..
T Consensus 147 ~~l~~~l~~ 155 (157)
T cd01894 147 GDLLDAILE 155 (157)
T ss_pred HHHHHHHHh
Confidence 999999864
No 110
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.5e-18 Score=189.64 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=157.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC-------CccccccCCceeeeceEEEEEee-----CCccccEEEEeCCCccchHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMR 559 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s-------~va~se~gGiTqdI~a~~V~i~i-----dgk~~~ItfIDTPGhE~F~~mr 559 (996)
.+++|+||+|+|||||..+|... .-..+...|+|.|+++..+.... .+....++|+|+|||.......
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 57999999999999999999632 12234557899999987765532 3455678999999999988888
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-----hhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-----PERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-----~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
..++...|+.+||+|+..|.+.|+.|++-.........|||+||+|....+ .++....+. ..+....|+++.|+
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~-KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR-KTLESTGFDGNSPI 166 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH-HHHHhcCcCCCCce
Confidence 889999999999999999999999999888777777899999999974322 122222222 13334456788999
Q ss_pred EEeccCCC----CChhhHHHHHHHHHHHHhhhcCCCCCCcce----EEEEeeecCCCcEEEEEEEcCEeccCcEEEEc
Q 001915 635 VQISALKG----EKVDDLLETIMLVAELQELKANPHRNAKGT----VIEAGLHKSKGPVATFILQNGTLKKGDVVVCG 704 (996)
Q Consensus 635 VeISAktG----eGIdEL~eaIl~lael~elk~~p~r~~~g~----Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG 704 (996)
+++||+.| ++|.+|.+.|... ...|.|...|. |-.++-.+|.|+|.|+.+.+|.|+.|+.|-+-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~------if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~P 238 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESR------IFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFP 238 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHh------hcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeec
Confidence 99999999 7888888776532 22344544444 44566679999999999999999999998763
No 111
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7.1e-19 Score=180.91 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=121.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+-++|.++|+.|+|||.|+.++....+..... .|+++++....+.++++..++++|||+|||+|..+...||+.|++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~--sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYI--STIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhc--ceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 355799999999999999999999888875554 477777777777789999999999999999999999999999999
Q ss_pred EEEEEecCCCCCh----hHHHHHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCc-EEEeccC
Q 001915 569 AVIVVAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIP-MVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~----Qt~E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ip-vVeISAk 640 (996)
+|+|||+++.-+. +|++.++.....++|.++|+||||+.+.. .+........+ .++ ++++|||
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~---------~~~~f~ETSAK 155 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL---------GIPIFLETSAK 155 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc---------CCcceeecccC
Confidence 9999999984332 33333444444678999999999995432 22222222222 245 9999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
++.|+++.|..|...
T Consensus 156 ~~~NVe~~F~~la~~ 170 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKE 170 (205)
T ss_pred CccCHHHHHHHHHHH
Confidence 999999999988643
No 112
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=1.6e-18 Score=170.85 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=102.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc----------hHHHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAMRAR 561 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~----------F~~mr~r 561 (996)
|+|+++|++|+|||||+++|.+..+.....+++|.++....+. .....++||||||+.. +..+. .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----YKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-A 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc----cCceEEEEEECCCcCCccccCCchHHHHHHH-H
Confidence 6899999999999999999998877555555666665333322 2346899999999742 11111 1
Q ss_pred hhhcCCeEEEEEecCCCCC---hhHHHHHHHHHHc--CCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 562 GARVTDIAVIVVAADDGIR---PQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~---~Qt~E~I~~ak~~--~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
....+|++|+|+|+++... ....+.+..++.. ++|+|+|+||+|+..........++... ...++++
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--------~~~~~~~ 147 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEEL--------EGEEVLK 147 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhh--------ccCceEE
Confidence 2244799999999987532 2223444455444 7999999999999542211111121111 2367999
Q ss_pred eccCCCCChhhHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIML 654 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~ 654 (996)
+||++|.|+++++++|..
T Consensus 148 ~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 148 ISTLTEEGVDEVKNKACE 165 (168)
T ss_pred EEecccCCHHHHHHHHHH
Confidence 999999999999999864
No 113
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.80 E-value=9.6e-19 Score=175.66 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=107.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+++|++++|||||+++|....+.. .. .|.+.....+. ...+.+.||||||++.|..++..++..+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~--~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TI--PTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-cc--CCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 345799999999999999999998655432 22 23333332222 245789999999999999999999999999
Q ss_pred EEEEEecCCCCCh-hHHHHHH-HHH---HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRP-QTNEAIA-HAK---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~-Qt~E~I~-~ak---~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|||||+++.... ...+.+. .+. ..++|+++++||+|+.+. ..+++...+....+. ....+++++||++|
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~SAk~g 155 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIR----DRNWYVQPSCATSG 155 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccC----CCcEEEEEeeCCCC
Confidence 9999999984322 1222222 222 246899999999999643 333333333211111 12246899999999
Q ss_pred CChhhHHHHHH
Q 001915 643 EKVDDLLETIM 653 (996)
Q Consensus 643 eGIdEL~eaIl 653 (996)
.|++++|++|.
T Consensus 156 ~gv~~~~~~l~ 166 (168)
T cd04149 156 DGLYEGLTWLS 166 (168)
T ss_pred CChHHHHHHHh
Confidence 99999999985
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=8.3e-19 Score=172.41 Aligned_cols=150 Identities=23% Similarity=0.253 Sum_probs=104.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|++++|||||+++|....+.. .. .|.+.....+. .....+.||||||++.|..++..++..+|++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~--~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TI--PTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cC--CccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999997665532 22 24343333332 2456899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHH-HHH---HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGIRPQ-TNEAIA-HAK---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv~~Q-t~E~I~-~ak---~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|+++..... ..+.+. .++ ..++|+++++||+|+.+.. ..++...+....+. ....++++|||++|.||+
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~ 149 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELK----DRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccC----CCcEEEEEeeccCCCCHH
Confidence 9998743221 122222 222 2478999999999996543 23333322111110 113579999999999999
Q ss_pred hHHHHHH
Q 001915 647 DLLETIM 653 (996)
Q Consensus 647 EL~eaIl 653 (996)
++|++|.
T Consensus 150 ~l~~~l~ 156 (158)
T cd04151 150 EGMDWLV 156 (158)
T ss_pred HHHHHHh
Confidence 9999985
No 115
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.79 E-value=1.9e-18 Score=170.12 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=111.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+++|||||+++|.+..+.....+.++.+ +....+..++....+.||||||++.|..++..++..+|++|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE--FATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 689999999999999999999887765544444433 334444556666789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+... ++..+.. .++|+++|+||+|+.... .++... +... + .++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~-~~~~------~--~~~~~~~Sa~~~~~ 152 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKA-FAEK------N--GLSFIETSALDGTN 152 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHH-HHHH------c--CCEEEEEECCCCCC
Confidence 99998743333222 2222222 358999999999985432 122222 2221 1 35799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 153 v~~l~~~l~~ 162 (165)
T cd01868 153 VEEAFKQLLT 162 (165)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 116
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=3.9e-19 Score=186.64 Aligned_cols=147 Identities=31% Similarity=0.476 Sum_probs=110.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEeeCCcc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPVDGKL 541 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~idgk~ 541 (996)
+|+|+||+|||||||+++|+.... ......|+|++...+.+.. .+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~----~~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET----EK 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee----CC
Confidence 489999999999999999962110 0123457888876655543 45
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC-------CCChhHHHHHHHHHHcC-CCEEEEecccCCCCC--C-
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGA--N- 610 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd-------gv~~Qt~E~I~~ak~~~-IPIIVVINKiDL~~a--~- 610 (996)
+.++|||||||..|...+..++..+|++|+|+|+.+ +...++.+++..+...+ .|+|+++||+|+... +
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccH
Confidence 789999999999999888888999999999999998 56778888888777777 579999999999732 2
Q ss_pred --hhHHHHHHH----hcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 611 --PERVMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 611 --~erv~~eL~----~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
.+.+..++. ..++. ...+++++|||++|.||++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~----~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYN----PKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCC----cCCceEEEeecCcCCCCCc
Confidence 233343332 22221 1247899999999999974
No 117
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=2.6e-18 Score=177.43 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=114.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|+++|..++|||||+.+|....+.....+.++ ..++...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~--~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMG--IDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcce--eEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 447899999999999999999998766543333333 334444455677778999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HHHHHH--HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQTNE-AIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I~~ak--~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|||||+++....+... ++..+. ..++|+||++||+|+.+. ..++........ .+++++|||++|.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---------~~~~~e~SAk~g~ 153 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---------GMTFFEVSPLCNF 153 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---------CCEEEEecCCCCC
Confidence 9999999854333322 222222 247899999999999542 222222222222 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q 001915 644 KVDDLLETIMLVA 656 (996)
Q Consensus 644 GIdEL~eaIl~la 656 (996)
||+++|++|....
T Consensus 154 ~V~~~F~~l~~~i 166 (189)
T cd04121 154 NITESFTELARIV 166 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=8.9e-19 Score=171.33 Aligned_cols=153 Identities=24% Similarity=0.304 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+|+|.+|+|||||+++|....+... ..|.+.....+.. ...+.+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~---~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc---cCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 489999999999999999998776432 2344433333332 2456899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHH----HHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGIRPQ-TNEAIAH----AKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv~~Q-t~E~I~~----ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|+++..... ....+.. ....++|+++++||+|+... ..+.+...+....+.. ...+++++|||++|+||+
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCS---DRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCC---CCcEEEEecccccCCChH
Confidence 9998753211 1112222 12257999999999999643 2333332222111111 123579999999999999
Q ss_pred hHHHHHHH
Q 001915 647 DLLETIML 654 (996)
Q Consensus 647 EL~eaIl~ 654 (996)
++|++|..
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999853
No 119
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=1.4e-18 Score=174.79 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|+.++|||||++++....+...+.+ |....++...+.+++..+.+.||||||++.|..++..+++.+|++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKA--TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 689999999999999999998877654444 443444444455567778899999999999999999999999999999
Q ss_pred EecCCCCChhH-HHHHHHHHHc----CCCEEEEecccCCCCCCh----hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 573 VAADDGIRPQT-NEAIAHAKAA----GVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 573 VDAsdgv~~Qt-~E~I~~ak~~----~IPIIVVINKiDL~~a~~----erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|+++...... .+++..+... ..|+|+|+||+|+..... +.....+.. .+ ..+++++||++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-~~-------~~~~~e~Sa~~g~ 151 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-EM-------QAEYWSVSALSGE 151 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-Hc-------CCeEEEEECCCCC
Confidence 99987432222 2233333222 356999999999854321 111112211 11 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q 001915 644 KVDDLLETIMLVA 656 (996)
Q Consensus 644 GIdEL~eaIl~la 656 (996)
|++++|+.|..++
T Consensus 152 ~v~~lf~~l~~~~ 164 (170)
T cd04108 152 NVREFFFRVAALT 164 (170)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997664
No 120
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.2e-18 Score=178.03 Aligned_cols=162 Identities=23% Similarity=0.253 Sum_probs=111.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+|+|||||+++|....+.....+ |.... +...+..++..+.+.||||||++.|..++..++..+|++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEP--TVFEN-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCC--cceee-eEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 3799999999999999999998777543333 32222 22233446666789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--HHHHHHH--cCCCEEEEecccCCCCCChhH-HHHHHHh------cCCCCCCCCCCCcEEEeccC
Q 001915 572 VVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGANPER-VMQELSS------IGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 572 VVDAsdgv~~Qt~E--~I~~ak~--~~IPIIVVINKiDL~~a~~er-v~~eL~~------~gl~~e~~gg~ipvVeISAk 640 (996)
|||+++....+..+ ++..+.. .++|+|+|+||+|+....... ....+.. .+.......+.++|++|||+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999865444332 2333332 378999999999996432111 1000000 00000001123679999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||+++|++|...+
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 121
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=2.1e-18 Score=176.18 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=111.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+|+|||||+++|....+...... .|....+....+.+++..+.++||||||++.|..++..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFI-ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcC-CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 4799999999999999999998776543222 233333333334456677889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHH---HcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak---~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+++....+. ..++..+. ..++|+++|+||+|+.... .......+... + .++++++||++|.|+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~------~--~~~~~e~Sa~~~~~v 151 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE------Y--GVPFMETSAKTGLNV 151 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH------c--CCeEEEEeCCCCCCH
Confidence 999987533222 22222232 2368999999999995321 11112222221 1 257999999999999
Q ss_pred hhHHHHHHHHHH
Q 001915 646 DDLLETIMLVAE 657 (996)
Q Consensus 646 dEL~eaIl~lae 657 (996)
++||++|.....
T Consensus 152 ~~l~~~l~~~~~ 163 (191)
T cd04112 152 ELAFTAVAKELK 163 (191)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 122
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.79 E-value=3.1e-18 Score=168.17 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=107.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--CccccccCCceeeeceEEEEEee-CCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s--~va~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+|+++|.+++|||||+++|... .+..... .|.+...+...+.+ .+..+.+.+|||||++.|..++..++..+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYL--MTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCC--CceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 37999999999999999999864 3333222 34444343333333 3566889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH--cCCCEEEEecccCCCCCC-hhH-HHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGAN-PER-VMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~--~~IPIIVVINKiDL~~a~-~er-v~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+++|+|+++....... .++..+.. .++|+|+|+||+|+.... ... ....+... ..++++++||++|.
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~ 150 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA--------NQLKFFKTSALRGV 150 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH--------cCCeEEEEeCCCCC
Confidence 9999999875332222 22233322 368999999999995432 111 11122211 12579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|++++|+.|...
T Consensus 151 gi~~l~~~l~~~ 162 (164)
T cd04101 151 GYEEPFESLARA 162 (164)
T ss_pred ChHHHHHHHHHH
Confidence 999999998764
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.3e-18 Score=176.11 Aligned_cols=161 Identities=24% Similarity=0.222 Sum_probs=112.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+..+|+|+|++|+|||||+++|....+.. ...|.+.....+. ++ +..+.+|||||++.|..++..++..+
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~~i~--~~--~~~~~l~D~~G~~~~~~~~~~~~~~a 87 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSEELT--IG--NIKFKTFDLGGHEQARRLWKDYFPEV 87 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhccC
Confidence 34567899999999999999999998766531 2234444333333 33 36799999999999998888889999
Q ss_pred CeEEEEEecCCCCCh-hHHHHHHHH----HHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCC-------CCCCCCCc
Q 001915 567 DIAVIVVAADDGIRP-QTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP-------EDWGGDIP 633 (996)
Q Consensus 567 DiVILVVDAsdgv~~-Qt~E~I~~a----k~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~-------e~~gg~ip 633 (996)
|++++|+|+++.... ...+.+..+ ...+.|+++++||+|+... ..+++...+....+.. +.......
T Consensus 88 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (190)
T cd00879 88 DGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIE 167 (190)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEE
Confidence 999999999874221 122222222 2356899999999999643 3444444443322111 12223467
Q ss_pred EEEeccCCCCChhhHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~ 654 (996)
+++|||++|+|++++|++|..
T Consensus 168 ~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 168 VFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred EEEeEecCCCChHHHHHHHHh
Confidence 999999999999999999964
No 124
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=1.2e-18 Score=172.92 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=109.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++++|||||+++|.+..+.....+.+ . ..+...+.+++..+.+.||||||++.|..++..++..+|++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-F--DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e--eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 379999999999999999999877654333222 1 2333445556667789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--HHHHHH--HcCCCEEEEecccCCCCCChhH---------------HHHHHHhcCCCCCCCCCCC
Q 001915 572 VVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGANPER---------------VMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 572 VVDAsdgv~~Qt~E--~I~~ak--~~~IPIIVVINKiDL~~a~~er---------------v~~eL~~~gl~~e~~gg~i 632 (996)
|+|+++....+... ++..+. ..++|+++++||+|+.+..... ........ +..
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~ 149 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI--------GAH 149 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc--------CCC
Confidence 99998864433221 222222 3578999999999985432111 11111111 234
Q ss_pred cEEEeccCCCCChhhHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~l 655 (996)
++++|||++|.||+++|+.++..
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHH
Confidence 69999999999999999998753
No 125
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.9e-18 Score=176.02 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=111.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|..++|||||++++....+.....+ |... .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVP--TVFE-NYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCC--ceEE-EEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 4799999999999999999998877544333 3222 233445567788899999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCCCCC
Q 001915 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 572 VVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~gg~i 632 (996)
|||+++....+.. .++..++. .++|+|+|+||+||... ..++..+....++ ..
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------~~ 150 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------AE 150 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------CC
Confidence 9999986544431 23333332 46899999999999531 1111111111111 23
Q ss_pred cEEEeccCCCCC-hhhHHHHHHHH
Q 001915 633 PMVQISALKGEK-VDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeG-IdEL~eaIl~l 655 (996)
+|++|||++|+| |+++|..+...
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999998763
No 126
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.79 E-value=6.1e-19 Score=179.58 Aligned_cols=159 Identities=27% Similarity=0.320 Sum_probs=126.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|.|+|++|||||||++++.+.++..... .|++..+.+.++.+++..+.+++|||+|+|+|..+....++.+|++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyk--aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYK--ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhc--cccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 45789999999999999999999988875544 3666667777788888899999999999999999999999999999
Q ss_pred EEEEecCCCCChh-----HHHHHHHHHH---cCCCEEEEecccCCCCCC-----hhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 570 VIVVAADDGIRPQ-----TNEAIAHAKA---AGVPIVIAINKIDKDGAN-----PERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 570 ILVVDAsdgv~~Q-----t~E~I~~ak~---~~IPIIVVINKiDL~~a~-----~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
+||||+++.-... -.|.+.++.. ..-|+||++||+|+.+.. ..+...+.... +++|||+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------gnipyfE 157 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------GNIPYFE 157 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc--------CCceeEE
Confidence 9999999754433 3444444432 246899999999996522 33444444443 4789999
Q ss_pred eccCCCCChhhHHHHHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIMLVAEL 658 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~lael 658 (996)
+|||.+.||++.|+.+...+-.
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ecccccccHHHHHHHHHHHHHh
Confidence 9999999999999999876543
No 127
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=2.1e-18 Score=174.32 Aligned_cols=158 Identities=19% Similarity=0.238 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+++|||||+.++....+.....+ |.. ..+...+.+++..+.+.||||||++.|..++..++..+|++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--TVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC--cce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 5899999999999999999998776543333 222 2334444567777889999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--HHHHHHH--cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCC-------CCCCCCCCcEEEec
Q 001915 572 VVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGAN--PERVMQELSSIGLM-------PEDWGGDIPMVQIS 638 (996)
Q Consensus 572 VVDAsdgv~~Qt~E--~I~~ak~--~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~-------~e~~gg~ipvVeIS 638 (996)
|||+++....+... ++..+.. .++|+|+|+||+|+.... .+.+... ....+. ...+ +.+++++||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~~~e~S 156 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK-KLTPITYPQGLAMAKEI-GAVKYLECS 156 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhc-cCCCCCHHHHHHHHHHc-CCcEEEEec
Confidence 99999854444331 2222222 368999999999995321 1111100 000000 0011 235899999
Q ss_pred cCCCCChhhHHHHHHH
Q 001915 639 ALKGEKVDDLLETIML 654 (996)
Q Consensus 639 AktGeGIdEL~eaIl~ 654 (996)
|++|.||+++|+.+..
T Consensus 157 a~~~~~i~~~f~~l~~ 172 (174)
T cd01871 157 ALTQKGLKTVFDEAIR 172 (174)
T ss_pred ccccCCHHHHHHHHHH
Confidence 9999999999998864
No 128
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=1.7e-18 Score=172.01 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|..++|||||+++|....+. ... .|.+.....+. ...+.+.||||||++.|..++..+++.+|++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~--pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccC--CCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 37999999999999999999766554 222 34343332222 245789999999999999999999999999999
Q ss_pred EEecCCCCC-hhHHHHHHHH-H---HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIR-PQTNEAIAHA-K---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~-~Qt~E~I~~a-k---~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+++... .+..+.+..+ . ..+.|+++++||+|+.+.. .+++...+....+ ....+.++++||++|.||
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL----RNRNWYIQATCATSGDGL 149 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc----CCCCEEEEEeeCCCCCCH
Confidence 999987421 1222222222 1 2358999999999996432 2333333311111 112346789999999999
Q ss_pred hhHHHHHH
Q 001915 646 DDLLETIM 653 (996)
Q Consensus 646 dEL~eaIl 653 (996)
+++|++|.
T Consensus 150 ~~~~~~l~ 157 (159)
T cd04150 150 YEGLDWLS 157 (159)
T ss_pred HHHHHHHh
Confidence 99999985
No 129
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=1.6e-18 Score=182.12 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=114.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
....+|+++|..|+|||||++++....+..... .|.+..++...+..++..+.+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~--~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccC--CccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 455799999999999999999998776654333 344444555555556667899999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHH-HHHHHH--HcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 569 AVIVVAADDGIRPQTNE-AIAHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E-~I~~ak--~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+|||+++....+... ++..+. ..++|+|+|+||+|+..... .... .+... ..++|++|||++|.|
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK--------KNLQYYEISAKSNYN 159 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHh--------cCCEEEEcCCCCCCC
Confidence 99999999865443322 222222 24789999999999953221 1111 22211 136799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
|+++|++|...
T Consensus 160 i~~~f~~l~~~ 170 (219)
T PLN03071 160 FEKPFLYLARK 170 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 130
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.79 E-value=2.6e-18 Score=168.22 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=111.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++++|||||+++|.+..+..... .|.+..+....+.+++....+.+|||||++.|..++..+++.+|++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQE--STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 589999999999999999999887654332 233333334444566777889999999999999999889999999999
Q ss_pred EEecCCCCChh-HHHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Q-t~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++..... ...++..+.. .++|+++++||+|+... +.+.........+ ++++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 150 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG---------LLFFETSAKTGEN 150 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC---------CEEEEEECCCCCC
Confidence 99998743222 2223333333 35789999999998632 2233333222221 5799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
++++|++|...
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd01860 151 VNELFTEIAKK 161 (163)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 131
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.79 E-value=3.1e-18 Score=176.42 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=113.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++|+|+|.+|+|||||+++|.+..+..... .|..+.++...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4789999999999999999999877654333 34444444444455666678999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHHH--cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak~--~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+|+++....+.. .++..+.. ..+|++||+||+|+.... .+......... ..+++++||++|.|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~g 154 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM---------GISLFETSAKENIN 154 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECCCCcC
Confidence 99999885433322 22333322 358999999999996421 12222222221 25799999999999
Q ss_pred hhhHHHHHHHHH
Q 001915 645 VDDLLETIMLVA 656 (996)
Q Consensus 645 IdEL~eaIl~la 656 (996)
|+++|++|....
T Consensus 155 i~~lf~~l~~~~ 166 (199)
T cd04110 155 VEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 132
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=3.2e-18 Score=166.76 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=108.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||+++|....+..... +++.+ .+.....+++..+.+.||||||++.|..++..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYE-PTKAD--SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccC-Ccchh--hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 479999999999999999999776653322 22222 223334456677889999999999999999999999999999
Q ss_pred EEecCCCCCh----hHHHHHHHH-HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 572 VVAADDGIRP----QTNEAIAHA-KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 572 VVDAsdgv~~----Qt~E~I~~a-k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|+++.... ++...+... ...++|+++|+||+|+... ............ .++++++||++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 148 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW---------GVPYVETSAKTRQ 148 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEeeCCCCC
Confidence 9999874321 111222221 1257999999999999652 112222222221 2579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|++++|++|...
T Consensus 149 gi~~l~~~l~~~ 160 (164)
T cd04139 149 NVEKAFYDLVRE 160 (164)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 133
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=1.4e-18 Score=184.24 Aligned_cols=162 Identities=28% Similarity=0.418 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeceEEEEEe--------------------eC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP--------------------VD 538 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se--------------~gGiTqdI~a~~V~i~--------------------id 538 (996)
+|+++|+.++|||||+++|....+..+. ..|+|..+....+.+. +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4889999999999999999865443211 1234432211111110 12
Q ss_pred CccccEEEEeCCCccchHHHHHHhhh--cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHH
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGAR--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVM 615 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~--~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~ 615 (996)
..++.++|+|||||+.|...+.+++. .+|++++|+|++++...++.+++..+...++|+|+|+||+|+...+ .....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 23567999999999999888887774 7999999999999999999999999999999999999999985322 23333
Q ss_pred HHHHhc----CCC-----------------CCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 616 QELSSI----GLM-----------------PEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 616 ~eL~~~----gl~-----------------~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
.++... +.. ...|...+|+|++||.+|+|+++|...|..
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333321 111 023455679999999999999999988754
No 134
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=3.9e-19 Score=205.78 Aligned_cols=219 Identities=19% Similarity=0.241 Sum_probs=144.4
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhcccCC
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~~R 490 (996)
.+++.+|.+.++.....+...|... ...+...||++.-. + .+.....+......+...+ ..+....+.......
T Consensus 141 ~~al~~l~G~l~~~~~~~r~~l~~~--~a~iea~iDf~ee~-~-~~~~~~~i~~~i~~l~~~l--~~l~~~~~~~~~~~~ 214 (449)
T PRK05291 141 RLALRQLQGALSKLINELREELLEL--LALVEAAIDFPEED-I-EFLSDEKILEKLEELIAEL--EALLASARQGEILRE 214 (449)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHH--HHHheEEccCCCCC-c-ccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhc
Confidence 3677888888888888888888776 44555556664411 0 0111100000011111111 111122233444556
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH--------HHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RAR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m--------r~r 561 (996)
.++|+++|++|+|||||+|+|.+.... .+..+++|+++....+. ++ +..++||||||+..+... ...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~--~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHIN--LD--GIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEE--EC--CeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 789999999999999999999987653 66778889876443333 33 357999999998655422 223
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++..+|++|+|+|++++......+.+.. ..++|+++|+||+|+....... .....+++++||++
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~iSAkt 354 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRISAKT 354 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh--------------hccCCceEEEEeeC
Confidence 5789999999999998776665555444 4578999999999995422111 01135799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.|+++|+++|...
T Consensus 355 g~GI~~L~~~L~~~ 368 (449)
T PRK05291 355 GEGIDELREAIKEL 368 (449)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 135
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=4.6e-18 Score=167.72 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
-++|+++|++|+|||||+++|....+.... +.|.........+.+++....+.||||||++.|..++..++..+|+++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 478999999999999999999876654433 334333334444455666678999999999999999999999999999
Q ss_pred EEEecCCCCChhH----HHHHHHHHHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 571 IVVAADDGIRPQT----NEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 571 LVVDAsdgv~~Qt----~E~I~~ak~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+|++++..... ...+..+...++|+++++||+|+..... ......+.... ..+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~--------~~~~~~~Sa~~~~g 156 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ--------DMYYLETSAKESDN 156 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--------CCeEEEeeCCCCCC
Confidence 9999987543322 2222333334789999999999853221 22223333221 25799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++|++|..
T Consensus 157 v~~l~~~i~~ 166 (169)
T cd04114 157 VEKLFLDLAC 166 (169)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 136
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=4.4e-18 Score=168.85 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+++|||||++++....+..... .|.+...+...+.+++..+.+.||||||++.|..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 379999999999999999999877754433 344444444445556666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|||+++.-..+.. .++..+. ..++|+++++||+|+..... ......+... + .++++++||++|.||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~------~--~~~~~e~Sa~~~~~v 150 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE------Y--GMDFFETSACTNSNI 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH------c--CCEEEEEeCCCCCCH
Confidence 9999884332222 1222222 23689999999999854321 1222222221 1 267999999999999
Q ss_pred hhHHHHHHH
Q 001915 646 DDLLETIML 654 (996)
Q Consensus 646 dEL~eaIl~ 654 (996)
+++|++|..
T Consensus 151 ~~~f~~l~~ 159 (161)
T cd04117 151 KESFTRLTE 159 (161)
T ss_pred HHHHHHHHh
Confidence 999999864
No 137
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=4e-18 Score=166.90 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++|+|||||+++|.+..+.....+.++. .+....+.+++..+.+.||||||++.|..++...++.+|++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGV--DFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccc--eEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 47999999999999999999987765433332222 2222333345566789999999999999999889999999999
Q ss_pred EEecCCCCChhHHHHH-H----HHHHcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNEAI-A----HAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~I-~----~ak~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+....+ . +....++|+++++||+|+.... .+......... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH---------NMLFIETSAKTRDG 149 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc---------CCEEEEEecCCCCC
Confidence 9999875433332222 2 2223578899999999996322 22222222221 36799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
++++++.++.
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd01863 150 VQQAFEELVE 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 138
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.78 E-value=6.1e-18 Score=171.78 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++++|||||+++|.+..+...... .|.+..++...+.+++..+.+.||||||++.|..++..++..+|++||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcc-cceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 3799999999999999999998877543222 233333333345566777788999999999999999888999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH--cCCCEEEEecccCCCCCCh--hH----HHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGANP--ER----VMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~--~~IPIIVVINKiDL~~a~~--er----v~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|||+++....+. ..++..+.. .++|+|+|+||+|+..... .. ....+... + .++++++||++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~------~--~~~~~~~Sa~~~ 151 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE------I--KAQHFETSSKTG 151 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH------c--CCeEEEEeCCCC
Confidence 999987543322 223333333 2689999999999853221 11 11111111 1 257899999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.|+++||++|....
T Consensus 152 ~gv~~l~~~i~~~~ 165 (193)
T cd04118 152 QNVDELFQKVAEDF 165 (193)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 139
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=2.2e-18 Score=168.48 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|++|+|||||++++.+..... ...|.++....+. + ....+.||||||++.|...+...+..+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---TIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999776321 2223333332322 2 346799999999999999999999999999999
Q ss_pred EecCCCC-ChhHHHHH----HHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGI-RPQTNEAI----AHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv-~~Qt~E~I----~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|+++.- .......+ ......+.|+++++||+|+.... .+++...+..... ....++++++||++|.|++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI----LGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc----cCCcEEEEEeeCCCCCCHH
Confidence 9999752 11122222 22223578999999999996533 3334333322111 1124689999999999999
Q ss_pred hHHHHHHH
Q 001915 647 DLLETIML 654 (996)
Q Consensus 647 EL~eaIl~ 654 (996)
++|++|..
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99999863
No 140
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=5.7e-18 Score=164.31 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=108.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+++|||||+++|....+.....+.++.+. ....+.+.+....+.+|||||++.|..++..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASF--FQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeE--EEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 4799999999999999999998777544433333332 22233344556789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH----HHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE----AIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E----~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+... .+......++|+++++||+|+.... .+.+....... ..+++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~g 149 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---------GAKHFETSAKTGKG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 99998854433222 2222222368999999999996422 22222222221 25789999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
+++++++|..
T Consensus 150 i~~~~~~l~~ 159 (162)
T cd04123 150 IEELFLSLAK 159 (162)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=6.2e-18 Score=173.04 Aligned_cols=154 Identities=28% Similarity=0.414 Sum_probs=107.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC-----------ccchHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-----------HEAFGAM 558 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG-----------hE~F~~m 558 (996)
+.++|+++|.+|+|||||+++|.+..+.....+++|++... +.+. .+++||||| .+.|..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~----~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH----YDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE----Eeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 45799999999999999999999887766666777765322 2222 599999999 4566665
Q ss_pred HHHhh----hcCCeEEEEEecCCCC-----------ChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHH-hcC
Q 001915 559 RARGA----RVTDIAVIVVAADDGI-----------RPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS-SIG 622 (996)
Q Consensus 559 r~rga----~~ADiVILVVDAsdgv-----------~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~-~~g 622 (996)
+..++ ..+|++++|+|+++.. ...+.+++..+...++|+++|+||+|+.... .....++. ..+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~ 158 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLG 158 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhc
Confidence 55444 4568999999986521 2234556666677799999999999996433 22223322 233
Q ss_pred CC--CCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 623 LM--PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 623 l~--~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+. ...| ..+++++||++| ||++++++|...
T Consensus 159 ~~~~~~~~--~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 159 LYPPWRQW--QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred CCcccccc--CCcEEEEecccC-CHHHHHHHHHHh
Confidence 21 1111 246899999999 999999999753
No 142
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=1.5e-18 Score=177.28 Aligned_cols=156 Identities=13% Similarity=0.179 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|..++|||||+.+|....+...+.+ |.+..++...+.+++..+.+.+|||+|++.|..++..+++.+|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~--T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ--TLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 4799999999999999999998877544333 55444544455567777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC---h-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 572 VVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---P-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~---~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|||+++....+.. +++..+.. ...| |+|+||+|+.... . ..+..+..... ..+ ..+++++||++|.
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a---~~~--~~~~~e~SAk~g~ 152 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA---KAM--KAPLIFCSTSHSI 152 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH---HHc--CCEEEEEeCCCCC
Confidence 9999885433322 22233322 2455 6789999995311 1 11121111111 111 2679999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|++++|++|...
T Consensus 153 ~v~~lf~~l~~~ 164 (182)
T cd04128 153 NVQKIFKIVLAK 164 (182)
T ss_pred CHHHHHHHHHHH
Confidence 999999998753
No 143
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=5.4e-18 Score=180.87 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=113.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+++|..++|||||+.+|....+.....+ |.... +...+.+++..+.+.||||+|++.|..++..+++.+|++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~p--Ti~~~-~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP--TVFEN-YTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCC--ceeee-eEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 36899999999999999999998877654443 33322 3344566788889999999999999999999999999999
Q ss_pred EEEecCCCCChhH--HHHHHHHHH--cCCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCCCC
Q 001915 571 IVVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 571 LVVDAsdgv~~Qt--~E~I~~ak~--~~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~gg~ 631 (996)
||||+++....+. ..++..+.. .++|+|+|+||+|+... ..++..+....+ .
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~---------~ 160 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL---------G 160 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc---------C
Confidence 9999998554442 123333332 36899999999998531 111222222222 2
Q ss_pred C-cEEEeccCCCC-ChhhHHHHHHHHH
Q 001915 632 I-PMVQISALKGE-KVDDLLETIMLVA 656 (996)
Q Consensus 632 i-pvVeISAktGe-GIdEL~eaIl~la 656 (996)
+ .|++|||++|. ||+++|+.+....
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4 59999999998 8999999987653
No 144
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=7.2e-18 Score=168.22 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=112.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH-HHHHHhhhcCCe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVTDI 568 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~-~mr~rga~~ADi 568 (996)
|..+|+++|++|+|||||+++|....+..... .|....++...+.+++..+.+.+|||||++.|. .++..+++.+|+
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~ 78 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHA 78 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence 34689999999999999999998776654333 344444444555567777889999999999987 577888899999
Q ss_pred EEEEEecCCCCChhHHHHH-HHHHH----cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTNEAI-AHAKA----AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I-~~ak~----~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++....+....+ ..+.. .++|+|+|+||+|+.... .......+... ..++|+++||++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~ 150 (170)
T cd04115 79 VVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA--------HSMPLFETSAKD 150 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH--------cCCcEEEEeccC
Confidence 9999999986555444332 23322 468999999999985422 12233333322 136799999999
Q ss_pred ---CCChhhHHHHHHH
Q 001915 642 ---GEKVDDLLETIML 654 (996)
Q Consensus 642 ---GeGIdEL~eaIl~ 654 (996)
+.||+++|..+..
T Consensus 151 ~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 151 PSENDHVEAIFMTLAH 166 (170)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 8899999988764
No 145
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=5.1e-18 Score=171.25 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=108.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
....+|+++|.+++|||||+++|....+. ... .|.+.....+. .....+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~--~t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTI--PTIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcC--CccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 34689999999999999999999765553 222 24333333222 245789999999999999999999999999
Q ss_pred EEEEEecCCCCC-hhHHHHHHHHH----HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~-~Qt~E~I~~ak----~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++... ....+.+..+. ..++|++|++||+|+.+.. .+++...+ ++... ....+.++++||++|
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~~-~~~~~~~~~~Sa~~g 159 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHSI-RDRNWYIQPTCATSG 159 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Ccccc-CCCcEEEEEeeCCCC
Confidence 999999987432 12233333221 2368999999999996532 23333322 22111 112345778999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|...
T Consensus 160 ~gv~e~~~~l~~~ 172 (175)
T smart00177 160 DGLYEGLTWLSNN 172 (175)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998643
No 146
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.78 E-value=8.4e-18 Score=175.43 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=109.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCC-ccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idg-k~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.+|+|+|.+|+|||||+++|.+..+.....+ |..+.++...+.+++ ..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 4799999999999999999998877655444 433444444444443 4678999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH-HHHHHHH------cCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 571 IVVAADDGIRPQTNE-AIAHAKA------AGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E-~I~~ak~------~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
||||+++.......+ ++..+.. .+.|+|+|+||+|+.+... ......+... + .++++++||++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~------~--~~~~~~iSAkt 150 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA------N--GMESCLVSAKT 150 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH------c--CCEEEEEECCC
Confidence 999999753333222 2222222 2457999999999953211 1112222221 1 25789999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|+||+++|++|...
T Consensus 151 g~gv~~lf~~l~~~ 164 (215)
T cd04109 151 GDRVNLLFQQLAAE 164 (215)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 147
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=3.5e-18 Score=170.82 Aligned_cols=152 Identities=21% Similarity=0.168 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|.+++|||||+++|....+.. ..+|.+.....+ +.....+.+|||||++.|..++..++..+|++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---PIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 48999999999999999999765432 233544333322 23457899999999999999999999999999999
Q ss_pred EecCCCCCh-hHHHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGIRP-QTNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv~~-Qt~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|+++.... ...+.+..+. ..+.|+++|+||+|+... ..+++...+....+. ......+++|||++|.||+
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC---CGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc---CCCcEEEEeCcCCCCCCHH
Confidence 999874211 1122222221 235899999999999643 223333332211110 1112468899999999999
Q ss_pred hHHHHHHH
Q 001915 647 DLLETIML 654 (996)
Q Consensus 647 EL~eaIl~ 654 (996)
++|++|..
T Consensus 151 ~~f~~l~~ 158 (169)
T cd04158 151 EGLDWLSR 158 (169)
T ss_pred HHHHHHHH
Confidence 99999964
No 148
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.8e-18 Score=177.33 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=121.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|..++|||||+-++....|..... .|++-.++...+.++...+++.||||+|+|+|..+...||+.+++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e--~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIE--PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccc--cccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 456799999999999999999999888865433 366666777777777778899999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHHcCCC---EEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKAAGVP---IVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~~~IP---IIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++.-+.+. +.++..++...-| +.+|+||+||... ..++........+ ..|+++|||+
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g---------ll~~ETSAKT 151 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG---------LLFFETSAKT 151 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC---------CEEEEEeccc
Confidence 999999998554444 4445556554334 5579999999541 2233333333333 5799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|..|....
T Consensus 152 g~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 152 GENVNEIFQAIAEKL 166 (200)
T ss_pred ccCHHHHHHHHHHhc
Confidence 999999999997543
No 149
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.6e-18 Score=186.96 Aligned_cols=212 Identities=27% Similarity=0.355 Sum_probs=159.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEEee----------------C------CccccE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPV----------------D------GKLQPC 544 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i~i----------------d------gk~~~I 544 (996)
...+|..+||++||||||..+|.+-. +...-..|+|+.+++....+.- . .--+++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45689999999999999999998543 3334456888877764433210 0 012468
Q ss_pred EEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-CChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhHHHHHHHh-c
Q 001915 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELSS-I 621 (996)
Q Consensus 545 tfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~erv~~eL~~-~ 621 (996)
.|+|.||||-+.+.+..++...|++|||+++++. .++||.|++..+.-.++. +|++-||+|+.. .++..+...+ .
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS--RERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--HHHHHHHHHHHH
Confidence 8999999999999999999999999999999985 589999999998888876 999999999953 3333333322 2
Q ss_pred CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeee--------cCCCcEEEEEEEcC
Q 001915 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSKGPVATFILQNG 693 (996)
Q Consensus 622 gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~d--------kgrG~Vat~lV~~G 693 (996)
.|....|..+.|++++||..+.|||-|+++|.... .....+++.++..+|+.++-. +-+|-|+-+-+.+|
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I--ptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G 244 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI--PTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQG 244 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhC--CCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeee
Confidence 23344556678999999999999999999986432 223344555666777766533 33577888999999
Q ss_pred EeccCcEEEEcc
Q 001915 694 TLKKGDVVVCGE 705 (996)
Q Consensus 694 tLk~GD~VviG~ 705 (996)
.|+.||.|-+-+
T Consensus 245 ~l~vGDEIEIrP 256 (415)
T COG5257 245 VLRVGDEIEIRP 256 (415)
T ss_pred eEecCCeEEecC
Confidence 999999987754
No 150
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=6.5e-18 Score=171.42 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=110.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+|+|..++|||||+++|....+.....+ |.+..+....+.+++..+.+.||||||++.|..++...+..+|++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKS--TIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 4799999999999999999998777543333 33333333344456667789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|||+++....... .++..+. ..++|+|+++||+|+.+.. .+... .+... ..++++++||++|.|
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~~--------~~~~~~evSa~~~~~ 149 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAK-SFCDS--------LNIPFFETSAKQSIN 149 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHH-HHHHH--------cCCeEEEEeCCCCCC
Confidence 9999874332222 1222222 2357899999999986321 22222 22221 124799999999999
Q ss_pred hhhHHHHHHHHH
Q 001915 645 VDDLLETIMLVA 656 (996)
Q Consensus 645 IdEL~eaIl~la 656 (996)
++++|++|+...
T Consensus 150 i~~~f~~l~~~~ 161 (188)
T cd04125 150 VEEAFILLVKLI 161 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 151
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.1e-17 Score=163.16 Aligned_cols=157 Identities=24% Similarity=0.349 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc----------hHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAM 558 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~----------F~~m 558 (996)
++++|+++|++|+|||||+++|.+.... ....+++|++..... +..+ +..+.+|||||+.. |..+
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVP--FEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeE--EEEC--CeeEEEEECCCCccccchhccHHHHHHH
Confidence 3678999999999999999999976543 344556665532222 2223 34689999999633 2222
Q ss_pred H-HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 559 R-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 559 r-~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
. ...+..+|++++|+|++++...+....+..+...+.|+++++||+|+.... .+.+.+.+... +.. ....++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 152 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK-LPF---LDYAPI 152 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh-ccc---ccCCce
Confidence 2 234578999999999999888888777777777889999999999996542 22333333332 111 124689
Q ss_pred EEeccCCCCChhhHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIML 654 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~ 654 (996)
+++||+++.|++++++++..
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EEEeccCCCCHHHHHHHHHH
Confidence 99999999999999999864
No 152
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.77 E-value=4.3e-18 Score=177.42 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=111.2
Q ss_pred EcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecC
Q 001915 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD 576 (996)
Q Consensus 497 VGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAs 576 (996)
+|+.++|||||+.++....+.... ..|.++.++...+.+++..+.+.||||||++.|..++..+++.+|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~--~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 699999999999999976664332 346666666666666777889999999999999999999999999999999999
Q ss_pred CCCChhHH-HHHHHHHH--cCCCEEEEecccCCCCCChh-HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHH
Q 001915 577 DGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 577 dgv~~Qt~-E~I~~ak~--~~IPIIVVINKiDL~~a~~e-rv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaI 652 (996)
+....+.. .++..+.. .++|+|+|+||+|+...... ... .+... ..+.|++|||++|.||+++|++|
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRK--------KNLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHH--------cCCEEEEEeCCCCCCHHHHHHHH
Confidence 86544332 22232332 47899999999998532211 111 12111 23679999999999999999999
Q ss_pred HHHH
Q 001915 653 MLVA 656 (996)
Q Consensus 653 l~la 656 (996)
....
T Consensus 150 ~~~i 153 (200)
T smart00176 150 ARKL 153 (200)
T ss_pred HHHH
Confidence 7543
No 153
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=4.8e-18 Score=168.80 Aligned_cols=160 Identities=26% Similarity=0.277 Sum_probs=107.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++++|||||+++|.+..+.....+ |... .+...+.+++..+.+.||||||++.|..++..++..+|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP--TVFE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--cccc-ceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 5799999999999999999998776544333 2221 112334456667789999999999999888888899999999
Q ss_pred EEecCCCCChhHH-H-HHHHHHH--cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCC---------CCCCCCcEEEec
Q 001915 572 VVAADDGIRPQTN-E-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPE---------DWGGDIPMVQIS 638 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E-~I~~ak~--~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e---------~~gg~ipvVeIS 638 (996)
|+|+++....... + ++..+.. .++|+++++||+|+..... ....+........ ...+..++++||
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 156 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 9999874322222 1 1222222 4789999999999854211 1111110000000 001235799999
Q ss_pred cCCCCChhhHHHHHHHHH
Q 001915 639 ALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 639 AktGeGIdEL~eaIl~la 656 (996)
|++|.||+++|++|...+
T Consensus 157 a~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 157 AKTKEGVREVFEMATRAA 174 (175)
T ss_pred cccCcCHHHHHHHHHHHh
Confidence 999999999999997543
No 154
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.6e-18 Score=177.54 Aligned_cols=155 Identities=21% Similarity=0.175 Sum_probs=122.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|++++|||+|+.++....+..... .|.+|++....+..++..+.+++|||+|+++|..+...|++.|++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--STIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCcc--ceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 355799999999999999999999888876554 477777777777788999999999999999999999999999999
Q ss_pred EEEEEecCCCCChh----HHHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Q----t~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++||||+++..... |++.+......++|+++|+||+|+... ..++-.....++| +.|+++||++
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G---------~~F~EtSAk~ 158 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG---------IKFFETSAKT 158 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC---------CeEEEccccC
Confidence 99999999743322 344444444458999999999999541 2223333333333 6899999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|.||++.|-.|..
T Consensus 159 ~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 159 NFNIEEAFLSLAR 171 (207)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988764
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=3.5e-18 Score=165.78 Aligned_cols=147 Identities=25% Similarity=0.370 Sum_probs=107.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH------HHHHhh--hcCC
Q 001915 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA--RVTD 567 (996)
Q Consensus 496 IVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~------mr~rga--~~AD 567 (996)
|+|++|+|||||+++|.+.....+..+++|.+.....+. +++ ..+.||||||++.|.. ++..++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFK--LGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEe--eCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 589999999999999998776666777888776544443 333 5799999999987664 344555 4899
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
++|+|+|+.+. .+....+..+...++|+|+++||+|+.+... ......+... + ..+++++||++|.|++
T Consensus 77 ~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 77 LIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL------L--GVPVVPTSARKGEGID 146 (158)
T ss_pred EEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh------h--CCCeEEEEccCCCCHH
Confidence 99999999873 3334455566667899999999999964321 1112222221 1 2579999999999999
Q ss_pred hHHHHHHHHH
Q 001915 647 DLLETIMLVA 656 (996)
Q Consensus 647 EL~eaIl~la 656 (996)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (158)
T cd01879 147 ELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 156
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=5.5e-18 Score=169.52 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+++|||||+.++....+..... .++. ..+...+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~-~t~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYV-PTAF--DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-Ccee--eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 479999999999999999998776654332 2332 3344555566777889999999999999999989999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCCCCCCCCC
Q 001915 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 572 VVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~e~~gg~i 632 (996)
|||+++....+.. .++..+.. .++|+++++||+|+..... ++........ +..
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------~~~ 149 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI--------GAC 149 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh--------CCC
Confidence 9999986544332 23333333 4689999999999853210 1111111111 123
Q ss_pred cEEEeccCCCCChhhHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~ 654 (996)
++++|||++|.||+++|+.+++
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHh
Confidence 7999999999999999998864
No 157
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=5.8e-18 Score=172.60 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|..++|||||+++|....+. .. ..|.+.....+ +...+.+.+|||||++.|..++..+++.+|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~--~pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cc--cCCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 45579999999999999999999865553 22 23444333222 2345789999999999999999999999999
Q ss_pred EEEEEecCCCCChh-HHHHHHHH-H---HcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQ-TNEAIAHA-K---AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Q-t~E~I~~a-k---~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++..... ....+..+ . ..++|++|++||+|+++... +++...+ ++..... ..+.++++||++|
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~~~~~-~~~~~~~~Sa~~g 163 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSLRQ-RHWYIQSTCATSG 163 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---CccccCC-CceEEEeccCCCC
Confidence 99999999743222 12222222 1 13689999999999965432 2323222 2211111 1235778999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
+||+++|++|...
T Consensus 164 ~gv~e~~~~l~~~ 176 (181)
T PLN00223 164 EGLYEGLDWLSNN 176 (181)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999643
No 158
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=4.9e-18 Score=170.79 Aligned_cols=153 Identities=23% Similarity=0.254 Sum_probs=107.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|+++|++++|||||+++|....+.. . ..|.+.....+. + ....+.||||||++.|..++..++..+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIV--Y--KNIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEE--E--CCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 35789999999999999999998766542 2 234443333222 2 346899999999999999999999999999
Q ss_pred EEEEecCCCCChh-HHHHHH-HHH---HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQ-TNEAIA-HAK---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Q-t~E~I~-~ak---~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|+|+++..... ..+.+. .+. ..++|+++++||+|+.+. +.+++...+...... . ..+++++|||++|.
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~--~--~~~~~~~~SA~~g~ 162 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR--D--HTWHIQGCCALTGE 162 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc--C--CceEEEecccCCCC
Confidence 9999998753221 112222 222 246899999999999653 333333333211111 1 23579999999999
Q ss_pred ChhhHHHHHH
Q 001915 644 KVDDLLETIM 653 (996)
Q Consensus 644 GIdEL~eaIl 653 (996)
||+++|++|.
T Consensus 163 gi~e~~~~l~ 172 (174)
T cd04153 163 GLPEGLDWIA 172 (174)
T ss_pred CHHHHHHHHh
Confidence 9999999985
No 159
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=6.7e-18 Score=167.89 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=108.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+++|.+|+|||||+++|.+..+.....+ ++.+ .+.....+++..+.+.+|||||++.|..++..+++.+|++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDP-TIED--SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 5799999999999999999997766433222 2221 223344456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH----H-HHHHHHHcCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 572 VVAADDGIRPQTN----E-AIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 572 VVDAsdgv~~Qt~----E-~I~~ak~~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|+++....+.. + ..+.....++|+|+++||+|+..... +.... +.. .| +.++++++||++|.
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~------~~-~~~~~~~~SA~~~~ 150 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQ------QW-GNVPFYETSARKRT 150 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHH------Hc-CCceEEEeeCCCCC
Confidence 9999874322222 1 11222234789999999999854321 11111 111 12 13689999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
||+++|++|...
T Consensus 151 ~i~~~f~~i~~~ 162 (168)
T cd04177 151 NVDEVFIDLVRQ 162 (168)
T ss_pred CHHHHHHHHHHH
Confidence 999999999753
No 160
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1.2e-17 Score=159.88 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+++|||||+++|.+..+...... |.....+...+..++....+.+|||||++.|..+....+..+|++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999998776654333 33444444555555666789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCC--CC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKD--GA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~--~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++...... ..++..+.. .+.|+++++||+|+. .. ..+.+...... ..++++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~ 149 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE---------NGLLFFETSAKTGEN 149 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH---------cCCeEEEEecCCCCC
Confidence 999987432222 223333333 358999999999995 22 22333322222 136799999999999
Q ss_pred hhhHHHHHH
Q 001915 645 VDDLLETIM 653 (996)
Q Consensus 645 IdEL~eaIl 653 (996)
+++++++|.
T Consensus 150 i~~~~~~i~ 158 (159)
T cd00154 150 VEELFQSLA 158 (159)
T ss_pred HHHHHHHHh
Confidence 999999885
No 161
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=4.5e-18 Score=181.67 Aligned_cols=159 Identities=33% Similarity=0.407 Sum_probs=120.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
+|+|+||+|+|||||+++|+...... ....++|.+... ..+...+++++|||||||..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~----~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAV----ASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeee----EEEEECCEEEEEEeCCCccc
Confidence 58999999999999999997532111 012233333222 22234567899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CC--C-------
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--M------- 624 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl--~------- 624 (996)
|...+.++++.+|++|+|+|+.+++..++.+++..+...++|+|+++||+|+..++.+++..++... +. .
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 9999999999999999999999999999999999998899999999999999877766655554431 00 0
Q ss_pred -------------------------------CCCC---------------CCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 625 -------------------------------PEDW---------------GGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 625 -------------------------------~e~~---------------gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
.+.+ +.-+|+++.||.++.|++.|++.|...
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 0000 234688888999999999999998754
No 162
>PLN03118 Rab family protein; Provisional
Probab=99.77 E-value=1.1e-17 Score=173.56 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=110.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|+|+|++|+|||||+++|....+.. . ..|....+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-L--APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-c--CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 35799999999999999999999776532 2 22333333334444566667899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HH-HHHH----HcCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 570 VIVVAADDGIRPQTNE-AI-AHAK----AAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I-~~ak----~~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
|||||+++....+... .+ ..+. ..+.|+|+|+||+|+..... +........+ .++|+++||+
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~SAk 160 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH---------GCLFLECSAK 160 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999999854443332 12 1121 23578999999999954221 2222222211 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.|++++|++|....
T Consensus 161 ~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 161 TRENVEQCFEELALKI 176 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998554
No 163
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.77 E-value=7.8e-18 Score=180.85 Aligned_cols=155 Identities=20% Similarity=0.280 Sum_probs=112.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||+++|....+...+.+.+ . .++...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~--d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-E--DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-h--HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 379999999999999999999877754333322 2 2334444566777889999999999999999989999999999
Q ss_pred EEecCCCCChhHHH-HHHHHH------------HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 572 VVAADDGIRPQTNE-AIAHAK------------AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak------------~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
|||+++....+... ++..+. ..++|+|+|+||+|+... ..+++.+.+... ..+.++
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~--------~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD--------ENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc--------CCCEEE
Confidence 99999854332221 112221 136899999999999531 222322222211 135799
Q ss_pred EeccCCCCChhhHHHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~lae 657 (996)
++||++|.||+++|++|..++.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 164
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.1e-18 Score=173.78 Aligned_cols=156 Identities=23% Similarity=0.263 Sum_probs=121.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|..++|||||+.+++...+...+.+ |+++++-...+.+.+..+++++|||+|||+|..+...|++.+++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqA--TIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccc--eeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 3558999999999999999999999988766554 77777777777888999999999999999999999999999999
Q ss_pred EEEEEecCCCC-ChhHHHHHHHHHHcC----CCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGI-RPQTNEAIAHAKAAG----VPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv-~~Qt~E~I~~ak~~~----IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++.- ..++..++..+...+ +-+++|+||.||.+.. .++-.....++ ++.|+++||+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel---------~a~f~etsak 168 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL---------NAEFIETSAK 168 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh---------CcEEEEeccc
Confidence 99999999843 445555665555432 4478999999995421 11111111111 2579999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
.|.||.+||..|...
T Consensus 169 ~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAA 183 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999987643
No 165
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=6.2e-18 Score=166.49 Aligned_cols=152 Identities=25% Similarity=0.311 Sum_probs=107.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|.+|+|||||+++|.+..+.....+.+. + .+.......+..+.+.||||||++.|...+...+..+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-D--NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-e--eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 4799999999999999999998877433333222 2 222333445667789999999999988888888899999999
Q ss_pred EEecCCCCChhH--HHHHHHHHH--cCCCEEEEecccCCCCCChh--------------HHHHHHHhcCCCCCCCCCCCc
Q 001915 572 VVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGANPE--------------RVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 572 VVDAsdgv~~Qt--~E~I~~ak~--~~IPIIVVINKiDL~~a~~e--------------rv~~eL~~~gl~~e~~gg~ip 633 (996)
|||+++....+. .+++..+.. .++|+++|+||+|+...... ......... +..+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~ 149 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI--------GAIG 149 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh--------CCeE
Confidence 999987433322 122333332 35999999999999644321 111111221 1237
Q ss_pred EEEeccCCCCChhhHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~ 654 (996)
++++||++|.|+++++++|..
T Consensus 150 ~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 150 YMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEeecCCCCCHHHHHHHHhh
Confidence 999999999999999999863
No 166
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=9.7e-18 Score=175.21 Aligned_cols=154 Identities=17% Similarity=0.238 Sum_probs=109.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee-CCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
++|+|+|.+|+|||||+++|.+..+..... .|.+..++...+.+ ++..+.+.||||||++.|..++..+++.+|++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 689999999999999999999877654433 34444444444433 345678999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|||+++....... +++..+. ....|+||++||+|+.... .......+... + .++++++||++|.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~------~--~~~~~e~Sak~g~ 152 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD------L--GMKYIETSARTGD 152 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH------h--CCEEEEEeCCCCC
Confidence 99999884322221 1222222 2346789999999995421 11122222221 1 2679999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
||+++|++|...
T Consensus 153 ~v~e~f~~l~~~ 164 (211)
T cd04111 153 NVEEAFELLTQE 164 (211)
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 167
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.1e-17 Score=187.93 Aligned_cols=215 Identities=29% Similarity=0.417 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCC------------------ceeeeceEEEEEeeCCccccEEEEeCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG------------------ITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gG------------------iTqdI~a~~V~i~idgk~~~ItfIDTP 550 (996)
.|....+|+-|||+|||||...|+-...+...++. -.++|+..+--+.+++.++.++|+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 35578999999999999999998632222211110 012333334344456677899999999
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC--CCC
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM--PED 627 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~--~e~ 627 (996)
||++|+.-..|-+..+|.+|+|+|+..|+.+||+.+..-++..++||+-++||+|....++-++..++.+. ++. +..
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999877765555544331 110 000
Q ss_pred C-----------------------------------------------------------------------------CC
Q 001915 628 W-----------------------------------------------------------------------------GG 630 (996)
Q Consensus 628 ~-----------------------------------------------------------------------------gg 630 (996)
| |.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 0 34
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHHHHHhhh-------cCCCCCCcceEEEEe--ee-cCCCcEEEEEEEcCEeccCcE
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAG--LH-KSKGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~lael~elk-------~~p~r~~~g~Vies~--~d-kgrG~Vat~lV~~GtLk~GD~ 700 (996)
-.|+|+-||+++.||+.+++.++..+....-. ...+..+.|.|+++. .+ ++|-.++..+|.+|.+..|..
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMk 329 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMK 329 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCce
Confidence 57999999999999999999998776532211 122345788897765 33 678999999999999999998
Q ss_pred EEE
Q 001915 701 VVC 703 (996)
Q Consensus 701 Vvi 703 (996)
+..
T Consensus 330 v~h 332 (528)
T COG4108 330 VTH 332 (528)
T ss_pred eee
Confidence 754
No 168
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=8.1e-18 Score=188.42 Aligned_cols=156 Identities=23% Similarity=0.332 Sum_probs=113.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc-cchHHH-------H
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-EAFGAM-------R 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-E~F~~m-------r 559 (996)
.+..+|+++|++|+|||||+|+|.+..+. .+...++|++.....+ .+ .+.++.||||||+ +.+..+ .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~--~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGII--TL--KDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEE--Ee--CCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 45568999999999999999999988775 3456677776432222 22 3457999999996 333221 1
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
...+..+|++|+|+|+.+++......++..++..+.|.|+|+||+|+.......+...+... .....++++||
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~-------~~~~~i~~iSA 198 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN-------HPDSLLFPISA 198 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc-------CCCcEEEEEec
Confidence 13468999999999998877776666777777778899999999999654333333333322 12357999999
Q ss_pred CCCCChhhHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLV 655 (996)
Q Consensus 640 ktGeGIdEL~eaIl~l 655 (996)
++|.|+++|+++|...
T Consensus 199 ktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 199 LSGKNIDGLLEYITSK 214 (339)
T ss_pred cCccCHHHHHHHHHHh
Confidence 9999999999999754
No 169
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=6.7e-18 Score=173.64 Aligned_cols=157 Identities=25% Similarity=0.251 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|++|+|||||+++|....+.... ..++.+ .+...+.+.+..+.++||||||+..|..++..++..+|++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY-RRTVEE--MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-CCchhh--heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence 5899999999999999999987665322 222222 2333444556667899999999999999999999999999999
Q ss_pred EecCCCCChhHHH-----HHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 573 VAADDGIRPQTNE-----AIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 573 VDAsdgv~~Qt~E-----~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
||+++....+... .+......++|+|+++||+|+..... ........... .. ...+++++||++|.||+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---~~--~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---LD--WNCGFVETSAKDNENVL 152 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH---hh--cCCcEEEecCCCCCCHH
Confidence 9998854333221 11222225799999999999854211 11111111110 01 13579999999999999
Q ss_pred hHHHHHHHHHH
Q 001915 647 DLLETIMLVAE 657 (996)
Q Consensus 647 EL~eaIl~lae 657 (996)
++|++|.....
T Consensus 153 ~l~~~l~~~~~ 163 (198)
T cd04147 153 EVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHhh
Confidence 99999986543
No 170
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=1e-17 Score=166.53 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+|+|+.|+|||||+++|....+... .+.++.+ +.+...+.+..+.+.+|||||++.+..++..++..+|+++||
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPE---ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccc---eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 799999999999999999998776533 2222211 123333456678899999999998888888888999999999
Q ss_pred EecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCChh-HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 573 VAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 573 VDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~~e-rv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
||+++....+.. .++..++. .++|+++|+||+|+.+.... ....++... ...+....+++++||++|.|+++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI---MNEFREIETCVECSAKTLINVSE 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH---HHHHhcccEEEEeccccccCHHH
Confidence 999885544432 12233332 37899999999999653321 111111110 00011113699999999999999
Q ss_pred HHHHHHHH
Q 001915 648 LLETIMLV 655 (996)
Q Consensus 648 L~eaIl~l 655 (996)
+|+.+...
T Consensus 155 lf~~~~~~ 162 (166)
T cd01893 155 VFYYAQKA 162 (166)
T ss_pred HHHHHHHH
Confidence 99988754
No 171
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=1e-17 Score=165.07 Aligned_cols=152 Identities=25% Similarity=0.239 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhhc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGARV 565 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~~ 565 (996)
.|+|+|++|+|||||+++|.+.....+..+++|++.....+.. ++ ...+.||||||+.. +.....+.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~--~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV--DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc--CC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 5899999999999999999977665555566666544333322 22 24799999999632 22223344567
Q ss_pred CCeEEEEEecCCC-CChhHH-HHHHHHHH-----cCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 566 TDIAVIVVAADDG-IRPQTN-EAIAHAKA-----AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 566 ADiVILVVDAsdg-v~~Qt~-E~I~~ak~-----~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
+|++++|+|+++. ...+.. .+++.+.. .++|+++|+||+|+..... ......+.... ...+++++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 151 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL-------WGKPVFPI 151 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC-------CCCCEEEE
Confidence 9999999999986 233322 22233332 3689999999999854322 12222221110 13679999
Q ss_pred ccCCCCChhhHHHHHHH
Q 001915 638 SALKGEKVDDLLETIML 654 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~ 654 (996)
||+++.|+++++++|..
T Consensus 152 Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 152 SALTGEGLDELLRKLAE 168 (170)
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 99999999999999864
No 172
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=9.1e-18 Score=170.98 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+++|.+|+|||||+++|.+..+... .+|.+...+.+. + .++.+.+|||||++.+..++..++..+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~---~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH---QPTQHPTSEELA--I--GNIKFTTFDLGGHQQARRLWKDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc---CCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 5678999999999999999999997765421 234444433332 2 34679999999999999999999999999
Q ss_pred EEEEEecCCCCCh-hHHHHHHHH----HHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCC---CCCCCCCcEEEecc
Q 001915 569 AVIVVAADDGIRP-QTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP---EDWGGDIPMVQISA 639 (996)
Q Consensus 569 VILVVDAsdgv~~-Qt~E~I~~a----k~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~---e~~gg~ipvVeISA 639 (996)
+|+|+|+++.... ...+.+..+ ...++|+++++||+|++.. +.+++...+.-..... ........+++|||
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999874221 122222222 2257899999999999653 4555555443221110 01113457999999
Q ss_pred CCCCChhhHHHHHHH
Q 001915 640 LKGEKVDDLLETIML 654 (996)
Q Consensus 640 ktGeGIdEL~eaIl~ 654 (996)
++|+|++++++||..
T Consensus 168 ~~~~g~~~~~~wl~~ 182 (184)
T smart00178 168 VRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccCCChHHHHHHHHh
Confidence 999999999999963
No 173
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.76 E-value=6.2e-17 Score=200.09 Aligned_cols=120 Identities=28% Similarity=0.399 Sum_probs=97.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEe------------eCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVP------------VDG 539 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~------------idg 539 (996)
..+..+|+|+||+|||||||+++|+..... .....|+|.......+.+. ..+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345679999999999999999999743311 1123455655443333331 122
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
..+.++|+|||||.+|...+.++++.+|++|+|+|+.+|+..||..+++++...++|+|+++||||+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999996
No 174
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=1.6e-17 Score=166.46 Aligned_cols=158 Identities=17% Similarity=0.228 Sum_probs=110.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|++|+|||||+++|....+.....+.+. + . +...+.+++..+.+.+|||||++.|..++..++..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~-~-~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE-N-T-FSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh-h-h-EEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 5799999999999999999998776543433221 1 1 12223345556778999999999999999999999999999
Q ss_pred EEecCCCCChhHHHH-HHHH----HHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNEA-IAHA----KAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~-I~~a----k~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
|+|+++....+.... +..+ ...+.|+|+|+||+|+..... ......+.. .+ ..+++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 150 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE------SW--GAAFLESSARENEN 150 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 999998544333222 1222 224679999999999853211 111122221 11 25799999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 001915 645 VDDLLETIMLVAELQE 660 (996)
Q Consensus 645 IdEL~eaIl~lael~e 660 (996)
+++++++|........
T Consensus 151 v~~l~~~l~~~~~~~~ 166 (180)
T cd04137 151 VEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999987665443
No 175
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.76 E-value=9.6e-18 Score=160.83 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=106.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEE
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVV 573 (996)
|+|+|++|+|||||+++|.+..+.....+ |..+....+. . ....+.+|||||++.|..++..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999998876654443 3333333322 2 2367999999999999999999999999999999
Q ss_pred ecCCCCC-hhHHHHHHHHH----HcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 574 AADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 574 DAsdgv~-~Qt~E~I~~ak----~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
|+++... .+..+.+..+. ..++|+++++||+|+..... ..+...+ ++.. .....++++++||++|.|+++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM---NLKS-ITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh---Cccc-ccCCceEEEEEEeccCCChHH
Confidence 9987322 22222232221 25789999999999865322 2222222 2111 112346899999999999999
Q ss_pred HHHHHHH
Q 001915 648 LLETIML 654 (996)
Q Consensus 648 L~eaIl~ 654 (996)
++++|..
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999864
No 176
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=1.2e-17 Score=180.75 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch-----HH---HHHHhh
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-----GA---MRARGA 563 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-----~~---mr~rga 563 (996)
.|+++|++|+|||||+|+|.+.++. .+..+++|++.- ..+. ...+..+.||||||+... .. ....++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~---~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIH---TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEE---EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 5899999999999999999988765 567778888631 1221 122356999999995321 11 233566
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
..+|++++|+|+++..... ...+..+...+.|+|+|+||+|+.. .+.....+....- +....+++++||++|.
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~----~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI----LEDFKDIVPISALTGD 150 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh----hcCCCceEEEecCCCC
Confidence 8999999999999865554 4455666677899999999999952 3333322222110 1112379999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+++|+++|...
T Consensus 151 gi~~L~~~l~~~ 162 (270)
T TIGR00436 151 NTSFLAAFIEVH 162 (270)
T ss_pred CHHHHHHHHHHh
Confidence 999999998754
No 177
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.76 E-value=8.2e-18 Score=166.21 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-hHHHHHHhhhcCCeEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTDIAVI 571 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-F~~mr~rga~~ADiVIL 571 (996)
+|+++|.+|+|||||++++....+.....+ ++.. .+...+.+++..+.+.||||||++. +..+...+++.+|++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDP-NLES--LYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCC-ChHH--hceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence 489999999999999999987655432222 2211 2233344567777899999999985 45567778899999999
Q ss_pred EEecCCCCChhHH----HHHHHHH--HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 572 VVAADDGIRPQTN----EAIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 572 VVDAsdgv~~Qt~----E~I~~ak--~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+++....+.. ..+.... ..++|+|+|+||+|+... ..+......... ..+|+++||++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~ 148 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL---------GCLFFEVSAAED 148 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc---------CCEEEEeCCCCC
Confidence 9999986443322 2222222 237999999999998432 112222221111 257999999999
Q ss_pred -CChhhHHHHHHHH
Q 001915 643 -EKVDDLLETIMLV 655 (996)
Q Consensus 643 -eGIdEL~eaIl~l 655 (996)
.||+++|+.|...
T Consensus 149 ~~~v~~~f~~l~~~ 162 (165)
T cd04146 149 YDGVHSVFHELCRE 162 (165)
T ss_pred chhHHHHHHHHHHH
Confidence 5999999998753
No 178
>PLN03110 Rab GTPase; Provisional
Probab=99.76 E-value=1.4e-17 Score=174.38 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=115.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|+|+|++++|||||+++|....+..... .|..+.+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34689999999999999999999877654433 3444444445555677778899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|||||+++....+... ++..+.. .++|+|+|+||+|+.... ..+....+... ..++++++||++|.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~--------~~~~~~e~SA~~g~ 160 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK--------EGLSFLETSALEAT 160 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH--------cCCEEEEEeCCCCC
Confidence 9999998855443332 2233332 478999999999985321 12223333321 13689999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|++++|++|+..
T Consensus 161 ~v~~lf~~l~~~ 172 (216)
T PLN03110 161 NVEKAFQTILLE 172 (216)
T ss_pred CHHHHHHHHHHH
Confidence 999999998644
No 179
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.1e-17 Score=173.60 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=106.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH--------HHHHHhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG--------AMRARGA 563 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~--------~mr~rga 563 (996)
.+|+|+|.+|+|||||+++|.+..+.....+.++.+ .+...+.+++..+.++||||||++.|. ..+...+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRR--LYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccc--cceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 379999999999999999999887765444433333 333344456777889999999976542 1234557
Q ss_pred hcCCeEEEEEecCCCCChhHHH-HHHHHH------HcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 564 RVTDIAVIVVAADDGIRPQTNE-AIAHAK------AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E-~I~~ak------~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
..+|++|||||+++....+... ++..+. ..++|+|+|+||+|+.... .......+.... ..++|
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~ 151 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKS-------WKCGY 151 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHh-------cCCcE
Confidence 8999999999999854333222 222222 2468999999999995421 111122221111 13789
Q ss_pred EEeccCCCCChhhHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~la 656 (996)
+++||++|.||++||+.++...
T Consensus 152 ~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 152 LECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987543
No 180
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.3e-17 Score=166.84 Aligned_cols=153 Identities=23% Similarity=0.256 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|.+++|||||+++|.+. +... ...|.+... ..+.+ ..+.+++|||||++.|..++..++..+|++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~--~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK--VAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc--ccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999865 3222 223433322 22222 457899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC----
Q 001915 573 VAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG---- 642 (996)
Q Consensus 573 VDAsdgv~~Q-t~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG---- 642 (996)
||+++....+ ....+..+.. .++|+++++||+|+.+.. ..++...+....+. ...+..+++++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~-~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV-NENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc-CCCCceEEEEEeEceeCCCCc
Confidence 9998853222 2223333322 478999999999997644 44444443322221 12233467899999998
Q ss_pred --CChhhHHHHHH
Q 001915 643 --EKVDDLLETIM 653 (996)
Q Consensus 643 --eGIdEL~eaIl 653 (996)
.||++.|+||.
T Consensus 153 ~~~g~~~~~~wl~ 165 (167)
T cd04161 153 IDPSIVEGLRWLL 165 (167)
T ss_pred cccCHHHHHHHHh
Confidence 89999999985
No 181
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=3.4e-18 Score=172.47 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=105.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc------hHHHHHHhh--
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA------FGAMRARGA-- 563 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~------F~~mr~rga-- 563 (996)
.+|+++|.||+|||||+|+|.+.+...+..+|+|.+.....+.+ .+..+.|+||||.-. -..+...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----GDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----TTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----cCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 37999999999999999999999988899999999875555543 236799999999311 122233333
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
...|++|+|+|+++ ..+......++.+.++|+|+|+||+|+.... ..--...+.+. + .+|++++||++|
T Consensus 77 ~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~------L--g~pvi~~sa~~~ 146 (156)
T PF02421_consen 77 EKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSER------L--GVPVIPVSARTG 146 (156)
T ss_dssp TSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHH------H--TS-EEEEBTTTT
T ss_pred cCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHH------h--CCCEEEEEeCCC
Confidence 68999999999987 4556667778888999999999999983211 11112222221 1 378999999999
Q ss_pred CChhhHHHHH
Q 001915 643 EKVDDLLETI 652 (996)
Q Consensus 643 eGIdEL~eaI 652 (996)
+|+++|+++|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 9999999876
No 182
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.9e-17 Score=192.75 Aligned_cols=152 Identities=26% Similarity=0.423 Sum_probs=116.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--------hHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--------F~~mr~ 560 (996)
+.++|+|+|.+|+|||||+|+|.+.... ....+|+|++.-.+.+. +. +..+.||||||++. |.....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~--~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE--WN--GRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE--EC--CcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 4589999999999999999999987653 56677888875444332 33 35699999999762 444455
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
.++..+|++|+|||++++......+++..++..++|+|+|+||+|+.....+ ..++...++ -..++|||+
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~~~g~--------~~~~~iSA~ 182 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALWSLGL--------GEPHPVSAL 182 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHHhcCC--------CCeEEEEcC
Confidence 6789999999999999998887777888888889999999999998643221 122222222 134799999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.||++||++|...
T Consensus 183 ~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 183 HGRGVGDLLDAVLAA 197 (472)
T ss_pred CCCCcHHHHHHHHhh
Confidence 999999999998754
No 183
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=1.2e-17 Score=165.58 Aligned_cols=154 Identities=25% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.. ...|.++....+. ++ +..+.+|||||+..|..++..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~--~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQ--SD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999998765432 1224333333333 23 46799999999999999999999999999
Q ss_pred EEEEecCCCCCh-hHH----HHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRP-QTN----EAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~-Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
++|+|+++.... ... ..+......++|+++++||+|+.... .+.+...+....+. ....+++++||++|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLR----DRTWHIQACSAKTGE 161 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccC----CCeEEEEEeECCCCC
Confidence 999999873221 111 12222233579999999999985433 23333332211111 112468899999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
|++++|+||..
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 184
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=5.2e-18 Score=179.94 Aligned_cols=116 Identities=33% Similarity=0.430 Sum_probs=94.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEeeC------CccccEEEEeC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVD------GKLQPCVFLDT 549 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~id------gk~~~ItfIDT 549 (996)
.+|+|+||++||||||+++|+..... .....|+|.......+.+... +..+.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999743211 112346665554433333221 34678999999
Q ss_pred CCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC
Q 001915 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 550 PGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
|||+.|...+..+++.+|++|||||+.++++.++.++++.+...++|+|+++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999988899999999999985
No 185
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=2.5e-17 Score=167.93 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=106.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|++++|||||++++....+.. .. .|.+.....+ +...+.+.+|||||++.|..++..+++.+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~--~T~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TI--PTIGFNVETV----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CccccceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 345789999999999999999997655532 22 2433333222 2345789999999999999999999999999
Q ss_pred EEEEEecCCCCCh-hHHHHHH-HHH---HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRP-QTNEAIA-HAK---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~-Qt~E~I~-~ak---~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++.-.. ...+.+. .+. ..++|+|||+||+|+.+.. .+++...+ ++... ....+.++++||++|
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l---~~~~~-~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL---GLHSV-RQRNWYIQGCCATTA 163 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh---CCCcc-cCCcEEEEeeeCCCC
Confidence 9999999873211 1122222 222 1368999999999996532 23332322 22100 112345779999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.|++++|++|..
T Consensus 164 ~gv~e~~~~l~~ 175 (182)
T PTZ00133 164 QGLYEGLDWLSA 175 (182)
T ss_pred CCHHHHHHHHHH
Confidence 999999999974
No 186
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=2.4e-17 Score=174.73 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=110.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|..++|||||+.+|....+...+.+.+ .. .|...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi--~~-~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTV--FE-NYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc--cc-ceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 579999999999999999999877765444433 22 234455667888899999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHH-HHHH--HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCC---------CCCCCCCcEEEec
Q 001915 572 VVAADDGIRPQTN-EAI-AHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQIS 638 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I-~~ak--~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~---------e~~gg~ipvVeIS 638 (996)
|||+++....+.. ..| ..+. ..++|+|+|+||+|+.... .....+......+ ..-.+.++|++||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~--~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~S 156 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL--ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECS 156 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch--hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcC
Confidence 9999985433322 112 1122 2478999999999995421 0111111100000 0001235899999
Q ss_pred cCCCCC-hhhHHHHHHHH
Q 001915 639 ALKGEK-VDDLLETIMLV 655 (996)
Q Consensus 639 AktGeG-IdEL~eaIl~l 655 (996)
|+++.| |+++|+.+...
T Consensus 157 Ak~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 157 SRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCcCCcCHHHHHHHHHHH
Confidence 999985 99999998765
No 187
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=1.8e-17 Score=166.34 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
++..+|+++|.+|+|||||+++|.+..+. ..+.+ |.+..+....+.+++..+.+.+|||+|++.|..++..++..+|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~--T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP--TIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC--ccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 35578999999999999999999988776 43333 3332232223445666678999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHH-HcCCCEEEEecccCCCCCChh--HHHHHHHh-cCCCCCCCCCCCcEEEeccCCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAK-AAGVPIVIAINKIDKDGANPE--RVMQELSS-IGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak-~~~IPIIVVINKiDL~~a~~e--rv~~eL~~-~gl~~e~~gg~ipvVeISAktG 642 (996)
++|||+|+++...... .+++..+. ..++|+++|+||+|+...... ....++.. +++ ..++++||++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 151 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL--------PPPLHFSSKLG 151 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCC--------CCCEEEEeccC
Confidence 9999999987532222 12233322 236899999999999532210 11122222 111 23689999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.|++++|+.|...
T Consensus 152 ~~v~~lf~~l~~~ 164 (169)
T cd01892 152 DSSNELFTKLATA 164 (169)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999998764
No 188
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.75 E-value=1.8e-17 Score=175.46 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|.+++|||||+++|....+.. .. .|....++.... ..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~--~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TV--STVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CC--CccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 379999999999999999999887752 22 344333333222 34679999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHH---HcCCCEEEEecccCCCCCC----------------------hhHHHHHHHhcCC--
Q 001915 572 VVAADDGIRPQTNE-AIAHAK---AAGVPIVIAINKIDKDGAN----------------------PERVMQELSSIGL-- 623 (996)
Q Consensus 572 VVDAsdgv~~Qt~E-~I~~ak---~~~IPIIVVINKiDL~~a~----------------------~erv~~eL~~~gl-- 623 (996)
|||+++........ .+..+. ..++|+|+|+||+|+.... .++........+.
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~ 153 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK 153 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence 99999854433332 222222 2468999999999995410 1222222222210
Q ss_pred -CCCCC--CCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 624 -MPEDW--GGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 624 -~~e~~--gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
..+.. -.+++|++|||++|.||+++|+.|+...
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00000 1236899999999999999999988544
No 189
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=2.7e-17 Score=178.67 Aligned_cols=127 Identities=33% Similarity=0.501 Sum_probs=95.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccccc---------CCce---------eeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEA---------GGIT---------QGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~---------gGiT---------qdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
.+|+|+||+|+|||||+++|+......... +.++ +++++......+++.++.++|||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 689999999999999999998532211111 1111 1122222223345567889999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHH
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQEL 618 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL 618 (996)
.|......+++.+|++|+|+|+++++..++..+++.+...++|+++++||+|+..++..++..++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l 147 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEI 147 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHH
Confidence 99998888999999999999999999999988888888889999999999999776654443333
No 190
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=9.4e-18 Score=171.27 Aligned_cols=153 Identities=21% Similarity=0.186 Sum_probs=121.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
-+++.|||+.++|||+||.+++..+|..... .|.++.+..-.+.++++.+++++|||+|||.|...+..||+.+.++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3689999999999999999999888875444 56666666666677999999999999999999999999999999999
Q ss_pred EEEecCCCCCh----hHHHHHHHHHHcCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~----Qt~E~I~~ak~~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
||||++..... +|.+.+++....++-+++++||+||.. .+.++-.....++++ .++++||++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL---------ifmETSakt~~ 154 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL---------IFMETSAKTAE 154 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc---------eeehhhhhhhh
Confidence 99999974433 334444444445777999999999953 234555555566664 57899999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
||+|.|..+..
T Consensus 155 ~VEEaF~nta~ 165 (216)
T KOG0098|consen 155 NVEEAFINTAK 165 (216)
T ss_pred hHHHHHHHHHH
Confidence 99999987753
No 191
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.75 E-value=2.1e-17 Score=160.01 Aligned_cols=150 Identities=22% Similarity=0.287 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+|+|++|+|||||+++|.+..+..... .++. ..+...+.+++..+.+.+|||||++.|..++...+..+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYD-PTIE--DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcC-CChh--HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999776443332 2332 23334444455567899999999999999999999999999999
Q ss_pred EecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 573 VAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 573 VDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|.++...... ...+..+.. .++|+++++||+|+.... .+.+.......+ .+++++||++|.|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 148 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---------CPFIETSAKDNIN 148 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---------CcEEEeccCCCCC
Confidence 99987432211 222222221 368999999999986421 222222322221 5799999999999
Q ss_pred hhhHHHHHHH
Q 001915 645 VDDLLETIML 654 (996)
Q Consensus 645 IdEL~eaIl~ 654 (996)
+++++++|..
T Consensus 149 i~~l~~~l~~ 158 (160)
T cd00876 149 IDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 192
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.75 E-value=8.7e-18 Score=194.27 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=145.6
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhcccCC
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~~R 490 (996)
.+++++|.+.++.....+.+.|+.+ .+.+...||++.-.....++... +..-...++.++ ... .......
T Consensus 133 ~~A~~~l~G~ls~~~~~~r~~l~~~--~a~iea~iDf~ee~~~~~~~~~~-l~~~~~~l~~ll------~~~-~~~~~~~ 202 (442)
T TIGR00450 133 DIALNKLAGELDQKIEAIRKSLLQL--LAQVEVNIDYEEDDDEQDSLNQL-LLSIIAELKDIL------NSY-KLEKLDD 202 (442)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHH--HHHeeEECCcCCCCccHHHHHHH-HHHHHHHHHHHH------HHH-HHHHhhc
Confidence 4778899999999999999999887 66666677776511000000000 000011112222 222 2245567
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH--------HHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRAR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~--------mr~r 561 (996)
.++|+|+|++|+|||||+|+|.+... .++..+|+|+++....+. ++ ++.++||||||+..+.. ....
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~--~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFE--LN--GILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEE--EC--CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 88999999999999999999998754 466788999885433333 33 45789999999754432 1235
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++..+|++|+|+|++++...... ++..+...++|+|+|+||+|+...+. ..+.. .+ ..+++++||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~------~~--~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVS------SK--VLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhh------hc--CCceEEEEEec
Confidence 67899999999999987665554 55555556899999999999964311 11111 11 24689999998
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
.||+++++.|...
T Consensus 346 -~gI~~~~~~L~~~ 358 (442)
T TIGR00450 346 -LKIKALVDLLTQK 358 (442)
T ss_pred -CCHHHHHHHHHHH
Confidence 6999999988654
No 193
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=2.3e-17 Score=166.90 Aligned_cols=148 Identities=20% Similarity=0.338 Sum_probs=107.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFG 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v--a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~ 556 (996)
.+.++|+|+|++|+|||||+++|++..+ ......++|+++..+.. + ..+.||||||+ +.|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~---~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----N---DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----C---CcEEEEeCCCCccccCChhHHHHHH
Confidence 5778999999999999999999998752 23455667877654432 2 25999999994 3355
Q ss_pred HHHHHhhh---cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCC
Q 001915 557 AMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 557 ~mr~rga~---~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~i 632 (996)
.+...++. .+|++|+|+|+++++..++.+.++.+...++|+++++||+|+.... .+....++... + ..++...
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~-l--~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKA-L--KKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHH-H--hhccCCC
Confidence 55545553 4689999999999999888888888888899999999999996422 12222222221 1 1112345
Q ss_pred cEEEeccCCCCChh
Q 001915 633 PMVQISALKGEKVD 646 (996)
Q Consensus 633 pvVeISAktGeGId 646 (996)
++|++||++|+||+
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999984
No 194
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=1.6e-17 Score=166.06 Aligned_cols=151 Identities=20% Similarity=0.243 Sum_probs=106.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEE
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVV 573 (996)
|+++|.+++|||||+++|.+..+..... .|.+... .. +++....+.||||||++.|..++..+++.+|++|+||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~--pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV--PTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc--ccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 7899999999999999999776543332 2333322 22 3445678999999999999999999999999999999
Q ss_pred ecCCCCChh-HHHHHHHHH--HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC------CC
Q 001915 574 AADDGIRPQ-TNEAIAHAK--AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK------GE 643 (996)
Q Consensus 574 DAsdgv~~Q-t~E~I~~ak--~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt------Ge 643 (996)
|+++..... ..+.+..+. ..++|+++|+||+|+.... ...+...+....+.. . ..+.++++||++ ++
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~Sa~~~~s~~~~~ 152 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-G--RRWILQGTSLDDDGSPSRME 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-C--CceEEEEeeecCCCChhHHH
Confidence 998854222 222233332 2579999999999996543 233332322222211 1 236788899888 99
Q ss_pred ChhhHHHHHH
Q 001915 644 KVDDLLETIM 653 (996)
Q Consensus 644 GIdEL~eaIl 653 (996)
||+++|+.++
T Consensus 153 ~v~~~~~~~~ 162 (164)
T cd04162 153 AVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 195
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=2.1e-17 Score=179.85 Aligned_cols=155 Identities=28% Similarity=0.421 Sum_probs=117.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC-ccc-------hHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-HEA-------FGAMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG-hE~-------F~~mr 559 (996)
.+.-.|+|+|.||+|||||+|+|++.+++ .+..+.+|++. +..-+..+..++.|+|||| |+. +....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~----I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----IRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh----eeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 35567999999999999999999999987 67788888874 2222233467899999999 322 11222
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
...+..+|+++||+|+++++.+.+...++.++..+.|+|+++||+|+..... ....+.+.... ....++++
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-------~f~~ivpi 152 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-------PFKEIVPI 152 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-------CcceEEEe
Confidence 3455889999999999999999999889998887889999999999854332 22222222211 12479999
Q ss_pred ccCCCCChhhHHHHHHH
Q 001915 638 SALKGEKVDDLLETIML 654 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~ 654 (996)
||++|.|++.|++.|..
T Consensus 153 SA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 153 SALKGDNVDTLLEIIKE 169 (298)
T ss_pred eccccCCHHHHHHHHHH
Confidence 99999999999998863
No 196
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=4.2e-17 Score=154.40 Aligned_cols=151 Identities=28% Similarity=0.377 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+++|++|+|||||+++|....+.....+++|.+.....+. +++..+.+.+|||||+..|..++......++.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIE--EDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEE--ECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 6899999999999999999998876666666777665443333 34444789999999999999888888888888888
Q ss_pred EEecCCCC-------ChhHHHHHHHHHHcCCCEEEEecccCCCCCChh-HHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 572 VVAADDGI-------RPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 572 VVDAsdgv-------~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~e-rv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
++|....+ ..+.......+. .+.|+++++||+|+...... .....+... +..+++++||++|.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--------~~~~~~~~sa~~~~ 150 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL--------NGEPIIPLSAETGK 150 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc--------cCCceEEeecCCCC
Confidence 88876542 122222333332 28899999999999654322 122222222 12569999999999
Q ss_pred ChhhHHHHHH
Q 001915 644 KVDDLLETIM 653 (996)
Q Consensus 644 GIdEL~eaIl 653 (996)
|+.+++++|.
T Consensus 151 gv~~~~~~l~ 160 (161)
T TIGR00231 151 NIDSAFKIVE 160 (161)
T ss_pred CHHHHHHHhh
Confidence 9999999873
No 197
>PLN03108 Rab family protein; Provisional
Probab=99.74 E-value=5.1e-17 Score=169.37 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+|+|++++|||||+++|....+.....+ |....+....+.+++..+.+.+|||||++.|..++..++..+|++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 47899999999999999999998776543333 3333333333445666678999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|+|+++....+.. .++..+. ..++|+|+++||+|+... ..+...+....+ .++++++||+++.
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~ 154 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH---------GLIFMEASAKTAQ 154 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999875433332 2222222 246899999999999542 222222222222 2579999999999
Q ss_pred ChhhHHHHHHHHH
Q 001915 644 KVDDLLETIMLVA 656 (996)
Q Consensus 644 GIdEL~eaIl~la 656 (996)
||+++|+++....
T Consensus 155 ~v~e~f~~l~~~~ 167 (210)
T PLN03108 155 NVEEAFIKTAAKI 167 (210)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987543
No 198
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.74 E-value=4.7e-17 Score=159.51 Aligned_cols=153 Identities=25% Similarity=0.387 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++|+.++|||||+++|.+..+.....+ |.+...+...+.+++..+.+.||||+|++.|..++...+..+|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIP--TIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSET--TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999998876544333 444556666667778888999999999999999999999999999999
Q ss_pred EecCCCCChh----HHHHHHHHHHcCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 573 VAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 573 VDAsdgv~~Q----t~E~I~~ak~~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
+|.++..... +...+......+.|++|++||.|+.. ...++.......+ ..+|+++||+++.||
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL---------GVPYFEVSAKNGENV 149 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT---------TSEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHh---------CCEEEEEECCCCCCH
Confidence 9998743222 22222222223588999999999854 1223333333333 268999999999999
Q ss_pred hhHHHHHHHHH
Q 001915 646 DDLLETIMLVA 656 (996)
Q Consensus 646 dEL~eaIl~la 656 (996)
.++|..++...
T Consensus 150 ~~~f~~~i~~i 160 (162)
T PF00071_consen 150 KEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 199
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=5.2e-17 Score=156.49 Aligned_cols=145 Identities=23% Similarity=0.340 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH--------HHHHh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARG 562 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~--------mr~rg 562 (996)
.+|+++|++|+|||||+++|.+.... ....+++|++.....+ .+ .+..+++|||||+..+.. .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESI--DI--GGIPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEE--Ee--CCEEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 57999999999999999999977653 3455677766433332 22 245799999999765532 22345
Q ss_pred hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+..+|++++|+|+++.........+.. ..+.|+++++||+|+...... .......+++++||+++
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCC
Confidence 689999999999998665555544443 467999999999999643221 01112468999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.|+++|+++|...
T Consensus 143 ~~v~~l~~~l~~~ 155 (157)
T cd04164 143 EGLDELKEALLEL 155 (157)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998653
No 200
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=3.5e-17 Score=168.16 Aligned_cols=150 Identities=25% Similarity=0.303 Sum_probs=102.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc---------hHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~---------F~~mr~ 560 (996)
.-++|+|+|++|||||||+++|.+..+......+.|.+.....+. +.+ ...+.||||||+.. |....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLR--LPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEE--ecC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 347999999999999999999998775554445556554433333 222 23799999999722 22221
Q ss_pred HhhhcCCeEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
..+..+|++++|+|+++....... +.+..+...++|+++|+||+|+....... ..+ .....++++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~~---------~~~~~~~~~ 184 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ERL---------EAGRPDAVF 184 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HHh---------hcCCCceEE
Confidence 235689999999999986554432 22222223468999999999995432211 111 112467999
Q ss_pred eccCCCCChhhHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIML 654 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~ 654 (996)
+||++|.|+++++++|..
T Consensus 185 ~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 185 ISAKTGEGLDELLEAIEE 202 (204)
T ss_pred EEcCCCCCHHHHHHHHHh
Confidence 999999999999999863
No 201
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=4.1e-17 Score=186.35 Aligned_cols=149 Identities=25% Similarity=0.429 Sum_probs=117.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc--------cchHHHHHHhh
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------EAFGAMRARGA 563 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh--------E~F~~mr~rga 563 (996)
+|+|+|++|+|||||+|+|.+.... ....+|+|++.....+. ++ +..+.||||||+ +.+..+...++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~--~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAE--WG--GREFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEE--EC--CeEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 4899999999999999999987654 55677888876444433 23 356999999996 44555666778
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
..+|++++|+|+.++....+.+.+..++..++|+|+|+||+|+..... ...++...++ .+++++||++|.
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~lg~--------~~~~~vSa~~g~ 146 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSLGF--------GEPIPISAEHGR 146 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhcCC--------CCeEEEeCCcCC
Confidence 999999999999999999998888889888999999999999864322 2223333332 368999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+++|++++...
T Consensus 147 gv~~ll~~i~~~ 158 (429)
T TIGR03594 147 GIGDLLDAILEL 158 (429)
T ss_pred ChHHHHHHHHHh
Confidence 999999998644
No 202
>PTZ00416 elongation factor 2; Provisional
Probab=99.73 E-value=3.4e-16 Score=193.34 Aligned_cols=119 Identities=29% Similarity=0.396 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEee------CCccccEEE
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPV------DGKLQPCVF 546 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~i------dgk~~~Itf 546 (996)
.+..+|+|+||+|||||||+++|+..... .....|+|.+.+...+.+.. .+.++.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 45569999999999999999999853211 11234566654443433321 122567999
Q ss_pred EeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC
Q 001915 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 547 IDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
+|||||..|......+++.+|++|+|+|+.+|+..|+..+++++...++|+|+++||||+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 203
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=5.4e-17 Score=168.29 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=101.7
Q ss_pred CEEEEEcCCCCCHHHHHH-HHHcCCccc---cccCCceee-eceEEEE--------EeeCCccccEEEEeCCCccchHHH
Q 001915 492 PVLTIMGHVDHGKTTLLD-HIRKTKVAA---AEAGGITQG-IGAYKVQ--------VPVDGKLQPCVFLDTPGHEAFGAM 558 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLn-rL~~s~va~---se~gGiTqd-I~a~~V~--------i~idgk~~~ItfIDTPGhE~F~~m 558 (996)
.+|+++|+.++|||||+. ++.+..+.. ......|.. +..|... ..+++..+.+.||||+|++. .+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KD 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hh
Confidence 589999999999999996 555443321 111122332 1222221 13567788999999999876 35
Q ss_pred HHHhhhcCCeEEEEEecCCCCChhHHH--HHHHHHH--cCCCEEEEecccCCCCCC----------------------hh
Q 001915 559 RARGARVTDIAVIVVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGAN----------------------PE 612 (996)
Q Consensus 559 r~rga~~ADiVILVVDAsdgv~~Qt~E--~I~~ak~--~~IPIIVVINKiDL~~a~----------------------~e 612 (996)
+..+++.+|++|||||+++....+... ++..++. .++|+|+|+||+||.... .+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 666889999999999999865444331 2233332 468999999999985321 11
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 613 rv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+.. +++. .+ .++|++|||++|.||+++|+.++.+
T Consensus 161 e~~-~~a~------~~--~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 161 TGR-AVAK------EL--GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHH-HHHH------Hh--CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 1111 11 2589999999999999999998754
No 204
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=5.9e-17 Score=185.70 Aligned_cols=149 Identities=27% Similarity=0.417 Sum_probs=115.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--------hHHHHHHh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRARG 562 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--------F~~mr~rg 562 (996)
++|+|+|++|+|||||+|+|.+.+.. ....+++|++.....+. +++ ..+.||||||++. +......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~--~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAE--WLG--REFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEE--ECC--cEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 68999999999999999999987653 56677888876544443 333 6899999999887 22334456
Q ss_pred hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+..+|++|+|+|+.++......+.+..++..++|+|+|+||+|+.. .+....++...++ ..++++||++|
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~--~~~~~~~~~~lg~--------~~~~~iSa~~g 147 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD--EEADAYEFYSLGL--------GEPYPISAEHG 147 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc--chhhHHHHHhcCC--------CCCEEEEeeCC
Confidence 7899999999999999888888888888888999999999999753 1222223322221 24799999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.|+++|+++|..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999875
No 205
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=3.2e-17 Score=158.19 Aligned_cols=133 Identities=25% Similarity=0.328 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc-----cchHHHHHHhhhcCC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----EAFGAMRARGARVTD 567 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-----E~F~~mr~rga~~AD 567 (996)
+|+++|++|+|||||+++|.+..+. . ..|.. +. +. ..+|||||+ +.|..+. ..++.+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~--~~t~~-----~~--~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--Y--KKTQA-----VE--YN-----DGAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--c--cccee-----EE--Ec-----CeeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 7999999999999999999876542 1 12322 11 11 168999997 2344443 3578999
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
++|+|+|++++...+...++.. ...|+|+++||+|+.... .+.....+...+ ..+++++||++|.|+
T Consensus 65 ~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 65 VIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAG--------AEPIFEISSVDEQGL 133 (142)
T ss_pred EEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcC--------CCcEEEEecCCCCCH
Confidence 9999999998776665443332 245999999999995422 122222222222 247999999999999
Q ss_pred hhHHHHHH
Q 001915 646 DDLLETIM 653 (996)
Q Consensus 646 dEL~eaIl 653 (996)
+++|++|.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 206
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=2.8e-17 Score=171.48 Aligned_cols=115 Identities=36% Similarity=0.525 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc-------------------ccCCceeeeceEEEEEee-CCccccEEEEeCCCc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAA-------------------EAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGH 552 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~s-------------------e~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGh 552 (996)
+|+|+||+|||||||+++|+....... ...|+|.+.....+.+.- ++..+.++|||||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999985432211 123444443333332221 345678999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
+.|...+..++..+|++|+|||+.++...++.++++.+...++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999988888888787777789999999999984
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=5.1e-17 Score=176.92 Aligned_cols=140 Identities=31% Similarity=0.338 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
+|+|+||+|||||||+++|+..... .....|+|++.....+. ..++.++|||||||..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~----~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF----WKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE----ECCEEEEEEECCCcHH
Confidence 5899999999999999999732110 11244666665444433 3457899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCCc
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIP 633 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~ip 633 (996)
|...+.++++.+|++|+|+|+.+++..++..++..+...++|+|+++||+|+.+++.+++..++... +.. ....
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~-----~~~~ 151 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN-----PVPL 151 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC-----ceEE
Confidence 9999999999999999999999999999999999999999999999999999887777776666653 211 1134
Q ss_pred EEEeccCC
Q 001915 634 MVQISALK 641 (996)
Q Consensus 634 vVeISAkt 641 (996)
++|+||..
T Consensus 152 ~~Pisa~~ 159 (270)
T cd01886 152 QLPIGEED 159 (270)
T ss_pred EeccccCC
Confidence 67888763
No 208
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.72 E-value=1.8e-16 Score=166.97 Aligned_cols=155 Identities=20% Similarity=0.220 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhh-cCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR-VTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~-~ADiVI 570 (996)
++|+++|.+|+|||||+++|....+..... .+|.....+...+.+++....+.||||||++. ..+..++. .+|++|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCc-CCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEE
Confidence 479999999999999999998766541111 12322233444455566778899999999983 33444556 899999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|||+++...... .+++..+.. .++|+|+|+||+|+..... ......+... + .++++++||++|.
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~------~--~~~~~e~SA~~~~ 149 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV------F--DCKFIETSAGLQH 149 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH------c--CCeEEEecCCCCC
Confidence 9999998543322 222333322 4689999999999854321 1111122211 1 2579999999999
Q ss_pred ChhhHHHHHHHHHH
Q 001915 644 KVDDLLETIMLVAE 657 (996)
Q Consensus 644 GIdEL~eaIl~lae 657 (996)
||+++|++|..+..
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999986543
No 209
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=1.3e-16 Score=173.75 Aligned_cols=159 Identities=26% Similarity=0.372 Sum_probs=112.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--------hHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--------F~~mr 559 (996)
.+.-.|+|+|++|+|||||+|+|.+..+. .+..+.+|++.. ..+ +......+.||||||... +....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~~i---~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-RGI---VTEDDAQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-EEE---EEcCCceEEEEECCCCCCchhHHHHHHHHHH
Confidence 35567999999999999999999988765 445556665531 111 112336899999999533 22333
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
...+..+|++++|+|+++.........+..+...+.|+++|+||+|+.. +.+.....+..+.- ..+..+++++||
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~----~~~~~~i~~iSA 153 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK-DKEELLPLLEELSE----LMDFAEIVPISA 153 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC-CHHHHHHHHHHHHh----hCCCCeEEEecC
Confidence 4566899999999999997777777777777777899999999999963 12222222222110 012357999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.|+++|+++|....
T Consensus 154 ~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 154 LKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999987543
No 210
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=1.1e-16 Score=180.29 Aligned_cols=149 Identities=28% Similarity=0.334 Sum_probs=108.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc---------cchHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh---------E~F~~mr~ 560 (996)
..++|+|+|.+|+|||||+|+|.+..+......++|.+.....+.+ . .+..+.||||||. +.|...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~--~-~~~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL--P-DGGEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe--C-CCceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 4589999999999999999999988776677788898876555544 2 2357999999996 3444433
Q ss_pred HhhhcCCeEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
..+..+|++|+|+|+++....... +.+..+...++|+|+|+||+|+... ..+. .+.. ...++++
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~-~~~~---------~~~~~i~ 331 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIE-RLEE---------GYPEAVF 331 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHH-HHHh---------CCCCEEE
Confidence 357899999999999986544332 2233333347899999999999532 2221 1111 1136899
Q ss_pred eccCCCCChhhHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIML 654 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~ 654 (996)
|||++|.||++|+++|..
T Consensus 332 iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEccCCCCHHHHHHHHHh
Confidence 999999999999999864
No 211
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=2.8e-16 Score=151.29 Aligned_cols=156 Identities=26% Similarity=0.356 Sum_probs=107.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc-ccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH--------HHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG--------AMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~s-e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~--------~mr~ 560 (996)
+..+|+++|.+|+|||||+++|.+..+... ....+|... ...........+.+|||||..... ....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 77 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAW 77 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece----EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 357899999999999999999998765432 223333321 111122334679999999965432 2344
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
..+..+|++++|+|+.+.........+..+...+.|+++++||+|+... .+.+...+....- .....+++++|++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~----~~~~~~~~~~s~~ 152 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDLLPLLEKLKE----LGPFAEIFPISAL 152 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHHHHHHHHHHh----ccCCCceEEEEec
Confidence 5678999999999999876666666667777778999999999999531 2222222222111 1123579999999
Q ss_pred CCCChhhHHHHHHH
Q 001915 641 KGEKVDDLLETIML 654 (996)
Q Consensus 641 tGeGIdEL~eaIl~ 654 (996)
++.|+++++++|..
T Consensus 153 ~~~~~~~l~~~l~~ 166 (168)
T cd04163 153 KGENVDELLEEIVK 166 (168)
T ss_pred cCCChHHHHHHHHh
Confidence 99999999999854
No 212
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=2.4e-16 Score=159.69 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFG 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v--a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~ 556 (996)
...++|+|+|++|+|||||+++|++..+ ......+.|+++..+.+ ...+.||||||+ +.|.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 4668999999999999999999998642 23344566776544332 257999999994 4455
Q ss_pred HHHHHhhhc---CCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCC
Q 001915 557 AMRARGARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 557 ~mr~rga~~---ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~i 632 (996)
.+...++.. .+++++|+|++++......+....+...++|+++++||+|+.... .++....+... +.. . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~--~--~~ 169 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKF--G--DD 169 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHh--c--CC
Confidence 555555543 468889999988777766666667777889999999999985432 22222222221 100 0 36
Q ss_pred cEEEeccCCCCChhhHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~l 655 (996)
+++++||++|.|++++++.|..+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 79999999999999999998644
No 213
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.71 E-value=7.8e-17 Score=178.47 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=155.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeceEEEEEee------------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVPV------------------ 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se--------------~gGiTqdI~a~~V~i~i------------------ 537 (996)
....|+.+||+|||||||+..|...+...+. ..|-|.++++..+-+.-
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 4457899999999999999998754433221 22455555544333210
Q ss_pred -CCccccEEEEeCCCccchHHHHHHhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC-ChhH
Q 001915 538 -DGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPER 613 (996)
Q Consensus 538 -dgk~~~ItfIDTPGhE~F~~mr~rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a-~~er 613 (996)
+....-+.|+||-|||.|-....+++ +..|..+|+++|++|++.-++|++-.+...+.|+||+++|+|+... ....
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~ 275 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQG 275 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHH
Confidence 11224588999999999999988988 7899999999999999999999999999999999999999999532 2222
Q ss_pred HHHH----HHhcCCCC---C------------CCC-CCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceE
Q 001915 614 VMQE----LSSIGLMP---E------------DWG-GDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTV 673 (996)
Q Consensus 614 v~~e----L~~~gl~~---e------------~~g-g~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~V 673 (996)
+.++ |...+-.+ . ..+ +-+|+|.+|+.+|+|++-|.+.+..+..-. ......++-.+|
T Consensus 276 v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr--~~~d~g~flmYI 353 (527)
T COG5258 276 VVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR--RWDDEGPFLMYI 353 (527)
T ss_pred HHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc--ccCCCCCeEEEE
Confidence 2222 22211110 0 111 247999999999999987776654331100 112334566677
Q ss_pred EEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 674 IEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 674 ies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
-+++...|.|+|+.+.|++|.|+.||.+++|+.
T Consensus 354 d~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~ 386 (527)
T COG5258 354 DKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPF 386 (527)
T ss_pred EeeEEEeeeEEEEeeeEEeeeeccCCEEEEccC
Confidence 788888999999999999999999999999974
No 214
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=4.2e-16 Score=189.83 Aligned_cols=152 Identities=28% Similarity=0.396 Sum_probs=116.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--------hHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--------F~~mr~ 560 (996)
..++|+|+|++|+|||||+|+|++.... ....+|+|++.-.+.. .+ .+..+.||||||.+. |.....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~--~~--~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDA--EW--AGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEE--EE--CCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 4578999999999999999999987653 5567888887533332 22 345799999999653 445556
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
.++..+|++|+|||+.+++.....+++..++..++|+|+|+||+|+.... ....++...++ -..+++||+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~--------~~~~~iSA~ 419 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--YDAAEFWKLGL--------GEPYPISAM 419 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--hhHHHHHHcCC--------CCeEEEECC
Confidence 67899999999999999998888888888888999999999999985421 11222222222 135799999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.||++|+++|+..
T Consensus 420 ~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 420 HGRGVGDLLDEALDS 434 (712)
T ss_pred CCCCchHHHHHHHHh
Confidence 999999999998754
No 215
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.4e-16 Score=159.51 Aligned_cols=140 Identities=20% Similarity=0.275 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----cchHHHHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----EAFGAMRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----E~F~~mr~rga~~ADi 568 (996)
+|+++|++|+|||||+++|.+.... ...|+. +. +... .+|||||. ..+...+..++..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~----~~~~~~-----v~--~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL----ARKTQA-----VE--FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc----CccceE-----EE--ECCC----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 6999999999999999998864321 112322 11 2222 26999996 2233333345789999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|+|+|++++........... ..+.|+++++||+|+.+.+.+.+.+.+...++ ..|++++||++|+||++|
T Consensus 68 il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 68 LIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGF-------EEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCC-------CCCEEEEECCCccCHHHH
Confidence 999999998755444332222 24679999999999977666655555555432 258999999999999999
Q ss_pred HHHHHHHH
Q 001915 649 LETIMLVA 656 (996)
Q Consensus 649 ~eaIl~la 656 (996)
+++|....
T Consensus 139 ~~~l~~~~ 146 (158)
T PRK15467 139 VDYLASLT 146 (158)
T ss_pred HHHHHHhc
Confidence 99987543
No 216
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=2.6e-16 Score=148.85 Aligned_cols=153 Identities=27% Similarity=0.419 Sum_probs=109.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH-------HHHHhhhcCC
Q 001915 496 IMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-------MRARGARVTD 567 (996)
Q Consensus 496 IVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~-------mr~rga~~AD 567 (996)
|+|++|+|||||+++|.+.... .....++|.....+.... . ....+.||||||+..+.. .....+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL--G-PLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe--c-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 5899999999999999977655 555566666554333322 2 146799999999766543 3334678999
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHH-HHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQE-LSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~e-L~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
++++|+|+.+.........+......+.|+++++||+|+........... .... .......+++++||+++.|++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLI----LLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhh----cccccCCceEEEeeeccCCHH
Confidence 99999999998777776656666778999999999999964332221110 1111 112235789999999999999
Q ss_pred hHHHHHHHH
Q 001915 647 DLLETIMLV 655 (996)
Q Consensus 647 EL~eaIl~l 655 (996)
+++++|..+
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998753
No 217
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.70 E-value=3e-16 Score=159.87 Aligned_cols=154 Identities=25% Similarity=0.280 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+|+|..|+|||||+++|....+.....+ |... .+...+.+++....+.+|||+|++.|..++...+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP--TVFE-NYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC--cccc-eEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEE
Confidence 4799999999999999999986655432222 2111 122233445666778999999999888777777899999999
Q ss_pred EEecCCCCChhHH--HHHHHHH--HcCCCEEEEecccCCCCCCh-------------hHHHHHHHhcCCCCCCCCCCCcE
Q 001915 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANP-------------ERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 572 VVDAsdgv~~Qt~--E~I~~ak--~~~IPIIVVINKiDL~~a~~-------------erv~~eL~~~gl~~e~~gg~ipv 634 (996)
|+|+++....+.. .++..+. ..++|+|+|+||+|+..... ++........ +..++
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 150 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI--------GAKKY 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh--------CCcEE
Confidence 9999874333222 1222222 23689999999999843211 1111111111 12479
Q ss_pred EEeccCCCCChhhHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~la 656 (996)
|+|||++|.||+++|+++....
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997543
No 218
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=2.1e-16 Score=157.84 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=102.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|+.++|||||+.++....+..... ++ .+.+...+.+++..+.+.||||+|++.+ .+++.+|+++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~--~~--~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES--PE--GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC--CC--ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEE
Confidence 379999999999999999998766643221 22 2233444556777788999999999752 45678999999
Q ss_pred EEecCCCCChhHH-HHHHHHHH----cCCCEEEEecccCCCCCChhHH----HHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 572 VVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGANPERV----MQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak~----~~IPIIVVINKiDL~~a~~erv----~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|||+++....+.. .++..+.. .++|+++|+||+|+.......+ ..++... .+.++|++|||++|
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~-------~~~~~~~e~SAk~~ 144 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD-------MKRCSYYETCATYG 144 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH-------hCCCcEEEEecCCC
Confidence 9999986555542 22233322 4579999999999843221111 1222221 12368999999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.||+++|+.+..
T Consensus 145 ~~i~~~f~~~~~ 156 (158)
T cd04103 145 LNVERVFQEAAQ 156 (158)
T ss_pred CCHHHHHHHHHh
Confidence 999999998863
No 219
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=8.5e-17 Score=160.83 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=117.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|.++|..|+|||||+-++....+... ..+|+++++....+.++++..++.||||+|+|.|..+...|++.|.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~--~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDL--HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCcc--CCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 347899999999999999999998877644 345777777777788899999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH-----HHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I-----~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
|+|||++..-...-.++| .+....++-.++|+||+|.... +.++-......+ .+-|+++||++
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h---------~~LFiE~SAkt 158 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH---------RCLFIECSAKT 158 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh---------CcEEEEcchhh
Confidence 999999874433333332 2222335557899999997421 122222222233 35699999999
Q ss_pred CCChhhHHHHHH
Q 001915 642 GEKVDDLLETIM 653 (996)
Q Consensus 642 GeGIdEL~eaIl 653 (996)
.+|+...|+.+.
T Consensus 159 ~~~V~~~Feelv 170 (209)
T KOG0080|consen 159 RENVQCCFEELV 170 (209)
T ss_pred hccHHHHHHHHH
Confidence 999999998876
No 220
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=8.2e-16 Score=172.28 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=109.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc-------chHHHHHHhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRARGA 563 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE-------~F~~mr~rga 563 (996)
-..|+|+|.||+||||||++|...+..+..++++|.+.....+.+. ....++||||||.- .+.....+++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 3579999999999999999999887777777888988766555432 33569999999952 2444555677
Q ss_pred hcCCeEEEEEecCCCCChhHHH-HHHHHHH-----cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 564 RVTDIAVIVVAADDGIRPQTNE-AIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~-----~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
..||++|+|||+++....+..+ +...+.. .++|+|+|+||+|+....... ...+... . ..+ ..+++++
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-~~~~~~~-~--~~~--~~~i~~i 308 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-EKRAALE-L--AAL--GGPVFLI 308 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-HHHHHHH-H--Hhc--CCCEEEE
Confidence 8899999999998743332222 2233332 368999999999996432111 1111110 0 011 2579999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++++||++|+++|..+.
T Consensus 309 SAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 309 SAVTGEGLDELLRALWELL 327 (335)
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 9999999999999997653
No 221
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=2.6e-16 Score=155.34 Aligned_cols=150 Identities=26% Similarity=0.245 Sum_probs=98.8
Q ss_pred EEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhhcCCe
Q 001915 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGARVTDI 568 (996)
Q Consensus 496 IVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~~ADi 568 (996)
|+|++|+|||||+++|.+........+++|++.....+. +. .+..+.||||||+.. +......++..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVE--VP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEE--cC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999998776555666777766544433 22 146799999999732 11123345678999
Q ss_pred EEEEEecCCCC-----C-hhH-HHHHHHHH----------HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCC
Q 001915 569 AVIVVAADDGI-----R-PQT-NEAIAHAK----------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 569 VILVVDAsdgv-----~-~Qt-~E~I~~ak----------~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ 631 (996)
+++|+|+++.. . ... ..+...+. ..+.|+++|+||+|+..... ......... .....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~----~~~~~ 151 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEELVREL----ALEEG 151 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHHHHHH----hcCCC
Confidence 99999998863 1 111 11111111 14789999999999954322 111100000 01124
Q ss_pred CcEEEeccCCCCChhhHHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~ 654 (996)
.+++++||+++.|+++++++|..
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHh
Confidence 67999999999999999998864
No 222
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=8.6e-16 Score=177.78 Aligned_cols=302 Identities=23% Similarity=0.255 Sum_probs=197.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+-.+|.|+-|-++|||||.++++..... .....|||....+..+. +..+++++|||||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~----w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT----WRDYRINIIDTPG 113 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee----eccceeEEecCCC
Confidence 5568999999999999999987632111 11234666655444433 3478999999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcC---------
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIG--------- 622 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~g--------- 622 (996)
|-+|+....|.++..|++|+|+|+..|+..|+...+++++..++|.|..+||+|..++++-+..+++...-
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 99999999999999999999999999999999999999999999999999999998877654444433210
Q ss_pred -----------------------------------------------------------------CCCCCC---------
Q 001915 623 -----------------------------------------------------------------LMPEDW--------- 628 (996)
Q Consensus 623 -----------------------------------------------------------------l~~e~~--------- 628 (996)
+..+..
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aI 273 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAI 273 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHH
Confidence 000000
Q ss_pred ------CCCCcEEEeccCCCCChhhHHHHHHHHHH----HHhh--------------hcCCCC-CCcceEEEEeeecCCC
Q 001915 629 ------GGDIPMVQISALKGEKVDDLLETIMLVAE----LQEL--------------KANPHR-NAKGTVIEAGLHKSKG 683 (996)
Q Consensus 629 ------gg~ipvVeISAktGeGIdEL~eaIl~lae----l~el--------------k~~p~r-~~~g~Vies~~dkgrG 683 (996)
+..+|++.-||+++.||+-|+++++.... .... ...++. ++.|..++....+. |
T Consensus 274 Rr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-G 352 (721)
T KOG0465|consen 274 RRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-G 352 (721)
T ss_pred HHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-c
Confidence 24579999999999999999999985432 1110 011222 66677777666665 9
Q ss_pred cEEEEEEEcCEeccCcEEEEcccceeEeecccc--ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhh
Q 001915 684 PVATFILQNGTLKKGDVVVCGEAFGKIIGLNGV--PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSS 761 (996)
Q Consensus 684 ~Vat~lV~~GtLk~GD~VviG~~~gkV~Gl~g~--P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~ 761 (996)
....++|++|+|+.||+|+--..-.++ -+..+ +.+++ .++ .+....+.|-+..|-.-.+.+.
T Consensus 353 qLTyvRvYqG~L~kG~~iyN~rtgKKv-rv~RL~rmHa~~----med-----------V~~v~AG~I~alfGidcasGDT 416 (721)
T KOG0465|consen 353 QLTYVRVYQGTLSKGDTIYNVRTGKKV-RVGRLVRMHAND----MED-----------VNEVLAGDICALFGIDCASGDT 416 (721)
T ss_pred ceEEEEEeeeeecCCcEEEecCCCcee-EhHHHhHhcccc----cch-----------hhhhhccceeeeeccccccCce
Confidence 999999999999999999876542221 11000 01111 000 0111112222221111111111
Q ss_pred HHHH-HhcCcccC--CCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 762 LASA-VSAGKLSG--LDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 762 l~~~-~~~~~~~~--~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
+... ........ +-.+.+.+-||+-+.-..++...+|..+..++..+++-.
T Consensus 417 ftd~~~~~~~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~ 470 (721)
T KOG0465|consen 417 FTDKQNLALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSL 470 (721)
T ss_pred eccCccccceeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEe
Confidence 0000 00000000 123567888999999999999999999999988887543
No 223
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=1.2e-15 Score=158.63 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
...+|+++|++|+|||||++++....+.... ..|.+..++...+..++..+.+.+|||+|++.|..++..++..+|++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 3478999999999999999887765554333 24555555555555577788999999999999999998889999999
Q ss_pred EEEEecCCCCChhHHHHH-HHHH--HcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 570 VIVVAADDGIRPQTNEAI-AHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I-~~ak--~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+|+++....+....+ ..+. ..++|+++++||+|+..... .+........ .+.++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKK---------NLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHc---------CCEEEEEeCCCCCCH
Confidence 999999986554433222 2111 24789999999999854221 1222211111 257999999999999
Q ss_pred hhHHHHHHHH
Q 001915 646 DDLLETIMLV 655 (996)
Q Consensus 646 dEL~eaIl~l 655 (996)
+++|.+|.+.
T Consensus 157 ~~~f~~ia~~ 166 (215)
T PTZ00132 157 EKPFLWLARR 166 (215)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 224
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.68 E-value=1.8e-16 Score=160.95 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=115.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|..|+|||||+++|....... ...|.+.....+.+ .++.++|||.+|+..|...|..++..+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee----CcEEEEEEeccccccccccceeeccccce
Confidence 566799999999999999999998765432 22355544444433 45789999999999999999999999999
Q ss_pred EEEEEecCCCC-ChhHHHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGI-RPQTNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv-~~Qt~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++.- .....+.+..+. ..++|++|++||+|++++ +.+++...+.-..+. ....+.++.|||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCC
Confidence 99999999742 222333333222 246899999999999764 344455444433332 123578999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
+|+.+.++||..+
T Consensus 162 ~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 162 EGVDEGLEWLIEQ 174 (175)
T ss_dssp BTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999754
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=5.8e-16 Score=144.00 Aligned_cols=148 Identities=26% Similarity=0.352 Sum_probs=108.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEec
Q 001915 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (996)
Q Consensus 496 IVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDA 575 (996)
|+|++++|||||+++|......... ...|. +..+............+.+|||||+..+.......+..+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-cccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 5899999999999999976652222 22333 555566655555667899999999998888888888999999999999
Q ss_pred CCCCChhHHHHH-----HHHHHcCCCEEEEecccCCCCCChhHHHH---HHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 576 DDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDGANPERVMQ---ELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 576 sdgv~~Qt~E~I-----~~ak~~~IPIIVVINKiDL~~a~~erv~~---eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
+++........+ ......++|+++++||+|+.......... .... ....+++++||+++.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK--------ELGVPYFETSAKTGENVEE 150 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh--------hcCCcEEEEecCCCCChHH
Confidence 986555444332 33344688999999999996543322221 1111 1247899999999999999
Q ss_pred HHHHHH
Q 001915 648 LLETIM 653 (996)
Q Consensus 648 L~eaIl 653 (996)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999874
No 226
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=3.8e-16 Score=154.44 Aligned_cols=161 Identities=21% Similarity=0.236 Sum_probs=122.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++.+|+|++++|||||+-++....+..++. +|+++++..-.+++.|..+.+.||||+|+|.|+.+...+++.++++++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYi--tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYI--TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceE--EEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 456899999999999999999887776655 455665555556677999999999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHH--cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~~Qt~-E~I~~ak~--~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|||++++...... .++..++. ..+|-++|+||.|.++.. .+......... .+.+|++||+...|+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m---------gie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQM---------GIELFETSAKENENV 157 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhc---------Cchheehhhhhcccc
Confidence 9999987654432 23333332 257889999999997532 23333333333 367999999999999
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 001915 646 DDLLETIMLVAELQELKA 663 (996)
Q Consensus 646 dEL~eaIl~lael~elk~ 663 (996)
+.+|..|..+.....+..
T Consensus 158 E~mF~cit~qvl~~k~r~ 175 (198)
T KOG0079|consen 158 EAMFHCITKQVLQAKLRE 175 (198)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999887654444333
No 227
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.8e-16 Score=154.32 Aligned_cols=155 Identities=20% Similarity=0.176 Sum_probs=119.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.++.|||...+|||||+-++....+..... .|.+|.+....+.-..+.+.+++|||+|+|.|+.+...+++.++++||
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afv--sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccccee--eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 589999999999999999999887765433 355555544444444566889999999999999999999999999999
Q ss_pred EEecCCCCChhHHH----HHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 572 VVAADDGIRPQTNE----AIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 572 VVDAsdgv~~Qt~E----~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
++|+++.......+ .|.+....+.|+|+|+||||+... ..++......++|+ .||++|||.+.|
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf---------efFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF---------EFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh---------HHhhhccccccc
Confidence 99999854433332 233334468999999999999543 23555555555554 689999999999
Q ss_pred hhhHHHHHHHHHH
Q 001915 645 VDDLLETIMLVAE 657 (996)
Q Consensus 645 IdEL~eaIl~lae 657 (996)
+.++|+.++...+
T Consensus 171 Vk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 171 VKQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 228
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.8e-16 Score=153.78 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=120.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
++|+++|..|+|||.|+.++...-+..+. |.|+++++....+.+++..+++++|||+|+|+|......|++.++++||
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 68999999999999999999988776543 4577777777777788999999999999999999999999999999999
Q ss_pred EEecCCCC----ChhHHHHHHHHHHcCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGI----RPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv----~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|++... .|.|...+.......+--|+|+||+|+.+. -++++-.++.+.. +.-|+++||+..+|+
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q--------dmyfletsakea~nv 157 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ--------DMYFLETSAKEADNV 157 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh--------hhhhhhhcccchhhH
Confidence 99998632 344444444444445667999999999542 2344444554432 245889999999999
Q ss_pred hhHHHHHH
Q 001915 646 DDLLETIM 653 (996)
Q Consensus 646 dEL~eaIl 653 (996)
+.||..+.
T Consensus 158 e~lf~~~a 165 (213)
T KOG0095|consen 158 EKLFLDLA 165 (213)
T ss_pred HHHHHHHH
Confidence 99998875
No 229
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.1e-16 Score=163.00 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=120.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
.-++|+++|++++|||-||.++....+...... |+++.+.+..+.++++.++.+||||+|+|+|.++...|++.|-++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks--TIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS--TIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCccccc--ceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 346799999999999999999998888755543 677777777778899999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCC--CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDG--ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~--a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+||||++...+.+..+ ++..++. .++++++|+||+||.+ +-+.+.-..+++.. ...|+++||+.+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~--------~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE--------GLFFLETSALDAT 162 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhc--------CceEEEecccccc
Confidence 9999998754443322 2233332 4789999999999954 11222222222211 2469999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+++.|+.++..
T Consensus 163 NVe~aF~~~l~~ 174 (222)
T KOG0087|consen 163 NVEKAFERVLTE 174 (222)
T ss_pred cHHHHHHHHHHH
Confidence 999999887643
No 230
>PRK11058 GTPase HflX; Provisional
Probab=99.65 E-value=1.7e-15 Score=174.71 Aligned_cols=150 Identities=24% Similarity=0.297 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc---------hHHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRAR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~---------F~~mr~r 561 (996)
.|.|+|+|.+|+|||||+|+|.+..+.+....++|.+.....+.+ .+ ...+.||||||... |.. +..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~~-~~~~~l~DTaG~~r~lp~~lve~f~~-tl~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--AD-VGETVLADTVGFIRHLPHDLVAAFKA-TLQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--CC-CCeEEEEecCcccccCCHHHHHHHHH-HHH
Confidence 378999999999999999999988877777778888876555543 22 23689999999632 332 234
Q ss_pred hhhcCCeEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCc-EEE
Q 001915 562 GARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP-MVQ 636 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ip-vVe 636 (996)
.+..+|++|+|+|+++....... ..+..+...++|+|+|+||+|+.......+. .... ..+ +++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~--~~~~---------~~~~~v~ 341 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID--RDEE---------NKPIRVW 341 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH--HHhc---------CCCceEE
Confidence 56889999999999986543332 3344444457999999999999542111111 1111 123 588
Q ss_pred eccCCCCChhhHHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~l 655 (996)
+||++|.||++|+++|...
T Consensus 342 ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 342 LSAQTGAGIPLLFQALTER 360 (426)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999754
No 231
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=1.8e-15 Score=169.23 Aligned_cols=154 Identities=23% Similarity=0.245 Sum_probs=107.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc-------chHHHHHHhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRARGA 563 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE-------~F~~mr~rga 563 (996)
-..|+|+|.+|+|||||+++|...+..+..++.+|.+.....+.+ + ....++||||||+. .+.....+.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~--~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV--D-DGRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe--C-CceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 457999999999999999999987766667777887766655543 2 23579999999963 2333445566
Q ss_pred hcCCeEEEEEecCCC---CChhHH-HHHHHHHH-----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCc
Q 001915 564 RVTDIAVIVVAADDG---IRPQTN-EAIAHAKA-----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 564 ~~ADiVILVVDAsdg---v~~Qt~-E~I~~ak~-----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ip 633 (996)
..||++|+|||+++. ...+.. .+.+.+.. .+.|+|||+||+|+.... .+.+.+++... + ..+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~------~--~~~ 305 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA------L--GKP 305 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH------c--CCc
Confidence 789999999999864 111122 22222222 368999999999996432 12222333221 1 257
Q ss_pred EEEeccCCCCChhhHHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~l 655 (996)
++++||++++||++|+++|...
T Consensus 306 vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 306 VFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred EEEEEccCCcCHHHHHHHHHHH
Confidence 9999999999999999998643
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.64 E-value=1.1e-15 Score=165.11 Aligned_cols=149 Identities=24% Similarity=0.390 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccc------------------cCCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE------------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se------------------~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
+|+|+||+|+|||||+++|+........ ..++|... ....+ ...++.++|||||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~--~~~~~--~~~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSIST--SVAPL--EWKGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccc--eeEEE--EECCEEEEEEECcCHHH
Confidence 4899999999999999999743211111 11222221 12222 23456899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
|...+..++..+|++|+|+|++++...++...++.+...++|+++++||+|+...+.+.....+... ++..+-.
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~------~~~~~~~ 150 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEA------FGRPVVP 150 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHH------hCCCeEE
Confidence 9988999999999999999999999999999999888899999999999999877777666666553 1112223
Q ss_pred EEeccCCCCChhhHHHH
Q 001915 635 VQISALKGEKVDDLLET 651 (996)
Q Consensus 635 VeISAktGeGIdEL~ea 651 (996)
+.+...+|.|+..+.+.
T Consensus 151 ~~ip~~~~~~~~~~vd~ 167 (268)
T cd04170 151 LQLPIGEGDDFKGVVDL 167 (268)
T ss_pred EEecccCCCceeEEEEc
Confidence 44556677666555443
No 233
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-15 Score=151.22 Aligned_cols=154 Identities=22% Similarity=0.248 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
-+++.++|..|.|||.||.++...++...... |.++.+..--+.+.++.++++||||+|+|.|......|++.+.+++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssH--TiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSH--TIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccc--eeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 36899999999999999999998887654443 5555555555566888999999999999999999999999999999
Q ss_pred EEEecCCCCChhH----HHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 571 IVVAADDGIRPQT----NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 571 LVVDAsdgv~~Qt----~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
||||++....... ...++.+...++-+|+++||.||.. ++....+....+..+. .+.+.++||++|+|++
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~---~R~VtflEAs~FaqEn---el~flETSa~TGeNVE 160 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP---EREVTFLEASRFAQEN---ELMFLETSALTGENVE 160 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh---hhhhhHHHHHhhhccc---ceeeeeecccccccHH
Confidence 9999987433322 2223334445666899999999943 3333333333333222 3578999999999999
Q ss_pred hHHHHH
Q 001915 647 DLLETI 652 (996)
Q Consensus 647 EL~eaI 652 (996)
|.|-..
T Consensus 161 EaFl~c 166 (214)
T KOG0086|consen 161 EAFLKC 166 (214)
T ss_pred HHHHHH
Confidence 987654
No 234
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=4.7e-15 Score=169.28 Aligned_cols=157 Identities=21% Similarity=0.190 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~ 564 (996)
.-|+|+|.||+|||||+|+|...+..++..+++|++.....+.+ .....+.|+||||.-. +.....+.+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~---~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV---DDERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe---CCCcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 46999999999999999999988877788889998876665543 2234699999999421 3333445788
Q ss_pred cCCeEEEEEecCC----CCChhHHHHHHHHHH-----cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 565 VTDIAVIVVAADD----GIRPQTNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 565 ~ADiVILVVDAsd----gv~~Qt~E~I~~ak~-----~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
.+|++++|+|++. ....+....++.+.. .+.|+|+|+||+|+... ..+...+..+. ..++...+++
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~---~~~~~~~~Vi 311 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV---EALGWEGPVY 311 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH---HHhCCCCCEE
Confidence 9999999999872 122222333343333 36899999999998532 22222222110 0011123689
Q ss_pred EeccCCCCChhhHHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~la 656 (996)
++||+++.||++|+++|....
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHh
Confidence 999999999999999997553
No 235
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=5.8e-15 Score=169.93 Aligned_cols=152 Identities=24% Similarity=0.261 Sum_probs=106.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~ 564 (996)
..|+|+|.+|+||||||++|++.+......+++|.++....+.+. ....++||||||... +.....+.+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 479999999999999999999887666677888988776655442 235799999999521 2333445567
Q ss_pred cCCeEEEEEecCCCC--C--hhHHHHHHHHHH-----cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 565 VTDIAVIVVAADDGI--R--PQTNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 565 ~ADiVILVVDAsdgv--~--~Qt~E~I~~ak~-----~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
.||++|+|||+++.. . .....+...+.. .++|+|||+||+|+... ......+... + + .+++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-l-----~--~~i~ 305 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-L-----G--PKVF 305 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-h-----C--CcEE
Confidence 899999999997531 1 122222233332 47899999999998432 2222222221 1 1 4699
Q ss_pred EeccCCCCChhhHHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~la 656 (996)
++||++++|+++|+++|....
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997543
No 236
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3e-15 Score=174.76 Aligned_cols=154 Identities=25% Similarity=0.212 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc-------chHHHHHHhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRARGA 563 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE-------~F~~mr~rga 563 (996)
-..|+|+|.||+|||||+++|...+.....++++|.++....+.+ ....|+||||||.- .......+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~----~~~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA----GDTRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE----CCeEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 367999999999999999999988777778888998876555443 23579999999942 1222344567
Q ss_pred hcCCeEEEEEecCCCC---Ch-hHH-----HHHHHH----------HHcCCCEEEEecccCCCCCCh--hHHHHHHHhcC
Q 001915 564 RVTDIAVIVVAADDGI---RP-QTN-----EAIAHA----------KAAGVPIVIAINKIDKDGANP--ERVMQELSSIG 622 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv---~~-Qt~-----E~I~~a----------k~~~IPIIVVINKiDL~~a~~--erv~~eL~~~g 622 (996)
..||++|+|||+++.. .+ ... ++..+. ...+.|+|||+||+|+++... +.+...+...
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~- 313 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR- 313 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-
Confidence 8899999999997521 11 111 222222 234789999999999964321 1112222221
Q ss_pred CCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 623 l~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
.+++|+|||++++||++|+++|..+..
T Consensus 314 --------g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 314 --------GWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred --------CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999986654
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=6.6e-15 Score=142.40 Aligned_cols=152 Identities=22% Similarity=0.354 Sum_probs=103.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcc--ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc----------hHHHHHH
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAMRAR 561 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va--~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~----------F~~mr~r 561 (996)
|+++|++|+|||||++.|.+.... .....+.|..+..+ ..++ .+.||||||+.. |..+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 799999999999999999954333 22233344433222 2222 799999999533 3444444
Q ss_pred hh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 562 GA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 562 ga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
++ ...+++++++|..+.......+.++.+...+.|+++++||+|+..... ......+... +.. +....+++++
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~-l~~--~~~~~~~~~~ 151 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKE-LKL--FEIDPPIILF 151 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHH-HHh--ccCCCceEEE
Confidence 44 346789999999887777777777888888899999999999853221 1122222111 100 2234689999
Q ss_pred ccCCCCChhhHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLV 655 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~l 655 (996)
||+++.|+.+++++|..+
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998653
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=151.17 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=120.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccchHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~--va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F~~ 557 (996)
..+-|+++|.+|+|||||+|+|++.+ .-.+..+|.||.+++|.+. + .+.|+|.|| .+....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----D---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----C---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 55789999999999999999999866 4477889999999887764 2 389999999 355666
Q ss_pred HHHHhh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHH-hcCCCCCCCCCCC
Q 001915 558 MRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELS-SIGLMPEDWGGDI 632 (996)
Q Consensus 558 mr~rga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~-~~gl~~e~~gg~i 632 (996)
+...|+ ..-.++++++|+.++....+.+.+..+...++|++|++||+|+...+ ..+...... ...+... | ..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~-~--~~ 172 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP-D--DQ 172 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-c--cc
Confidence 666777 23577899999999999999999999999999999999999996532 222233333 2222211 1 12
Q ss_pred cEEEeccCCCCChhhHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~l 655 (996)
.++..|+.++.|+++|...|...
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHH
Confidence 28889999999999999988754
No 239
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=8.4e-15 Score=152.63 Aligned_cols=159 Identities=21% Similarity=0.294 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC-CeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT-DIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A-DiVI 570 (996)
++|+++|++++|||||+++|....+.... ..++..+. .......+....+.+||||||+.|..++..+++.+ +++|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~--~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV 77 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVA--TFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV 77 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecce--EEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence 57999999999999999999977654332 22222222 22221123456799999999999999999999888 9999
Q ss_pred EEEecCCCC--ChhHHHHH----HHHH--HcCCCEEEEecccCCCCCCh-hHHHHHHHh----------cCC--------
Q 001915 571 IVVAADDGI--RPQTNEAI----AHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSS----------IGL-------- 623 (996)
Q Consensus 571 LVVDAsdgv--~~Qt~E~I----~~ak--~~~IPIIVVINKiDL~~a~~-erv~~eL~~----------~gl-------- 623 (996)
+|||+.+.. .....+.+ .... ..++|++|++||+|+..+.. +.+...+.. ..+
T Consensus 78 ~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~ 157 (203)
T cd04105 78 FVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEG 157 (203)
T ss_pred EEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999998852 11122222 1111 14799999999999965433 222222221 000
Q ss_pred -------------CCCCCCCCCcEEEeccCCCC-ChhhHHHHHH
Q 001915 624 -------------MPEDWGGDIPMVQISALKGE-KVDDLLETIM 653 (996)
Q Consensus 624 -------------~~e~~gg~ipvVeISAktGe-GIdEL~eaIl 653 (996)
.+......+.++++|++.+. |++.+.+||.
T Consensus 158 ~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 158 SKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred cccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 01111246789999999876 6999999884
No 240
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=5.4e-15 Score=180.94 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=111.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH----------HH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM----------RA 560 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m----------r~ 560 (996)
..+|+++|++|+|||||+|+|.+.+...+..+|+|.+..... +...+..++++||||+..|... ..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~----~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ----FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE----EEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 468999999999999999999988777777889888643322 2345568999999998776421 11
Q ss_pred Hhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 561 RGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 561 rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
.++ ..+|++|+|+|+++... ......++.+.++|+|+++||+|+.+. ......+.+.+. + .++++++
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~------L--G~pVvpi 148 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR------L--GCPVIPL 148 (772)
T ss_pred HHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH------h--CCCEEEE
Confidence 232 47999999999987432 344556677789999999999998532 222223333331 1 2689999
Q ss_pred ccCCCCChhhHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLV 655 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~l 655 (996)
||++|+|++++++.+...
T Consensus 149 SA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EeecCCCHHHHHHHHHHh
Confidence 999999999999998754
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=146.16 Aligned_cols=159 Identities=25% Similarity=0.357 Sum_probs=125.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------ccccCC---ceeeeceEEEEEeeCCccccEEEEeCCCccchH
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------AAEAGG---ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-------~se~gG---iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~ 556 (996)
+..+..+|+|.|..++||||++.++...... .....+ +|..+++....+. .+..+.|+|||||++|.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHH
Confidence 3456789999999999999999999865431 112223 6666655555542 23579999999999999
Q ss_pred HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcC-CCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 557 ~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~-IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
.||..+++.++++|+++|.+.+......+.+..+...+ +|++|++||.|+.++.+.+...++....+ ..+++|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi 156 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVI 156 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCcee
Confidence 99999999999999999999987776677888888777 99999999999988765555555444332 247899
Q ss_pred EeccCCCCChhhHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIML 654 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~ 654 (996)
+++|..+++..+.++.++.
T Consensus 157 ~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 157 EIDATEGEGARDQLDVLLL 175 (187)
T ss_pred eeecccchhHHHHHHHHHh
Confidence 9999999999999988764
No 242
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=6.6e-15 Score=146.67 Aligned_cols=134 Identities=25% Similarity=0.317 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC----ccchHHHHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----hE~F~~mr~rga~~ADi 568 (996)
+|.+||.+++|||||+++|.+.... ..-||.+.+ . =.++|||| +..|.......+..||+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~----~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR----YKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC----cCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 7999999999999999999886542 223655321 1 14599999 45555556667789999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC--CCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD--GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~--~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+++|.|+++.....-- ..+...+.|+|-|+||+|+. +++.++..+.|...|.. .+|++|+.+|+||+
T Consensus 67 V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--------~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 67 VLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--------EIFEVSAVTGEGIE 135 (143)
T ss_pred EEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC--------CeEEEECCCCcCHH
Confidence 9999999985332222 23445679999999999998 67888888899988762 47999999999999
Q ss_pred hHHHHHH
Q 001915 647 DLLETIM 653 (996)
Q Consensus 647 EL~eaIl 653 (996)
+|.+.|.
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9999873
No 243
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=150.99 Aligned_cols=158 Identities=24% Similarity=0.332 Sum_probs=121.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|.+|+|||+|+.++....+...+.+.+. +.|...+.+++..+.+.|+||+|++.|..|+..++..+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie---d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF 78 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE---DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF 78 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc---ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence 457899999999999999999998888766555333 46677777788889999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH-HHH---H-HcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTNEAI-AHA---K-AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I-~~a---k-~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
++||++++..+.+....+ .++ + ...+|+|+|+||+|+.... ..+--..+. ..| .++|+++||+..
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la------~~~--~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALA------RSW--GCAFIETSAKLN 150 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHH------Hhc--CCcEEEeeccCC
Confidence 999999996555443222 222 2 2457999999999996421 111111221 122 477999999999
Q ss_pred CChhhHHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAEL 658 (996)
Q Consensus 643 eGIdEL~eaIl~lael 658 (996)
.+++++|..|+.....
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999876554
No 244
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=8e-15 Score=175.25 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=106.0
Q ss_pred cCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH------HHHhh--hcCCeE
Q 001915 498 GHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA--RVTDIA 569 (996)
Q Consensus 498 Gh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m------r~rga--~~ADiV 569 (996)
|.+|+|||||+|+|.+.+...+..+|+|.+.....+. ++ +..+++|||||+..|... ...++ ..+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~--~~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLG--FQ--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEE--EC--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 8999999999999998887777888999876544443 23 346899999999877543 22232 478999
Q ss_pred EEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
++|+|+++. ....+...++...++|+++|+||+|+.+.. .....+.+.+. + +++++++||++|+|++++
T Consensus 77 I~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~------l--g~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 77 VNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER------L--GVPVVPTSATEGRGIERL 146 (591)
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH------c--CCCEEEEECCCCCCHHHH
Confidence 999999872 334445555666799999999999984322 11112333332 1 268999999999999999
Q ss_pred HHHHHHHH
Q 001915 649 LETIMLVA 656 (996)
Q Consensus 649 ~eaIl~la 656 (996)
+++|...+
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99997653
No 245
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.58 E-value=1.9e-14 Score=150.63 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee-----CCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i-----dgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
.+|+++|..++|||||+++|....+...+.+ |.+..+....+.+ ++..+.+.||||+|++.|..++..+++.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~--Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSW--TVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--ceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 3799999999999999999998877654433 4443332222223 24567899999999999999999999999
Q ss_pred CeEEEEEecCCCCChhHHHH-HHHHH----------------------HcCCCEEEEecccCCCCCChhHHHHHHHhcCC
Q 001915 567 DIAVIVVAADDGIRPQTNEA-IAHAK----------------------AAGVPIVIAINKIDKDGANPERVMQELSSIGL 623 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~-I~~ak----------------------~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl 623 (996)
|++|||||+++....+.... +..+. ..++|+|||+||+|+.+.....-...+...+.
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 99999999998644332221 12221 13689999999999954211111111121222
Q ss_pred CCCCCCCCCcEEEeccCCCC
Q 001915 624 MPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 624 ~~e~~gg~ipvVeISAktGe 643 (996)
..+.+ .++.++.+++...
T Consensus 159 ia~~~--~~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQG--NAEEINLNCTNGR 176 (202)
T ss_pred HHHhc--CCceEEEecCCcc
Confidence 22222 3567777877654
No 246
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.4e-14 Score=165.49 Aligned_cols=169 Identities=21% Similarity=0.245 Sum_probs=119.5
Q ss_pred hhhcccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc--------c
Q 001915 483 DLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------E 553 (996)
Q Consensus 483 ~~~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh--------E 553 (996)
+..+..+.++.|+|+|.||+|||||+|+|.+.... +++.+|+|+|. ++..++-.++++.+.||+|. |
T Consensus 260 ~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDa----iea~v~~~G~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 260 DEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDA----IEAQVTVNGVPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhh----heeEeecCCeEEEEEeccccccccCChhH
Confidence 33445568899999999999999999999977654 89999999994 44445556789999999993 4
Q ss_pred chHHHHHHh-hhcCCeEEEEEecCCCCChhHHHHHHHHHHc------------CCCEEEEecccCCCCCChhHHHHHHHh
Q 001915 554 AFGAMRARG-ARVTDIAVIVVAADDGIRPQTNEAIAHAKAA------------GVPIVIAINKIDKDGANPERVMQELSS 620 (996)
Q Consensus 554 ~F~~mr~rg-a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~------------~IPIIVVINKiDL~~a~~erv~~eL~~ 620 (996)
....++++. +..+|++++|+|+..+...+.....+.+... ..|+|++.||+|+...-.+. ...-
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-~~~~-- 412 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-TKIP-- 412 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc-cCCc--
Confidence 566667665 4899999999999887777776655555432 25789999999984320000 0000
Q ss_pred cCCCCCCCCCCC-cEEEeccCCCCChhhHHHHHHHHHHH
Q 001915 621 IGLMPEDWGGDI-PMVQISALKGEKVDDLLETIMLVAEL 658 (996)
Q Consensus 621 ~gl~~e~~gg~i-pvVeISAktGeGIdEL~eaIl~lael 658 (996)
..+......... .+.++|+++++|++.|..+|....+.
T Consensus 413 ~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 413 VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 000011111223 45569999999999999999876543
No 247
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=2.5e-15 Score=149.97 Aligned_cols=154 Identities=19% Similarity=0.155 Sum_probs=113.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
-.++|+++|...+|||||+-++...+|..... .|..-.+....+.+++....+.||||+|+|.|.++-..||+.+|++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--sTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--STLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH--HHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 34789999999999999999999888765433 2333333344455667777899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH----HHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTNEAI----AHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~I----~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+||||++|.-..|-...| +...-..+-++||+||+||.... .++........ ...++++||+.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv---------GA~y~eTSAk~N 160 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV---------GALYMETSAKDN 160 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh---------chhheecccccc
Confidence 999999997666653322 22333456799999999994321 12222222222 256999999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.||.+||+.|..
T Consensus 161 ~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 161 VGISELFESLTA 172 (218)
T ss_pred cCHHHHHHHHHH
Confidence 999999998863
No 248
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=8.3e-15 Score=147.07 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=112.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEE--EEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYK--VQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~--V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+++.++|+.-+||||||.++...+++.-..+ |.++++|. +++. .+..+++++|||+|+|.|......|++++-
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdp--tvgvdffarlie~~-pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDP--TVGVDFFARLIELR-PGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCC--ccchHHHHHHHhcC-CCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 346789999999999999999999888754443 55555443 3332 467789999999999999999999999999
Q ss_pred eEEEEEecCCCCChh-----HHHHHHHHHHcCCC-EEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 568 IAVIVVAADDGIRPQ-----TNEAIAHAKAAGVP-IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 568 iVILVVDAsdgv~~Q-----t~E~I~~ak~~~IP-IIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
++++|+|+++..... ..|...++.....+ +.+|+.|+||.. .+.++.......++ ..|+++|
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------M~FVETS 154 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------MAFVETS 154 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---------ceEEEec
Confidence 999999999754333 33333333322233 788999999953 22333333333344 5699999
Q ss_pred cCCCCChhhHHHHHHH
Q 001915 639 ALKGEKVDDLLETIML 654 (996)
Q Consensus 639 AktGeGIdEL~eaIl~ 654 (996)
|++|.|+++.|..|.+
T Consensus 155 ak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ccCCCcHHHHHHHHHH
Confidence 9999999999998864
No 249
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=142.82 Aligned_cols=161 Identities=21% Similarity=0.280 Sum_probs=111.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|..|+|||||+++|.+..+.....+.++......... .......+.+|||+|++.|..++..++..++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIE--PYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEE--eCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 7899999999999999999999888766655444333222222 12235679999999999999999999999999999
Q ss_pred EEecCC-CCChh-HHHHHHHHHH---cCCCEEEEecccCCCCCChhH--HHHHH---------HhcCCCCCCCCCCCcEE
Q 001915 572 VVAADD-GIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGANPER--VMQEL---------SSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 572 VVDAsd-gv~~Q-t~E~I~~ak~---~~IPIIVVINKiDL~~a~~er--v~~eL---------~~~gl~~e~~gg~ipvV 635 (996)
|+|..+ ....+ ..++...+.. .+.|+|+++||+|+....... +...+ ......... ....++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 161 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEV--ANPALL 161 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhh--ccccee
Confidence 999986 22222 2333334333 258999999999996543211 11111 110001111 123389
Q ss_pred EeccC--CCCChhhHHHHHHHHH
Q 001915 636 QISAL--KGEKVDDLLETIMLVA 656 (996)
Q Consensus 636 eISAk--tGeGIdEL~eaIl~la 656 (996)
++||+ ++.+|+++|..++...
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHH
Confidence 99999 9999999999887654
No 250
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.52 E-value=1.8e-13 Score=146.05 Aligned_cols=146 Identities=27% Similarity=0.231 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch-------HHHHHHhhhc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARGARV 565 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-------~~mr~rga~~ 565 (996)
+|+++|.+|+|||||+++|.+........+++|.+.....+. + .+..+++|||||+..+ .......++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~--~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLE--Y--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEE--E--CCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 689999999999999999998776556666777654333332 2 3467999999997432 2234456799
Q ss_pred CCeEEEEEecCCCCCh------------------------------------------hHHHHH-HHHHH----------
Q 001915 566 TDIAVIVVAADDGIRP------------------------------------------QTNEAI-AHAKA---------- 592 (996)
Q Consensus 566 ADiVILVVDAsdgv~~------------------------------------------Qt~E~I-~~ak~---------- 592 (996)
+|++++|+|+++.... -+.+.+ ..+++
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 9999999998753210 000111 11111
Q ss_pred -----------------cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 593 -----------------AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 593 -----------------~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+|+++|+||+|+.. .+... .+. ...+++++||++|.|+++|++.|...
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~--~~~~~-~~~----------~~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS--IEELD-LLA----------RQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCC--HHHHH-HHh----------cCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 2368999999999853 22222 111 12458999999999999999998754
No 251
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.1e-14 Score=157.56 Aligned_cols=115 Identities=36% Similarity=0.373 Sum_probs=97.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc------------------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
.+|+||.|.++||||...+|+.-... .....|||.. ...+.+++++++++++|||||.
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiq----saav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQ----SAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceee----eeeeecccccceEeeecCCCcc
Confidence 47999999999999999998632111 1233455544 3445567888999999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN 610 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~ 610 (996)
+|+....|.++.-|+++.|+|++-|+.+|+...|+++...++|-++++||||+..++
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999986554
No 252
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.50 E-value=2.2e-13 Score=148.39 Aligned_cols=166 Identities=25% Similarity=0.343 Sum_probs=108.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC------ccchHHHH-
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG------HEAFGAMR- 559 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG------hE~F~~mr- 559 (996)
..+...|+++|.||+|||||.|.+.+.++. ++....+|++- +...+......+.|+|||| |..+..++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~----ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR----ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee----eeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 457789999999999999999999998876 55666677663 2222334556899999999 22222222
Q ss_pred -----HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEecccCCCCCCh--------------hHHHHHHH
Q 001915 560 -----ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKDGANP--------------ERVMQELS 619 (996)
Q Consensus 560 -----~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IPIIVVINKiDL~~a~~--------------erv~~eL~ 619 (996)
...+..||++++|+|+++.-.+-....+..+.. .++|-|++.||+|...... .....+..
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 245688999999999996222222222333332 3799999999999743110 00011111
Q ss_pred -hcCCCC--------CCCCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 620 -SIGLMP--------EDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 620 -~~gl~~--------e~~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
+..... -.|.+.-.+|++||++|+||++|.++|+.++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 111111 11434456999999999999999999987664
No 253
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.49 E-value=8.1e-14 Score=138.04 Aligned_cols=156 Identities=23% Similarity=0.275 Sum_probs=114.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
..++++|--++|||||+|.+....+. +.-+.|.+...+.+. .....+.+||.||+..|..|+.+|++.++++++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 45899999999999999987654443 334457666555543 345789999999999999999999999999999
Q ss_pred EEecCCCCC-hhHHHH----HHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIR-PQTNEA----IAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~-~Qt~E~----I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+.|.-. +..++. +....-.++|++|.+||+|++++-. ..+..++--..+. ...+-+|.+|++...||
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sit----dREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSIT----DREVCCFSISCKEKVNI 170 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccc----cceEEEEEEEEcCCccH
Confidence 999998321 112222 2222336899999999999987633 3333333222221 23577999999999999
Q ss_pred hhHHHHHHHHHH
Q 001915 646 DDLLETIMLVAE 657 (996)
Q Consensus 646 dEL~eaIl~lae 657 (996)
+-+++||.....
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.48 E-value=4.5e-13 Score=134.94 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=113.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..|..+|.|+|..|+|||||+++|.+..... -..|.+..+.++. .+.+.+++||..|+..+...|..|+..+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 3456899999999999999999998765321 2235444444433 35678999999999999999999999999
Q ss_pred eEEEEEecCCCCC-hhHHHHHHH----HHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIR-PQTNEAIAH----AKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~-~Qt~E~I~~----ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+.|+|||.+|... ..+...+.. -+.++.|++|+.||.|++++ +.+.+...+.-..+.. ...++++-|||.+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k---s~~~~l~~cs~~t 162 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK---SHHWRLVKCSAVT 162 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc---ccCceEEEEeccc
Confidence 9999999988543 333333332 23468899999999999754 3344433222222211 1246899999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|+++.+-++||..
T Consensus 163 ge~l~~gidWL~~ 175 (185)
T KOG0073|consen 163 GEDLLEGIDWLCD 175 (185)
T ss_pred cccHHHHHHHHHH
Confidence 9999999999874
No 255
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-13 Score=134.45 Aligned_cols=150 Identities=22% Similarity=0.234 Sum_probs=109.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++-.|+|+.|+|||.||..+...++...-...|...++. --+.+.+..+++++|||+|++.|......+++.+.+++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgt--riievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecce--eEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 3577899999999999999999887766555444433333 33445788899999999999999999999999999999
Q ss_pred EEEecCCCCChhHHHH-HHHHHH---cCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQTNEA-IAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E~-I~~ak~---~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|+|++.......... +..++. .+.-+++++||.||.. ...++.++...+.+ ..|+++||++|.
T Consensus 89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng---------l~fle~saktg~ 159 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG---------LMFLEASAKTGQ 159 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC---------eEEEEecccccC
Confidence 9999986433222221 122222 2344889999999953 23455555555544 458999999999
Q ss_pred ChhhHHHH
Q 001915 644 KVDDLLET 651 (996)
Q Consensus 644 GIdEL~ea 651 (996)
|+++.|-.
T Consensus 160 nvedafle 167 (215)
T KOG0097|consen 160 NVEDAFLE 167 (215)
T ss_pred cHHHHHHH
Confidence 99986643
No 256
>PTZ00099 rab6; Provisional
Probab=99.47 E-value=3.1e-13 Score=138.20 Aligned_cols=124 Identities=21% Similarity=0.179 Sum_probs=90.2
Q ss_pred ceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHH-HHHHHHH---HcCCCEEE
Q 001915 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTN-EAIAHAK---AAGVPIVI 599 (996)
Q Consensus 524 iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~-E~I~~ak---~~~IPIIV 599 (996)
.|.++.++...+.+++..+.+.||||||++.|..++..+++.+|++|||||+++....+.. .++..+. ..++|+|+
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piil 90 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 90 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4666666666666778888999999999999999999999999999999999985433222 2222222 13678999
Q ss_pred EecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 600 AINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 600 VINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
|+||+|+... ..++.......+ ...++++||++|.||+++|++|....
T Consensus 91 VgNK~DL~~~~~v~~~e~~~~~~~~---------~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 91 VGNKTDLGDLRKVTYEEGMQKAQEY---------NTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEECcccccccCCCHHHHHHHHHHc---------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999532 222222222211 24689999999999999999997543
No 257
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-13 Score=140.88 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=120.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
.....+|+++|--++||||++.+|....+..+ -.|.+.+...+.+ ++..+++||..|++.++..+..|+..++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCc
Confidence 34557899999999999999999987665543 2366655555544 3678999999999999999999999999
Q ss_pred eEEEEEecCCCC--ChhHHHHHHHHHH---cCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGI--RPQTNEAIAHAKA---AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv--~~Qt~E~I~~ak~---~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|||+|.+|.. .+.-.+..+.+.. .+.|+++..||.|++++ +..++.+.|.-+.+....| .+..|+|.+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w----~iq~~~a~~ 162 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW----HIQSTCAIS 162 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc----EEeeccccc
Confidence 999999999843 2222223333322 36899999999999875 4566777776666655544 488899999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|+|+.+-++||...
T Consensus 163 G~GL~egl~wl~~~ 176 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNN 176 (181)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999999754
No 258
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=8.2e-14 Score=135.99 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=112.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEec
Q 001915 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (996)
Q Consensus 496 IVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDA 575 (996)
++|++++|||.|+-++....+..+.. -.|.+|++...-+..++..+++++|||+|+|.|.+....|++.+|..+|++|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~f-istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce-eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 68999999999997776544432221 13667777777777889999999999999999999999999999999999999
Q ss_pred CCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 576 DDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 576 sdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
.+..+.... .++..++ ...+.+.+++||||+.... .+.-..-...+ .+||.++||++|.|++-.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y---------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY---------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH---------CCCceeccccccccHhHH
Confidence 875443322 2222222 2357789999999994311 11111112222 279999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 001915 649 LETIMLVAELQELKANPH 666 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~ 666 (996)
|-.|........+...|.
T Consensus 152 f~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 152 FLAIAEELKKLKMGAPPE 169 (192)
T ss_pred HHHHHHHHHHhccCCCCC
Confidence 988764333333334443
No 259
>PLN00023 GTP-binding protein; Provisional
Probab=99.46 E-value=6.5e-13 Score=148.02 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-------------CccccEEEEeCCCccch
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-------------gk~~~ItfIDTPGhE~F 555 (996)
....+|+|+|+.++|||||+++|....+.....+ |.+..++...+.++ +..+.+.||||+|++.|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~p--TIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQ--TIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCC--ceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 4557999999999999999999998776544333 44443333323332 23567999999999999
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHH-HHHHHHHH---------------cCCCEEEEecccCCCC
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTN-EAIAHAKA---------------AGVPIVIAINKIDKDG 608 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~-E~I~~ak~---------------~~IPIIVVINKiDL~~ 608 (996)
..++..+++.+|++|+|||+++....... .++..+.. .++|+|||+||+||..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999984333222 22222322 1489999999999954
No 260
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-13 Score=153.80 Aligned_cols=212 Identities=29% Similarity=0.389 Sum_probs=151.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-------------------------------ccccCCceeeeceEEEEE
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQV 535 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-------------------------------~se~gGiTqdI~a~~V~i 535 (996)
...++.+++++||+++||||+-..|...... .....|-|..++...++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3467789999999999999987765311000 011234555555544443
Q ss_pred eeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-------ChhHHHHHHHHHHcCCC-EEEEecccCCC
Q 001915 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (996)
Q Consensus 536 ~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-------~~Qt~E~I~~ak~~~IP-IIVVINKiDL~ 607 (996)
...+++++|+|||..|...+..++.+||+.+||+.+..+. -.||+++..+++..++. +|+++||||-+
T Consensus 155 ----e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 155 ----ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred ----cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 3457999999999999999999999999999999997532 45999999999998886 89999999985
Q ss_pred C--CChhH-------HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHH-------HHHHHHhhhcCCCCCCcc
Q 001915 608 G--ANPER-------VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM-------LVAELQELKANPHRNAKG 671 (996)
Q Consensus 608 ~--a~~er-------v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl-------~lael~elk~~p~r~~~g 671 (996)
. |+.++ +...|...++... .+..|+++|..+|.++.+..+... .+..+++ -.+.+|...|
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~---~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~G 306 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPK---PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNG 306 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCC---CCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCC
Confidence 4 44333 2333444454332 367899999999999998775221 1111222 2344666666
Q ss_pred eEEEEeee--cCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 672 TVIEAGLH--KSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 672 ~Vies~~d--kgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
.+.-.-.+ +..|+++.+.+.+|++++|+.+++-+.
T Consensus 307 P~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPn 343 (501)
T KOG0459|consen 307 PIRCPVANKYKDMGTVVGGKVESGSIKKGQQLVVMPN 343 (501)
T ss_pred CEEeehhhhccccceEEEEEecccceecCCeEEEccC
Confidence 66544333 567999999999999999999988764
No 261
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.45 E-value=4e-13 Score=148.56 Aligned_cols=213 Identities=24% Similarity=0.348 Sum_probs=150.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeceEEEEEe---------------------
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP--------------------- 536 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se--------------~gGiTqdI~a~~V~i~--------------------- 536 (996)
.+|+++|.+|+||||||.-|.+.....+. ..|-|..++.-..-+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 47999999999999999987654433211 1122221111001000
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhH-
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER- 613 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~er- 613 (996)
.+....-++|||.+|||.|......++ +..|..+|++-++-|+..-+.|++.++...++|+++|++|+|.+.++.-+
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHH
Confidence 011223589999999999998877776 67899999999999999999999999999999999999999998766422
Q ss_pred HHHH----HHhcCCC---------------CCCC--CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcce
Q 001915 614 VMQE----LSSIGLM---------------PEDW--GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGT 672 (996)
Q Consensus 614 v~~e----L~~~gl~---------------~e~~--gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~ 672 (996)
.+.. +...+.. ...| ..-+|+|.+|..+|+|++-|...|-.+.... ..+.+.+++..
T Consensus 294 tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~--~~~E~~PAeFQ 371 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRR--QLNENDPAEFQ 371 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCccc--ccccCCCccee
Confidence 1111 1111110 0011 1347999999999999977665554332211 22445567778
Q ss_pred EEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 673 VIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 673 Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
|-+.+-..|.|+++.+...+|+++.+|.+.+|+.
T Consensus 372 IDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd 405 (641)
T KOG0463|consen 372 IDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPD 405 (641)
T ss_pred ecceEecCCcceEeecceeeeeEEeccEEEecCC
Confidence 8888888999999999999999999999999873
No 262
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.1e-14 Score=139.79 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC---------CccccEEEEeCCCccchHHHHHHhh
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD---------GKLQPCVFLDTPGHEAFGAMRARGA 563 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id---------gk~~~ItfIDTPGhE~F~~mr~rga 563 (996)
+...+|++|+||||+|.++...++...-+ .|.+|++....+-+. +..+.+++|||+|+|.|.++....+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFI--sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFI--STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeE--EEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 45678999999999999988776653332 355555544333222 2345789999999999999999999
Q ss_pred hcCCeEEEEEecCCCCChh-HHHHHHHHH----HcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 564 RVTDIAVIVVAADDGIRPQ-TNEAIAHAK----AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Q-t~E~I~~ak----~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
+.|-+++|++|.+..-..- .+.++.+++ ..+..+|+++||+||.+.. .++...-..+++ +|||
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg---------lPYf 159 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG---------LPYF 159 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC---------CCee
Confidence 9999999999998743222 233344333 2344599999999996421 222232223333 6999
Q ss_pred EeccCCCCChhhHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIML 654 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~ 654 (996)
++||-+|.||++..+.|+.
T Consensus 160 ETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLD 178 (219)
T ss_pred eeccccCcCHHHHHHHHHH
Confidence 9999999999998877664
No 263
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.2e-12 Score=144.24 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=111.8
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc------cchHHH
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EAFGAM 558 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh------E~F~~m 558 (996)
.......|.|+|.|+||+|||||++++...+..+.+++.||.++...++.. +..+++++||||. |...-.
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~----~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER----GYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec----CCceEEEecCCcccCCChHHhcHHH
Confidence 344457789999999999999999999999999999999999887666553 3458999999992 222222
Q ss_pred HHH--hh-hcCCeEEEEEecCCCCChhHHHH---HHHHH-HcCCCEEEEecccCCCC-CChhHHHHHHHhcCCCCCCCCC
Q 001915 559 RAR--GA-RVTDIAVIVVAADDGIRPQTNEA---IAHAK-AAGVPIVIAINKIDKDG-ANPERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 559 r~r--ga-~~ADiVILVVDAsdgv~~Qt~E~---I~~ak-~~~IPIIVVINKiDL~~-a~~erv~~eL~~~gl~~e~~gg 630 (996)
+.. .+ +..++++|++|.+..+-....+. +..++ ..+.|+++|+||+|..+ ...+++...+...+.
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~------- 310 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGG------- 310 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcc-------
Confidence 222 22 67899999999997443222222 22222 24579999999999863 233344433333321
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.....+|+..+.+++.+.+.+...+
T Consensus 311 -~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 311 -EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred -ccccceeeeehhhHHHHHHHHHHHh
Confidence 2356788999999999988877553
No 264
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=7.6e-13 Score=156.81 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=109.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch------HHHHHHhh--
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAMRARGA-- 563 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F------~~mr~rga-- 563 (996)
.+|+++|.||+|||||+|+|++.+..++..+|.|.+.- +..+..++..++++|.||.-.+ .....+++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkk----eg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKK----EGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEE----EEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 46999999999999999999999999999999997743 2233344567999999993222 12233344
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
...|++|-|+|+++ -+......-++.+.++|+|+++|++|..... ..--.+.|++. -.+|++++||++|
T Consensus 80 ~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~--------LGvPVv~tvA~~g 149 (653)
T COG0370 80 GKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKL--------LGVPVVPTVAKRG 149 (653)
T ss_pred CCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHH--------hCCCEEEEEeecC
Confidence 56799999999986 2333444455667899999999999973211 11111222221 1379999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.|++++++.+....+
T Consensus 150 ~G~~~l~~~i~~~~~ 164 (653)
T COG0370 150 EGLEELKRAIIELAE 164 (653)
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999976543
No 265
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=142.18 Aligned_cols=161 Identities=24% Similarity=0.311 Sum_probs=117.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
+..+++|+|...+|||+|+..+....+...+.+... +-|...+.++ ++.+.+.+|||+|+++|..+|...+..+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF---dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF---DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE---ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence 457899999999999999998888777666655333 4566667774 889999999999999999999889999999
Q ss_pred EEEEEecCCCCC-----hhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCC---------CCCCCCcE
Q 001915 569 AVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPE---------DWGGDIPM 634 (996)
Q Consensus 569 VILVVDAsdgv~-----~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e---------~~gg~ipv 634 (996)
+|++|++.+... ..|...+++.. .++|+|+|++|.||.. +. .....+...+...- ...+-..|
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~-d~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRD-DP-STLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhh-CH-HHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 999999987432 22222222222 5799999999999962 11 22233332222111 11234789
Q ss_pred EEeccCCCCChhhHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~la 656 (996)
++|||++..|+.+.|+..+..+
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHH
Confidence 9999999999999999877554
No 266
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.42 E-value=1.4e-12 Score=135.06 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=99.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc-ccc--C--CceeeeceEEEEEeeCCccccEEEEeCCCccch-----HHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEA--G--GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-----GAMRA 560 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~-se~--g--GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-----~~mr~ 560 (996)
+++|+|+|.+|+|||||+|+|++..... +.. + .+|+....| . ......+++|||||.... ..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~----~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY----P-HPKFPNVTLWDLPGIGSTAFPPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee----e-cCCCCCceEEeCCCCCcccCCHHHHHHH
Confidence 4689999999999999999999754321 110 1 122221111 1 112346999999996432 11333
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC----------hhHHHHHHHhcC--CCCCCC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----------PERVMQELSSIG--LMPEDW 628 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~----------~erv~~eL~~~g--l~~e~~ 628 (996)
..+..+|++++|.| +.+.......+..++..+.|+++|+||+|+...+ .+++.+++...- ......
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 44677899888754 4566777777788888899999999999983211 123333332210 000111
Q ss_pred CCCCcEEEeccC--CCCChhhHHHHHHH
Q 001915 629 GGDIPMVQISAL--KGEKVDDLLETIML 654 (996)
Q Consensus 629 gg~ipvVeISAk--tGeGIdEL~eaIl~ 654 (996)
....++|.+|+. .+.|+..|.+.|..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~ 181 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence 224589999998 68999999998874
No 267
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.40 E-value=5.9e-13 Score=124.80 Aligned_cols=109 Identities=24% Similarity=0.349 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc----ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va----~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
+|+|+|+.++|||||+++|.+.... .....+.+... ...........+.|||++|++.|.......+..+|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 76 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGV----DVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADA 76 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEE----EEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEE----EEEEecCCceEEEEEecCccceecccccchhhcCcE
Confidence 6899999999999999999977665 11222222221 122234455569999999998888776666899999
Q ss_pred EEEEEecCCCCChhH-HH---HHHHHHH--cCCCEEEEecccC
Q 001915 569 AVIVVAADDGIRPQT-NE---AIAHAKA--AGVPIVIAINKID 605 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E---~I~~ak~--~~IPIIVVINKiD 605 (996)
+|+|||+++....+. .+ .+..... .++|+|||+||.|
T Consensus 77 ~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 77 VILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999998442222 11 2233332 4699999999998
No 268
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=2.3e-12 Score=121.52 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc---------hHHHHHHh
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRARG 562 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~---------F~~mr~rg 562 (996)
+|+|+|.+|+|||||+|+|.+.+. ..+...++|++.....+.+ ....+.|+||||... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----NNKKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----ceeeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 589999999999999999998643 4666678888873333332 334678999999421 12233444
Q ss_pred hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecc
Q 001915 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK 603 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINK 603 (996)
+..+|++++|+|+++.......+.++.++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 58899999999988855555667777776 78999999998
No 269
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=5.8e-12 Score=138.11 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc-------cchHHHHHHhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFGAMRARGA 563 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-------E~F~~mr~rga 563 (996)
-..|.++|-||+||||||++|...+-.+.+++.||.....-.+.+ ++ ...+++-|.||. .-......+.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y--dd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY--DD-FSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec--cc-cceeEeccCccccccccccCcccHHHHHHH
Confidence 356899999999999999999999888888899998776665543 22 234999999992 22444566778
Q ss_pred hcCCeEEEEEecCCCC--ChhH-HH-HHHHHH-----HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 564 RVTDIAVIVVAADDGI--RPQT-NE-AIAHAK-----AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv--~~Qt-~E-~I~~ak-----~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
..|++.+||+|++.+. .+++ .. .+..+. ..+.|.+||+||+|++++.... ..+|...- ....+
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~l-------q~~~V 344 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRL-------QNPHV 344 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHc-------CCCcE
Confidence 8999999999998762 2222 11 222222 1467999999999996433222 23333321 12359
Q ss_pred EEeccCCCCChhhHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIM 653 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl 653 (996)
|++||++++|+.+|++.|.
T Consensus 345 ~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 345 VPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred EEeeeccccchHHHHHHHh
Confidence 9999999999999998874
No 270
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-12 Score=141.63 Aligned_cols=212 Identities=25% Similarity=0.313 Sum_probs=148.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC---CccccccCCceeeeceEEEEEee-C--------------------------C
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPV-D--------------------------G 539 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s---~va~se~gGiTqdI~a~~V~i~i-d--------------------------g 539 (996)
-..+|+-+||+-|||||++.++.+- +|...-...||+.+++....++- + +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 3468999999999999999998753 33344456778777764433210 0 0
Q ss_pred c------cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC-CCChhHHHHHHHHHHcCCC-EEEEecccCCCCCCh
Q 001915 540 K------LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (996)
Q Consensus 540 k------~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~ 611 (996)
. -+++.|+|+|||+-+.+.+..++...|+++|++++++ ..++||-|++....-+... +|++-||+|+...+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~- 195 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKES- 195 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHH-
Confidence 0 1357899999999999999999999999999999997 4589999998777766654 89999999995432
Q ss_pred hHHHHHHHh-cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeee--------cCC
Q 001915 612 ERVMQELSS-IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSK 682 (996)
Q Consensus 612 erv~~eL~~-~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~d--------kgr 682 (996)
...++... ..|.........|++++||.-+.||+-+.+.|..-... ...+...++...|+.++-. .-.
T Consensus 196 -~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv--PvRdf~s~prlIVIRSFDVNkPG~ev~~lk 272 (466)
T KOG0466|consen 196 -QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV--PVRDFTSPPRLIVIRSFDVNKPGSEVDDLK 272 (466)
T ss_pred -HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC--CccccCCCCcEEEEEeeccCCCCchhhccc
Confidence 11111111 11222222345799999999999999999999743221 1112223445567665532 235
Q ss_pred CcEEEEEEEcCEeccCcEEEEcc
Q 001915 683 GPVATFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 683 G~Vat~lV~~GtLk~GD~VviG~ 705 (996)
|-++-+-+..|.|+.||.|-+.+
T Consensus 273 Ggvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 273 GGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred CccccchhhhhhhhcCcEEEecC
Confidence 77888899999999999987654
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.34 E-value=1.1e-11 Score=146.67 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=81.3
Q ss_pred ccEEEEeCCCc-cc----hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcC--CCEEEEecccCCCCCC---h
Q 001915 542 QPCVFLDTPGH-EA----FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG--VPIVIAINKIDKDGAN---P 611 (996)
Q Consensus 542 ~~ItfIDTPGh-E~----F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~--IPIIVVINKiDL~~a~---~ 611 (996)
..+.|+||||. .. +..++...+..+|+++||+|+..+..+.+.+.++.++..+ .|+|+|+||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 46899999993 32 4455666889999999999999988888888888888777 4999999999985322 3
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
+.+...+... +... ......+|+|||++|.|+++|++.|..
T Consensus 310 E~Lle~V~~~-L~q~-~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 310 DQVRALISGT-LMKG-CITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHH-HHhc-CCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3343333211 0000 011346999999999999999999864
No 272
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=2.5e-11 Score=128.94 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=108.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v--a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ 565 (996)
...+..|+|+|++|+|||||++.|..... ......|+ +.+. ......++|+||||+- ......+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~---~~~~~~i~~vDtPg~~---~~~l~~ak~ 103 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVV---TGKKRRLTFIECPNDI---NAMIDIAKV 103 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEE---ecCCceEEEEeCCchH---HHHHHHHHh
Confidence 45677899999999999999999985421 11112221 1111 1245679999999964 223345689
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHHcCCCE-EEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI-VIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 566 ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPI-IVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|++++|+|+.+++..++.+.+..+...++|. |+++||+|+.... .+.+...+...-. . .+..+.+++++||++.
T Consensus 104 aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~-~-~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW-T-EVYQGAKLFYLSGIVH 181 (225)
T ss_pred cCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH-H-hhCCCCcEEEEeeccC
Confidence 99999999999999999999888888889995 5599999996422 2334444433111 0 1112468999999988
Q ss_pred CChh--hHHHHHHHHHHHHhhhcCCCCCCcceEE
Q 001915 643 EKVD--DLLETIMLVAELQELKANPHRNAKGTVI 674 (996)
Q Consensus 643 eGId--EL~eaIl~lael~elk~~p~r~~~g~Vi 674 (996)
-.+. +.. .++........+....+...++++
T Consensus 182 ~~~~~~e~~-~~~r~i~~~~~~~~~~r~~r~y~~ 214 (225)
T cd01882 182 GRYPKTEIH-NLARFISVMKFRPLNWRNSHPYVL 214 (225)
T ss_pred CCCCHHHHH-HHHHHHHhCCCCCCeeecCCCeEE
Confidence 5442 222 223333333333333344555543
No 273
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=6e-12 Score=127.99 Aligned_cols=161 Identities=24% Similarity=0.304 Sum_probs=112.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-ccccc--C--CceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhh
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEA--G--GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA 563 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~--g--GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga 563 (996)
.....|.|+|.-++|||||+.++..... +.... . ..|.+....++.+ . +..+.|||..|++...+++..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHH
Confidence 3456799999999999999998764322 11111 1 1244444444443 2 45799999999999999999999
Q ss_pred hcCCeEEEEEecCCCCCh-----hHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 564 RVTDIAVIVVAADDGIRP-----QTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~-----Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
..|+++|++||+++.... +....+.+-...++|+++.+||.|+.++-. .++...+.......+ .+.++.+|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~---rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPR---RDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCC---ccCccccc
Confidence 999999999999984322 223334444557999999999999965432 222222222222222 46899999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++|+||++-.+|+..-.
T Consensus 168 Sal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 9999999999999997543
No 274
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-11 Score=147.00 Aligned_cols=117 Identities=27% Similarity=0.411 Sum_probs=95.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccc------------ccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAA------------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA 557 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~s------------e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~ 557 (996)
...+|+++.|+|||||||.+.|..++...+ .....|++|+...-.+....+.+.++|||+|||-+|..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 446899999999999999999985443221 11123444444333333445678999999999999999
Q ss_pred HHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCC
Q 001915 558 MRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 558 mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL 606 (996)
........+|+++++||+.+|+..||...++++...+...|+|+||||.
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999999999999999999999889999999999994
No 275
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.9e-12 Score=145.82 Aligned_cols=120 Identities=30% Similarity=0.457 Sum_probs=96.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-----------------ccCCceeeeceEEEEE-eeCCccccEEEEe
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-----------------EAGGITQGIGAYKVQV-PVDGKLQPCVFLD 548 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~s-----------------e~gGiTqdI~a~~V~i-~idgk~~~ItfID 548 (996)
...+-.+|+++||-.||||+|++.|........ ...|.+++..-.++.. ...++.+-++|+|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 344556899999999999999999974332211 1224444333222221 2356778899999
Q ss_pred CCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCC
Q 001915 549 TPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 549 TPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL 606 (996)
||||..|...+.+.++.+|+++||||+.+|++.++..+++++-..+.|+++|+||+|+
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999999999999999999999999999999999997
No 276
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=2.1e-11 Score=137.93 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=108.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC---------ccchHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG---------HEAFGAMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG---------hE~F~~mr 559 (996)
..-|.|+++|-.|+|||||+|+|.+....+...-..|-+.+...+.+. .+..+.+-||=| .++|.+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~---~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG---DGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC---CCceEEEecCccCcccCChHHHHHHHHHH
Confidence 456789999999999999999999887777777777888777776653 256799999999 24454432
Q ss_pred HHhhhcCCeEEEEEecCCCCChh-HHHHHHHHH---HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQ-TNEAIAHAK---AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Q-t~E~I~~ak---~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
.....+|++++|+|++++...+ .......+. ...+|+|+|.||+|+..... ....+... ....+
T Consensus 267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~---------~~~~v 334 (411)
T COG2262 267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERG---------SPNPV 334 (411)
T ss_pred -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhc---------CCCeE
Confidence 3457899999999999963222 222222333 35689999999999753222 11111111 11489
Q ss_pred EeccCCCCChhhHHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~la 656 (996)
++||++|.|++.|++.|....
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHh
Confidence 999999999999999987543
No 277
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.5e-12 Score=138.32 Aligned_cols=212 Identities=24% Similarity=0.322 Sum_probs=149.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccc--------------cCCceeeeceEEEEEe-----------------eCCc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP-----------------VDGK 540 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se--------------~gGiTqdI~a~~V~i~-----------------idgk 540 (996)
.+|+++|..|+|||||+.-|.......+. ..|-|..|....+-+. .+..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 57999999999999999988654433221 1122322221111110 0112
Q ss_pred cccEEEEeCCCccchHHHHHHhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC-ChhHHHHH
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQE 617 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~e 617 (996)
..-++|+|.+||..|......++ -..|.++||++++.|+...++|++.++.+.++|++|+++|+|+... ..++..++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHH
Confidence 34689999999999988777776 4569999999999999999999999999999999999999999653 23444444
Q ss_pred HHh----cCCCCC-----------------CCCCCCcEEEeccCCCCChhhHHHHHHHHHH------HHhhhcCCCCCCc
Q 001915 618 LSS----IGLMPE-----------------DWGGDIPMVQISALKGEKVDDLLETIMLVAE------LQELKANPHRNAK 670 (996)
Q Consensus 618 L~~----~gl~~e-----------------~~gg~ipvVeISAktGeGIdEL~eaIl~lae------l~elk~~p~r~~~ 670 (996)
+.. .+...- --+.-+|+|.+|..+|+|++-|...|..+.. ..++. ..++.
T Consensus 328 l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~---q~~~e 404 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLV---QLPAE 404 (591)
T ss_pred HHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHh---cCcce
Confidence 332 221110 0123479999999999999876655432221 12222 22455
Q ss_pred ceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 671 g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
..|-|++..+..|+|+-+.+..|.|+.|+.+.+|+.
T Consensus 405 FqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~ 440 (591)
T KOG1143|consen 405 FQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPM 440 (591)
T ss_pred eeHhHeecCCcccccccceeeeceeccCceeEeecC
Confidence 667788888999999999999999999999999974
No 278
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.29 E-value=3.5e-11 Score=124.11 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=100.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccc--cCCceeeeceEEEEEeeCCccccEEEEeCCCccch-------HHHHHHh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARG 562 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se--~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-------~~mr~rg 562 (996)
.+|+++|.+|+|||||+|.|++....... ..+.|++...+.... .+..++++||||...+ .....+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----~~~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----DGRRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----CCeEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 37999999999999999999987654333 456777765555433 3457999999994332 1222222
Q ss_pred ----hhcCCeEEEEEecCCCCChhHHHHHHHHHHc-C----CCEEEEecccCCCCCC-hhH--------HHHHHHhcCCC
Q 001915 563 ----ARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-G----VPIVIAINKIDKDGAN-PER--------VMQELSSIGLM 624 (996)
Q Consensus 563 ----a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~-~----IPIIVVINKiDL~~a~-~er--------v~~eL~~~gl~ 624 (996)
....|++|||+++.+ +...+...++.++.. + .++|+++|++|..... .+. +...+...+
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-- 153 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-- 153 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC--
Confidence 356799999999988 777777777776553 2 5789999999974322 111 111122211
Q ss_pred CCCCCCCCcEEEe-----ccCCCCChhhHHHHHHHHHH
Q 001915 625 PEDWGGDIPMVQI-----SALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 625 ~e~~gg~ipvVeI-----SAktGeGIdEL~eaIl~lae 657 (996)
+. ++.. |+..+.++.+|++.|..+..
T Consensus 154 -----~r--~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 154 -----GR--YVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred -----Ce--EEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 11 2222 46778899999999876643
No 279
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.8e-11 Score=119.49 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=112.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|..+|-.++||||+|..|.-...... -.|.+++...+++ ++..+++||..|+...+..|.+|+..+.++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~---ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc---ccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceE
Confidence 457899999999999999999985543221 1244544444443 457899999999999999999999999999
Q ss_pred EEEEecCCCC--ChhHHH---HHHHHHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGI--RPQTNE---AIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv--~~Qt~E---~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|+|..+.- .+.-.| ++.+-.....+++|..||.|++++ .+.++...+.-..+....| -+.++||.+|+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W----~vqp~~a~~gd 164 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW----YVQPSCALSGD 164 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc----Eeeccccccch
Confidence 9999988641 111122 222233457889999999999876 4555555544333333333 48899999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+.|-|.||...
T Consensus 165 gL~eglswlsnn 176 (180)
T KOG0071|consen 165 GLKEGLSWLSNN 176 (180)
T ss_pred hHHHHHHHHHhh
Confidence 999999998754
No 280
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.26 E-value=1.6e-11 Score=114.80 Aligned_cols=72 Identities=60% Similarity=0.915 Sum_probs=67.9
Q ss_pred CcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee----------------------EeeccccccCCCeEEEe
Q 001915 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK----------------------IIGLNGVPIAGDEFEVV 726 (996)
Q Consensus 669 ~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk----------------------V~Gl~g~P~aGd~~~vv 726 (996)
+.|+|+|+..++++|++++++|++|+|++||+|++|..||+ |.||+++|.+||.|+++
T Consensus 1 a~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~ 80 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEe
Confidence 46899999999999999999999999999999999999998 67999999999999999
Q ss_pred ccHHHHHHHHHHHH
Q 001915 727 DSLDVAREKAEARA 740 (996)
Q Consensus 727 ~~e~~Ar~~a~~r~ 740 (996)
++|+.|++++++|.
T Consensus 81 ~se~~Ak~~~~~r~ 94 (95)
T cd03702 81 ESEKEAKEIAEYRK 94 (95)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998774
No 281
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.25 E-value=1.1e-10 Score=130.48 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=62.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEe-------------------eCC-ccccEEEEeCCCc-
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VDG-KLQPCVFLDTPGH- 552 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~-------------------idg-k~~~ItfIDTPGh- 552 (996)
|+|+|.+|+|||||+++|++........+++|++.......+. +++ ....++||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999888777777777766554333321 122 3367999999996
Q ss_pred ---cchHHHHHH---hhhcCCeEEEEEecCC
Q 001915 553 ---EAFGAMRAR---GARVTDIAVIVVAADD 577 (996)
Q Consensus 553 ---E~F~~mr~r---ga~~ADiVILVVDAsd 577 (996)
+.+..+... .++.||++++|||+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 445544444 5799999999999973
No 282
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.23 E-value=8.9e-11 Score=128.64 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=83.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccccc--------CCceeeeceEEEEEeeCCccccEEEEeCCCccchH------
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------ 556 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~--------gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~------ 556 (996)
.++|+++|++|+|||||+|+|++..+..... ...|..+..+...+..++....++||||||...+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 3589999999999999999999877653321 12344444555555555666789999999942221
Q ss_pred ------------H---H-----HHHhh--hcCCeEEEEEecCC-CCChhHHHHHHHHHHcCCCEEEEecccCCCC
Q 001915 557 ------------A---M-----RARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 557 ------------~---m-----r~rga--~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~ 608 (996)
. . +...+ ..+|+++++++.+. ++.+++.+.++.+.. ++|+|+|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 1 1 11122 25788999998874 788888888888875 899999999999853
No 283
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.22 E-value=5.1e-11 Score=131.28 Aligned_cols=149 Identities=29% Similarity=0.286 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc-cchHHH------HHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-EAFGAM------RARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-E~F~~m------r~rga~ 564 (996)
-.|+++|.|++||||||++|.+....+.+++.+|... ++-.+..++..++++|+||. +....- ...-++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~----VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP----VPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc----ccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 4799999999999999999999988888888888653 33334456678999999993 222221 223458
Q ss_pred cCCeEEEEEecCCCC---------------------------------------------ChhHHH--------------
Q 001915 565 VTDIAVIVVAADDGI---------------------------------------------RPQTNE-------------- 585 (996)
Q Consensus 565 ~ADiVILVVDAsdgv---------------------------------------------~~Qt~E-------------- 585 (996)
.||++|+|+|+.... ...+..
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 999999999998421 001110
Q ss_pred ---------HHHHHHH--cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 586 ---------AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 586 ---------~I~~ak~--~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
.+..+.. ..+|.|+|+||+|+.+ .+ ....+... ..++++||+++.|+++|.+.|..
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~--~e-~~~~l~~~----------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG--LE-ELERLARK----------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC--HH-HHHHHHhc----------cceEEEecccCCCHHHHHHHHHH
Confidence 1111111 2469999999999965 22 22222221 26899999999999999999976
Q ss_pred HHH
Q 001915 655 VAE 657 (996)
Q Consensus 655 lae 657 (996)
...
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 543
No 284
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.19 E-value=1.8e-10 Score=127.92 Aligned_cols=157 Identities=24% Similarity=0.206 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc-----c--chHHHHHHhhhc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----E--AFGAMRARGARV 565 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-----E--~F~~mr~rga~~ 565 (996)
-|.++|-||+||||||+.+...+..+..++.||.....-.+.+ .....+.+-|.||. + -......+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 4899999999999999999999988889999998877766665 23346999999992 2 234445677889
Q ss_pred CCeEEEEEecCCCCC---hhHHHH-HHHHH-----HcCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 566 TDIAVIVVAADDGIR---PQTNEA-IAHAK-----AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 566 ADiVILVVDAsdgv~---~Qt~E~-I~~ak-----~~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
|-+.++|||++..-. .+..+. ...+. ..+.|.+||+||+|++.. ..+.....+.... + ...+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~------~-~~~~ 310 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL------G-WEVF 310 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc------C-CCcc
Confidence 999999999985321 222222 22222 247899999999996432 2233333333321 1 1222
Q ss_pred EEeccCCCCChhhHHHHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVAELQ 659 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~lael~ 659 (996)
+++||.+++|+++|+..+..+.+..
T Consensus 311 ~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 311 YLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eeeehhcccCHHHHHHHHHHHHHHh
Confidence 3399999999999999988765544
No 285
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=3.7e-11 Score=122.59 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=114.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++++|+|..++||||++.++++.-+...+.. |+++++..-.+.+.+....+.+|||+|++.|......|++.|.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykk--tIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccccccc--ccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 3668999999999999999999998777655544 44443333333455667889999999999999999999999999
Q ss_pred EEEEEecCCCCChh-HHHHHHHHHH--cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQ-TNEAIAHAKA--AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Q-t~E~I~~ak~--~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
.+|||+.+|..... +.++.+.... ..+|.+++-||||+.+.. .+.+....... ...++-+|++..
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l---------~~RlyRtSvked 166 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL---------HKRLYRTSVKED 166 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh---------hhhhhhhhhhhh
Confidence 99999999854433 3344443332 479999999999995432 22222222222 145788999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.|+...|..|..
T Consensus 167 ~NV~~vF~YLae 178 (246)
T KOG4252|consen 167 FNVMHVFAYLAE 178 (246)
T ss_pred hhhHHHHHHHHH
Confidence 999999988763
No 286
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.17 E-value=8.2e-11 Score=110.00 Aligned_cols=72 Identities=58% Similarity=0.844 Sum_probs=67.6
Q ss_pred CcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee----------------------EeeccccccCCCeEEEe
Q 001915 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK----------------------IIGLNGVPIAGDEFEVV 726 (996)
Q Consensus 669 ~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk----------------------V~Gl~g~P~aGd~~~vv 726 (996)
+.|.|+|+..++++|++++++|++|+|++||+|++|..||+ ++||++.|.+||.|.++
T Consensus 1 a~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~ 80 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEe
Confidence 36899999999999999999999999999999999999998 68999999999999999
Q ss_pred ccHHHHHHHHHHHH
Q 001915 727 DSLDVAREKAEARA 740 (996)
Q Consensus 727 ~~e~~Ar~~a~~r~ 740 (996)
.+++.|+.+++.|.
T Consensus 81 ~~e~~a~~~~~~r~ 94 (95)
T cd03701 81 ASEKEAKEIGSYRL 94 (95)
T ss_pred CCCHHHHHhhHhhc
Confidence 99999999887763
No 287
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1.2e-10 Score=126.20 Aligned_cols=165 Identities=16% Similarity=0.235 Sum_probs=110.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRA 560 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~ 560 (996)
...|.+|.|||..|+|||||+|+|..........-+.+.++..+.... +++ ..++||||||.++ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~-~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS-YDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh-ccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 456677889999999999999999966554333334444443333322 233 4699999999544 666666
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHH--cCCCEEEEecccCCCC----CC------hhHHHHHHHhc-CCCCCC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDG----AN------PERVMQELSSI-GLMPED 627 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~--~~IPIIVVINKiDL~~----a~------~erv~~eL~~~-gl~~e~ 627 (996)
.++...|++++++++.|....-+.+.++.+.. .+.++|+++|.+|... |+ ...+.+.+... ......
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 77889999999999999776666666665543 3478999999999832 11 11122222110 000001
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+..--|++.+|+..+.|++.|..+++..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 1123589999999999999999998754
No 288
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.16 E-value=1.4e-10 Score=120.10 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee-CCccccEEEEeCCCccchHHHHHHh---hhc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARG---ARV 565 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F~~mr~rg---a~~ 565 (996)
+.+.|.|+|+.|+|||+|+.+|.......+.. .+ -....+.+ ......+.++|+|||+.+....... ...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t---S~---e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVT---SM---ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B------S---SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeec---cc---cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 45789999999999999999999774432110 11 01111111 2345689999999999987755544 788
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHH---------HcCCCEEEEecccCCCCCCh
Q 001915 566 TDIAVIVVAADDGIRPQTNEAIAHAK---------AAGVPIVIAINKIDKDGANP 611 (996)
Q Consensus 566 ADiVILVVDAsdgv~~Qt~E~I~~ak---------~~~IPIIVVINKiDL~~a~~ 611 (996)
+-++|||+|+.. ...+..+...++. ...+|++|++||.|+..+.+
T Consensus 76 ~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 76 AKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred CCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999999874 2222222222221 24678999999999976543
No 289
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.15 E-value=8.9e-11 Score=116.10 Aligned_cols=156 Identities=24% Similarity=0.235 Sum_probs=113.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..|..+|.++|-.++||||||..|....... -..|++++. ..+.+++ .+++++||..|+......|..|+...|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd 87 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVD 87 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhh---ccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccc
Confidence 3567899999999999999999998655421 112444433 4444444 478999999999999999999999999
Q ss_pred eEEEEEecCCCCC-----hhHHHHHHHHHHcCCCEEEEecccCCCC-CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~-----~Qt~E~I~~ak~~~IPIIVVINKiDL~~-a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|.+|.-. ....|.+...+...+|+.+..||.|+.. +..+++...+.-.++.... ..+-+|||++
T Consensus 88 ~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRs----whIq~csals 163 (185)
T KOG0074|consen 88 GLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRS----WHIQECSALS 163 (185)
T ss_pred eEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhce----EEeeeCcccc
Confidence 9999999887422 2223333344456789999999999843 3444444444444444444 3588999999
Q ss_pred CCChhhHHHHHH
Q 001915 642 GEKVDDLLETIM 653 (996)
Q Consensus 642 GeGIdEL~eaIl 653 (996)
++|+.+-.+|+.
T Consensus 164 ~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 164 LEGSTDGSDWVQ 175 (185)
T ss_pred ccCccCcchhhh
Confidence 999999998874
No 290
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.12 E-value=9.2e-10 Score=126.45 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=62.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEe-------------------eC-CccccEEEEeCCC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VD-GKLQPCVFLDTPG 551 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~-------------------id-gk~~~ItfIDTPG 551 (996)
++|+|+|.||+|||||+|+|.+........+++|++.....+.+. .+ .....++||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999888777777888876654333221 11 1225689999999
Q ss_pred c----cchHHHHH---HhhhcCCeEEEEEecC
Q 001915 552 H----EAFGAMRA---RGARVTDIAVIVVAAD 576 (996)
Q Consensus 552 h----E~F~~mr~---rga~~ADiVILVVDAs 576 (996)
. ..+..+.. ..++.+|++++|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 22333333 3479999999999996
No 291
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.09 E-value=4.4e-10 Score=102.25 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=62.3
Q ss_pred EeEEEE--EEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCC
Q 001915 886 GSAEVR--AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEG 963 (996)
Q Consensus 886 G~A~V~--~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~G 963 (996)
|...|+ ++|+.++ .|.| .|..|.|+.|+++ +|. ..|.|.||++.+++|+++++|+||+|+|++..++++|
T Consensus 5 ~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l----~G~--~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~~i~eG 76 (81)
T PF14578_consen 5 GKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL----DGR--KIGRIKSIEDNGKNVDEAKKGDEVAISIEGPTQIKEG 76 (81)
T ss_dssp EEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE----CSS--CEEEEEEEEETTEEESEEETT-EEEEEEET--TB-TT
T ss_pred eEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc----CCE--EEEEEEEeEECCcCccccCCCCEEEEEEeCCccCCCC
Confidence 344444 7888888 9999 9999999999997 887 5999999999999999999999999999999999999
Q ss_pred CEEEE
Q 001915 964 DIIEA 968 (996)
Q Consensus 964 D~ie~ 968 (996)
|+||.
T Consensus 77 DiLyV 81 (81)
T PF14578_consen 77 DILYV 81 (81)
T ss_dssp -EEEE
T ss_pred CEEeC
Confidence 99985
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.03 E-value=5.7e-10 Score=108.71 Aligned_cols=136 Identities=23% Similarity=0.287 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC----ccchHHHHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----hE~F~~mr~rga~~ADi 568 (996)
++++||.+++|||||.+.|.+...-. .-||.+ ++ ..+ -.+|||| |..+-.........+|+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQAv-----e~--~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQAV-----EF--NDK----GDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh----ccccee-----ec--cCc----cccCCchhhhhhhHHHHHHHHHhhccce
Confidence 68999999999999999998765432 235543 22 111 3589999 33333333445578999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC-CCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~-~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
+++|-.++++.+.-.- .++.-...|+|-+++|.|+. +++......+|.+.|- -++|.+|+.+..|+++
T Consensus 68 i~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa--------~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 68 IIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA--------EPIFETSAVDNQGVEE 136 (148)
T ss_pred eeeeecccCccccCCc---ccccccccceEEEEecccccchHhHHHHHHHHHHcCC--------cceEEEeccCcccHHH
Confidence 9999999985332211 22223456799999999997 6778888899988762 4799999999999999
Q ss_pred HHHHHHH
Q 001915 648 LLETIML 654 (996)
Q Consensus 648 L~eaIl~ 654 (996)
|++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998753
No 293
>PRK13768 GTPase; Provisional
Probab=99.03 E-value=7.4e-10 Score=119.93 Aligned_cols=113 Identities=25% Similarity=0.314 Sum_probs=74.5
Q ss_pred cEEEEeCCCccchHH---HHH---Hhhhc--CCeEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCCC
Q 001915 543 PCVFLDTPGHEAFGA---MRA---RGARV--TDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGA 609 (996)
Q Consensus 543 ~ItfIDTPGhE~F~~---mr~---rga~~--ADiVILVVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~a 609 (996)
.+.+|||||+..+.. ... +.+.. ++++++|+|+..+..+.+.+....+. ..++|+|+|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 689999999765432 221 22332 89999999998877777765554432 468999999999998643
Q ss_pred C-hhHHHHHHHh-------cCC--------------CCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 610 N-PERVMQELSS-------IGL--------------MPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 610 ~-~erv~~eL~~-------~gl--------------~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+ .+.....+.. ... .....+...+++++||++++|+++|+++|...
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 2 2222222221 000 00112334689999999999999999998643
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.6e-09 Score=113.84 Aligned_cols=157 Identities=19% Similarity=0.228 Sum_probs=98.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhh---cC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR---VT 566 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~---~A 566 (996)
.++.|.++|..|+|||+|+-.|+........ ..++.. ...+.+. .-.++++|.|||.+...-...++. .+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn----~a~~r~g--s~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPN----EATYRLG--SENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCee-eeeccc----eeeEeec--CcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 4468999999999999999998865332110 011111 1111111 224899999999998877777775 78
Q ss_pred CeEEEEEecCCCC---C---hhHHHHHHHH--HHcCCCEEEEecccCCCCCChhHH-HHHHHhc--------C-------
Q 001915 567 DIAVIVVAADDGI---R---PQTNEAIAHA--KAAGVPIVIAINKIDKDGANPERV-MQELSSI--------G------- 622 (996)
Q Consensus 567 DiVILVVDAsdgv---~---~Qt~E~I~~a--k~~~IPIIVVINKiDL~~a~~erv-~~eL~~~--------g------- 622 (996)
-++|+|||+..-. . +-....+... ....+|+++++||.|+..+...+. .++|+.. .
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999986421 1 1112222222 234678999999999976655443 3332210 0
Q ss_pred ---------------CCCCCCC-CCCcEEEeccCCCCChhhHHHHHHH
Q 001915 623 ---------------LMPEDWG-GDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 623 ---------------l~~e~~g-g~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
|.+.... ..+.|.++|+++| +|+++.+||..
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 0011111 4577999999999 89999999854
No 295
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.02 E-value=5.2e-10 Score=120.89 Aligned_cols=173 Identities=23% Similarity=0.371 Sum_probs=110.2
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc---------------------------------------ccccCCce
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------------AAEAGGIT 525 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va---------------------------------------~se~gGiT 525 (996)
.....+|+.|.++|..|+||||++.+|...-.. .+..+||+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 445678899999999999999999998522111 01223443
Q ss_pred eeeceEEEEEe-------eCCccccEEEEeCCCc-cchHHHH-----HHhh--hcCCeEEEEEecCCCCChhH-----HH
Q 001915 526 QGIGAYKVQVP-------VDGKLQPCVFLDTPGH-EAFGAMR-----ARGA--RVTDIAVIVVAADDGIRPQT-----NE 585 (996)
Q Consensus 526 qdI~a~~V~i~-------idgk~~~ItfIDTPGh-E~F~~mr-----~rga--~~ADiVILVVDAsdgv~~Qt-----~E 585 (996)
..++.+...+. -......+.++||||| |.|.... ...+ ...-++++|+|......+.+ ..
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 33322211110 0123356899999996 5564321 1112 34567889999876555444 44
Q ss_pred HHHHHHHcCCCEEEEecccCCCCCC--------hhHHHHHHHh------------cCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 586 AIAHAKAAGVPIVIAINKIDKDGAN--------PERVMQELSS------------IGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 586 ~I~~ak~~~IPIIVVINKiDL~~a~--------~erv~~eL~~------------~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
....+....+|+|++.||+|+.+.. .+.+.+.+.. ..+..++|...+..+.+||.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 4456667889999999999996543 2223333331 1233455667789999999999999
Q ss_pred hhHHHHHHHHHH
Q 001915 646 DDLLETIMLVAE 657 (996)
Q Consensus 646 dEL~eaIl~lae 657 (996)
+++|.++....+
T Consensus 253 ddf~~av~~~vd 264 (366)
T KOG1532|consen 253 DDFFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999875443
No 296
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.9e-10 Score=111.25 Aligned_cols=155 Identities=23% Similarity=0.198 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|.++|-.|+||||++-++.-.++... . .|.+....+++ .++.++++||..|+-.....|..|+..+|.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-k--Ptigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-K--PTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-C--CCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceE
Confidence 456899999999999999877754443221 1 23333333332 3677899999999999999999999999999
Q ss_pred EEEEecCCCC--ChhHHHHHHHHHH---cCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGI--RPQTNEAIAHAKA---AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv--~~Qt~E~I~~ak~---~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|||.+|.. ...-.+....+.+ .+..++|+.||+|....-. .++...|.-..+... ...+|..||.+|+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r----~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR----IWQIVKTSAVKGE 165 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh----eeEEEeecccccc
Confidence 9999998732 2223344333332 3456899999999865322 222222222222222 2579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+++.++||...
T Consensus 166 Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 166 GLDPAMDWLQRP 177 (182)
T ss_pred CCcHHHHHHHHH
Confidence 999999999753
No 297
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.7e-10 Score=113.79 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=110.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+++++|..+.||||++.+.+...+.-...+ |.++..+...+.-+.+.+++..|||+|+|.|...+..|+-...++|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~a--t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPA--TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccC--cceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46899999999999999999998777654443 4444444444333334588999999999999999999998899999
Q ss_pred EEEecCCCCC-----hhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 571 IVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 571 LVVDAsdgv~-----~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
+++|+...+. .+.++..+-+ .++||++++||.|...... .. ....+ ....++.++++||++..|.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~---k~--k~v~~---~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV---KA--KPVSF---HRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc---cc--cccee---eecccceeEEeeccccccc
Confidence 9999986443 3333333333 3699999999999843210 00 00011 1124678999999999999
Q ss_pred hhHHHHHHH
Q 001915 646 DDLLETIML 654 (996)
Q Consensus 646 dEL~eaIl~ 654 (996)
+.-|-++.+
T Consensus 158 ekPFl~Lar 166 (216)
T KOG0096|consen 158 ERPFLWLAR 166 (216)
T ss_pred ccchHHHhh
Confidence 999998863
No 298
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.6e-09 Score=108.44 Aligned_cols=160 Identities=21% Similarity=0.145 Sum_probs=111.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+-.++-+++++|-.|+|||||++.|...+....- .|.|.+.....+ .+.+++-+|..||..-...+..++..+
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQV 88 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhh
Confidence 5567889999999999999999999877765432 366665544443 356899999999999889999999999
Q ss_pred CeEEEEEecCCCCChh-HHHHHHHH----HHcCCCEEEEecccCCCCCChhHHHHH---HHh----cCC-CC-CCCCCCC
Q 001915 567 DIAVIVVAADDGIRPQ-TNEAIAHA----KAAGVPIVIAINKIDKDGANPERVMQE---LSS----IGL-MP-EDWGGDI 632 (996)
Q Consensus 567 DiVILVVDAsdgv~~Q-t~E~I~~a----k~~~IPIIVVINKiDL~~a~~erv~~e---L~~----~gl-~~-e~~gg~i 632 (996)
|.+++.||+-|.-..+ .++.+..+ ..+++|+++.+||+|.+.+..+.-... +.+ .+. .. ..-...+
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ 168 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPL 168 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 9999999998743222 22222222 236899999999999987653332221 111 110 11 1122345
Q ss_pred cEEEeccCCCCChhhHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl 653 (996)
.++.||...+.|.-+-|.|+.
T Consensus 169 evfmcsi~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 169 EVFMCSIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEEEEEEccCccceeeeehh
Confidence 688899888888777776654
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.95 E-value=7.7e-09 Score=116.40 Aligned_cols=162 Identities=23% Similarity=0.303 Sum_probs=93.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cccC-----C-----------ceeeeceEEEEEe-------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAG-----G-----------ITQGIGAYKVQVP------- 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~g-----G-----------iTqdI~a~~V~i~------- 536 (996)
..++.+|+|+|.+|+|||||+++|... ++.+ .+.. | ...+...+.....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 456789999999999999999987421 1110 0000 0 0111111222110
Q ss_pred -----------eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 537 -----------idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
.+..++.+.|+||+|.-.-. ......+|++++|++...+..-|.... ....+..|+|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhc
Confidence 11235789999999954211 113578999999976433322222111 012233489999999
Q ss_pred CCCCC-hhHHHHHHHh-cCCCC-CCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 606 KDGAN-PERVMQELSS-IGLMP-EDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 606 L~~a~-~erv~~eL~~-~gl~~-e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
+.... .++...++.. +.+.. ....+..|++.+||++|.||++|++.|....
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 86432 2333333332 22211 1112347899999999999999999997654
No 300
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.7e-09 Score=123.58 Aligned_cols=131 Identities=29% Similarity=0.411 Sum_probs=100.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-Ccc---------------ccccCCceeeeceEEEEEe------------eCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-KVA---------------AAEAGGITQGIGAYKVQVP------------VDGK 540 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s-~va---------------~se~gGiTqdI~a~~V~i~------------idgk 540 (996)
..-.++.++.|+|||||||.+.|... ... .....+||+.-++....+. -++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34467899999999999999998632 111 1223467765554443322 2355
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC----CCChhHHHH
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----GANPERVMQ 616 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~----~a~~erv~~ 616 (996)
++-+++||.|||.+|++.....++.+|++++|+|+-+|+--||...++++....+.-++++||+|.. ....+++.+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHH
Confidence 6789999999999999999999999999999999999999999999999988888889999999962 234444444
Q ss_pred HHH
Q 001915 617 ELS 619 (996)
Q Consensus 617 eL~ 619 (996)
.++
T Consensus 177 tf~ 179 (842)
T KOG0469|consen 177 TFQ 179 (842)
T ss_pred HHH
Confidence 443
No 301
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-08 Score=102.21 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=107.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-ccCCceeeeceEEEEEeeCCccccEEEEeCCCccch-HHHHHHhhhc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-GAMRARGARV 565 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~s-e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-~~mr~rga~~ 565 (996)
..+..+|+++|.-++|||++|..|...+...+ +...+-.|+-...++.. .+..-.+.|.||+|...+ ..+-..|+..
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~-rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETD-RGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecC-CChhheEEEeecccccCchhhhhHhHhcc
Confidence 34678999999999999999999986655433 33333334322233322 234457999999997777 4455566799
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 566 TDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 566 ADiVILVVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+++|||+..+..+.|..+.+..-- ...+|++|.+||+|+.+ +.++....+.+-... ..+..++++|.
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~--p~~vd~d~A~~Wa~r----Ekvkl~eVta~ 158 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE--PREVDMDVAQIWAKR----EKVKLWEVTAM 158 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc--chhcCHHHHHHHHhh----hheeEEEEEec
Confidence 99999999999977777766664332 24589999999999942 222211111110001 13678999999
Q ss_pred CCCChhhHHHHHH
Q 001915 641 KGEKVDDLLETIM 653 (996)
Q Consensus 641 tGeGIdEL~eaIl 653 (996)
....+-+.|-.+.
T Consensus 159 dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 159 DRPSLYEPFTYLA 171 (198)
T ss_pred cchhhhhHHHHHH
Confidence 9998888887765
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.90 E-value=1.8e-08 Score=111.55 Aligned_cols=161 Identities=22% Similarity=0.302 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cc--cC--------------CceeeeceEEEEEee------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AE--AG--------------GITQGIGAYKVQVPV------ 537 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se--~g--------------GiTqdI~a~~V~i~i------ 537 (996)
..++..|+|+|.+|+|||||+..|... ++.. .+ .+ ....+.+.+......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 456789999999999999999997531 1110 00 00 000111111111111
Q ss_pred ------------CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 538 ------------DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 538 ------------dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
+..++.+.|+||+|.-.-. ...+..+|.++++.+...+ .....+.. ...++|.++++||+|
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~~ivv~NK~D 183 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIADIYVVNKAD 183 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhccEEEEEccc
Confidence 1235789999999953211 2245778998888643321 22222221 124788999999999
Q ss_pred CCCCChhHH-HHHHH-h-cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 606 KDGANPERV-MQELS-S-IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 606 L~~a~~erv-~~eL~-~-~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+........ ...+. . ..+.....+...+++++||++|.|+++|+++|...
T Consensus 184 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 975432211 11111 0 11111111123579999999999999999999765
No 303
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.89 E-value=3.8e-09 Score=123.43 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=105.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc---ccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhh
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA---EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA 563 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~s---e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga 563 (996)
...+..+|+++|+.|+|||||+-+|....+... ..+-+| ++..+.......+++||+-.+.-.......+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-------IPadvtPe~vpt~ivD~ss~~~~~~~l~~Ei 77 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-------IPADVTPENVPTSIVDTSSDSDDRLCLRKEI 77 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-------cCCccCcCcCceEEEecccccchhHHHHHHH
Confidence 345678999999999999999999998776532 122222 2222233456689999987666555567788
Q ss_pred hcCCeEEEEEecCC-----CCChhHHHHHHHHHH--cCCCEEEEecccCCCCCChh-------HHHHHHHhcCCCCCCCC
Q 001915 564 RVTDIAVIVVAADD-----GIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGANPE-------RVMQELSSIGLMPEDWG 629 (996)
Q Consensus 564 ~~ADiVILVVDAsd-----gv~~Qt~E~I~~ak~--~~IPIIVVINKiDL~~a~~e-------rv~~eL~~~gl~~e~~g 629 (996)
+.||++++|+++++ +++..|..+++.... .++|+|+|+||+|....... .++.++.+.
T Consensus 78 rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei-------- 149 (625)
T KOG1707|consen 78 RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI-------- 149 (625)
T ss_pred hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH--------
Confidence 99999999999886 455566666655542 46899999999998543322 222333222
Q ss_pred CCCcEEEeccCCCCChhhHHHHH
Q 001915 630 GDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 630 g~ipvVeISAktGeGIdEL~eaI 652 (996)
-.+|+|||++-.++.++|...
T Consensus 150 --EtciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 150 --ETCIECSALTLANVSELFYYA 170 (625)
T ss_pred --HHHHhhhhhhhhhhHhhhhhh
Confidence 248999999999999998753
No 304
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=6.3e-09 Score=113.04 Aligned_cols=159 Identities=24% Similarity=0.310 Sum_probs=115.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccch
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAF 555 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va---~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F 555 (996)
.++|.+++.|..|+|||||||.+...... .....|-||.|..|.+. ..+.++|.|| -+.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------KSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------ceEEEEecCCcccccCCccCcchH
Confidence 57799999999999999999999865443 23367889988777653 3689999999 2446
Q ss_pred HHHHHHhh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh---hH-HHHHHH-hcCCCCCC
Q 001915 556 GAMRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ER-VMQELS-SIGLMPED 627 (996)
Q Consensus 556 ~~mr~rga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~---er-v~~eL~-~~gl~~e~ 627 (996)
..+...|+ ..-=.++|.+|++-++.+-+...+..+.+.++|+.+|.||||+...-. .+ ..+... -.++...-
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 66666665 233457788999999999999999999999999999999999832111 00 000000 11222223
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
+....|++.+|+.++.|+++|+-.|..
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 334578889999999999999876653
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=98.87 E-value=1.5e-08 Score=116.23 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc--------------cccEEEEeCCCcc-
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHE- 553 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk--------------~~~ItfIDTPGhE- 553 (996)
.+..+|+|+|.||+|||||+|+|.+........+++|++.....+.+. +.. ..++.|+||||-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~-d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP-DERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc-cchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 466789999999999999999999888888888999987766555432 111 2359999999931
Q ss_pred ------chHHHHHHhhhcCCeEEEEEecC
Q 001915 554 ------AFGAMRARGARVTDIAVIVVAAD 576 (996)
Q Consensus 554 ------~F~~mr~rga~~ADiVILVVDAs 576 (996)
.+.......++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 12333344568899999999984
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.86 E-value=3.2e-08 Score=113.12 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=101.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC----Ccc------------ccccCC---ceeeece---EEEEEee-CCccccE
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT----KVA------------AAEAGG---ITQGIGA---YKVQVPV-DGKLQPC 544 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s----~va------------~se~gG---iTqdI~a---~~V~i~i-dgk~~~I 544 (996)
..--..|+|+|++++|||||+++|... +.. .+...| +|.+.-+ ..+++.. ++-..++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 334568999999999999999999876 332 345567 6666554 3344432 3445689
Q ss_pred EEEeCCCcc--------c-----------------hHHH----HHHhhh-cCCeEEEEE-ecC------CCCChhHHHHH
Q 001915 545 VFLDTPGHE--------A-----------------FGAM----RARGAR-VTDIAVIVV-AAD------DGIRPQTNEAI 587 (996)
Q Consensus 545 tfIDTPGhE--------~-----------------F~~m----r~rga~-~ADiVILVV-DAs------dgv~~Qt~E~I 587 (996)
.|+||+|.. + |... ...-+. .+|+.|+|. |.+ ++......+.+
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999921 1 1111 122234 899999999 775 45566677888
Q ss_pred HHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC--CCChhhHHHHH
Q 001915 588 AHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETI 652 (996)
Q Consensus 588 ~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt--GeGIdEL~eaI 652 (996)
..++..++|+|+++||+|-.......+...+... + +++++++|+.+ ...|..+|+.+
T Consensus 174 ~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~ek------y--~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 174 EELKELNKPFIILLNSTHPYHPETEALRQELEEK------Y--DVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHH------h--CCceEEEEHHHcCHHHHHHHHHHH
Confidence 9999999999999999994222233333344321 1 25677777643 34455555544
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.86 E-value=9.9e-10 Score=118.21 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred cEEEEeCCCccchHHHHHHhh--------hcCCeEEEEEecCCCCChhHHHHH-----HHHHHcCCCEEEEecccCCCCC
Q 001915 543 PCVFLDTPGHEAFGAMRARGA--------RVTDIAVIVVAADDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDGA 609 (996)
Q Consensus 543 ~ItfIDTPGhE~F~~mr~rga--------~~ADiVILVVDAsdgv~~Qt~E~I-----~~ak~~~IPIIVVINKiDL~~a 609 (996)
.+.++|||||.++-..+.... ...=++++++|+..-..+...-.. ......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988776666544 445678899998764444332211 2223368999999999999652
Q ss_pred ChhHHHHH-----------------H-HhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 610 NPERVMQE-----------------L-SSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 610 ~~erv~~e-----------------L-~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+..... + .......++++.-..++++|+.+++|+++|+..|-..
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 21111111 1 1111223444444489999999999999999988654
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.85 E-value=1.6e-08 Score=100.54 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=72.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEE---------------------------------------
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQ--------------------------------------- 534 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~--------------------------------------- 534 (996)
|+|+|..++|||||+|+|.+..+.......+|..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999998765433222222211110000
Q ss_pred -------------EeeCCccccEEEEeCCCc----cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCC
Q 001915 535 -------------VPVDGKLQPCVFLDTPGH----EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVP 596 (996)
Q Consensus 535 -------------i~idgk~~~ItfIDTPGh----E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IP 596 (996)
.........+.|+||||. .....+...++..+|++|+|+++.........+.+..... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 000112246899999994 2233667788899999999999999877776666655544 3445
Q ss_pred EEEEeccc
Q 001915 597 IVIAINKI 604 (996)
Q Consensus 597 IIVVINKi 604 (996)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999995
No 309
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=9.1e-09 Score=118.48 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=103.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc------cchHHHHHH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EAFGAMRAR 561 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh------E~F~~mr~r 561 (996)
....+.++++|-||+|||||++.+....+.+..++.+|..+-..++ +.+-..++++||||. +....++..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~----dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL----DYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh----hhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 3456789999999999999999999999999899888877644443 334457999999992 112222222
Q ss_pred ---hhhcCCeEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCC-CChhH----HHHHHHhcCCCCCCC
Q 001915 562 ---GARVTDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDG-ANPER----VMQELSSIGLMPEDW 628 (996)
Q Consensus 562 ---ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~-a~~er----v~~eL~~~gl~~e~~ 628 (996)
-++.-.+|+|+.|.++.+.....+.+.+.+ -.+.|+|+|+||||+.. .+.++ +.+.+...
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~------- 313 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD------- 313 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-------
Confidence 225556799999998744332222222222 15889999999999843 23222 33333332
Q ss_pred CCCCcEEEeccCCCCChhhHHHHH
Q 001915 629 GGDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaI 652 (996)
+.++++.+|+.+.+|+.++....
T Consensus 314 -~~v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 314 -GNVKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred -cCceEEEecccchhceeeHHHHH
Confidence 24789999999999998865543
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.84 E-value=1.3e-08 Score=106.51 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC-C----cc--ccccCCceee------eceEEEEEee------------------C
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT-K----VA--AAEAGGITQG------IGAYKVQVPV------------------D 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s-~----va--~se~gGiTqd------I~a~~V~i~i------------------d 538 (996)
.+++|+|+|+.|+|||||++++... . +. ..+.. .+.| .+...+...- .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~-~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVI-TKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCC-CcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 5789999999999999999998743 1 11 11110 0000 0000111100 0
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC---hhHHH
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVM 615 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~ 615 (996)
.....+.|++|.|.-... ..+....+..+.|+|+.++...+. ......+.|.++++||+|+.+.. ..++.
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~ 172 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEKMK 172 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHHHH
Confidence 013467888888821110 111234566677888876543222 22233467889999999996532 23344
Q ss_pred HHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 616 ~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
..+.... ...+++++||++|.|+++++++|..
T Consensus 173 ~~l~~~~-------~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 173 ADAKKIN-------PEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred HHHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4444321 2468999999999999999999864
No 311
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.84 E-value=4.2e-08 Score=106.44 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH-----H--
Q 001915 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-----A-- 557 (996)
Q Consensus 486 ~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~-----~-- 557 (996)
+....+.+|+++|.+|+|||||+|+|.+.... .+...+.|.....+... + .+..++||||||..... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~--~--~g~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT--V--DGFKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE--E--CCeEEEEEECCCcCcchhhHHHHHH
Confidence 34557789999999999999999999987654 33444566665444332 2 34679999999954331 1
Q ss_pred ---HHHHhh--hcCCeEEEEEecCC-CCChhHHHHHHHHHH-cC----CCEEEEecccCCC
Q 001915 558 ---MRARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (996)
Q Consensus 558 ---mr~rga--~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~-~~----IPIIVVINKiDL~ 607 (996)
...+++ ...|++++|..++. .....+...++.+.. .+ .++|+|+||+|..
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112233 25688888876654 344555556655543 23 4699999999983
No 312
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.83 E-value=9.8e-09 Score=116.87 Aligned_cols=156 Identities=18% Similarity=0.285 Sum_probs=88.0
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-----ccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc--chH-
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE--AFG- 556 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-----~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE--~F~- 556 (996)
..+..-+.+|+|+|.+|+|||||+|+|++-.-. ......+|.....|.. .+..+++|||.||.. .|.
T Consensus 29 ~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----p~~pnv~lWDlPG~gt~~f~~ 103 (376)
T PF05049_consen 29 KDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----PKFPNVTLWDLPGIGTPNFPP 103 (376)
T ss_dssp HHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------SS-TTEEEEEE--GGGSS--H
T ss_pred HHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----CCCCCCeEEeCCCCCCCCCCH
Confidence 344556789999999999999999999853221 1111124555433332 223469999999942 222
Q ss_pred --HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC----------CCChhHHHHH-------
Q 001915 557 --AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----------GANPERVMQE------- 617 (996)
Q Consensus 557 --~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~----------~a~~erv~~e------- 617 (996)
.+-...+...|.+|++.+ ..+...+....+.++..+.|+.+|-+|+|.. ..+.+++.++
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 223345678898888765 5567778888889999999999999999961 1233333333
Q ss_pred -HHhcCCCCCCCCCCCcEEEeccCCCC--ChhhHHHHHH
Q 001915 618 -LSSIGLMPEDWGGDIPMVQISALKGE--KVDDLLETIM 653 (996)
Q Consensus 618 -L~~~gl~~e~~gg~ipvVeISAktGe--GIdEL~eaIl 653 (996)
|...++ ...++|.+|...-. ....|.++|.
T Consensus 182 ~L~k~gv------~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 182 NLQKAGV------SEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp HHHCTT-------SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred HHHHcCC------CcCceEEEeCCCcccCChHHHHHHHH
Confidence 332332 24679999998654 4566777765
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=8.2e-08 Score=103.78 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeece---------EE--E-------------------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGA---------YK--V------------------------- 533 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a---------~~--V------------------------- 533 (996)
..|.|+++|+.++|||||+++|.+..+.....+.+|+.... |. +
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 55789999999999999999998764322222222211100 00 0
Q ss_pred -----------EEee-CCccccEEEEeCCCccc-------------hHHHHHHhhh-cCCeEEEEEecCCCCChhH-HHH
Q 001915 534 -----------QVPV-DGKLQPCVFLDTPGHEA-------------FGAMRARGAR-VTDIAVIVVAADDGIRPQT-NEA 586 (996)
Q Consensus 534 -----------~i~i-dgk~~~ItfIDTPGhE~-------------F~~mr~rga~-~ADiVILVVDAsdgv~~Qt-~E~ 586 (996)
.+.+ ......++|+||||... ...+...|+. ..+++++|+|+..++..+. .+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0000 01125799999999531 2234556666 5579999999998888877 688
Q ss_pred HHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh
Q 001915 587 IAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (996)
Q Consensus 587 I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~ 620 (996)
++.+...+.++|+|+||+|......+ +...+..
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~~~-~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEGTD-ARDILEN 217 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCccHH-HHHHHhC
Confidence 88888889999999999998654433 4444444
No 314
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.81 E-value=5.2e-08 Score=104.82 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=88.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH-----HHHhhhcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-----RARGARVT 566 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m-----r~rga~~A 566 (996)
+|.+||..++||||+...+.+...+ .+..-+.|.++....+.. .....+++||+||+..|... +..-++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---CCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 6899999999999999988765432 333345677765544432 24468999999999776554 45567999
Q ss_pred CeEEEEEecCCCCChhH----HHHHHHHHH--cCCCEEEEecccCCCCCCh---------hHHHHHHHhcCCCCCCCCCC
Q 001915 567 DIAVIVVAADDGIRPQT----NEAIAHAKA--AGVPIVIAINKIDKDGANP---------ERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt----~E~I~~ak~--~~IPIIVVINKiDL~~a~~---------erv~~eL~~~gl~~e~~gg~ 631 (996)
+++|+|+|+...-.... ...+..+.. .++.+.|.++|+|+...+. +++...+...+.. .
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~------~ 151 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE------D 151 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T------S
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc------c
Confidence 99999999983322222 222333333 3566999999999854322 1222233333221 4
Q ss_pred CcEEEeccCCCCChhhHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl 653 (996)
+.++.+|... +.|-+.+..|+
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Iv 172 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIV 172 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHH
T ss_pred eEEEeccCcC-cHHHHHHHHHH
Confidence 7799999887 45555555544
No 315
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=4.7e-08 Score=102.53 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=64.2
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC--EEEEecccCCCC---CChhHHHH
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP--IVIAINKIDKDG---ANPERVMQ 616 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP--IIVVINKiDL~~---a~~erv~~ 616 (996)
..+.|++|.|..- ..... ...+|.+|+|+|+.++...+.. . ..++. -++++||+|+.. .+.+.+.+
T Consensus 92 ~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~----~--~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 92 LEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK----G--GPGITRSDLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred CCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh----h--HhHhhhccEEEEEhhhccccccccHHHHHH
Confidence 4678999999211 00001 1236889999999875542211 0 11333 389999999964 34455555
Q ss_pred HHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 617 eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
++.... ...+++++||++|+|+++++++|..
T Consensus 163 ~~~~~~-------~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 163 DAKKMR-------GEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred HHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 555542 2478999999999999999999874
No 316
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.75 E-value=9.1e-08 Score=108.86 Aligned_cols=85 Identities=26% Similarity=0.184 Sum_probs=62.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCC-------------ccccEEEEeCCCcc-----
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-------------KLQPCVFLDTPGHE----- 553 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idg-------------k~~~ItfIDTPGhE----- 553 (996)
++|+|+|.||+|||||+|+|.+........+++|++.....+.+.... ....+.|+||||..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988777788899987765444432110 01259999999931
Q ss_pred --chHHHHHHhhhcCCeEEEEEecC
Q 001915 554 --AFGAMRARGARVTDIAVIVVAAD 576 (996)
Q Consensus 554 --~F~~mr~rga~~ADiVILVVDAs 576 (996)
.+.......++.+|++++|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12223344568999999999985
No 317
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.73 E-value=1.9e-08 Score=101.26 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=117.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|.++|++..|||||+-.+.+.... +....|.++++....+.+.+....+.+||..|+++|..|.......+-+++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~d--e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYD--EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhH--HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 357999999999999999998877664 222345566666677777888889999999999999999999999999999
Q ss_pred EEEecCCCCChh-HHHHHHHHHHcCCC--EEEEecccCCC-CCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQ-TNEAIAHAKAAGVP--IVIAINKIDKD-GANP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Q-t~E~I~~ak~~~IP--IIVVINKiDL~-~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+++|.+...... ..++.++++..+.. -|++++|.|+. ...+ +.+..+...+... -+.+.|+||+-...
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~-----mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKV-----MNASLFFCSTSHSI 172 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH-----hCCcEEEeeccccc
Confidence 999998754333 35566677665532 47889999972 2222 2222232222111 14689999999999
Q ss_pred ChhhHHHHHHHHHHHHhh
Q 001915 644 KVDDLLETIMLVAELQEL 661 (996)
Q Consensus 644 GIdEL~eaIl~lael~el 661 (996)
||+.+|..++ +.+-++
T Consensus 173 Nv~KIFK~vl--AklFnL 188 (205)
T KOG1673|consen 173 NVQKIFKIVL--AKLFNL 188 (205)
T ss_pred cHHHHHHHHH--HHHhCC
Confidence 9999998764 444444
No 318
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=98.73 E-value=4.4e-08 Score=94.07 Aligned_cols=68 Identities=37% Similarity=0.506 Sum_probs=61.3
Q ss_pred cceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccce----e--------------------------------Ee--
Q 001915 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFG----K--------------------------------II-- 711 (996)
Q Consensus 670 ~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~g----k--------------------------------V~-- 711 (996)
.|+|+|++.++|+|+++++++++|+|+.||+|++|..+| + |.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 689999999999999999999999999999999999997 3 22
Q ss_pred eccccccCCCeEEEeccHHHHHHHHHH
Q 001915 712 GLNGVPIAGDEFEVVDSLDVAREKAEA 738 (996)
Q Consensus 712 Gl~g~P~aGd~~~vv~~e~~Ar~~a~~ 738 (996)
||+++ .||+.|+++.++++|+++++.
T Consensus 82 gL~~v-~aG~~~~vv~~e~~a~~~~~~ 107 (110)
T cd03703 82 DLEKA-IAGSPLLVVGPEDEIEELKEE 107 (110)
T ss_pred CCccc-cCCCEEEEECCHHHHHHHHHH
Confidence 57887 999999999999999987754
No 319
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.72 E-value=2.1e-09 Score=110.67 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++.|+|.-++|||+++.++....+...+.. |+++.+...-..++ ...+++.+||.+|++.|+.|...|++.+.++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRA--tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA--TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHH--HHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4689999999999999999988777654443 33332222112222 33467899999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHH-HHHH-------HcCCCEEEEecccCCCCCCh----hHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 571 IVVAADDGIRPQTNEAI-AHAK-------AAGVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 571 LVVDAsdgv~~Qt~E~I-~~ak-------~~~IPIIVVINKiDL~~a~~----erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
+|||.+......-...+ +.+. ..-+|+++..||||...... ..+.+...++++ ...+++|
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf--------~gwtets 175 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF--------EGWTETS 175 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc--------cceeeec
Confidence 99999975543322222 2111 12356899999999854322 223333333443 4689999
Q ss_pred cCCCCChhhHHHHHHHH
Q 001915 639 ALKGEKVDDLLETIMLV 655 (996)
Q Consensus 639 AktGeGIdEL~eaIl~l 655 (996)
||.+.||+|..+.++..
T Consensus 176 ~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEK 192 (229)
T ss_pred cccccChhHHHHHHHHH
Confidence 99999999998888754
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=5.8e-08 Score=105.47 Aligned_cols=155 Identities=26% Similarity=0.440 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc------ccc-CC-----------ceeeeceEEEEEeeC-----
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA------AEA-GG-----------ITQGIGAYKVQVPVD----- 538 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~va~------se~-gG-----------iTqdI~a~~V~i~id----- 538 (996)
..+.++|+|.|.||+|||||+++|... ++.+ +.. +| ...|.+.|--.+...
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 346789999999999999999998522 2211 000 00 123344444433222
Q ss_pred -------------CccccEEEEeCCC--ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHH--HHHHHHHcCCCEEEEe
Q 001915 539 -------------GKLQPCVFLDTPG--HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNE--AIAHAKAAGVPIVIAI 601 (996)
Q Consensus 539 -------------gk~~~ItfIDTPG--hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E--~I~~ak~~~IPIIVVI 601 (996)
..++.+.|+.|-| |.+. .-...+|.+++|+-..-|-.-|... ++. +.-|+|+
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vV 174 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEE
Confidence 1356799999988 3322 2357899999999887665555432 222 2449999
Q ss_pred cccCCCCCChhHHHHHHH----hcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 602 NKIDKDGANPERVMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 602 NKiDL~~a~~erv~~eL~----~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
||+|++.+ ++...++. -..-....| ..|++.+||.+|.||++|+++|....+
T Consensus 175 NKaD~~gA--~~~~~~l~~~l~l~~~~~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 175 NKADRPGA--DRTVRDLRSMLHLLREREDGW--RPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp E--SHHHH--HHHHHHHHHHHHHCSTSCTSB----EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eCCChHHH--HHHHHHHHHHHhhccccccCC--CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99997543 22222222 111112233 479999999999999999999976544
No 321
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.68 E-value=5.9e-08 Score=107.31 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC---------ccchHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG---------HEAFGAMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG---------hE~F~~mr 559 (996)
...|+|+++|-.|+|||||+++|........+.-..|-|.+.....++ .+..+.|.||-| .++|.+..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp---sg~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP---SGNFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC---CCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 346899999999999999999999766655555556777766666654 234689999999 24454432
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHH-HHHHHHHcCCC-------EEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCC
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNE-AIAHAKAAGVP-------IVIAINKIDKDGANPERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~~~IP-------IIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ 631 (996)
.....+|+++.|+|++++.-++-++ .+.-++..++| +|=|-||+|..... ..++ .
T Consensus 253 -eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~E---~ 315 (410)
T KOG0410|consen 253 -EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEEE---K 315 (410)
T ss_pred -HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Cccc---c
Confidence 2346789999999999976555444 44556666765 57788899874311 1111 1
Q ss_pred CcEEEeccCCCCChhhHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl 653 (996)
...+++||++|+|++++++++-
T Consensus 316 n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred CCccccccccCccHHHHHHHHH
Confidence 2268899999999999998875
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.65 E-value=2.2e-07 Score=102.39 Aligned_cols=166 Identities=24% Similarity=0.318 Sum_probs=100.9
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHc------CCccc---c---c-cC-----------CceeeeceEEEEEee----
Q 001915 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRK------TKVAA---A---E-AG-----------GITQGIGAYKVQVPV---- 537 (996)
Q Consensus 486 ~l~~RppkVaIVGh~dvGKTSLLnrL~~------s~va~---s---e-~g-----------GiTqdI~a~~V~i~i---- 537 (996)
....++.+|+|.|.||+|||||++.|.. .++.+ . . .+ .++.+.++|.-....
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 3456888999999999999999999852 12221 0 0 01 123344444433321
Q ss_pred --------------CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecc
Q 001915 538 --------------DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK 603 (996)
Q Consensus 538 --------------dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINK 603 (996)
+.-++.+.|+.|-|.-.-. ..-...+|.+++|.-..-|-.-|.... --..+--|+|+||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINK 198 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINK 198 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEec
Confidence 2245778999998832111 223467899999886655554444321 1123445999999
Q ss_pred cCCCCCCh--hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHH
Q 001915 604 IDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAEL 658 (996)
Q Consensus 604 iDL~~a~~--erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael 658 (996)
.|+.+++. ..+...+..........++..+++.+||.+|+||++|+++|....+.
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 99755422 11222222221123333567899999999999999999999765443
No 323
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.58 E-value=7.4e-07 Score=99.56 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc-cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHH-------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA------- 560 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~-se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~------- 560 (996)
...++|++||.+|+|||||+|+|++..+.. +...+.|..... ..... .+..+++|||||......+..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~--~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMM--VSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE--EEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 456899999999999999999999877542 222222322211 12222 356899999999654322111
Q ss_pred Hhh--hcCCeEEEEEecCC-CCChhHHHHHHHHHHc-----CCCEEEEecccCCC
Q 001915 561 RGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-----GVPIVIAINKIDKD 607 (996)
Q Consensus 561 rga--~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~-----~IPIIVVINKiDL~ 607 (996)
.++ ...|++|||...+. .....+...++.+... -.++||+++++|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 111 25899999966553 3443444444444331 24699999999964
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.57 E-value=1.5e-07 Score=98.27 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=86.7
Q ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeece---------------EEEEEe----------------
Q 001915 489 DRP-PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGA---------------YKVQVP---------------- 536 (996)
Q Consensus 489 ~Rp-pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a---------------~~V~i~---------------- 536 (996)
.++ ..|.|+|++|+|||+|+.+++..-...-...-+|-|+-. ..+..-
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 455 789999999999999999876322111111112222100 001000
Q ss_pred --eCCccccEEEEeCCCccchHHHHHHhhhcCC-eEEEEEecCCCCChhHH--HHHHHHHHcCCCEEEEecccCCC---C
Q 001915 537 --VDGKLQPCVFLDTPGHEAFGAMRARGARVTD-IAVIVVAADDGIRPQTN--EAIAHAKAAGVPIVIAINKIDKD---G 608 (996)
Q Consensus 537 --idgk~~~ItfIDTPGhE~F~~mr~rga~~AD-iVILVVDAsdgv~~Qt~--E~I~~ak~~~IPIIVVINKiDL~---~ 608 (996)
.+.....+.|+.+.|.-. ........| .-|+|+|+..|..-..+ ..+. ..=++|+||.|+. +
T Consensus 90 l~~~~~~~Dll~iEs~GNL~----~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~------~aDllVInK~DLa~~v~ 159 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNLV----CPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF------KADLLVINKTDLAPYVG 159 (202)
T ss_pred HhhcCCcCCEEEEecCccee----cccCcchhhceEEEEEECCCCCCCcccCCCcee------EeeEEEEehHHhHHHhC
Confidence 000113466666666110 011123345 88999999886533221 0000 1248999999993 4
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 609 ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 609 a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
++.+.+....... .++.++|++|+++|+|+++++++|...
T Consensus 160 ~dlevm~~da~~~-------np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 160 ADLEVMARDAKEV-------NPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ccHHHHHHHHHHh-------CCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 5556655555543 246899999999999999999998643
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.57 E-value=1.5e-07 Score=104.13 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-----cc--ccccCCce-------eeeceEEEEE----------------eeC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-----VA--AAEAGGIT-------QGIGAYKVQV----------------PVD 538 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~-----va--~se~gGiT-------qdI~a~~V~i----------------~id 538 (996)
.....|.|+|.+|+|||||+++++..- +. ..+..... .++...++.. .++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 456789999999999999998876431 11 11111000 0011111110 001
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC---ChhHHH
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVM 615 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~ 615 (996)
.....+.|+++-|.-...... .+ ..+.-+.++++.++... .+++-.....+-++++||+|+... +.+.+.
T Consensus 182 ~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~ 254 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCI 254 (290)
T ss_pred hcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCcccHHHHHHHH
Confidence 122345666666631110000 01 01233456666655321 111222234667999999999642 233444
Q ss_pred HHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 616 ~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+.... ...+++++||++|+|+++|++||..+
T Consensus 255 ~~lr~ln-------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 255 ACAREVN-------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHhhC-------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4444432 24789999999999999999999753
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=3.7e-07 Score=90.73 Aligned_cols=93 Identities=25% Similarity=0.215 Sum_probs=67.0
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
..+..+....+|++|+|+|+.++...+..+....+...+.|+|+|+||+|+... .... .+.... .. ...+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~-~~~~~~---~~--~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLE-KWKSIK---ES--EGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHH-HHHHHH---Hh--CCCcEE
Confidence 456666778899999999999877767666666666678999999999998532 1111 111110 01 125799
Q ss_pred EeccCCCCChhhHHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~la 656 (996)
++||++|.|+++|++.|....
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEEccccccHHHHHHHHHHHH
Confidence 999999999999999987553
No 327
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.4e-06 Score=98.68 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC---------C-----ccccEEEEeCCC-----
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD---------G-----KLQPCVFLDTPG----- 551 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id---------g-----k~~~ItfIDTPG----- 551 (996)
.++++|+|.||+|||||+|+|+........++.+|++.+...+.++.. . ....+.|+|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 367999999999999999999998877788899998887665554310 0 123588999999
Q ss_pred --ccchHHHHHHhhhcCCeEEEEEecCC
Q 001915 552 --HEAFGAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 552 --hE~F~~mr~rga~~ADiVILVVDAsd 577 (996)
-+-........++.+|+++.|||+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 24566666777899999999999984
No 328
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.1e-06 Score=99.81 Aligned_cols=138 Identities=20% Similarity=0.341 Sum_probs=95.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--CccccccCC-ceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s--~va~se~gG-iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ 565 (996)
+.|++|+|||+||+|||||+..|... +....+..| || + +.++..+++|+.+|. ++.. +..-+..
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT---------v-vsgK~RRiTflEcp~--Dl~~-miDvaKI 133 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT---------V-VSGKTRRITFLECPS--DLHQ-MIDVAKI 133 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE---------E-eecceeEEEEEeChH--HHHH-HHhHHHh
Confidence 45678889999999999999988632 222333322 22 1 246778999999993 3333 4556789
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 566 ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|++|++-|+...|.+.++.+...+.| ++-|++..|+.... ...++..|.. .+ ..+....+.+|.+|...
T Consensus 134 aDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh-Rf-WtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH-RF-WTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred hheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhh-hH-HHHHcCCceEEEecccc
Confidence 9999999999999999999999999999999 77889999995321 1122222222 11 11122346788888654
No 329
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.45 E-value=2.8e-06 Score=89.64 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccc--cCCceeeeceEEEEEeeCCccccEEEEeCCCc-------cchHHHHHH--
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFGAMRAR-- 561 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se--~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-------E~F~~mr~r-- 561 (996)
+|+++|..|+||||++|.|++....... ....|+....+.. .++ +..++++||||. +.......+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~--~~~--g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG--EVD--GRQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE--EET--TEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee--eec--ceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 6999999999999999999987764332 2345655544443 233 467999999992 112222222
Q ss_pred --hhhcCCeEEEEEecCCCCChhHHHHHHHHHH-cC----CCEEEEecccCCCC
Q 001915 562 --GARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AG----VPIVIAINKIDKDG 608 (996)
Q Consensus 562 --ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~----IPIIVVINKiDL~~ 608 (996)
.....|++|||+.+. .+.......+..+.. .+ ..+||+.+.+|...
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 235679999999998 677667766666553 22 24889999888643
No 330
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.40 E-value=6.8e-07 Score=98.48 Aligned_cols=84 Identities=26% Similarity=0.243 Sum_probs=61.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCC-------------ccccEEEEeCCCc-------c
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-------------KLQPCVFLDTPGH-------E 553 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idg-------------k~~~ItfIDTPGh-------E 553 (996)
|+|+|.||+|||||+|+|.+.+......+++|++.....+.+.-.. ....+.|+||||. +
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988888888999988765555442110 0124999999992 1
Q ss_pred chHHHHHHhhhcCCeEEEEEecCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsd 577 (996)
.+.......++.+|++++|||+.+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 233333445688999999999853
No 331
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.40 E-value=1.7e-06 Score=95.59 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=81.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccc--------cCCceeeeceEEEEEeeCCccccEEEEeCCCcc----------
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE---------- 553 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se--------~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE---------- 553 (996)
++|.++|..|.|||||+|.|++....... ....|..+......+.-++....++|+||||..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 57999999999999999999976554332 011233344444555445667789999999921
Q ss_pred --------chHHHHHH-------hh--hcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-----
Q 001915 554 --------AFGAMRAR-------GA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----- 610 (996)
Q Consensus 554 --------~F~~mr~r-------ga--~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~----- 610 (996)
.|...... .. ...|++||+++.+ +++.+.+++.++.+.. .+++|-|+.|.|.....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHHH
Confidence 11111110 11 3468999999986 5889999998888764 58899999999985422
Q ss_pred hhHHHHHHHhcCC
Q 001915 611 PERVMQELSSIGL 623 (996)
Q Consensus 611 ~erv~~eL~~~gl 623 (996)
...+...+..+++
T Consensus 164 k~~i~~~l~~~~I 176 (281)
T PF00735_consen 164 KQRIREDLEENNI 176 (281)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCc
Confidence 2334555555554
No 332
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.39 E-value=1.6e-06 Score=89.12 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh--hHHHHHHHhcCCCCCC
Q 001915 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPED 627 (996)
Q Consensus 550 PGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~--erv~~eL~~~gl~~e~ 627 (996)
|.+..|..++..++..+|++++|+|+.+....+..+. .....+.|+|+|+||+|+..... ................
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 3444578889999999999999999988554444333 22235789999999999853221 1122221000000000
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+ ...+++++||++|.|+++|++.|...
T Consensus 97 ~-~~~~i~~vSA~~~~gi~eL~~~l~~~ 123 (190)
T cd01855 97 L-KPKDVILISAKKGWGVEELINAIKKL 123 (190)
T ss_pred C-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 0 11358999999999999999998754
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=1.4e-06 Score=94.25 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=65.5
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCC-ChhH-HHHHHHHHHcCCCEEEEecccCCCCCChhHHH-HHHHhcCCCCCCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGI-RPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVM-QELSSIGLMPEDWG 629 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt-~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~-~eL~~~gl~~e~~g 629 (996)
++|..+...++..+|.+++|+|+.+.. .... ..++..+...++|+++|+||+||.... .+. +++..+. .+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~~~~~----~~- 96 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQLDIYR----NI- 96 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHHHHHH----HC-
Confidence 667777777899999999999998744 3333 333445556789999999999995322 111 1221111 11
Q ss_pred CCCcEEEeccCCCCChhhHHHHHH
Q 001915 630 GDIPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 630 g~ipvVeISAktGeGIdEL~eaIl 653 (996)
.++++++||++|.||++|++.|.
T Consensus 97 -g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 97 -GYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred -CCeEEEEecCCchhHHHHHhhhc
Confidence 26799999999999999998874
No 334
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=9.9e-07 Score=94.13 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=94.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHH-----HHhhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR-----ARGAR 564 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr-----~rga~ 564 (996)
..+|.+||..|+|||||=..+.....+ .....|-|+|+...++.+ -| +..+++||+.|++.|.... ..-++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf--lG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF--LG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh--hh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 468999999999999987766644433 344567788876665543 22 3579999999999776543 34568
Q ss_pred cCCeEEEEEecCCCCChhHHHHHHHHHH---cCC---CEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 565 VTDIAVIVVAADDGIRPQTNEAIAHAKA---AGV---PIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt~E~I~~ak~---~~I---PIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
..+++|+|+|+....+..+.+..+.+.+ .+- .+.+.+.|+|+...+..+..-+.....+....-...+.++++|
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 8899999999987666655555443221 233 3888999999976554333222222111100001236778887
Q ss_pred cCC
Q 001915 639 ALK 641 (996)
Q Consensus 639 Akt 641 (996)
-..
T Consensus 161 iwD 163 (295)
T KOG3886|consen 161 IWD 163 (295)
T ss_pred hhh
Confidence 664
No 335
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.26 E-value=7.9e-06 Score=83.02 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCCcc-chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCC
Q 001915 549 TPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPED 627 (996)
Q Consensus 549 TPGhE-~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~ 627 (996)
.|||. ....+....+..+|++++|+|+.++......+.+..+ .+.|+|+++||+|+.. .+.....+..+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~--~~~~~~~~~~~~~---- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD--PKKTKKWLKYFES---- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC--hHHHHHHHHHHHh----
Confidence 47764 3445556677999999999999887665555444433 3689999999999953 2222111111110
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
....++.+||+++.|+++|.+.|...
T Consensus 74 --~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 --KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01358999999999999999998754
No 336
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.23 E-value=1e-05 Score=69.55 Aligned_cols=79 Identities=38% Similarity=0.465 Sum_probs=68.8
Q ss_pred EEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 888 AEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 888 A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
+.|..+|.. +.+.++.|+|.+|.|+.|..+++.+.+. .+..+|.+|.+++..+.++.+|..|++.+.++.+++.||.+
T Consensus 3 ~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~-~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~~~~~g~~l 81 (83)
T cd01342 3 ALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGG-GVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKDDIKIGDTL 81 (83)
T ss_pred eEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCc-eeEEEEeEeEecCceeceecCCCEEEEEEccccccCCCCEe
Confidence 456677764 5789999999999999999999998522 36789999999999999999999999999988899999987
Q ss_pred E
Q 001915 967 E 967 (996)
Q Consensus 967 e 967 (996)
.
T Consensus 82 ~ 82 (83)
T cd01342 82 T 82 (83)
T ss_pred c
Confidence 4
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=1.2e-05 Score=80.36 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=62.1
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHH--cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~--~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
..+..+|++++|+|+.++.........+.+.. .++|+|+|+||+|+.. .+.....+..+.- .+ ...++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~~~~~~---~~--~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWVKILSK---EY--PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHHHHHhc---CC--cEEEEEee
Confidence 45688999999999998776666666666654 3489999999999953 2333333333221 11 12268899
Q ss_pred cCCCCChhhHHHHHHHH
Q 001915 639 ALKGEKVDDLLETIMLV 655 (996)
Q Consensus 639 AktGeGIdEL~eaIl~l 655 (996)
|+++.|+++|++.|...
T Consensus 77 a~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 77 INNPFGKGSLIQLLRQF 93 (157)
T ss_pred ccccccHHHHHHHHHHH
Confidence 99999999999998654
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=3.7e-06 Score=84.02 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+...|+++|.+|+|||||+|+|++... ..+..+|+|++...+. .. ..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~----~~---~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT----LM---KRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE----cC---CCEEEEECcC
Confidence 456789999999999999999997655 4677888888753322 11 2489999999
No 339
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.09 E-value=1.4e-05 Score=73.93 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=69.2
Q ss_pred EEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCC
Q 001915 888 AEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGD 964 (996)
Q Consensus 888 A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD 964 (996)
.-|..+|+. +.|.++..+|..|.|+.|..++++..+ ...+|.||..+.++++++.+|+.|+|.|.+. ++++.||
T Consensus 7 ~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~G~ 83 (91)
T cd03693 7 LPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKRGD 83 (91)
T ss_pred EEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCCcC
Confidence 457789984 568888889999999999999999887 4799999999999999999999999999984 5899999
Q ss_pred EEEE
Q 001915 965 IIEA 968 (996)
Q Consensus 965 ~ie~ 968 (996)
+|-.
T Consensus 84 vl~~ 87 (91)
T cd03693 84 VAGD 87 (91)
T ss_pred EEcc
Confidence 8853
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.08 E-value=4.2e-05 Score=92.31 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccc-cCCceeeeceEEEEEeeCCccccEEEEeCCCccch------HHH---
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAM--- 558 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se-~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F------~~m--- 558 (996)
-..+|++||.+|+|||||+|.|++.... ... .+++|... .+...++ +..+.||||||.... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~---ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQ---EIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEE---EEEEEEC--CceEEEEECCCCCccccchHHHHHHHH
Confidence 4468999999999999999999987644 332 24444421 1122223 467999999994321 111
Q ss_pred -HHHhhh--cCCeEEEEEecCCCCC-hhHHHHHHHHHH-cC----CCEEEEecccCCC
Q 001915 559 -RARGAR--VTDIAVIVVAADDGIR-PQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (996)
Q Consensus 559 -r~rga~--~ADiVILVVDAsdgv~-~Qt~E~I~~ak~-~~----IPIIVVINKiDL~ 607 (996)
...++. ..|++|||+.++.... ......++.+.. .+ .-+||+.+..|..
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 122333 4799999987753222 233334444432 22 3489999999984
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.08 E-value=5.4e-06 Score=85.36 Aligned_cols=56 Identities=20% Similarity=0.530 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
..+.+|+++|.+|+|||||+|+|.+... ..+..+|+|++...+.+ + ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----D---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----C---CCEEEEECcC
Confidence 4568999999999999999999997665 57788899987543332 2 2589999999
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.08 E-value=9.3e-06 Score=81.11 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=57.5
Q ss_pred CeEEEEEecCCCCChhHHHHH-HHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 567 DIAVIVVAADDGIRPQTNEAI-AHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~I-~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|++|+|+|+.++......... ..+...++|+|+|+||+|+.. .+.+..++..+. ..+ ...++++||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~--~~~~~~~~~~~~---~~~--~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP--KEVLRKWLAYLR---HSY--PTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC--HHHHHHHHHHHH---hhC--CceEEEEeccCCcCh
Confidence 789999999887655554444 455667899999999999943 232222221111 001 246899999999999
Q ss_pred hhHHHHHHHH
Q 001915 646 DDLLETIMLV 655 (996)
Q Consensus 646 dEL~eaIl~l 655 (996)
++|++.|...
T Consensus 74 ~~L~~~i~~~ 83 (155)
T cd01849 74 EKKESAFTKQ 83 (155)
T ss_pred hhHHHHHHHH
Confidence 9999998754
No 343
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.07 E-value=1.3e-05 Score=86.61 Aligned_cols=85 Identities=24% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-hHHH------HHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAM------RAR 561 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-F~~m------r~r 561 (996)
.-..+|+++|-|.+||||||..|..+.-....+..+|.. .++-.+..++-.++++|.||.-. -+.- ...
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLt----cIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLT----CIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEE----eecceEEecCceEEEecCcccccccccCCCCCceEEE
Confidence 445689999999999999999999876655555555533 22222233445799999999422 1111 112
Q ss_pred hhhcCCeEEEEEecCC
Q 001915 562 GARVTDIAVIVVAADD 577 (996)
Q Consensus 562 ga~~ADiVILVVDAsd 577 (996)
.++.||++++|+|++.
T Consensus 136 vArtaDlilMvLDatk 151 (364)
T KOG1486|consen 136 VARTADLILMVLDATK 151 (364)
T ss_pred EeecccEEEEEecCCc
Confidence 3578999999999985
No 344
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=2.6e-05 Score=87.94 Aligned_cols=117 Identities=22% Similarity=0.333 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccC-CceeeeceEEEEE-------------------eeCC----------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG-GITQGIGAYKVQV-------------------PVDG---------- 539 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~g-GiTqdI~a~~V~i-------------------~idg---------- 539 (996)
..|-|.+||.-..||||++++|+...+.....+ ..|.+. +.+-+ ++.+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~--Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR--FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce--eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 457899999999999999999998776532222 112221 11110 0000
Q ss_pred ----------ccccEEEEeCCCc-----------cchHHHHHHhhhcCCeEEEEEecCC-CCChhHHHHHHHHHHcCCCE
Q 001915 540 ----------KLQPCVFLDTPGH-----------EAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPI 597 (996)
Q Consensus 540 ----------k~~~ItfIDTPGh-----------E~F~~mr~rga~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IPI 597 (996)
---.++|+||||. -.|.......+..+|.+||+||+.. .+.+.+.+.+..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0125899999992 3477778888899999999999975 67888899999998777789
Q ss_pred EEEecccCCCC
Q 001915 598 VIAINKIDKDG 608 (996)
Q Consensus 598 IVVINKiDL~~ 608 (996)
=||+||.|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999853
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.05 E-value=1.6e-05 Score=87.28 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCCccc-hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCC
Q 001915 549 TPGHEA-FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPED 627 (996)
Q Consensus 549 TPGhE~-F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~ 627 (996)
-|||.. ........+..+|++|+|+|+.++...........+ .+.|+|+|+||+|+.. .......+..+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~--~~~~~~~~~~~~~---- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLAD--PAVTKQWLKYFEE---- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCC--HHHHHHHHHHHHH----
Confidence 488743 334455677999999999999887665555444444 3789999999999943 2222222111110
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
. ..+++++||+++.|+++|++.|..+..
T Consensus 76 ~--~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 K--GIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0 146899999999999999998876543
No 346
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.01 E-value=5.3e-06 Score=77.60 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCC-ceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gG-iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.+|+++|+.++|||+|+.++....+. +.+. .|.+ |......+.+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~--~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD--YVPTVFTIG---------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc--ccCceehhh---------------------------hhhccccccCCCCEEE
Confidence 37999999999999999999655443 1111 1111 3333455667889999
Q ss_pred EEEecCCCCChh--HHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 571 IVVAADDGIRPQ--TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 571 LVVDAsdgv~~Q--t~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
+|++.+...... +...+......++|.++++||+|+.... .+..+. ..+++++||++|.|+.
T Consensus 52 ~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~------------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE------------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH------------HHHHHHHhCCCcchhh
Confidence 999887633221 2222222223457789999999983211 111110 1246678999999984
No 347
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.00 E-value=4.3e-05 Score=86.53 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-----ccC---CceeeeceEEEEEeeCCccccEEEEeCCCcc-------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-----EAG---GITQGIGAYKVQVPVDGKLQPCVFLDTPGHE------- 553 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~s-----e~g---GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE------- 553 (996)
.-+++|.++|..|.|||||+|.|+....... ..+ ..|..+..+...+.-++-...++++||||.-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3567899999999999999999997644322 111 2444555556555556667789999999921
Q ss_pred -----------chHHHHH------Hh--h--hcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-
Q 001915 554 -----------AFGAMRA------RG--A--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN- 610 (996)
Q Consensus 554 -----------~F~~mr~------rg--a--~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~- 610 (996)
.|..... |. + ...|+|++.+-.+ +++.+.+.+.++.+.. .+.+|-|+-|.|....+
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHH
Confidence 1111110 11 1 3468899998765 6899999999888764 57899999999985422
Q ss_pred ----hhHHHHHHHhcC
Q 001915 611 ----PERVMQELSSIG 622 (996)
Q Consensus 611 ----~erv~~eL~~~g 622 (996)
.+.+++.+..+.
T Consensus 180 l~~~K~~I~~~i~~~n 195 (373)
T COG5019 180 LAEFKERIREDLEQYN 195 (373)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 244556666554
No 348
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=0.00024 Score=80.13 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cccC---C--------ceeeeceEEEEEe-------e-----
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAG---G--------ITQGIGAYKVQVP-------V----- 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~g---G--------iTqdI~a~~V~i~-------i----- 537 (996)
.++.+|+++|.+|+||||++..|... ++.. .+.. . .-.++.++..... +
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999887521 1110 0100 0 0011111111000 0
Q ss_pred -CCccccEEEEeCCCccchHH----HHHHh--------hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEeccc
Q 001915 538 -DGKLQPCVFLDTPGHEAFGA----MRARG--------ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKI 604 (996)
Q Consensus 538 -dgk~~~ItfIDTPGhE~F~~----mr~rg--------a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKi 604 (996)
...++.+.|+||||...+.. ..... ....+.++||+|++.+.. ....+......--+.-+++||+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECC
Confidence 12346799999999533211 11111 134688999999986432 2222222222112457889999
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHH
Q 001915 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (996)
Q Consensus 605 DL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~e 650 (996)
|-. ...-.+...+...+ .|+.+++ +|+++++|..
T Consensus 270 D~t-~~~G~~l~~~~~~~---------~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGT-AKGGVVFAIADELG---------IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC-CCccHHHHHHHHHC---------CCEEEEe--CCCChhhCcc
Confidence 953 33344555554443 5788888 8899987643
No 349
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.97 E-value=1.2e-05 Score=82.72 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC---------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~---------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+...++++|.+|+|||||+|+|+... ...+..+|+|++... +.++. .+.|+||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~----~~~~~---~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK----IPLGN---GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE----EecCC---CCEEEeCcC
Confidence 55789999999999999999998643 245567788988532 22222 489999999
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.3e-05 Score=90.26 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=94.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCcee----------------------eece-------------
Q 001915 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQ----------------------GIGA------------- 530 (996)
Q Consensus 486 ~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTq----------------------dI~a------------- 530 (996)
.+.++..+|+|.|..++||||++|+++..++..+..+.+|- .+++
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 35567889999999999999999999876655443332221 0110
Q ss_pred -----EE-EEEeeCCc-----cccEEEEeCCCc---cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC
Q 001915 531 -----YK-VQVPVDGK-----LQPCVFLDTPGH---EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP 596 (996)
Q Consensus 531 -----~~-V~i~idgk-----~~~ItfIDTPGh---E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP 596 (996)
+. +.+.+..+ .-.+.++|.||- ..+..........+|++|||+.+....+....+.+...... .|
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kp 262 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KP 262 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CC
Confidence 00 11111111 115789999994 44555555666889999999999887666666666666554 55
Q ss_pred -EEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 597 -IVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 597 -IIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+.||||.....+ +.+..++.++....+.- -.--++++||+.
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~e-A~DrvfFVS~~e 310 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKE-AADRVFFVSAKE 310 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhh-hcCeeEEEeccc
Confidence 888899999854333 33344433222211110 112478899874
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.89 E-value=3.3e-05 Score=76.13 Aligned_cols=76 Identities=22% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc--CCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~--~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
.+.+..+|++++|+|+.++...+..+....+... ++|+|+|+||+|+..... ......+...+ .++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~---------~~ii~ 76 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG---------IVVVF 76 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC---------CeEEE
Confidence 4567899999999999998877777777777665 899999999999943111 11122222211 46899
Q ss_pred eccCCCCC
Q 001915 637 ISALKGEK 644 (996)
Q Consensus 637 ISAktGeG 644 (996)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99999875
No 352
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.89 E-value=5.2e-05 Score=86.58 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=68.4
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC--ChhHHHHHH----HhcCCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQEL----SSIGLMP 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a--~~erv~~eL----~~~gl~~ 625 (996)
.+.|..+...+...+|++++|+|+.+....+..+..+++ .+.|+++|+||+|+... ..+++..++ ..+++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~- 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK- 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 567888888888999999999999886655555444443 27899999999998532 233444332 223321
Q ss_pred CCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 626 EDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 626 e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
...++++||++|.|+++|++.|..
T Consensus 127 -----~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 127 -----PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred -----cCcEEEecCCCCCCHHHHHHHHHH
Confidence 125899999999999999998854
No 353
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.88 E-value=6.6e-05 Score=68.12 Aligned_cols=77 Identities=23% Similarity=0.409 Sum_probs=66.4
Q ss_pred EEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCE
Q 001915 889 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDI 965 (996)
Q Consensus 889 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ 965 (996)
-|..+|+. ..|.++.-+|..|.++.|..+.++-.+ ..++|.||+.++++++++.+|++++|.|.+. ++++.||+
T Consensus 4 ~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~---~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 4 PIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred EEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC---ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 45678874 457677779999999999999888766 4799999999999999999999999999986 58999998
Q ss_pred EEE
Q 001915 966 IEA 968 (996)
Q Consensus 966 ie~ 968 (996)
+-|
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 753
No 354
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.88 E-value=2e-05 Score=77.70 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=41.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
+++++|.+|+|||||+|+|.+... ..+...|.|++... +.++. .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT----IFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE----EEeCC---CEEEEECCCc
Confidence 899999999999999999997765 45566778877532 22232 5899999995
No 355
>PRK12289 GTPase RsgA; Reviewed
Probab=97.87 E-value=4e-05 Score=87.40 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=58.7
Q ss_pred HhhhcCCeEEEEEecCCCC-Chh-HHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 561 RGARVTDIAVIVVAADDGI-RPQ-TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv-~~Q-t~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
..+.++|.+++|+|+.+.. .++ ....+..+...++|+|+|+||+||.. .+........+ ..| .++++++|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~--~~~~~~~~~~~----~~~--g~~v~~iS 156 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS--PTEQQQWQDRL----QQW--GYQPLFIS 156 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC--hHHHHHHHHHH----Hhc--CCeEEEEE
Confidence 3478999999999998643 332 23444555667999999999999953 22222222211 112 25689999
Q ss_pred cCCCCChhhHHHHHH
Q 001915 639 ALKGEKVDDLLETIM 653 (996)
Q Consensus 639 AktGeGIdEL~eaIl 653 (996)
|++|.|+++|++.|.
T Consensus 157 A~tg~GI~eL~~~L~ 171 (352)
T PRK12289 157 VETGIGLEALLEQLR 171 (352)
T ss_pred cCCCCCHHHHhhhhc
Confidence 999999999998874
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.87 E-value=3.4e-05 Score=82.46 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC--Ccccc-ccCCceeeeceEEEEEeeCCccccEEEEeCCCccch------HHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT--KVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAMRAR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s--~va~s-e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F------~~mr~r 561 (996)
-..|+|+|.+++|||||+|+|.+. .+... ....+|++|-.+...... +....+.|+||||.... ..+...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 347999999999999999999988 66543 345678887766655432 34568999999994221 122222
Q ss_pred hh--hcCCeEEEEEecCC
Q 001915 562 GA--RVTDIAVIVVAADD 577 (996)
Q Consensus 562 ga--~~ADiVILVVDAsd 577 (996)
.+ -.+|++|+.++...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 33 34899998887753
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=8.4e-05 Score=80.07 Aligned_cols=132 Identities=21% Similarity=0.290 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc-----c--cCCceeeeceEEEEEeeCCccccEEEEeCCCc-----------
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA-----E--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------- 552 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~s-----e--~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------- 552 (996)
.++|.++|.+|.|||||+|.|..+++..+ . .-.-|..+....-.+.-++-..+++++||||.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 36899999999999999999986654321 1 11123333332222333455667899999991
Q ss_pred ----------cchH-----HHHHHhh--hcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC----
Q 001915 553 ----------EAFG-----AMRARGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---- 610 (996)
Q Consensus 553 ----------E~F~-----~mr~rga--~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~---- 610 (996)
+.|. ..|.+.+ ...+++++.+..+ +.+.+-+.+.++.+.. -+.+|-|+-|.|.....
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHHH
Confidence 1111 1222333 2357888888776 4788889999888764 35688889999974322
Q ss_pred -hhHHHHHHHhcCC
Q 001915 611 -PERVMQELSSIGL 623 (996)
Q Consensus 611 -~erv~~eL~~~gl 623 (996)
.+++.+++..+++
T Consensus 205 FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 205 FKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHHHHHhcCc
Confidence 2456666766665
No 358
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.87 E-value=0.00028 Score=77.83 Aligned_cols=95 Identities=24% Similarity=0.294 Sum_probs=56.4
Q ss_pred ccccEEEEeCCCccchHHHHH-------Hhh-----hcCCeEEEEEecCCCCChhHHHHHHHHH-HcCCCEEEEecccCC
Q 001915 540 KLQPCVFLDTPGHEAFGAMRA-------RGA-----RVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVPIVIAINKIDK 606 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~-------rga-----~~ADiVILVVDAsdgv~~Qt~E~I~~ak-~~~IPIIVVINKiDL 606 (996)
.++.+.|+||||......... +.. ..+|.++||+|++.+ ......+.... ..+ +.-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 346899999999644322211 111 238999999999743 33333333332 222 45788999997
Q ss_pred CCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 607 DGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 607 ~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
.. ..-.+.......+ .|+.+++ +|+++++|.
T Consensus 230 ~~-~~G~~l~~~~~~~---------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 TA-KGGIILSIAYELK---------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CC-CccHHHHHHHHHC---------cCEEEEe--CCCChHhCc
Confidence 32 2333344333332 5788877 888887764
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.87 E-value=4.4e-05 Score=84.41 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCccch-HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCC
Q 001915 549 TPGHEAF-GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPED 627 (996)
Q Consensus 549 TPGhE~F-~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~ 627 (996)
-|||..= .......+..+|++|+|+|+.++......+....+. +.|+|+|+||+|+.. .......+..+. .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~--~~~~~~~~~~~~----~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLAD--PEVTKKWIEYFE----E 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCC--HHHHHHHHHHHH----H
Confidence 5887542 334456679999999999998877665554444443 789999999999943 222222221110 0
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
. ..+++.+||+++.|+++|++.|..+..
T Consensus 79 ~--~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 Q--GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0 146899999999999999998876543
No 360
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=7.4e-05 Score=85.04 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=89.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcccc-------ccCCceeeeceEEEEEeeCCccccEEEEeCCCc-----------
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA-------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------- 552 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~s-------e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------- 552 (996)
.+.+.++|..|.|||||+|.|+...+... ....-|..+..+.+.+.-++-..+++++||||.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47899999999999999999986643321 111224555566666655666778999999992
Q ss_pred -------cchHHHHH-------Hhh--hcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-----
Q 001915 553 -------EAFGAMRA-------RGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----- 610 (996)
Q Consensus 553 -------E~F~~mr~-------rga--~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~----- 610 (996)
+.|..... ... ...|+++|.+..+ +|+.+.+.+.++.+.. .+.+|-|+-|.|....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~ 179 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQF 179 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHHH
Confidence 11111100 112 2578999999876 5799999999888764 68899999999985432
Q ss_pred hhHHHHHHHhcCC
Q 001915 611 PERVMQELSSIGL 623 (996)
Q Consensus 611 ~erv~~eL~~~gl 623 (996)
..++++.+..+++
T Consensus 180 K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 180 KKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHHHHHHcCc
Confidence 2345555665544
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.86 E-value=2.5e-05 Score=86.39 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=46.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
..+..+|+|+|.+|+|||||+|+|++.+. .++..+|+|++..... .+ ..+.++||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~~---~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK----LG---KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE----eC---CcEEEEECCCc
Confidence 34667899999999999999999998765 5677889999864322 22 25899999994
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.84 E-value=3.6e-05 Score=78.25 Aligned_cols=58 Identities=33% Similarity=0.480 Sum_probs=44.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
..+.++++++|.+|+|||||+|+|....+ ......++|.+...+.+ + ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~----~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI----S---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe----c---CCEEEEECCCC
Confidence 44567999999999999999999998765 35556678877544332 2 35899999994
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.84 E-value=2.9e-05 Score=77.62 Aligned_cols=56 Identities=21% Similarity=0.391 Sum_probs=43.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.+...++++|.+|+|||||+|+|.+... ..+..+++|++..... ++ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~----~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK----LD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE----ec---CCEEEEECCC
Confidence 4678899999999999999999997653 4566678888754322 22 3599999999
No 364
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.83 E-value=0.00014 Score=81.02 Aligned_cols=155 Identities=14% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEe--eCCccccEEEEeCCCccchHHHHHHhhhc--
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP--VDGKLQPCVFLDTPGHEAFGAMRARGARV-- 565 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~--idgk~~~ItfIDTPGhE~F~~mr~rga~~-- 565 (996)
...+|.++|..++|||||+.+|.+..- ... ..++.+..+.+. ......++.+|=.-|......+....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~---~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats 125 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSET---VKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS 125 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccc---cCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence 456899999999999999999987541 111 223333333332 22233456666666755544444444432
Q ss_pred -C-CeEEEEEecCCCC--ChhH-------HHHHHH---------------------------------------------
Q 001915 566 -T-DIAVIVVAADDGI--RPQT-------NEAIAH--------------------------------------------- 589 (996)
Q Consensus 566 -A-DiVILVVDAsdgv--~~Qt-------~E~I~~--------------------------------------------- 589 (996)
+ -++||++|.+... ..+. .+++..
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d 205 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD 205 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence 2 4678888888641 1110 111100
Q ss_pred ------------HHHcCCCEEEEecccCCCC----------CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 590 ------------AKAAGVPIVIAINKIDKDG----------ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 590 ------------ak~~~IPIIVVINKiDL~~----------a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
....++|++||++|||... ...+.+..++..+.+. + ....|.+|+|...||+-
T Consensus 206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr---~--GaaLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR---Y--GAALIYTSVKETKNIDL 280 (473)
T ss_pred cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH---c--CceeEEeecccccchHH
Confidence 0114789999999999831 1122334444443332 1 25789999999999999
Q ss_pred HHHHHHH
Q 001915 648 LLETIML 654 (996)
Q Consensus 648 L~eaIl~ 654 (996)
|...|..
T Consensus 281 lyKYivh 287 (473)
T KOG3905|consen 281 LYKYIVH 287 (473)
T ss_pred HHHHHHH
Confidence 9998863
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.83 E-value=4e-05 Score=83.30 Aligned_cols=82 Identities=24% Similarity=0.180 Sum_probs=54.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~ 564 (996)
-+|.++|-|.+|||||+..|.+..-.+....++|.- .++-....++-+++++|.||.-. -......-++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~----~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT----TVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEE----EecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 379999999999999999998765554444444421 22222223456799999999421 1112223357
Q ss_pred cCCeEEEEEecCC
Q 001915 565 VTDIAVIVVAADD 577 (996)
Q Consensus 565 ~ADiVILVVDAsd 577 (996)
.|.++++|+|+..
T Consensus 136 tcnli~~vld~~k 148 (358)
T KOG1487|consen 136 TCNLIFIVLDVLK 148 (358)
T ss_pred cccEEEEEeeccC
Confidence 8999999999975
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.76 E-value=3.9e-05 Score=84.28 Aligned_cols=57 Identities=33% Similarity=0.506 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
.+..+++++|.+|+|||||+|+|.+... ..+..+|+|++...+.+ + ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~---~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----S---DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----C---CCEEEEECCCc
Confidence 4567899999999999999999997664 46677889987643222 2 25899999995
No 367
>PRK00098 GTPase RsgA; Reviewed
Probab=97.74 E-value=6e-05 Score=83.90 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=56.8
Q ss_pred hhcCCeEEEEEecCCCCC-hhH-HHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 563 ARVTDIAVIVVAADDGIR-PQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~-~Qt-~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+..+|++++|+|+.+... ... ...+..+...++|+++|+||+|+.. +.+........+ ..+ .++++++||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~~~~~~~~~----~~~--g~~v~~vSA~ 150 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEEARELLALY----RAI--GYDVLELSAK 150 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHHHHHHHHHH----HHC--CCeEEEEeCC
Confidence 589999999999976432 222 3344556677899999999999952 222222222211 111 2579999999
Q ss_pred CCCChhhHHHHH
Q 001915 641 KGEKVDDLLETI 652 (996)
Q Consensus 641 tGeGIdEL~eaI 652 (996)
+|.|+++|++.|
T Consensus 151 ~g~gi~~L~~~l 162 (298)
T PRK00098 151 EGEGLDELKPLL 162 (298)
T ss_pred CCccHHHHHhhc
Confidence 999999999876
No 368
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.72 E-value=8.6e-05 Score=82.22 Aligned_cols=84 Identities=30% Similarity=0.336 Sum_probs=58.2
Q ss_pred hhhcCCeEEEEEecCCCC-ChhHH-HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 562 GARVTDIAVIVVAADDGI-RPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv-~~Qt~-E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
-+..+|++++|+|+.++. ..... .++..+...++|+++|+||+||.... ......... ..+ .++++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--~~~~~~~~~----~~~--g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EEELELVEA----LAL--GYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--HHHHHHHHH----HhC--CCeEEEEEC
Confidence 368899999999998875 43332 34445566789999999999995431 111111111 011 258999999
Q ss_pred CCCCChhhHHHHHH
Q 001915 640 LKGEKVDDLLETIM 653 (996)
Q Consensus 640 ktGeGIdEL~eaIl 653 (996)
+++.|+++|++.|.
T Consensus 147 ~~g~gi~~L~~~L~ 160 (287)
T cd01854 147 KTGEGLDELREYLK 160 (287)
T ss_pred CCCccHHHHHhhhc
Confidence 99999999998764
No 369
>PRK12736 elongation factor Tu; Reviewed
Probab=97.72 E-value=0.0021 Score=74.34 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=124.2
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC--EEEEecC-CCC--hhHHh--------HHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFNV-KAP--GSVKT--------YADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIl~Fnv-~~~--~~~~~--------~A~~ 850 (996)
|+-|-.+-+...+..+..-++-+=|+.+.-| +-|+.=+.++...+- +|++.|= ... .+..+ +.+.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 9999888888888887777777777777644 445555666665553 5677772 221 12211 1122
Q ss_pred cC-----ceEEEechH---------hHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeC
Q 001915 851 KG-----VEIRLYRVI---------YDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKG 914 (996)
Q Consensus 851 ~~-----V~I~~~~II---------Y~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~ 914 (996)
.+ +.|+.-+-. |+-++.+.+++...++ |.....---+.-|-.+|.. +.|.|+.-+|.+|.|+.|
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVG 240 (394)
T ss_pred hCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecC
Confidence 23 455544433 3346667777766665 3222221235567789984 679999999999999999
Q ss_pred CcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 915 CGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 915 ~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
..+.++-.+. -...+|.||+.+.++|.++.+|+-|||.+.+. ++++.||+|-
T Consensus 241 d~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 241 DEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred CEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 9998875321 13579999999999999999999999999876 4899999984
No 370
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=97.71 E-value=9.9e-06 Score=68.18 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=40.7
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHh-CCcc-ccccccCCHHHHHHHHHhcCCc
Q 001915 410 KGMLIEELARNLAIGEGEILGSLYS-KGIK-PEGVQTLDKDMVKMICKDYEVE 460 (996)
Q Consensus 410 ~~itv~eLa~~l~~~~~eiik~L~~-~G~~-~~inq~Ld~e~~elia~E~g~~ 460 (996)
+.++|.|||..|+++..+|++.|+. +|++ .+.++.||.+.++.++++|+++
T Consensus 2 ~~i~V~elAk~l~v~~~~ii~~l~~~~Gi~~~~~~~~ld~e~~~~i~~~~~~k 54 (54)
T PF04760_consen 2 EKIRVSELAKELGVPSKEIIKKLFKELGIMVKSINSSLDEEEAELIAEEFGVK 54 (54)
T ss_dssp -EE-TTHHHHHHSSSHHHHHHHH-HHHTS---SSSS-EETTGGGHHHHHH---
T ss_pred CceEHHHHHHHHCcCHHHHHHHHHHhCCcCcCCCCCcCCHHHHHHHHHHhCcC
Confidence 4789999999999999999999977 9999 8899999999999999999864
No 371
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=4.6e-05 Score=85.84 Aligned_cols=57 Identities=33% Similarity=0.490 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
..+..++.|+|-||+|||||+|+|++... ..+..+|+|.+.....+ +. .+.++||||
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~----~~---~i~LlDtPG 186 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL----DD---GIYLLDTPG 186 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc----CC---CeEEecCCC
Confidence 34557899999999999999999997765 47788899988643332 22 399999999
No 372
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.67 E-value=0.00013 Score=83.54 Aligned_cols=86 Identities=24% Similarity=0.123 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeC-------------CccccEEEEeCCCc-----
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGH----- 552 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~id-------------gk~~~ItfIDTPGh----- 552 (996)
.+++|+|.||+|||||+++|++... ....++.+|.+.....+.++-. -....+.|+|.||-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6799999999999999999999887 6667788887776655554311 01235899999993
Q ss_pred --cchHHHHHHhhhcCCeEEEEEecCC
Q 001915 553 --EAFGAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 553 --E~F~~mr~rga~~ADiVILVVDAsd 577 (996)
+.+.......++.+|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2244555667799999999999864
No 373
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.65 E-value=0.00037 Score=63.36 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=67.5
Q ss_pred EEEEEEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCE
Q 001915 888 AEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDI 965 (996)
Q Consensus 888 A~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~ 965 (996)
.-|..+|+.+.|.+..-+|..|.++.|..+.++-.+. ..+|.||..+++.++++.+|..|+|.|.+.+ +++.||+
T Consensus 4 ~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~---~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 4 LPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKE---SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred EEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCc---EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 3466888755788888899999999999999998774 5899999999999999999999999999865 8999999
Q ss_pred EE
Q 001915 966 IE 967 (996)
Q Consensus 966 ie 967 (996)
|-
T Consensus 81 l~ 82 (83)
T cd03698 81 LC 82 (83)
T ss_pred Ee
Confidence 73
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.65 E-value=4.1e-05 Score=87.40 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH---HH-
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM---RA- 560 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m---r~- 560 (996)
...|.++|.+|+|||||+|+|.+.. ...+..+|+|+++.. +.++. .+.++||||......+ ..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~----~~~~~---~~~l~DtPG~~~~~~~~~~l~~ 226 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE----IPLDD---GHSLYDTPGIINSHQMAHYLDK 226 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE----EEeCC---CCEEEECCCCCChhHhhhhcCH
Confidence 3689999999999999999998643 346677899988532 22222 3689999994322111 10
Q ss_pred ---Hhh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC
Q 001915 561 ---RGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 561 ---rga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~ 608 (996)
..+ .......+.++....+.......+..+...+..+.+.++|.+..+
T Consensus 227 ~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 227 KDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred HHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 011 234556666665543222222222222223455677777777643
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=97.62 E-value=0.00071 Score=76.93 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=56.0
Q ss_pred cccEEEEeCCCccch----HHHHHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 541 LQPCVFLDTPGHEAF----GAMRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F----~~mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
++.+.|+||+|.-.. ....... ....|.++||+|+..+- ...+.+......--.--+++||+|... ..-.+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~-~~G~~ 298 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADA-KGGAA 298 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCC-CccHH
Confidence 356999999995432 1111111 23579999999997642 233333333321123567899999732 22333
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHH
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~e 650 (996)
....... ..|+.+++ +|+++++|..
T Consensus 299 ls~~~~~---------~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 299 LSIAYVI---------GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHHHHH---------CcCEEEEe--CCCChhhccc
Confidence 3333332 35788887 8999988653
No 376
>PLN03126 Elongation factor Tu; Provisional
Probab=97.61 E-value=0.0021 Score=76.44 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=124.1
Q ss_pred eeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcc--cCcCChhhHHHHHhcCC--EEEEecC-C-CCh---------
Q 001915 778 QLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQA--TGDISASDVDLAVASKA--IILGFNV-K-APG--------- 842 (996)
Q Consensus 778 ~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~--VG~ItesDV~lA~as~a--iIl~Fnv-~-~~~--------- 842 (996)
.+++| |+-|-.+-+.+.+..+..-++-+=|+.+. +.+-|+.=+.+|...+- +|+.+|= . ++.
T Consensus 145 ~i~li---DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 145 HYAHV---DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred EEEEE---ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHH
Confidence 45554 88888777788877777777777777655 44555555666666553 5667772 2 221
Q ss_pred hHHhHHHhc-----CceEEEec-------------------hHhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-
Q 001915 843 SVKTYADNK-----GVEIRLYR-------------------VIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS- 896 (996)
Q Consensus 843 ~~~~~A~~~-----~V~I~~~~-------------------IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~- 896 (996)
+++++.++. .+.+..-+ --|+-++.+.+++..+.+ |.....---+.-|..+|+.
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~ 301 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSIT 301 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeC
Confidence 122222222 34443221 114434455555555432 3322222234667799984
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
+.|.|+.-+|..|.|+.|..+.+.-.|. -...+|.||+.++++++++.+|+-|||.|.+. .|++.||+|-.
T Consensus 302 g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~ 374 (478)
T PLN03126 302 GRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAK 374 (478)
T ss_pred CceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEec
Confidence 5789888999999999999999886553 14578999999999999999999999999975 47999999854
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.58 E-value=0.00013 Score=74.94 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=46.5
Q ss_pred HHHHhcCCceeecChhhhHHHhhhcccCChhhhhcccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-c---cc----cCC
Q 001915 452 MICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-A---AE----AGG 523 (996)
Q Consensus 452 lia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-~---se----~gG 523 (996)
...+.+|++++..+...-+ ..+++...... ..++++|++|+|||||+|+|...... . +. -..
T Consensus 6 ~~y~~~gy~v~~~S~~~~~---------g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkH 75 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGE---------GIEELKELLKG-KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKH 75 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTT---------THHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS----S-----------
T ss_pred HHHHHcCCcEEEEeCCCCc---------CHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcc
Confidence 4457788887654322111 11222222323 78999999999999999999865321 1 11 113
Q ss_pred ceeeeceEEEEEeeCCccccEEEEeCCCccch
Q 001915 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 524 iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F 555 (996)
+|++...+. +.. ...++||||...|
T Consensus 76 TTt~~~l~~----l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 76 TTTHRELFP----LPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp ---SEEEEE----ETT---SEEEECSHHHHT-
T ss_pred cCCCeeEEe----cCC---CcEEEECCCCCcc
Confidence 444433222 222 3699999995443
No 378
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.56 E-value=0.00059 Score=80.71 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=91.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC--CccccEEEEeCCCccchHHHHHHhhhc---
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAFGAMRARGARV--- 565 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id--gk~~~ItfIDTPGhE~F~~mr~rga~~--- 565 (996)
...|.|+|..++|||||+.+|.+.. ....|..+++.+....-+ ....++.+|-..|...|..+....+..
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e-----~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE-----DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC-----CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 3589999999999999999987532 122233444444433211 223457777777766666665544421
Q ss_pred C-CeEEEEEecCCCC--ChhH-------HHHH------------------HHHH--------------------------
Q 001915 566 T-DIAVIVVAADDGI--RPQT-------NEAI------------------AHAK-------------------------- 591 (996)
Q Consensus 566 A-DiVILVVDAsdgv--~~Qt-------~E~I------------------~~ak-------------------------- 591 (996)
. -++|+|+|.+.+. +.+. .+++ .+.+
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2 4677889988631 1000 0000 0010
Q ss_pred --------------HcCCCEEEEecccCCCC-------CC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 592 --------------AAGVPIVIAINKIDKDG-------AN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 592 --------------~~~IPIIVVINKiDL~~-------a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
..++|++||++|+|... +. .+-+.+.|....+. + ...+|.+|++...+++-
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~---y--GAsL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLK---Y--GASLIYTSVKEEKNLDL 254 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHh---c--CCeEEEeeccccccHHH
Confidence 02579999999999732 11 12334444443332 1 25789999999999998
Q ss_pred HHHHHHH
Q 001915 648 LLETIML 654 (996)
Q Consensus 648 L~eaIl~ 654 (996)
|+..|..
T Consensus 255 L~~yi~h 261 (472)
T PF05783_consen 255 LYKYILH 261 (472)
T ss_pred HHHHHHH
Confidence 8888654
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00029 Score=80.32 Aligned_cols=85 Identities=21% Similarity=0.249 Sum_probs=58.8
Q ss_pred hhcCCeEEEEEecCCCCChhHHH-HHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 563 ARVTDIAVIVVAADDGIRPQTNE-AIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+.++|.+++|++..........+ ++..+...++|+|+|+||+|+..... ......+..+ ..+ .++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y----~~~--g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY----RNI--GYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHH----HhC--CCeEEEEeCC
Confidence 57799999999987766554433 33445567899999999999954321 1122222221 111 2579999999
Q ss_pred CCCChhhHHHHHH
Q 001915 641 KGEKVDDLLETIM 653 (996)
Q Consensus 641 tGeGIdEL~eaIl 653 (996)
++.|+++|++.|.
T Consensus 192 tg~GideL~~~L~ 204 (347)
T PRK12288 192 TGEGLEELEAALT 204 (347)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999885
No 380
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.54 E-value=0.0028 Score=74.63 Aligned_cols=180 Identities=17% Similarity=0.233 Sum_probs=125.0
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC---------cCChhhHHHHHhcCC--EEEEec-CCC------------
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASKA--IILGFN-VKA------------ 840 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~a--iIl~Fn-v~~------------ 840 (996)
-|+-|..+-+.+.+..+..-+.-+=|+.+.-| +-|..-..+|...+- +|++.| +..
T Consensus 90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~ 169 (447)
T PLN00043 90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDE 169 (447)
T ss_pred EECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHH
Confidence 68889888888888888877888888887766 345566666666553 566666 221
Q ss_pred -ChhHHhHHHhcC-----ceEEEec-----hH---------hHHHHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCc
Q 001915 841 -PGSVKTYADNKG-----VEIRLYR-----VI---------YDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSG 899 (996)
Q Consensus 841 -~~~~~~~A~~~~-----V~I~~~~-----II---------Y~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g 899 (996)
..+++.++++.| +.++.-+ -| |+ -..+.+++..+..|.....---+.-|..+|+. +.|
T Consensus 170 i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~-g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G 248 (447)
T PLN00043 170 IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK-GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIG 248 (447)
T ss_pred HHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccc-hHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcE
Confidence 123455555555 3232221 11 21 01233334443344332222234567799984 678
Q ss_pred eEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 900 RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 900 ~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.|+..+|..|.|+.|..+.+...|. ..+|.||..+.++|.++.+|+-|||.|.+. .+++.||+|-.
T Consensus 249 ~vv~G~V~~G~l~~Gd~v~~~P~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 249 TVPVGRVETGVIKPGMVVTFGPTGL---TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEEEEECCEEeeCCEEEEcCCCC---EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 9999999999999999999988775 579999999999999999999999999987 68999999843
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00036 Score=79.79 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=61.6
Q ss_pred hhcCCeEEEEEecCCCCChhHH-HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 563 ARVTDIAVIVVAADDGIRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~-E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+.+.|.+++|++++..+.+... ..+..+...+++.+||+||+||... .+....++.... ..++++++||++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~~-------~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEALA-------PGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHhC-------CCCcEEEEECCC
Confidence 4788999999999877776444 4556677789999999999999642 223334444331 236899999999
Q ss_pred CCChhhHHHHH
Q 001915 642 GEKVDDLLETI 652 (996)
Q Consensus 642 GeGIdEL~eaI 652 (996)
|.|+++|.++|
T Consensus 182 g~gl~~L~~~L 192 (356)
T PRK01889 182 GEGLDVLAAWL 192 (356)
T ss_pred CccHHHHHHHh
Confidence 99999999887
No 382
>PRK12735 elongation factor Tu; Reviewed
Probab=97.52 E-value=0.004 Score=72.14 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=116.0
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccCc--CChhhHHHHHhcC-C-EEEEecC-CC--Ch--------hHHhHHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATGD--ISASDVDLAVASK-A-IILGFNV-KA--PG--------SVKTYADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~--ItesDV~lA~as~-a-iIl~Fnv-~~--~~--------~~~~~A~~ 850 (996)
|+-|--+-+...+..+..-++-+=|+.+.-|. -++.=+.+|...+ . +|+.+|= .. .. +++++.+.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 77777666666666666666666677665543 2222334444433 2 3345661 11 11 12222322
Q ss_pred cC-----ceEEEechH-----------hHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEe
Q 001915 851 KG-----VEIRLYRVI-----------YDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 912 (996)
Q Consensus 851 ~~-----V~I~~~~II-----------Y~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 912 (996)
.+ +.++.-+-. |.=++++.+++...++ |.....---+.-|..+|+. +.|.|+..+|..|.|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~ 240 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVK 240 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEe
Confidence 22 444433322 2235666666666664 3222222234567899984 5789999999999999
Q ss_pred eCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 913 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 913 ~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.|..+.++-.+. -...+|.||+.+.++|.++.+|+-|||.+.+. ++++.||+|-.
T Consensus 241 ~gd~v~i~p~~~-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 241 VGDEVEIVGIKE-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred CCCEEEEecCCC-CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 999999886431 13578999999999999999999999999875 58999999854
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.52 E-value=0.00051 Score=80.34 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH------cCCccc--ccc---C--------CceeeeceEEEEEeeC------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIR------KTKVAA--AEA---G--------GITQGIGAYKVQVPVD------------ 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~------~s~va~--se~---g--------GiTqdI~a~~V~i~id------------ 538 (996)
++.+|+++|.+|+||||++..|. +.++.. .+. + +.-.++.++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 46689999999999999998875 222211 110 0 0001122222111001
Q ss_pred -CccccEEEEeCCCccchH----HHHHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCC
Q 001915 539 -GKLQPCVFLDTPGHEAFG----AMRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 539 -gk~~~ItfIDTPGhE~F~----~mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL 606 (996)
...+.+.|+||||.-... ...... ....|-++||+|++-|... ...+..+...--+--+++||+|-
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccC
Confidence 125789999999943322 222222 2457889999999765322 33334443333356788999996
No 384
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.51 E-value=0.00022 Score=80.20 Aligned_cols=87 Identities=25% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC----------C---ccccEEEEeCCCc-----
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----------G---KLQPCVFLDTPGH----- 552 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id----------g---k~~~ItfIDTPGh----- 552 (996)
.++++|+|.||+|||||+|+|.+........+.+|++..-..+.++.. . ....++++|++|-
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 349999999999999999999999888888899999887766665311 1 1235899999992
Q ss_pred --cchHHHHHHhhhcCCeEEEEEecCC
Q 001915 553 --EAFGAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 553 --E~F~~mr~rga~~ADiVILVVDAsd 577 (996)
+-...-....++.+|+++.|+++.+
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 3455556667789999999999864
No 385
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.51 E-value=0.00031 Score=61.79 Aligned_cols=68 Identities=35% Similarity=0.458 Sum_probs=60.1
Q ss_pred ceEEEEEEeeceEeeCCcEEEeeC--CEEEEEEEEeeeecccccccccccCceeEEEEcc--CCC-CCCCCEE
Q 001915 899 GRVAGCMVSEGKLVKGCGIRVIRD--GKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD--YDD-LEEGDII 966 (996)
Q Consensus 899 g~IaGc~V~~G~i~~~~~vrviR~--g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~--f~d-~~~GD~i 966 (996)
|.|+.++|.+|+|++|..++++++ +.--..++|.+|..++.++.+...|..||+.+.. .++ ++.||.|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 679999999999999999999763 2323669999999999999999999999999886 778 8999997
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0012 Score=76.24 Aligned_cols=148 Identities=22% Similarity=0.286 Sum_probs=77.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccc---cccCCceee------------------eceEEEEEe-------eC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQG------------------IGAYKVQVP-------VD 538 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~---se~gGiTqd------------------I~a~~V~i~-------id 538 (996)
...+.-+++++|++|+||||++..|....... ....-+|.| +....+... ..
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 44567899999999999999999886421100 011111111 111111100 01
Q ss_pred CccccEEEEeCCCccchHHH---HHH---hhhcCCeEEEEEecCCCCChhHHHHHHHHH-HcCCC-------EEEEeccc
Q 001915 539 GKLQPCVFLDTPGHEAFGAM---RAR---GARVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVP-------IVIAINKI 604 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~m---r~r---ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak-~~~IP-------IIVVINKi 604 (996)
..++.+.||||+|...+... ... .....+-.+||++++.+...-+ +.+.... ..+.| -=++++|.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEecc
Confidence 13467999999995432221 111 2233456799999987543322 2222222 22222 24677999
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 605 DL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
|-.. ..-.+...+...+ .|+.+++ +|++|.+
T Consensus 292 DEt~-~~G~~l~~~~~~~---------lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 292 DEAS-NLGGVLDTVIRYK---------LPVHYVS--TGQKVPE 322 (374)
T ss_pred ccCC-CccHHHHHHHHHC---------cCeEEEe--cCCCCCc
Confidence 9632 3444555555544 3455544 5666655
No 387
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0031 Score=75.49 Aligned_cols=143 Identities=20% Similarity=0.311 Sum_probs=76.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC--------Cccc--cccCCc-----------eeeeceEEEEEe------e-CC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT--------KVAA--AEAGGI-----------TQGIGAYKVQVP------V-DG 539 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s--------~va~--se~gGi-----------TqdI~a~~V~i~------i-dg 539 (996)
..+..+|+|+|..|+|||||+..|... ++.. .+...+ ..++.++..... + ..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 346789999999999999999887531 1110 000000 001101110000 0 01
Q ss_pred ccccEEEEeCCCccchHHHHH------HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhH
Q 001915 540 KLQPCVFLDTPGHEAFGAMRA------RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~------rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~er 613 (996)
..+.+.||||||...+..... ... .....+||+++..... ...+.++.+... .+.-+++||+|.. ...-.
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~-Dl~eii~~f~~~-~~~gvILTKlDEt-~~lG~ 502 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFS-DLDEVVRRFAHA-KPQGVVLTKLDET-GRFGS 502 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChh-HHHHHHHHHHhh-CCeEEEEecCcCc-cchhH
Confidence 346799999999543221111 111 2345678888775322 233444444433 4577999999973 23445
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
+...+...+ .|+.+++ +|++|
T Consensus 503 aLsv~~~~~---------LPI~yvt--~GQ~V 523 (559)
T PRK12727 503 ALSVVVDHQ---------MPITWVT--DGQRV 523 (559)
T ss_pred HHHHHHHhC---------CCEEEEe--CCCCc
Confidence 555555544 3555554 56777
No 388
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.47 E-value=0.00021 Score=71.09 Aligned_cols=56 Identities=23% Similarity=0.450 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
....+++++|.+++|||||+|+|.+.... .....|+|.+...+. .+ ..+.||||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~----~~---~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK----IT---SKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE----cC---CCEEEEECcC
Confidence 35678999999999999999999965432 344556665532111 12 2699999999
No 389
>PLN03127 Elongation factor Tu; Provisional
Probab=97.46 E-value=0.0056 Score=72.22 Aligned_cols=181 Identities=17% Similarity=0.212 Sum_probs=115.8
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC--EEEEec-CCC-C-hhHHhHH--------Hh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFN-VKA-P-GSVKTYA--------DN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIl~Fn-v~~-~-~~~~~~A--------~~ 850 (996)
|+-|--.-+.+.+..+..-++-+=|+.+.-| +-++.-+.++...+- +|+..| +.. + .+..+.. ..
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 7777666566666666666777777777554 334444555555553 456666 221 1 1211111 11
Q ss_pred -----cCceEEEechHh-----------HHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEe
Q 001915 851 -----KGVEIRLYRVIY-----------DLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 912 (996)
Q Consensus 851 -----~~V~I~~~~IIY-----------~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 912 (996)
..+.|+.-+-+. +-++.+.+++...++ |.....---..-|..+|+. +.|.|+..+|..|.|+
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~ 289 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIK 289 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEe
Confidence 135553222110 113445555555554 3222222234567799984 6799999999999999
Q ss_pred eCCcEEEee---CCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 913 KGCGIRVIR---DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 913 ~~~~vrviR---~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.|..+.++- +|. ...+|.||+.++++|.++.+|+-|||.+.+. .+++.||+|-.
T Consensus 290 ~Gd~v~i~p~~~~g~--~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~ 348 (447)
T PLN03127 290 VGEEVEIVGLRPGGP--LKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICK 348 (447)
T ss_pred cCCEEEEcccCCCCc--EEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEec
Confidence 999998882 232 4679999999999999999999999999975 58999999854
No 390
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.45 E-value=0.0047 Score=71.38 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=114.6
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC--EEEEec-CC-CCh---------hHHhHHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFN-VK-APG---------SVKTYADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIl~Fn-v~-~~~---------~~~~~A~~ 850 (996)
|+-|--+-+...+..+..-++-+=|+.+.-| +-|..-+.++...+- +|+++| +. ++. ++++++++
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 7778766666666666555666666666554 334444555555442 445677 22 111 12233333
Q ss_pred cC-----ceEEEec---------hHhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeC
Q 001915 851 KG-----VEIRLYR---------VIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKG 914 (996)
Q Consensus 851 ~~-----V~I~~~~---------IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~ 914 (996)
.+ +.++.-+ -.|+-+..+-+++...++ |.....---+.-|-.+|+. +.|.|+..+|.+|.|+.|
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVG 240 (394)
T ss_pred cCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCC
Confidence 33 4554322 234333444445555443 3222222234567789984 679999999999999999
Q ss_pred CcEEEee--CCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 915 CGIRVIR--DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 915 ~~vrviR--~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
..+.++- .+. ..+|.||+.+.+++.++.+|+-|||.+.+. .+++.||+|-
T Consensus 241 d~v~i~p~~~~~---~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 241 EEVEIVGLKDTR---KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred CEEEEecCCCCc---EEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 9998874 232 478999999999999999999999999875 5899999983
No 391
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.39 E-value=0.00095 Score=60.66 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=64.6
Q ss_pred EEEEEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEE
Q 001915 889 EVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDII 966 (996)
Q Consensus 889 ~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~i 966 (996)
-|..+|+.. |.+..-+|..|.|+.|..+.+.-.+. ..+|.||+.+++++.++.+|+-|+|.|.+. ++++.||+|
T Consensus 5 ~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~---~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 5 PIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKT---QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCc---EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 456788754 77777799999999999999988774 578999999999999999999999999964 589999987
Q ss_pred E
Q 001915 967 E 967 (996)
Q Consensus 967 e 967 (996)
-
T Consensus 81 ~ 81 (82)
T cd04089 81 C 81 (82)
T ss_pred e
Confidence 3
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.39 E-value=0.00035 Score=77.99 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc-c---ccccC----CceeeeceEEEEEeeCCccccEEEEeCCCccchH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV-A---AAEAG----GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v-a---~se~g----GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~ 556 (996)
...+++|++|+|||||+|+|..... . .++.. .||++... +.+.+. =.++||||...|.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l----~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVEL----FPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEE----EEcCCC---CEEEeCCCCCccC
Confidence 4889999999999999999985321 1 22222 35555433 333322 3799999965543
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=97.38 E-value=0.00026 Score=81.12 Aligned_cols=55 Identities=27% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
...+.|+|.+|+|||||+|+|+... ...+..+|+|++. ..+.+++ ...++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~----~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK----IEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee----EEEEcCC---CcEEEECCCc
Confidence 4589999999999999999998532 2356788999875 2333333 2589999995
No 394
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.37 E-value=0.0043 Score=72.32 Aligned_cols=181 Identities=17% Similarity=0.240 Sum_probs=117.4
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEEcccCc-----CChhhHHHHHhcC--CEEEEec-CCC---Ch--------hH
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD-----ISASDVDLAVASK--AIILGFN-VKA---PG--------SV 844 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~-----ItesDV~lA~as~--aiIl~Fn-v~~---~~--------~~ 844 (996)
=-|+-|.-+-+...+..+..-++-+=|+.+.-|. -+...+.++...+ -+|+..| +.. +. ++
T Consensus 89 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei 168 (426)
T TIGR00483 89 IVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEV 168 (426)
T ss_pred EEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHH
Confidence 3577886655566666666667777777776662 2233344554443 3555555 222 11 23
Q ss_pred HhHHHhcC-----ceEEEec-----hHhHHH--------HHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEE
Q 001915 845 KTYADNKG-----VEIRLYR-----VIYDLI--------DDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCM 905 (996)
Q Consensus 845 ~~~A~~~~-----V~I~~~~-----IIY~Li--------ddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~ 905 (996)
++++++.+ +.++.-+ -|.++. .++.+++..+.+|.....---+..|..+|+. +.|.|+.-+
T Consensus 169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~ 248 (426)
T TIGR00483 169 SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGR 248 (426)
T ss_pred HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEE
Confidence 33455444 2333221 122111 2344555555555432221234667789984 679999999
Q ss_pred EeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 906 VSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 906 V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
|..|.|+.|..+.+.-.|. ..+|.||..+.+++.++.+|+-|||.+.+. .+++.||+|-
T Consensus 249 v~~G~i~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 249 VETGVLKPGDKVVFEPAGV---SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred EccceeecCCEEEECCCCc---EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEe
Confidence 9999999999999987774 579999999999999999999999999975 5899999984
No 395
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.36 E-value=0.0011 Score=61.15 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=66.0
Q ss_pred EEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeC--CEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCC
Q 001915 889 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRD--GKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEG 963 (996)
Q Consensus 889 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~--g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~G 963 (996)
-|..+|+. +.|.|..-+|..|.++.|..+.++-. |+ -+..+|.||+.+++.++++.+|+.|+|.|.+. .+++.|
T Consensus 4 ~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G 82 (87)
T cd03694 4 QIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-FRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLRKG 82 (87)
T ss_pred EEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-EeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcCCc
Confidence 46688984 56888888999999999999998865 43 24689999999999999999999999999875 489999
Q ss_pred CEE
Q 001915 964 DII 966 (996)
Q Consensus 964 D~i 966 (996)
|+|
T Consensus 83 ~vl 85 (87)
T cd03694 83 MVL 85 (87)
T ss_pred cEE
Confidence 987
No 396
>CHL00071 tufA elongation factor Tu
Probab=97.35 E-value=0.009 Score=69.54 Aligned_cols=180 Identities=17% Similarity=0.232 Sum_probs=114.2
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC-C-EEEEec-CCC-Chh---------HHhHHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-A-IILGFN-VKA-PGS---------VKTYADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-a-iIl~Fn-v~~-~~~---------~~~~A~~ 850 (996)
|+-|--+-+...+..+..-++-+-++.+.-| +-|+.=+.++...+ . +|++.| +.. +.+ +.++.++
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777666666666666666777767766544 23333344444444 2 556666 222 111 1122222
Q ss_pred cC-----ceEEEech-------------------HhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEE
Q 001915 851 KG-----VEIRLYRV-------------------IYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGC 904 (996)
Q Consensus 851 ~~-----V~I~~~~I-------------------IY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc 904 (996)
.+ +.|..-+- -|+-+..+-+++...++ |.....---+.-|..+|.. +.|.|+.-
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G 240 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATG 240 (409)
T ss_pred hCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEE
Confidence 22 44432111 14434555555555553 3222222235567789974 57899999
Q ss_pred EEeeceEeeCCcEEEee--CCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEEEE
Q 001915 905 MVSEGKLVKGCGIRVIR--DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDIIEA 968 (996)
Q Consensus 905 ~V~~G~i~~~~~vrviR--~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~ie~ 968 (996)
+|..|.|+.|..+.++- ++ ...+|.||+.+++.++++.+|+-|||.+.+.+ +++.||+|-.
T Consensus 241 ~V~sG~l~~Gd~v~i~p~~~~---~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~ 305 (409)
T CHL00071 241 RIERGTVKVGDTVEIVGLRET---KTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAK 305 (409)
T ss_pred EEecCEEeeCCEEEEeeCCCC---cEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEec
Confidence 99999999999998763 34 35799999999999999999999999998765 8999999853
No 397
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.35 E-value=0.00088 Score=75.36 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=51.5
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC--------ChhHHHHHHHHH---H----cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI--------RPQTNEAIAHAK---A----AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv--------~~Qt~E~I~~ak---~----~~IPIIVVINKi 604 (996)
.+..+.+||++|+..+...|..++..++++|+|+|.++-- .....+.+..+. . .++|+++++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 3578999999999999999999999999999999998621 112223322222 1 478999999999
Q ss_pred CC
Q 001915 605 DK 606 (996)
Q Consensus 605 DL 606 (996)
|+
T Consensus 239 D~ 240 (317)
T cd00066 239 DL 240 (317)
T ss_pred HH
Confidence 96
No 398
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.31 E-value=0.0019 Score=73.52 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-----------CChhHHHHHHHHHH----cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-----------IRPQTNEAIAHAKA----AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-----------v~~Qt~E~I~~ak~----~~IPIIVVINKi 604 (996)
.+..+.+||.+|+..+...|..++..++++|+|+|+++- ........+..+.. .++|++|++||+
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 346799999999999999999999999999999999862 11222222222221 468999999999
Q ss_pred CC
Q 001915 605 DK 606 (996)
Q Consensus 605 DL 606 (996)
|+
T Consensus 262 D~ 263 (342)
T smart00275 262 DL 263 (342)
T ss_pred Hh
Confidence 97
No 399
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.31 E-value=0.001 Score=67.45 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
|.+.++|..|+|||||++++...
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 57899999999999999998754
No 400
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=9.4e-05 Score=84.42 Aligned_cols=115 Identities=30% Similarity=0.390 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc-------CCc---------------------cccccCCceeeeceEEEEEeeCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK-------TKV---------------------AAAEAGGITQGIGAYKVQVPVDGKL 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~-------s~v---------------------a~se~gGiTqdI~a~~V~i~idgk~ 541 (996)
-.++|+++||+++||||+.-..+. ..+ ......++|+++... .+....
T Consensus 6 ~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~----~~~t~k 81 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW----KFETSK 81 (391)
T ss_pred cccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEee----ccccee
Confidence 457899999999999987553210 000 001112244332221 223456
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC-------CCChhHHHHHHHHHHcCC-CEEEEecccCCCC
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAGV-PIVIAINKIDKDG 608 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd-------gv~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~ 608 (996)
+.++++|.|||..|...+..+...+|++++++++.- ....|++++..++...++ ++|+.+||||...
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 789999999999999999999999999999999843 346899999988888875 5899999999743
No 401
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.30 E-value=0.0086 Score=69.77 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=113.7
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcc----cCcCChhhHHHHHhcC--CEEEEecC-CCC---h--------hHHh
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQA----TGDISASDVDLAVASK--AIILGFNV-KAP---G--------SVKT 846 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~----VG~ItesDV~lA~as~--aiIl~Fnv-~~~---~--------~~~~ 846 (996)
-|+-|.-+-+...+..+..-++-+-|+.+. +.+.+...+.++...+ .+|+..|= ... . ++++
T Consensus 89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~ 168 (425)
T PRK12317 89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSK 168 (425)
T ss_pred EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence 677775433344444455556666666553 3345556666666655 36666662 221 1 2223
Q ss_pred HHHhcC-----ceEEEech-----HhHHH--------HHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEe
Q 001915 847 YADNKG-----VEIRLYRV-----IYDLI--------DDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVS 907 (996)
Q Consensus 847 ~A~~~~-----V~I~~~~I-----IY~Li--------ddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~ 907 (996)
+++..+ +.|+.-+- |-++. ..+.++|..+..|.....---+.-|..+|.. +.|.|+..+|.
T Consensus 169 ~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~ 248 (425)
T PRK12317 169 LLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVE 248 (425)
T ss_pred HHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEe
Confidence 333334 23332221 11111 1244455554444322211224567789984 67999999999
Q ss_pred eceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEEE
Q 001915 908 EGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDIIE 967 (996)
Q Consensus 908 ~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~ie 967 (996)
.|.|+.|..+.++-.|. ..+|.||+.+.++|.++.+|+-|||.+.+.+ +++.||+|-
T Consensus 249 ~G~v~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 249 TGVLKVGDKVVFMPAGV---VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred eccEecCCEEEECCCCC---eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEec
Confidence 99999999999887664 5799999999999999999999999999764 899999983
No 402
>PRK00049 elongation factor Tu; Reviewed
Probab=97.29 E-value=0.011 Score=68.44 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=112.8
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC-CEE-EEecC-CCC--hhHH--------hHHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-AII-LGFNV-KAP--GSVK--------TYADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-aiI-l~Fnv-~~~--~~~~--------~~A~~ 850 (996)
|+-|-.+-+......+..-++-+-++.+.-| +-++.=+.++...+ ..| +.+|= ... .+.. ++...
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 7777665566666666666666666666544 22223344444444 233 45552 111 1111 11111
Q ss_pred -----cCceEEEechH-----------hHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEe
Q 001915 851 -----KGVEIRLYRVI-----------YDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 912 (996)
Q Consensus 851 -----~~V~I~~~~II-----------Y~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 912 (996)
..+.|..-+-. |+-++.+.+++...++ |.....---+.-|..+|+. +.|.|+..+|..|.|+
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~ 240 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIK 240 (396)
T ss_pred cCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEe
Confidence 12444332221 4345566666666554 3222211235567799984 6799999999999999
Q ss_pred eCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 913 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 913 ~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.|..+.++=-+. -...+|.||+.+.++|.++.+|+-|||.+.+. .|++.||+|-.
T Consensus 241 ~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 241 VGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred cCCEEEEeecCC-CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 999998863211 13578999999999999999999999999986 58999999854
No 403
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.28 E-value=0.0021 Score=58.53 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=64.2
Q ss_pred EEEEEeecC-CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 889 EVRAIFSSG-SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 889 ~V~~vF~~~-~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
-|..+|+.+ .+..+..+|..|.++.|..+.++-.+. ..+|.||+.+.+++.++.+|.-|||.+.+..+++.||+|
T Consensus 4 ~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~---~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl 79 (81)
T cd03695 4 PVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK---TSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVI 79 (81)
T ss_pred eEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC---eEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEE
Confidence 466888743 444555599999999999998887663 578999999999999999999999999998899999987
No 404
>PRK12288 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.00029 Score=80.36 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccC-------CceeeeceEEEEEeeCCccccEEEEeCCCccchH
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAG-------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va-~se~g-------GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~ 556 (996)
.++|+|.+|+|||||+|+|...... .++.. .+|++...+.+ .+. ..++||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l----~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF----PHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe----cCC---CEEEECCCCCccc
Confidence 4899999999999999999865432 33332 24555433332 222 3599999966554
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00027 Score=80.74 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-ccccccCC-------ceeeeceEEEEEeeCCccccEEEEeCCCccch
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGG-------ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~-va~se~gG-------iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F 555 (996)
.++|+|.+|+|||||+|+|+... ...+...+ +|++...+.+ .+. ..|+||||...|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l----~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL----PNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC----CCC---cEEEeCCCcccc
Confidence 58999999999999999998653 33444444 6777533332 222 379999996544
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0048 Score=72.63 Aligned_cols=146 Identities=26% Similarity=0.338 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--ccc--CCc---------eeeeceEEEEEeeC-----------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEA--GGI---------TQGIGAYKVQVPVD----------- 538 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~--gGi---------TqdI~a~~V~i~id----------- 538 (996)
.+|.+|.++|.+|+||||++..|... ++.. .+. ++. ..++.++......+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 46778999999999999998877421 1110 000 000 00111111100000
Q ss_pred CccccEEEEeCCCccchHHH-----HH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCCh
Q 001915 539 GKLQPCVFLDTPGHEAFGAM-----RA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~m-----r~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~ 611 (996)
...+.+.|+||||.-.+... .. ..+..+|.++||+|++.+ ....+.+..... .++ .-+++||+|-. ...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~-a~~ 248 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT-AKG 248 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC-Ccc
Confidence 02247999999995443221 11 223568999999999875 223333333222 244 35778999963 222
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
-.+.......+ .|+.+++ +|+++++|.
T Consensus 249 G~~ls~~~~~~---------~Pi~fig--~Ge~v~Dle 275 (437)
T PRK00771 249 GGALSAVAETG---------APIKFIG--TGEKIDDLE 275 (437)
T ss_pred cHHHHHHHHHC---------cCEEEEe--cCCCcccCC
Confidence 33333333333 4666665 477776653
No 407
>PRK13796 GTPase YqeH; Provisional
Probab=97.23 E-value=0.0015 Score=74.89 Aligned_cols=92 Identities=28% Similarity=0.280 Sum_probs=58.6
Q ss_pred chHHHHHHhhhcCC-eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC--ChhHHHHHHH----hcCCCCC
Q 001915 554 AFGAMRARGARVTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELS----SIGLMPE 626 (996)
Q Consensus 554 ~F~~mr~rga~~AD-iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a--~~erv~~eL~----~~gl~~e 626 (996)
.|.... ..+...| ++++|+|+.|....+..+..++. .+.|+++|+||+|+... +.+++..++. ..++.
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~-- 132 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR-- 132 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC--
Confidence 455543 3344445 99999999985444333332222 37899999999999532 2333333322 22221
Q ss_pred CCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 627 DWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 627 ~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
...++.+||++|.|+++|++.|..
T Consensus 133 ----~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 133 ----PVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred ----cCcEEEEECCCCCCHHHHHHHHHH
Confidence 125899999999999999999854
No 408
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.22 E-value=0.0075 Score=73.81 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=112.2
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC--EEEEecC-CC-Ch--------hHHhHHHh
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFNV-KA-PG--------SVKTYADN 850 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIl~Fnv-~~-~~--------~~~~~A~~ 850 (996)
-|+-|--.-+...+..+..-++-+=|+.+.-| +-|..-+.++...+- +|+.+|= .. +. +++++.+.
T Consensus 56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~ 135 (614)
T PRK10512 56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE 135 (614)
T ss_pred EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 47777655556666666666666666665544 333334444444432 4566663 22 21 12222222
Q ss_pred cC---ceEEEec-----hHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEee
Q 001915 851 KG---VEIRLYR-----VIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIR 921 (996)
Q Consensus 851 ~~---V~I~~~~-----IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR 921 (996)
.+ +.|+.-+ -|.+|++.+ ..+..+.....---+.-|-.+|+. +.|+|..-.|.+|+|+.|..+.+.-
T Consensus 136 ~~~~~~~ii~VSA~tG~gI~~L~~~L----~~~~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p 211 (614)
T PRK10512 136 YGFAEAKLFVTAATEGRGIDALREHL----LQLPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG 211 (614)
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHH----HHhhccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcC
Confidence 22 4454332 344454444 444444322211124557789985 6899999999999999999998875
Q ss_pred CCEEEEEEEEeeeecccccccccccCceeEEEEcc---CCCCCCCCEEE
Q 001915 922 DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD---YDDLEEGDIIE 967 (996)
Q Consensus 922 ~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~---f~d~~~GD~ie 967 (996)
.|. ..+|.||+.+..+|.++.+|+-|||.+.+ ..+++.||+|-
T Consensus 212 ~~~---~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 212 VNK---PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred CCC---cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 553 46899999999999999999999999975 35899999984
No 409
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.13 E-value=0.0015 Score=65.79 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=37.4
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
++.+.|+||||.... ....+..+|.+|+|...+. ...+..+ .......--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~---~D~y~~~-k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGA---GDDIQAI-KAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCc---hhHHHHh-hhhHhhhcCEEEEeCCC
Confidence 568999999995432 2347789999999987651 1112111 22223344689999998
No 410
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.11 E-value=0.012 Score=69.34 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=124.5
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC---------cCChhhHHHHHhcC--CEEEEec-CCC-C----------
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASK--AIILGFN-VKA-P---------- 841 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~--aiIl~Fn-v~~-~---------- 841 (996)
-|+-|..+-+.+.+..+..-++-+=|+.+.-| +-|..-+.+|...+ .+|++.| +.. .
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~ 169 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDE 169 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHH
Confidence 57888888788888888777888878887766 35666677776655 3677777 331 1
Q ss_pred --hhHHhHHHhcC-----ceEEEech-----HhHH--------HHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCce
Q 001915 842 --GSVKTYADNKG-----VEIRLYRV-----IYDL--------IDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGR 900 (996)
Q Consensus 842 --~~~~~~A~~~~-----V~I~~~~I-----IY~L--------iddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~ 900 (996)
.+++++.++.| +.|+.-+- |.+. -..+.+++..+..|.....---+.-|..+|+. +.|.
T Consensus 170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred HHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceE
Confidence 12222222223 44443331 1110 01244445554444433222235667899985 5789
Q ss_pred EEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 901 VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 901 IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
|+..+|..|.|+.|..+.++-.+. ..+|.||+.+++++.++.+|+-|||.|.+. .+++.||+|-.
T Consensus 250 vv~G~V~~G~l~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 250 VPVGRVETGILKPGMVVTFAPSGV---TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred EEEEEEEcceEecCCEEEEccCCc---EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 999999999999999999998774 478999999999999999999999999985 48999999854
No 411
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.08 E-value=0.004 Score=74.30 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
++-..+-++|..++|||.||+.+.+..+.....+.+........+.. .+....+.+-|.+-. ....+.... ..||+
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~--~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV--KGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee--ccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 44457889999999999999999987766533332222222222332 255556777776643 222222222 78999
Q ss_pred EEEEEecCCCCChhHHHH-H-HHHHHcCCCEEEEecccCCCCCChh---HHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 569 AVIVVAADDGIRPQTNEA-I-AHAKAAGVPIVIAINKIDKDGANPE---RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~-I-~~ak~~~IPIIVVINKiDL~~a~~e---rv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
++++||.++......... . .+.....+|+++|..|+|+.....+ .-.....++++ .+-+.+|.++..
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i--------~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL--------PPPIHISSKTLS 570 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCC--------CCCeeeccCCCC
Confidence 999999996544433222 1 1222367999999999999543210 01112222333 234556666422
Q ss_pred ChhhHHHHHHHHHH
Q 001915 644 KVDDLLETIMLVAE 657 (996)
Q Consensus 644 GIdEL~eaIl~lae 657 (996)
. .++|..|...+.
T Consensus 571 s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 571 S-NELFIKLATMAQ 583 (625)
T ss_pred C-chHHHHHHHhhh
Confidence 2 788988876654
No 412
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.07 E-value=0.00055 Score=74.33 Aligned_cols=55 Identities=18% Similarity=0.374 Sum_probs=36.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-cccc-------CCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA-------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~-------gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
..++++|++|+|||||+|+|...... .++. ..+|++...+. +.+ ..++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~----l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFH----FHG----GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEE----cCC----cEEEeCCCccc
Confidence 47899999999999999999865322 1211 23666643333 222 38999999543
No 413
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.06 E-value=0.0021 Score=59.05 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=64.1
Q ss_pred EEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCE
Q 001915 889 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDI 965 (996)
Q Consensus 889 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ 965 (996)
-|..+|+. ..|.|.-.+|..|.++.|..++++--+. -...+|.||..+++++.++.+|+.|||.|.+. .+++.||+
T Consensus 4 ~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG~v 82 (87)
T cd03697 4 PIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERGMV 82 (87)
T ss_pred eEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCccE
Confidence 45688884 5677777799999999999998874221 14688999999999999999999999999975 58999998
Q ss_pred E
Q 001915 966 I 966 (996)
Q Consensus 966 i 966 (996)
|
T Consensus 83 l 83 (87)
T cd03697 83 L 83 (87)
T ss_pred E
Confidence 7
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0089 Score=71.13 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-cc--ccCCceeee------------------ceEEEEEe-------eCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AA--EAGGITQGI------------------GAYKVQVP-------VDGK 540 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~s--e~gGiTqdI------------------~a~~V~i~-------idgk 540 (996)
.++.+++++|..|+||||++..|...... .+ ...-++.|. ..+..... .+-.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 45679999999999999999988632110 00 001111111 00000000 0112
Q ss_pred cccEEEEeCCCccchHHHH-H--Hhhhc---CCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 541 LQPCVFLDTPGHEAFGAMR-A--RGARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr-~--rga~~---ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
++.+.++||+|........ . ..+.. .+-.+||+|++-+. ....+.+......++ --+++||+|-. ...-.+
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~-~g~IlTKlDet-~~~G~~ 410 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGL-AGCILTKLDEA-ASLGGA 410 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCC-CEEEEeCCCCc-ccchHH
Confidence 3568999999943222111 1 11111 23378999987533 112223333333332 34568999963 234445
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCCh-hhH
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGI-dEL 648 (996)
...+...+ .|+.+++ +|++| ++|
T Consensus 411 l~i~~~~~---------lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 411 LDVVIRYK---------LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred HHHHHHHC---------CCeEEEe--cCCCChhhh
Confidence 55555543 4555554 67888 554
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0048 Score=62.55 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=38.6
Q ss_pred cccEEEEeCCCccchHH----HHHHh--hhcCCeEEEEEecCCCCChhHHHHHHH-HHHcCCCEEEEecccCCCC
Q 001915 541 LQPCVFLDTPGHEAFGA----MRARG--ARVTDIAVIVVAADDGIRPQTNEAIAH-AKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~----mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~-ak~~~IPIIVVINKiDL~~ 608 (996)
++.+.|+||||...+.. ..... ....|.++||+|+..+ ....+.+.. ....++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 45689999999743321 11111 1348999999998643 223333333 333443 567779999743
No 416
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.99 E-value=0.024 Score=66.17 Aligned_cols=183 Identities=20% Similarity=0.161 Sum_probs=113.4
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---CChhhHHHHHhcC--CEEEEec-CCCCh---------hHHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFN-VKAPG---------SVKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIl~Fn-v~~~~---------~~~~~A~ 849 (996)
-|+-|..+-+.+++..+..-++-+-++.+.-|. -+...+.++...+ .+|+.+| +.... .++.+++
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~ 169 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVK 169 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhc
Confidence 488898777777777776667777777776543 2333444444443 3677777 22211 1122222
Q ss_pred h---cCceEEEechHh-HHHHHHHHHHHccccccee-eeeEEeEEEEEEeecC---------CceEEEEEEeeceEeeCC
Q 001915 850 N---KGVEIRLYRVIY-DLIDDMRNAMEGLLETVEE-QVPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 915 (996)
Q Consensus 850 ~---~~V~I~~~~IIY-~Liddik~~~~~~l~~~~~-e~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 915 (996)
. .++.++.-+-.. +=++++.++|...+++..+ ..---+.-|..+|..+ .|.|..-+|..|.++.|.
T Consensus 170 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd 249 (411)
T PRK04000 170 GTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGD 249 (411)
T ss_pred cccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCC
Confidence 1 245555443211 1134444455554443221 1112245677888532 355777799999999999
Q ss_pred cEEEeeCCE------EEE---EEEEeeeecccccccccccCceeEEEEc---c--CCCCCCCCEEE
Q 001915 916 GIRVIRDGK------TVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---D--YDDLEEGDIIE 967 (996)
Q Consensus 916 ~vrviR~g~------vi~---~G~I~SLk~~k~dV~ev~~G~ECGI~i~---~--f~d~~~GD~ie 967 (996)
.+.++-.+. -.| ..+|.||+.+.+++.++.+|+-|||.+. + -.|++.||+|-
T Consensus 250 ~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 250 EIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred EEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 999986543 122 4689999999999999999999999985 2 25788898873
No 417
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=96.97 E-value=0.029 Score=66.60 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=116.7
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC---cCChhhHHHHHhcC--CEEEEecC-CCC-hh-H-------HhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---DISASDVDLAVASK--AIILGFNV-KAP-GS-V-------KTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---~ItesDV~lA~as~--aiIl~Fnv-~~~-~~-~-------~~~A~ 849 (996)
-|+-|--.-+.+.+..+..-+.-+=|+.+.-| +-|...+.+|...+ -+|+.+|= ... .+ + +++.+
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~ 201 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK 201 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 57777766677777777766776767777543 33455555555444 36777773 221 11 1 11111
Q ss_pred h---cCceEEEechHhH-HHHHHHHHHHcccccceee-eeEEeEEEEEEeecC---------CceEEEEEEeeceEeeCC
Q 001915 850 N---KGVEIRLYRVIYD-LIDDMRNAMEGLLETVEEQ-VPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 915 (996)
Q Consensus 850 ~---~~V~I~~~~IIY~-Liddik~~~~~~l~~~~~e-~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 915 (996)
. .++.|+.-+-... =++.+.++|.+.+++..+. .---+.-|-.+|... .|.|+..+|.+|.|+.|.
T Consensus 202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd 281 (460)
T PTZ00327 202 GTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGD 281 (460)
T ss_pred hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCC
Confidence 1 2455555442221 1466666676656543322 111234566778643 588999999999999999
Q ss_pred cEEEee-------CCEEEE---EEEEeeeecccccccccccCceeEEEEc---cC--CCCCCCCEEE
Q 001915 916 GIRVIR-------DGKTVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---DY--DDLEEGDIIE 967 (996)
Q Consensus 916 ~vrviR-------~g~vi~---~G~I~SLk~~k~dV~ev~~G~ECGI~i~---~f--~d~~~GD~ie 967 (996)
.+.+.- +|+..+ ..+|.||+.+..+|.++.+|+-|||.+. +. .|++-||+|-
T Consensus 282 ~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~ 348 (460)
T PTZ00327 282 EIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLG 348 (460)
T ss_pred EEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEE
Confidence 998874 344322 4799999999999999999999999886 32 4788898874
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=96.92 E-value=0.013 Score=68.89 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=49.4
Q ss_pred cccEEEEeCCCccch----HHHHHH--hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhH
Q 001915 541 LQPCVFLDTPGHEAF----GAMRAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER 613 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F----~~mr~r--ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~er 613 (996)
.+.+.|+||||.-.+ ...... .+-..|-++||+|+..+ ....+.+..... .++ .-+++||+|-.. ..-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~-rgG~ 258 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDA-RGGA 258 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-cccH
Confidence 467999999994322 111111 12356888999998642 222333333332 343 356779999521 1222
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
+.......+ .|+.+++. |+++++|.
T Consensus 259 alsi~~~~~---------~PI~fig~--Ge~v~DLe 283 (433)
T PRK10867 259 ALSIRAVTG---------KPIKFIGT--GEKLDDLE 283 (433)
T ss_pred HHHHHHHHC---------cCEEEEeC--CCccccCc
Confidence 333333332 46666543 67775553
No 419
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.87 E-value=0.011 Score=69.77 Aligned_cols=134 Identities=21% Similarity=0.364 Sum_probs=86.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-cc---------------------------------------------
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AE--------------------------------------------- 520 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~-se--------------------------------------------- 520 (996)
+...-|+|+++|+-.+||||.|..+...++.. +.
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 34566899999999999999999886543321 00
Q ss_pred --------cCCceeeeceEEEEEeeCC-ccccEEEEeCCCc-------------cchHHHHHHhhhcCCeEEEEEecCCC
Q 001915 521 --------AGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGH-------------EAFGAMRARGARVTDIAVIVVAADDG 578 (996)
Q Consensus 521 --------~gGiTqdI~a~~V~i~idg-k~~~ItfIDTPGh-------------E~F~~mr~rga~~ADiVILVVDAsdg 578 (996)
.+|.|... ..+.+.+.| .-.++.++|.||. +....|...++.+.+++|||+- ||
T Consensus 384 E~RMr~sVr~GkTVSn--EvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DG 459 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSP--ETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DG 459 (980)
T ss_pred HHHHHhcccCCccccc--ceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cC
Confidence 01222111 112222222 2346899999992 4456677788899999999984 33
Q ss_pred CChhH----HHHHHHHHHcCCCEEEEecccCCCC---CChhHHHHHHHhcCCC
Q 001915 579 IRPQT----NEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLM 624 (996)
Q Consensus 579 v~~Qt----~E~I~~ak~~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~ 624 (996)
.-... ......+.-.+...|+|++|.|+.+ ++++++.+.+...-|.
T Consensus 460 SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 460 SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 22222 2333444446777999999999954 5788988888765443
No 420
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.83 E-value=0.0025 Score=67.22 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=53.2
Q ss_pred cccEEEEeCCCccchHH----HHHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 541 LQPCVFLDTPGHEAFGA----MRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~----mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
++.+.|+||||...+.. .+... ....+-++||++++.+... ...........++. =++++|.|-.. ..-.+
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~-~lIlTKlDet~-~~G~~ 159 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGID-GLILTKLDETA-RLGAL 159 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTC-EEEEESTTSSS-TTHHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCc-eEEEEeecCCC-Ccccc
Confidence 35799999999544322 11111 2357889999999875322 22333333434444 44599999732 34445
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
...+...+ .|+-.+| +|++|++|
T Consensus 160 l~~~~~~~---------~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 160 LSLAYESG---------LPISYIT--TGQRVDDL 182 (196)
T ss_dssp HHHHHHHT---------SEEEEEE--SSSSTTGE
T ss_pred eeHHHHhC---------CCeEEEE--CCCChhcC
Confidence 55555544 3555554 56777554
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.80 E-value=0.021 Score=67.18 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=36.7
Q ss_pred cccEEEEeCCCccchHH----HHH--HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCC
Q 001915 541 LQPCVFLDTPGHEAFGA----MRA--RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~----mr~--rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL 606 (996)
.+.+.|+||||.-.+.. ... ...-..|.++||+|+..+ ....+.+..... .++ .=+++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 45799999999432211 111 112457889999998743 233333333331 233 3566999995
No 422
>PRK13695 putative NTPase; Provisional
Probab=96.75 E-value=0.016 Score=59.05 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=46.6
Q ss_pred hcCCeEEEEEe---cCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 564 RVTDIAVIVVA---ADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 564 ~~ADiVILVVD---Asdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
..+|+ +++| ..+....+..+.+..+...+.|+|++.||... ......+..+ .+..++.+
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-----~~~~~~i~~~--------~~~~i~~~--- 156 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-----HPFVQEIKSR--------PGGRVYEL--- 156 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-----HHHHHHHhcc--------CCcEEEEE---
Confidence 56676 6788 55666677788888877889999999998543 1222222221 12345655
Q ss_pred CCCChhhHHHHHHH
Q 001915 641 KGEKVDDLLETIML 654 (996)
Q Consensus 641 tGeGIdEL~eaIl~ 654 (996)
+.+|=+++...|+.
T Consensus 157 ~~~~r~~~~~~~~~ 170 (174)
T PRK13695 157 TPENRDSLPFEILN 170 (174)
T ss_pred cchhhhhHHHHHHH
Confidence 55666677777653
No 423
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.75 E-value=0.00092 Score=78.59 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=44.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCC-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
..|++||-||+||||+||+|.+.+ +.++..+|-|.|+..+.+. -.+.+.||||-
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------~~v~LCDCPGL 369 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------PSVCLCDCPGL 369 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------CCceecCCCCc
Confidence 579999999999999999999876 4588889999986554433 14899999994
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.028 Score=70.16 Aligned_cols=146 Identities=23% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-cc--ccCCc---eeeece----------EEEEEe--e----------CCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AA--EAGGI---TQGIGA----------YKVQVP--V----------DGKL 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~s--e~gGi---TqdI~a----------~~V~i~--i----------dgk~ 541 (996)
++.+|+|+|..|+||||++..|...... .+ ...-+ |..+++ ..+.+. . ....
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4568999999999999999988632210 00 00001 111100 000000 0 1134
Q ss_pred ccEEEEeCCCccc----hHHHHHH--hhhcCCeEEEEEecCCCCChhHH-HHHHHHHHc-CC-CEEEEecccCCCCCChh
Q 001915 542 QPCVFLDTPGHEA----FGAMRAR--GARVTDIAVIVVAADDGIRPQTN-EAIAHAKAA-GV-PIVIAINKIDKDGANPE 612 (996)
Q Consensus 542 ~~ItfIDTPGhE~----F~~mr~r--ga~~ADiVILVVDAsdgv~~Qt~-E~I~~ak~~-~I-PIIVVINKiDL~~a~~e 612 (996)
+.+.||||||... ....... .....+-++||+|++-. .++. +.+...... .. +-=++++|.|-.. ..-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~-~~G 340 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT-HLG 340 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC-Ccc
Confidence 5799999999322 1111111 12345678999998742 2222 233333321 11 2346799999632 334
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh-hhHH
Q 001915 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (996)
Q Consensus 613 rv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI-dEL~ 649 (996)
.+.......+ .|+.+++ +|++| ++|.
T Consensus 341 ~iL~i~~~~~---------lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 341 PALDTVIRHR---------LPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHHC---------CCeEEEe--cCCCChhhcc
Confidence 4555554443 4565554 67888 5553
No 425
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.70 E-value=0.0039 Score=81.35 Aligned_cols=108 Identities=24% Similarity=0.296 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccc--------cCCceeeeceEEEEEeeCCccccEEEEeCCC----cc----c
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HE----A 554 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se--------~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----hE----~ 554 (996)
-|=..|||.+|+||||||... +-.+...+ ..+-|+++..+. . ....++||+| ++ .
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-----~---~~avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-----T---DEAVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-----c---CCEEEEcCCCccccCCCcccc
Confidence 366899999999999999876 22232211 012233332221 1 1467999999 21 1
Q ss_pred hHHHHHHh---------hhcCCeEEEEEecCCCCC--hhH--------HHHHHHHH---HcCCCEEEEecccCCC
Q 001915 555 FGAMRARG---------ARVTDIAVIVVAADDGIR--PQT--------NEAIAHAK---AAGVPIVIAINKIDKD 607 (996)
Q Consensus 555 F~~mr~rg---------a~~ADiVILVVDAsdgv~--~Qt--------~E~I~~ak---~~~IPIIVVINKiDL~ 607 (996)
....+... -+-.|+||++||+.+-+. +.. +..+..+. ...+|+.|+++|||+.
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 22222221 244799999999986332 111 11111111 2468999999999984
No 426
>PRK00098 GTPase RsgA; Reviewed
Probab=96.70 E-value=0.002 Score=71.81 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccC-------CceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAG-------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~g-------GiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
...++++|++|+|||||+|+|.+.... .++.. .+|++...+. ..+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~----~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD----LPG---GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE----cCC---CcEEEECCCcCc
Confidence 457999999999999999999865432 22221 2454432222 222 258999999643
No 427
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.68 E-value=0.0031 Score=70.04 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-cccc-------CCceeeeceEEEEEeeCCccccEEEEeCCCccch
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA-------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~-------gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F 555 (996)
..++++|++|+|||||+|.|.+.... .++. ..+|++.. .+...+ ...++||||...|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~----~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE----LFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE----EEEcCC---CCEEEECCCCCcc
Confidence 68999999999999999999865432 1111 12444432 222222 2379999997655
No 428
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.049 Score=56.49 Aligned_cols=141 Identities=23% Similarity=0.302 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCC-C-----------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP-G----------------- 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTP-G----------------- 551 (996)
-..+|.|.|.||+|||||+.++...-... |.+. -+++..++.-+++..-|.++|.. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~----g~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK----GYKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc----Ccee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 45789999999999999998876321110 0011 12333333334555556666665 3
Q ss_pred ----ccchH----HHHHHhhhcCCeEEEEEecCCCCC----hhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHH
Q 001915 552 ----HEAFG----AMRARGARVTDIAVIVVAADDGIR----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS 619 (996)
Q Consensus 552 ----hE~F~----~mr~rga~~ADiVILVVDAsdgv~----~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~ 619 (996)
.+.+. ....+.+..||++|+ |=- |.| ....+.+..+...+.|+|.++.+-+. +.+.+.+.
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvIII--DEI-GpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~ik 150 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVIII--DEI-GPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRIK 150 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecc-cchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHhh
Confidence 01121 223344456787664 421 222 33355666666678999998887764 33444444
Q ss_pred hcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 620 SIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 620 ~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+- + ++. .+-.|=+.++..|+.+
T Consensus 151 ~~~~--------v-~v~---lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 151 KLGG--------V-YVF---LTPENRNRILNEILSV 174 (179)
T ss_pred hcCC--------E-EEE---EccchhhHHHHHHHHH
Confidence 4321 1 222 5666666888777644
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.048 Score=64.15 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc--cc-cccCCceee------------------eceEEEEEe------e-CCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV--AA-AEAGGITQG------------------IGAYKVQVP------V-DGKL 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v--a~-se~gGiTqd------------------I~a~~V~i~------i-dgk~ 541 (996)
...+++|+|+.|+||||++-.|..... .. ....-++.| +.++..... + ....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 356899999999999998877642111 00 000001111 111110000 0 0124
Q ss_pred ccEEEEeCCCccchH----HHHHHhhh---cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 542 QPCVFLDTPGHEAFG----AMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~----~mr~rga~---~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
+.+.|+||||...+. ......+. ..+-++||++++-+. ....+.+..+...++ -=++++|+|-. ...-.+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet-~~~G~i 376 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET-SSLGSI 376 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc-ccccHH
Confidence 679999999964332 11112222 234678888876421 122333344443232 35889999973 234455
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCCh-hhH
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGI-dEL 648 (996)
...+...+ .|+..++ +|++| ++|
T Consensus 377 ~~~~~~~~---------lPv~yit--~Gq~VpdDl 400 (424)
T PRK05703 377 LSLLIESG---------LPISYLT--NGQRVPDDI 400 (424)
T ss_pred HHHHHHHC---------CCEEEEe--CCCCChhhh
Confidence 56555554 3555554 67776 444
No 430
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.024 Score=66.08 Aligned_cols=145 Identities=18% Similarity=0.252 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Ccc--ccc---cCCc--------eeeeceEEEEEe------e---C-C
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA--AAE---AGGI--------TQGIGAYKVQVP------V---D-G 539 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va--~se---~gGi--------TqdI~a~~V~i~------i---d-g 539 (996)
.++.+|+|+|..|+||||++..|... ++. ..+ .+.+ ..++.++..... + . .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 45679999999999999999988521 111 000 0000 011111111000 0 0 1
Q ss_pred ccccEEEEeCCCccchHH----HHHHhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhH
Q 001915 540 KLQPCVFLDTPGHEAFGA----MRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~----mr~rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~er 613 (996)
.++.+.|+||||...... .....+ ...|.++||+|++-.- ....+.+......++ -=++++|+|-.. ..-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 135799999999533221 122222 3467889999886321 122444444443222 356789999643 3344
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
+...+...+ .|+..++ +|++|.+
T Consensus 396 iLni~~~~~---------lPIsyit--~GQ~VPe 418 (436)
T PRK11889 396 LLKIPAVSS---------APIVLMT--DGQDVKK 418 (436)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCc
Confidence 455444443 3555544 5677765
No 431
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.56 E-value=0.082 Score=64.54 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=118.1
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEEcccCcC--ChhhHHHHHhcC-C-EEEEec-CCC-Chh--------HHhHHH
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDI--SASDVDLAVASK-A-IILGFN-VKA-PGS--------VKTYAD 849 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~I--tesDV~lA~as~-a-iIl~Fn-v~~-~~~--------~~~~A~ 849 (996)
=-|+-|.-.-+...+..+.+-++-+-|+.+.-|.. |..-+..+...+ - +|+.+| +.. +.+ ++++++
T Consensus 54 ~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~ 133 (581)
T TIGR00475 54 FIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILN 133 (581)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 34777876666666766666677777777766532 333333343333 2 677777 221 222 223333
Q ss_pred hc----CceEEEec-----hHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEE
Q 001915 850 NK----GVEIRLYR-----VIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRV 919 (996)
Q Consensus 850 ~~----~V~I~~~~-----IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrv 919 (996)
.. ++.|+.-+ -|-+|.+.+...+..+-.+. .+ ---..-|-.+|+. +.|.|+.-.|.+|+|+.|..+.+
T Consensus 134 ~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~-~~-~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i 211 (581)
T TIGR00475 134 SYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR-IQ-KPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRL 211 (581)
T ss_pred HhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC-cC-CCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEE
Confidence 32 45665544 45566666666665543321 11 1234557789984 67999999999999999999998
Q ss_pred eeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEE
Q 001915 920 IRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDII 966 (996)
Q Consensus 920 iR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~i 966 (996)
.-.|. ..+|.||+.+.++|.++.+|+-|||.+.+.+ +++-|..+
T Consensus 212 ~P~~~---~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~ 257 (581)
T TIGR00475 212 LPINH---EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLI 257 (581)
T ss_pred CCCCc---eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEE
Confidence 87664 5789999999999999999999999998754 78889544
No 432
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.53 E-value=0.099 Score=60.97 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=111.8
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC--CEEEEecC-CC---ChhH----H----hHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFNV-KA---PGSV----K----TYA 848 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIl~Fnv-~~---~~~~----~----~~A 848 (996)
-|+-|...-+.+.+..+..-++-+=|+.+.-| +-|+....++...+ .+|+.+|= .. +.+. + ++.
T Consensus 85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~ 164 (406)
T TIGR02034 85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFA 164 (406)
T ss_pred EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHH
Confidence 68888766666666667677788888887655 44555566666543 46777773 21 1211 1 112
Q ss_pred HhcC---ceEEEech-----HhHH--------HHHHHHHHHcccccceeeeeEEeEEEEEEeecC-CceEEEEEEeeceE
Q 001915 849 DNKG---VEIRLYRV-----IYDL--------IDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG-SGRVAGCMVSEGKL 911 (996)
Q Consensus 849 ~~~~---V~I~~~~I-----IY~L--------iddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~-~g~IaGc~V~~G~i 911 (996)
++.+ +.|+.-+- |..+ ..-+.++|..+-.|.....---+.-|..+|+.. .+.-.|-+|..|.|
T Consensus 165 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l 244 (406)
T TIGR02034 165 EQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSV 244 (406)
T ss_pred HHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEeccee
Confidence 2222 23433221 1110 011333444433333222111234455777642 22225568999999
Q ss_pred eeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 912 VKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 912 ~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
+.|..+.++-.|. ..+|.||+.++.+|+++.+|+-|||.+.+..+++.||+|-.
T Consensus 245 ~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~ 298 (406)
T TIGR02034 245 HVGDEVVVLPSGR---SSRVARIVTFDGDLEQARAGQAVTLTLDDEIDISRGDLLAA 298 (406)
T ss_pred ecCCEEEEeCCCc---EEEEEEEEECCcccCEeCCCCEEEEEECCccccCCccEEEc
Confidence 9999998887663 58999999999999999999999999998889999998843
No 433
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.52 E-value=0.078 Score=61.78 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=108.1
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---CChhhHHHHHhcC--CEEEEecC-CCC-hh--------HHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFNV-KAP-GS--------VKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIl~Fnv-~~~-~~--------~~~~A~ 849 (996)
-|+-|.-+-+...+..+..-++-+=|+.+.-|. -+..-+.++...+ .+|+.+|= ... .+ +.++.+
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~ 164 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK 164 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh
Confidence 677787666666666665556667677776543 2333344444443 36666662 221 11 111222
Q ss_pred h---cCceEEEechHh-HHHHHHHHHHHcccccce-eeeeEEeEEEEEEeecC---------CceEEEEEEeeceEeeCC
Q 001915 850 N---KGVEIRLYRVIY-DLIDDMRNAMEGLLETVE-EQVPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 915 (996)
Q Consensus 850 ~---~~V~I~~~~IIY-~Liddik~~~~~~l~~~~-~e~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 915 (996)
. .++.++.-+-.. +=++++.++|...+++.. ...---+.-|..+|..+ .|.|..-+|.+|.|+.|.
T Consensus 165 ~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd 244 (406)
T TIGR03680 165 GTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGD 244 (406)
T ss_pred hcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCC
Confidence 1 144554332110 113444555555444221 11112345577888532 356777799999999999
Q ss_pred cEEEeeCCEE------EE---EEEEeeeecccccccccccCceeEEEEc---c--CCCCCCCCEE
Q 001915 916 GIRVIRDGKT------VH---VGVLDSLRRVKENVKEVNAGLECGVGAA---D--YDDLEEGDII 966 (996)
Q Consensus 916 ~vrviR~g~v------i~---~G~I~SLk~~k~dV~ev~~G~ECGI~i~---~--f~d~~~GD~i 966 (996)
.+.+.-.+.. .| ..+|.||+.+..++.++.+|+-|||.+. + -.|+..||+|
T Consensus 245 ~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl 309 (406)
T TIGR03680 245 EIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVV 309 (406)
T ss_pred EEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEE
Confidence 9998754321 11 3589999999999999999999999984 2 2578888875
No 434
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.47 E-value=0.03 Score=63.40 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC----cc--ccccCCceeee------ceEEEEEe-------eCC-----------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----VA--AAEAGGITQGI------GAYKVQVP-------VDG----------- 539 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~----va--~se~gGiTqdI------~a~~V~i~-------idg----------- 539 (996)
+-|+..|.|--|+||||||++|+... ++ ..+.+.+..|- ....+++. ..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 56889999999999999999997431 11 22332221110 00011110 000
Q ss_pred ------ccccEEEEeCCCccchHHHHHHhh--------hcCCeEEEEEecCCCCChh--HHHHHHHHHHcCCCEEEEecc
Q 001915 540 ------KLQPCVFLDTPGHEAFGAMRARGA--------RVTDIAVIVVAADDGIRPQ--TNEAIAHAKAAGVPIVIAINK 603 (996)
Q Consensus 540 ------k~~~ItfIDTPGhE~F~~mr~rga--------~~ADiVILVVDAsdgv~~Q--t~E~I~~ak~~~IPIIVVINK 603 (996)
......++.|.|...-..+..... -.-|.+|.|+|+....... ......++.. .=+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEec
Confidence 125678999999765443332221 2348899999997632211 1112222322 34889999
Q ss_pred cCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 604 IDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 604 iDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
+|+... .+++...+...+ ...+++.++
T Consensus 160 ~Dl~~~-~~~~~~~l~~ln-------p~a~i~~~~ 186 (318)
T PRK11537 160 TDVAGE-AEKLRERLARIN-------ARAPVYTVV 186 (318)
T ss_pred cccCCH-HHHHHHHHHHhC-------CCCEEEEec
Confidence 999653 355555555532 245666543
No 435
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.44 E-value=0.0032 Score=74.44 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=99.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+++|+|...+|||+|+.+++...+...+.+. -+.|..++..++..+.+.+.|-.|+.. ..+....|++|+
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e----~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPE----GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCc----CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 48999999999999999998866665433221 123455566678888889999988643 345678899999
Q ss_pred EEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCCCCh------hHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 572 VVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGANP------ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~a~~------erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
||...+..++|..+.+.+-. ...+|+++++.+- ...+.. .+....+... ..+.+|+.+|.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~--------krcsy~et~at 172 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQM--------KRCSYYETCAT 172 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccccccchHHHHHHHHhc--------Cccceeecchh
Confidence 99999988888877664432 2346677776653 322221 1122222221 24679999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.+++..|..+...
T Consensus 173 yGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQK 187 (749)
T ss_pred hhhhHHHHHHHHHHH
Confidence 999999998876543
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.38 E-value=0.017 Score=58.73 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=57.5
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHH
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS 619 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~ 619 (996)
..+.+.|+|||+.... .....+..+|.+++++..+..........++.++..+.|+.+++||+|........+.+.+.
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~ 168 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCE 168 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 3567999999975332 23345688999999999886555556667777777889999999999975433444555555
Q ss_pred hcC
Q 001915 620 SIG 622 (996)
Q Consensus 620 ~~g 622 (996)
.++
T Consensus 169 ~~~ 171 (179)
T cd03110 169 EEG 171 (179)
T ss_pred HcC
Confidence 444
No 437
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.32 E-value=0.11 Score=63.80 Aligned_cols=178 Identities=21% Similarity=0.195 Sum_probs=105.9
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC-EEEEecCCCCh---h----HHhHHHhcCce
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA-IILGFNVKAPG---S----VKTYADNKGVE 854 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a-iIl~Fnv~~~~---~----~~~~A~~~~V~ 854 (996)
-|+-|..+-.......+..-+.-+-|+.+.-| .-|...+.++...+- +|+..| +.+- . ..++++..+..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViN-KiDl~~~~~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVIN-KIDLPSADPERVKKEIEEVIGLD 153 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEE-CcCCCccCHHHHHHHHHHHhCCC
Confidence 57777766554444455555666656655433 233334445544443 444444 3321 1 13444444542
Q ss_pred ---EE-----EechHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEE
Q 001915 855 ---IR-----LYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKT 925 (996)
Q Consensus 855 ---I~-----~~~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~v 925 (996)
++ ...-|-+|++.+.+.+ .+|.....---.|-|-.+|. ...|.|+-++|.+|+|+.|..++++..|..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~l---p~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~ 230 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRV---PPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKE 230 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhC---CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCe
Confidence 22 1233445665554433 22322221112444545554 457999999999999999999999988865
Q ss_pred EEEEEEeeeecccccccccccCceeEEEEcc---CCCCCCCCEEE
Q 001915 926 VHVGVLDSLRRVKENVKEVNAGLECGVGAAD---YDDLEEGDIIE 967 (996)
Q Consensus 926 i~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~---f~d~~~GD~ie 967 (996)
-..+.|..+.-....|.++.+|+ +|+.+.+ ..+++.||.|-
T Consensus 231 ~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~ 274 (595)
T TIGR01393 231 YEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTIT 274 (595)
T ss_pred eEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEE
Confidence 45566665544558899999999 8887764 56899999994
No 438
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.30 E-value=0.0059 Score=68.48 Aligned_cols=59 Identities=22% Similarity=0.507 Sum_probs=43.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC-----C-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-----K-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s-----~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
.-.+.|.|+|-||+|||||+|+++.. + ..++..+|+|+.+.-. +.+ . ....+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri--~-~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRI--S-HRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEe--c-cCCceEEecCCC
Confidence 35678999999999999999998632 2 2366778999887531 222 1 234699999999
No 439
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.30 E-value=0.14 Score=61.13 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=108.5
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC--CEEEEecC-CC---Chh----HH----hHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFNV-KA---PGS----VK----TYA 848 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIl~Fnv-~~---~~~----~~----~~A 848 (996)
-|+-|--.-+.+....+..-++-+=|+.+.-| +-|+....++...+ -+|+..|= .. +.+ ++ .+.
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~ 191 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFA 191 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHH
Confidence 57777544444555556566777777766544 44566666666544 45666662 21 111 11 111
Q ss_pred Hhc----CceEEEech--------------HhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeecC-CceEEEEEEeec
Q 001915 849 DNK----GVEIRLYRV--------------IYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG-SGRVAGCMVSEG 909 (996)
Q Consensus 849 ~~~----~V~I~~~~I--------------IY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~-~g~IaGc~V~~G 909 (996)
++. .+.|+..+. .|+- ..+.++++.+-.|...+.---+.-|..+|+.. .....+-+|..|
T Consensus 192 ~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G-~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG 270 (474)
T PRK05124 192 EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSG-PTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASG 270 (474)
T ss_pred HhcCCCCCceEEEEEeecCCCcccccccccccch-hhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeE
Confidence 222 244443331 1211 12333454433333222212244555665432 111134479999
Q ss_pred eEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 910 KLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 910 ~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
.|+.|..+.+.-.|. ..+|.||..+..+|.++.+|+-|+|.+.+..+++.||+|-.
T Consensus 271 ~l~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~ 326 (474)
T PRK05124 271 VVKVGDRVKVLPSGK---ESNVARIVTFDGDLEEAFAGEAITLVLEDEIDISRGDLLVA 326 (474)
T ss_pred EEecCCEEEEecCCc---eEEEEEEEEcCccccCcCCCCEEEEEeCCccccCCccEEEC
Confidence 999999999887774 57899999999999999999999999999889999999854
No 440
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.28 E-value=0.0087 Score=61.88 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=37.4
Q ss_pred CeEEEEEecCCCCChhHHHHHHH--HHHcCCCEEEEecccCCCCCChhHHHHHHH
Q 001915 567 DIAVIVVAADDGIRPQTNEAIAH--AKAAGVPIVIAINKIDKDGANPERVMQELS 619 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~I~~--ak~~~IPIIVVINKiDL~~a~~erv~~eL~ 619 (996)
|++++|+|+.++......+.... +...+.|+|+++||+|+. +.+.+..++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~--~~~~l~~~~~ 53 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV--PKENVEKWLK 53 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC--CHHHHHHHHH
Confidence 89999999998777766666665 445678999999999994 3444433333
No 441
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.0078 Score=66.49 Aligned_cols=132 Identities=19% Similarity=0.231 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCc--eeeeceEEEEEeeCCccccEEEEeCCCc----------------
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGI--TQGIGAYKVQVPVDGKLQPCVFLDTPGH---------------- 552 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGi--TqdI~a~~V~i~idgk~~~ItfIDTPGh---------------- 552 (996)
.++|..+|..|-|||||++.|.+..+...+.... +..+.+.+..+.-.+-..+++++||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4689999999999999999999988765433221 1111122222222344567999999991
Q ss_pred --cchHHH--------HH-Hhh--hcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-----hhH
Q 001915 553 --EAFGAM--------RA-RGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-----PER 613 (996)
Q Consensus 553 --E~F~~m--------r~-rga--~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-----~er 613 (996)
..|... |. ..+ ...+++++.|..+ +++..-+.-.++.+. ..+.+|-++-|.|....+ ..+
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK~eL~~FK~k 200 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISKEELKRFKIK 200 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 112111 11 122 4567888888765 344443433333333 357788889999974322 133
Q ss_pred HHHHHHhcCC
Q 001915 614 VMQELSSIGL 623 (996)
Q Consensus 614 v~~eL~~~gl 623 (996)
++.+|...++
T Consensus 201 imsEL~sngv 210 (406)
T KOG3859|consen 201 IMSELVSNGV 210 (406)
T ss_pred HHHHHHhcCc
Confidence 4555655554
No 442
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.24 E-value=0.16 Score=62.43 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=110.2
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC--CEEEEecC-CC---Chh--------HHhHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFNV-KA---PGS--------VKTYA 848 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIl~Fnv-~~---~~~--------~~~~A 848 (996)
-|+-|--+-+...+..+..-++-+=|+.+.-| +-|+....++...+ -+|+..|= .. +.+ +.++.
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~ 188 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFA 188 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHH
Confidence 67888655455555566666677777776544 44556666666554 46667762 21 121 11112
Q ss_pred HhcCc---eEEEec-----h---------HhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeecC-CceEEEEEEeece
Q 001915 849 DNKGV---EIRLYR-----V---------IYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG-SGRVAGCMVSEGK 910 (996)
Q Consensus 849 ~~~~V---~I~~~~-----I---------IY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~-~g~IaGc~V~~G~ 910 (996)
++.+. .|+..+ - .|+- ..+.+++..+..|.....---+.-|..+|+.. .....|-+|..|.
T Consensus 189 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g-~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~ 267 (632)
T PRK05506 189 AKLGLHDVTFIPISALKGDNVVTRSARMPWYEG-PSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGV 267 (632)
T ss_pred HHcCCCCccEEEEecccCCCccccccCCCcccH-hHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecce
Confidence 23232 233222 1 1211 23444555544333222111234455676532 1122345799999
Q ss_pred EeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEE
Q 001915 911 LVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIE 967 (996)
Q Consensus 911 i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie 967 (996)
|+.|..+.++-.|. ..+|.||+.+.+.|.++..|+-|||.+.+..+++.||+|-
T Consensus 268 l~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~ 321 (632)
T PRK05506 268 VRPGDEVVVLPSGK---TSRVKRIVTPDGDLDEAFAGQAVTLTLADEIDISRGDMLA 321 (632)
T ss_pred eecCCEEEEcCCCc---eEEEEEEEECCceeCEEcCCCeEEEEecCccccCCccEEe
Confidence 99999999887664 5899999999999999999999999999888999999985
No 443
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.20 E-value=0.051 Score=54.50 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=46.1
Q ss_pred cEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCC
Q 001915 543 PCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (996)
Q Consensus 543 ~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~ 608 (996)
.+.|+|||+.... .....+..+|.+|++++.+..........++.+...+.+ +.+++|++|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 6999999985433 233456899999999998765555555566666665655 678999998743
No 444
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.03 Score=65.70 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=75.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc---cccCCcee------------------eeceEEEEEe-------eCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQ------------------GIGAYKVQVP-------VDG 539 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~---se~gGiTq------------------dI~a~~V~i~-------idg 539 (996)
...+.+|+++|..|+|||||+..|....... ...+-++. ++..+.+... ..-
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l 267 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL 267 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence 3567799999999999999999775421100 00000111 1111100000 011
Q ss_pred ccccEEEEeCCCccchHH----HHHH--hhhcCCeEEEEEecCCCCChhHHH-HHHHHHHcCCCEEEEecccCCCCCChh
Q 001915 540 KLQPCVFLDTPGHEAFGA----MRAR--GARVTDIAVIVVAADDGIRPQTNE-AIAHAKAAGVPIVIAINKIDKDGANPE 612 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~----mr~r--ga~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~~~IPIIVVINKiDL~~a~~e 612 (996)
.+..+.++||+|...... .... .....+-.+||+|++- ..++.. .+......++ -=++++|.|-.. ..-
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~~~~-~~~I~TKlDEt~-~~G 343 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQGHGI-HGCIITKVDEAA-SLG 343 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcCCCC-CEEEEEeeeCCC-Ccc
Confidence 345789999999543221 1111 1123456789999874 233332 3333332222 356789999632 334
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh-hhH
Q 001915 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (996)
Q Consensus 613 rv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI-dEL 648 (996)
.+...+...+ .|+.+++ +|++| ++|
T Consensus 344 ~~l~~~~~~~---------lPi~yvt--~Gq~VP~Dl 369 (420)
T PRK14721 344 IALDAVIRRK---------LVLHYVT--NGQKVPEDL 369 (420)
T ss_pred HHHHHHHHhC---------CCEEEEE--CCCCchhhh
Confidence 4455554443 3555554 67777 444
No 445
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.01 E-value=0.18 Score=61.90 Aligned_cols=177 Identities=22% Similarity=0.251 Sum_probs=103.5
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcC-CEEEEec-CCCC-hh----HHhHHHhcCce--
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-AIILGFN-VKAP-GS----VKTYADNKGVE-- 854 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-aiIl~Fn-v~~~-~~----~~~~A~~~~V~-- 854 (996)
|+.|..+-.......+..-+.-+-|+.+.-| .-|...+.++...+ .+|+.+| +... .. ..++.+..++.
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDAS 159 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcc
Confidence 7778776654444445455566666666544 33344444554444 3555555 2221 11 12344444442
Q ss_pred -EEEe-----chHhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEe-ecCCceEEEEEEeeceEeeCCcEEEeeCCEEE
Q 001915 855 -IRLY-----RVIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTV 926 (996)
Q Consensus 855 -I~~~-----~IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF-~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi 926 (996)
++.- .-|.+|++.+. ..++ |.....---.|-|-.++ ....|.|+-++|.+|.|+.|..+.++..|..-
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~----~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~ 235 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIV----ERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEY 235 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHH----HhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceE
Confidence 3222 22445555443 3344 32221111123333333 34579999999999999999999999888755
Q ss_pred EEEEEeeeecccccccccccCceeEEEEc---cCCCCCCCCEEE
Q 001915 927 HVGVLDSLRRVKENVKEVNAGLECGVGAA---DYDDLEEGDIIE 967 (996)
Q Consensus 927 ~~G~I~SLk~~k~dV~ev~~G~ECGI~i~---~f~d~~~GD~ie 967 (996)
..++|..+......+.++.+|+ +|..+. +..+++.||.|-
T Consensus 236 ~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~ 278 (600)
T PRK05433 236 EVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTIT 278 (600)
T ss_pred EEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEE
Confidence 5566654444578899999999 776654 467899999994
No 446
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.01 E-value=0.0082 Score=61.83 Aligned_cols=126 Identities=25% Similarity=0.291 Sum_probs=63.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc-----CCcc--ccccCCceee------eceEEEEEe-------------------eCC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK-----TKVA--AAEAGGITQG------IGAYKVQVP-------------------VDG 539 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~-----s~va--~se~gGiTqd------I~a~~V~i~-------------------idg 539 (996)
|++.|.|--|+|||||++++.. .++. ..+.+.+..| .+...+.+. ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 6789999999999999999983 1211 2222211100 001111111 011
Q ss_pred c--cccEEEEeCCCccchHHH--HHH---hhhcCCeEEEEEecCCCCChhHH--HHHHHHHHcCCCEEEEecccCCCCCC
Q 001915 540 K--LQPCVFLDTPGHEAFGAM--RAR---GARVTDIAVIVVAADDGIRPQTN--EAIAHAKAAGVPIVIAINKIDKDGAN 610 (996)
Q Consensus 540 k--~~~ItfIDTPGhE~F~~m--r~r---ga~~ADiVILVVDAsdgv~~Qt~--E~I~~ak~~~IPIIVVINKiDL~~a~ 610 (996)
. ...+.|+.|.|......+ ... ..-..+.+|.|+|+..-...... ....++ ..-=+|++||+|+....
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVIVLNKIDLVSDE 157 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEEEEE-GGGHHHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEEEEeccccCChh
Confidence 2 357899999995443333 111 12345889999999653111111 111222 23348999999995422
Q ss_pred --hhHHHHHHHh
Q 001915 611 --PERVMQELSS 620 (996)
Q Consensus 611 --~erv~~eL~~ 620 (996)
.+++...+..
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 2444444444
No 447
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.072 Score=62.62 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC-------cc--ccccCC-----------ceeeeceEEEEE------eeCCcccc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-------VA--AAEAGG-----------ITQGIGAYKVQV------PVDGKLQP 543 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~-------va--~se~gG-----------iTqdI~a~~V~i------~idgk~~~ 543 (996)
++..++|+|.+|+||||++..|.... +. ..+... -..++..+.... .....++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45679999999999999999886321 11 000000 000111111100 00113567
Q ss_pred EEEEeCCCccchH----HHHHHhhh-----cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 544 CVFLDTPGHEAFG----AMRARGAR-----VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 544 ItfIDTPGhE~F~----~mr~rga~-----~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
+.|+||||..... ..+...+. ..+-.+||+|++-+.. ...+.+......++ -=++++|.|-. ...-.+
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~-~glIlTKLDEt-~~~G~i 378 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNY-RRILLTKLDEA-DFLGSF 378 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCC-CEEEEEcccCC-CCccHH
Confidence 8999999954221 11122222 2346889999876421 22333333332222 45678999963 233445
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 615 ~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
.......+ .|+..++ +|++|.+
T Consensus 379 l~i~~~~~---------lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 379 LELADTYS---------KSFTYLS--VGQEVPF 400 (432)
T ss_pred HHHHHHHC---------CCEEEEe--cCCCCCC
Confidence 55555443 3555554 5677655
No 448
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.93 E-value=0.02 Score=62.35 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=45.3
Q ss_pred ccEEEEeC-CCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcC-CCEEEEecccCC
Q 001915 542 QPCVFLDT-PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDK 606 (996)
Q Consensus 542 ~~ItfIDT-PGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~-IPIIVVINKiDL 606 (996)
..+.++|| +|.|.|+ ..-...+|.+|.|+|.+-.-......+-++....+ .++.+++||+|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 45788888 5677665 23347899999999987544444445556667788 679999999995
No 449
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.83 E-value=0.068 Score=48.45 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEeec----CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 892 AIFSS----GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 892 ~vF~~----~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk-~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
.||+. ..|.++=|+|.+|+|++|..+.+++.++....++|-.+. ..+.++.++.+|.=|+| .+.+++..||.|
T Consensus 4 ~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~~~~~Gdtl 81 (83)
T cd04092 4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL 81 (83)
T ss_pred EEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECCCCcccCCEE
Confidence 46663 358899999999999999999988877544556666664 46688999999998886 578899999988
Q ss_pred E
Q 001915 967 E 967 (996)
Q Consensus 967 e 967 (996)
-
T Consensus 82 ~ 82 (83)
T cd04092 82 V 82 (83)
T ss_pred e
Confidence 3
No 450
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=95.83 E-value=0.069 Score=48.20 Aligned_cols=74 Identities=28% Similarity=0.342 Sum_probs=59.1
Q ss_pred EEeec----CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEccCCCCCCCCEE
Q 001915 892 AIFSS----GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 892 ~vF~~----~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~-k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
.||+. ..|.++=|+|.+|+|++|..+++++.+.....++|--+.-. +.++.++.+|+=|+| .+.+++..||.|
T Consensus 4 ~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~~~~~Gdtl 81 (83)
T cd04088 4 LVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLKDTATGDTL 81 (83)
T ss_pred EEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCCCCccCCEe
Confidence 46663 46899999999999999999999987754444555555444 688999999999888 578889999987
Q ss_pred E
Q 001915 967 E 967 (996)
Q Consensus 967 e 967 (996)
-
T Consensus 82 ~ 82 (83)
T cd04088 82 C 82 (83)
T ss_pred e
Confidence 3
No 451
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.037 Score=60.43 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=84.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-----ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH---HHHHhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---MRARGA 563 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-----~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~---mr~rga 563 (996)
|+|.+||+--+||||+-.-..+..-. ......+|++ .+ .+.-+.+.+||.||+-.|-. -..+-+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d----~i----s~sfinf~v~dfPGQ~~~Fd~s~D~e~iF 99 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRD----HI----SNSFINFQVWDFPGQMDFFDPSFDYEMIF 99 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHh----hh----hhhhcceEEeecCCccccCCCccCHHHHH
Confidence 66999999999999987654432111 1111223332 11 12335689999999755321 122345
Q ss_pred hcCCeEEEEEecCCCCChhHHHH-HHHHHH----cCCCEEEEecccCCCCCC---------hhHHHHHHHhcCCCCCCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEA-IAHAKA----AGVPIVIAINKIDKDGAN---------PERVMQELSSIGLMPEDWG 629 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~-I~~ak~----~~IPIIVVINKiDL~~a~---------~erv~~eL~~~gl~~e~~g 629 (996)
+.+-+.|+|+|+.+..+...... +...+. .++.+=|.+.|.|-...+ .++...++...++..-
T Consensus 100 ~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v--- 176 (347)
T KOG3887|consen 100 RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKV--- 176 (347)
T ss_pred hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccc---
Confidence 78899999999987554433222 222222 245578999999963221 1334455555554321
Q ss_pred CCCcEEEeccCCCCChhhHHHHH
Q 001915 630 GDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 630 g~ipvVeISAktGeGIdEL~eaI 652 (996)
.+.|..+|-.. ..|-|.|..+
T Consensus 177 -~vsf~LTSIyD-HSIfEAFSkv 197 (347)
T KOG3887|consen 177 -QVSFYLTSIYD-HSIFEAFSKV 197 (347)
T ss_pred -eEEEEEeeecc-hHHHHHHHHH
Confidence 35567777654 4455555444
No 452
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.04 Score=64.00 Aligned_cols=143 Identities=13% Similarity=0.295 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Ccc--ccc---cCCce--------eeeceEEEEEe---------eC-C
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA--AAE---AGGIT--------QGIGAYKVQVP---------VD-G 539 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va--~se---~gGiT--------qdI~a~~V~i~---------id-g 539 (996)
.++.+|+|+|+.|+||||++..|... ++. ..+ .++.. .++.++...-+ .. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999887521 111 000 00000 01111111000 00 0
Q ss_pred ccccEEEEeCCCccchH----HHHHHhh--hcCCeEEEEEecCCCCChhH-HHHHHHHHHcCCC-EEEEecccCCCCCCh
Q 001915 540 KLQPCVFLDTPGHEAFG----AMRARGA--RVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~----~mr~rga--~~ADiVILVVDAsdgv~~Qt-~E~I~~ak~~~IP-IIVVINKiDL~~a~~ 611 (996)
..+.+.|+||||...+. ....... ...|.++||+++. ...+. .+.+.... .++ --++++|.|-. ...
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~--~l~i~glI~TKLDET-~~~ 358 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA--EIPIDGFIITKMDET-TRI 358 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC--cCCCCEEEEEcccCC-CCc
Confidence 24689999999963322 2222222 2447777887763 23322 22222222 233 45679999963 234
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
-.+.......+ .|+..+| +|++|.+
T Consensus 359 G~~Lsv~~~tg---------lPIsylt--~GQ~Vpd 383 (407)
T PRK12726 359 GDLYTVMQETN---------LPVLYMT--DGQNITE 383 (407)
T ss_pred cHHHHHHHHHC---------CCEEEEe--cCCCCCc
Confidence 44555554444 3555554 5677765
No 453
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.099 Score=60.92 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC----------Cccc--cc---cCCce--------eeeceEEEEEe-------eC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------KVAA--AE---AGGIT--------QGIGAYKVQVP-------VD 538 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s----------~va~--se---~gGiT--------qdI~a~~V~i~-------id 538 (996)
.++.+|+++|..|+||||.+..|... .+.. .+ .+... .++.+...... -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35678999999999999999877521 1110 00 00000 01111111100 01
Q ss_pred CccccEEEEeCCCccchHH----HHHHhhh--cCC-eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh
Q 001915 539 GKLQPCVFLDTPGHEAFGA----MRARGAR--VTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~----mr~rga~--~AD-iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~ 611 (996)
...+.+.|+||+|...... .....+. ..+ -++||+|++-+... ..+.+......+ +-=++++|.|-. ...
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~-~~~~I~TKlDet-~~~ 328 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFS-YKTVIFTKLDET-TCV 328 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeccCC-Ccc
Confidence 1356899999999533221 1122222 223 58899999875222 223333333222 345778999963 233
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh-hhHH
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI-dEL~ 649 (996)
-.+...+...+ .|+..++ +|++| ++|.
T Consensus 329 G~~l~~~~~~~---------~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 329 GNLISLIYEMR---------KEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred hHHHHHHHHHC---------CCEEEEe--CCCCChhhhh
Confidence 34444444443 3555544 67777 4443
No 454
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.77 E-value=0.0077 Score=69.34 Aligned_cols=59 Identities=22% Similarity=0.459 Sum_probs=45.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
...+..+|+|+|-||+||||++|+|...+. .++..+|+|..+. .+. .+ ..|.|+|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smq--eV~--Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQ--EVK--LD---KKIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhh--hee--cc---CCceeccCCce
Confidence 346788999999999999999999987765 4777788886542 122 22 35999999993
No 455
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=95.63 E-value=0.36 Score=59.22 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=62.7
Q ss_pred eEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeC-CEEEEEEEEeeeecc----cccccccccCceeEEEEccCCCC
Q 001915 887 SAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRD-GKTVHVGVLDSLRRV----KENVKEVNAGLECGVGAADYDDL 960 (996)
Q Consensus 887 ~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~-g~vi~~G~I~SLk~~----k~dV~ev~~G~ECGI~i~~f~d~ 960 (996)
.+.|-.+|. ...|.++-++|.+|+|+.|..+.+.+. |. ...++|.+|..+ +..|.++.+|.=|+|. +..++
T Consensus 202 ~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~-~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl~~i 278 (594)
T TIGR01394 202 QMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGT-IENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GLEDI 278 (594)
T ss_pred EEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCc-eeEEEEEEEEEccCCCceECCEECCCCEEEEe--CCccc
Confidence 344555554 357999999999999999999999874 43 345788888765 7899999999999876 78999
Q ss_pred CCCCEE
Q 001915 961 EEGDII 966 (996)
Q Consensus 961 ~~GD~i 966 (996)
..||.|
T Consensus 279 ~~Gdtl 284 (594)
T TIGR01394 279 NIGETI 284 (594)
T ss_pred CCCCEE
Confidence 999999
No 456
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.63 E-value=0.15 Score=59.78 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeec---e---EEEEEee-CCccccEE
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIG---A---YKVQVPV-DGKLQPCV 545 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~---a---~~V~i~i-dgk~~~It 545 (996)
.--.-|+++|++-+||||++.+|...-+. .....|-|+..+ + ..+.+.+ ++-..++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 34467999999999999999998532211 112223332111 0 1122222 35567899
Q ss_pred EEeCCC--------cc-----------------chHHHHHHhhh-----cC-CeEEEEEecCCC------CChhHHHHHH
Q 001915 546 FLDTPG--------HE-----------------AFGAMRARGAR-----VT-DIAVIVVAADDG------IRPQTNEAIA 588 (996)
Q Consensus 546 fIDTPG--------hE-----------------~F~~mr~rga~-----~A-DiVILVVDAsdg------v~~Qt~E~I~ 588 (996)
++||=| |+ -|......|.+ .+ =++++--|.+-+ ........+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 999987 11 13322222221 12 223333333321 1223345678
Q ss_pred HHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC--CCChhhHHHHH
Q 001915 589 HAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETI 652 (996)
Q Consensus 589 ~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt--GeGIdEL~eaI 652 (996)
.++..+.|+||++|=.+-.......+..+|... + +++++++++.. ...|..+|+.+
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ek------Y--~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEK------Y--DVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHH------h--CCcEEEeehHHcCHHHHHHHHHHH
Confidence 888999999999998875333334455555542 1 36777777643 33455555544
No 457
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.50 E-value=0.066 Score=60.93 Aligned_cols=147 Identities=23% Similarity=0.227 Sum_probs=80.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc------cccccCCceeee-ce------EEEEE-------ee-------------C
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV------AAAEAGGITQGI-GA------YKVQV-------PV-------------D 538 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v------a~se~gGiTqdI-~a------~~V~i-------~i-------------d 538 (996)
|+.+|-|-=|+||||||+.|+...- .+.+.+-+.+|- .. ..+++ .+ .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 6788999999999999999985432 234444333331 10 01111 00 0
Q ss_pred CccccEEEEeCCCccchHHHHH--------HhhhcCCeEEEEEecCCCCChhH---HHHHHHHHHcCCCEEEEecccCCC
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRA--------RGARVTDIAVIVVAADDGIRPQT---NEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~--------rga~~ADiVILVVDAsdgv~~Qt---~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
.......+|.|-|...=..... ...-.-|.+|-|||+........ .....++.. -=+|++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEecccCC
Confidence 1235678999999433222111 12234588999999987443332 222233332 348999999996
Q ss_pred CCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 608 GANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 608 ~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
+... +.+...+...+ ...+++.+|. .+....+++
T Consensus 159 ~~~~l~~l~~~l~~ln-------p~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEELEALEARLRKLN-------PRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHHHHHHHHHHHHhC-------CCCeEEEccc-cCCCHHHhh
Confidence 5432 23333344332 3467888877 333443344
No 458
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.31 Score=57.26 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=87.0
Q ss_pred EEEechHhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEe
Q 001915 855 IRLYRVIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLD 932 (996)
Q Consensus 855 I~~~~IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~ 932 (996)
+...-...+=||+++++|..+++ ++..+.-....-|-.+|+. +.|+|.=-.|.+|+++.|..+.+.--|+ +=+|.
T Consensus 140 ~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k---~v~VR 216 (447)
T COG3276 140 FKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK---EVRVR 216 (447)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC---eEEEE
Confidence 44445566778999999999885 4444444566667899995 6798888889999999999998875554 34689
Q ss_pred eeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 933 SLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 933 SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
||+.+..|++++.+|+-||+.+.+- .+++-||.|-
T Consensus 217 sIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 217 SIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred eeeecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 9999999999999999999999974 4788887764
No 459
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.42 E-value=0.12 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+-|+..|.|--|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4578999999999999999999743
No 460
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.42 E-value=0.093 Score=60.30 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC--------CCChhHHHHHHHHHH-------cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--------GIRPQTNEAIAHAKA-------AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd--------gv~~Qt~E~I~~ak~-------~~IPIIVVINKi 604 (996)
++..+.++|.+||..-..-|...+..++++|+|++.++ .......+.+.+... .+.++|+++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 45789999999998878888888999999999999985 112222344433332 467899999999
Q ss_pred CCCCC------------------ChhH----HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 605 DKDGA------------------NPER----VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 605 DL~~a------------------~~er----v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
||-.. +.+. +...+........ ..+-+..+.|..-.+|+.+|+++....
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~---k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKD---KKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccC---CcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 98311 1111 1111222111110 223355567888888888888776443
No 461
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.37 E-value=0.07 Score=60.07 Aligned_cols=84 Identities=29% Similarity=0.357 Sum_probs=54.9
Q ss_pred hcCCeEEEEEecCCC-CChhHH-HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 564 RVTDIAVIVVAADDG-IRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 564 ~~ADiVILVVDAsdg-v~~Qt~-E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
.+.|-+|+|+.+.++ +..... ..+-.+...++..||++||+||.........+.+..+. .+ .++++.+|+++
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~----~~--gy~v~~~s~~~ 151 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYE----DI--GYPVLFVSAKN 151 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHH----hC--CeeEEEecCcC
Confidence 346777777777664 343333 34556677899999999999996543332211111111 11 26899999999
Q ss_pred CCChhhHHHHHH
Q 001915 642 GEKVDDLLETIM 653 (996)
Q Consensus 642 GeGIdEL~eaIl 653 (996)
+.|+++|.+.+.
T Consensus 152 ~~~~~~l~~~l~ 163 (301)
T COG1162 152 GDGLEELAELLA 163 (301)
T ss_pred cccHHHHHHHhc
Confidence 999999998763
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.33 E-value=0.24 Score=55.18 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC------cc--cccc---CC--------ceeeeceEEEEEe---------e-CC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK------VA--AAEA---GG--------ITQGIGAYKVQVP---------V-DG 539 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~------va--~se~---gG--------iTqdI~a~~V~i~---------i-dg 539 (996)
.++.+++++|.+|+|||||+..|.... +. .... +. -..++..+...-. . ..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 356899999999999999998775321 10 0000 00 0011111110000 0 01
Q ss_pred ccccEEEEeCCCccchHH----HHHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhH
Q 001915 540 KLQPCVFLDTPGHEAFGA----MRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~----mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~er 613 (996)
..+.+.|+||||...+.. .+... ....|-++||+|++-.- .+..+.++.....++ -=++++|.|-.. ..-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~-~~~I~TKlDet~-~~G~ 229 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 229 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCC-CEEEEEeecCCC-CccH
Confidence 246899999999543211 11111 23467889999986421 122334444433222 356789999643 3334
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
+.......+ .|+..++ +|+++.+
T Consensus 230 ~l~~~~~~~---------~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 230 LLKIPAVSS---------APIVLMT--DGQDVKK 252 (270)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCc
Confidence 444444433 4555554 5777764
No 463
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.25 E-value=0.0095 Score=68.42 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=42.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
...+-|+++|-||+||||++|.|+..++. +..++|-|.-..+... -.+|.+|||||.
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-------mkrIfLIDcPGv 362 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-------MKRIFLIDCPGV 362 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-------HhceeEecCCCc
Confidence 45667999999999999999999988765 5667776643211111 236899999994
No 464
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.18 E-value=0.087 Score=48.88 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=44.4
Q ss_pred EEEEc-CCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 494 LTIMG-HVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 494 VaIVG-h~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
|+|+| ..|+||||+.-.|...-.. . +. ....+. .+. .+.+.++|||+.... .....+..+|.+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~-~~----~vl~~d--~d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~ 68 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---R-GK----RVLLID--LDP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIP 68 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---C-CC----cEEEEe--CCC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEe
Confidence 56777 6899999998776532211 1 11 111122 122 267999999996432 223566889999999
Q ss_pred EecCC
Q 001915 573 VAADD 577 (996)
Q Consensus 573 VDAsd 577 (996)
++.+.
T Consensus 69 ~~~~~ 73 (104)
T cd02042 69 VQPSP 73 (104)
T ss_pred ccCCH
Confidence 98765
No 465
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.14 E-value=0.11 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
..+|.+|.|+|-.|+||||-+-.|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHH
Confidence 4578999999999999999888774
No 466
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.12 E-value=0.052 Score=62.71 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC--------CCChhHHHHHHHHHH-------cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--------GIRPQTNEAIAHAKA-------AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd--------gv~~Qt~E~I~~ak~-------~~IPIIVVINKi 604 (996)
....+.|+|+.|+..-..-|..++...+++|+|++.++ .......+.+..... .+.|+||++||+
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 45689999999998888888889999999999999875 112223444444332 468999999999
Q ss_pred CC
Q 001915 605 DK 606 (996)
Q Consensus 605 DL 606 (996)
|+
T Consensus 314 D~ 315 (389)
T PF00503_consen 314 DL 315 (389)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 467
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.11 E-value=0.13 Score=50.92 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=59.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee--CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 495 TIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV--DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 495 aIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i--dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
..-|..|+||||+.-.+...-... +..+. .+.... ..-.+.+.++|||+... ......+..+|.++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~---~~~~~-----~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv 73 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKL---GKRVL-----LLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVV 73 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHC---CCcEE-----EEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEE
Confidence 345679999999876654221100 00010 011000 01115799999998533 3334567899999999
Q ss_pred EecCCCCChhHHHHHHHHHHc--CCCEEEEecccCC
Q 001915 573 VAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDK 606 (996)
Q Consensus 573 VDAsdgv~~Qt~E~I~~ak~~--~IPIIVVINKiDL 606 (996)
++.+..-...+...++.+... ..++.+++|+++.
T Consensus 74 ~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 74 TTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred cCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 998754434444455454332 3468899999974
No 468
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.034 Score=71.99 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=61.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcccc--------ccCCceeeeceEEEEEeeCCccccEEEEeCCC----cc----ch
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAA--------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HE----AF 555 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~s--------e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----hE----~F 555 (996)
|=-.|||.+|+||||++..-- .++... ...| |++.+-+. .-.-.+|||+| |+ .-
T Consensus 126 PWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdwwf--------~deaVlIDtaGry~~q~s~~~~~ 195 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWWF--------TDEAVLIDTAGRYITQDSADEVD 195 (1188)
T ss_pred CceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCccc--------ccceEEEcCCcceecccCcchhh
Confidence 446899999999999986432 122111 1112 44432111 12478999999 31 11
Q ss_pred HHHHH---------HhhhcCCeEEEEEecCCCCChhHHHH---HHHH----------HHcCCCEEEEecccCCC
Q 001915 556 GAMRA---------RGARVTDIAVIVVAADDGIRPQTNEA---IAHA----------KAAGVPIVIAINKIDKD 607 (996)
Q Consensus 556 ~~mr~---------rga~~ADiVILVVDAsdgv~~Qt~E~---I~~a----------k~~~IPIIVVINKiDL~ 607 (996)
...|. |..+-.|+||+.+|+.+-......+. ...+ -....|+.|++||+|+.
T Consensus 196 ~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 196 RAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 22222 23355799999999987433222222 1111 12468999999999984
No 469
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.85 E-value=0.1 Score=46.17 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=48.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH-HHHhhhcCCeEEEE
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-RARGARVTDIAVIV 572 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m-r~rga~~ADiVILV 572 (996)
+++.|..|+||||+...|...-... |.. ... ++ .+.++|+|+......+ .......+|.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~----g~~------v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR----GKR------VLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCe------EEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 6888999999999998876432211 100 111 12 5899999986443322 13455788999999
Q ss_pred EecCCCCChhHH
Q 001915 573 VAADDGIRPQTN 584 (996)
Q Consensus 573 VDAsdgv~~Qt~ 584 (996)
++.+........
T Consensus 66 ~~~~~~~~~~~~ 77 (99)
T cd01983 66 TTPEALAVLGAR 77 (99)
T ss_pred cCCchhhHHHHH
Confidence 988764444333
No 470
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=94.75 E-value=1.1 Score=55.13 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=70.8
Q ss_pred EeEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCC-CC
Q 001915 886 GSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDL-EE 962 (996)
Q Consensus 886 G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~-~k~dV~ev~~G~ECGI~i~~f~d~-~~ 962 (996)
..+.|..+|. .+.|.++-+.|.+|+++.|..+.+.. ..|+|.+|.. ..+.|+++..|+=|.|. +|++. ..
T Consensus 262 ~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~-----~~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~~p~a 334 (587)
T TIGR00487 262 ASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGA-----AYGRVRAMIDENGKSVKEAGPSKPVEIL--GLSDVPAA 334 (587)
T ss_pred ceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECC-----CccEEEEEECCCCCCCCEECCCCEEEEe--CCCCCCCC
Confidence 4666778886 46799999999999999999976532 2589999987 66899999999877765 88887 89
Q ss_pred CCEEEEEEEEEeehhHHHH
Q 001915 963 GDIIEAFNSIQRKRTLEEA 981 (996)
Q Consensus 963 GD~ie~y~~~~~~~~l~~~ 981 (996)
||.+.+++..+..+.+.+.
T Consensus 335 Gd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 335 GDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred CCEEEEcCCHHHHHHHHHH
Confidence 9999988766655554433
No 471
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.69 E-value=0.11 Score=49.33 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=57.7
Q ss_pred EEEE-cCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 494 LTIM-GHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 494 VaIV-Gh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
|+++ +..|+||||+.-.|-..-.... |.... -+...... ...+.++|||+.... .....+..+|.+|++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~---~~~~~----l~d~d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvv 71 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA---GRRVL----LVDLDLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLV 71 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC---CCcEE----EEECCCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEE
Confidence 3443 4589999998776642211110 11110 11111111 126999999996433 334466889999999
Q ss_pred EecCCCCChhHHHHHHHHHHcCC----CEEEEecc
Q 001915 573 VAADDGIRPQTNEAIAHAKAAGV----PIVIAINK 603 (996)
Q Consensus 573 VDAsdgv~~Qt~E~I~~ak~~~I----PIIVVINK 603 (996)
++.+..-.......++.+...+. .+.+++|+
T Consensus 72 v~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 72 TQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred ecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 98876555555566666655443 46688875
No 472
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.61 E-value=0.16 Score=59.30 Aligned_cols=142 Identities=17% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc---cccccCCceeeeceEEE-----------------EEee----------CC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKV-----------------QVPV----------DG 539 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v---a~se~gGiTqdI~a~~V-----------------~i~i----------dg 539 (996)
.+.+|++||+.|+||||-|-.|-...+ .....+-+|.| .|.+ .... .-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 377899999999999998887743222 01112223333 1111 0100 12
Q ss_pred ccccEEEEeCCCccchHHH----HHHhhh--cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhH
Q 001915 540 KLQPCVFLDTPGHEAFGAM----RARGAR--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~m----r~rga~--~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~er 613 (996)
..+.+.|+||.|+..+..+ +..++. ...-+.||++++-. .....+.+.+....++. =++++|+|-. ...-.
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET-~s~G~ 356 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDET-TSLGN 356 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEccccc-CchhH
Confidence 3468999999996554433 223332 34556778887641 22234455555543333 3567999953 23444
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhh
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdE 647 (996)
+...+.... .|+..++ +|++|.+
T Consensus 357 ~~s~~~e~~---------~PV~YvT--~GQ~VPe 379 (407)
T COG1419 357 LFSLMYETR---------LPVSYVT--NGQRVPE 379 (407)
T ss_pred HHHHHHHhC---------CCeEEEe--CCCCCCc
Confidence 555555543 3444443 6777654
No 473
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.54 E-value=0.22 Score=56.60 Aligned_cols=102 Identities=19% Similarity=0.115 Sum_probs=70.3
Q ss_pred EEEeCCCcc-chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCC
Q 001915 545 VFLDTPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGL 623 (996)
Q Consensus 545 tfIDTPGhE-~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl 623 (996)
.+-+.|||. .+.......+...|+++.|+|+.+.........-+... +.|.++++||+|+.. .....++......
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~--~~~~~~W~~~~~~ 88 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAP--KEVTKKWKKYFKK 88 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCC--HHHHHHHHHHHHh
Confidence 445559974 56667777889999999999999987777666655555 456699999999953 2223333322211
Q ss_pred CCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 624 MPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 624 ~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
. .....+.+|++.+.+...+..++..+
T Consensus 89 ~-----~~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 89 E-----EGIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred c-----CCCccEEEEeecccCccchHHHHHHH
Confidence 1 02467889999999888888665544
No 474
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.1 Score=60.25 Aligned_cols=116 Identities=25% Similarity=0.317 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc----CCccc------c-ccC--------CceeeeceEEEEEe------------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK----TKVAA------A-EAG--------GITQGIGAYKVQVP------------ 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~----s~va~------s-e~g--------GiTqdI~a~~V~i~------------ 536 (996)
..+|-+|.++|--|+||||.+-.|.. ..+.. + .++ .+-..+.+|--...
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 35677899999999999998876631 11100 0 011 11112222221111
Q ss_pred -eCCccccEEEEeCCC-c----cchHHHHHH-hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCC
Q 001915 537 -VDGKLQPCVFLDTPG-H----EAFGAMRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (996)
Q Consensus 537 -idgk~~~ItfIDTPG-h----E~F~~mr~r-ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL 606 (996)
+...++.+.|+||.| | +-|..|... .+-..|-+|+|+|++-| |..+....+-...+- --++++|+|-
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEeccc
Confidence 123567899999999 2 235555443 23567999999999864 332222222111222 2467899995
No 475
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.27 E-value=1.2 Score=56.43 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=70.2
Q ss_pred eEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCC-CCC
Q 001915 887 SAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDL-EEG 963 (996)
Q Consensus 887 ~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~-~k~dV~ev~~G~ECGI~i~~f~d~-~~G 963 (996)
.+.|..+|. ...|.++-++|.+|+|+.|..+.+ |. ..|+|.+|.. ....|+++..|+=|.|. ++++. ..|
T Consensus 465 ~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~---g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~~~p~~G 537 (787)
T PRK05306 465 RGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA---GT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLSGVPQAG 537 (787)
T ss_pred EEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEE---CC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCCCCCCCC
Confidence 455556665 467999999999999999998754 33 4699999987 46799999999988876 78888 999
Q ss_pred CEEEEEEEEEeehhHHHHHH
Q 001915 964 DIIEAFNSIQRKRTLEEASA 983 (996)
Q Consensus 964 D~ie~y~~~~~~~~l~~~~~ 983 (996)
|.+.+++.....+.+-+...
T Consensus 538 d~l~~~~~e~~a~~~~~~r~ 557 (787)
T PRK05306 538 DEFVVVEDEKKAREIAEYRQ 557 (787)
T ss_pred CEEEEcCCHHHHHHHHHHHH
Confidence 99999876665555544433
No 476
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=94.22 E-value=0.4 Score=43.40 Aligned_cols=72 Identities=32% Similarity=0.392 Sum_probs=56.5
Q ss_pred EEeec---CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEccCCCCCCCCEE
Q 001915 892 AIFSS---GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 892 ~vF~~---~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~-k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
.||+. ..|.++=++|.+|.|++|..+..++.++....++|--+.-. ..+++++.+|.=|+ +.+.+ +.+||.|
T Consensus 4 ~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~~-~~~Gdtl 79 (81)
T cd04091 4 LAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGID-CASGDTF 79 (81)
T ss_pred EEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECCC-cccCCEe
Confidence 46653 34999999999999999999999887764455666666644 67899999999777 44565 9999987
No 477
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.14 E-value=0.21 Score=55.52 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCcccc---EEEEeCCCc----cchHHHHHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQP---CVFLDTPGH----EAFGAMRARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~---ItfIDTPGh----E~F~~mr~rga~ 564 (996)
|-|+|+|.|++||||+...|...... .+.... .+ +..... -.+.|...- ..+.....+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~----~~~~v~----~i----~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE----KGKEVV----II----SDDSLGIDRNDYADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH----TT--EE----EE-----THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cCCEEE----EE----cccccccchhhhhchhhhHHHHHHHHHHHHHhhc
Confidence 46899999999999999998753211 111111 01 111000 002233221 112233334444
Q ss_pred cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC----------C--ChhHHHHHHHh-cCCCCCCCCCC
Q 001915 565 VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG----------A--NPERVMQELSS-IGLMPEDWGGD 631 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~----------a--~~erv~~eL~~-~gl~~e~~gg~ 631 (996)
.- .|+++|...-+...-++++..++..+.++.++...+++.. . -.+++...|.. +........++
T Consensus 70 ~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD 147 (270)
T PF08433_consen 70 KD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWD 147 (270)
T ss_dssp T---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGG
T ss_pred cC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCcc
Confidence 33 4556888887888889999999999999888888887621 0 12333333332 22222222235
Q ss_pred CcEEEec-cCCCCChhhHHHHHH
Q 001915 632 IPMVQIS-ALKGEKVDDLLETIM 653 (996)
Q Consensus 632 ipvVeIS-AktGeGIdEL~eaIl 653 (996)
.|.|.+. .-....+++++++|.
T Consensus 148 ~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 148 SPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp S-SEEEE-TTS---HHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHH
Confidence 5666665 555566778887773
No 478
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.12 E-value=0.32 Score=52.64 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=70.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhh--hcCCeEEE
Q 001915 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVI 571 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga--~~ADiVIL 571 (996)
|+++|.+|+||||+...|....-. .+.. ...+.. +.-...+..|+..+...+.......+ .......+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~----~~~~----v~~i~~--D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~V 71 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE----KNID----VIILGT--DLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSV 71 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----cCCc----eEEEcc--HHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeE
Confidence 789999999999999988642110 0111 111110 00000011133323222222111111 11123346
Q ss_pred EEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC----------CCChhHHHHHHH-hcCCCCCCCCCCCcEEEeccC
Q 001915 572 VVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----------GANPERVMQELS-SIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 572 VVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~----------~a~~erv~~eL~-~~gl~~e~~gg~ipvVeISAk 640 (996)
++|..........+.+..++..+.+.+++.-.++.. ...++.+...+. .+......+.++.+.+.+..-
T Consensus 72 I~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~ 151 (249)
T TIGR03574 72 IVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTT 151 (249)
T ss_pred EEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCC
Confidence 677655344444556667777788876665555531 011122222222 222111122234577777654
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
....++++.+.|+..
T Consensus 152 ~~~~~~ei~~~i~~~ 166 (249)
T TIGR03574 152 KKIDYNEILEEILEI 166 (249)
T ss_pred CCCCHHHHHHHHHHH
Confidence 434667888887643
No 479
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.06 E-value=0.12 Score=44.89 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=23.8
Q ss_pred hcCCeEEEEEecCCCCChhHHHHH---HHHHH-c-CCCEEEEecccC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAI---AHAKA-A-GVPIVIAINKID 605 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I---~~ak~-~-~IPIIVVINKiD 605 (996)
+..+++++++|.++.......+.+ +.++. . +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 678999999999975433332222 33333 3 899999999998
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=93.79 E-value=0.04 Score=63.27 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
....+++|+|.+|+|||||+|.|.+.
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHh
Confidence 34568999999999999999999854
No 481
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.62 E-value=0.049 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=18.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
+...+.|.|.+|+|||++++++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998653
No 482
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.44 E-value=0.23 Score=58.34 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH----cCCccc------cccC---------CceeeeceEEEEEee------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIR----KTKVAA------AEAG---------GITQGIGAYKVQVPV------------ 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~----~s~va~------se~g---------GiTqdI~a~~V~i~i------------ 537 (996)
.+|.+|.++|--|+||||.+-.|. +....+ .+.+ +.-.++.+|......
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 456789999999999999876653 211110 0100 111233333321100
Q ss_pred -CCccccEEEEeCCCc----cc-hHHHHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCE-EEEecccCC
Q 001915 538 -DGKLQPCVFLDTPGH----EA-FGAMRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI-VIAINKIDK 606 (996)
Q Consensus 538 -dgk~~~ItfIDTPGh----E~-F~~mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPI-IVVINKiDL 606 (996)
....+.+.|+||+|. +. +..+.. ...-..|=++||+|+.-| |+.......-...+++ =|+++|+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccC
Confidence 113457999999992 22 222222 233678999999999754 3332222222234553 478899996
No 483
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.36 E-value=0.41 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
......+|+++|.+|+||||+...|..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999999864
No 484
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=93.28 E-value=0.41 Score=45.44 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=64.0
Q ss_pred EEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccc-ccccccccCceeEEEEccCCCC-CCCC
Q 001915 888 AEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK-ENVKEVNAGLECGVGAADYDDL-EEGD 964 (996)
Q Consensus 888 A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k-~dV~ev~~G~ECGI~i~~f~d~-~~GD 964 (996)
+.|.+.-. .+.|.+|-+.|.+|+|+.|..+-. |. ..|+|.+|...+ +.|+++..|+=+-| -+|++. ..||
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~---G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~P~aGd 75 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVA---GT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGVPQAGD 75 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEE---cc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCCCCCCCCC
Confidence 34444443 467999999999999999998532 22 468999998865 99999999875544 589988 8899
Q ss_pred EEEEEEEEEeehhHH
Q 001915 965 IIEAFNSIQRKRTLE 979 (996)
Q Consensus 965 ~ie~y~~~~~~~~l~ 979 (996)
.+.+++..+..+.+-
T Consensus 76 ~~~~~~se~~Ak~~~ 90 (95)
T cd03702 76 KFLVVESEKEAKEIA 90 (95)
T ss_pred EEEEeCCHHHHHHHH
Confidence 999988755554443
No 485
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.091 Score=59.86 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=78.7
Q ss_pred chHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc
Q 001915 859 RVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV 937 (996)
Q Consensus 859 ~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~ 937 (996)
+-||+|+|.+-.++- .|.+....---.-|-.+|.+ +.|+|+=-++..|.+++|..+.++-.++. -.-.+..+.-|
T Consensus 231 ~aI~kLldavDsyip---~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~-lkttvtgiemF 306 (449)
T KOG0460|consen 231 EAIEKLLDAVDSYIP---TPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKT-LKTTVTGIEMF 306 (449)
T ss_pred HHHHHHHHHHhccCC---CcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcc-eeeEeehHHHH
Confidence 568999988876652 34444433233345689984 78999999999999999999999977664 45678999999
Q ss_pred cccccccccCceeEEEEccCC--CCCCCC
Q 001915 938 KENVKEVNAGLECGVGAADYD--DLEEGD 964 (996)
Q Consensus 938 k~dV~ev~~G~ECGI~i~~f~--d~~~GD 964 (996)
++.++++.+|..||+.+.+.. |++-|=
T Consensus 307 ~K~ld~a~AGDn~G~LlRGik~~dvkRGm 335 (449)
T KOG0460|consen 307 RKSLDEAQAGDNLGALLRGIKREDVKRGM 335 (449)
T ss_pred HHHHHhcccccceehhhhcCCHHHHhccc
Confidence 999999999999999988742 555443
No 486
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=93.16 E-value=0.62 Score=42.71 Aligned_cols=75 Identities=31% Similarity=0.323 Sum_probs=56.0
Q ss_pred EEeec----CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEE--EccCCCCCCCCE
Q 001915 892 AIFSS----GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVG--AADYDDLEEGDI 965 (996)
Q Consensus 892 ~vF~~----~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~--i~~f~d~~~GD~ 965 (996)
.||+. ..|.++=++|.+|+|+.|..+.+.+.++-...++|.-+-..+.++.++.+|.=|.+. +.+.+++..||.
T Consensus 4 ~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~~Gdt 83 (86)
T cd03699 4 LIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARVGDT 83 (86)
T ss_pred EEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCccccccE
Confidence 45653 358999999999999999999888766433455665332335789999999877773 345678899998
Q ss_pred E
Q 001915 966 I 966 (996)
Q Consensus 966 i 966 (996)
|
T Consensus 84 l 84 (86)
T cd03699 84 I 84 (86)
T ss_pred e
Confidence 7
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.15 E-value=0.11 Score=45.84 Aligned_cols=24 Identities=46% Similarity=0.571 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+.....|.|+.++|||||+++|..
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 335799999999999999999863
No 488
>PRK10218 GTP-binding protein; Provisional
Probab=92.86 E-value=2.5 Score=52.21 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=60.0
Q ss_pred EEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeC-CEEEEEEEEeeeecc----cccccccccCceeEEEEccCCCCC
Q 001915 888 AEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRD-GKTVHVGVLDSLRRV----KENVKEVNAGLECGVGAADYDDLE 961 (996)
Q Consensus 888 A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~-g~vi~~G~I~SLk~~----k~dV~ev~~G~ECGI~i~~f~d~~ 961 (996)
+.|-.+|. ...|+|+-.+|.+|+|+.|..+.+.+. |. .+..+|.+|-.+ +..|.++.+|.=|+| .+..++.
T Consensus 207 ~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~-~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl~~~~ 283 (607)
T PRK10218 207 MQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGK-TRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGLGELN 283 (607)
T ss_pred EEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCc-EeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECccccc
Confidence 44445543 357999999999999999999998875 54 455667777554 789999999998885 4788999
Q ss_pred CCCEE
Q 001915 962 EGDII 966 (996)
Q Consensus 962 ~GD~i 966 (996)
.||.|
T Consensus 284 ~GdTl 288 (607)
T PRK10218 284 ISDTV 288 (607)
T ss_pred cCcEE
Confidence 99999
No 489
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=92.76 E-value=0.82 Score=41.57 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=51.9
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCE---EEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGK---TVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~---vi~~G~I~SLk-~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
..|.++=++|.+|.|+.|..+++...+. ....++|.-+. ....++.++.+|+=|+| .+-+++..||.|
T Consensus 13 ~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl~~~~~Gdtl 84 (86)
T cd03691 13 YVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGIEDITIGDTI 84 (86)
T ss_pred CCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECCCCCccccee
Confidence 5689999999999999999999886532 22344454333 45588999999997744 467889999987
No 490
>PF05729 NACHT: NACHT domain
Probab=92.52 E-value=0.35 Score=47.38 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.|.|.+|+|||||+..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999998753
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.44 E-value=0.18 Score=52.11 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|.|.|.+|+|||||+.++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 492
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.41 E-value=1.2 Score=48.60 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=37.0
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHH----HcCCCE-EEEecccCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAK----AAGVPI-VIAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak----~~~IPI-IVVINKiDL 606 (996)
.+.+.|+||||.-.... ....+..||.+|+++..+..-.......+..+. ..++++ .+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 36789999988532211 112367899999988775422222222222222 235553 477899884
No 493
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.16 E-value=0.12 Score=54.13 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
|..++..|+|.|.+|+|||||++.|...
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999998763
No 494
>PRK04004 translation initiation factor IF-2; Validated
Probab=92.05 E-value=5.1 Score=49.42 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=63.8
Q ss_pred EeEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccc------------ccccccccCceeEE
Q 001915 886 GSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK------------ENVKEVNAGLECGV 952 (996)
Q Consensus 886 G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k------------~dV~ev~~G~ECGI 952 (996)
.++.|..+|. .+.|.++.+.|.+|+|+.|..+.+.-.+.. ..++|.+|...+ ..++++....-+=|
T Consensus 233 ~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~-i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 233 GKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGP-IVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred eEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCc-ceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 4677888887 467999999999999999999876543321 247888887753 55666666554444
Q ss_pred EEccCCCCCCCCEEEEEEE
Q 001915 953 GAADYDDLEEGDIIEAFNS 971 (996)
Q Consensus 953 ~i~~f~d~~~GD~ie~y~~ 971 (996)
...++++...||.+.+++-
T Consensus 312 ~~~gl~~~~~g~~~~v~~~ 330 (586)
T PRK04004 312 SAPDLEDALAGSPLRVVRD 330 (586)
T ss_pred EeCCccccCCCCeEEEeCc
Confidence 4458999999999999975
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.92 E-value=0.14 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
+|+|.|.+++|||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 496
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=91.83 E-value=1.3 Score=41.28 Aligned_cols=68 Identities=28% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCceEEEEEEeeceEeeCCcEEEee---------CCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIR---------DGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR---------~g~vi~~G~I~SLk~-~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
..+.++=|+|..|.|++|..+.++. .+.....++|.-+.- ...+|.++.+|+=|+|. +.++++.||..
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g~~~~~~g~~~ 91 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--GLDQLKSGTTA 91 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--CCccCceEeEe
Confidence 4689999999999999999998887 222223344433332 34889999999999886 55668888864
No 497
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.9 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+|+++|.-|+|||||++.|..+
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 47899999999999999998644
No 498
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=91.73 E-value=0.11 Score=64.23 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=45.4
Q ss_pred ccEEEEeCCCc-------------cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc---CCCEEEEecccC
Q 001915 542 QPCVFLDTPGH-------------EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA---GVPIVIAINKID 605 (996)
Q Consensus 542 ~~ItfIDTPGh-------------E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~---~IPIIVVINKiD 605 (996)
..++++|.||. +....|...|+...+.+|+.+...+ ...-+-+.+..++.- +.-.|-|++|+|
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~ats~alkiarevDp~g~RTigvitK~D 210 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIATSPALVVAREVDPGGSRTLEVITKFD 210 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence 36899999992 3466788888888899998887654 233344455555543 445788888888
Q ss_pred CCC
Q 001915 606 KDG 608 (996)
Q Consensus 606 L~~ 608 (996)
+.+
T Consensus 211 lmd 213 (657)
T KOG0446|consen 211 FMD 213 (657)
T ss_pred hhh
Confidence 743
No 499
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=91.68 E-value=1.1 Score=41.25 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=52.8
Q ss_pred CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEccCCCCCCCCEE
Q 001915 898 SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 898 ~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~-k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
.|+++=++|..|+|+.|..+...++++-...++|-.++-. +.++.++.+|.=|++. +.+++..||.|
T Consensus 15 ~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--gl~~~~~Gdtl 82 (85)
T cd03689 15 RDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--NPGNFQIGDTL 82 (85)
T ss_pred CcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--CCCCccccCEe
Confidence 5889999999999999999988887753344555555443 3789999999877775 57888899988
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.63 E-value=0.58 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.++..|+|+|.+|+|||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35667999999999999999999754
Done!