Query 001915
Match_columns 996
No_of_seqs 677 out of 3825
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zo1_I IF2, translation initia 100.0 2.4E-97 8E-102 860.4 5.9 477 489-977 2-501 (501)
2 3izy_P Translation initiation 100.0 2.4E-95 8E-100 849.7 9.7 479 489-970 2-537 (537)
3 1g7s_A Translation initiation 100.0 3E-81 1E-85 739.3 31.8 455 489-981 3-561 (594)
4 1d1n_A Initiation factor 2; be 100.0 2.8E-33 9.6E-38 259.0 7.0 98 880-977 1-99 (99)
5 2crv_A IF-2MT, translation ini 100.0 6.1E-33 2.1E-37 264.5 9.2 103 877-979 2-109 (120)
6 2ywe_A GTP-binding protein LEP 100.0 2E-30 6.8E-35 306.6 16.1 446 490-991 5-522 (600)
7 1z9b_A Translation initiation 100.0 1E-31 3.4E-36 262.0 -5.1 133 730-872 3-135 (135)
8 3cb4_D GTP-binding protein LEP 100.0 1.7E-27 6E-32 281.7 22.9 445 490-991 3-517 (599)
9 1s0u_A EIF-2-gamma, translatio 99.9 1.6E-25 5.5E-30 252.5 23.1 212 490-705 7-251 (408)
10 3j2k_7 ERF3, eukaryotic polype 99.9 6.1E-26 2.1E-30 259.1 19.8 209 489-706 15-280 (439)
11 1d2e_A Elongation factor TU (E 99.9 6.6E-26 2.3E-30 255.1 19.6 224 491-725 3-270 (397)
12 1wb1_A Translation elongation 99.9 1.3E-26 4.4E-31 267.8 14.0 212 489-705 17-236 (482)
13 1kk1_A EIF2gamma; initiation o 99.9 3.1E-25 1.1E-29 250.2 23.3 212 490-705 9-253 (410)
14 2c78_A Elongation factor TU-A; 99.9 1.8E-25 6E-30 251.8 19.3 225 490-725 10-288 (405)
15 2lkc_A Translation initiation 99.9 3.2E-25 1.1E-29 215.9 13.8 173 487-663 4-176 (178)
16 2rdo_7 EF-G, elongation factor 99.9 1E-23 3.5E-28 253.8 29.8 301 489-812 8-449 (704)
17 3p26_A Elongation factor 1 alp 99.9 9.1E-25 3.1E-29 251.8 19.1 211 488-706 30-307 (483)
18 2elf_A Protein translation elo 99.9 1.7E-24 5.9E-29 242.5 19.0 205 493-713 23-239 (370)
19 3sjy_A Translation initiation 99.9 1.1E-23 3.7E-28 237.4 23.8 215 488-706 5-246 (403)
20 1zun_B Sulfate adenylate trans 99.9 2.6E-24 8.8E-29 244.8 18.7 228 490-725 23-308 (434)
21 1f60_A Elongation factor EEF1A 99.9 5.3E-25 1.8E-29 252.6 12.1 214 490-713 6-290 (458)
22 3mca_A HBS1, elongation factor 99.9 1.6E-25 5.6E-30 264.6 7.8 217 489-713 175-450 (592)
23 1r5b_A Eukaryotic peptide chai 99.9 3.3E-25 1.1E-29 254.9 9.7 217 489-714 41-319 (467)
24 3vqt_A RF-3, peptide chain rel 99.9 9.5E-24 3.3E-28 247.6 21.5 325 489-856 29-480 (548)
25 1dar_A EF-G, elongation factor 99.9 1.7E-23 5.9E-28 251.4 24.1 298 490-820 11-459 (691)
26 1jny_A EF-1-alpha, elongation 99.9 3.4E-24 1.2E-28 244.0 16.0 213 490-713 5-279 (435)
27 3avx_A Elongation factor TS, e 99.9 1.3E-23 4.3E-28 260.6 19.7 225 490-725 295-561 (1289)
28 3izq_1 HBS1P, elongation facto 99.9 3.5E-24 1.2E-28 254.2 14.0 208 489-706 165-441 (611)
29 2dy1_A Elongation factor G; tr 99.9 4.8E-23 1.7E-27 246.5 21.6 296 489-812 7-416 (665)
30 3tr5_A RF-3, peptide chain rel 99.9 1.7E-23 5.7E-28 244.6 16.2 328 490-859 12-464 (528)
31 3j25_A Tetracycline resistance 99.9 1.2E-24 4.1E-29 259.2 5.2 210 490-705 1-284 (638)
32 2hjg_A GTP-binding protein ENG 99.9 8.2E-23 2.8E-27 232.4 12.4 222 489-718 173-428 (436)
33 2h5e_A Peptide chain release f 99.9 2.8E-22 9.5E-27 234.3 16.7 326 490-859 12-465 (529)
34 2xex_A Elongation factor G; GT 99.9 1.4E-21 4.6E-26 235.0 22.1 296 490-812 9-441 (693)
35 4fn5_A EF-G 1, elongation fact 99.9 5.6E-22 1.9E-26 238.8 17.7 298 490-810 12-450 (709)
36 4dcu_A GTP-binding protein ENG 99.9 4.9E-22 1.7E-26 227.2 13.4 224 488-719 192-449 (456)
37 4dkx_A RAS-related protein RAB 99.9 5.1E-21 1.8E-25 199.1 16.3 156 489-655 11-173 (216)
38 3t1o_A Gliding protein MGLA; G 99.9 4.8E-21 1.7E-25 188.6 15.2 159 490-656 13-190 (198)
39 2bme_A RAB4A, RAS-related prot 99.8 2.1E-20 7.3E-25 183.5 16.5 157 489-656 8-171 (186)
40 1c1y_A RAS-related protein RAP 99.8 2E-20 6.7E-25 179.4 15.9 155 490-655 2-164 (167)
41 3tkl_A RAS-related protein RAB 99.8 1.8E-20 6.1E-25 185.5 15.9 157 489-656 14-177 (196)
42 1kao_A RAP2A; GTP-binding prot 99.8 1.8E-20 6.1E-25 178.9 15.3 154 490-655 2-163 (167)
43 1u8z_A RAS-related protein RAL 99.8 2.1E-20 7.1E-25 178.6 15.7 154 490-655 3-164 (168)
44 1upt_A ARL1, ADP-ribosylation 99.8 1.8E-20 6.2E-25 180.8 15.1 157 488-655 4-166 (171)
45 3kkq_A RAS-related protein M-R 99.8 2.7E-20 9.1E-25 182.7 16.2 156 489-656 16-180 (183)
46 1z0f_A RAB14, member RAS oncog 99.8 2.2E-20 7.5E-25 181.1 15.4 155 490-655 14-175 (179)
47 2efe_B Small GTP-binding prote 99.8 2.2E-20 7.5E-25 182.2 15.2 156 489-655 10-172 (181)
48 2fn4_A P23, RAS-related protei 99.8 2.4E-20 8.1E-25 181.2 15.3 157 488-656 6-170 (181)
49 2g6b_A RAS-related protein RAB 99.8 3.2E-20 1.1E-24 180.9 16.0 157 489-656 8-172 (180)
50 3tw8_B RAS-related protein RAB 99.8 1.5E-20 5.2E-25 182.5 13.6 158 489-657 7-170 (181)
51 2a9k_A RAS-related protein RAL 99.8 3.8E-20 1.3E-24 180.6 16.4 156 490-657 17-180 (187)
52 3clv_A RAB5 protein, putative; 99.8 4.8E-20 1.6E-24 181.2 16.9 156 490-656 6-202 (208)
53 2hxs_A RAB-26, RAS-related pro 99.8 1.5E-20 5.1E-25 182.9 13.0 156 489-655 4-170 (178)
54 3bc1_A RAS-related protein RAB 99.8 5.2E-20 1.8E-24 180.4 16.8 156 490-656 10-183 (195)
55 1r2q_A RAS-related protein RAB 99.8 2.7E-20 9.3E-25 178.6 14.5 154 490-654 5-165 (170)
56 2nzj_A GTP-binding protein REM 99.8 5.5E-20 1.9E-24 178.1 16.7 155 490-656 3-167 (175)
57 1g16_A RAS-related protein SEC 99.8 1.2E-20 4.1E-25 181.5 12.0 155 491-656 3-163 (170)
58 1wms_A RAB-9, RAB9, RAS-relate 99.8 6.8E-20 2.3E-24 178.1 17.2 156 490-655 6-171 (177)
59 2dyk_A GTP-binding protein; GT 99.8 3.2E-20 1.1E-24 177.3 14.6 149 492-654 2-158 (161)
60 1z08_A RAS-related protein RAB 99.8 3E-20 1E-24 179.1 14.2 155 490-655 5-166 (170)
61 1ky3_A GTP-binding protein YPT 99.8 3.8E-20 1.3E-24 179.9 14.9 159 489-656 6-176 (182)
62 4bas_A ADP-ribosylation factor 99.8 2.1E-20 7.1E-25 185.5 13.2 160 488-656 14-187 (199)
63 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.3E-20 7.9E-25 182.4 13.3 155 490-655 4-177 (186)
64 2bov_A RAla, RAS-related prote 99.8 6.8E-20 2.3E-24 182.7 17.0 158 489-658 12-177 (206)
65 2fu5_C RAS-related protein RAB 99.8 1.3E-20 4.3E-25 185.0 11.2 157 490-657 7-170 (183)
66 1r8s_A ADP-ribosylation factor 99.8 1.2E-19 4E-24 174.3 17.6 153 492-655 1-159 (164)
67 1z2a_A RAS-related protein RAB 99.8 4.1E-20 1.4E-24 177.4 14.3 155 490-655 4-164 (168)
68 2y8e_A RAB-protein 6, GH09086P 99.8 5.5E-20 1.9E-24 178.2 15.2 154 490-654 13-173 (179)
69 1ek0_A Protein (GTP-binding pr 99.8 5.7E-20 2E-24 176.3 15.1 153 491-654 3-165 (170)
70 4dsu_A GTPase KRAS, isoform 2B 99.8 5.3E-20 1.8E-24 180.3 15.2 156 490-657 3-165 (189)
71 1zbd_A Rabphilin-3A; G protein 99.8 8.7E-20 3E-24 182.6 16.8 156 490-656 7-169 (203)
72 3cph_A RAS-related protein SEC 99.8 4.3E-20 1.5E-24 185.5 14.6 158 488-656 17-180 (213)
73 2hup_A RAS-related protein RAB 99.8 6.4E-20 2.2E-24 185.3 15.8 158 489-656 27-191 (201)
74 3q85_A GTP-binding protein REM 99.8 7.3E-20 2.5E-24 176.6 15.4 154 492-656 3-165 (169)
75 3t5g_A GTP-binding protein RHE 99.8 2.3E-20 7.8E-25 182.9 11.8 155 490-656 5-167 (181)
76 3reg_A RHO-like small GTPase; 99.8 4.7E-20 1.6E-24 183.7 14.2 157 489-656 21-186 (194)
77 2ew1_A RAS-related protein RAB 99.8 5.2E-20 1.8E-24 187.4 14.8 157 489-656 24-187 (201)
78 2gco_A H9, RHO-related GTP-bin 99.8 4.7E-20 1.6E-24 185.7 14.2 160 485-655 19-197 (201)
79 1zj6_A ADP-ribosylation factor 99.8 7E-20 2.4E-24 181.4 15.1 158 488-656 13-176 (187)
80 3q72_A GTP-binding protein RAD 99.8 6.5E-20 2.2E-24 176.4 14.5 152 491-656 2-162 (166)
81 2oil_A CATX-8, RAS-related pro 99.8 3.7E-20 1.3E-24 183.9 13.0 157 489-656 23-186 (193)
82 2il1_A RAB12; G-protein, GDP, 99.8 5.1E-20 1.7E-24 184.2 14.0 156 490-655 25-187 (192)
83 2p5s_A RAS and EF-hand domain 99.8 1.1E-19 3.8E-24 182.4 16.5 156 489-655 26-194 (199)
84 2atx_A Small GTP binding prote 99.8 9.2E-20 3.2E-24 181.2 15.4 155 490-655 17-190 (194)
85 1vg8_A RAS-related protein RAB 99.8 8.8E-20 3E-24 182.4 15.3 159 489-657 6-174 (207)
86 1z0j_A RAB-22, RAS-related pro 99.8 6.9E-20 2.4E-24 176.1 13.9 155 490-655 5-166 (170)
87 1x3s_A RAS-related protein RAB 99.8 6.8E-20 2.3E-24 180.8 14.2 156 490-656 14-176 (195)
88 3bwd_D RAC-like GTP-binding pr 99.8 2.2E-20 7.4E-25 182.4 10.4 156 489-655 6-178 (182)
89 3gee_A MNME, tRNA modification 99.8 5.9E-21 2E-25 220.6 7.4 224 411-655 159-395 (476)
90 4dhe_A Probable GTP-binding pr 99.8 3.7E-20 1.3E-24 188.0 12.3 162 489-655 27-208 (223)
91 2bcg_Y Protein YP2, GTP-bindin 99.8 5.2E-20 1.8E-24 185.0 13.2 157 490-657 7-170 (206)
92 2ce2_X GTPase HRAS; signaling 99.8 3.3E-19 1.1E-23 169.5 18.0 153 491-655 3-162 (166)
93 2fg5_A RAB-22B, RAS-related pr 99.8 9.2E-20 3.2E-24 181.9 14.8 156 489-655 21-183 (192)
94 2j0v_A RAC-like GTP-binding pr 99.8 4.7E-20 1.6E-24 186.1 12.8 156 490-656 8-178 (212)
95 1svi_A GTP-binding protein YSX 99.8 2E-19 7E-24 178.1 16.9 155 489-655 21-192 (195)
96 2erx_A GTP-binding protein DI- 99.8 1.8E-19 6.3E-24 173.1 16.0 153 491-655 3-164 (172)
97 2fh5_B SR-beta, signal recogni 99.8 2.2E-19 7.7E-24 181.4 17.1 161 489-655 5-213 (214)
98 2a5j_A RAS-related protein RAB 99.8 7.2E-20 2.5E-24 182.2 13.2 157 489-656 19-182 (191)
99 1ksh_A ARF-like protein 2; sma 99.8 1.4E-19 4.8E-24 178.4 15.1 157 489-656 16-178 (186)
100 3pqc_A Probable GTP-binding pr 99.8 3.2E-19 1.1E-23 175.6 17.6 156 489-655 21-191 (195)
101 1z06_A RAS-related protein RAB 99.8 1E-19 3.5E-24 180.5 14.1 155 489-654 18-184 (189)
102 2q3h_A RAS homolog gene family 99.8 1E-19 3.5E-24 181.8 14.2 158 488-656 17-193 (201)
103 1zd9_A ADP-ribosylation factor 99.8 1.5E-19 5.2E-24 179.8 15.3 158 488-655 19-182 (188)
104 4gzl_A RAS-related C3 botulinu 99.8 7E-20 2.4E-24 185.5 13.1 155 489-654 28-201 (204)
105 1f6b_A SAR1; gtpases, N-termin 99.8 5.3E-20 1.8E-24 185.8 12.0 161 487-654 21-195 (198)
106 2gf9_A RAS-related protein RAB 99.8 1.2E-19 4E-24 180.1 14.2 156 490-656 21-183 (189)
107 2h17_A ADP-ribosylation factor 99.8 1.3E-19 4.3E-24 179.0 14.3 156 488-654 18-179 (181)
108 1fzq_A ADP-ribosylation factor 99.8 4.8E-19 1.7E-23 175.8 18.5 156 489-655 14-175 (181)
109 3dz8_A RAS-related protein RAB 99.8 9.8E-20 3.4E-24 181.3 13.3 157 489-656 21-184 (191)
110 2yc2_C IFT27, small RAB-relate 99.8 3.1E-20 1.1E-24 185.0 9.7 157 489-656 18-190 (208)
111 2gf0_A GTP-binding protein DI- 99.8 3E-19 1E-23 177.1 16.7 155 489-655 6-168 (199)
112 3o47_A ADP-ribosylation factor 99.8 7.2E-20 2.5E-24 201.3 13.4 232 411-655 84-324 (329)
113 2f7s_A C25KG, RAS-related prot 99.8 1.4E-19 4.8E-24 183.3 14.3 157 489-656 23-197 (217)
114 2h57_A ADP-ribosylation factor 99.8 1.3E-19 4.5E-24 179.9 13.8 159 488-655 18-184 (190)
115 3con_A GTPase NRAS; structural 99.8 3.9E-19 1.3E-23 175.7 16.8 156 490-657 20-182 (190)
116 1m2o_B GTP-binding protein SAR 99.8 1.5E-19 5.1E-24 181.1 13.8 160 487-653 19-187 (190)
117 2fv8_A H6, RHO-related GTP-bin 99.8 1.3E-19 4.4E-24 183.3 13.4 164 487-656 21-198 (207)
118 3q3j_B RHO-related GTP-binding 99.8 1.4E-19 4.8E-24 185.1 13.5 157 489-656 25-201 (214)
119 2j1l_A RHO-related GTP-binding 99.8 2.4E-19 8.1E-24 182.9 14.9 158 488-656 31-207 (214)
120 1m7b_A RND3/RHOE small GTP-bin 99.8 1.2E-19 3.9E-24 179.7 12.0 157 489-656 5-181 (184)
121 2o52_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 182.8 12.4 157 489-656 23-186 (200)
122 2b6h_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 178.6 15.6 157 488-655 26-188 (192)
123 1mky_A Probable GTP-binding pr 99.8 2.7E-19 9.1E-24 203.7 16.5 222 489-718 178-431 (439)
124 2wji_A Ferrous iron transport 99.8 3.3E-19 1.1E-23 174.1 14.8 150 491-654 3-161 (165)
125 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-19 5.3E-24 176.9 12.4 157 489-656 16-178 (183)
126 1n0u_A EF-2, elongation factor 99.8 4.7E-19 1.6E-23 217.2 19.5 118 490-607 18-163 (842)
127 3ihw_A Centg3; RAS, centaurin, 99.8 7.1E-19 2.4E-23 175.6 17.3 152 488-656 17-178 (184)
128 3cbq_A GTP-binding protein REM 99.8 4.6E-19 1.6E-23 178.8 16.0 156 490-656 22-186 (195)
129 2atv_A RERG, RAS-like estrogen 99.8 8.7E-19 3E-23 175.1 17.5 155 489-656 26-189 (196)
130 1wf3_A GTP-binding protein; GT 99.8 2.1E-19 7.1E-24 195.9 14.0 153 490-654 6-169 (301)
131 1ega_A Protein (GTP-binding pr 99.8 1.3E-19 4.5E-24 197.0 12.2 156 489-654 6-171 (301)
132 3iev_A GTP-binding protein ERA 99.8 4.9E-19 1.7E-23 192.9 16.8 157 490-655 9-179 (308)
133 3cpj_B GTP-binding protein YPT 99.8 1.6E-19 5.4E-24 185.0 12.0 156 489-655 11-173 (223)
134 3oes_A GTPase rhebl1; small GT 99.8 1.1E-19 3.8E-24 182.7 10.4 156 489-656 22-185 (201)
135 2iwr_A Centaurin gamma 1; ANK 99.8 6.5E-19 2.2E-23 172.1 15.3 150 490-656 6-167 (178)
136 2x77_A ADP-ribosylation factor 99.8 2.7E-19 9.3E-24 177.1 12.5 157 489-656 20-182 (189)
137 4djt_A GTP-binding nuclear pro 99.8 1.1E-19 3.8E-24 184.2 9.9 157 490-656 10-173 (218)
138 3geh_A MNME, tRNA modification 99.8 2.2E-20 7.4E-25 215.2 5.2 221 411-655 151-381 (462)
139 2cxx_A Probable GTP-binding pr 99.8 5.9E-19 2E-23 173.4 14.3 155 492-656 2-182 (190)
140 3gj0_A GTP-binding nuclear pro 99.8 6E-20 2E-24 187.2 6.8 156 489-655 13-172 (221)
141 2qu8_A Putative nucleolar GTP- 99.8 8.6E-19 3E-23 180.4 15.0 159 487-656 25-203 (228)
142 1gwn_A RHO-related GTP-binding 99.8 4.2E-19 1.4E-23 181.0 12.1 157 489-656 26-202 (205)
143 3c5c_A RAS-like protein 12; GD 99.8 1E-18 3.6E-23 174.3 14.6 154 489-655 19-183 (187)
144 3llu_A RAS-related GTP-binding 99.8 5E-19 1.7E-23 177.5 11.8 159 488-654 17-193 (196)
145 2gj8_A MNME, tRNA modification 99.8 4.6E-19 1.6E-23 175.2 11.2 150 490-656 3-164 (172)
146 2wjg_A FEOB, ferrous iron tran 99.8 1.2E-18 4.2E-23 171.5 14.3 153 490-656 6-167 (188)
147 1mky_A Probable GTP-binding pr 99.8 1.6E-18 5.3E-23 197.4 16.0 153 492-656 2-164 (439)
148 3iby_A Ferrous iron transport 99.8 1.6E-18 5.3E-23 184.7 13.3 148 492-653 2-162 (256)
149 3a1s_A Iron(II) transport prot 99.8 2.9E-18 9.8E-23 182.6 14.5 153 490-656 4-165 (258)
150 1xzp_A Probable tRNA modificat 99.8 2.7E-19 9.3E-24 207.1 7.0 154 486-655 238-402 (482)
151 3i8s_A Ferrous iron transport 99.8 1.8E-18 6E-23 185.4 12.1 150 490-653 2-164 (274)
152 2g3y_A GTP-binding protein GEM 99.8 7.4E-18 2.5E-22 174.4 16.1 156 490-656 36-201 (211)
153 3l0i_B RAS-related protein RAB 99.8 3.8E-20 1.3E-24 185.8 -1.2 155 489-654 31-192 (199)
154 3th5_A RAS-related C3 botulinu 99.6 5.9E-20 2E-24 184.7 0.0 162 489-654 28-201 (204)
155 3b1v_A Ferrous iron uptake tra 99.7 6.1E-18 2.1E-22 182.0 14.7 149 491-654 3-160 (272)
156 2wkq_A NPH1-1, RAS-related C3 99.7 6.4E-18 2.2E-22 181.2 14.4 158 487-655 151-327 (332)
157 2cjw_A GTP-binding protein GEM 99.7 5.9E-18 2E-22 170.3 12.8 156 490-656 5-170 (192)
158 3k53_A Ferrous iron transport 99.7 1.1E-17 3.7E-22 178.0 15.3 151 490-656 2-164 (271)
159 2hjg_A GTP-binding protein ENG 99.7 2.9E-18 9.8E-23 195.1 11.1 151 491-655 3-162 (436)
160 3qq5_A Small GTP-binding prote 99.7 1.5E-18 5.3E-23 197.9 8.8 153 490-655 33-193 (423)
161 2zej_A Dardarin, leucine-rich 99.7 5E-18 1.7E-22 168.6 11.1 161 491-655 2-175 (184)
162 3lvq_E ARF-GAP with SH3 domain 99.7 1.7E-17 5.8E-22 190.7 15.4 158 487-655 318-481 (497)
163 3r7w_A Gtpase1, GTP-binding pr 99.7 4.7E-17 1.6E-21 177.1 14.3 157 491-654 3-177 (307)
164 4dcu_A GTP-binding protein ENG 99.7 2.3E-17 7.8E-22 188.7 12.3 152 489-654 21-181 (456)
165 2xtp_A GTPase IMAP family memb 99.7 4.5E-17 1.5E-21 171.0 13.1 159 489-656 20-206 (260)
166 2f9l_A RAB11B, member RAS onco 99.7 2E-16 6.9E-21 158.9 14.4 156 490-656 4-166 (199)
167 2aka_B Dynamin-1; fusion prote 99.7 1.5E-16 5.1E-21 169.3 12.9 164 489-656 24-251 (299)
168 3c5h_A Glucocorticoid receptor 99.7 2E-17 6.7E-22 175.0 5.7 160 489-655 17-252 (255)
169 3dpu_A RAB family protein; roc 99.7 1.2E-16 4.1E-21 186.1 10.6 155 488-655 38-205 (535)
170 2e87_A Hypothetical protein PH 99.6 1.8E-15 6E-20 167.8 17.6 156 489-657 165-335 (357)
171 3t5d_A Septin-7; GTP-binding p 99.6 5.1E-16 1.8E-20 165.6 12.0 154 491-654 8-200 (274)
172 3lxw_A GTPase IMAP family memb 99.6 3.1E-16 1.1E-20 165.5 10.2 159 489-657 19-207 (247)
173 1nrj_B SR-beta, signal recogni 99.6 3.1E-15 1.1E-19 151.5 16.2 114 488-610 9-136 (218)
174 1lnz_A SPO0B-associated GTP-bi 99.6 4.4E-16 1.5E-20 173.0 10.8 155 491-656 158-328 (342)
175 3r7w_B Gtpase2, GTP-binding pr 99.6 2E-15 6.9E-20 167.2 13.9 154 493-653 1-169 (331)
176 2qtf_A Protein HFLX, GTP-bindi 99.6 6.1E-15 2.1E-19 165.1 17.5 155 492-657 180-353 (364)
177 1oix_A RAS-related protein RAB 99.6 4.7E-15 1.6E-19 148.8 13.9 155 490-654 28-188 (191)
178 1jwy_B Dynamin A GTPase domain 99.6 3.4E-15 1.1E-19 160.6 13.7 162 489-655 22-259 (315)
179 3lxx_A GTPase IMAP family memb 99.6 1.6E-14 5.5E-19 150.1 15.4 154 489-656 27-212 (239)
180 1pui_A ENGB, probable GTP-bind 99.6 1.2E-14 4E-19 146.2 13.7 157 489-655 24-196 (210)
181 2j69_A Bacterial dynamin-like 99.5 5.3E-14 1.8E-18 169.4 15.5 170 486-655 64-322 (695)
182 2x2e_A Dynamin-1; nitration, h 99.5 1.1E-14 3.7E-19 161.2 7.3 162 489-654 29-254 (353)
183 2ged_A SR-beta, signal recogni 99.5 3.5E-14 1.2E-18 140.5 9.0 118 489-617 46-180 (193)
184 3def_A T7I23.11 protein; chlor 99.5 1.6E-13 5.6E-18 145.4 11.6 115 489-607 34-164 (262)
185 3t34_A Dynamin-related protein 99.4 3.8E-13 1.3E-17 149.0 13.4 159 488-653 31-256 (360)
186 2qag_A Septin-2, protein NEDD5 99.4 8.3E-14 2.8E-18 155.4 7.0 156 490-654 36-229 (361)
187 1wxq_A GTP-binding protein; st 99.4 1.2E-13 4.1E-18 156.3 8.2 87 492-578 1-114 (397)
188 2wsm_A Hydrogenase expression/ 99.4 1.2E-13 3.9E-18 140.5 6.3 151 490-655 29-211 (221)
189 1h65_A Chloroplast outer envel 99.4 2E-12 6.7E-17 137.5 13.2 116 489-608 37-168 (270)
190 3p32_A Probable GTPase RV1496/ 99.4 4.7E-13 1.6E-17 148.5 8.3 160 488-656 76-282 (355)
191 1udx_A The GTP-binding protein 99.3 4.5E-12 1.5E-16 144.5 13.9 157 489-656 155-323 (416)
192 3zvr_A Dynamin-1; hydrolase, D 99.3 4.6E-12 1.6E-16 153.6 14.1 162 490-655 50-275 (772)
193 2www_A Methylmalonic aciduria 99.3 9.4E-13 3.2E-17 146.3 7.3 110 540-656 165-277 (349)
194 2p67_A LAO/AO transport system 99.3 2E-12 6.7E-17 142.9 9.1 160 488-656 53-259 (341)
195 2qpt_A EH domain-containing pr 99.3 6.8E-12 2.3E-16 147.5 13.2 120 489-608 63-232 (550)
196 1yrb_A ATP(GTP)binding protein 99.3 3.7E-11 1.3E-15 125.4 15.7 114 542-656 109-255 (262)
197 2qnr_A Septin-2, protein NEDD5 99.2 1E-11 3.6E-16 135.2 8.7 154 491-655 18-211 (301)
198 4a9a_A Ribosome-interacting GT 99.2 6.6E-11 2.2E-15 133.4 13.6 110 492-607 73-195 (376)
199 2hf9_A Probable hydrogenase ni 99.2 5.9E-11 2E-15 121.0 11.9 153 489-655 36-221 (226)
200 1jal_A YCHF protein; nucleotid 99.2 8.2E-11 2.8E-15 132.0 11.4 84 492-577 3-108 (363)
201 2dby_A GTP-binding protein; GD 99.1 6.6E-11 2.2E-15 132.9 6.4 86 492-577 2-111 (368)
202 2qag_C Septin-7; cell cycle, c 99.1 1.9E-10 6.4E-15 131.3 10.0 153 491-653 31-222 (418)
203 3ohm_A Guanine nucleotide-bind 99.0 6.2E-10 2.1E-14 123.3 11.1 116 540-656 165-316 (327)
204 4fid_A G protein alpha subunit 99.0 7.4E-10 2.5E-14 123.3 11.1 117 540-656 159-326 (340)
205 2qm8_A GTPase/ATPase; G protei 99.0 9.1E-10 3.1E-14 121.9 11.5 159 489-656 53-259 (337)
206 1cip_A Protein (guanine nucleo 99.0 3.3E-10 1.1E-14 126.6 6.8 129 524-656 179-342 (353)
207 1zcb_A G alpha I/13; GTP-bindi 98.9 1.3E-09 4.5E-14 122.1 8.9 154 500-657 156-352 (362)
208 2j37_W Signal recognition part 98.9 2.2E-09 7.6E-14 125.1 8.5 162 489-654 99-309 (504)
209 1u0l_A Probable GTPase ENGC; p 98.9 2.5E-09 8.5E-14 116.2 7.5 132 506-652 32-167 (301)
210 2xtz_A Guanine nucleotide-bind 98.8 5E-09 1.7E-13 117.1 5.8 156 500-657 132-344 (354)
211 1azs_C GS-alpha; complex (lyas 98.6 1.8E-08 6.1E-13 114.6 6.2 129 525-657 204-384 (402)
212 2ohf_A Protein OLA1, GTP-bindi 98.6 3.7E-08 1.3E-12 111.8 7.9 88 488-577 19-128 (396)
213 3ec1_A YQEH GTPase; atnos1, at 98.6 2.1E-09 7.2E-14 120.4 -2.6 123 491-620 162-301 (369)
214 3h2y_A GTPase family protein; 98.5 4.1E-09 1.4E-13 118.1 -3.3 111 491-608 160-287 (368)
215 2yv5_A YJEQ protein; hydrolase 98.5 7.8E-08 2.7E-12 104.8 5.3 92 552-652 66-163 (302)
216 3l82_B F-box only protein 4; T 98.4 3.6E-07 1.2E-11 96.0 8.8 99 551-654 111-219 (227)
217 1tq4_A IIGP1, interferon-induc 98.4 3.5E-06 1.2E-10 96.1 16.7 164 485-655 63-250 (413)
218 2qag_B Septin-6, protein NEDD5 98.4 3.2E-07 1.1E-11 105.0 7.9 117 489-608 38-190 (427)
219 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.7E-06 6E-11 98.0 9.6 87 489-577 18-127 (392)
220 2v3c_C SRP54, signal recogniti 98.3 4.5E-07 1.5E-11 103.9 4.7 159 490-652 98-305 (432)
221 1xe1_A Hypothetical protein PF 98.2 2.5E-06 8.5E-11 81.4 8.9 80 885-970 34-115 (116)
222 3sop_A Neuronal-specific septi 98.2 2.8E-06 9.6E-11 91.3 10.4 113 492-608 3-154 (270)
223 3l2o_B F-box only protein 4; s 98.2 2.6E-06 8.9E-11 93.3 9.4 101 550-655 195-305 (312)
224 1puj_A YLQF, conserved hypothe 98.2 3.3E-06 1.1E-10 91.3 9.9 101 546-656 3-104 (282)
225 3dm5_A SRP54, signal recogniti 98.1 6.4E-06 2.2E-10 94.8 10.6 146 490-649 99-282 (443)
226 3h2y_A GTPase family protein; 98.0 5.9E-06 2E-10 92.5 7.6 97 551-655 55-157 (368)
227 3ec1_A YQEH GTPase; atnos1, at 98.0 8.1E-06 2.8E-10 91.4 8.6 97 551-655 57-159 (369)
228 3kl4_A SRP54, signal recogniti 98.0 1.1E-05 3.9E-10 92.5 9.2 145 490-648 96-280 (433)
229 1f5n_A Interferon-induced guan 98.0 9.4E-06 3.2E-10 96.5 8.7 100 487-590 34-145 (592)
230 1puj_A YLQF, conserved hypothe 97.9 9.3E-06 3.2E-10 87.8 6.4 58 488-552 117-175 (282)
231 1j8m_F SRP54, signal recogniti 97.9 0.0001 3.6E-09 80.3 14.1 145 490-649 97-282 (297)
232 3cnl_A YLQF, putative uncharac 97.7 1.3E-05 4.5E-10 85.7 2.9 91 549-653 4-96 (262)
233 3cnl_A YLQF, putative uncharac 97.5 4.9E-05 1.7E-09 81.3 4.3 55 492-553 100-155 (262)
234 2c78_A Elongation factor TU-A; 97.5 0.00091 3.1E-08 75.3 14.7 183 785-967 80-305 (405)
235 2elf_A Protein translation elo 97.5 0.0011 3.7E-08 74.3 15.0 180 785-968 65-275 (370)
236 1d2e_A Elongation factor TU (E 97.5 0.0023 7.9E-08 71.9 17.7 182 785-967 71-287 (397)
237 3e70_C DPA, signal recognition 97.4 0.00047 1.6E-08 76.3 10.7 146 489-648 127-310 (328)
238 3szr_A Interferon-induced GTP- 97.3 0.00048 1.7E-08 82.0 10.3 67 542-608 147-228 (608)
239 1r5b_A Eukaryotic peptide chai 97.2 0.0016 5.4E-08 75.1 12.5 179 785-967 126-353 (467)
240 3j2k_7 ERF3, eukaryotic polype 97.2 0.004 1.4E-07 71.2 15.7 180 784-967 99-324 (439)
241 1zun_B Sulfate adenylate trans 97.1 0.0018 6.2E-08 73.6 11.4 181 785-968 109-324 (434)
242 2yhs_A FTSY, cell division pro 97.1 0.0043 1.5E-07 72.4 14.2 145 489-648 291-480 (503)
243 2xxa_A Signal recognition part 97.1 0.00072 2.5E-08 77.5 7.5 63 541-606 183-252 (433)
244 1jny_A EF-1-alpha, elongation 97.0 0.0043 1.5E-07 70.6 13.4 180 785-967 89-314 (435)
245 1rj9_A FTSY, signal recognitio 97.0 0.0088 3E-07 65.4 14.9 144 490-648 101-289 (304)
246 1zu4_A FTSY; GTPase, signal re 97.0 0.0084 2.9E-07 66.0 14.7 93 541-648 191-296 (320)
247 1t9h_A YLOQ, probable GTPase E 97.0 0.00048 1.6E-08 75.7 4.8 81 562-651 83-170 (307)
248 2px0_A Flagellar biosynthesis 96.9 0.0077 2.6E-07 65.5 14.0 25 488-512 102-126 (296)
249 1s0u_A EIF-2-gamma, translatio 96.9 0.018 6.2E-07 64.8 17.2 183 785-967 86-311 (408)
250 3q5d_A Atlastin-1; G protein, 96.9 0.0021 7.1E-08 74.1 9.6 97 491-589 67-192 (447)
251 1kk1_A EIF2gamma; initiation o 96.9 0.016 5.5E-07 65.2 16.7 178 786-967 89-313 (410)
252 3avx_A Elongation factor TS, e 96.8 0.014 4.8E-07 74.2 16.4 182 785-967 364-578 (1289)
253 3p26_A Elongation factor 1 alp 96.7 0.025 8.7E-07 65.2 16.9 180 784-967 115-359 (483)
254 1vma_A Cell division protein F 96.7 0.022 7.7E-07 62.3 15.6 93 541-648 186-291 (306)
255 3e1y_E Eukaryotic peptide chai 96.6 0.0056 1.9E-07 63.3 9.4 75 889-967 10-86 (204)
256 4dzz_A Plasmid partitioning pr 96.6 0.012 4.1E-07 58.5 11.1 79 541-622 75-158 (206)
257 3mca_A HBS1, elongation factor 96.5 0.0083 2.8E-07 71.3 11.1 93 872-967 391-486 (592)
258 2ffh_A Protein (FFH); SRP54, s 96.5 0.01 3.6E-07 67.9 11.3 144 490-648 97-279 (425)
259 1f60_A Elongation factor EEF1A 96.4 0.016 5.5E-07 66.6 12.2 181 785-968 90-326 (458)
260 2rcn_A Probable GTPase ENGC; Y 96.3 0.0073 2.5E-07 67.8 8.3 83 563-651 128-212 (358)
261 3izq_1 HBS1P, elongation facto 96.2 0.03 1E-06 66.8 13.3 180 785-967 250-493 (611)
262 1ls1_A Signal recognition part 96.1 0.012 4.1E-07 63.8 8.5 93 541-648 180-279 (295)
263 3sjy_A Translation initiation 95.9 0.024 8.2E-07 63.7 10.2 81 887-967 202-305 (403)
264 3cwq_A Para family chromosome 95.8 0.047 1.6E-06 55.6 11.1 81 540-622 66-149 (209)
265 1bif_A 6-phosphofructo-2-kinas 95.7 0.0025 8.4E-08 73.2 1.3 114 489-605 37-160 (469)
266 1wb1_A Translation elongation 95.0 0.024 8.1E-07 65.6 6.5 177 785-966 78-280 (482)
267 2yv5_A YJEQ protein; hydrolase 94.7 0.079 2.7E-06 57.5 9.3 22 491-512 165-186 (302)
268 4ido_A Atlastin-1; GTPase, GTP 94.6 0.097 3.3E-06 60.6 9.9 97 492-590 68-193 (457)
269 3cb4_D GTP-binding protein LEP 93.9 0.37 1.3E-05 57.5 13.3 179 786-968 77-276 (599)
270 2ywe_A GTP-binding protein LEP 93.8 0.46 1.6E-05 56.7 13.9 178 786-968 79-278 (600)
271 1t9h_A YLOQ, probable GTPase E 93.7 0.017 6E-07 63.4 1.4 24 491-514 173-196 (307)
272 2rcn_A Probable GTPase ENGC; Y 93.1 0.053 1.8E-06 60.8 4.0 27 490-516 214-240 (358)
273 3end_A Light-independent proto 92.6 0.2 6.7E-06 53.6 7.5 65 541-606 156-225 (307)
274 3tau_A Guanylate kinase, GMP k 92.2 0.088 3E-06 53.4 3.9 28 487-514 4-31 (208)
275 1dar_A EF-G, elongation factor 92.2 0.43 1.5E-05 57.7 10.4 70 897-968 321-391 (691)
276 2bbw_A Adenylate kinase 4, AK4 92.1 0.085 2.9E-06 54.7 3.8 28 485-512 21-48 (246)
277 3zvl_A Bifunctional polynucleo 92.1 0.23 7.9E-06 56.2 7.6 91 489-605 256-346 (416)
278 1kgd_A CASK, peripheral plasma 92.0 0.095 3.2E-06 51.9 3.8 25 490-514 4-28 (180)
279 3tr0_A Guanylate kinase, GMP k 92.0 0.094 3.2E-06 52.0 3.8 25 490-514 6-30 (205)
280 2h5e_A Peptide chain release f 92.0 0.19 6.5E-06 59.0 6.9 66 898-968 312-381 (529)
281 2ph1_A Nucleotide-binding prot 91.7 0.39 1.3E-05 50.3 8.3 67 540-606 127-194 (262)
282 1u0l_A Probable GTPase ENGC; p 91.7 0.11 3.6E-06 56.3 4.1 25 491-515 169-193 (301)
283 1lvg_A Guanylate kinase, GMP k 91.6 0.079 2.7E-06 53.5 2.8 23 491-513 4-26 (198)
284 2rdo_7 EF-G, elongation factor 91.6 0.73 2.5E-05 55.9 11.6 70 897-968 329-399 (704)
285 1ye8_A Protein THEP1, hypothet 91.4 0.1 3.5E-06 52.3 3.4 22 493-514 2-23 (178)
286 3c8u_A Fructokinase; YP_612366 91.2 0.096 3.3E-06 53.0 2.9 26 489-514 20-45 (208)
287 1znw_A Guanylate kinase, GMP k 91.2 0.12 4.2E-06 52.1 3.7 26 489-514 18-43 (207)
288 1uf9_A TT1252 protein; P-loop, 91.2 0.11 3.8E-06 51.3 3.3 30 485-514 2-31 (203)
289 1zp6_A Hypothetical protein AT 91.2 0.12 4E-06 50.9 3.4 25 490-514 8-32 (191)
290 3a00_A Guanylate kinase, GMP k 91.1 0.1 3.4E-06 51.9 2.9 23 492-514 2-24 (186)
291 2j41_A Guanylate kinase; GMP, 91.0 0.14 4.7E-06 50.8 3.8 26 490-515 5-30 (207)
292 1g7s_A Translation initiation 91.0 0.62 2.1E-05 55.5 9.9 109 861-972 205-330 (594)
293 2xex_A Elongation factor G; GT 90.7 0.6 2E-05 56.5 9.6 70 897-968 321-391 (693)
294 3asz_A Uridine kinase; cytidin 90.6 0.13 4.3E-06 51.6 3.2 24 490-513 5-28 (211)
295 1cke_A CK, MSSA, protein (cyti 90.5 0.16 5.5E-06 51.3 3.8 24 490-513 4-27 (227)
296 3t61_A Gluconokinase; PSI-biol 90.3 0.15 5E-06 51.0 3.3 27 487-513 14-40 (202)
297 1s96_A Guanylate kinase, GMP k 90.2 0.17 5.7E-06 52.6 3.7 27 488-514 13-39 (219)
298 2c95_A Adenylate kinase 1; tra 90.2 0.15 5.1E-06 50.1 3.2 27 487-513 5-31 (196)
299 1z6g_A Guanylate kinase; struc 89.9 0.15 5.3E-06 52.2 3.1 26 489-514 21-46 (218)
300 3lw7_A Adenylate kinase relate 89.9 0.18 6.1E-06 47.8 3.3 20 492-511 2-21 (179)
301 4eun_A Thermoresistant glucoki 89.7 0.2 6.7E-06 50.3 3.7 24 490-513 28-51 (200)
302 1kag_A SKI, shikimate kinase I 89.5 0.18 6.2E-06 48.7 3.1 23 491-513 4-26 (173)
303 3tr5_A RF-3, peptide chain rel 89.4 0.83 2.8E-05 53.6 9.1 68 897-966 310-378 (528)
304 3ney_A 55 kDa erythrocyte memb 89.3 0.23 8E-06 51.2 3.9 25 490-514 18-42 (197)
305 3uie_A Adenylyl-sulfate kinase 89.1 0.22 7.7E-06 49.9 3.6 27 488-514 22-48 (200)
306 2qor_A Guanylate kinase; phosp 89.1 0.2 6.9E-06 50.3 3.2 26 489-514 10-35 (204)
307 4gp7_A Metallophosphoesterase; 89.1 0.19 6.6E-06 49.4 3.0 23 490-512 8-30 (171)
308 3tif_A Uncharacterized ABC tra 88.8 0.24 8.2E-06 51.8 3.6 27 488-514 28-54 (235)
309 1ly1_A Polynucleotide kinase; 88.7 0.23 7.8E-06 47.9 3.1 22 492-513 3-24 (181)
310 2rhm_A Putative kinase; P-loop 88.4 0.26 8.8E-06 48.3 3.3 24 490-513 4-27 (193)
311 2pcj_A ABC transporter, lipopr 88.2 0.26 8.9E-06 51.1 3.4 26 489-514 28-53 (224)
312 1knq_A Gluconate kinase; ALFA/ 88.2 0.28 9.4E-06 47.7 3.4 23 491-513 8-30 (175)
313 3aez_A Pantothenate kinase; tr 88.1 0.25 8.4E-06 54.1 3.3 26 488-513 87-112 (312)
314 1htw_A HI0065; nucleotide-bind 88.1 0.27 9.1E-06 48.6 3.2 27 489-515 31-57 (158)
315 2v54_A DTMP kinase, thymidylat 88.1 0.33 1.1E-05 48.0 3.9 25 490-514 3-27 (204)
316 2bdt_A BH3686; alpha-beta prot 88.1 0.27 9.1E-06 48.5 3.3 21 493-513 4-24 (189)
317 3kb2_A SPBC2 prophage-derived 88.0 0.29 9.8E-06 46.8 3.3 22 492-513 2-23 (173)
318 2onk_A Molybdate/tungstate ABC 88.0 0.27 9.3E-06 51.7 3.4 23 492-514 25-47 (240)
319 2cbz_A Multidrug resistance-as 87.9 0.29 1E-05 51.2 3.6 26 489-514 29-54 (237)
320 1b0u_A Histidine permease; ABC 87.8 0.29 1E-05 52.0 3.6 26 489-514 30-55 (262)
321 3trf_A Shikimate kinase, SK; a 87.8 0.31 1.1E-05 47.6 3.5 23 491-513 5-27 (185)
322 1nn5_A Similar to deoxythymidy 87.7 0.36 1.2E-05 48.0 4.0 25 489-513 7-31 (215)
323 1kht_A Adenylate kinase; phosp 87.6 0.32 1.1E-05 47.3 3.5 23 491-513 3-25 (192)
324 1np6_A Molybdopterin-guanine d 87.5 0.34 1.2E-05 48.7 3.7 24 491-514 6-29 (174)
325 1mv5_A LMRA, multidrug resista 87.5 0.27 9.3E-06 51.5 3.1 26 489-514 26-51 (243)
326 2wwf_A Thymidilate kinase, put 87.5 0.36 1.2E-05 48.0 3.8 25 489-513 8-32 (212)
327 3vaa_A Shikimate kinase, SK; s 87.4 0.35 1.2E-05 48.4 3.7 25 489-513 23-47 (199)
328 2pze_A Cystic fibrosis transme 87.4 0.32 1.1E-05 50.6 3.5 26 489-514 32-57 (229)
329 2jeo_A Uridine-cytidine kinase 87.4 0.3 1E-05 50.7 3.3 25 489-513 23-47 (245)
330 2ehv_A Hypothetical protein PH 87.4 0.35 1.2E-05 49.1 3.8 25 489-513 28-52 (251)
331 1g6h_A High-affinity branched- 87.4 0.32 1.1E-05 51.5 3.5 26 489-514 31-56 (257)
332 2pt7_A CAG-ALFA; ATPase, prote 87.3 2.3 7.8E-05 46.7 10.4 25 490-514 170-194 (330)
333 2ghi_A Transport protein; mult 87.3 0.34 1.1E-05 51.5 3.6 26 489-514 44-69 (260)
334 2qt1_A Nicotinamide riboside k 87.3 0.34 1.2E-05 48.5 3.5 26 489-514 19-44 (207)
335 4e22_A Cytidylate kinase; P-lo 87.2 0.37 1.3E-05 50.5 3.8 27 487-513 23-49 (252)
336 3lnc_A Guanylate kinase, GMP k 87.2 0.25 8.7E-06 50.5 2.6 26 489-514 25-51 (231)
337 4a74_A DNA repair and recombin 87.2 0.32 1.1E-05 48.8 3.2 25 489-513 23-47 (231)
338 2d2e_A SUFC protein; ABC-ATPas 87.1 0.37 1.3E-05 50.8 3.8 26 489-514 27-52 (250)
339 1tev_A UMP-CMP kinase; ploop, 87.0 0.31 1.1E-05 47.4 3.0 24 490-513 2-25 (196)
340 2olj_A Amino acid ABC transpor 87.0 0.35 1.2E-05 51.6 3.6 26 489-514 48-73 (263)
341 3b85_A Phosphate starvation-in 86.9 0.27 9.2E-06 50.7 2.6 25 490-514 21-45 (208)
342 1qhx_A CPT, protein (chloramph 86.9 0.41 1.4E-05 46.3 3.8 23 491-513 3-25 (178)
343 1ji0_A ABC transporter; ATP bi 86.8 0.36 1.2E-05 50.6 3.5 26 489-514 30-55 (240)
344 2zu0_C Probable ATP-dependent 86.8 0.4 1.4E-05 51.1 3.9 26 489-514 44-69 (267)
345 2plr_A DTMP kinase, probable t 86.8 0.36 1.2E-05 47.8 3.3 24 490-513 3-26 (213)
346 2ff7_A Alpha-hemolysin translo 86.7 0.36 1.2E-05 50.9 3.5 26 489-514 33-58 (247)
347 1vpl_A ABC transporter, ATP-bi 86.7 0.38 1.3E-05 51.2 3.6 26 489-514 39-64 (256)
348 2ixe_A Antigen peptide transpo 86.6 0.39 1.3E-05 51.4 3.6 26 489-514 43-68 (271)
349 4g1u_C Hemin import ATP-bindin 86.6 0.37 1.2E-05 51.5 3.4 26 489-514 35-60 (266)
350 2chg_A Replication factor C sm 86.5 3 0.0001 40.5 9.8 23 491-513 38-60 (226)
351 2if2_A Dephospho-COA kinase; a 86.5 0.38 1.3E-05 47.9 3.4 22 492-513 2-23 (204)
352 1rz3_A Hypothetical protein rb 86.5 0.36 1.2E-05 48.5 3.2 25 489-513 20-44 (201)
353 2yz2_A Putative ABC transporte 86.5 0.39 1.3E-05 51.1 3.6 26 489-514 31-56 (266)
354 2jaq_A Deoxyguanosine kinase; 86.5 0.38 1.3E-05 47.2 3.4 21 493-513 2-22 (205)
355 3gfo_A Cobalt import ATP-bindi 86.3 0.38 1.3E-05 51.8 3.4 26 489-514 32-57 (275)
356 1y63_A LMAJ004144AAA protein; 86.2 0.47 1.6E-05 46.9 3.8 25 489-513 8-32 (184)
357 3tqc_A Pantothenate kinase; bi 86.2 0.37 1.3E-05 53.2 3.3 26 488-513 89-114 (321)
358 3cm0_A Adenylate kinase; ATP-b 86.2 0.32 1.1E-05 47.4 2.6 24 490-513 3-26 (186)
359 2v9p_A Replication protein E1; 86.0 0.43 1.5E-05 52.4 3.7 27 488-514 123-149 (305)
360 2i3b_A HCR-ntpase, human cance 86.0 0.33 1.1E-05 49.3 2.6 22 493-514 3-24 (189)
361 1sgw_A Putative ABC transporte 86.0 0.35 1.2E-05 50.1 2.9 26 489-514 33-58 (214)
362 2yvu_A Probable adenylyl-sulfa 86.0 0.43 1.5E-05 46.9 3.4 25 489-513 11-35 (186)
363 2dy1_A Elongation factor G; tr 85.9 0.78 2.7E-05 55.2 6.2 75 887-968 285-364 (665)
364 2qi9_C Vitamin B12 import ATP- 85.9 0.42 1.4E-05 50.6 3.5 26 489-514 24-49 (249)
365 3ec2_A DNA replication protein 85.8 0.39 1.3E-05 47.0 2.9 25 490-514 37-61 (180)
366 1aky_A Adenylate kinase; ATP:A 85.8 0.47 1.6E-05 48.0 3.6 24 490-513 3-26 (220)
367 1sq5_A Pantothenate kinase; P- 85.8 0.4 1.4E-05 51.9 3.3 25 489-513 78-102 (308)
368 2eyu_A Twitching motility prot 85.7 0.41 1.4E-05 50.9 3.3 25 489-513 23-47 (261)
369 1xjc_A MOBB protein homolog; s 85.7 0.49 1.7E-05 47.7 3.7 24 490-513 3-26 (169)
370 1nks_A Adenylate kinase; therm 85.7 0.43 1.5E-05 46.4 3.2 21 493-513 3-23 (194)
371 1odf_A YGR205W, hypothetical 3 85.7 0.4 1.4E-05 51.9 3.3 25 489-513 29-53 (290)
372 2ihy_A ABC transporter, ATP-bi 85.7 0.43 1.5E-05 51.4 3.5 26 489-514 45-70 (279)
373 3iij_A Coilin-interacting nucl 85.6 0.44 1.5E-05 46.5 3.2 24 490-513 10-33 (180)
374 2cdn_A Adenylate kinase; phosp 85.6 0.51 1.7E-05 47.0 3.7 26 488-513 17-42 (201)
375 2vli_A Antibiotic resistance p 85.6 0.35 1.2E-05 47.0 2.5 24 490-513 4-27 (183)
376 1zd8_A GTP:AMP phosphotransfer 85.5 0.47 1.6E-05 48.4 3.5 25 489-513 5-29 (227)
377 3kta_A Chromosome segregation 85.5 0.53 1.8E-05 45.9 3.7 23 491-513 26-48 (182)
378 1vht_A Dephospho-COA kinase; s 85.3 0.45 1.5E-05 48.0 3.3 24 490-513 3-26 (218)
379 2nq2_C Hypothetical ABC transp 85.3 0.46 1.6E-05 50.3 3.4 26 489-514 29-54 (253)
380 2bwj_A Adenylate kinase 5; pho 85.0 0.52 1.8E-05 46.3 3.5 24 490-513 11-34 (199)
381 1jjv_A Dephospho-COA kinase; P 84.9 0.51 1.8E-05 47.1 3.4 22 492-513 3-24 (206)
382 1ex7_A Guanylate kinase; subst 84.8 0.47 1.6E-05 48.3 3.1 21 494-514 4-24 (186)
383 2f1r_A Molybdopterin-guanine d 84.8 0.28 9.7E-06 49.1 1.4 23 492-514 3-25 (171)
384 2bbs_A Cystic fibrosis transme 84.7 0.53 1.8E-05 51.1 3.6 26 489-514 62-87 (290)
385 1ukz_A Uridylate kinase; trans 84.7 0.56 1.9E-05 46.6 3.6 25 489-513 13-37 (203)
386 1zak_A Adenylate kinase; ATP:A 84.7 0.49 1.7E-05 48.0 3.2 24 490-513 4-27 (222)
387 2pjz_A Hypothetical protein ST 84.5 0.47 1.6E-05 50.7 3.1 25 491-515 30-54 (263)
388 3bfv_A CAPA1, CAPB2, membrane 84.4 1.1 3.7E-05 47.7 5.9 66 541-607 191-257 (271)
389 1sxj_A Activator 1 95 kDa subu 84.4 3.1 0.00011 48.2 10.1 25 490-514 76-100 (516)
390 3izy_P Translation initiation 84.2 0.12 4E-06 61.0 -1.9 106 861-974 155-263 (537)
391 3r20_A Cytidylate kinase; stru 84.2 0.57 1.9E-05 49.4 3.5 27 487-513 5-31 (233)
392 3tlx_A Adenylate kinase 2; str 83.9 0.57 2E-05 48.8 3.4 26 488-513 26-51 (243)
393 2pez_A Bifunctional 3'-phospho 83.7 0.58 2E-05 45.7 3.1 24 490-513 4-27 (179)
394 1pzn_A RAD51, DNA repair and r 83.7 1.9 6.5E-05 47.7 7.6 26 489-514 129-154 (349)
395 2vp4_A Deoxynucleoside kinase; 83.6 0.44 1.5E-05 49.0 2.4 26 489-514 18-43 (230)
396 1jbk_A CLPB protein; beta barr 83.6 0.72 2.5E-05 43.9 3.7 25 490-514 42-66 (195)
397 2kjq_A DNAA-related protein; s 83.5 0.54 1.9E-05 45.6 2.8 25 490-514 35-59 (149)
398 3fb4_A Adenylate kinase; psych 83.3 0.65 2.2E-05 46.6 3.4 21 493-513 2-22 (216)
399 1nij_A Hypothetical protein YJ 83.1 0.45 1.5E-05 51.8 2.2 25 490-514 3-27 (318)
400 3a4m_A L-seryl-tRNA(SEC) kinas 83.1 0.6 2.1E-05 49.1 3.1 24 490-513 3-26 (260)
401 1wcv_1 SOJ, segregation protei 83.0 2.1 7.3E-05 44.4 7.3 65 541-607 111-182 (257)
402 2iyv_A Shikimate kinase, SK; t 83.0 0.57 1.9E-05 45.8 2.7 22 492-513 3-24 (184)
403 2w0m_A SSO2452; RECA, SSPF, un 82.9 0.79 2.7E-05 45.7 3.8 24 490-513 22-45 (235)
404 1qf9_A UMP/CMP kinase, protein 82.8 0.64 2.2E-05 45.1 3.0 23 491-513 6-28 (194)
405 3tui_C Methionine import ATP-b 82.8 0.75 2.6E-05 51.8 3.9 27 488-514 51-77 (366)
406 2yyz_A Sugar ABC transporter, 82.8 0.76 2.6E-05 51.4 4.0 26 489-514 27-52 (359)
407 3fvq_A Fe(3+) IONS import ATP- 82.7 0.76 2.6E-05 51.5 3.9 27 489-515 28-54 (359)
408 1z47_A CYSA, putative ABC-tran 82.7 0.66 2.3E-05 51.9 3.4 27 489-515 39-65 (355)
409 3nh6_A ATP-binding cassette SU 82.6 0.5 1.7E-05 51.8 2.3 26 489-514 78-103 (306)
410 3cio_A ETK, tyrosine-protein k 82.5 2.3 7.8E-05 45.9 7.5 66 541-607 213-279 (299)
411 3dl0_A Adenylate kinase; phosp 82.5 0.73 2.5E-05 46.3 3.4 21 493-513 2-22 (216)
412 1ak2_A Adenylate kinase isoenz 82.5 0.81 2.8E-05 46.9 3.8 27 487-513 12-38 (233)
413 2it1_A 362AA long hypothetical 82.5 0.79 2.7E-05 51.4 3.9 27 489-515 27-53 (362)
414 3b9q_A Chloroplast SRP recepto 82.4 0.66 2.2E-05 50.5 3.2 25 489-513 98-122 (302)
415 1lw7_A Transcriptional regulat 82.4 0.55 1.9E-05 51.8 2.6 24 491-514 170-193 (365)
416 3pfi_A Holliday junction ATP-d 82.3 3.2 0.00011 44.4 8.6 24 490-513 54-77 (338)
417 1g29_1 MALK, maltose transport 82.3 0.69 2.4E-05 52.0 3.4 27 489-515 27-53 (372)
418 3k9g_A PF-32 protein; ssgcid, 82.3 2.7 9.3E-05 43.6 7.7 77 541-620 144-222 (267)
419 1gtv_A TMK, thymidylate kinase 82.2 0.38 1.3E-05 47.9 1.2 21 493-513 2-22 (214)
420 2pbr_A DTMP kinase, thymidylat 82.1 0.79 2.7E-05 44.6 3.4 21 493-513 2-22 (195)
421 1v43_A Sugar-binding transport 82.0 0.84 2.9E-05 51.4 3.9 26 489-514 35-60 (372)
422 3vqt_A RF-3, peptide chain rel 81.9 2.3 8E-05 50.0 7.9 69 897-967 328-397 (548)
423 2pt5_A Shikimate kinase, SK; a 81.7 0.83 2.9E-05 43.7 3.3 21 493-513 2-22 (168)
424 3jvv_A Twitching mobility prot 81.6 0.73 2.5E-05 51.4 3.2 22 492-513 124-145 (356)
425 1via_A Shikimate kinase; struc 81.5 0.71 2.4E-05 44.9 2.7 21 493-513 6-26 (175)
426 4a1f_A DNAB helicase, replicat 81.4 1.5 5E-05 48.8 5.6 24 489-512 44-67 (338)
427 2gza_A Type IV secretion syste 81.4 0.73 2.5E-05 51.2 3.1 26 489-514 173-198 (361)
428 1uj2_A Uridine-cytidine kinase 81.4 0.77 2.6E-05 47.8 3.2 25 489-513 20-44 (252)
429 1f2t_A RAD50 ABC-ATPase; DNA d 81.3 0.81 2.8E-05 44.4 3.1 22 491-512 23-44 (149)
430 3rlf_A Maltose/maltodextrin im 81.3 0.91 3.1E-05 51.3 3.9 27 489-515 27-53 (381)
431 2npi_A Protein CLP1; CLP1-PCF1 81.3 0.72 2.5E-05 53.2 3.2 26 489-514 136-161 (460)
432 1g3q_A MIND ATPase, cell divis 81.2 1.7 5.9E-05 43.9 5.6 65 541-607 111-176 (237)
433 2f6r_A COA synthase, bifunctio 81.1 0.83 2.8E-05 48.8 3.3 26 487-512 71-96 (281)
434 1m7g_A Adenylylsulfate kinase; 81.0 0.85 2.9E-05 46.0 3.2 25 489-513 23-47 (211)
435 2z0h_A DTMP kinase, thymidylat 80.9 0.93 3.2E-05 44.4 3.4 21 493-513 2-22 (197)
436 2b8t_A Thymidine kinase; deoxy 80.9 2 6.8E-05 45.0 6.1 40 567-606 89-128 (223)
437 3umf_A Adenylate kinase; rossm 80.9 0.88 3E-05 47.4 3.4 25 489-513 27-51 (217)
438 3kjh_A CO dehydrogenase/acetyl 80.8 1 3.5E-05 45.5 3.8 63 542-606 132-195 (254)
439 1gvn_B Zeta; postsegregational 80.7 0.78 2.7E-05 49.3 3.0 24 490-513 32-55 (287)
440 2p5t_B PEZT; postsegregational 80.6 0.59 2E-05 48.8 2.0 25 489-513 30-54 (253)
441 2cvh_A DNA repair and recombin 80.6 1.1 3.8E-05 44.5 3.9 25 489-513 18-42 (220)
442 2ewv_A Twitching motility prot 80.5 0.82 2.8E-05 51.1 3.2 24 490-513 135-158 (372)
443 1e4v_A Adenylate kinase; trans 80.5 0.94 3.2E-05 45.7 3.4 21 493-513 2-22 (214)
444 1ixz_A ATP-dependent metallopr 80.4 0.97 3.3E-05 46.7 3.5 22 493-514 51-72 (254)
445 3be4_A Adenylate kinase; malar 80.4 0.93 3.2E-05 46.0 3.3 24 490-513 4-27 (217)
446 1cr0_A DNA primase/helicase; R 80.2 1.1 3.6E-05 47.6 3.8 27 488-514 32-58 (296)
447 3d31_A Sulfate/molybdate ABC t 80.1 0.75 2.6E-05 51.3 2.7 27 489-515 24-50 (348)
448 1e6c_A Shikimate kinase; phosp 80.1 0.85 2.9E-05 43.8 2.8 22 492-513 3-24 (173)
449 1in4_A RUVB, holliday junction 79.8 0.94 3.2E-05 49.3 3.3 25 490-514 50-74 (334)
450 3gd7_A Fusion complex of cysti 79.7 1.1 3.8E-05 50.7 3.9 26 489-514 45-70 (390)
451 3bos_A Putative DNA replicatio 79.7 1.1 3.9E-05 44.6 3.6 24 490-513 51-74 (242)
452 2oze_A ORF delta'; para, walke 79.6 3.2 0.00011 43.8 7.3 65 541-607 154-225 (298)
453 2p65_A Hypothetical protein PF 79.5 0.92 3.1E-05 43.3 2.7 25 490-514 42-66 (187)
454 2og2_A Putative signal recogni 79.2 0.95 3.2E-05 50.7 3.1 25 489-513 155-179 (359)
455 1q3t_A Cytidylate kinase; nucl 79.1 1.3 4.4E-05 45.6 3.9 25 489-513 14-38 (236)
456 2oap_1 GSPE-2, type II secreti 79.1 0.93 3.2E-05 53.0 3.1 25 490-514 259-283 (511)
457 2x8a_A Nuclear valosin-contain 79.0 0.96 3.3E-05 48.2 3.0 21 493-513 46-66 (274)
458 4eaq_A DTMP kinase, thymidylat 79.0 1.1 3.8E-05 46.4 3.4 25 489-513 24-48 (229)
459 1hyq_A MIND, cell division inh 78.9 1.9 6.5E-05 44.5 5.1 64 541-606 110-174 (263)
460 1a7j_A Phosphoribulokinase; tr 78.9 0.71 2.4E-05 49.8 1.9 25 489-513 3-27 (290)
461 1oxx_K GLCV, glucose, ABC tran 78.8 0.71 2.4E-05 51.5 2.0 27 489-515 29-55 (353)
462 1n0w_A DNA repair protein RAD5 78.8 1.3 4.3E-05 44.8 3.7 25 489-513 22-46 (243)
463 3ake_A Cytidylate kinase; CMP 78.4 1.3 4.3E-05 43.8 3.5 22 492-513 3-24 (208)
464 2w58_A DNAI, primosome compone 78.3 1.3 4.5E-05 43.9 3.6 23 491-513 54-76 (202)
465 2vhj_A Ntpase P4, P4; non- hyd 78.3 2.7 9.2E-05 46.8 6.3 23 492-514 124-146 (331)
466 3q9l_A Septum site-determining 78.3 1.5 5.3E-05 44.8 4.2 64 541-606 113-185 (260)
467 1p9r_A General secretion pathw 78.3 1.1 3.6E-05 51.2 3.2 25 490-514 166-190 (418)
468 2obl_A ESCN; ATPase, hydrolase 78.2 1.2 4.2E-05 49.4 3.6 26 489-514 69-94 (347)
469 1iy2_A ATP-dependent metallopr 78.0 1.3 4.4E-05 46.6 3.5 22 493-514 75-96 (278)
470 2ze6_A Isopentenyl transferase 77.5 1.2 4.2E-05 46.7 3.2 21 493-513 3-23 (253)
471 3la6_A Tyrosine-protein kinase 77.4 3.6 0.00012 44.2 6.9 66 541-607 201-267 (286)
472 1njg_A DNA polymerase III subu 77.1 1.5 5E-05 43.1 3.5 23 491-513 45-67 (250)
473 1zuh_A Shikimate kinase; alpha 77.1 1.4 4.7E-05 42.5 3.2 22 492-513 8-29 (168)
474 2xb4_A Adenylate kinase; ATP-b 76.9 1.4 4.7E-05 45.1 3.3 21 493-513 2-22 (223)
475 3sr0_A Adenylate kinase; phosp 76.9 1.4 4.9E-05 45.2 3.4 21 493-513 2-22 (206)
476 2z43_A DNA repair and recombin 76.8 4.3 0.00015 44.0 7.4 25 489-513 105-129 (324)
477 1hqc_A RUVB; extended AAA-ATPa 76.7 6 0.00021 41.8 8.4 24 490-513 37-60 (324)
478 3qf7_A RAD50; ABC-ATPase, ATPa 76.6 1.3 4.4E-05 49.2 3.3 21 492-512 24-44 (365)
479 1ltq_A Polynucleotide kinase; 76.6 1.2 4.2E-05 47.0 3.0 22 492-513 3-24 (301)
480 3euj_A Chromosome partition pr 76.2 1.3 4.5E-05 51.6 3.2 22 492-513 30-51 (483)
481 3b60_A Lipid A export ATP-bind 76.2 1.4 4.8E-05 51.9 3.6 26 489-514 367-392 (582)
482 3nwj_A ATSK2; P loop, shikimat 76.1 1.3 4.5E-05 46.9 3.0 23 491-513 48-70 (250)
483 1p5z_B DCK, deoxycytidine kina 76.0 0.91 3.1E-05 47.4 1.7 28 487-514 20-47 (263)
484 1lv7_A FTSH; alpha/beta domain 75.9 1.7 5.9E-05 44.8 3.8 23 491-513 45-67 (257)
485 3b5x_A Lipid A export ATP-bind 75.8 1.5 5.2E-05 51.6 3.7 26 489-514 367-392 (582)
486 1yqt_A RNAse L inhibitor; ATP- 75.7 1.6 5.5E-05 51.2 3.9 27 488-514 44-70 (538)
487 2ocp_A DGK, deoxyguanosine kin 75.6 1.5 5.1E-05 45.1 3.1 25 490-514 1-25 (241)
488 1svm_A Large T antigen; AAA+ f 75.5 1.7 5.8E-05 49.0 3.8 26 488-513 166-191 (377)
489 2axn_A 6-phosphofructo-2-kinas 75.4 0.67 2.3E-05 54.2 0.5 111 489-605 33-156 (520)
490 3qks_A DNA double-strand break 74.9 1.7 5.7E-05 44.2 3.3 23 490-512 22-44 (203)
491 2dpy_A FLII, flagellum-specifi 74.8 1.7 5.7E-05 49.9 3.6 26 489-514 155-180 (438)
492 2h92_A Cytidylate kinase; ross 74.5 1.6 5.3E-05 43.9 2.9 24 490-513 2-25 (219)
493 1nlf_A Regulatory protein REPA 74.4 1.9 6.5E-05 45.4 3.7 25 489-513 28-52 (279)
494 3ozx_A RNAse L inhibitor; ATP 74.4 1.5 5.3E-05 51.4 3.3 25 490-514 24-48 (538)
495 1byi_A Dethiobiotin synthase; 74.2 8.3 0.00028 38.5 8.2 80 541-620 108-193 (224)
496 2yl4_A ATP-binding cassette SU 74.1 1.4 4.8E-05 52.1 2.8 26 489-514 368-393 (595)
497 2orw_A Thymidine kinase; TMTK, 73.9 5.5 0.00019 39.8 6.8 39 567-605 76-114 (184)
498 3ea0_A ATPase, para family; al 73.8 4.2 0.00014 41.1 6.0 65 541-607 118-185 (245)
499 1fnn_A CDC6P, cell division co 73.8 1.9 6.4E-05 46.6 3.5 23 492-514 45-67 (389)
500 3j16_B RLI1P; ribosome recycli 73.6 2 6.9E-05 51.3 4.0 26 489-514 101-126 (608)
No 1
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=2.4e-97 Score=860.41 Aligned_cols=477 Identities=50% Similarity=0.824 Sum_probs=427.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.|+++|+||||+|||||||+++|++..+...+.+|+|++++.+.+. ..+..++|||||||+.|..++.+++..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~----~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE----TENGMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC----TTSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE----ECCEEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 5889999999999999999999998877777889999999876643 234679999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|||||+++++++|+.+++.++...++|+|+++||+|+.+++.+++..++...++..+.|+++++++++||++|.||++|
T Consensus 78 aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 99999999999999999999999999999999999999877766666666666666777877899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee-------------------
Q 001915 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------- 709 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------- 709 (996)
|++|...+++.+++.++.+++.+.|++++.++++|++++++|++|+|++||.++++..+++
T Consensus 158 le~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~ 237 (501)
T 1zo1_I 158 LDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI 237 (501)
T ss_dssp HHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSS
T ss_pred hhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCC
Confidence 9999876655667778888899999999999999999999999999999999998886665
Q ss_pred ---EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEec
Q 001915 710 ---IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 786 (996)
Q Consensus 710 ---V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaD 786 (996)
+.||.++|.+||.|.++.+++.|+++++.|.+..++..+... ...++++++..+..+ +.+++++|||||
T Consensus 238 ~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~---~~~~l~~~~~~~~~~-----~~~~~~~ivkad 309 (501)
T 1zo1_I 238 PVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQ---QKSKLENMFANMTEG-----EVHEVNIVLKAD 309 (501)
T ss_dssp CSSSEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHH---HHHHHSSTTTSCSSC-----CCCCCCCBCCCS
T ss_pred cEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhh---hhhcHHHHHhhhhcc-----CCceEEEEEEEC
Confidence 567888899999999999999999887766554443332221 123455554433322 356899999999
Q ss_pred ccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001915 787 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 866 (996)
Q Consensus 787 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Lid 866 (996)
++||+|||.++|.+|++++++++|+|++||+||++||++|++++|+||||||+++++++++|+++||+|++|+|||||||
T Consensus 310 ~~gs~ea~~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~ 389 (501)
T 1zo1_I 310 VQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLID 389 (501)
T ss_dssp CHHHHHHHHHHHTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHH
T ss_pred CcCCHHHHHHHHHhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHcCCEEEEeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccc
Q 001915 867 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 945 (996)
Q Consensus 867 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~ 945 (996)
|++++|+++|+|.++|+++|+|+|+++|+. +.|.||||+|++|+|++|+++||+|||++||+|+|.||||||+||+||+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~ 469 (501)
T 1zo1_I 390 EVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR 469 (501)
T ss_dssp HTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEE
T ss_pred HHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEEC
Confidence 999999999999999999999999999996 5699999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEccCCCCCCCCEEEEEEEEEeehh
Q 001915 946 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRT 977 (996)
Q Consensus 946 ~G~ECGI~i~~f~d~~~GD~ie~y~~~~~~~~ 977 (996)
+|+||||.|++|+||++||+||||++++++|+
T Consensus 470 ~g~ecgi~~~~~~~~~~gd~~~~~~~~~~~~~ 501 (501)
T 1zo1_I 470 NGMECGIGVKNYNDVRTGDVIEVFEIIEIQRT 501 (501)
T ss_dssp TTCCEEEEBCCCTTCCTTCEEEECCCTTTSCC
T ss_pred CCCEEEEEEcCcCCCCCCCEEEEEEEEEecCC
Confidence 99999999999999999999999999888774
No 2
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.4e-95 Score=849.68 Aligned_cols=479 Identities=44% Similarity=0.670 Sum_probs=425.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.|+|+|+||||+|||||||+++|++..+...+.+++|++++++.+.+. .+..++|||||||+.|..++.+++..+|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP---SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS---CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC---CCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence 478999999999999999999999988888888999999988776532 34579999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|||||++++.++|+.+++.++...++|+|||+||+|+++.+.+++..++..+++..+.|+++++++++||++|.||++|
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 99999999999999999999999999999999999999887777777777777887888888899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccccee-------------------
Q 001915 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGK------------------- 709 (996)
Q Consensus 649 ~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~gk------------------- 709 (996)
+++|..+++..++..++..++.+.|++++.++++|++++++|.+|+|++||.+++|..+++
T Consensus 159 le~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~ 238 (537)
T 3izy_P 159 AEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSM 238 (537)
T ss_dssp HHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCST
T ss_pred HHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCC
Confidence 9999988877777778888999999999999999999999999999999999998877665
Q ss_pred ---EeeccccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCc--------cc----hhhHH
Q 001915 710 ---IIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAG-----------DGK--------VT----LSSLA 763 (996)
Q Consensus 710 ---V~Gl~g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~-----------~~~--------~~----l~~l~ 763 (996)
+.||+++|.+||.|.++++++.||+++++|.+..+...+..... ... ++ +..++
T Consensus 239 ~V~i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (537)
T 3izy_P 239 PVGIIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKY 318 (537)
T ss_dssp TCCCCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCEEEecCChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhh
Confidence 46777889999999999999999999988877766554332100 000 00 01111
Q ss_pred HHHh---c---CcccCCCcceeEEEEEecccchHHHHHHHHHhCCC-CCeeEEEEEcccCcCChhhHHHHHhcCCEEEEe
Q 001915 764 SAVS---A---GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQ-DNVTLKFLLQATGDISASDVDLAVASKAIILGF 836 (996)
Q Consensus 764 ~~~~---~---~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~-~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~F 836 (996)
.... . ......+.+++|+||||||+||+|||.++|.+|++ ++++++|+|++||+||++||++|.+++|+||||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~f 398 (537)
T 3izy_P 319 REKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGF 398 (537)
T ss_dssp HHHHHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEES
T ss_pred hhhhhhhhccchhhcccccceeeEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEe
Confidence 1110 0 00111245799999999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeecC----CceEEEEEEeeceEe
Q 001915 837 NVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG----SGRVAGCMVSEGKLV 912 (996)
Q Consensus 837 nv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~----~g~IaGc~V~~G~i~ 912 (996)
||+++++++++|+++||+|++|+|||+|||||+++|+++|+|.++|+++|+|+|+++|..+ .|+||||+|++|+|+
T Consensus 399 nv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~ 478 (537)
T 3izy_P 399 NVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIE 478 (537)
T ss_dssp SCCBCHHHHHHHHHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEE
T ss_pred cCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEe
Confidence 9999999999999999999999999999999999999999999999999999999999854 579999999999999
Q ss_pred eCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEcc-CCCCCCCCEEEEEE
Q 001915 913 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD-YDDLEEGDIIEAFN 970 (996)
Q Consensus 913 ~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~-f~d~~~GD~ie~y~ 970 (996)
+|+++||+|||++||+|+|.||||||+||+||++|+||||+|++ |+||++||+||||+
T Consensus 479 ~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie~~~ 537 (537)
T 3izy_P 479 KQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICYE 537 (537)
T ss_dssp SSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSCCCEEEEEC
T ss_pred eCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcccCCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999 99999999999996
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3e-81 Score=739.27 Aligned_cols=455 Identities=32% Similarity=0.515 Sum_probs=381.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee---------C-----CccccEEEEeCCCccc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV---------D-----GKLQPCVFLDTPGHEA 554 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i---------d-----gk~~~ItfIDTPGhE~ 554 (996)
.|+++|+||||+|||||||+++|++..+...+.+++|++++.+.+.... . .....++|||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4789999999999999999999998777666677899999887765321 0 0112499999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC-CCh--------------h-------
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANP--------------E------- 612 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~-a~~--------------e------- 612 (996)
|..++.++++.+|++|||||+++|+++|+.+.+.++...++|+|+|+||+|+.. +.. +
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999953 221 1
Q ss_pred ----HHHHHHHhcCCCCC------CCCCCCcEEEeccCCCCChhhHHHHHHHHHHH-H--hhhcCCCCCCcceEEEEeee
Q 001915 613 ----RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL-Q--ELKANPHRNAKGTVIEAGLH 679 (996)
Q Consensus 613 ----rv~~eL~~~gl~~e------~~gg~ipvVeISAktGeGIdEL~eaIl~lael-~--elk~~p~r~~~g~Vies~~d 679 (996)
++..++...++..+ .++..++++++||++|.||++|+++|..+.+. . .+..+++.++.+.|+++..+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 22334444444322 23456799999999999999999999876642 2 45567788999999999999
Q ss_pred cCCCcEEEEEEEcCEeccCcEEEEcccce----eEe-----------------------------------eccccccCC
Q 001915 680 KSKGPVATFILQNGTLKKGDVVVCGEAFG----KII-----------------------------------GLNGVPIAG 720 (996)
Q Consensus 680 kgrG~Vat~lV~~GtLk~GD~VviG~~~g----kV~-----------------------------------Gl~g~P~aG 720 (996)
+++|++++++|++|+|++||.+++++..+ ++. ||+++ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCC
Confidence 99999999999999999999999876544 211 23343 689
Q ss_pred CeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHh
Q 001915 721 DEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQV 800 (996)
Q Consensus 721 d~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~ 800 (996)
|.|.++++++++++.. .+ .+. ++ .++.+.+++|||||++||+|||.++|.+
T Consensus 322 d~l~~~~~~~~~~~~~------~~--~~~-----------~~----------~~~~~~~~~~vkad~~gs~eal~~~l~~ 372 (594)
T 1g7s_A 322 SPLRVVTDPEKVREEI------LS--EIE-----------DI----------KIDTDEAGVVVKADTLGSLEAVVKILRD 372 (594)
T ss_dssp CEEEECSSHHHHHHHH------HH--HHH-----------TT----------SCBCSSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CEEEecCCHHHHHHHH------HH--HHH-----------hc----------ccccccccEEEEeCCCCCHHHHHHHHHh
Confidence 9999999884443311 01 110 00 0124678999999999999999999998
Q ss_pred CCCCCeeEEEEEcccCcCChhhHHHHHhc------CCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHHc
Q 001915 801 LPQDNVTLKFLLQATGDISASDVDLAVAS------KAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 874 (996)
Q Consensus 801 l~~~~v~i~ii~~~VG~ItesDV~lA~as------~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~~~ 874 (996)
+ +++|+|++||+||++||++|+++ +|+||||||+++++++++|+++||+|++|+|||+||||++++|++
T Consensus 373 ~-----~~~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~ 447 (594)
T 1g7s_A 373 M-----YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRG 447 (594)
T ss_dssp T-----TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHH
T ss_pred C-----CCcEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHHHHHHHHcCCeEEECCHHHHHHHHHHHHhhh
Confidence 7 57889999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccceee---eeEEeEEEE----EEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccC
Q 001915 875 LLETVEEQ---VPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAG 947 (996)
Q Consensus 875 ~l~~~~~e---~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G 947 (996)
+|+|.+++ .++|+|+++ +||+.++|.||||+|++|+|++|+++|+ |+|. |+|+|.||||+|+||+||++|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~g 524 (594)
T 1g7s_A 448 IEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASRG 524 (594)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEETT
T ss_pred ccchhhhhhhheeeeeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhcccCccccccCCC
Confidence 99998654 467777775 8999888999999999999999999999 9995 999999999999999999999
Q ss_pred ceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHH
Q 001915 948 LECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEA 981 (996)
Q Consensus 948 ~ECGI~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~ 981 (996)
+||||.|++| +||++||+||||...+..+.|++.
T Consensus 525 ~e~gi~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~ 561 (594)
T 1g7s_A 525 QKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHILKEQ 561 (594)
T ss_dssp CCEEEEEETCCBTTTBCTTCEEEECCCHHHHHTTTSC
T ss_pred CEEEEEEeCcccCCCCCCCCEEEEEEEhHHHHHHHHH
Confidence 9999999997 899999999999999999998853
No 4
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=99.98 E-value=2.8e-33 Score=258.97 Aligned_cols=98 Identities=42% Similarity=0.767 Sum_probs=93.3
Q ss_pred eeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC
Q 001915 880 EEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD 958 (996)
Q Consensus 880 ~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~ 958 (996)
++|+++|+|+|+++|+. +.|+||||+|++|+|++++.+||+|||.+||+|+|+|||||||||+||++|+||||.|++||
T Consensus 1 ~~E~~~G~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~~ 80 (99)
T 1d1n_A 1 YEEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN 80 (99)
T ss_dssp CCCCEEEEEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCS
T ss_pred CeEEEEEEEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCcC
Confidence 36789999999999995 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEEEeehh
Q 001915 959 DLEEGDIIEAFNSIQRKRT 977 (996)
Q Consensus 959 d~~~GD~ie~y~~~~~~~~ 977 (996)
||++||+||||++++++|+
T Consensus 81 dik~GD~Ie~ye~~ev~r~ 99 (99)
T 1d1n_A 81 DIKEGDVIEAYVMQEVARA 99 (99)
T ss_dssp SCSSCSEEEEECCSCCCC-
T ss_pred CCCCCCEEEEEEEEEEcCC
Confidence 9999999999999998874
No 5
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.98 E-value=6.1e-33 Score=264.49 Aligned_cols=103 Identities=24% Similarity=0.523 Sum_probs=98.4
Q ss_pred ccceeeeeEEeEEEEEEeec-CCce---EEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEE
Q 001915 877 ETVEEQVPIGSAEVRAIFSS-GSGR---VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGV 952 (996)
Q Consensus 877 ~~~~~e~~~G~A~V~~vF~~-~~g~---IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI 952 (996)
.|..+|+++|+|+|+++|+. +.|+ ||||+|++|+|++++.+||+|||++||+|+|.|||||||||+||++|+||||
T Consensus 2 ~~~~~E~v~G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 2 SSGSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGL 81 (120)
T ss_dssp CCSCSSCEEEEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEE
T ss_pred CCCcEEEEEEEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEE
Confidence 46788999999999999985 4577 9999999999999999999999999999999999999999999999999999
Q ss_pred EEccCC-CCCCCCEEEEEEEEEeehhHH
Q 001915 953 GAADYD-DLEEGDIIEAFNSIQRKRTLE 979 (996)
Q Consensus 953 ~i~~f~-d~~~GD~ie~y~~~~~~~~l~ 979 (996)
.|++|| ||++||+||||++++++|+|+
T Consensus 82 ~l~~fniDik~GDiIE~ye~~ev~r~l~ 109 (120)
T 2crv_A 82 SLDEEKVEFKPGDQVICYEENKVPTKTS 109 (120)
T ss_dssp ECSCTTSCCCTTEEEEEECCSCCCCCCC
T ss_pred EEccCCCCCCCCCEEEEEEEEEEeeEec
Confidence 999999 999999999999999999985
No 6
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.97 E-value=2e-30 Score=306.62 Aligned_cols=446 Identities=21% Similarity=0.258 Sum_probs=306.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeceEEEEEee-CCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va---------------~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE 553 (996)
+.++|+|+||+|||||||+++|+..... .....|+|.......+.+.. ++..+.++|||||||+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3468999999999999999999752111 11235677665555554432 4556789999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~i 632 (996)
.|..++.+++..+|++|||||++++++.|+.+.+..+...++|+|+|+||+|+..++.+++..++... ++. ..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------PE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC------GG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC------cc
Confidence 99999999999999999999999999999999999998899999999999999888877777776653 221 13
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccce----
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFG---- 708 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~g---- 708 (996)
+++++||++|.||++||++|.... ......++.++.+.|+++..++++|.+++++|.+|+|++||.|++...-.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l--p~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v 236 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI--PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEV 236 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEEC
T ss_pred cEEEEEeecCCCchHHHHHHHHhc--ccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEee
Confidence 589999999999999999987532 22233456678889999999999999999999999999999998865321
Q ss_pred -eEeecc------ccccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCC--Cccee
Q 001915 709 -KIIGLN------GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGL--DLHQL 779 (996)
Q Consensus 709 -kV~Gl~------g~P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~l 779 (996)
++.-+. ....+||...++...+..++ ...|+.-...+. .....+.++ ..+.+
T Consensus 237 ~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~---------------~~~GDtl~~~~~----~~~~~l~~~~~~~P~v 297 (600)
T 2ywe_A 237 TEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRD---------------IRIGDTITHAKN----PTKEPVPGFQPAKPMV 297 (600)
T ss_dssp CEEEEESSSEEEESCEETTCEEEEESSCCCTTS---------------SCTTCEEEESSS----CCSSCCSCCCCCCCCE
T ss_pred ecccccCCCceECCEEecCceeeeeccccchhh---------------ccCCCEEEeCCC----ccccccCCCCCCCcEE
Confidence 122111 11358997766533211100 111111100000 000011111 23567
Q ss_pred EEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhH------HhHHHhcCc
Q 001915 780 NVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSV------KTYADNKGV 853 (996)
Q Consensus 780 ~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~------~~~A~~~~V 853 (996)
...+.+...+..+.|.++|.+|..+++.+++.. .++.+++.||++.....+ .++.++.|+
T Consensus 298 ~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--------------et~~~l~~g~~~~~~G~lHlei~~erl~re~~~ 363 (600)
T 2ywe_A 298 YAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--------------ESSPALGMGFRVGFLGLLHMEIVQERLEREYGV 363 (600)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--------------EEETTTEEEEEEEESSHHHHHHHHHHHHHHSCC
T ss_pred EEEeeccccccHHHHHHHHHHHhhhCCEEEEEE--------------CCccccccceEEEeccHHHHHHHHHHHHhhcCc
Confidence 788888889999999999999999999887642 356688999999877764 334455699
Q ss_pred eEEEec--hHhHHH-H-HHH--------------HHHHcccccceeeeeEEeEEEEE-----Ee---ecCCceEEEEEEe
Q 001915 854 EIRLYR--VIYDLI-D-DMR--------------NAMEGLLETVEEQVPIGSAEVRA-----IF---SSGSGRVAGCMVS 907 (996)
Q Consensus 854 ~I~~~~--IIY~Li-d-dik--------------~~~~~~l~~~~~e~~~G~A~V~~-----vF---~~~~g~IaGc~V~ 907 (996)
++.... |+|+-. . +=+ ..+..+|+|..+-++ .+.+ |. +...|.+.|+...
T Consensus 364 ~v~~~~P~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i----~vP~e~~G~v~~~~~~rrG~~~~~~~~ 439 (600)
T 2ywe_A 364 KIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTI----ITPKEYVGPIIQLCQEKRGIQKNMTYL 439 (600)
T ss_dssp CEEECCCEECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEE----EEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEeeeEEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEE----EecHHHHHHHHHHHHHcCcEEeccEEc
Confidence 988875 888741 1 000 111223333332221 1221 22 2467999999875
Q ss_pred eceEeeCCcEEEeeCCEEEEEEEEeee-ecccccccccccCce-eEEEEccCCCC--------CCCCEEEEEEEEEeehh
Q 001915 908 EGKLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGLE-CGVGAADYDDL--------EEGDIIEAFNSIQRKRT 977 (996)
Q Consensus 908 ~G~i~~~~~vrviR~g~vi~~G~I~SL-k~~k~dV~ev~~G~E-CGI~i~~f~d~--------~~GD~ie~y~~~~~~~~ 977 (996)
.| ..+ .+.|.--++.| ..|.++++.+..|+- +-..|.+|... .-|+.|.++..+--+..
T Consensus 440 ~~-----~~~------~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~~~~~~~~~~~ 508 (600)
T 2ywe_A 440 DP-----NTV------YLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVDALSFIVHADR 508 (600)
T ss_dssp ET-----TEE------EEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCGGGCEEEEGGG
T ss_pred CC-----CEE------EEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEeccchhhhhhHH
Confidence 54 112 24577788999 899999999999985 77888888766 47888888887777766
Q ss_pred HHHHHHHHHHhhhc
Q 001915 978 LEEASASMASALEG 991 (996)
Q Consensus 978 l~~~~~~~~~~~~~ 991 (996)
-..-.+.+...|++
T Consensus 509 ~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 509 AQKFARRVAEKLRE 522 (600)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
No 7
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=99.96 E-value=1e-31 Score=261.97 Aligned_cols=133 Identities=37% Similarity=0.585 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEE
Q 001915 730 DVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLK 809 (996)
Q Consensus 730 ~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ 809 (996)
-+||++++.|.. |...+ .....++|++++..+..+ +.+++|+||||||+||+|||.++|.+|++++|+++
T Consensus 3 ~ea~~ia~~R~~--r~~~~---~~~~~~~Le~l~~~i~~~-----~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~ 72 (135)
T 1z9b_A 3 FELGTRGSSRVD--LQEQR---SVKTRVSLDDLFEQIKQG-----EMKELNLIVKADVQGSVEALVAALQKIDVEGVRVK 72 (135)
T ss_dssp SCCCCCTTTTSC--CCSCS---SCSSCCSCCCCCCCCCCC-----SSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEE
T ss_pred hhHHHHHHHHHH--HHHHH---HhhccCCHHHHHHHHhcc-----CcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEE
Confidence 356667766654 22221 123466788877665544 35799999999999999999999999999999999
Q ss_pred EEEcccCcCChhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHH
Q 001915 810 FLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAM 872 (996)
Q Consensus 810 ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~~~~A~~~~V~I~~~~IIY~Liddik~~~ 872 (996)
|+|+|||+||++||++|.+++|+||||||+++++++++|+++||+|++|+|||+|||||+++|
T Consensus 73 Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~a~~~A~~~gV~I~~~~IIY~liddv~~~m 135 (135)
T 1z9b_A 73 IIHAAVGAITESDISLATASNAIVIGFNVRPDANAKRAAESEKVDIRLHRIIYNVIEEIEAAM 135 (135)
T ss_dssp EEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTTHHHHHHTTTCCCEECTTCCCCSCCCSCC-
T ss_pred EEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999998765
No 8
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.95 E-value=1.7e-27 Score=281.69 Aligned_cols=445 Identities=22% Similarity=0.277 Sum_probs=294.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc---------------ccccCCceeeeceEEEEEee-CCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va---------------~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE 553 (996)
+..+|+|+||+|||||||+++|+..... .....|+|.......+.+.. ++..+.++|||||||+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4468999999999999999999853211 11234666655444444332 4556789999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCCCCCCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~e~~gg~i 632 (996)
.|..++.+++..+|++|||||++++++.|+.+.+..+...++|+|+++||+|+.+++.+++..++... ++. ..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------AT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC------CT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999999998899999999999999888877777766553 221 13
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcccc-----
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAF----- 707 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~~----- 707 (996)
+++++||++|.||++|+++|.... ......++.++.+.|+++..++++|.++++.|.+|+|+.||.+.+...-
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l--p~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v 234 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI--PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNA 234 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEEC
T ss_pred eEEEeecccCCCchhHHHHHhhcC--CCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEE
Confidence 589999999999999999987542 2223345678888999999999999999999999999999999876531
Q ss_pred eeEeec--ccc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCC--Cccee
Q 001915 708 GKIIGL--NGV----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGL--DLHQL 779 (996)
Q Consensus 708 gkV~Gl--~g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~l 779 (996)
.++.-+ ... ..+||...++...+..++ ...|+.-...++ .....+.++ ..+.+
T Consensus 235 ~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~---------------~~~GDtl~~~~~----~~~~~l~~~~~~~P~v 295 (599)
T 3cb4_D 235 DRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHG---------------APVGDTLTLARN----PAEKALPGFKKVKPQV 295 (599)
T ss_dssp CEEEEESSSEEECSEECTTCEEEEECCCSSGGG---------------SCTTCEEEESSS----CCSSCCTTCCCCCCCE
T ss_pred eeeeeccCCceECCEEcCCCeeEeecccccccc---------------CccCCEeeecCC----ccccccccccCCCcce
Confidence 112211 111 258997766533211110 111211111000 000001111 23566
Q ss_pred EEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChhH------HhHHHhcCc
Q 001915 780 NVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSV------KTYADNKGV 853 (996)
Q Consensus 780 ~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~~------~~~A~~~~V 853 (996)
...+-+...+..+.+.++|.+|..+++.+.+. ..++.+++.||.+.....+ .++-++.|+
T Consensus 296 ~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~ 361 (599)
T 3cb4_D 296 YAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQERLEREYDL 361 (599)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCC
T ss_pred EEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHHHHHHHcCc
Confidence 67777777788999999999999888888754 2356788999999877763 234445588
Q ss_pred eEEEec--hHhHHH--H-------HHH-----HHHHcccccceeeeeEEeEEEEEEe--------ecCCceEEEEEEeec
Q 001915 854 EIRLYR--VIYDLI--D-------DMR-----NAMEGLLETVEEQVPIGSAEVRAIF--------SSGSGRVAGCMVSEG 909 (996)
Q Consensus 854 ~I~~~~--IIY~Li--d-------dik-----~~~~~~l~~~~~e~~~G~A~V~~vF--------~~~~g~IaGc~V~~G 909 (996)
++.... |+|+-. + +-. ..+..+|+|..+- +..+.+-| +...|.+.|..-..|
T Consensus 362 ~~~~~~P~V~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~----~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~ 437 (599)
T 3cb4_D 362 DLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAEC----HMLLPQAYLGNVITLCVEKRGVQTNMVYHGN 437 (599)
T ss_dssp CEEECCCEECEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEE----EEEEEGGGHHHHHHHHHHTTCEEEEEECCTT
T ss_pred eEEEEeeeEEEEEEecCCceEEecChhhCCCccccchhhccceEE----EEEeCHHHHHHHHHHHHHcCcEEeCcEecCC
Confidence 888775 888641 1 000 0000122222221 12222222 236788888766432
Q ss_pred eEeeCCcEEEeeCCEEEEEEEEeee-ecccccccccccCc-eeEEEEccCCCC--------CCCCEEEEEEEEEeehhHH
Q 001915 910 KLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGL-ECGVGAADYDDL--------EEGDIIEAFNSIQRKRTLE 979 (996)
Q Consensus 910 ~i~~~~~vrviR~g~vi~~G~I~SL-k~~k~dV~ev~~G~-ECGI~i~~f~d~--------~~GD~ie~y~~~~~~~~l~ 979 (996)
.+ .+.|.--++.| ..|-++.+.+..|+ .+-..|.+|... .-|+.|.++..+--+..-.
T Consensus 438 ------~~------~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 505 (599)
T 3cb4_D 438 ------QV------ALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQ 505 (599)
T ss_dssp ------EE------EEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEEEEEEEEGGGHH
T ss_pred ------eE------EEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecccceeccHHHHH
Confidence 11 13466677888 89999999999997 355566666655 4788999999887777777
Q ss_pred HHHHHHHHhhhc
Q 001915 980 EASASMASALEG 991 (996)
Q Consensus 980 ~~~~~~~~~~~~ 991 (996)
.-.+.+...|++
T Consensus 506 ~~~~~~~~~~~~ 517 (599)
T 3cb4_D 506 NRGRELVEKMKD 517 (599)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777764
No 9
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=1.6e-25 Score=252.54 Aligned_cols=212 Identities=27% Similarity=0.364 Sum_probs=150.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEEee-------------C--Cc----cccEEEE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPV-------------D--GK----LQPCVFL 547 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i~i-------------d--gk----~~~ItfI 547 (996)
..++|+++||+|||||||+++|.+.. +.....+|+|+++++....+.. . +. ...++||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45789999999999999999998543 3344457899988766554421 1 11 2679999
Q ss_pred eCCCccchHHHHHHhhhcCCeEEEEEecCCCC-ChhHHHHHHHHHHcCC-CEEEEecccCCCCCCh-hHHHHHHHhcCCC
Q 001915 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANP-ERVMQELSSIGLM 624 (996)
Q Consensus 548 DTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~-erv~~eL~~~gl~ 624 (996)
|||||+.|..++.+++..+|++|||||++++. ++|+.+++..+...++ |+|+|+||+|+.+.+. ....+++..+ .
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~--l 164 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF--V 164 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH--H
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999998 9999999988887776 6999999999975432 1222222221 0
Q ss_pred CCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeee--------cCCCcEEEEEEEcCEec
Q 001915 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSKGPVATFILQNGTLK 696 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~d--------kgrG~Vat~lV~~GtLk 696 (996)
...+...++++++||++|.||++|+++|.... .......+.++...|.+++.. +++|+++++.|.+|+|+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i--~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFI--PTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC--CCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 11123457999999999999999999987432 122223345667777776533 35899999999999999
Q ss_pred cCcEEEEcc
Q 001915 697 KGDVVVCGE 705 (996)
Q Consensus 697 ~GD~VviG~ 705 (996)
+||.|.+.+
T Consensus 243 ~gd~v~~~p 251 (408)
T 1s0u_A 243 VGDEIEIRP 251 (408)
T ss_dssp TTCEEEEEE
T ss_pred cCCEEEEcC
Confidence 999998865
No 10
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.94 E-value=6.1e-26 Score=259.13 Aligned_cols=209 Identities=27% Similarity=0.381 Sum_probs=154.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~i 537 (996)
....+|+++||+|||||||+++|++... ......|+|+++.++.+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 4567999999999999999999954311 1123367888876655443
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCC-------hhHHHHHHHHHHcCCC-EEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~-------~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a 609 (996)
.++.++|||||||+.|..++..++..+|++|||||++++.+ +|+.+++..+...++| +|+|+||+|+...
T Consensus 93 --~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 --EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred --CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 34689999999999999999999999999999999999886 7999999999999999 9999999999643
Q ss_pred Ch-----hHHHHHH----HhcCCCCCCCCCCCcEEEeccCCCCChhhHHHH--------HHHHHH-HHhhhcCCCCCCcc
Q 001915 610 NP-----ERVMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAE-LQELKANPHRNAKG 671 (996)
Q Consensus 610 ~~-----erv~~eL----~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ea--------Il~lae-l~elk~~p~r~~~g 671 (996)
+. +.+..++ ...++... .+++++++||++|.||+++++. |+.+.+ +.......+.++..
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~---~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~ 247 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPK---KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRL 247 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccc---CCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEE
Confidence 21 2222222 23333211 2478999999999999997662 222111 11111122345555
Q ss_pred eEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 672 ~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
.|.+++ ++.|++++++|.+|+|++||.|++++.
T Consensus 248 ~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~ 280 (439)
T 3j2k_7 248 PIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPN 280 (439)
T ss_pred EEEEEE--cCCCeEEEEEEEeeEEecCCEEEEccC
Confidence 565553 478999999999999999999999874
No 11
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.94 E-value=6.6e-26 Score=255.07 Aligned_cols=224 Identities=29% Similarity=0.349 Sum_probs=166.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC-------cc---------ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK-------VA---------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~-------va---------~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~ 554 (996)
..+|+++||+|||||||+++|++.. +. .....|+|++..... +....+.++|||||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE----YSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEE----EECSSCEEEEEECSSHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEE----eccCCeEEEEEECCChHH
Confidence 4689999999999999999998631 10 112467887764332 234457899999999999
Q ss_pred hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChh-------HHHHHHHhcCCCCC
Q 001915 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE-------RVMQELSSIGLMPE 626 (996)
Q Consensus 555 F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~e-------rv~~eL~~~gl~~e 626 (996)
|..++..++..+|++|||||++++.++|+.+++..+...++| +|+++||+|+.. +.+ ++...+..+++.
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~-- 155 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYK-- 155 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999999999889999 789999999964 221 222233333332
Q ss_pred CCCCCCcEEEeccCCCCC----------hhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEec
Q 001915 627 DWGGDIPMVQISALKGEK----------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (996)
Q Consensus 627 ~~gg~ipvVeISAktGeG----------IdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk 696 (996)
...++++++||++|.| |++|+++|..... ......+.++...|.+++.++++|++++++|.+|+|+
T Consensus 156 --~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p--~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~ 231 (397)
T 1d2e_A 156 --GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP--VPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILK 231 (397)
T ss_dssp --TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC--CCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEE
T ss_pred --cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC--CCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEe
Confidence 1247899999999875 7888888754211 1112233456667778888899999999999999999
Q ss_pred cCcEEEEccc----ceeEeecc------ccccCCCeEEE
Q 001915 697 KGDVVVCGEA----FGKIIGLN------GVPIAGDEFEV 725 (996)
Q Consensus 697 ~GD~VviG~~----~gkV~Gl~------g~P~aGd~~~v 725 (996)
+||.|++.+. ..+|.++. ....|||.+.+
T Consensus 232 ~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~ 270 (397)
T 1d2e_A 232 KGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGA 270 (397)
T ss_dssp TTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEE
T ss_pred CCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEE
Confidence 9999976442 34565553 22468887654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.93 E-value=1.3e-26 Score=267.77 Aligned_cols=212 Identities=28% Similarity=0.352 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC-------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRAR 561 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~-------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~r 561 (996)
.+.++|+++||+|||||||+++|.+.. .......|+|+++.+..+.+ .++.++|||||||+.|..++..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL----ENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE----TTEEEEECCCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE----CCEEEEEEECCChHHHHHHHHH
Confidence 356899999999999999999999766 33456678999887766654 3468999999999999999999
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
++..+|++|||||+++++++|+.+++..+...++|+|+|+||+|+.+.. .+.+..++...-.....+ ..++++++||+
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~ 171 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAK 171 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTT
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECc
Confidence 9999999999999999999999999999999999999999999996421 222333332210000011 14689999999
Q ss_pred CCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcc
Q 001915 641 KGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 641 tGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~ 705 (996)
+|.||++|+++|....++..+...++.++...|.+++..++.|+++++.|.+|+|++||.+.+.+
T Consensus 172 ~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp TCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTT
T ss_pred CCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECC
Confidence 99999999999987765442333444556666667777789999999999999999999998865
No 13
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.93 E-value=3.1e-25 Score=250.19 Aligned_cols=212 Identities=30% Similarity=0.402 Sum_probs=158.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC---ccccccCCceeeeceEEEEEee-------------C--Cc----cccEEEE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPV-------------D--GK----LQPCVFL 547 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~---va~se~gGiTqdI~a~~V~i~i-------------d--gk----~~~ItfI 547 (996)
..++|+++||+|||||||+++|++.. +.....+|+|+++++....+.. . +. ...++||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34689999999999999999998543 3344567899988766554421 0 11 2679999
Q ss_pred eCCCccchHHHHHHhhhcCCeEEEEEecCCCC-ChhHHHHHHHHHHcCC-CEEEEecccCCCCCCh-hHHHHHHHhcCCC
Q 001915 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANP-ERVMQELSSIGLM 624 (996)
Q Consensus 548 DTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~-erv~~eL~~~gl~ 624 (996)
|||||+.|..++.+++..+|++|||||+++++ ++|+.+++..+...++ |+|+|+||+|+...+. ....+++..+ .
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l 166 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF--I 166 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--H
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999998 9999999988887776 6999999999965321 1122222221 1
Q ss_pred CCCCCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEee--------ecCCCcEEEEEEEcCEec
Q 001915 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGL--------HKSKGPVATFILQNGTLK 696 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~--------dkgrG~Vat~lV~~GtLk 696 (996)
...+...++++++||++|.||++|+++|.... .........++...|.+++. ++++|.+++++|.+|+|+
T Consensus 167 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~--~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 244 (410)
T 1kk1_A 167 EGTVAENAPIIPISALHGANIDVLVKAIEDFI--PTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLK 244 (410)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEE
T ss_pred HhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC--CCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEe
Confidence 11123457999999999999999999987432 11122234456666766653 345899999999999999
Q ss_pred cCcEEEEcc
Q 001915 697 KGDVVVCGE 705 (996)
Q Consensus 697 ~GD~VviG~ 705 (996)
+||.+++.+
T Consensus 245 ~gd~v~~~p 253 (410)
T 1kk1_A 245 VGDEIEIRP 253 (410)
T ss_dssp TTCEEEEEE
T ss_pred eCCEEEECC
Confidence 999998865
No 14
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.93 E-value=1.8e-25 Score=251.81 Aligned_cols=225 Identities=32% Similarity=0.384 Sum_probs=164.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--------Cccc---------cccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT--------KVAA---------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s--------~va~---------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
..++|+++||+|||||||+++|++. .+.. ....|+|.+... +. ++.....++|||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~--~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH--VE--YETAKRHYSHVDCPGH 85 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEE--EE--EECSSCEEEEEECCCS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeee--eE--eccCCeEEEEEECCCh
Confidence 4578999999999999999999863 1110 113567766532 22 3344578999999999
Q ss_pred cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChh---H----HHHHHHhcCCC
Q 001915 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE---R----VMQELSSIGLM 624 (996)
Q Consensus 553 E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~e---r----v~~eL~~~gl~ 624 (996)
+.|..++.+++..+|++|||||++++.++|+.+++..+...++| +|+++||+|+.. +.+ . +...+..+++.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 899999999974 222 1 22223333331
Q ss_pred CCCCCCCCcEEEeccCCCCC------------------hhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEE
Q 001915 625 PEDWGGDIPMVQISALKGEK------------------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeG------------------IdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Va 686 (996)
..+++++++||++|.| +++|+++|..... ......+.++...|.+++.++++|+++
T Consensus 165 ----~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp--~p~~~~~~p~~~~v~~v~~~~~~G~v~ 238 (405)
T 2c78_A 165 ----GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP--TPVRDVDKPFLMPVEDVFTITGRGTVA 238 (405)
T ss_dssp ----TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC--CCCCCCSSCCEEECCEEEEETTTEEEE
T ss_pred ----ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC--CCCCCCCCCcEEEEEEEEEcCCCceEE
Confidence 1247899999999987 6666666543211 111123445666777888889999999
Q ss_pred EEEEEcCEeccCcEEEEccc-----ceeEeecc------ccccCCCeEEE
Q 001915 687 TFILQNGTLKKGDVVVCGEA-----FGKIIGLN------GVPIAGDEFEV 725 (996)
Q Consensus 687 t~lV~~GtLk~GD~VviG~~-----~gkV~Gl~------g~P~aGd~~~v 725 (996)
+++|.+|+|++||.|++.+. ..+|.++. ....|||.+.+
T Consensus 239 ~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~ 288 (405)
T 2c78_A 239 TGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGV 288 (405)
T ss_dssp EEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEE
T ss_pred EEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEE
Confidence 99999999999999987653 23455553 12357886644
No 15
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=3.2e-25 Score=215.88 Aligned_cols=173 Identities=66% Similarity=1.015 Sum_probs=144.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+.++|+|+|++|+|||||+++|.+..+.....+++|.++..+.+.+ ++ ..+.||||||++.|..++.+++..+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV--ND--KKITFLDTPGHEAFTTMRARGAQVT 79 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE--TT--EEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe--CC--ceEEEEECCCCHHHHHHHHHHHhhC
Confidence 4568899999999999999999999988887777777777766555443 33 5689999999999998888899999
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChh
Q 001915 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGId 646 (996)
|++|+|+|++++...++.+.+..+...++|+++|+||+|+...+.+++...+.........++..++++++||++|.||+
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 159 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLD 159 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHH
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHH
Confidence 99999999999988999988888877899999999999997766666666666655555556556789999999999999
Q ss_pred hHHHHHHHHHHHHhhhc
Q 001915 647 DLLETIMLVAELQELKA 663 (996)
Q Consensus 647 EL~eaIl~lael~elk~ 663 (996)
+|+++|........+..
T Consensus 160 ~l~~~l~~~~~~~~~~~ 176 (178)
T 2lkc_A 160 HLLEMILLVSEMEELKA 176 (178)
T ss_dssp HHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHhhhhhcccc
Confidence 99999988776655543
No 16
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.92 E-value=1e-23 Score=253.83 Aligned_cols=301 Identities=23% Similarity=0.291 Sum_probs=213.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEe---eCCccccEEEE
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVP---VDGKLQPCVFL 547 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~---idgk~~~ItfI 547 (996)
.+.++|+|+||+|||||||+++|+...... ....++|.......+.+. .++..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997431100 013566766555444332 12334789999
Q ss_pred eCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC-
Q 001915 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP- 625 (996)
Q Consensus 548 DTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~- 625 (996)
|||||..|..++.++++.+|++|+|||+++++..|+...+..+...++|+++++||+|+..++..++..++... +...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV 167 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999998899999999999999887776666665432 0000
Q ss_pred -----------------------CCC------------------------------------------------------
Q 001915 626 -----------------------EDW------------------------------------------------------ 628 (996)
Q Consensus 626 -----------------------e~~------------------------------------------------------ 628 (996)
..|
T Consensus 168 ~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~ 247 (704)
T 2rdo_7 168 PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE 247 (704)
T ss_pred eEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHH
Confidence 000
Q ss_pred -----------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHh------------------hhcCCCCCCcceEEEEeee
Q 001915 629 -----------GGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLH 679 (996)
Q Consensus 629 -----------gg~ipvVeISAktGeGIdEL~eaIl~lael~e------------------lk~~p~r~~~g~Vies~~d 679 (996)
+..+|+++.||+++.|++.|++.|.....-.. ...+++.++.+.|+++..+
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 11257999999999999999999986532111 1123566788899999999
Q ss_pred cCCCcEEEEEEEcCEeccCcEEEEccc-----ceeEeecc---cc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHH
Q 001915 680 KSKGPVATFILQNGTLKKGDVVVCGEA-----FGKIIGLN---GV----PIAGDEFEVVDSLDVAREKAEARAFSLRNER 747 (996)
Q Consensus 680 kgrG~Vat~lV~~GtLk~GD~VviG~~-----~gkV~Gl~---g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~ 747 (996)
+++|.++.++|.+|+|+.||.|+.... .++++-+. .. -.|||.+.+.. .+.+
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~g-l~~~--------------- 391 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIG-LKDV--------------- 391 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeC-cccC---------------
Confidence 999999999999999999999987642 12232222 12 25888877653 2111
Q ss_pred HHhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 748 ISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 748 i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
..|+.-.+.+.- ..+.. -.+..+.+.+.|.+...+..+.|.++|.+|..++..+++..
T Consensus 392 ---~~GdTl~~~~~~-~~l~~---~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~ 449 (704)
T 2rdo_7 392 ---TTGDTLCDPDAP-IILER---MEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWT 449 (704)
T ss_pred ---ccCCEEeCCCcc-cccCC---CCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 111110000000 00000 01234789999999999999999999999998888777664
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.92 E-value=9.1e-25 Score=251.78 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=155.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEe
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVP 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~ 536 (996)
.....+|+|+|++|+|||||+++|++... ......|+|.++..+.+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 107 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-- 107 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--
Confidence 34567999999999999999999975411 122335788887665543
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEecccCCCC
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-------v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~ 608 (996)
...+.++|||||||+.|..++..++..+|++|||||++++ +..|+.+++..+...+++ +|||+||+|+.+
T Consensus 108 --~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 108 --THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp --CSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred --cCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 3457899999999999999999999999999999999997 678999999999888865 999999999976
Q ss_pred CChhH---HHHHH----HhcCCCCCCCCCCCcEEEeccCCCCChhh---------------HHHHHHHHHHH-Hh--hhc
Q 001915 609 ANPER---VMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDD---------------LLETIMLVAEL-QE--LKA 663 (996)
Q Consensus 609 a~~er---v~~eL----~~~gl~~e~~gg~ipvVeISAktGeGIdE---------------L~eaIl~lael-~e--lk~ 663 (996)
++... +..++ ...++.. ..++++++||++|.||++ |++.|..+.+. .. ...
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~----~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~ 261 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFE----DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI 261 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCG----GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHcCCCc----ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc
Confidence 54322 22232 2333321 136899999999999986 34444333221 11 123
Q ss_pred CCCCCCcceEEEEeeec---CCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 664 NPHRNAKGTVIEAGLHK---SKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 664 ~p~r~~~g~Vies~~dk---grG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
..+.++...|.++.... +.|++++|+|.+|+|++||.|++++.
T Consensus 262 ~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~ 307 (483)
T 3p26_A 262 NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS 307 (483)
T ss_dssp CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETT
T ss_pred cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCC
Confidence 34566777777776655 68999999999999999999998874
No 18
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.92 E-value=1.7e-24 Score=242.50 Aligned_cols=205 Identities=21% Similarity=0.185 Sum_probs=154.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
+|+++||+|||||||+++|+ ..|+|+++.++.+ ...++.++|||||||++|..++..+++.+|++|||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~----~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNN----DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEE----CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEE----ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 89999999999999999997 4578888766543 33456799999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHHHHHcCCCE-EEEec-ccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEE--eccCC---CCC
Q 001915 573 VAADDGIRPQTNEAIAHAKAAGVPI-VIAIN-KIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQ--ISALK---GEK 644 (996)
Q Consensus 573 VDAsdgv~~Qt~E~I~~ak~~~IPI-IVVIN-KiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVe--ISAkt---GeG 644 (996)
|| +++.++|+.+++..+...++|. |+++| |+|+ +.. .+.+..++...-- ......+++++ +||++ |.|
T Consensus 91 vd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~--~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 91 IP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITS--GTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp EC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTT--TSTTTTCEEEECCCCTTSSSTTTT
T ss_pred Ec-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHH--hcCCCceEEEecccccccCcCCCC
Confidence 99 9999999999999999999997 99999 9999 422 1222333333210 00013478999 99999 999
Q ss_pred hhhHHHHHHHHHHHHhhhcC--CCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 645 VDDLLETIMLVAELQELKAN--PHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 645 IdEL~eaIl~lael~elk~~--p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
|++|+++|....+....... ...++...+.+++..+++|++++++|.+|+|++||.+++.+. ..+|.++
T Consensus 167 i~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i 239 (370)
T 2elf_A 167 VDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSI 239 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEE
Confidence 99999999876543211111 122334457777777899999999999999999999998763 2344444
No 19
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.1e-23 Score=237.37 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=152.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-ccCCceeee-------ceEEEEE-----ee---CCccccEEEEeCCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGI-------GAYKVQV-----PV---DGKLQPCVFLDTPG 551 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~s-e~gGiTqdI-------~a~~V~i-----~i---dgk~~~ItfIDTPG 551 (996)
....++|+++||+|||||||+++|.+...... .....|... ..+.... .+ ......++||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 34568999999999999999999987432210 000001000 0000000 00 01125799999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCC-ChhHHHHHHHHHHcCC-CEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANP-ERVMQELSSIGLMPEDW 628 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt~E~I~~ak~~~I-PIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~ 628 (996)
|+.|..++..++..+|++|||+|++++. ++|+.+++..+...+. |+|+|+||+|+.+.+. .....++... ....+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~~~~ 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF--TKGTW 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HTTST
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH--HHhhC
Confidence 9999999999999999999999999998 9999999998887776 8999999999965321 1222233221 11112
Q ss_pred CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecC--------CCcEEEEEEEcCEeccCcE
Q 001915 629 GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKS--------KGPVATFILQNGTLKKGDV 700 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkg--------rG~Vat~lV~~GtLk~GD~ 700 (996)
...++++++||++|.||++|+++|.... .......+.++...|.+++...+ +|+++++.|.+|+|++||.
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l--~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~ 240 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYI--KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQE 240 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCE
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCE
Confidence 3457999999999999999999987432 22233345566777777664433 8999999999999999999
Q ss_pred EEEccc
Q 001915 701 VVCGEA 706 (996)
Q Consensus 701 VviG~~ 706 (996)
|++++.
T Consensus 241 v~~~p~ 246 (403)
T 3sjy_A 241 IKVLPG 246 (403)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998653
No 20
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=2.6e-24 Score=244.76 Aligned_cols=228 Identities=25% Similarity=0.313 Sum_probs=156.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc---------------------------------cccCCceeeeceEEEEEe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVP 536 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~---------------------------------se~gGiTqdI~a~~V~i~ 536 (996)
...+|+++||+|||||||+++|++..... ....|+|+++.+..+.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-- 100 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-- 100 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE--
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee--
Confidence 34689999999999999999997543100 0124667766544432
Q ss_pred eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhH--
Q 001915 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER-- 613 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~er-- 613 (996)
.....++|||||||+.|..++..++..+|++|||||++++.++|+.+++..+...++| +|+|+||+|+.+++.++
T Consensus 101 --~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 101 --TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp --CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHH
T ss_pred --cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHH
Confidence 3456899999999999999999999999999999999999999999999988888886 99999999997655433
Q ss_pred -HHHHHHh----cCCCCCCCCCCCcEEEeccCCCCChhhHHHH--------HHHHHHHHhh-hcCCCCCCcceEEEEeee
Q 001915 614 -VMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAELQEL-KANPHRNAKGTVIEAGLH 679 (996)
Q Consensus 614 -v~~eL~~----~gl~~e~~gg~ipvVeISAktGeGIdEL~ea--------Il~lael~el-k~~p~r~~~g~Vies~~d 679 (996)
+..++.. .++. ...++++++||++|.||+++++. |..+.+.... ......++...|..+...
T Consensus 179 ~i~~~~~~~~~~~g~~----~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~ 254 (434)
T 1zun_B 179 SIKADYLKFAEGIAFK----PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRP 254 (434)
T ss_dssp HHHHHHHHHHHTTTCC----CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECS
T ss_pred HHHHHHHHHHHHhCCC----ccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEecc
Confidence 2233222 2210 12468999999999999985432 2211111111 111223444444444434
Q ss_pred cCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeeccc------cccCCCeEEE
Q 001915 680 KSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGLNG------VPIAGDEFEV 725 (996)
Q Consensus 680 kgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl~g------~P~aGd~~~v 725 (996)
.+.|..+.+.|.+|+|++||.|.+++. ..+|.++.. .-.+|+.+.+
T Consensus 255 ~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~ 308 (434)
T 1zun_B 255 NLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTL 308 (434)
T ss_dssp SSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEE
T ss_pred CCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEE
Confidence 456677889999999999999999763 455655421 1257776544
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.91 E-value=5.3e-25 Score=252.59 Aligned_cols=214 Identities=24% Similarity=0.367 Sum_probs=159.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeceEEEEEeeC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVPVD 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~--va-----------------------------~se~gGiTqdI~a~~V~i~id 538 (996)
..++|+++||+|||||||+++|++.. +. .....|+|+++.++.+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~---- 81 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE----
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe----
Confidence 34689999999999999999998531 10 01136889888776543
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCCh-------hHHHHHHHHHHcCCC-EEEEecccCCCCCC
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRP-------QTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~-------Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~ 610 (996)
...+.++|||||||+.|..++..++..+|++|||||++++.++ |+.+++..+...++| +|||+||+|+..++
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTC
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCC
Confidence 3456899999999999999999999999999999999998766 999999888888997 99999999997544
Q ss_pred hhH---HHHHH----HhcCCCCCCCCCCCcEEEeccCCCCChhhHHH--------------------HHHHHHHHHhhh-
Q 001915 611 PER---VMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDDLLE--------------------TIMLVAELQELK- 662 (996)
Q Consensus 611 ~er---v~~eL----~~~gl~~e~~gg~ipvVeISAktGeGIdEL~e--------------------aIl~lael~elk- 662 (996)
.++ +..++ ..+++.. .+++++++||++|.||+++.+ .|+.. +..+.
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~----~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~--l~~~~~ 235 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP----KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEA--IDAIEQ 235 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG----GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHH--HHTSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc----cCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHH--hhccCC
Confidence 432 22222 3333321 136899999999999986532 12221 22221
Q ss_pred --cCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 663 --ANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 663 --~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
...+.++...|.+++..++.|++++++|.+|+|++||.|.+.+. ..+|.++
T Consensus 236 p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i 290 (458)
T 1f60_A 236 PSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSV 290 (458)
T ss_dssp CCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEE
T ss_pred CcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEE
Confidence 12334566778888888999999999999999999999998763 3345444
No 22
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.6e-25 Score=264.65 Aligned_cols=217 Identities=22% Similarity=0.271 Sum_probs=140.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-------------------------------cccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-------------------------------a~se~gGiTqdI~a~~V~i~i 537 (996)
...++|+|+||+|||||||+++|+.... .....+|+|+++.+..+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 4556899999999999999999963211 1112457888876655443
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-----C--ChhHHHHHHHHHHcCCC-EEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-----I--RPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-----v--~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a 609 (996)
.++.++|||||||+.|..++..++..+|++|||||++++ + ++|+.+++..+...++| +|||+||||+..+
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTT
T ss_pred --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccc
Confidence 346899999999999999999999999999999999985 4 89999999999999998 9999999999775
Q ss_pred ChhH---HHHHHHhcCCCCCCC-CCCCcEEEeccCCCCChh--------------hHHHHHHHHHHHHhhhcCCCCCCcc
Q 001915 610 NPER---VMQELSSIGLMPEDW-GGDIPMVQISALKGEKVD--------------DLLETIMLVAELQELKANPHRNAKG 671 (996)
Q Consensus 610 ~~er---v~~eL~~~gl~~e~~-gg~ipvVeISAktGeGId--------------EL~eaIl~lael~elk~~p~r~~~g 671 (996)
+.++ +..++...-.....+ ...++++++||++|.||+ .|++.|..+. ......+.++..
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~---pp~~~~~~p~r~ 407 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV---PPEKPYRKPLRL 407 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC---CCSCTTTSCCEE
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc---cccccccccchh
Confidence 5443 233333211000011 124689999999999998 6777765321 112234456777
Q ss_pred eEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 672 ~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
.|.+++.. +.|++++|+|.+|+|++||.|++.+. ..+|.++
T Consensus 408 ~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i 450 (592)
T 3mca_A 408 SIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNV 450 (592)
T ss_dssp EEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEE
T ss_pred eeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEE
Confidence 88888888 99999999999999999999998653 2345444
No 23
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.91 E-value=3.3e-25 Score=254.90 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=138.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~--va-----------------------------~se~gGiTqdI~a~~V~i~i 537 (996)
...++|+++||+|||||||+++|+... +. .....|+|+++++..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 345689999999999999999997421 10 112457888877654432
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCC-------hhHHHHHHHHHHcCCC-EEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~-------~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a 609 (996)
.++.++|||||||+.|..++.+++..+|++|||||++++.+ +|+++++..+...++| +|||+||+|+...
T Consensus 119 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 119 --EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp --SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred --CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 34689999999999999999999999999999999999874 7999999999989998 9999999999643
Q ss_pred --ChhH-------HHHHHHhc-CCCCCCCCCCCcEEEeccCCCCChhhHHHH----------HHHHHHH-HhhhcCCCCC
Q 001915 610 --NPER-------VMQELSSI-GLMPEDWGGDIPMVQISALKGEKVDDLLET----------IMLVAEL-QELKANPHRN 668 (996)
Q Consensus 610 --~~er-------v~~eL~~~-gl~~e~~gg~ipvVeISAktGeGIdEL~ea----------Il~lael-~elk~~p~r~ 668 (996)
+.++ +...+... ++.. ..+++++++||++|.||+++++. |+...+. .......+.+
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~---~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p 273 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNS---KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAP 273 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCH---HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCc---cCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCC
Confidence 2222 22223333 3210 01468999999999999986631 2211111 1111122455
Q ss_pred CcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeecc
Q 001915 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGLN 714 (996)
Q Consensus 669 ~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl~ 714 (996)
+...|.+++ +++|++++++|.+|+|++||.|++++. ..+|.++.
T Consensus 274 ~~~~v~~~~--~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~ 319 (467)
T 1r5b_A 274 FIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIY 319 (467)
T ss_dssp CEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEE
T ss_pred cEEEEEEEE--eCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEe
Confidence 666666654 368999999999999999999998653 45566653
No 24
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.91 E-value=9.5e-24 Score=247.59 Aligned_cols=325 Identities=21% Similarity=0.283 Sum_probs=209.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc----------------------cccccCCceeeeceEEEEEeeCCccccEEE
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVF 546 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v----------------------a~se~gGiTqdI~a~~V~i~idgk~~~Itf 546 (996)
.|..+|+|+||+|||||||.++|+.... ......|||+......+ .| +++.|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~--~~--~~~~iNl 104 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF--PY--RDRVVNL 104 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE--EE--TTEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE--EE--CCEEEEE
Confidence 3567999999999999999999962111 11234567755444333 33 4578999
Q ss_pred EeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC
Q 001915 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP 625 (996)
Q Consensus 547 IDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~ 625 (996)
||||||.+|.....+.++.+|++|+|||+.+|+++||...|+++...++|.|+++||+|+..++..++..++... +...
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEE
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999988877776542 1000
Q ss_pred ----------------------------CC--------------------------------------------------
Q 001915 626 ----------------------------ED-------------------------------------------------- 627 (996)
Q Consensus 626 ----------------------------e~-------------------------------------------------- 627 (996)
..
T Consensus 185 ~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 264 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYL 264 (548)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHH
Confidence 00
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhh-------cCCCCCCcceEEEEeee---cCCCcEEEEEEEcCEecc
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAGLH---KSKGPVATFILQNGTLKK 697 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk-------~~p~r~~~g~Vies~~d---kgrG~Vat~lV~~GtLk~ 697 (996)
-+.-+|+++.||+++.||+.|++.|.....-..-. ...+.++.+.|+++..+ +.+|.++.++|.+|+|+.
T Consensus 265 ~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~ 344 (548)
T 3vqt_A 265 KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTR 344 (548)
T ss_dssp TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEET
T ss_pred hCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecC
Confidence 01125789999999999999999997553211100 01134567888887665 688999999999999999
Q ss_pred CcEEEEcccce-----eEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHH
Q 001915 698 GDVVVCGEAFG-----KIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASA 765 (996)
Q Consensus 698 GD~VviG~~~g-----kV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~ 765 (996)
|+.|+....-. +++-+.+ . -.|||.+.+..- +. ...|+ ++.+-.
T Consensus 345 g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl-~~------------------~~~GD---Tl~~~~-- 400 (548)
T 3vqt_A 345 GMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNH-GT------------------IKIGD---TFTESK-- 400 (548)
T ss_dssp TCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECS-SC------------------CCTTC---EEESSS--
T ss_pred CCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCC-cc------------------CccCC---EecCCC--
Confidence 99998754321 1222221 1 257887765431 00 11111 111000
Q ss_pred HhcCcccCC--CcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEe-cC-CCC
Q 001915 766 VSAGKLSGL--DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGF-NV-KAP 841 (996)
Q Consensus 766 ~~~~~~~~~--~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~F-nv-~~~ 841 (996)
......++ ..+.+.+-|.+...+..+.+.++|.+|..++. +.+.... .++-.||++ +- -..
T Consensus 401 -~~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~-------------et~e~il~g~GeLHLe 465 (548)
T 3vqt_A 401 -EVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPL-------------VNNDYILGAVGVLQFD 465 (548)
T ss_dssp -SCCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEES-------------SSCCCEEEESSTHHHH
T ss_pred -CccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEEC-------------CCCcEEEEEECHHHHH
Confidence 00011111 13567778888889999999999999865443 4444322 123334433 21 111
Q ss_pred hhHHhHHHhcCceEE
Q 001915 842 GSVKTYADNKGVEIR 856 (996)
Q Consensus 842 ~~~~~~A~~~~V~I~ 856 (996)
=-+.++.++.||++.
T Consensus 466 I~~erL~~ey~vev~ 480 (548)
T 3vqt_A 466 VIVARLADEYGVDAV 480 (548)
T ss_dssp HHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 123456667788765
No 25
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.91 E-value=1.7e-23 Score=251.37 Aligned_cols=298 Identities=25% Similarity=0.297 Sum_probs=183.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+.++|+|+||+|||||||+++|+...... ....++|++.....+. + ..+.++||||||
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~--~--~~~~i~liDTPG 86 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF--W--KDHRINIIDTPG 86 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE--E--TTEEEEEECCCS
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE--E--CCeEEEEEECcC
Confidence 45789999999999999999998321100 0134666665544433 2 357899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC------
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM------ 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~------ 624 (996)
|..|...+.+++..+|++|+|||++++...++...+..+...++|+++++||+|+...+..++..++... +..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~ 166 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 166 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceec
Confidence 9999999999999999999999999999999999999999999999999999999887777777666542 110
Q ss_pred ---------------------CC-CC------------------------------------------------------
Q 001915 625 ---------------------PE-DW------------------------------------------------------ 628 (996)
Q Consensus 625 ---------------------~e-~~------------------------------------------------------ 628 (996)
.. ..
T Consensus 167 Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 167 PIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp EESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 00 00
Q ss_pred ------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHh----------------hhcCCCCCCcceEEEEeeecCCCcEE
Q 001915 629 ------GGDIPMVQISALKGEKVDDLLETIMLVAELQE----------------LKANPHRNAKGTVIEAGLHKSKGPVA 686 (996)
Q Consensus 629 ------gg~ipvVeISAktGeGIdEL~eaIl~lael~e----------------lk~~p~r~~~g~Vies~~dkgrG~Va 686 (996)
+..+|+++.||++|.|++.|++.|.....-.. +..+++.++.+.|+++..++++|.++
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~ 326 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEE
T ss_pred HHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEE
Confidence 01157999999999999999999986542111 01135667889999999999999999
Q ss_pred EEEEEcCEeccCcEEEEccc-----ceeEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001915 687 TFILQNGTLKKGDVVVCGEA-----FGKIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGD 754 (996)
Q Consensus 687 t~lV~~GtLk~GD~VviG~~-----~gkV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~ 754 (996)
.++|.+|+|+.||.|+.... .++++-+.+ . -.|||.+.+.. .+.+ ..|+
T Consensus 327 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g-l~~~------------------~~Gd 387 (691)
T 1dar_A 327 FIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG-LKET------------------ITGD 387 (691)
T ss_dssp EEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEEC-CSSC------------------CTTC
T ss_pred EEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeC-cccC------------------ccCC
Confidence 99999999999999986542 222332321 1 24777776553 1110 1111
Q ss_pred Cc-------cchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEE---------EcccCcC
Q 001915 755 GK-------VTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFL---------LQATGDI 818 (996)
Q Consensus 755 ~~-------~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii---------~~~VG~I 818 (996)
.- ..+..+ .+..+.+.+.|.+...+..+.|.++|.+|..++..+++. .+|.|.+
T Consensus 388 tl~~~~~~~~~l~~~----------~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gel 457 (691)
T 1dar_A 388 TLVGEDAPRVILESI----------EVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGEL 457 (691)
T ss_dssp EEEETTCCCCBCC------------------------------------------CCCCSCEEEC-----CEEEEESCCC
T ss_pred EEecCCCcccccCCC----------CCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHH
Confidence 10 111111 012367888999999999999999999998888766554 3567766
Q ss_pred Ch
Q 001915 819 SA 820 (996)
Q Consensus 819 te 820 (996)
.-
T Consensus 458 hl 459 (691)
T 1dar_A 458 HL 459 (691)
T ss_dssp --
T ss_pred HH
Confidence 53
No 26
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.91 E-value=3.4e-24 Score=244.00 Aligned_cols=213 Identities=27% Similarity=0.427 Sum_probs=150.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccc-----------------------------ccccCCceeeeceEEEEEeeC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT--KVA-----------------------------AAEAGGITQGIGAYKVQVPVD 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s--~va-----------------------------~se~gGiTqdI~a~~V~i~id 538 (996)
...+|+++||+|||||||+++|+.. .+. .....|+|++...+.+ +
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~----~ 80 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF----E 80 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE----E
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE----e
Confidence 4578999999999999999999853 111 0114578877655443 3
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEecccCCCCC-
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA- 609 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-------v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a- 609 (996)
...+.++|||||||+.|..++.+++..+|++|||||++++ ++.|+.+++..+...++| +|+++||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 4557899999999999999999999999999999999998 888999999999888875 9999999999763
Q ss_pred -Chh---HHHHH----HHhcCCCCCCCCCCCcEEEeccCCCCChhhHHH--------HHHHHHHHHhhhcCC----CCCC
Q 001915 610 -NPE---RVMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE--------TIMLVAELQELKANP----HRNA 669 (996)
Q Consensus 610 -~~e---rv~~e----L~~~gl~~e~~gg~ipvVeISAktGeGIdEL~e--------aIl~lael~elk~~p----~r~~ 669 (996)
+.+ .+..+ +...++.. ..++++++||++|.||.++++ .|+.. +..+. .| ..++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~--l~~~~-~p~~~~~~~~ 233 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNT----NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEY--LDQLE-LPPKPVDKPL 233 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCC----TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHH--HTTCC-CCCCGGGSCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCc----CCceEEEeecccCccccccccccccccchhHHHH--HhccC-CCCCCCCCCe
Confidence 222 22222 23333321 247899999999999986543 22211 12221 22 2345
Q ss_pred cceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEccc--ceeEeec
Q 001915 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKIIGL 713 (996)
Q Consensus 670 ~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~~--~gkV~Gl 713 (996)
...|..++..++.|++++++|.+|+|++||.+++.+. ..+|.++
T Consensus 234 ~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i 279 (435)
T 1jny_A 234 RIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSI 279 (435)
T ss_dssp BEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEE
T ss_pred EEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEE
Confidence 5667788888899999999999999999999998753 3444444
No 27
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.90 E-value=1.3e-23 Score=260.65 Aligned_cols=225 Identities=30% Similarity=0.351 Sum_probs=160.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v----------------a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
...+|+|+||+|||||||+++|++... ......|+|+++....+ +...+.++|||||||+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f----~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY----DTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE----ECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE----cCCCEEEEEEECCChH
Confidence 456899999999999999999986310 01134577776644332 3455789999999999
Q ss_pred chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChh-------HHHHHHHhcCCCC
Q 001915 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE-------RVMQELSSIGLMP 625 (996)
Q Consensus 554 ~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~e-------rv~~eL~~~gl~~ 625 (996)
.|..++.+++..+|++|||||++++.++|+.+++..+...++| +||++||+|+.+ +.+ ++...+...++.
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~- 448 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFP- 448 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhcccc-
Confidence 9999999999999999999999999999999999999888999 899999999975 222 122233333432
Q ss_pred CCCCCCCcEEEeccCCC--------CChhhHHHHHHHHHHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEecc
Q 001915 626 EDWGGDIPMVQISALKG--------EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKK 697 (996)
Q Consensus 626 e~~gg~ipvVeISAktG--------eGIdEL~eaIl~lael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~ 697 (996)
+.+++++++||++| .||++|+++|..... ......+.++...|.+++.++++|++++++|.+|+|++
T Consensus 449 ---~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip--~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkv 523 (1289)
T 3avx_A 449 ---GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP--EPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523 (1289)
T ss_dssp ---TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC--CCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred ---ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC--CCccccccceeeeccccccccCCcEEEEEEEeccEEec
Confidence 13579999999999 467788877753211 00111233455666777788999999999999999999
Q ss_pred CcEEEEcccc----eeEeecc--c----cccCCCeEEE
Q 001915 698 GDVVVCGEAF----GKIIGLN--G----VPIAGDEFEV 725 (996)
Q Consensus 698 GD~VviG~~~----gkV~Gl~--g----~P~aGd~~~v 725 (996)
||.|.+.+.- .+|.++. + ...+||.+.+
T Consensus 524 GD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl 561 (1289)
T 3avx_A 524 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGV 561 (1289)
T ss_dssp TCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEE
T ss_pred CCEEEEecCCCceeEEEEEEeecCceeeEEecCCccee
Confidence 9999876542 3565553 1 2357886644
No 28
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.5e-24 Score=254.15 Aligned_cols=208 Identities=24% Similarity=0.340 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccc-------------------------------ccCCceeeeceEEEEEee
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-------------------------------EAGGITQGIGAYKVQVPV 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~s-------------------------------e~gGiTqdI~a~~V~i~i 537 (996)
....+|+|+||+|||||||+++|++...... ...|+|+++....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 4578999999999999999999986533221 1368898877666543
Q ss_pred CCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdg-------v~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a 609 (996)
.++.++|||||||+.|..++..++..+|++|||||++++ ..+|+.+++..+...++| +|||+||+|+..+
T Consensus 243 --~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 --HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred --CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 456899999999999999999999999999999999986 578999999999988877 9999999999765
Q ss_pred ChhH---HHHH----HHhcCCCCCCCCCCCcEEEeccCCCCChhhHHH------H-----HHHHHHHHhh----h-----
Q 001915 610 NPER---VMQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE------T-----IMLVAELQEL----K----- 662 (996)
Q Consensus 610 ~~er---v~~e----L~~~gl~~e~~gg~ipvVeISAktGeGIdEL~e------a-----Il~lael~el----k----- 662 (996)
+..+ +..+ +...++.. ..+++|+|||++|.||+++.. | |..+ +..+ .
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~----~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~--L~~l~~~~p~~~p~ 394 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFE----DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMST--LENAAFKISKENEG 394 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCG----GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHH--HTTSCCCCCCSSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccc----cCccEEeeecccCCCccccCccccccccccCCcHHHH--HHHHhhcccccCcc
Confidence 4322 2222 22333321 146899999999999997632 1 2211 1112 1
Q ss_pred cCCCCCCcceEEEEeeec---CCCcEEEEEEEcCEeccCcEEEEccc
Q 001915 663 ANPHRNAKGTVIEAGLHK---SKGPVATFILQNGTLKKGDVVVCGEA 706 (996)
Q Consensus 663 ~~p~r~~~g~Vies~~dk---grG~Vat~lV~~GtLk~GD~VviG~~ 706 (996)
...+.++...|.++.... +.|++++|+|.+|+|++||.|++++.
T Consensus 395 ~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~ 441 (611)
T 3izq_1 395 INKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS 441 (611)
T ss_dssp CSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTT
T ss_pred cccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecC
Confidence 112345555666666655 68999999999999999999999875
No 29
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.90 E-value=4.8e-23 Score=246.48 Aligned_cols=296 Identities=21% Similarity=0.209 Sum_probs=204.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccc------------------cCCceeeeceEEEEEeeCCccccEEEEeCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE------------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se------------------~gGiTqdI~a~~V~i~idgk~~~ItfIDTP 550 (996)
.+..+|+|+||+|||||||+++|......... ..++|.... ...+ ....+.++|||||
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~--~~~~--~~~~~~~nliDTp 82 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG--VAPL--LFRGHRVFLLDAP 82 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCE--EEEE--EETTEEEEEEECC
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEec--ceEE--eeCCEEEEEEeCC
Confidence 35578999999999999999999843221111 123443322 2222 2345789999999
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh-cC-------
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IG------- 622 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~-~g------- 622 (996)
||+.|..++.++++.+|++++|+|+.+++..|+.+++..+...++|+|+++||+|+. ...+++.+++.. ++
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~ 161 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDL 161 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEe
Confidence 999999999999999999999999999999999999999999999999999999998 766666666554 12
Q ss_pred -------------C-CCCCC------------------------------------------------------------
Q 001915 623 -------------L-MPEDW------------------------------------------------------------ 628 (996)
Q Consensus 623 -------------l-~~e~~------------------------------------------------------------ 628 (996)
+ ....|
T Consensus 162 Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~ 241 (665)
T 2dy1_A 162 PLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEA 241 (665)
T ss_dssp EEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred eecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 0 00000
Q ss_pred ---CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhc-CCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEc
Q 001915 629 ---GGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-NPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG 704 (996)
Q Consensus 629 ---gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~-~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG 704 (996)
+..+|++++||++|.||++||++|..... .... .++.++.+.|+++..++++|.++.++|.+|+|+.||.|+..
T Consensus 242 ~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp--~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~ 319 (665)
T 2dy1_A 242 VRRGLLYPVALASGEREIGVLPLLELILEALP--SPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSE 319 (665)
T ss_dssp HHTTSCEEEEECBTTTTBSHHHHHHHHHHHSC--CHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCT
T ss_pred HHhCCeeEEEEeecccCcCHHHHHHHHHHhCC--CccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcC
Confidence 01268999999999999999999975432 1111 15677899999999999999999999999999999999876
Q ss_pred cccee---Eeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHhcCcccCC
Q 001915 705 EAFGK---IIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGL 774 (996)
Q Consensus 705 ~~~gk---V~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~~~~~~~~~ 774 (996)
....+ ++-+.+ . -.|||.+.+.. .+.+ ..|+.-.....- ....-.. ..+
T Consensus 320 ~~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~g-l~~~------------------~~Gdtl~~~~~~-~~~~l~~-~~~ 378 (665)
T 2dy1_A 320 AGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPK-AEGL------------------HRGMVLWQGEKP-ESEEVPF-ARL 378 (665)
T ss_dssp TSCEEESSEEEEETTEEEEESCEETTCEEEESS-CTTC------------------CTTCEEESSSCC-CGGGSCC-CCC
T ss_pred CCeEEEeEEEEEeCCCeeECCEECCCCEEEEeC-CccC------------------ccCCEEecCCCc-cccccCC-CCC
Confidence 42222 222211 1 24888876653 1110 111111100000 0000000 012
Q ss_pred CcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 775 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 775 ~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
..+.+.+.|.+...+..+.+.++|.+|..++..+++..
T Consensus 379 ~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~ 416 (665)
T 2dy1_A 379 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLER 416 (665)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEE
Confidence 24788999999999999999999999976665555544
No 30
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=1.7e-23 Score=244.59 Aligned_cols=328 Identities=20% Similarity=0.238 Sum_probs=215.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------------ccccCCceeeeceEEEEEeeCCccccEEEE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFL 547 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va----------------------~se~gGiTqdI~a~~V~i~idgk~~~ItfI 547 (996)
+.++|+|+||+|+|||||+++|+..... .....|+|.......+. ..++.++||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~----~~~~~i~li 87 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP----YKDYLINLL 87 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE----ETTEEEEEE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE----eCCEEEEEE
Confidence 4579999999999999999999621110 11124566554443333 245789999
Q ss_pred eCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHh-cCCC--
Q 001915 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLM-- 624 (996)
Q Consensus 548 DTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~-~gl~-- 624 (996)
|||||+.|...+.++++.+|++|+|+|+++++..++...+..+...++|+|+++||+|+...+..+...++.. ++..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEE
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999987776665555433 1110
Q ss_pred CC----------------------CC------------------------------------------------------
Q 001915 625 PE----------------------DW------------------------------------------------------ 628 (996)
Q Consensus 625 ~e----------------------~~------------------------------------------------------ 628 (996)
.. .|
T Consensus 168 ~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 247 (528)
T 3tr5_A 168 PVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLK 247 (528)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhc
Confidence 00 00
Q ss_pred CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhh-------cCCCCCCcceEEEEee--ec-CCCcEEEEEEEcCEeccC
Q 001915 629 GGDIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAGL--HK-SKGPVATFILQNGTLKKG 698 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaIl~lael~elk-------~~p~r~~~g~Vies~~--dk-grG~Vat~lV~~GtLk~G 698 (996)
+..+|++++||++|.||++||++|........-. ...+.++.+.|+++.. ++ ++|.++.++|.+|+|+.|
T Consensus 248 ~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g 327 (528)
T 3tr5_A 248 GELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKG 327 (528)
T ss_dssp TSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETT
T ss_pred CceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCC
Confidence 1123799999999999999999997653211100 0113567888988763 66 899999999999999999
Q ss_pred cEEEEcccc-----eeEeecc---cc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHH
Q 001915 699 DVVVCGEAF-----GKIIGLN---GV----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAV 766 (996)
Q Consensus 699 D~VviG~~~-----gkV~Gl~---g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~~ 766 (996)
+.++....- +++..+. .. -.|||.+.+.. ... ...|+ ++.+ ...+
T Consensus 328 ~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~-l~~------------------~~~GD---tl~~-~~~~ 384 (528)
T 3tr5_A 328 MKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHN-HGT------------------IQIGD---TFTQ-GERF 384 (528)
T ss_dssp EEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEE-SSS------------------CCTTC---EEES-SCCC
T ss_pred CEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcC-CCC------------------CccCC---EEcC-CCCc
Confidence 999886531 1122221 11 25788765432 100 01111 1100 0000
Q ss_pred hcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChh--H
Q 001915 767 SAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGS--V 844 (996)
Q Consensus 767 ~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~--~ 844 (996)
.-..... -.+.+..-|.+...+..+.+..+|.+|..++. +.+.+.. .++.+||++==...=+ .
T Consensus 385 ~~~~~~~-~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~-~~~~~~~-------------~~~~~il~~~G~lhlev~~ 449 (528)
T 3tr5_A 385 KFTGIPN-FASELFRLVRLKDPLKQKALLKGLTQLSEEGA-TQLFRPL-------------DSNELILGAVGLLQFDVVA 449 (528)
T ss_dssp CBCCCEE-ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-CEEEEET-------------TCCCEEEEESSTHHHHHHH
T ss_pred ccCCCCC-CCCCEEEEEEECChhHHHHHHHHHHHHHhcCC-eEEEEcC-------------CCCCEEEEEEcHHHHHHHH
Confidence 0000011 12566677788889999999999999976664 4544432 1355666653222222 2
Q ss_pred HhHHHhcCceEEEec
Q 001915 845 KTYADNKGVEIRLYR 859 (996)
Q Consensus 845 ~~~A~~~~V~I~~~~ 859 (996)
.++.++.||++....
T Consensus 450 ~rL~~ey~v~v~~~~ 464 (528)
T 3tr5_A 450 YRLENEYNVKCVYES 464 (528)
T ss_dssp HHHHHHHCCCEEEEC
T ss_pred HHHHHHhCcEEEEec
Confidence 346666787776543
No 31
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.89 E-value=1.2e-24 Score=259.25 Aligned_cols=210 Identities=27% Similarity=0.320 Sum_probs=165.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc------------------cccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~------------------se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
|..+|+|+||+|||||||+++|+...... ....|||+..... .+.++++.|+|+||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~----~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT----SFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCC----CCBCSSCBCCCEECCC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeE----EEEECCEEEEEEECCC
Confidence 34689999999999999999997321111 1123666554332 2345668899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcC-CCC-----
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIG-LMP----- 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~g-l~~----- 625 (996)
|.+|.....++++.+|++|+|||+.+|+++||..+++++...++|.|+++||+|...++..++..++...- ...
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999888877776665421 000
Q ss_pred -C--------C-----------------------------------------CCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 626 -E--------D-----------------------------------------WGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 626 -e--------~-----------------------------------------~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
. . .+.-.|+++.||+++.||+.|++.|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 0 0 0123688999999999999999998643
Q ss_pred HHHHhhhcCCCCCCcceEEEEeeecCCCcEEEEEEEcCEeccCcEEEEcc
Q 001915 656 AELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE 705 (996)
Q Consensus 656 ael~elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~GtLk~GD~VviG~ 705 (996)
. ......++.++.+.|+++..++++|.++.++|.+|+|+.||.|++..
T Consensus 237 ~--p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~ 284 (638)
T 3j25_A 237 F--YSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSE 284 (638)
T ss_dssp C--CCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCC
T ss_pred c--cCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCcccccc
Confidence 2 12223345678899999999999999999999999999999986543
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=8.2e-23 Score=232.39 Aligned_cols=222 Identities=19% Similarity=0.319 Sum_probs=161.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~~ 557 (996)
...++|+++|++|||||||+|+|++..+. .+..+|+|++.....+. +++ ..++||||||+ +.|..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~--~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~ 248 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFT--YNQ--QEFVIVDTAGMRKKGKVYETTEKYSV 248 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEE--ETT--EEEEETTHHHHTCBTTBCCCCSHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEE--ECC--eEEEEEECCCcCcCccccchHHHHHH
Confidence 45689999999999999999999987764 67778888876444433 333 46999999998 77887
Q ss_pred HHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCCc
Q 001915 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 558 mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~ip 633 (996)
++. .++..+|++|+|+|++++...|+.+++..+...++|+|+|+||||+..... +++..++... +. +...++
T Consensus 249 ~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-l~---~~~~~~ 324 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH-FQ---FLDYAP 324 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHH-CG---GGTTSC
T ss_pred HHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHh-cc---cCCCCC
Confidence 776 477999999999999999999999988888888999999999999965432 2333333332 11 112478
Q ss_pred EEEeccCCCCChhhHHHHHHHHHHHHh--------------h-hcCCCCC---CcceEEEEeeecCCCcEEEEEEEc-CE
Q 001915 634 MVQISALKGEKVDDLLETIMLVAELQE--------------L-KANPHRN---AKGTVIEAGLHKSKGPVATFILQN-GT 694 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~lael~e--------------l-k~~p~r~---~~g~Vies~~dkgrG~Vat~lV~~-Gt 694 (996)
++++||++|.||++||+.|........ . ...|... ....+.++.+...+.|++.+++++ ..
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~ 404 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPEL 404 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGG
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeCCccc
Confidence 999999999999999999876554211 1 1122222 223567777888889999888876 46
Q ss_pred eccCcEEEEcccceeEeecccccc
Q 001915 695 LKKGDVVVCGEAFGKIIGLNGVPI 718 (996)
Q Consensus 695 Lk~GD~VviG~~~gkV~Gl~g~P~ 718 (996)
++..+..++.+.+++.+||.|+|+
T Consensus 405 ~~~~y~r~l~~~~r~~~~~~g~p~ 428 (436)
T 2hjg_A 405 MHFSYERFLENRIRDAFGFEGTPI 428 (436)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTSCC
T ss_pred CCHHHHHHHHHHHHHHcCCCceeE
Confidence 777777788888889999999997
No 33
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.88 E-value=2.8e-22 Score=234.33 Aligned_cols=326 Identities=19% Similarity=0.223 Sum_probs=208.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc----------------------cccCCceeeeceEEEEEeeCCccccEEEE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFL 547 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~----------------------se~gGiTqdI~a~~V~i~idgk~~~ItfI 547 (996)
+..+|+|+||+|||||||+++|+...... ....|+|.+.....+ ...++.++||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~----~~~~~~i~li 87 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF----PYHDCLVNLL 87 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE----EETTEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE----EECCeEEEEE
Confidence 45799999999999999999998532111 012344443333232 2345789999
Q ss_pred eCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CC---
Q 001915 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--- 623 (996)
Q Consensus 548 DTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl--- 623 (996)
|||||+.|...+.+++..+|++|+|||+++++..|+.+++..+...++|+|+++||+|+...+..++..++... +.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCA 167 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEE
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999988889999999999999877665555444321 00
Q ss_pred -------------------------CCC-------------C--------------------------------------
Q 001915 624 -------------------------MPE-------------D-------------------------------------- 627 (996)
Q Consensus 624 -------------------------~~e-------------~-------------------------------------- 627 (996)
... .
T Consensus 168 ~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 247 (529)
T 2h5e_A 168 PITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFL 247 (529)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHH
Confidence 000 0
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhhc------CC-CCCCcceEEEEee---ecCCCcEEEEEEEcCEecc
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA------NP-HRNAKGTVIEAGL---HKSKGPVATFILQNGTLKK 697 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~lael~elk~------~p-~r~~~g~Vies~~---dkgrG~Vat~lV~~GtLk~ 697 (996)
-+..+|+++.||+++.||+.|++.|........... .| +.++.+.|+++.. +.++|.+++++|.+|+|+.
T Consensus 248 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~ 327 (529)
T 2h5e_A 248 AGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEK 327 (529)
T ss_dssp TTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEET
T ss_pred hCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcC
Confidence 011247999999999999999999976543211000 01 2467778888754 3568999999999999999
Q ss_pred CcEEEEcccc--ee---Eeecc---cc----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHH
Q 001915 698 GDVVVCGEAF--GK---IIGLN---GV----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASA 765 (996)
Q Consensus 698 GD~VviG~~~--gk---V~Gl~---g~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~~~~~~~l~~l~~~ 765 (996)
|+.|+....- .+ +.-+. .. -.|||.+.+.. .+. ...|+.-...+.
T Consensus 328 g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~-l~~------------------~~~Gdtl~~~~~---- 384 (529)
T 2h5e_A 328 GMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHN-HGT------------------IQIGDTFTQGEM---- 384 (529)
T ss_dssp TCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECC-SSC------------------CCTTCEEESSCC----
T ss_pred CCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEec-cCC------------------CccCCEeecCCc----
Confidence 9999886531 12 22221 11 25788765542 100 011111000000
Q ss_pred HhcCcccC--CCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChhhHHHHHhcCCEEEEecCCCChh
Q 001915 766 VSAGKLSG--LDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGS 843 (996)
Q Consensus 766 ~~~~~~~~--~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIl~Fnv~~~~~ 843 (996)
+ ...+ ...+.+.+-|.+...+..+.|.++|.+|..++. +.+.... .++.+||++==...=+
T Consensus 385 ~---~~~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~-------------~t~~~il~~~Gelhle 447 (529)
T 2h5e_A 385 M---KFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPI-------------SNNDLIVGAVGVLQFD 447 (529)
T ss_dssp C---CBCCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEET-------------TSCCEEEEESSTHHHH
T ss_pred c---ccCCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeC-------------CCCcEEEEEECHHHHH
Confidence 0 0111 123677888889999999999999999976663 6665543 2345555542111111
Q ss_pred --HHhHHHhcCceEEEec
Q 001915 844 --VKTYADNKGVEIRLYR 859 (996)
Q Consensus 844 --~~~~A~~~~V~I~~~~ 859 (996)
..++.++.||++....
T Consensus 448 v~~~rl~~ey~v~v~~~~ 465 (529)
T 2h5e_A 448 VVVARLKSEYNVEAVYES 465 (529)
T ss_dssp HHHHHHHHHSSCCEEEEC
T ss_pred HHHHHHHHHhCcEEEEec
Confidence 2445566677776554
No 34
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.87 E-value=1.4e-21 Score=235.03 Aligned_cols=296 Identities=23% Similarity=0.267 Sum_probs=203.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC--Ccc----------cc------ccCCceeeeceEEEEEeeCCccccEEEEeCCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT--KVA----------AA------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s--~va----------~s------e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG 551 (996)
+.++|+|+||+|||||||+++|+.. .+. .. ...++|+......+. + .++.++||||||
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~--~--~~~~i~liDTPG 84 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA--W--EGHRVNIIDTPG 84 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE--E--TTEEEEEECCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE--E--CCeeEEEEECcC
Confidence 4578999999999999999999842 110 00 134566554443333 2 357899999999
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCC------
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM------ 624 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~------ 624 (996)
|..|...+.+++..+|++|+|+|+.+++..++...+..+...++|+|+++||+|+...+..++..++... +..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEE
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999899999999999999877766665555432 100
Q ss_pred ----------------------C-C-CC----------------------------------------------------
Q 001915 625 ----------------------P-E-DW---------------------------------------------------- 628 (996)
Q Consensus 625 ----------------------~-e-~~---------------------------------------------------- 628 (996)
. . .+
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l 244 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAI 244 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHH
Confidence 0 0 00
Q ss_pred ------CCCCcEEEeccCCCCChhhHHHHHHHHHHHHhhh------------------cCCCCCCcceEEEEeeecCCCc
Q 001915 629 ------GGDIPMVQISALKGEKVDDLLETIMLVAELQELK------------------ANPHRNAKGTVIEAGLHKSKGP 684 (996)
Q Consensus 629 ------gg~ipvVeISAktGeGIdEL~eaIl~lael~elk------------------~~p~r~~~g~Vies~~dkgrG~ 684 (996)
+..+|+++.||++|.|++.|++.|.....-..-. ..++.++.+.|+++..++.+|.
T Consensus 245 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~ 324 (693)
T 2xex_A 245 RQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGK 324 (693)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCce
Confidence 0125799999999999999999998654322110 1256678889999999999999
Q ss_pred EEEEEEEcCEeccCcEEEEcccc-----eeEeeccc---c----ccCCCeEEEeccHHHHHHHHHHHHHHHHHHHHHhhc
Q 001915 685 VATFILQNGTLKKGDVVVCGEAF-----GKIIGLNG---V----PIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKA 752 (996)
Q Consensus 685 Vat~lV~~GtLk~GD~VviG~~~-----gkV~Gl~g---~----P~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i~~~~ 752 (996)
++.++|.+|+|+.|+.|+....- ++++-+.+ . -.|||.+.+.. .+.+ ..
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g-l~~~------------------~~ 385 (693)
T 2xex_A 325 LTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVG-LKDT------------------GT 385 (693)
T ss_dssp EEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEES-CSSC------------------CT
T ss_pred EEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeC-cccC------------------cc
Confidence 99999999999999999875421 12222221 1 24788776653 1110 11
Q ss_pred CCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEEEE
Q 001915 753 GDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 812 (996)
Q Consensus 753 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 812 (996)
|+.-.+... ...-.. -.+..+.+.+-|.+...+..+.|.++|.+|..++..+++..
T Consensus 386 GdTl~~~~~---~~~~~~-~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~ 441 (693)
T 2xex_A 386 GDTLCGEKN---DIILES-MEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHT 441 (693)
T ss_dssp TCEEEETTC---CEECCC-CSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC
T ss_pred CCEEecCCC---ccccCC-cCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEE
Confidence 111000000 000000 01224678899999999999999999999977666555543
No 35
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.87 E-value=5.6e-22 Score=238.76 Aligned_cols=298 Identities=23% Similarity=0.306 Sum_probs=197.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC--------cc----------ccccCCceeeeceEEEEEee---CCccccEEEEe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--------VA----------AAEAGGITQGIGAYKVQVPV---DGKLQPCVFLD 548 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~--------va----------~se~gGiTqdI~a~~V~i~i---dgk~~~ItfID 548 (996)
+-.+|+|+||+|||||||.++|+... +. .....|||+.-....+.+.. +.+.+.|+|||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34689999999999999999996221 10 12345677654444443321 12367899999
Q ss_pred CCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhc-CCCC--
Q 001915 549 TPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP-- 625 (996)
Q Consensus 549 TPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~-gl~~-- 625 (996)
||||.+|.....+.++.+|++|+|||+.+|++.||...++++...++|.|+++||+|...++......++... +...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~ 171 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVP 171 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEE
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceee
Confidence 9999999999999999999999999999999999999999999999999999999999988887776665431 0000
Q ss_pred ---------------------------CC---------------------------------------------------
Q 001915 626 ---------------------------ED--------------------------------------------------- 627 (996)
Q Consensus 626 ---------------------------e~--------------------------------------------------- 627 (996)
..
T Consensus 172 ~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~ 251 (709)
T 4fn5_A 172 VQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEI 251 (709)
T ss_dssp SEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHH
T ss_pred eecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHH
Confidence 00
Q ss_pred ---------CCCCCcEEEeccCCCCChhhHHHHHHHHHHHHh------------------hhcCCCCCCcceEEEEeeec
Q 001915 628 ---------WGGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHK 680 (996)
Q Consensus 628 ---------~gg~ipvVeISAktGeGIdEL~eaIl~lael~e------------------lk~~p~r~~~g~Vies~~dk 680 (996)
.+.-.|++..||+++.|+..|++.|.....-.. ...+++.++.+.|+++..+.
T Consensus 252 ~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~ 331 (709)
T 4fn5_A 252 KEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDP 331 (709)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBT
T ss_pred HHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeeccc
Confidence 012257889999999999999999875432110 02345567788899998999
Q ss_pred CCCcEEEEEEEcCEeccCcEEEEccc-----ceeEeeccc---cc----cCCCeEEEeccHHHHHHHHHHHHHHHHHHHH
Q 001915 681 SKGPVATFILQNGTLKKGDVVVCGEA-----FGKIIGLNG---VP----IAGDEFEVVDSLDVAREKAEARAFSLRNERI 748 (996)
Q Consensus 681 grG~Vat~lV~~GtLk~GD~VviG~~-----~gkV~Gl~g---~P----~aGd~~~vv~~e~~Ar~~a~~r~~~~r~~~i 748 (996)
.+|.++.++|.+|+|+.||.|+.... .++++.+.+ .+ .||+.+.+.. .+.+
T Consensus 332 ~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~G-l~~~---------------- 394 (709)
T 4fn5_A 332 FVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIG-MKDV---------------- 394 (709)
T ss_dssp TTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECS-CSSC----------------
T ss_pred CCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecC-CCcC----------------
Confidence 99999999999999999999875332 222333322 11 4677665432 1000
Q ss_pred HhhcCCCccchhhHHHHHhcCcccCCCcceeEEEEEecccchHHHHHHHHHhCCCCCeeEEE
Q 001915 749 SAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKF 810 (996)
Q Consensus 749 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~i 810 (996)
..++.-.+.+. ... -....+..+.+.+-|.+...+..+.+.++|.+|..++..+++
T Consensus 395 --~~gdTl~~~~~---~~~-~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v 450 (709)
T 4fn5_A 395 --TTGDTLCSIEK---PII-LERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRV 450 (709)
T ss_dssp --CTTCEEECSSS---CCB-CC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred --ccCCEecCCCc---ccc-CCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEE
Confidence 01110000000 000 000011235677788888888888888888888665555544
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=4.9e-22 Score=227.19 Aligned_cols=224 Identities=19% Similarity=0.305 Sum_probs=166.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccchH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFG 556 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F~ 556 (996)
....++|+++|++|+|||||+++|.+.. ......+++|.+.....+.. ++ ..++|||||| ++.|.
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~--~~--~~~~l~DT~G~~~~~~~~~~~e~~~ 267 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY--NQ--QEFVIVDTAGMRKKGKVYETTEKYS 267 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE--TT--EEEEETTGGGTTTBTTBCCCCSHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE--CC--ceEEEEECCCCCcCcccchHHHHHH
Confidence 3467899999999999999999999765 45677788888765544443 33 4799999999 78898
Q ss_pred HHHHH-hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh---hHHHHHHHhcCCCCCCCCCCC
Q 001915 557 AMRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 557 ~mr~r-ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~---erv~~eL~~~gl~~e~~gg~i 632 (996)
.++.. ++..+|++|+|+|+++++..++.+++..+...++|+|+|+||||+..... +++.+.+...-. +...+
T Consensus 268 ~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~ 343 (456)
T 4dcu_A 268 VLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYA 343 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG----GGTTS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc----cCCCC
Confidence 88775 67999999999999999999999999999989999999999999965432 333444433211 11247
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHHh---------------hhcCCCCCCc---ceEEEEeeecCCCcEEEEEEEc-C
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAK---GTVIEAGLHKSKGPVATFILQN-G 693 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~e---------------lk~~p~r~~~---g~Vies~~dkgrG~Vat~lV~~-G 693 (996)
++++|||++|.||++||++|........ ....|..... ..+.++.+...+.|++.+++++ .
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~ 423 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPE 423 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGG
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEecCcc
Confidence 8999999999999999999876543111 1112222222 3456777778889999888876 5
Q ss_pred EeccCcEEEEcccceeEeeccccccC
Q 001915 694 TLKKGDVVVCGEAFGKIIGLNGVPIA 719 (996)
Q Consensus 694 tLk~GD~VviG~~~gkV~Gl~g~P~a 719 (996)
.|+..+..|+.+.+++.+||.|+|+.
T Consensus 424 ~~~~~y~r~l~~~~r~~~~~~g~p~~ 449 (456)
T 4dcu_A 424 LMHFSYERFLENRIRDAFGFEGTPIK 449 (456)
T ss_dssp GSCHHHHHHHHHHHHHHHCCTTCCCE
T ss_pred cCCHHHHHHHHHHHHHhCCCCceeEE
Confidence 67777888888888999999999973
No 37
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=5.1e-21 Score=199.13 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|.+++|||||+++|....+.....+ |.+..++.....+++..+.+.||||+|++.|..++..+++.+|+
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~--Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCC--ccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 3557999999999999999999998887655443 55556666666677888899999999999999999999999999
Q ss_pred EEEEEecCCCCChh----HHHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Q----t~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++..... +...+......++|+|||+||+|+.+. ..++.......++ ++|++|||++
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~---------~~~~e~SAkt 159 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN---------VMFIETSAKA 159 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEEEBTTT
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---------CeeEEEeCCC
Confidence 99999999843322 222223333457899999999999542 3344443333333 5799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||+++|+.|...
T Consensus 160 g~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 160 GYNVKQLFRRVAAA 173 (216)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998754
No 38
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.85 E-value=4.8e-21 Score=188.64 Aligned_cols=159 Identities=23% Similarity=0.215 Sum_probs=114.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcccccc--------CCceeeeceEEEEE-eeCCccccEEEEeCCCccchHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GGITQGIGAYKVQV-PVDGKLQPCVFLDTPGHEAFGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~--------gGiTqdI~a~~V~i-~idgk~~~ItfIDTPGhE~F~~mr~ 560 (996)
+.++|+|+|++|+|||||+++|.+........ ...|.+..++...+ .+++..+.+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 45789999999999999998776543322111 12344443333323 3456677899999999999999999
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHH---------cCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA---------AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~---------~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg 630 (996)
.+++.+|++|+|||++++...+..+.+..+.. .++|+|+|+||+|+... ..+++...+...+
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-------- 164 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-------- 164 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC--------
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC--------
Confidence 99999999999999997655555444433322 47899999999999654 3333443333322
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
..+++++||++|.||+++|++|....
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 12899999999999999999998654
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=2.1e-20 Score=183.47 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=116.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE--FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE--EEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 355799999999999999999999887765555544443 333444456666789999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHH-HH---HHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTNE-AI---AHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E-~I---~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++....+... ++ ......++|+++|+||+|+... ..++........ .++++++||++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 156 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN---------ELMFLETSALT 156 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEecCCC
Confidence 99999999854332222 22 2222357899999999999532 223333333322 25899999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 157 ~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 157 GENVEEAFVQCARKI 171 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=2e-20 Score=179.43 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=111.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|++|+|||||+++|.+..+.....+.+ ... +...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 78 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS--EEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--cce-EEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 35689999999999999999999876654333322 221 233344566778899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHH----HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~a----k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+++...... ..++..+ ...++|+++|+||+|+... ..+......... +.++++++||++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 79 ALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--------CNCAFLESSAKS 150 (167)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--------TSCEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc--------cCCcEEEecCCC
Confidence 99999987432222 1122222 2247999999999999542 223333222222 136899999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 151 ~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 151 KINVNEIFYDLVRQ 164 (167)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998754
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=185.49 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
...++|+|+|++|+|||||+++|.+..+.....++++.+... ..+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE--EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 345789999999999999999999887766655655554433 334456666789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++....+. ..++..+.. .++|+|+|+||+|+.... ........... .++++++||++
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 162 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKN 162 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEEECTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCcEEEEeCCC
Confidence 999999998433222 222233322 378999999999996432 12222222222 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 163 g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEI 177 (196)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 42
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=1.8e-20 Score=178.90 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=111.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+|+|++|+|||||+++|.+..+.....+.++ + .+...+.+++....+.||||||++.|..++..++..+|++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~ 78 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-D--FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 78 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-E--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-e--eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 457899999999999999999998776543333222 2 2233444566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-----HHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-----~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+++...... .+........++|+++|+||+|+... ..+.........+ ++++++||++
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 149 (167)
T 1kao_A 79 ILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG---------CPFMETSAKS 149 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---------SCEEEECTTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC---------CCEEEecCCC
Confidence 99999997432221 12222222347999999999998532 1222232222222 5799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.|+++++++|...
T Consensus 150 ~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 150 KTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999754
No 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=2.1e-20 Score=178.60 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|++|+|||||+++|.+..+.....+.+... +...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE---EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceE---EEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 35789999999999999999999877654333322211 223344566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+++...... ..++..+. ..++|+++|+||+|+.+. ..++........+ ++++++||++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 150 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN---------VNYVETSAKT 150 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---------CEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC---------CeEEEeCCCC
Confidence 99999997432222 12222222 237899999999999542 2334444333332 5799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||+++|++|...
T Consensus 151 ~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 151 RANVDKVFFDLMRE 164 (168)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 44
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.8e-20 Score=180.78 Aligned_cols=157 Identities=21% Similarity=0.166 Sum_probs=113.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+++|++|+|||||+++|....+.. ...|.+.....+ .++ ...+.||||||++.|..++..++..+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~--~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d 76 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETV--TYK--NLKFQVWDLGGLTSIRPYWRCYYSNTD 76 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEE--EET--TEEEEEEEECCCGGGGGGGGGGCTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccceEEE--EEC--CEEEEEEECCCChhhhHHHHHHhccCC
Confidence 4567899999999999999999998776542 122434333333 333 568999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|+++...... .+.+..+.. .++|+++|+||+|+.... ..++...+....... ..++++++||++
T Consensus 77 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~ 152 (171)
T 1upt_A 77 AVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD----RKWQIFKTSATK 152 (171)
T ss_dssp EEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTT----SCEEEEECCTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccC----CceEEEECcCCC
Confidence 9999999998644332 222332222 478999999999996543 344444433221111 235899999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 153 ~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 153 GTGLDEAMEWLVET 166 (171)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999754
No 45
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=2.7e-20 Score=182.71 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=114.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|....+.....+.++... .....+++..+.+.||||||++.|..++..++..+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY---LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee---EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3557899999999999999999998766544444333222 3334456777778899999999999999999999999
Q ss_pred EEEEEecCCCCCh-----hHHHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRP-----QTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~-----Qt~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++.... +..+........++|+|+|+||+|+... ..+........++ ++++++||+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~ 163 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN---------IPYIETSAK 163 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT---------CCEEEEBCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC---------CeEEEeccC
Confidence 9999999985322 2222223333467899999999999542 2333333333332 579999999
Q ss_pred -CCCChhhHHHHHHHHH
Q 001915 641 -KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 -tGeGIdEL~eaIl~la 656 (996)
+|.||+++|++|....
T Consensus 164 ~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSCBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 9999999999997643
No 46
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=2.2e-20 Score=181.07 Aligned_cols=155 Identities=22% Similarity=0.190 Sum_probs=114.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+ |.+..++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTT--SCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 457999999999999999999998776543333 333333344445566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HHHHHH---HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTNE-AIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I~~ak---~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++........ ++..+. ..++|+++|+||+|+... ..++........ .++++++||++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 162 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN---------GLLFLEASAKTG 162 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 9999999854333222 222232 257899999999999532 223333333332 257999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|...
T Consensus 163 ~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 163 ENVEDAFLEAAKK 175 (179)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 47
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=2.2e-20 Score=182.21 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=115.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|.+..+.....+.++ ..++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG--AAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--CSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--eEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3457899999999999999999998776544433333 33334444556667789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++...... ..++..+.. .++|+++|+||+|+.... .+......... .++++++||++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 158 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN---------GLFFMETSAKT 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc---------CCEEEEEECCC
Confidence 999999987544222 333344443 278899999999995432 23333333332 25799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 159 g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 159 ATNVKEIFYEIARR 172 (181)
T ss_dssp CTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998743
No 48
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=2.4e-20 Score=181.16 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=112.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+.....+.+... + ...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS--Y-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEE--E-EEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCce--E-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 3456799999999999999999999876654433322222 2 233445666678999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-----HHHHHHHHHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-----~E~I~~ak~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|+|+++...... .+.+......++|+++|+||+|+... ..+......... .++++++||
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 153 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH---------HVAYFEASA 153 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECBT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecC
Confidence 9999999998432221 12222223357899999999999542 122222222222 357999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||++++++|....
T Consensus 154 ~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.2e-20 Score=180.92 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=107.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc-cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~-se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
.+.++|+|+|++|+|||||+++|.+..+.. ...+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG--IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCS--CEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCcee--eEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 456799999999999999999999877643 2333333 3333344445676778999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
++|+|+|+++...... ..++..+.. .++|+++|+||+|+.... .+.........+ ++++++||+
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 156 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG---------LPFMETSAK 156 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---------CCEEECCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---------CeEEEEeCC
Confidence 9999999988543322 222333332 578999999999996432 223332222222 579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||++++++|....
T Consensus 157 ~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKEL 172 (180)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997653
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=182.49 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....++++.+.. ...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK--IRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEE--EEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEE--EEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34579999999999999999999988776555555555443 3334456666889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHH-HHHHHHH--cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQTNE-AIAHAKA--AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E-~I~~ak~--~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++........ ++..+.. .++|+|+|+||+|+.... .+.........+ ++++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG---------IQLFETSAKEN 155 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---------CeEEEEECCCC
Confidence 99999999854333322 2233332 358999999999985422 233333333332 57999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.||+++|++|.....
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVEEMFNCITELVL 170 (181)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986543
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=3.8e-20 Score=180.60 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=113.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.+. . .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-D--SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCC-E--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccc-e--EEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 457999999999999999999998776443333222 1 1223344566667899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
|+|||+++....+.. .++..+. ..++|+++|+||+|+... ..++....+... .++++++||++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 164 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW---------NVNYVETSAKT 164 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCeEEEeCCCC
Confidence 999999874322221 1222222 237899999999998542 233344333332 25799999999
Q ss_pred CCChhhHHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVAE 657 (996)
Q Consensus 642 GeGIdEL~eaIl~lae 657 (996)
|.||+++|++|.....
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 165 RANVDKVFFDLMREIR 180 (187)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999986543
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=4.8e-20 Score=181.20 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=113.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCcc----------------------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKL---------------------------- 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~---------------------------- 541 (996)
+.++|+|+|++|+|||||+++|++..+.....+.++ ..++...+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--ASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--CEEEEEEEETTC------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--ceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 467899999999999999999998876544433333 22333333334333
Q ss_pred ---------ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHH-HHHHHHH-HcCCCEEEEecccCCCC--
Q 001915 542 ---------QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTN-EAIAHAK-AAGVPIVIAINKIDKDG-- 608 (996)
Q Consensus 542 ---------~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~-E~I~~ak-~~~IPIIVVINKiDL~~-- 608 (996)
..+.||||||++.|..++..++..+|++|+|+|++++...+.. .++..+. ..+.|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 7899999999999999999999999999999999986443332 2333333 25689999999999532
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 609 ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 609 a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
...+++...+... .++++++||++|.||++++++|....
T Consensus 164 ~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 164 VDILEVQKYAQDN---------NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp SCHHHHHHHHHHT---------TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc---------CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 2234444444443 25899999999999999999997543
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=1.5e-20 Score=182.94 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=111.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCC-ccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idg-k~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
.+..+|+|+|++|+|||||+++|.+..+.....+.++ ..++...+.+++ ....+.||||||++.|..++..++..+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 3567899999999999999999998776533333332 333444444444 4578999999999999999999999999
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHH-----cCCC-EEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 568 IAVIVVAADDGIRPQTN-EAIAHAKA-----AGVP-IVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I~~ak~-----~~IP-IIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
++|+|+|+++....+.. .++..+.. .+.| +++|+||+|+... ..+.........+ ++++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~ 152 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG---------FSSHFV 152 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC---------CcEEEE
Confidence 99999999885433222 22222322 2667 8999999999542 2233333333322 579999
Q ss_pred ccCCCCChhhHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLV 655 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~l 655 (996)
||++|.||+++|++|...
T Consensus 153 Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=5.2e-20 Score=180.43 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=113.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceE-EEEEeeCCc---------cccEEEEeCCCccchHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAY-KVQVPVDGK---------LQPCVFLDTPGHEAFGAMR 559 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~-~V~i~idgk---------~~~ItfIDTPGhE~F~~mr 559 (996)
+.++|+|+|++|+|||||+++|.+..+.....+ |.+..++ ...+.+++. .+.+.||||||++.|..++
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 457999999999999999999998776543333 3333333 223333443 5789999999999999999
Q ss_pred HHhhhcCCeEEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCC
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ 631 (996)
..++..+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+... ..+.........+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------- 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------- 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---------
Confidence 999999999999999988544333 233333332 57899999999999542 2233333333332
Q ss_pred CcEEEeccCCCCChhhHHHHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~la 656 (996)
++++++||++|.||+++|++|....
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998654
No 55
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.83 E-value=2.7e-20 Score=178.56 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=112.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|++|+|||||+++|.+..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 457899999999999999999998766543333 222333334444566678899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++...... ..++..+.. .++|+++|+||+|+... ..++........ .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g 153 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN---------SLLFMETSAKTS 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 99999987543222 223333332 36889999999998532 223333332222 257999999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.||++++++|..
T Consensus 154 ~gi~~l~~~i~~ 165 (170)
T 1r2q_A 154 MNVNEIFMAIAK 165 (170)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999864
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=178.06 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=103.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--hHHHHHHhhhcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--FGAMRARGARVTD 567 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--F~~mr~rga~~AD 567 (996)
+.++|+|+|++|+|||||+++|.+..+..... |.+.+.+...+.+++..+.+.||||||++. +..++..++..+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE---QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC---CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC---ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence 45789999999999999999999876643211 222233344455667777899999999988 5667777889999
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHH----cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I~~ak~----~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|+|+++....... +++..+.. .++|+|+|+||+|+.... .+......... .++++++||
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 150 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF---------DCKFIETSA 150 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH---------TSEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc---------CCeEEEEec
Confidence 99999999874332222 23333333 378999999999996432 22222222222 257999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||+++|++|....
T Consensus 151 ~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997654
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.2e-20 Score=181.45 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
.++|+|+|++|+|||||+++|.+..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID--FKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CC--EEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999877655444444433 33344445666778999999999999998899999999999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 571 IVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 571 LVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+|+++...... ..++..+.. .++|+++|+||+|+.... .+.........+ ++++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~g 151 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---------IPFIESSAKNDDN 151 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT---------CCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC---------CeEEEEECCCCCC
Confidence 9999987543222 223333332 378999999999994322 223332223332 5799999999999
Q ss_pred hhhHHHHHHHHH
Q 001915 645 VDDLLETIMLVA 656 (996)
Q Consensus 645 IdEL~eaIl~la 656 (996)
|++++++|....
T Consensus 152 v~~l~~~l~~~~ 163 (170)
T 1g16_A 152 VNEIFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997654
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=6.8e-20 Score=178.11 Aligned_cols=156 Identities=22% Similarity=0.257 Sum_probs=112.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++ ..+....+.+++....+.||||||++.|..++..++..+|++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--EEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 457899999999999999999998776544444333 333344445566667899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH----HHHHHHHH----cCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 570 VIVVAADDGIRPQTN----EAIAHAKA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~----E~I~~ak~----~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
|+|+|+++....+.. +.+..... .++|+++|+||+|+... ..+......... ..++++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa 155 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN--------GDYPYFETSA 155 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT--------TCCCEEECCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc--------CCceEEEEeC
Confidence 999999985433222 22222221 57899999999999632 223333322211 2368999999
Q ss_pred CCCCChhhHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLV 655 (996)
Q Consensus 640 ktGeGIdEL~eaIl~l 655 (996)
++|.||+++|++|...
T Consensus 156 ~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 156 KDATNVAAAFEEAVRR 171 (177)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999754
No 59
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=3.2e-20 Score=177.33 Aligned_cols=149 Identities=20% Similarity=0.297 Sum_probs=106.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga 563 (996)
++|+++|++|+|||||+++|.+..+. .....++|.+.....+ .+++ ..+.||||||++. +...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVV--ETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEE--EETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEE--EeCC--ceEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 58999999999999999999987654 3445566665433333 3333 4799999999887 455666788
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
..+|++|+|+|++++...........+...++|+++|+||+|+... .....++.. ++ ..+++++||++|.
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~-------~~-~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH--ELYLGPLYG-------LG-FGDPIPTSSEHAR 147 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG--GGGCGGGGG-------GS-SCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc--hHhHHHHHh-------CC-CCCeEEEecccCC
Confidence 9999999999999987777766667777789999999999999543 111111111 11 1379999999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
|++++|++|..
T Consensus 148 gv~~l~~~l~~ 158 (161)
T 2dyk_A 148 GLEELLEAIWE 158 (161)
T ss_dssp SHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 99999999864
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.83 E-value=3e-20 Score=179.06 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=107.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999877654444433333 3334455567777899999999999999998899999999
Q ss_pred EEEEecCCCCChhHH-HHHHHH---HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHA---KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~a---k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++....+.. .++..+ ...++|+++|+||+|+... ..+......... .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV---------GAKHYHTSAKQN 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEEBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCeEEEecCCCC
Confidence 999999885432222 222222 2357899999999999542 223333333332 257999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|...
T Consensus 154 ~gi~~l~~~l~~~ 166 (170)
T 1z08_A 154 KGIEELFLDLCKR 166 (170)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=3.8e-20 Score=179.88 Aligned_cols=159 Identities=27% Similarity=0.292 Sum_probs=102.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++. .++...+.++ +....+.||||||++.|..++..++..+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA--DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC--SCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce--EEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 35679999999999999999999987765444443333 3344444444 44578999999999999999999999999
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHH-------cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 568 IAVIVVAADDGIRPQTN-EAIAHAKA-------AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I~~ak~-------~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
++|+|+|+++....... .++..+.. .++|+++|+||+|+.... ......++.... ...++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~-------~~~~~~~ 156 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL-------GDIPLFL 156 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT-------TSCCEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc-------CCCeEEE
Confidence 99999999885432222 22222221 578999999999995321 122222333211 2368999
Q ss_pred eccCCCCChhhHHHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~la 656 (996)
+||++|.||+++|++|....
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 62
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=2.1e-20 Score=185.47 Aligned_cols=160 Identities=20% Similarity=0.272 Sum_probs=112.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~-se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
....++|+|+|++|+|||||+++|.+..+.. ...+ |.+.....+ ++..+.+.||||||++.|..++..++..+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 3456799999999999999999999887765 3222 333322222 34567899999999999999999999999
Q ss_pred CeEEEEEecCCCCChhH-HHHHHHHHHc-----------CCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCc
Q 001915 567 DIAVIVVAADDGIRPQT-NEAIAHAKAA-----------GVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt-~E~I~~ak~~-----------~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ip 633 (996)
|++|||||+++...... .+.+..+... ++|+|+|+||+|+.... .+++...+....+. .. ..++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~--~~~~ 164 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM-GD--HPFV 164 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH-TT--SCEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc-cC--CeeE
Confidence 99999999998654332 2333333322 89999999999996542 33444433221110 11 2368
Q ss_pred EEEeccCCCCChhhHHHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~la 656 (996)
+++|||++|.||+++|++|....
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEeeCCCccCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 63
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.83 E-value=2.3e-20 Score=182.41 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=111.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|++|+|||||+++|.+..+.....+. +.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-VFD--NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC-SCC--EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-ccc--eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 4568999999999999999999987665433322 211 2233445567778899999999999999888899999999
Q ss_pred EEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCCCCCCC
Q 001915 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~e~~gg 630 (996)
|+|||+++....+.. .++..+... ++|+++|+||+|+..... +......... +
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~ 152 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--------G 152 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------T
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc--------C
Confidence 999999885443333 233344433 899999999999854211 1111111111 1
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+++++||++|.||+++|++|...
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEecCCCccCHHHHHHHHHHH
Confidence 2489999999999999999999754
No 64
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=182.73 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=114.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-TKAD--SYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCT-TCCE--EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ccce--EEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 3567999999999999999999998776443333 2222 122334456666789999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++....... .++..+. ..++|+|+|+||+|+... ..+++.......+ ++++++||+
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 159 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------VNYVETSAK 159 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEEECTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC---------CeEEEEeCC
Confidence 9999999874322221 2222222 237899999999999542 2334444443332 579999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVAEL 658 (996)
Q Consensus 641 tGeGIdEL~eaIl~lael 658 (996)
+|.||+++|++|......
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999866543
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.83 E-value=1.3e-20 Score=185.01 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....++++.+. ....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEE--EEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee--EEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 457899999999999999999997766544444444443 333344566678899999999999999988899999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++...... ..++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG---------IKFMETSAKAN 155 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT---------CEEEECCC---
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 99999998433222 223333333 36899999999999642 2333333333332 57999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.||+++|++|.....
T Consensus 156 ~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 156 INVENAFFTLARDIK 170 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999976543
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=1.2e-19 Score=174.31 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVIL 571 (996)
.+|+++|++|+|||||+++|.+..+.. . ..|.+.....+ ......+.||||||++.|..++..++..+|++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-C--CCCSSCCEEEE----ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-c--cCcCceeEEEE----EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 479999999999999999998766542 2 22444333222 2345789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCCh
Q 001915 572 VVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (996)
Q Consensus 572 VVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGI 645 (996)
|+|+++...... .+.+..+.. .++|+++|+||+|+.... ...+...+....... ..++++++||++|.||
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH----RNWYIQATCATSGDGL 149 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS----CCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccC----ccEEEEEcccCCCcCH
Confidence 999988543322 223333322 378999999999996543 233333332211111 2357999999999999
Q ss_pred hhHHHHHHHH
Q 001915 646 DDLLETIMLV 655 (996)
Q Consensus 646 dEL~eaIl~l 655 (996)
++++++|...
T Consensus 150 ~~l~~~l~~~ 159 (164)
T 1r8s_A 150 YEGLDWLSNQ 159 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 67
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=4.1e-20 Score=177.38 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=114.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+ |....++...+.+++....+.||||||++.|..++..++..+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSC--CCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 457899999999999999999998766543333 333444445555566677899999999999998888999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH--cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~--~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
|+|+|+++...... ..++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---------LRFYRTSVKEDL 152 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---------CeEEEEecCCCC
Confidence 99999987432222 222222222 48999999999998542 2333333333332 579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
||++++++|...
T Consensus 153 ~i~~l~~~l~~~ 164 (168)
T 1z2a_A 153 NVSEVFKYLAEK 164 (168)
T ss_dssp SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=5.5e-20 Score=178.25 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=113.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeE--EEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 44789999999999999999999877765555544444 3344444566667899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHH---HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHA---KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~a---k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++...... ..++..+ ...++|+++|+||+|+... ..+......... .++++++||++|
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL---------NVMFIETSAKAG 161 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEEEBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 99999987432222 2222222 2247899999999998532 223333333332 257999999999
Q ss_pred CChhhHHHHHHH
Q 001915 643 EKVDDLLETIML 654 (996)
Q Consensus 643 eGIdEL~eaIl~ 654 (996)
.|+++++++|..
T Consensus 162 ~~i~~l~~~l~~ 173 (179)
T 2y8e_A 162 YNVKQLFRRVAA 173 (179)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999864
No 69
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=5.7e-20 Score=176.29 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=110.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+++|++|+|||||+++|.+..+.....+.++.+ .....+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 4689999999999999999999877654443333333 33333445667778999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC------hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 571 IVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN------PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 571 LVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~------~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|+++....... .++..+.. .++|+++|+||+|+.... .+......... .++++++||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 151 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK---------GLLFFETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH---------TCEEEECCTT
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 99999985433222 22223322 378999999999985321 12222222222 2579999999
Q ss_pred CCCChhhHHHHHHH
Q 001915 641 KGEKVDDLLETIML 654 (996)
Q Consensus 641 tGeGIdEL~eaIl~ 654 (996)
+|.||+++|++|..
T Consensus 152 ~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 152 TGENVNDVFLGIGE 165 (170)
T ss_dssp TCTTHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999863
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=5.3e-20 Score=180.29 Aligned_cols=156 Identities=24% Similarity=0.294 Sum_probs=110.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP-TIED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT-TCCE--EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-Cchh--eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 457899999999999999999998776443332 3322 2233344567777899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
++|+|+++....... ..+..+. ..++|+++|+||+|+.... .+.........+ ++++++||++|
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~g 150 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG---------IPFIETSAKTR 150 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT---------CCEEECCTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 999999974332221 2222222 2478999999999996432 222222222322 57999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.||+++|++|.....
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986554
No 71
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=8.7e-20 Score=182.65 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=115.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|+|+|++|+|||||+++|.+..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--ccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 457899999999999999999998776543333 223333334445566778899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++...... ..++..+.. .++|+++|+||+|+.... .+.........+ ++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 155 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---------FEFFEASAKDN 155 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT---------CEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC---------CeEEEEECCCC
Confidence 99999988543222 223333333 478999999999996432 233333333322 47999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|....
T Consensus 156 ~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 156 INVKQTFERLVDVI 169 (203)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998653
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=4.3e-20 Score=185.45 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=114.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+.....+.++.+. ....+.+++..+.+.||||||++.|..++..++..+|
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF--KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE--EEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE--EEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34568999999999999999999998777655444444443 3334445666678999999999999988889999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|||+++...... ..++..+.. .++|+|+|+||+|+.... .+.........+ ++++++||++
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 165 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---------IPFIESSAKN 165 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT---------CCEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC---------CEEEEEeCCC
Confidence 9999999987543222 222333332 378999999999994322 222322222222 4799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 166 ~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 166 DDNVNEIFFTLAKLI 180 (213)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 73
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=185.31 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=112.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|....+.... ..|....++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 45579999999999999999999987765433 3344444444555556666789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++...... ..++..+.. .++|+|+|+||+|+.. ...++........++ .+++++||++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~~~~SA~~ 176 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI--------LCAIETSAKD 176 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC--------SEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCC--------CEEEEEeCCC
Confidence 999999987433222 223333332 4689999999999954 223344443333321 2799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 177 g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 177 SSNVEEAFLRVATEL 191 (201)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 74
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.82 E-value=7.3e-20 Score=176.59 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=99.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH-HHHHhhhcCCeEE
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-MRARGARVTDIAV 570 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~-mr~rga~~ADiVI 570 (996)
++|+|+|++|+|||||+++|.+..........+|. ..+...+.+++..+.+.+|||||++.|.. ++..++..+|+++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE--DTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcC--CeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 58999999999999999999876554433333333 33444455677778899999999999876 6666789999999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 571 IVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 571 LVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+++...... .+.+..+.. .++|+++|+||+|+.+. ..+......... .++++++||++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 151 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSAALH 151 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc---------CCcEEEecCccC
Confidence 9999988432222 222222222 37899999999998532 222333222222 257999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|....
T Consensus 152 ~~v~~l~~~l~~~i 165 (169)
T 3q85_A 152 HNTRELFEGAVRQI 165 (169)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.82 E-value=2.3e-20 Score=182.88 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.+.. .+ ...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN--TF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE--EE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc--cE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 4578999999999999999999977655433332222 22 33344567777899999999999988888899999999
Q ss_pred EEEEecCCCCChhH-----HHHHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-----~E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
|+|||+++...... .+....+...++|+++|+||+|+.... .+......... .++++++||++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 152 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW---------NAAFLESSAKE 152 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEECCTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh---------CCcEEEEecCC
Confidence 99999987332222 222233334578999999999995422 23333333332 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 153 ~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 153 NQTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 76
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=4.7e-20 Score=183.70 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|++|+|||||+++|.+..+.....+.+. ..+ ...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF--ENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE--EEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeee--eee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3557999999999999999999998776544333322 222 2234456777789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH--HHHHHHHHH--cCCCEEEEecccCCCCC-----ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 569 AVIVVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA-----NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 569 VILVVDAsdgv~~Qt--~E~I~~ak~--~~IPIIVVINKiDL~~a-----~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
+|+|+|+++...... ..++..+.. .++|+|+|+||+|+... ..+.........+. ..++++||
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 169 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC--------VAYIEASS 169 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC--------SCEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC--------CEEEEeec
Confidence 999999998543333 122233333 36899999999999642 22333333333332 23999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||+++|++|....
T Consensus 170 ~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 170 VAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997643
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.2e-20 Score=187.43 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++ ..++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 3457999999999999999999998776544444333 33444445566777789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHH---HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak---~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++....+. ..++..+. ..++|+|+|+||+|+... ..+......... .+++++|||++
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 172 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ---------DMYYLETSAKE 172 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH---------TCCEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999987543222 12222222 246889999999999532 223333222222 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 173 g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 173 SDNVEKLFLDLACRL 187 (201)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 78
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=4.7e-20 Score=185.70 Aligned_cols=160 Identities=22% Similarity=0.238 Sum_probs=113.8
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhh
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~ 564 (996)
..|.....+|+|+|++|+|||||+++|.+..+.....+.++... ...+.+++..+.+.||||||++.|..++..++.
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 95 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---IADIEVDGKQVELALWDTAGQEDYDRLRPLSYP 95 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC---EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE---EEEEEECCEEEEEEEEECCCchhHHHHHHHhcC
Confidence 34555678999999999999999999998777654444443332 122345666778999999999999999999999
Q ss_pred cCCeEEEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCC
Q 001915 565 VTDIAVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMP 625 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~ 625 (996)
.+|++|+|||+++....+.. .++..+... ++|+++|+||+|+..... ++........
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---- 171 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI---- 171 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT----
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC----
Confidence 99999999999874332222 233344433 899999999999964311 1111111111
Q ss_pred CCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 626 EDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 626 e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+..+++++||++|.||++||++|...
T Consensus 172 ----~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 172 ----SAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp ----TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 12379999999999999999998754
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=7e-20 Score=181.40 Aligned_cols=158 Identities=22% Similarity=0.222 Sum_probs=111.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+. .. ..|.+.....+.+ + +..+.||||||++.|..++..++..+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 85 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVI--N--NTRFLMWDIGGQESLRSSWNTYYTNTE 85 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEE--T--TEEEEEEECCC----CGGGHHHHTTCC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEE--C--CEEEEEEECCCCHhHHHHHHHHhcCCC
Confidence 356789999999999999999999977665 22 2244444444432 3 478999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|+++...... ...+..+.. .++|+++|+||+|+... ..+++...+....+. . ..++++++||++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 86 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK--D--HQWHIQACCALT 161 (187)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCC--S--SCEEEEECBTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhc--C--CCcEEEEccCCC
Confidence 9999999998643332 233333332 57899999999999653 234444444322111 1 235899999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||++++++|....
T Consensus 162 g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRL 176 (187)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999997643
No 80
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.82 E-value=6.5e-20 Score=176.43 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=92.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccc-cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~-se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
.++|+++|++|+|||||+++|.+..... ....+.|. ...+.+++..+.+.+|||||++.|..++..++..+|++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-----DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-----EEEEEETTEEEEEEEEECC---------------CCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-----EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 4689999999999999999998665432 22223332 23344577778899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+++...... ..++..+.. .++|+++|+||+|+.... .+......... .++++++||++
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 147 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF---------DCKFIETSAAL 147 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT---------TCEEEECBGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh---------CCcEEEeccCC
Confidence 99999997433222 222233322 478999999999996432 22222222222 25899999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 148 ~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 148 HHNVQALFEGVVRQI 162 (166)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 81
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=183.93 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=115.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRT--TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCC--CSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 4567999999999999999999998776544333 33333334444456677889999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++...... ..++..+.. .++|+++|+||+|+... ..+......... .++++++||++
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~ 171 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN---------GLLFLETSALD 171 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 999999988543222 223333332 36889999999999542 223333222222 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 172 ~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 172 STNVELAFETVLKEI 186 (193)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997543
No 82
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=184.15 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++.+. +...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF--KIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE--EEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE--EEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999998776544444444333 333444566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E-~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|||+++....+... ++..+.. .++|+++|+||+|+... ..+.. ..+... + ..++++++||++|
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~~~~-~------~~~~~~~~SA~~g 174 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQG-EKFAQQ-I------TGMRFCEASAKDN 174 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHT-S------TTCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHh-c------CCCeEEEEeCCCC
Confidence 9999999854433322 2233332 47899999999999532 12222 223221 0 1368999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|...
T Consensus 175 ~gi~~l~~~l~~~ 187 (192)
T 2il1_A 175 FNVDEIFLKLVDD 187 (192)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=182.38 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+ |.+..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA--TLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCC--CccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4568999999999999999999998766433222 33333444445567777889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCC---------ChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGA---------NPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a---------~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
+|+|||+++....+.. .++..+.. .++|+|+|+||+|+... ..+......... .++++
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~ 174 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY---------GALFC 174 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH---------TCEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc---------CCeEE
Confidence 9999999885443332 22233332 47899999999998421 111222222222 25799
Q ss_pred EeccCCCCChhhHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~l 655 (996)
++||++|.||+++|++|...
T Consensus 175 ~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998754
No 84
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.2e-20 Score=181.20 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=112.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+|+|++|+|||||+++|.+..+.....+.+ .. .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV--FD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS--CC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--cc-eeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 44689999999999999999999876644333322 11 1233444566678899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCC---------------hhHHHHHHHhcCCCCCCCCC
Q 001915 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~---------------~erv~~eL~~~gl~~e~~gg 630 (996)
|+|+|+++....+.. .++..+... ++|+++|+||+|+.... .++.......++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 165 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-------- 165 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC--------
Confidence 999999885433332 233444443 89999999999996421 112222222222
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+++++||++|.||+++|++|...
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 2379999999999999999999754
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=8.8e-20 Score=182.41 Aligned_cols=159 Identities=23% Similarity=0.238 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccce--EEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 355789999999999999999999887665444444443 344445556667789999999999999888889999999
Q ss_pred EEEEEecCCCCChhHHH-HHHHHHH-------cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 569 AVIVVAADDGIRPQTNE-AIAHAKA-------AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E-~I~~ak~-------~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
+|+|+|+++........ ++..+.. .++|+++|+||+|+.... .+... .+.... ..++++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~-------~~~~~~~~S 155 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ-AWCYSK-------NNIPYFETS 155 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHH-HHHHHT-------TSCCEEECB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHH-HHHHhc-------CCceEEEEe
Confidence 99999998854332222 2222211 478999999999996322 22222 222211 236899999
Q ss_pred cCCCCChhhHHHHHHHHHH
Q 001915 639 ALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 639 AktGeGIdEL~eaIl~lae 657 (996)
|++|.||+++|++|.....
T Consensus 156 a~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 156 AKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999976543
No 86
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=6.9e-20 Score=176.15 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=112.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+|+|++|+|||||+++|.+..+.....+ |.+.........+.+....+.||||||++.|..++..++..+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP--TIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC--CCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 457899999999999999999998776433332 222223334445566678899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++....... .++..+.. .++|+++|+||+|+.... .+......... .++++++||++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI---------HAIFVETSAKNA 153 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc---------CCEEEEEeCCCC
Confidence 999999885443332 23333433 367899999999995421 22222222222 257999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.|+++++++|...
T Consensus 154 ~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 154 ININELFIEISRR 166 (170)
T ss_dssp BSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999998743
No 87
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.8e-20 Score=180.79 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=115.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++. .+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV--DFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSE--EEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccce--EEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4579999999999999999999987765444443333 33334445567778899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH----cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~----~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|+|+++....... .++..+.. .++|+++|+||+|+.... .+......... .++++++||++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH---------SMLFIEASAKTC 162 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc---------CCEEEEecCCCC
Confidence 999999885433322 22333332 368899999999995432 23333333332 257999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|....
T Consensus 163 ~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 163 DGVQCAFEELVEKI 176 (195)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997654
No 88
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=2.2e-20 Score=182.40 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|....+.....+. +.+ .+ ...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t-~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFD-NF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCe-eee-eE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 35689999999999999999999977654333222 211 11 1122234556678899999999999999999999999
Q ss_pred EEEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCCh-------------hHHHHHHHhcCCCCCCCCCC
Q 001915 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANP-------------ERVMQELSSIGLMPEDWGGD 631 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~~-------------erv~~eL~~~gl~~e~~gg~ 631 (996)
+|+|+|+++....+.. .++..+.. .++|+++|+||+|+..... ++........+ .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~ 154 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG--------A 154 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT--------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC--------C
Confidence 9999999875433332 23333333 3799999999999854321 11122122222 2
Q ss_pred CcEEEeccCCCCChhhHHHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~l 655 (996)
.++++|||++|.||+++|++|...
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999754
No 89
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=5.9e-21 Score=220.59 Aligned_cols=224 Identities=16% Similarity=0.144 Sum_probs=129.9
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhhcccCChhhhhcccCC
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~~~~l~ee~~~~l~~R 490 (996)
.+++.+|.+.|+....++.+.|+.+ +..++..||++. +.+ ++.....+......+...+ .............+.
T Consensus 159 ~~a~~~l~G~ls~~i~~lr~~L~~~--~a~iea~iDf~e-edi-~~~~~~~l~~~i~~l~~~l--~~~~~~~~~~~~~r~ 232 (476)
T 3gee_A 159 RTAVSQMKGDLSVRLGGLREQLIRS--CALIELELDFSE-EDV-EFQSRDELTMQIETLRSEV--NRLIDSYQHGRIVSE 232 (476)
T ss_dssp HHHHHHHHTHHHHHHHHHHTHHHHH--HHTTTTCSSCCS-SCC-SSSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHH--HHHhheecCCCc-ccc-cchhHHHHHHHHHHHHHHH--HHHHHHHHhhHhhcC
Confidence 4788999999999999999999886 556666677643 100 0000000000000111111 111112222334456
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHH--------HH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR--------AR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr--------~r 561 (996)
.++|+|+|++|+|||||+|+|.+... ..+..+++|++.....+.+ + ++.++||||||+..+.... ..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~--~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH--D--KTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE--T--TEEEEEEC--------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--C--CeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 78899999999999999999998754 4677788998865554443 3 4679999999987765433 23
Q ss_pred hhhcCCeEEEEEecCCCCCh----hHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 562 GARVTDIAVIVVAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~----Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
++..+|++|+|+|++++... ++.+++..+. ++|+|+|+||+|+........ .++...++ .++++|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~--------~~~i~v 377 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADGTG--------TEVIGI 377 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHHHT--------SCEEEC
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhcCC--------CceEEE
Confidence 56899999999999998877 4444444443 789999999999976543322 23333211 579999
Q ss_pred ccCCCCChhhHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLV 655 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~l 655 (996)
||++|.||++|+++|...
T Consensus 378 SAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp BTTTTBSHHHHHHHHTHH
T ss_pred EECCCCCHHHHHHHHHHH
Confidence 999999999999999754
No 90
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=3.7e-20 Score=187.96 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc--cccccCCceeeeceEEEEEeeCCccccEEEEeCCCc----------cchH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFG 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v--a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh----------E~F~ 556 (996)
.+.++|+|+|++|+|||||+++|++... ......++|.++..+.+. ......+.||||||+ +.|.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG---PAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES---CTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec---CCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3568999999999999999999998762 355666777775443332 134578999999994 5556
Q ss_pred HHHHHhhhc---CCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHH----HHHHhcCCCCCCC
Q 001915 557 AMRARGARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVM----QELSSIGLMPEDW 628 (996)
Q Consensus 557 ~mr~rga~~---ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~----~eL~~~gl~~e~~ 628 (996)
.+...++.. +|++|+|+|++++.......++..+...++|+|+|+||+|+..... .... ..+....- ...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~--~~~ 181 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD--AGY 181 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH--HTC
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh--ccc
Confidence 666666655 7889999999998888888888888888999999999999964221 1112 22222100 000
Q ss_pred CCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 629 GGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
....+++++||++|.||++|+++|...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 234789999999999999999999754
No 91
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=5.2e-20 Score=185.01 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=115.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++.+ ++...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD--FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC--EEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45799999999999999999999887765544444433 3334444567677899999999999999889999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|||||+++....... .++..+.. .++|+++|+||+|+.... .+......... .++++++||++|
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN---------KMPFLETSALDS 155 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 999999985433332 22333332 468999999999996432 22222222222 257999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.||+++|++|.....
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986543
No 92
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.82 E-value=3.3e-19 Score=169.52 Aligned_cols=153 Identities=25% Similarity=0.302 Sum_probs=110.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+++|++|+|||||+++|.+..+.....+.+. + .+...+.+++..+.+.||||||++.|..++..++..+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-D--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-E--EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-e--EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 46899999999999999999998766543333222 1 12333445666778999999999999999999999999999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 571 IVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 571 LVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
+|+|+++...... .+++..+.. .++|+++++||+|+.... .+.........+ ++++++||++|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG---------IPYIETSAKTRQ 150 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---------CCEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC---------CeEEEecCCCCC
Confidence 9999987433222 222222222 379999999999986522 222232222322 579999999999
Q ss_pred ChhhHHHHHHHH
Q 001915 644 KVDDLLETIMLV 655 (996)
Q Consensus 644 GIdEL~eaIl~l 655 (996)
|+++++++|...
T Consensus 151 gi~~l~~~l~~~ 162 (166)
T 2ce2_X 151 GVEDAFYTLVRE 162 (166)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 93
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=9.2e-20 Score=181.95 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=114.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+ |.+..+....+.+++....+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--CcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3557999999999999999999998765432222 22333334445556677889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++....+.. .++..+.. .++|+++|+||+|+... ..++........ .++++++||++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 169 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI---------GAIVVETSAKN 169 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT---------TCEEEECBTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 9999999886443332 23333333 37899999999999531 223333333222 26799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 170 ~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 170 AINIEELFQGISRQ 183 (192)
T ss_dssp TBSHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999753
No 94
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=4.7e-20 Score=186.12 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=111.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+|+|++|+|||||+++|....+.....+.+ .. .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~--~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FD-NFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS--CC-CEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc--ce-eEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 45789999999999999999999877653333322 21 2233444567778899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCC-----------ChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 570 VIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGA-----------NPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a-----------~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
|+|||+++....... .++..+... ++|+|+|+||+|+... ..++.......++ ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~ 156 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG--------AAAY 156 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT--------CSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC--------CceE
Confidence 999999885433322 233344433 7999999999998543 1222222222222 2479
Q ss_pred EEeccCCCCChhhHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~la 656 (996)
+++||++|.||+++|++|....
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 95
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=2e-19 Score=178.13 Aligned_cols=155 Identities=18% Similarity=0.292 Sum_probs=113.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc--ccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccchH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFG 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va--~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F~ 556 (996)
.+.++|+|+|++|+|||||+++|.+..+. .....++|.++..+. ++ ..+.|||||| ++.|.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~---~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----IN---DELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ET---TTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE----EC---CcEEEEECCCCCccccCHHHHHHHH
Confidence 36789999999999999999999987633 334455666543332 22 2699999999 78888
Q ss_pred HHHHHhhhcC---CeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHh-cCCCCCCCCCC
Q 001915 557 AMRARGARVT---DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSS-IGLMPEDWGGD 631 (996)
Q Consensus 557 ~mr~rga~~A---DiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~-~gl~~e~~gg~ 631 (996)
.++..++..+ |++++|+|++++......+.+..+...++|+++|+||+|+.... ......++.. ... ...
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 168 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-----DPE 168 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----CTT
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----cCC
Confidence 8888888776 99999999999888888777778877899999999999996532 2222233332 221 124
Q ss_pred CcEEEeccCCCCChhhHHHHHHHH
Q 001915 632 IPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 632 ipvVeISAktGeGIdEL~eaIl~l 655 (996)
.+++++||++|.||++|+++|...
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHH
Confidence 789999999999999999998754
No 96
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=173.08 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEE
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVI 570 (996)
..+|+++|++|+|||||+++|.+..+.....+.+ ...+ ......++..+.+.||||||++.|..++..++..+|++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV--EDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS--CEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--cccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 4689999999999999999999876543332222 2111 222334566678999999999999999999999999999
Q ss_pred EEEecCCCCChh-HHHHHHHHHH-----cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 571 IVVAADDGIRPQ-TNEAIAHAKA-----AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 571 LVVDAsdgv~~Q-t~E~I~~ak~-----~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+++..... ....+..+.. .++|+++|+||+|+.... ........... .++++++||++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 150 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW---------KCAFMETSAKL 150 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TCEEEECBTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEecCCC
Confidence 999998743222 2223332322 378999999999985321 12222222222 25799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 151 ~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 151 NHNVKELFQELLNL 164 (172)
T ss_dssp TBSHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999998743
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=2.2e-19 Score=181.43 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc-cccEEEEeCCCccchHH-HHHHhhhcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK-LQPCVFLDTPGHEAFGA-MRARGARVT 566 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk-~~~ItfIDTPGhE~F~~-mr~rga~~A 566 (996)
.+.++|+|+|++|+|||||+++|.+..+.... ..++. ..+. +.+++. .+.+.|||||||+.|.. ++..++..+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~--~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITD--SSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSC--EEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcce--eeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 45689999999999999999999987754333 22332 2333 334443 57899999999999998 788889999
Q ss_pred CeEEEEEecCCCCChhHH---HHHHH-HH-----HcCCCEEEEecccCCCCCC-hhHHHHHHHhc---------------
Q 001915 567 DIAVIVVAADDGIRPQTN---EAIAH-AK-----AAGVPIVIAINKIDKDGAN-PERVMQELSSI--------------- 621 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~---E~I~~-ak-----~~~IPIIVVINKiDL~~a~-~erv~~eL~~~--------------- 621 (996)
|++|||||+++ ...... +.+.. +. ..++|+++|+||+|+.... .+.+...+...
T Consensus 80 ~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 80 RAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 99999999987 211122 22221 11 2368999999999996543 33333332210
Q ss_pred -------CCCC---C-----CCCCCCcEEEeccCCC------CChhhHHHHHHHH
Q 001915 622 -------GLMP---E-----DWGGDIPMVQISALKG------EKVDDLLETIMLV 655 (996)
Q Consensus 622 -------gl~~---e-----~~gg~ipvVeISAktG------eGIdEL~eaIl~l 655 (996)
.+.. . .+...++|++|||++| .||+++|++|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000 0 1111678999999999 9999999998753
No 98
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.81 E-value=7.2e-20 Score=182.23 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|.+..+.......++ ..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--SSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--ceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 3457899999999999999999998776544433333 33333444456667889999999999999988999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|+|+++....+. ..++..+.. .++|+++|+||+|+.. ...+.........+ ++++++||++
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~~Sa~~ 167 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG---------LIFMETSAKT 167 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC---------CEEEEEeCCC
Confidence 999999987443332 223333333 3789999999999953 12233333333322 5799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 168 ~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 168 ACNVEEAFINTAKEI 182 (191)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997554
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.81 E-value=1.4e-19 Score=178.35 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=111.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+++|++|+|||||+++|.+.. .... ..|.+.....+. + ....+.||||||++.|..++..++..+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~--~~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI--SPTLGFNIKTLE--H--RGFKLNIWDVGGQKSLRSYWRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC--CCCSSEEEEEEE--E--TTEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc--cccCccceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 467899999999999999999999766 2222 224343333333 3 35789999999999999998899999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++...... .+.+..+.. .++|+++|+||+|+.... .+++...+...... ...++++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR----SHHWRIQGCSAVTG 164 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhcc----CCceEEEEeeCCCC
Confidence 999999998643332 223333322 478999999999996542 33333333211111 12468999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||++++++|....
T Consensus 165 ~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 165 EDLLPGIDWLLDDI 178 (186)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997653
No 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=3.2e-19 Score=175.63 Aligned_cols=156 Identities=20% Similarity=0.314 Sum_probs=116.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC----------ccchHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG----------hE~F~~ 557 (996)
...++|+|+|++|+|||||+++|.+.... .....++|.++..+. . ...+.|||||| ++.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~----~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL----V---NSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE----E---TTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE----E---CCcEEEEECCCCccccCChhhHHHHHH
Confidence 35579999999999999999999987643 334445565543222 1 24699999999 777888
Q ss_pred HHHHhhhcC---CeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCc
Q 001915 558 MRARGARVT---DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 558 mr~rga~~A---DiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ip 633 (996)
++..++..+ |++++|+|+++.........+..+...++|+|+|+||+|+.... ......++..... ..+.++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 169 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS----KYGEYT 169 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH----SSCCSC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh----hcCCCc
Confidence 777777655 99999999999888888888888888899999999999996432 2222223222110 012468
Q ss_pred EEEeccCCCCChhhHHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~l 655 (996)
++++||++|.||+++|++|...
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTL 191 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHH
Confidence 9999999999999999999754
No 101
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=1e-19 Score=180.52 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=111.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH-HHHHHhhhcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVTD 567 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~-~mr~rga~~AD 567 (996)
.+.++|+|+|++|+|||||+++|....+.....+.++. .++...+.+++..+.+.||||||++.|. .++..+++.+|
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 45689999999999999999999987766544443333 3344444556667889999999999998 78888899999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|||+++...... ..++..+. ..++|+|+|+||+|+... ..+......... .++++++||
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa 166 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH---------SMPLFETSA 166 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCCEEECCS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc---------CCEEEEEeC
Confidence 9999999987432222 12222222 357899999999999532 222222222222 257999999
Q ss_pred CCC---CChhhHHHHHHH
Q 001915 640 LKG---EKVDDLLETIML 654 (996)
Q Consensus 640 ktG---eGIdEL~eaIl~ 654 (996)
++| .||+++|++|..
T Consensus 167 ~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp SSGGGGSCHHHHHHHHC-
T ss_pred CcCCcccCHHHHHHHHHH
Confidence 999 999999999864
No 102
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=181.82 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=107.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP-TAFD--NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------C-CSSE--EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-cccc--eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 45678999999999999999999998765433322 2222 22334445666678999999999999988888999999
Q ss_pred eEEEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCC---------------hhHHHHHHHhcCCCCCCC
Q 001915 568 IAVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDW 628 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~---------------~erv~~eL~~~gl~~e~~ 628 (996)
++|+|||+++....... .++..+.. .++|+|+|+||+|+.... .+.........+
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 167 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK------ 167 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC------
Confidence 99999999885433332 23333333 379999999999995421 111222222221
Q ss_pred CCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 629 GGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
..++++|||++|.||+++|++|....
T Consensus 168 --~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 --AASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp --CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 24799999999999999999997654
No 103
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=1.5e-19 Score=179.78 Aligned_cols=158 Identities=21% Similarity=0.267 Sum_probs=113.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+..... .|.+..+..+ ....+.+.||||||++.|..++..++..+|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 3456799999999999999999999877653332 2433333332 234578999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|+++....+. .+.+..+. ..++|+|+|+||+|+... +.+++...+...... ...+++++|||++
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQ----DREICCYSISCKE 168 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECCTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhc----cCCeeEEEEECCC
Confidence 9999999987543322 22333332 257899999999999654 233333333221111 1246799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||+++|++|...
T Consensus 169 g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 169 KDNIDITLQWLIQH 182 (188)
T ss_dssp CTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998743
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=7e-20 Score=185.45 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=111.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|....+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFD--NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC-CSEE--EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC-eecc--eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 4568999999999999999999998766543333 3322 233444556777788899999999999999999999999
Q ss_pred EEEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCCCCCC
Q 001915 569 AVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDWG 629 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~e~~g 629 (996)
+|+|||+++....+.. .++..+... ++|+|+|+||+|+..... +.........
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 176 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-------- 176 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc--------
Confidence 9999999985544433 233444443 899999999999854321 1111111111
Q ss_pred CCCcEEEeccCCCCChhhHHHHHHH
Q 001915 630 GDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 630 g~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
+..++++|||++|.||+++|++|..
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 177 GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 2346999999999999999999874
No 105
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.81 E-value=5.3e-20 Score=185.84 Aligned_cols=161 Identities=22% Similarity=0.222 Sum_probs=107.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+..+|+++|++|+|||||+++|.+..+.. ...|.+.....+. +++ ..+.+|||||++.|..++..++..+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~--~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELT--IAG--MTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEE--ETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCceeEEEE--ECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence 34567899999999999999999998766532 1234444333333 333 7899999999999999888999999
Q ss_pred CeEEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCC--------CCCCCCC
Q 001915 567 DIAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP--------EDWGGDI 632 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~--------e~~gg~i 632 (996)
|++|+|+|+++...... ...+..+. ..++|+++|+||+|+... ..+++.+.+....... ......+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999988543322 22233222 247899999999999653 3444444443222100 0011346
Q ss_pred cEEEeccCCCCChhhHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~ 654 (996)
++++|||++|.||+++|++|..
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999999863
No 106
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=1.2e-19 Score=180.13 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=114.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+|+|++|+|||||+++|.+..+.....+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--CEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--EEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 457999999999999999999998776544333332 223333444566678899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
|+|||+++...... ..++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~g 169 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG---------FEFFEASAKEN 169 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC---------CeEEEEECCCC
Confidence 99999987533322 233344443 37899999999999532 2233333333332 47999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|....
T Consensus 170 ~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 170 INVKQVFERLVDVI 183 (189)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997653
No 107
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=1.3e-19 Score=179.01 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=110.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+.. ...|.+.....+. ++ +..+.||||||++.|..++..++..+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIV--IN--NTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEE---EECCSSSSCEEEE--ET--TEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCc---cCCcCceeeEEEE--EC--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3466899999999999999999999877621 1223333333333 23 478999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|+++....+. .+.+..+. ..++|+|+|+||+|+... ..+++...+....+. ...++++++||++
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK----DHQWHIQACCALT 166 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccccc----CCceEEEEccCCC
Confidence 9999999998644332 23333333 257899999999999653 233444333221111 1235899999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|.||+++|++|..
T Consensus 167 g~gi~~l~~~l~~ 179 (181)
T 2h17_A 167 GEGLCQGLEWMMS 179 (181)
T ss_dssp TBTHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 9999999999863
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=4.8e-19 Score=175.78 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+++|++|+|||||+++|.+..+... ..|.+. ....+.++ ...+.+|||||++.|..++..++..+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~---~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI---TPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE---EEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc---cCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 4668999999999999999999987654311 123332 22233333 5789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHH-H---HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHA-K---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~a-k---~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++...... .+.+..+ . ..++|+++|+||+|+.... .+++...+...... ...+++++|||++|
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR----DRVWQIQSCSALTG 162 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhcc----CCceEEEEccCCCC
Confidence 999999988543332 2222222 1 2478999999999996543 23333332211111 12357999999999
Q ss_pred CChhhHHHHHHHH
Q 001915 643 EKVDDLLETIMLV 655 (996)
Q Consensus 643 eGIdEL~eaIl~l 655 (996)
.||+++|++|...
T Consensus 163 ~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 163 EGVQDGMNWVCKN 175 (181)
T ss_dssp TTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999743
No 109
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=9.8e-20 Score=181.27 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
...++|+|+|++|+|||||+++|.+..+..... .|.+.......+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 355799999999999999999999766543322 233344445555567777889999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++...... ..++..+.. .++|+|+|+||+|+... ..+.........+ ++++++||++
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~ 169 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG---------FDFFEASAKE 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------CEEEECBTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---------CeEEEEECCC
Confidence 999999987433222 223333333 47899999999998532 2223332233332 5799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 170 ~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 170 NISVRQAFERLVDAI 184 (191)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997653
No 110
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=3.1e-20 Score=185.03 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC--CccccccCCceeeeceEEEEEeeCCc--cccEEEEeCCCccchHHHHHHhhh
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGGITQGIGAYKVQVPVDGK--LQPCVFLDTPGHEAFGAMRARGAR 564 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s--~va~se~gGiTqdI~a~~V~i~idgk--~~~ItfIDTPGhE~F~~mr~rga~ 564 (996)
.+.++|+|+|++|+|||||+++|.+. .+..... .|.++.++...+.+++. .+.+.||||||++.|..++..++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYA--MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCC--CccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 34579999999999999999999987 4432222 34333344444455555 678999999999999999999999
Q ss_pred cCCeEEEEEecCCCCChhH-HHHHHHHHH------cCCCEEEEecccCCCC-C---ChhHHHHHHHhcCCCCCCCCCCCc
Q 001915 565 VTDIAVIVVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDG-A---NPERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt-~E~I~~ak~------~~IPIIVVINKiDL~~-a---~~erv~~eL~~~gl~~e~~gg~ip 633 (996)
.+|++|+|||+++...... ..++..+.. .++|+|+|+||+|+.. . ..++.......++ ++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~---------~~ 166 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT---------LD 166 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT---------CE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC---------CE
Confidence 9999999999988543222 233333433 4789999999999965 1 1233333333332 58
Q ss_pred EEEeccCC-CCChhhHHHHHHHHH
Q 001915 634 MVQISALK-GEKVDDLLETIMLVA 656 (996)
Q Consensus 634 vVeISAkt-GeGIdEL~eaIl~la 656 (996)
++++||++ |.||+++|++|....
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EEECCC-------CHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHH
Confidence 99999999 999999999997643
No 111
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3e-19 Score=177.10 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+ |.... +.....+++..+.+.||||||++.|..++..++..+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 3567999999999999999999998766533332 22221 22233456667789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH----HHHHHHHHH--cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRPQT----NEAIAHAKA--AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~Qt----~E~I~~ak~--~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++...... ...+..... .++|+|+|+||+|+.... .+.........+ ++++++||+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~ 153 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK---------CAFMETSAK 153 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT---------CEEEECBTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC---------CeEEEEecC
Confidence 999999987432221 222222221 378999999999996432 222222222222 579999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.||++|+++|...
T Consensus 154 ~~~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 154 MNYNVKELFQELLTL 168 (199)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 112
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.81 E-value=7.2e-20 Score=201.35 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=142.8
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeec--C-hhhhHHHhhhcccCChhhhhcc
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDA--D-PVKMEEMARKKDLFDEEDLDKL 487 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~--~-~~~~e~ll~~~~~l~ee~~~~l 487 (996)
.-+-.++..+. .--...++.+|+.+.+...+..++.+.....+..|...+... . ....+.... ...........+
T Consensus 84 ~~~~~~~~~~~-~~gN~~~n~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 161 (329)
T 3o47_A 84 KWKDIELEKMK-AGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPA-QNWTPPQPRGLF 161 (329)
T ss_dssp CCCHHHHHHHH-HCCHHHHHHHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC------CCCCC-----
T ss_pred CCCHHHHHHHH-HhCcHHHHHHHHhcCCCCCCCCccccccchHHHHHhhhccccccCCccccccccc-cccCCCCccccc
Confidence 34455554443 345677788888877777777888877766666655432100 0 000000000 000000111123
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+..+.... .|+++.++.+. ...+.++||||||++.|..++..++..+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~---pT~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE---EETTEEEEEEE----ETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcc---cccceEEEEEe----cCcEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345679999999999999999999887764322 25555444433 34578999999999999999999999999
Q ss_pred eEEEEEecCCCCChhHH-HHH-HHHHH---cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQTN-EAI-AHAKA---AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I-~~ak~---~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|||||+++....... +.+ ..+.. .++|+|||+||+|+.... .+++...+...... ...++++++||++
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~vSAk~ 310 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR----HRNWYIQATCATS 310 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC----SSCEEEEECBTTT
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh----cCCCEEEEEECCC
Confidence 99999999875443322 222 22222 378999999999997543 34444444322211 1246899999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++||++|...
T Consensus 311 g~gi~el~~~l~~~ 324 (329)
T 3o47_A 311 GDGLYEGLDWLSNQ 324 (329)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999754
No 113
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.81 E-value=1.4e-19 Score=183.30 Aligned_cols=157 Identities=22% Similarity=0.201 Sum_probs=112.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc----------cccEEEEeCCCccchHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK----------LQPCVFLDTPGHEAFGAM 558 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk----------~~~ItfIDTPGhE~F~~m 558 (996)
.+.++|+|+|++|+|||||+++|.+..+..... .|.++.+....+.+++. .+.+.||||||++.|..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCC--CceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 355799999999999999999999877643333 34444343333444444 578999999999999999
Q ss_pred HHHhhhcCCeEEEEEecCCCCChhHHH-HHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCC
Q 001915 559 RARGARVTDIAVIVVAADDGIRPQTNE-AIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGG 630 (996)
Q Consensus 559 r~rga~~ADiVILVVDAsdgv~~Qt~E-~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg 630 (996)
+..++..+|++|||||+++....+... ++..+.. .++|+|+|+||+|+... ..+.........
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~--------- 171 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY--------- 171 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC---------
Confidence 999999999999999998744333222 2222211 46889999999999542 223333333222
Q ss_pred CCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 631 DIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 631 ~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.++++++||++|.||+++|++|....
T Consensus 172 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 172 GIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 25799999999999999999998654
No 114
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=179.87 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=111.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+.++|+|+|++|+|||||+++|.+....... ...|.+.. ...+.++ +..+.||||||++.|..++..++..+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 346789999999999999999999877622222 22344432 2233333 478999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH------cCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~------~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|+|+++...... ...+..+.. .++|+|+|+||+|+... ..+++...+....+.. ..+++++|||
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa 168 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD----KPWHICASDA 168 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCS----SCEEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccC----CceEEEEccC
Confidence 9999999988532222 223333322 47899999999999653 3344444443222111 2468999999
Q ss_pred CCCCChhhHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLV 655 (996)
Q Consensus 640 ktGeGIdEL~eaIl~l 655 (996)
++|.||++++++|...
T Consensus 169 ~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999999754
No 115
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.81 E-value=3.9e-19 Score=175.74 Aligned_cols=156 Identities=24% Similarity=0.279 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+.++|+++|.+|+|||||+++|....+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT-TCCE--EEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCC-ccce--EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 457999999999999999999997765543333 2222 1223344566667899999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH----cCCCEEEEecccCCCCC--ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~----~~IPIIVVINKiDL~~a--~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
++|+|+++....... .++..+.. .++|+++|+||+|+... ..+.........+ ++++++||++|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 167 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG---------IPFIETSAKTR 167 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---------CCEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC---------CeEEEEeCCCC
Confidence 999999885433222 22222222 37899999999998642 2233333333332 47999999999
Q ss_pred CChhhHHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVAE 657 (996)
Q Consensus 643 eGIdEL~eaIl~lae 657 (996)
.|+++++++|.....
T Consensus 168 ~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 168 QGVEDAFYTLVREIR 182 (190)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986543
No 116
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.5e-19 Score=181.12 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=109.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+..+|+++|++|+|||||+++|.+..+.. ...|.+.... .+.+++ +.+.+|||||++.|..++..++..+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV 91 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCEEE--EEEETT--EEEEEEECCCSGGGTTSGGGGCTTC
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCCeE--EEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999999999876542 2234443322 333343 7899999999999998888899999
Q ss_pred CeEEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCC---CCCCCCcEEEe
Q 001915 567 DIAVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPE---DWGGDIPMVQI 637 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e---~~gg~ipvVeI 637 (996)
|++|+|+|+++...... ...+..+. ..++|+++|+||+|+... ..+++.+.+........ .....+++++|
T Consensus 92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence 99999999998643332 22222222 257899999999999653 23344333322110000 01134689999
Q ss_pred ccCCCCChhhHHHHHH
Q 001915 638 SALKGEKVDDLLETIM 653 (996)
Q Consensus 638 SAktGeGIdEL~eaIl 653 (996)
||++|.||+++|++|.
T Consensus 172 Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLS 187 (190)
T ss_dssp BTTTTBSHHHHHHHHH
T ss_pred ECCcCCCHHHHHHHHH
Confidence 9999999999999986
No 117
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=183.33 Aligned_cols=164 Identities=24% Similarity=0.289 Sum_probs=110.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+.++|+|+|++|+|||||+++|.+..+.....+.++.. +...+.+++..+.+.||||||++.|..++..++..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFEN---YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCE---EEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccce---EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC
Confidence 34456799999999999999999999877654433332222 122344566677899999999999998888899999
Q ss_pred CeEEEEEecCCCCChhH--HHHHHHHHHc--CCCEEEEecccCCCCCChhHHHHHHHhcCCCC----------CCCCCCC
Q 001915 567 DIAVIVVAADDGIRPQT--NEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMP----------EDWGGDI 632 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt--~E~I~~ak~~--~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~----------e~~gg~i 632 (996)
|++|+|+|+++....+. ..++..+... ++|+|+|+||+|+.... .....+....... ..+ +..
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~ 174 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRI-QAY 174 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHT-TCS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhc-CCC
Confidence 99999999987433222 2233344433 89999999999995421 1111111110000 001 123
Q ss_pred cEEEeccCCCCChhhHHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~la 656 (996)
+++++||++|.||++||++|....
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999997643
No 118
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.80 E-value=1.4e-19 Score=185.14 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=113.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|.+|+|||||+++|.+..+.....+.+... +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN---YTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee---EEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 456799999999999999999999887754444333222 23344556777889999999999999999999999999
Q ss_pred EEEEEecCCCCChhH--HHHHHHHHHc--CCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCC
Q 001915 569 AVIVVAADDGIRPQT--NEAIAHAKAA--GVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWG 629 (996)
Q Consensus 569 VILVVDAsdgv~~Qt--~E~I~~ak~~--~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~g 629 (996)
+|+|||+++...... ..++..+... ++|+|+|+||+|+... ..+.........+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG------- 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-------
Confidence 999999998544332 2233334333 7899999999999541 2223333333332
Q ss_pred CCCcEEEeccCCCCC-hhhHHHHHHHHH
Q 001915 630 GDIPMVQISALKGEK-VDDLLETIMLVA 656 (996)
Q Consensus 630 g~ipvVeISAktGeG-IdEL~eaIl~la 656 (996)
..++++|||++|.| |+++|++|....
T Consensus 175 -~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 175 -AEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp -CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 12799999999998 999999998654
No 119
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=182.85 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+..+|+|+|++|+|||||+++|.+..+.....+.+. + .+...+.+++..+.+.||||||++.|..++..++..+|
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~--~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-E--RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-E--EEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-e--eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 34568999999999999999999998766543333222 1 22334455677778999999999999999999999999
Q ss_pred eEEEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCCCh---------------hHHHHHHHhcCCCCCCC
Q 001915 568 IAVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANP---------------ERVMQELSSIGLMPEDW 628 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a~~---------------erv~~eL~~~gl~~e~~ 628 (996)
++|+|||+++....... .++..+.. .++|+|+|+||+|+..... ++........
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------- 180 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV------- 180 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-------
Confidence 99999999875433222 12333332 3789999999999954321 1111111111
Q ss_pred CCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 629 GGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 629 gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
+..++++|||++|.||+++|++|....
T Consensus 181 -~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 181 -GAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp -TCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 124799999999999999999997654
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.80 E-value=1.2e-19 Score=179.73 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=111.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|.+..+.....+.+... +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN---YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee---EEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 345789999999999999999999877654333322221 23344556777889999999999999988889999999
Q ss_pred EEEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCC
Q 001915 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWG 629 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~g 629 (996)
+|+|+|+++....... .++..+.. .++|+|+|+||+|+... ..++.......++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 154 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG------- 154 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------
Confidence 9999999874333322 22233333 37899999999999532 1122222222222
Q ss_pred CCCcEEEeccC-CCCChhhHHHHHHHHH
Q 001915 630 GDIPMVQISAL-KGEKVDDLLETIMLVA 656 (996)
Q Consensus 630 g~ipvVeISAk-tGeGIdEL~eaIl~la 656 (996)
.+++++|||+ +|.||+++|++|...+
T Consensus 155 -~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 -AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp -CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred -CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3579999999 6899999999997653
No 121
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=182.81 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=109.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++. .++...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV--EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------C--CEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc--eeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 45679999999999999999999987765544443333 3334444456666789999999999998888889999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHH---HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak---~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++....+.. .++..+. ..++|+++|+||+|+... ...+........ .++++++||++
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~SA~~ 171 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN---------ELMFLETSALT 171 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT---------TCEEEEECTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 9999999985433322 2222232 247899999999999532 223333333222 25799999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.||+++|++|....
T Consensus 172 g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 172 GENVEEAFLKCARTI 186 (200)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997654
No 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=3.6e-19 Score=178.56 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=106.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+..+|+|+|++|+|||||+++|....+.. . ..|.+... ..+. .....+.||||||++.|..++..++..+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~--~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNV--ETVE--YKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-E--EEETTEEE--EEEE--ETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-c--CCcCceeE--EEEE--ECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 4567899999999999999999998766542 1 22443222 2222 24578999999999999999999999999
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++|+|+|+++...... .+.+..+.. .++|+|+|+||+|+.... .+++...+...... ...+++++|||++
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR----SRTWYVQATCATQ 174 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS----SCCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc----CCceEEEECcCCC
Confidence 9999999988543322 223333322 378999999999996542 23333333221111 1236799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||++++++|...
T Consensus 175 g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 175 GTGLYDGLDWLSHE 188 (192)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999998743
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=2.7e-19 Score=203.74 Aligned_cols=222 Identities=21% Similarity=0.262 Sum_probs=154.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH----------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---------- 557 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~---------- 557 (996)
...++|+|+|++|+|||||+|+|.+... ..+..+|+|++.....+. +++ ..+.+|||||+..+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~--~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF--IDG--RKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE--ETT--EEEEESSCSCC-----------CCSC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE--ECC--EEEEEEECCCCccccccchhhHHHHH
Confidence 3568999999999999999999998765 367778888876544443 344 4689999999744332
Q ss_pred -HH-HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCC
Q 001915 558 -MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 558 -mr-~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~i 632 (996)
++ ..++..+|++++|+|+.++...+.......+...++|+|+|+||+|+.... .+++...+... +. +....
T Consensus 254 ~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~---~~~~~ 329 (439)
T 1mky_A 254 NYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREK-LY---FIDYS 329 (439)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH-CG---GGTTS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHH-hc---cCCCC
Confidence 22 246688999999999999988888777777888899999999999996432 22233333221 11 11246
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHHHH--------------hhhcCCCCCCcceEEEEeeecCCCcEEEEEEEc-CEecc
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAELQ--------------ELKANPHRNAKGTVIEAGLHKSKGPVATFILQN-GTLKK 697 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lael~--------------elk~~p~r~~~g~Vies~~dkgrG~Vat~lV~~-GtLk~ 697 (996)
+++++||++|.||++||+.|....+.. +.......+-...+.++.+...+++.+.++++. ..++.
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~ 409 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKN 409 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccCCH
Confidence 899999999999999999987654321 111111111455777888888889988888876 45666
Q ss_pred CcEEEEccccee-Eeecccccc
Q 001915 698 GDVVVCGEAFGK-IIGLNGVPI 718 (996)
Q Consensus 698 GD~VviG~~~gk-V~Gl~g~P~ 718 (996)
.+..++.+.+++ .+||.|+|+
T Consensus 410 ~y~r~l~~~~r~~~~~~~~~pi 431 (439)
T 1mky_A 410 PQKIFLRKLIRDYVFPFEGSPI 431 (439)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhhCCCCCCCE
Confidence 666677777788 899999986
No 124
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.80 E-value=3.3e-19 Score=174.13 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH------HHHHHhhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGAR 564 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~------~mr~rga~ 564 (996)
.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+. ++ +..+.+|||||++.|. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE--YN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEE--ET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEE--EC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 46899999999999999999998776666666666654433333 33 3579999999998774 34455553
Q ss_pred --cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 565 --VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 565 --~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
.+|++++|+|+++. .....++..+...++|+|+|+||+|+.... .......+... + .++++++||++
T Consensus 79 ~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~~SA~~ 148 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI------L--GVKVVPLSAAK 148 (165)
T ss_dssp HHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHH------H--TSCEEECBGGG
T ss_pred cCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHH------h--CCCEEEEEcCC
Confidence 89999999999862 233344555566789999999999984211 00011222221 1 15799999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|.||+++|++|..
T Consensus 149 ~~~v~~l~~~l~~ 161 (165)
T 2wji_A 149 KMGIEELKKAISI 161 (165)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
No 125
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.6e-19 Score=176.87 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+++|++|+|||||+++|.+..+. .. ..|.+.....+. ++ +..+.+|||||++.|..++..++..+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TT--KPTIGFNVETLS--YK--NLKLNVWDLGGQTSIRPYWRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EE--CSSTTCCEEEEE--ET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-cc--CCcCccceEEEE--EC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 46789999999999999999999876652 11 223333333332 33 4789999999999998888889999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHH----HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak----~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++....+. .+.+..+. ..++|+++|+||+|+.... .+++...+...... ...++++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK----DRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC----SSCEEEEEEBGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc----CCceEEEEccCCCC
Confidence 999999988644332 23333332 2578999999999996542 33343333221111 12358999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||++++++|....
T Consensus 165 ~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 165 EGITEGLDWLIDVI 178 (183)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999997654
No 126
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.80 E-value=4.7e-19 Score=217.17 Aligned_cols=118 Identities=31% Similarity=0.436 Sum_probs=95.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc----------------ccccCCceeeeceEEEEEe------------eCCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVP------------VDGKL 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va----------------~se~gGiTqdI~a~~V~i~------------idgk~ 541 (996)
+.++|+|+||+|||||||+++|+..... .....|+|.......+.+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4578999999999999999999853111 0123456665544444443 23446
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~ 607 (996)
+.++|||||||..|..++.++++.+|++|+|||+.+++..|+...+.++...++|+|+++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 789999999999999999999999999999999999999999999888888899999999999985
No 127
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.80 E-value=7.1e-19 Score=175.62 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=111.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+..+|+|+|.+|+|||||+++|....+.....+ |. +.+...+.+++..+.+.||||||++.|. +++.+|
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--Cc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 34567999999999999999999998776543332 32 2334555667777889999999999987 678899
Q ss_pred eEEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCC-----CChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 568 IAVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~-----a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
++|+|||+++....+. ..++..+.. .++|+|+|+||+|+.. ...+........++ .+++++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~e~ 159 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------RCTYYET 159 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--------TCEEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--------CCeEEEe
Confidence 9999999998554444 333344433 4689999999999842 12233333333322 3679999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++|.||+++|++|....
T Consensus 160 Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997653
No 128
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=178.82 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=111.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH-HHHHhhhcCCe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-MRARGARVTDI 568 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~-mr~rga~~ADi 568 (996)
..++|+|+|.+|+|||||+++|.+........++++.+ .+...+.+++..+.+.||||||++.|.. ++..++..+|+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPED--TYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTT--EEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccc--eEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45799999999999999999997544433344444433 3344445677778899999999998765 77788899999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++...... ..++..+.. .++|+|+|+||+|+... ..+......... .++++++||+
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~ 170 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL---------SCKHIETSAA 170 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT---------TCEEEEEBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh---------CCEEEEEcCC
Confidence 999999987433222 222333332 37899999999999642 222332222222 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||+++|++|+...
T Consensus 171 ~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997643
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.7e-19 Score=175.13 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=110.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|.+..+.....+.++.. +...+.+++..+.+.||||||++. ..++..++..+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST---YRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE---EEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCce---EEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 356799999999999999999999877654433332221 233344567778899999999988 7778888999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHH----HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~a----k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++...... ..++..+ ...++|+|+|+||+|+... ..++........ .++++++||+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 172 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL---------ACAFYECSAC 172 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH---------TSEEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh---------CCeEEEECCC
Confidence 999999987322211 1122222 2358999999999999542 223333322222 2579999999
Q ss_pred CCC-ChhhHHHHHHHHH
Q 001915 641 KGE-KVDDLLETIMLVA 656 (996)
Q Consensus 641 tGe-GIdEL~eaIl~la 656 (996)
+|. ||+++|++|....
T Consensus 173 ~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 173 TGEGNITEIFYELCREV 189 (196)
T ss_dssp TCTTCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 999 9999999997654
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=2.1e-19 Score=195.89 Aligned_cols=153 Identities=23% Similarity=0.246 Sum_probs=117.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc--------hHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~--------F~~mr~ 560 (996)
+..+|+|+|++|+|||||+|+|++..+. .+..+++|++.-... +......++||||||+.. |.....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i----~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI----LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE----EEETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE----EEeCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 4567999999999999999999988875 455667777532211 123456899999999765 566677
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc--CCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~--~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
.++..+|++|+|||++++....+...+..+... ++|+|+|+||+|+...... +...+... ....+++++|
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iS 153 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLS 153 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECC
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEe
Confidence 788999999999999998888877777777766 8999999999999643221 33333333 1235799999
Q ss_pred cCCCCChhhHHHHHHH
Q 001915 639 ALKGEKVDDLLETIML 654 (996)
Q Consensus 639 AktGeGIdEL~eaIl~ 654 (996)
|++|.|+++|++.|..
T Consensus 154 A~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 154 ALDERQVAELKADLLA 169 (301)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999864
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=1.3e-19 Score=196.98 Aligned_cols=156 Identities=19% Similarity=0.300 Sum_probs=113.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc-chH-HH-------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-AFG-AM------- 558 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE-~F~-~m------- 558 (996)
.+..+|+|+|++|+|||||+|+|++..+. .+..+++|++.....+ ......++||||||+. .+. .+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~----~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH----TEGAYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE----EETTEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE----EECCeeEEEEECcCCCccchhhHHHHHHHH
Confidence 35568999999999999999999988765 3455667765322222 2234679999999987 322 11
Q ss_pred HHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 559 r~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
...++..+|++++|+|+++ +..++...+..+...+.|+|+++||+|+.. +...+...+..+.- .++ ...++++|
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~---~~~-~~~~i~iS 155 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLAS---QMN-FLDIVPIS 155 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHHT---TSC-CSEEEECC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHHH---hcC-cCceEEEE
Confidence 2345678999999999988 888888888888777899999999999965 23333333332210 111 23699999
Q ss_pred cCCCCChhhHHHHHHH
Q 001915 639 ALKGEKVDDLLETIML 654 (996)
Q Consensus 639 AktGeGIdEL~eaIl~ 654 (996)
|++|.|+++|++.|..
T Consensus 156 A~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 156 AETGLNVDTIAAIVRK 171 (301)
T ss_dssp TTTTTTHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999864
No 132
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=4.9e-19 Score=192.90 Aligned_cols=157 Identities=29% Similarity=0.409 Sum_probs=120.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc----------hHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAM 558 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~----------F~~m 558 (996)
.+..|+|+|++|+|||||+|+|++..+. .+..+++|++....... . +....+.||||||+.. |...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~--~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKN--I-PNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--E-TTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEe--c-CCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 3457999999999999999999988876 45667777764332222 1 2256899999999844 3366
Q ss_pred HHHhhhcCCeEEEEEecCCCCChhHHHH-HHHHHHcCCCEEEEecccCCC-C-CChhHHHHHHHhcCCCCCCCCCCCcEE
Q 001915 559 RARGARVTDIAVIVVAADDGIRPQTNEA-IAHAKAAGVPIVIAINKIDKD-G-ANPERVMQELSSIGLMPEDWGGDIPMV 635 (996)
Q Consensus 559 r~rga~~ADiVILVVDAsdgv~~Qt~E~-I~~ak~~~IPIIVVINKiDL~-~-a~~erv~~eL~~~gl~~e~~gg~ipvV 635 (996)
...++..+|++|+|+|++++...++... +..+...++|+|+|+||+|+. . .........+... ++...+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~------~~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK------HPELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH------CTTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh------ccCCCeEE
Confidence 6778899999999999999998888887 777777899999999999996 2 2223334444432 11246899
Q ss_pred EeccCCCCChhhHHHHHHHH
Q 001915 636 QISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 636 eISAktGeGIdEL~eaIl~l 655 (996)
++||++|.|+++|+++|...
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 160 PISALKGANLDELVKTILKY 179 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 133
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-19 Score=184.98 Aligned_cols=156 Identities=20% Similarity=0.214 Sum_probs=109.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....+.++ ..+....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--CSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--ceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 3457899999999999999999998776644443333 33444445556666789999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|||||+++....+.. .++..+.. .++|+|||+||+|+... ..+......... .++++++||++
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 159 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN---------QLLFTETSALN 159 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT---------TCEEEECCCC-
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEeCCC
Confidence 9999999885443332 22333333 37899999999999532 223333322222 25799999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.||+++|++|...
T Consensus 160 ~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 160 SENVDKAFEELINT 173 (223)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
No 134
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=182.67 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=109.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|.+|+|||||+++|.+..+.....+.+... + .....+++..+.+.||||||++.|..++..++..+|+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENT--Y-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEE--E-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceE--E-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 456799999999999999999999887764443332222 2 3333445667789999999999999999999999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHH----HHcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~a----k~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+|+|||+++....+.. .++..+ ...++|+|+|+||+|+... ............ .++++++||+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~ 169 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW---------GATFMESSAR 169 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECCTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh---------CCeEEEEeCC
Confidence 9999999974332222 222222 2347899999999998532 222222222222 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||+++|++|....
T Consensus 170 ~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEI 185 (201)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 135
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.79 E-value=6.5e-19 Score=172.09 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
+..+|+++|++|+|||||+++|.+..+.. ..+ |.. ..+...+.+++..+.+.||||||++.+ .+++.+|++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEK--TES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSS--CSS-SEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCC--Ccc-eeEEEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEE
Confidence 45789999999999999999999877654 222 222 223444555677788999999999873 466789999
Q ss_pred EEEEecCCCCChhHHHH----HHHHHH---cCCCEEEEecccCCCC-----CChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 570 VIVVAADDGIRPQTNEA----IAHAKA---AGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~E~----I~~ak~---~~IPIIVVINKiDL~~-----a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
|+|||+++......... +..+.. .++|+|+|+||+|+.. ...+.........+ .++++++
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~ 148 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK--------RCSYYET 148 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--------SEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--------CCeEEEE
Confidence 99999998544333322 222222 3689999999999832 12233333222221 3579999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++|.||+++|++|....
T Consensus 149 Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHH
Confidence 9999999999999997543
No 136
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=2.7e-19 Score=177.09 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+++|++|+|||||+++|....+.. .. .|.+.....+. + ....+.||||||++.|..++..++..+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~--~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TV--PTVGVNLETLQ--Y--KNISFEVWDLGGQTGVRPYWRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-EC--SSTTCCEEEEE--E--TTEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cC--CCCceEEEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence 467899999999999999999998766542 22 23333333333 2 35689999999999998888888999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH----cCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt-~E~I~~ak~----~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|+++...... .+.+..+.. .++|+++|+||+|+.... .+++...+....... ..+++++|||++|
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN----RTWTIVKSSSKTG 168 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS----SCEEEEECCTTTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC----CceEEEEccCCCc
Confidence 999999998644332 223333322 378999999999996543 233443332211111 2358999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||++++++|....
T Consensus 169 ~gi~~l~~~l~~~i 182 (189)
T 2x77_A 169 DGLVEGMDWLVERL 182 (189)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999997654
No 137
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.79 E-value=1.1e-19 Score=184.16 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=109.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeC-CccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~id-gk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
...+|+|+|++|+|||||+++|.+..+...... |.+.......+... +..+.+.||||||++.|..++..++..+|+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNA--TVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEET--TTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 457899999999999999999997765533222 22222223333222 233779999999999999888999999999
Q ss_pred EEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 569 AVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~----E~I~~ak~~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
+|+|+|++++...+.. ..+......++|+|+|+||+|+.... .......+... ..++++++||++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~g 159 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG--------KNYEYFEISAKTA 159 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT--------CCCEEEEEBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--------cCCcEEEEecCCC
Confidence 9999999986544333 22333333468999999999996431 11111122111 1368999999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.||+++|++|....
T Consensus 160 ~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 160 HNFGLPFLHLARIF 173 (218)
T ss_dssp BTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=2.2e-20 Score=215.20 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=141.2
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCccccccccCCHHHHHHHHHhcCCceeecChhhhHHHhhh-cccCChhhhhcccC
Q 001915 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARK-KDLFDEEDLDKLED 489 (996)
Q Consensus 411 ~itv~eLa~~l~~~~~eiik~L~~~G~~~~inq~Ld~e~~elia~E~g~~v~~~~~~~~e~ll~~-~~~l~ee~~~~l~~ 489 (996)
.+++.+|.+.++....++.+.|+.+ ...++..||++. .+ .+.....+. ..+..+... ..............
T Consensus 151 ~~a~~~l~g~~~~~~~~~r~~l~~~--~a~iEa~iDf~e--d~-~~~~~~~~~---~~i~~l~~~l~~~~~~~~~~~~~r 222 (462)
T 3geh_A 151 QTALAGLQGKLAHPIRQLRANCLDI--LAEIEARIDFEE--DL-PPLDDEAII---SDIENIAAEISQLLATKDKGELLR 222 (462)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHH--HHHHHHHTTSSS--SS-CCCCTTTHH---HHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHH--HHHHHhhccccc--cC-ChhhHHHHH---HHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3678889999888888888888876 444555555533 00 000000000 011111100 11222233344445
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHH--------H
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMR--------A 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr--------~ 560 (996)
..++|+|+|++|+|||||+|+|.+..+. ....+++|++.....+.+ + +..++||||||+..+.... .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~--g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--G--GIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--T--TEEEEECC--------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE--C--CEEEEEEECCccccchhHHHHHHHHHHh
Confidence 6788999999999999999999976554 667788888865544443 3 3679999999986654322 2
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
.++..+|++|+|+|++++...+..+++..+. ..|+|+|+||+|+....... ....+....+++++||+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~~~~~~i~iSAk 366 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPENITQIVHTAAA 366 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCTTCCCEEEEBTT
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhccCCcEEEEECC
Confidence 3568899999999999988888877776664 47999999999996432111 11222245789999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.||++|+++|...
T Consensus 367 tg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 367 QKQGIDSLETAILEI 381 (462)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 139
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.79 E-value=5.9e-19 Score=173.38 Aligned_cols=155 Identities=24% Similarity=0.309 Sum_probs=107.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCC-----------ccchHHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-----------HEAFGAMRA 560 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG-----------hE~F~~mr~ 560 (996)
++|+|+|++|+|||||+++|.+..+.....+++|.+...+. +. .+.|||||| ++.|..++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~----~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE----WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE----ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe----cC----CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 58999999999999999999988877766777776542222 22 699999999 677887777
Q ss_pred Hhhhc-C---CeEEEEEecCC-----------CCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCC
Q 001915 561 RGARV-T---DIAVIVVAADD-----------GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP 625 (996)
Q Consensus 561 rga~~-A---DiVILVVDAsd-----------gv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~ 625 (996)
.++.. + +++++|+|... +...++.+.+..+...++|+++|+||+|+.....+........++...
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh
Confidence 66654 4 55556666542 111223344555666789999999999996543222333233344321
Q ss_pred CCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 626 EDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 626 e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
..| ..+++++||++|.||+++|++|....
T Consensus 154 ~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 154 SEI--DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp GGH--HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcc--CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 111 24689999999999999999997653
No 140
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=6e-20 Score=187.22 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=110.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|+...+.....+ |.+.+.......+++..+.+.||||||++.|..++..++..+|+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEET--TTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4567999999999999999999665443322111 22222334445556777889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHH-HHHHHHH--cCCCEEEEecccCCCCCChhH-HHHHHHhcCCCCCCCCCCCcEEEeccCCCCC
Q 001915 569 AVIVVAADDGIRPQTNE-AIAHAKA--AGVPIVIAINKIDKDGANPER-VMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E-~I~~ak~--~~IPIIVVINKiDL~~a~~er-v~~eL~~~gl~~e~~gg~ipvVeISAktGeG 644 (996)
+|+|||+++....+... ++..+.. .++|+|+|+||+|+.+..... ........ .+++++|||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK---------NLQYYDISAKSNYN 161 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHH---------TCEEEECBGGGTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 99999999854433322 2222322 378999999999996533211 11111111 25799999999999
Q ss_pred hhhHHHHHHHH
Q 001915 645 VDDLLETIMLV 655 (996)
Q Consensus 645 IdEL~eaIl~l 655 (996)
|+++|++|...
T Consensus 162 i~~l~~~l~~~ 172 (221)
T 3gj0_A 162 FEKPFLWLARK 172 (221)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 141
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=8.6e-19 Score=180.39 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=109.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc------cc----hH
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EA----FG 556 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh------E~----F~ 556 (996)
+..+.++|+|+|.+|+|||||+++|.+..+......++|.++....+.. ....+.||||||+ +. |.
T Consensus 25 ~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 25 INPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH----KLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE----TTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec----CCCeEEEEECCCCcCcccchhhhHHHH
Confidence 3456789999999999999999999988876666667777654433322 3467999999998 44 33
Q ss_pred HHHHHhhhcCCeEEEEEecCCCCChh---HHHHHHHHHHc--CCCEEEEecccCCCCCC-h-hH---HHHHHHhcCCCCC
Q 001915 557 AMRARGARVTDIAVIVVAADDGIRPQ---TNEAIAHAKAA--GVPIVIAINKIDKDGAN-P-ER---VMQELSSIGLMPE 626 (996)
Q Consensus 557 ~mr~rga~~ADiVILVVDAsdgv~~Q---t~E~I~~ak~~--~IPIIVVINKiDL~~a~-~-er---v~~eL~~~gl~~e 626 (996)
.+ ..++..+|++|+|+|+++..... +.+.+..+... ++|+|+|+||+|+.... . .. ....+....
T Consensus 101 ~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---- 175 (228)
T 2qu8_A 101 TI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV---- 175 (228)
T ss_dssp HH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC----
T ss_pred HH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc----
Confidence 33 33468889999999999865533 34455555554 89999999999996432 1 11 122222211
Q ss_pred CCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 627 DWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 627 ~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
+..+++++|||++|.||+++|++|....
T Consensus 176 --~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 --KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp --CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 1126799999999999999999997654
No 142
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=4.2e-19 Score=180.99 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|.+|+|||||+++|.+..+.....+.+... +...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN---YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE---EEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee---EEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 456799999999999999999999877754433332222 23344556777889999999999999998889999999
Q ss_pred EEEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEecccCCCCC---------------ChhHHHHHHHhcCCCCCCCC
Q 001915 569 AVIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWG 629 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~--E~I~~ak~--~~IPIIVVINKiDL~~a---------------~~erv~~eL~~~gl~~e~~g 629 (996)
+|+|||+++....... .++..+.. .++|+|+|+||+|+... ..++........+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 175 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG------- 175 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------
Confidence 9999999874332222 22233333 37899999999999532 1122222222222
Q ss_pred CCCcEEEeccC-CCCChhhHHHHHHHHH
Q 001915 630 GDIPMVQISAL-KGEKVDDLLETIMLVA 656 (996)
Q Consensus 630 g~ipvVeISAk-tGeGIdEL~eaIl~la 656 (996)
.+++++|||+ +|.||+++|+.|...+
T Consensus 176 -~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 -AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp -CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 2579999999 6899999999997653
No 143
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=174.25 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=107.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|.+|+|||||+++|.+..+.....+ |.... +.....+++..+.+.||||||++.|..+ ..++..+|+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~--t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP--NLEDT-YSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT--TCCEE-EEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC--Cccce-eeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 3457899999999999999999998776543333 22221 2334445677788999999999988765 568899999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH------cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA------AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~------~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
+|+|||+++....+.. .++..+.. .++|+|+|+||+|+... ..++........+ +++++||
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~S 165 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG---------CLFFEVS 165 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---------CEEEECC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC---------CcEEEEe
Confidence 9999999974332222 22222222 48999999999999532 2333333333332 5799999
Q ss_pred c-CCCCChhhHHHHHHHH
Q 001915 639 A-LKGEKVDDLLETIMLV 655 (996)
Q Consensus 639 A-ktGeGIdEL~eaIl~l 655 (996)
| ++|.||+++|++|...
T Consensus 166 a~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp SSSCSHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHH
Confidence 9 8999999999999754
No 144
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.78 E-value=5e-19 Score=177.48 Aligned_cols=159 Identities=15% Similarity=0.178 Sum_probs=104.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee-CCccccEEEEeCCCccchHHHH---HHhh
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMR---ARGA 563 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i-dgk~~~ItfIDTPGhE~F~~mr---~rga 563 (996)
..+.++|+++|.+|+|||||+++|.+..... ...+.+ .....+...+ ++..+.+.||||||++.|..++ ..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLE--STNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCC--CCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeec--cccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3467899999999999999999887643222 211111 1111222222 2566889999999999998777 7889
Q ss_pred hcCCeEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCCCCh----hH-H----HHHHHhcCCCCCCCC
Q 001915 564 RVTDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGANP----ER-V----MQELSSIGLMPEDWG 629 (996)
Q Consensus 564 ~~ADiVILVVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~a~~----er-v----~~eL~~~gl~~e~~g 629 (996)
+.+|++|+|||+++........+...+. ..++|+++|+||+|+...+. .+ + ..++..... ..
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~--~~-- 169 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL--EK-- 169 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC--TT--
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh--hc--
Confidence 9999999999999873222222222222 24789999999999854211 11 1 112222111 11
Q ss_pred CCCcEEEeccCCCCChhhHHHHHHH
Q 001915 630 GDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 630 g~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
..++|++|||++ .||+++|+.|+.
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHHHH
Confidence 246899999999 999999999874
No 145
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=4.6e-19 Score=175.15 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH----H--H--HH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG----A--M--RA 560 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~----~--m--r~ 560 (996)
+..+|+|+|++|+|||||+++|.+.... ....+++|++.....+ .+++ ..+.+|||||++.+. . + ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI--HIDG--MPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE--EETT--EEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEE--EECC--eEEEEEECCCcccchhHHHHHHHHHHH
Confidence 3468999999999999999999977643 4556677766433333 3343 468999999986531 1 1 12
Q ss_pred HhhhcCCeEEEEEecCCCCChhHHHHHHHHHH---cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA---AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 561 rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~---~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
.++..+|++|+|+|+++.......+++..+.. .++|+|+|+||+|+.....+ +.. . ...+++++
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~------~--~~~~~~~~ 145 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSE------V--NGHALIRL 145 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEE------E--TTEEEEEC
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhh------c--cCCceEEE
Confidence 35789999999999998766555544444443 36899999999998432110 000 0 13579999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++|.||++||++|....
T Consensus 146 SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999997553
No 146
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=1.2e-18 Score=171.53 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=110.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH------HHHHHhh
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGA 563 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~------~mr~rga 563 (996)
+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+. ++ +..+.||||||++.|. .++..++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFE--YN--GEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEE--ET--TEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEE--eC--CcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 557999999999999999999998777666677777665433333 23 4689999999998874 4455555
Q ss_pred h--cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 564 R--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 564 ~--~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
. .+|++++|+|+++ ......++..+...++|+|+++||+|+.... .......+... + .++++++||+
T Consensus 82 ~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~ 151 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI------L--GVKVVPLSAA 151 (188)
T ss_dssp HHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHH------H--TSCEEECBGG
T ss_pred hccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHH------h--CCCeEEEEec
Confidence 3 5999999999976 2334455556666789999999999984211 00111222221 0 2579999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||+++|++|....
T Consensus 152 ~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 152 KKMGIEELKKAISIAV 167 (188)
T ss_dssp GTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997653
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.6e-18 Score=197.44 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=107.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc---------hHHHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRAR 561 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~---------F~~mr~r 561 (996)
|+|+|+|++|+|||||+|+|.+.+.. +...+|+|++.....+. +++ ..+.||||||++. +..+...
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~--~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVE--WYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEE--ETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEE--ECC--eEEEEEECCCccccccchHHHHHHHHHHH
Confidence 68999999999999999999987754 56778899887655544 333 5699999999654 3455667
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++..+|++|+|+|+.+++...+.+....++..++|+|+|+||+|+..........++...++ .+++++||++
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~--------~~~~~iSA~~ 149 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGF--------GEPIPVSAEH 149 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSS--------CSCEECBTTT
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCC--------CCEEEEeccC
Confidence 88999999999999999888877777777778999999999999842100111022222221 2579999999
Q ss_pred CCChhhHHHHHHHHH
Q 001915 642 GEKVDDLLETIMLVA 656 (996)
Q Consensus 642 GeGIdEL~eaIl~la 656 (996)
|.|+++|+++|....
T Consensus 150 g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 150 NINLDTMLETIIKKL 164 (439)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999997553
No 148
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=1.6e-18 Score=184.65 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=111.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH----------HHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA----------MRAR 561 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~----------mr~r 561 (996)
++|+++|++|+|||||+|+|.+.....+..+|+|.+.....+. ++ +..+.||||||+..|.. +...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~--~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFL--LG--EHLIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEE--ET--TEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEE--EC--CeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 6899999999999999999999887778888888775444433 23 34799999999887754 4455
Q ss_pred hh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEec
Q 001915 562 GA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQIS 638 (996)
Q Consensus 562 ga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeIS 638 (996)
++ ..+|++|+|+|+++ ..........+...++|+|+|+||+|+.... .......+... + .++++++|
T Consensus 78 ~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~------l--g~~vi~~S 147 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL------L--GCSVIPIQ 147 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH------H--CSCEEECB
T ss_pred HHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH------c--CCCEEEEE
Confidence 55 78999999999987 3444555666777799999999999984211 11112222221 1 26899999
Q ss_pred cCCCCChhhHHHHHH
Q 001915 639 ALKGEKVDDLLETIM 653 (996)
Q Consensus 639 AktGeGIdEL~eaIl 653 (996)
|++|.||++|+++|.
T Consensus 148 A~~g~gi~el~~~i~ 162 (256)
T 3iby_A 148 AHKNIGIPALQQSLL 162 (256)
T ss_dssp GGGTBSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999999986
No 149
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=2.9e-18 Score=182.65 Aligned_cols=153 Identities=22% Similarity=0.233 Sum_probs=112.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH------HHHHhh
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA 563 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~------mr~rga 563 (996)
+.++|+++|++|+|||||+++|.+..+..+..+|+|.+.....+. ..+..+.||||||+..|.. +...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFT----YKGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEE----ETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEE----ECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 457899999999999999999998887777788888765433332 2346899999999887653 334444
Q ss_pred --hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 564 --RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 564 --~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
..+|++|+|+|+++. ......+..+...++|+|+|+||+|+.... .......+... + .++++++||+
T Consensus 80 ~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~------l--g~~vi~~SA~ 149 (258)
T 3a1s_A 80 LKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKH------L--GIPVVFTSSV 149 (258)
T ss_dssp HHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHH------H--CSCEEECCTT
T ss_pred hhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHH------c--CCCEEEEEee
Confidence 589999999999873 334445566677799999999999983211 00011222221 1 2689999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLVA 656 (996)
Q Consensus 641 tGeGIdEL~eaIl~la 656 (996)
+|.||++|+++|...+
T Consensus 150 ~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYA 165 (258)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999997653
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=2.7e-19 Score=207.08 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=118.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc-chH-------
Q 001915 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-AFG------- 556 (996)
Q Consensus 486 ~l~~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE-~F~------- 556 (996)
...++.++|+|+|.+|+|||||+|+|.+..+ .+...+++|+++....+.+ + +..+.||||||+. .+.
T Consensus 238 ~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~--~--g~~~~l~DTaG~~~~~~~~ve~~g 313 (482)
T 1xzp_A 238 ILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--R--GILFRIVDTAGVRSETNDLVERLG 313 (482)
T ss_dssp HHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--T--TEEEEEEESSCCCSSCCTTCCCCC
T ss_pred hhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec--C--CeEEEEEECCCccccchhhHHHHH
Confidence 3344568999999999999999999998764 4677889999876655543 3 4579999999987 543
Q ss_pred -HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC-ChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 557 -AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 557 -~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
.....++..+|++|+|||++++...+..+.+..+ .++|+|+|+||+|+... +.+++... . + ..+++
T Consensus 314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~-~--~-------~~~~~ 381 (482)
T 1xzp_A 314 IERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNK-L--G-------TDRHM 381 (482)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHH-H--T-------CSTTE
T ss_pred HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHH-h--c-------CCCcE
Confidence 2345678999999999999998777777666555 48899999999999643 22222211 1 1 13679
Q ss_pred EEeccCCCCChhhHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~l 655 (996)
++|||++|.||++|+++|...
T Consensus 382 i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 382 VKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp EEEEGGGTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999764
No 151
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=1.8e-18 Score=185.42 Aligned_cols=150 Identities=17% Similarity=0.281 Sum_probs=111.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH----------HH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA----------MR 559 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~----------mr 559 (996)
+.++|+++|++|+|||||+|+|.+.....+..+|+|.+.....+. ..+..+.||||||+..|.. ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~----~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~ 77 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEE----CSSCEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEE----eCCCceEEEECcCCCccccccccCCHHHHHH
Confidence 457999999999999999999999887778888888775433333 2345799999999887662 22
Q ss_pred HHhh--hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 560 ARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 560 ~rga--~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
..++ ..+|++|+|+|+++ ..........+...++|+|+|+||+|+.... .......+... + .+++++
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~------l--g~~~i~ 147 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSAR------L--GCPVIP 147 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHH------H--TSCEEE
T ss_pred HHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHh------c--CCCEEE
Confidence 2333 68999999999987 3445556666777899999999999984211 11112222221 1 268999
Q ss_pred eccCCCCChhhHHHHHH
Q 001915 637 ISALKGEKVDDLLETIM 653 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl 653 (996)
+||++|.||++|+++|.
T Consensus 148 ~SA~~g~gi~el~~~i~ 164 (274)
T 3i8s_A 148 LVSTRGRGIEALKLAID 164 (274)
T ss_dssp CCCGGGHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 99999999999999885
No 152
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=7.4e-18 Score=174.43 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=107.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-hHHHHHHhhhcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTD 567 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-F~~mr~rga~~AD 567 (996)
..++|+|+|.+|+|||||+++|.+.... ......+ ...++...+.+++..+.+.+|||+|++. +..++..+++.+|
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~--g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL--GEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---C--CTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcc--ceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 4478999999999999999999864432 2222222 2334445555677777889999999887 5666667778999
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHH----cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I~~ak~----~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|||+++....... +++..+.. .++|+|+|+||+|+... ..++........ .+++++|||
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~---------~~~~~e~SA 184 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF---------DCKFIETSA 184 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH---------TCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc---------CCEEEEEeC
Confidence 99999999874332222 22222322 37899999999999531 122211111122 257999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||+++|++|....
T Consensus 185 k~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998654
No 153
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.75 E-value=3.8e-20 Score=185.77 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=105.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+.++|+|+|++|+|||||+++|.+..+.....++++.+. ....+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF--KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE--EEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE--EEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 3457999999999999999999998776655444444443 33444456666789999999999999888889999999
Q ss_pred EEEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 569 AVIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
+|+|||+++....... .++..+.. .++|+|+|+||+|+.... .+......... .++++++||++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~vSA~~ 179 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL---------GIPFLETSAKN 179 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT---------TCCBCCCCC--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc---------CCeEEEEECCC
Confidence 9999999985443332 22333332 278999999999995422 11222222221 25799999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|.||+++|++|..
T Consensus 180 g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 180 ATNVEQSFMTMAA 192 (199)
T ss_dssp -HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999863
No 154
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.61 E-value=5.9e-20 Score=184.73 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.+..+|+|+|++|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..++..+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFD--NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 4678999999999999999999987666433222 2222 122233345666778899999999999999999999999
Q ss_pred EEEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCCh-hHHHH-----HHH--hcCCCCCCCCCCCcEEE
Q 001915 569 AVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGANP-ERVMQ-----ELS--SIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~~-erv~~-----eL~--~~gl~~e~~gg~ipvVe 636 (996)
+|+|+|+++....+.. .++..+... ++|+|+|+||+|+..... ..... ... ........+ +..++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 183 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLE 183 (204)
Confidence 9999999886544332 233333333 789999999999954221 00000 000 000000111 1237999
Q ss_pred eccCCCCChhhHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIML 654 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~ 654 (996)
|||++|.||+++|++|..
T Consensus 184 vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIR 201 (204)
Confidence 999999999999999864
No 155
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=6.1e-18 Score=181.97 Aligned_cols=149 Identities=22% Similarity=0.245 Sum_probs=109.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH------HHHHHhhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGAR 564 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~------~mr~rga~ 564 (996)
.++|+++|++|+|||||+++|.+.....+..+|+|.+... ..+.. +..+.||||||++.|. .++..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~----~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS----GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE----EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE----EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 4689999999999999999999877666777788866422 22344 6789999999998875 45555554
Q ss_pred --cCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 565 --VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 565 --~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
.+|++|+|+|+++. .....++..+...++|+|+|+||+|+.... .......+... + .++++++||++
T Consensus 78 ~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~------l--g~~vi~~SA~~ 147 (272)
T 3b1v_A 78 SQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYH------L--GVPVVATSALK 147 (272)
T ss_dssp TTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHH------H--TSCEEECBTTT
T ss_pred cCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHH------c--CCCEEEEEccC
Confidence 69999999999872 333445555666799999999999983210 00111222221 0 26899999999
Q ss_pred CCChhhHHHHHHH
Q 001915 642 GEKVDDLLETIML 654 (996)
Q Consensus 642 GeGIdEL~eaIl~ 654 (996)
|.||++||++|..
T Consensus 148 g~gi~el~~~i~~ 160 (272)
T 3b1v_A 148 QTGVDQVVKKAAH 160 (272)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
No 156
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.75 E-value=6.4e-18 Score=181.18 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=113.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
...+.++|+++|.+|+|||||+++|.+..+..... +++.+ .+...+.+++..+.+.||||||++.|..++..++..+
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~-~t~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-PTVFD--NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC-CCSEE--EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCCCcccC-Ccccc--eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC
Confidence 34567899999999999999999999876644333 33332 2233344567777888999999999999998999999
Q ss_pred CeEEEEEecCCCCChhHH--HHHHHHHHc--CCCEEEEecccCCCCCC---------------hhHHHHHHHhcCCCCCC
Q 001915 567 DIAVIVVAADDGIRPQTN--EAIAHAKAA--GVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPED 627 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~--E~I~~ak~~--~IPIIVVINKiDL~~a~---------------~erv~~eL~~~gl~~e~ 627 (996)
|++|+|||+++....... .++..+... ++|+|+|+||+|+.... .+.........
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 301 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI------ 301 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT------
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc------
Confidence 999999999985443332 223333333 79999999999985321 11111111111
Q ss_pred CCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 628 ~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+..++++|||++|.||+++|++|...
T Consensus 302 --~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 302 --GAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp --TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 12479999999999999999998754
No 157
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.74 E-value=5.9e-18 Score=170.34 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=103.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-hHHHHHHhhhcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTD 567 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-F~~mr~rga~~AD 567 (996)
..++|+|+|.+|+|||||+++|.+.... ......++ .+++...+.+++..+.+.+|||+|++. +..++..+++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG--EDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGC--TTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccc--eeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3478999999999999999999854322 22222233 234444455677777889999999776 4445666778899
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHH----HcCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 568 IAVIVVAADDGIRPQTN-EAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 568 iVILVVDAsdgv~~Qt~-E~I~~ak----~~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
++|+|||+++....... +++..+. ..++|+|+|+||+|+... ..+... .+... ..+++++|||
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a~~--------~~~~~~e~SA 153 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AXAVV--------FDXKFIETSA 153 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HHHHH--------TTCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HHHHH--------hCCceEEecc
Confidence 99999999974333222 2222222 237899999999998531 111111 11111 1257999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 001915 640 LKGEKVDDLLETIMLVA 656 (996)
Q Consensus 640 ktGeGIdEL~eaIl~la 656 (996)
++|.||+++|++|....
T Consensus 154 ~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999997654
No 158
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=1.1e-17 Score=178.03 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH------HHHHhh
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA 563 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~------mr~rga 563 (996)
+.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+. + .+..+.||||||+..|.. +...++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 77 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIME--Y--REKEFLVVDLPGIYSLTAHSIDELIARNFI 77 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEE--E--TTEEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEE--E--CCceEEEEeCCCccccccCCHHHHHHHHhh
Confidence 457899999999999999999999888777888888775443333 2 335699999999887765 444455
Q ss_pred --hcCCeEEEEEecCCCCChhHHHHHHHHHHcC-CCEEEEecccCCCC---CChhHHHHHHHhcCCCCCCCCCCCcEEEe
Q 001915 564 --RVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (996)
Q Consensus 564 --~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~-IPIIVVINKiDL~~---a~~erv~~eL~~~gl~~e~~gg~ipvVeI 637 (996)
..+|++|+|+|+++. ......+..+...+ +|+++|+||+|+.. ...+ ...+... + .++++++
T Consensus 78 ~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~l~~~------l--g~~~~~~ 145 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID--IKKMRKE------L--GVPVIPT 145 (271)
T ss_dssp HTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC--HHHHHHH------H--SSCEEEC
T ss_pred hccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH--HHHHHHH------c--CCcEEEE
Confidence 689999999999874 34455556666667 99999999999732 1111 2222221 1 2689999
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 001915 638 SALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 638 SAktGeGIdEL~eaIl~la 656 (996)
||++|.|+++++++|....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 9999999999999997653
No 159
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=2.9e-18 Score=195.08 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=104.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc--------chHHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE--------AFGAMRAR 561 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE--------~F~~mr~r 561 (996)
.++|+|+|++|+|||||+|+|.+.++. ....+|+|++..... ....+..+.||||||++ .|..++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~----~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS----AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEE----CTTCSSCCEEEC---------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEE----EEECCceEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 378999999999999999999987665 566778888753322 34445689999999985 56777778
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++..+|++|+|+|+.++....+.+....+...++|+|+|+||+|+..... . ...+. .++ ..+++++||++
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~--~~~~~--~lg-~~~~~~iSA~~ 148 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----N--IYDFY--SLG-FGEPYPISGTH 148 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------C--CCSSG--GGS-SCCCEECBTTT
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----h--HHHHH--HcC-CCCeEEEeCcC
Confidence 88999999999999999998888888888888999999999999853210 0 01111 111 12689999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.|+++|+++|...
T Consensus 149 g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 149 GLGLGDLLDAVAEH 162 (436)
T ss_dssp TBTHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHh
Confidence 99999999998643
No 160
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=1.5e-18 Score=197.87 Aligned_cols=153 Identities=22% Similarity=0.363 Sum_probs=113.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHH-------HHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-------RAR 561 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~m-------r~r 561 (996)
..++|+|+|++|||||||+++|.+..+. .....++|.+.....+.+ .+. ..++|||||||+.|..+ ...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~--~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL--HPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE--TTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE--CCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4578999999999999999999987764 556778888766655544 332 37999999999877543 445
Q ss_pred hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCC
Q 001915 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAkt 641 (996)
++..+|++|||+|+ +...++.+++..+...++|+|+|+||+|+......+...++.. .+ .++++++||++
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~------~~--g~~v~~vSAkt 179 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES------RY--EAKVLLVSALQ 179 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC------CT--TCCCCCCSSCC
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH------Hc--CCCEEEEECCC
Confidence 77899999999999 7788889999999999999999999999976655433333322 12 36899999999
Q ss_pred CCChhhHHHHHHHH
Q 001915 642 GEKVDDLLETIMLV 655 (996)
Q Consensus 642 GeGIdEL~eaIl~l 655 (996)
|.|++++|++|...
T Consensus 180 g~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 180 KKGFDDIGKTISEI 193 (423)
T ss_dssp TTSTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999754
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.74 E-value=5e-18 Score=168.59 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=100.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee---CCccccEEEEeCCCccchHHHHHHhhhcCC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV---DGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i---dgk~~~ItfIDTPGhE~F~~mr~rga~~AD 567 (996)
..+|+|+|.+|+|||||+++|.+...........|.++.+....+.+ ++..+.+.+|||||++.|..++..++..+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 36899999999999999999987521111111223333333333322 234678999999999999988888899999
Q ss_pred eEEEEEecCCCC-Ch-hHHHHHHHHHH--cCCCEEEEecccCCCCCChh-HHHHHHHhcCCCCCCCCCCCc----EEEec
Q 001915 568 IAVIVVAADDGI-RP-QTNEAIAHAKA--AGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIP----MVQIS 638 (996)
Q Consensus 568 iVILVVDAsdgv-~~-Qt~E~I~~ak~--~~IPIIVVINKiDL~~a~~e-rv~~eL~~~gl~~e~~gg~ip----vVeIS 638 (996)
++++|+|++++. .. ....++..+.. .++|+|+|+||+|+...... ........ .+. ..+ .++ ++++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~S 157 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK-ELL-NKR--GFPAIRDYHFVN 157 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHH-HTT-TCT--TSCEEEEEEECC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHH-HHH-Hhc--CCcchhheEEEe
Confidence 999999998853 11 12233333332 37899999999999542111 01111111 111 111 233 99999
Q ss_pred cCCCC-ChhhHHHHHHHH
Q 001915 639 ALKGE-KVDDLLETIMLV 655 (996)
Q Consensus 639 AktGe-GIdEL~eaIl~l 655 (996)
|++|. |+++|++.|...
T Consensus 158 a~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 158 ATEESDALAKLRKTIINE 175 (184)
T ss_dssp TTSCCHHHHHHHHHHHHH
T ss_pred cccCchhHHHHHHHHHHH
Confidence 99997 999999998754
No 162
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.7e-17 Score=190.68 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=113.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~A 566 (996)
+..+..+|+|+|.+|+|||||+++|.+..+.. . ..|.++....+ +..++.+.||||||++.|..++..++..+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~--~~T~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 390 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-T--IPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGT 390 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-C--CCCSSEEEEEE----ESSSCEEEEEEECCCGGGSGGGGGGGTTC
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCC-c--CCccceeEEEE----EeCCEEEEEEECCCcHHHHHHHHHHhccC
Confidence 34456799999999999999999999877432 2 23555444333 33557899999999999999999999999
Q ss_pred CeEEEEEecCCCCChhHHH-HHHHHH----HcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 567 DIAVIVVAADDGIRPQTNE-AIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E-~I~~ak----~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
|++|+|||+++....+... .+..+. ..++|+|||+||+|+.... ...+...+... .. ....+++++|||+
T Consensus 391 d~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 391 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT-RI---RDRNWYVQPSCAT 466 (497)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCT-TC---CSSCEEEEECBTT
T ss_pred CEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchh-hh---hcCCeEEEEEECC
Confidence 9999999999864333322 222222 2478999999999996543 33333332211 11 1124679999999
Q ss_pred CCCChhhHHHHHHHH
Q 001915 641 KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 tGeGIdEL~eaIl~l 655 (996)
+|.||+++|++|...
T Consensus 467 ~g~gi~~l~~~l~~~ 481 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSN 481 (497)
T ss_dssp TTBTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 163
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.71 E-value=4.7e-17 Score=177.10 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch-----HHHHHHhhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-----GAMRARGAR 564 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F-----~~mr~rga~ 564 (996)
..+|+++|.+|+|||||+++|.+.... .+...++|.++....+.+ ++ .+.+.||||||++.| ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe--CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999876433 445677888876665543 33 678999999999998 566777889
Q ss_pred cCCeEEEEEecCCCCChhHHHH----HHHHHH--cCCCEEEEecccCCCCCChhH----H-HHHHHhcCCCCCCCCC-CC
Q 001915 565 VTDIAVIVVAADDGIRPQTNEA----IAHAKA--AGVPIVIAINKIDKDGANPER----V-MQELSSIGLMPEDWGG-DI 632 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt~E~----I~~ak~--~~IPIIVVINKiDL~~a~~er----v-~~eL~~~gl~~e~~gg-~i 632 (996)
.+|++|+|||+++.......+. +..+.. .++|+++|+||+|+...+... + ..++.... ..++. .+
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~---~~~g~~~~ 156 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS---SEFGFPNL 156 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---HTTTCCSC
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH---HHcCCCCe
Confidence 9999999999998765444332 223322 379999999999996421111 1 11111111 01111 37
Q ss_pred cEEEeccCCCCChhhHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~ 654 (996)
+++++||++ .|+.++|..++.
T Consensus 157 ~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 157 IGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp EEEECCTTS-SHHHHHHHHHHH
T ss_pred EEEEeeecC-ChHHHHHHHHHH
Confidence 899999999 899999888763
No 164
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=2.3e-17 Score=188.69 Aligned_cols=152 Identities=20% Similarity=0.306 Sum_probs=109.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCC--------ccchHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG--------HEAFGAMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPG--------hE~F~~mr 559 (996)
.+.++|+|+|++|+|||||+|+|.+.++. +...+|+|++... ......+..+++||||| ++.|..+.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~----~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY----SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEE----EECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEE----EEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 35689999999999999999999987765 5566778877432 23345567899999999 77888888
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEecc
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISA 639 (996)
..++..+|++|+|+|+.+++...+.+.+..+...++|+|+|+||+|+.... ....++...+ .-.++++||
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg--------~~~~~~iSA 166 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLG--------FGEPYPISG 166 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGS--------SSSEEECCT
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcC--------CCceEEeec
Confidence 889999999999999999999999999888888899999999999985321 0001111111 125689999
Q ss_pred CCCCChhhHHHHHHH
Q 001915 640 LKGEKVDDLLETIML 654 (996)
Q Consensus 640 ktGeGIdEL~eaIl~ 654 (996)
++|.|+++|++++..
T Consensus 167 ~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 167 THGLGLGDLLDAVAE 181 (456)
T ss_dssp TTCTTHHHHHHHHHT
T ss_pred ccccchHHHHHHHHh
Confidence 999999999999864
No 165
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=4.5e-17 Score=171.04 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=106.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCC-ceeeeceEEEEEeeCCccccEEEEeCCCccchH----------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG---------- 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gG-iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~---------- 556 (996)
.+.++|+|+|++|+|||||+++|++.... ....+. +|++.....+ .+ .+..+.||||||+..+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG--SW--GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEE--EE--TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEE--Ee--CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 35679999999999999999999987643 333333 5655433332 22 34679999999986642
Q ss_pred -HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc-----CCCEEEEec-ccCCCCCChhHHH---------HHHHh
Q 001915 557 -AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-----GVPIVIAIN-KIDKDGANPERVM---------QELSS 620 (996)
Q Consensus 557 -~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~-----~IPIIVVIN-KiDL~~a~~erv~---------~eL~~ 620 (996)
.....++..+|++|+|+|+++ +..+....+..+... +.|.|+++| |+|+.+....... ..+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHH
Confidence 222336688999999999986 666666666666554 567777777 9999755433321 12222
Q ss_pred cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 621 IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 621 ~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.+.....| .+ +++||++|.|+++||++|..+.
T Consensus 175 ~~~~~~~~---~~-~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 175 CGGRICAF---NN-RAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TTTCEEEC---CT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEe---cC-cccccccHHHHHHHHHHHHHHH
Confidence 22110001 12 7899999999999999997654
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=2e-16 Score=158.92 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=110.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|+|+|++|+|||||+++|.+..+.....+.++.+ +....+.+++..+.+.||||||++.|..++..++..+|++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~--~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE--FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE--EEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 34789999999999999999999877654433333322 3334445577777899999999999988888888999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCC---ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a---~~erv~~eL~~~gl~~e~~gg~ipvVeISAktG 642 (996)
++|+|+.+....... .++..+.. .+.|+++++||+|+... ..+......... .+.++++||+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~---------~~~~~d~Sal~~ 152 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---------NLSFIETSALDS 152 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---------TCEEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCeEEEEeCCCC
Confidence 999999875433222 22232322 46789999999999532 222222222222 257899999999
Q ss_pred CChhhHHHHHHHHH
Q 001915 643 EKVDDLLETIMLVA 656 (996)
Q Consensus 643 eGIdEL~eaIl~la 656 (996)
.|+++++++|....
T Consensus 153 ~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVEEAFKNILTEI 166 (199)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997654
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=1.5e-16 Score=169.32 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=109.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc------ccccCC----------------------ceee-------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAGG----------------------ITQG------------- 527 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va------~se~gG----------------------iTqd------------- 527 (996)
...++|+|+|.+|+|||||+|+|.+..+. .+..++ +|.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999987763 122222 1111
Q ss_pred ------ec--eEEEEEeeCCccccEEEEeCCCcc-------------chHHHHHHhhhcCCeEE-EEEecCCCCChhHH-
Q 001915 528 ------IG--AYKVQVPVDGKLQPCVFLDTPGHE-------------AFGAMRARGARVTDIAV-IVVAADDGIRPQTN- 584 (996)
Q Consensus 528 ------I~--a~~V~i~idgk~~~ItfIDTPGhE-------------~F~~mr~rga~~ADiVI-LVVDAsdgv~~Qt~- 584 (996)
+. ...+.+. ......++||||||+. .+..+...++..+|.+| +|+|+++++..+..
T Consensus 104 ~g~~~gi~~~~~~~~~~-~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEE-ETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEe-CCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00 0011111 1113679999999953 46677778888888776 69999988777764
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 585 EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 585 E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.++..+...+.|+|+|+||+|+...... ....+... +.... .+..+++++||++|.|+++|+++|....
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~-~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENK-LLPLR-RGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTTC-SSCCT-TCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEEEccccCCCCch-HHHHHhCC-cCcCC-CCcEEEECCChhhccccccHHHHHHHHH
Confidence 4666666678999999999999643221 12222221 11110 1235789999999999999999997643
No 168
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=175.01 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=98.3
Q ss_pred CCCCEEEEEcCC---------CCCHHHHHHHHHc---CCccccccCCc-eeeeceEEEE------------EeeCCcccc
Q 001915 489 DRPPVLTIMGHV---------DHGKTTLLDHIRK---TKVAAAEAGGI-TQGIGAYKVQ------------VPVDGKLQP 543 (996)
Q Consensus 489 ~RppkVaIVGh~---------dvGKTSLLnrL~~---s~va~se~gGi-TqdI~a~~V~------------i~idgk~~~ 543 (996)
.+.++|+|+|.+ |+|||||+++|.+ ..+.....+.+ +.+.....+. ..+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456799999999 9999999999998 33433333322 1221100000 012456678
Q ss_pred EEEEe-----------------------CCCccchHHHHHHhhh---------------------cCCeEEEEEecCCC-
Q 001915 544 CVFLD-----------------------TPGHEAFGAMRARGAR---------------------VTDIAVIVVAADDG- 578 (996)
Q Consensus 544 ItfID-----------------------TPGhE~F~~mr~rga~---------------------~ADiVILVVDAsdg- 578 (996)
+.||| ++|++.|..++..++. .+|++|||||+++.
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 5666666666666665 79999999999985
Q ss_pred -CChhHH-HHHHHH----HHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHH
Q 001915 579 -IRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 579 -v~~Qt~-E~I~~a----k~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaI 652 (996)
...... .++..+ ...++|+|+|+||+|+... ..+ .+...... .. ..++++++||++|.||+++|++|
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v-~~~~~~~~--~~--~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYI-RDAHTFAL--SK--KNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHH-HHHHHHHH--TS--SSCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHH-HHHHHHHH--hc--CCCeEEEEECCCCCCHHHHHHHH
Confidence 333221 222222 3357999999999999532 111 22221110 00 13689999999999999999999
Q ss_pred HHH
Q 001915 653 MLV 655 (996)
Q Consensus 653 l~l 655 (996)
...
T Consensus 250 ~~~ 252 (255)
T 3c5h_A 250 VQL 252 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 169
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.66 E-value=1.2e-16 Score=186.11 Aligned_cols=155 Identities=17% Similarity=0.257 Sum_probs=103.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEE--------EeeCCccccEEEEeCCCccchHHHH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQ--------VPVDGKLQPCVFLDTPGHEAFGAMR 559 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~--------i~idgk~~~ItfIDTPGhE~F~~mr 559 (996)
..+..+|+++|.+|+|||||+++|.+..+..... .|.++.+.... +..++..+.+.+|||||++.|..+.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~--~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES--QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 3456799999999999999999999877653332 24333333221 1112346789999999999999988
Q ss_pred HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc--CCCEEEEecccCCCCCC---hhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~--~IPIIVVINKiDL~~a~---~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
..+++.+|++|+|+|+++. .....++..+... ++|+|+|+||+|+.... .+.+...+... ..++
T Consensus 116 ~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~---------~~~~ 184 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI---------ENRF 184 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG---------TTCE
T ss_pred HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc---------CCce
Confidence 8889999999999999864 3444455555554 49999999999996432 22233322222 2579
Q ss_pred EEeccCCCCChhhHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~l 655 (996)
+++||++|.||++|+++|...
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp EECCC-----CTTHHHHHHHH
T ss_pred EEEecCcccCHHHHHHHHHHH
Confidence 999999999999999998754
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=1.8e-15 Score=167.82 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH---------HHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG---------AMR 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~---------~mr 559 (996)
.+.++|+++|.+|+|||||+++|.+..+.....+++|.++....+.. ....+.+|||||+..+. ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED----GYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE----TTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe----cCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 56789999999999999999999987766666677777765444332 24579999999974431 112
Q ss_pred HHhhhcCCeEEEEEecCCCC--ChhH-HHHHHHHHH-c-CCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCCCCCCCCc
Q 001915 560 ARGARVTDIAVIVVAADDGI--RPQT-NEAIAHAKA-A-GVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIP 633 (996)
Q Consensus 560 ~rga~~ADiVILVVDAsdgv--~~Qt-~E~I~~ak~-~-~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e~~gg~ip 633 (996)
...+..+|++|+|+|+++.. .... .+.+..+.. . ++|+|+|+||+|+.... .+.....+.. ..++
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---------~~~~ 311 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE---------KGLN 311 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHH---------TTCC
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHh---------cCCC
Confidence 23345799999999988743 3332 333333333 2 79999999999995421 1112222221 1367
Q ss_pred EEEeccCCCCChhhHHHHHHHHHH
Q 001915 634 MVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 634 vVeISAktGeGIdEL~eaIl~lae 657 (996)
+++|||++|+||++|+++|.....
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999986543
No 171
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=5.1e-16 Score=165.60 Aligned_cols=154 Identities=20% Similarity=0.270 Sum_probs=93.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccC------CceeeeceEEEEEeeCCccccEEEEeCCCc-------cchHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG------GITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFGA 557 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~g------GiTqdI~a~~V~i~idgk~~~ItfIDTPGh-------E~F~~ 557 (996)
.++|+++|++|+|||||+|+|..........+ ..|.++..+...+..++....++||||||+ +.|..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 36899999999999999999987665543321 344455555555555555568999999997 23443
Q ss_pred HH-------HHhhh-------------cCCeEEEEEecCC-CCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhH--
Q 001915 558 MR-------ARGAR-------------VTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PER-- 613 (996)
Q Consensus 558 mr-------~rga~-------------~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~er-- 613 (996)
+. ..++. .+|+++++++... ++.+.+.+.++.+.. ++|+|+|+||+|+.... ...
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 33 33333 2789999986654 788888888888876 89999999999985321 111
Q ss_pred --HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 614 --VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 614 --v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
+...+... .++++++||++++|+++++++|..
T Consensus 167 ~~i~~~l~~~---------~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 167 KQIMKEIQEH---------KIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHT---------TCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHc---------CCeEEcCCCCCChhHHHHHHHHhc
Confidence 22222222 356888999999999999998853
No 172
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.64 E-value=3.1e-16 Score=165.47 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=104.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcccccc--CCceeeeceEEEEEeeCCccccEEEEeCCCc--------cchHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--GGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------EAFGAM 558 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~--gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh--------E~F~~m 558 (996)
....+|+++|++|+|||||+|+|++..+..... .++|.+.....+. + .+..++||||||. +.|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~--~--~~~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR--W--DKCHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE--E--TTEEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE--E--CCcEEEEEECCCCCCCCCCcHHHHHHH
Confidence 356799999999999999999999877654332 2466554333332 2 3467999999996 555554
Q ss_pred HHHhh----hcCCeEEEEEecCCCCChhHHHHHHHHHHc------CCCEEEEecccCCCCCChhHHHHH-----HHhcCC
Q 001915 559 RARGA----RVTDIAVIVVAADDGIRPQTNEAIAHAKAA------GVPIVIAINKIDKDGANPERVMQE-----LSSIGL 623 (996)
Q Consensus 559 r~rga----~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~------~IPIIVVINKiDL~~a~~erv~~e-----L~~~gl 623 (996)
..+++ ..+|++|+|+|+++ +...+...+..+... +.|+|+++||+|+.+.+.+..... +...
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l-- 171 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL-- 171 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH--
T ss_pred HHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH--
Confidence 44444 89999999999985 666666666666553 789999999999976554433321 1111
Q ss_pred CCCCCCCCCcEEEeccCC-----CCChhhHHHHHHHHHH
Q 001915 624 MPEDWGGDIPMVQISALK-----GEKVDDLLETIMLVAE 657 (996)
Q Consensus 624 ~~e~~gg~ipvVeISAkt-----GeGIdEL~eaIl~lae 657 (996)
.+.+++ .++.+++.. +.|+++|++.|..+..
T Consensus 172 -~~~~g~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 172 -VAECGG--RVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp -HHHTTT--CEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHcCC--eEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 111222 355555443 6899999999876543
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=3.1e-15 Score=151.53 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=80.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccc-cCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhc-
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV- 565 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se-~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~- 565 (996)
..+.++|+|+|++|+|||||+++|.+..+.... ....|... +.....+.||||||++.|..++..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 346789999999999999999999987653210 01112111 1245689999999999999888888876
Q ss_pred ---CCeEEEEEecC-CCCC-hhHHHHHHHH-H------HcCCCEEEEecccCCCCCC
Q 001915 566 ---TDIAVIVVAAD-DGIR-PQTNEAIAHA-K------AAGVPIVIAINKIDKDGAN 610 (996)
Q Consensus 566 ---ADiVILVVDAs-dgv~-~Qt~E~I~~a-k------~~~IPIIVVINKiDL~~a~ 610 (996)
+|++|+|+|++ +... ....+.+..+ . ..++|+++|+||+|+....
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 89999999998 3222 2222222222 1 1479999999999996543
No 174
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=4.4e-16 Score=173.04 Aligned_cols=155 Identities=23% Similarity=0.205 Sum_probs=108.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhh
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga 563 (996)
-+.|+|+|.+|+|||||+++|.+.+......+.+|.+.....+.+ ++ ...+.||||||+.. +.....+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~--~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVET--DD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEEC--SS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEe--CC-CceEEEecCCCCcccccccchhHHHHHHHH
Confidence 457999999999999999999987766666777887776655443 22 35799999999532 333444556
Q ss_pred hcCCeEEEEEecCC---CCChhH-HHHHHHHHH-----cCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcE
Q 001915 564 RVTDIAVIVVAADD---GIRPQT-NEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 564 ~~ADiVILVVDAsd---gv~~Qt-~E~I~~ak~-----~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipv 634 (996)
..+|++|+|||+++ ...... ..++..+.. .++|+|+|+||+|+... .....++... + ....++
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~-l-----~~~~~v 306 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEK-L-----TDDYPV 306 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHH-C-----CSCCCB
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHH-h-----hcCCCE
Confidence 67999999999986 222222 233344443 37899999999999642 2222333221 1 111579
Q ss_pred EEeccCCCCChhhHHHHHHHHH
Q 001915 635 VQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 635 VeISAktGeGIdEL~eaIl~la 656 (996)
++|||++++||++|+++|....
T Consensus 307 ~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 307 FPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp CCCSSCCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999997553
No 175
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.62 E-value=2e-15 Score=167.21 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc-cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH---HHHHhhhcCCe
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---MRARGARVTDI 568 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s~va~-se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~---mr~rga~~ADi 568 (996)
+|+++|..++|||||++++.+..... ....+.|.++.+..+ + ..++++|||||||+.|.. ++..+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v----~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF----S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE----C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE----c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 58999999999999999887553321 112345666555432 2 347899999999999963 57889999999
Q ss_pred EEEEEecCCCCChhHHHH----HHHHH--HcCCCEEEEecccCCCCCCh----hHHHHHHHhcCCCCCCC-CCCCcEEEe
Q 001915 569 AVIVVAADDGIRPQTNEA----IAHAK--AAGVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDW-GGDIPMVQI 637 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~----I~~ak--~~~IPIIVVINKiDL~~a~~----erv~~eL~~~gl~~e~~-gg~ipvVeI 637 (996)
+|+|||+++. .....+. +..+. ..++|+++++||+|+...+. .+...+-....+....+ +..++|+++
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3333322 33332 24789999999999964322 12222211222222211 125789999
Q ss_pred ccCCCCChhhHHHHHH
Q 001915 638 SALKGEKVDDLLETIM 653 (996)
Q Consensus 638 SAktGeGIdEL~eaIl 653 (996)
||++ .||.+.|..|.
T Consensus 155 SAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIV 169 (331)
T ss_dssp CSSS-SHHHHHHHHHH
T ss_pred ccCC-CcHHHHHHHHH
Confidence 9998 58999998886
No 176
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=6.1e-15 Score=165.05 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=100.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc---------cchHHHHHHh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAMRARG 562 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh---------E~F~~mr~rg 562 (996)
++|+|+|.+|+|||||+|+|.+..+......++|.+.....+.+ ++ ..+.+|||||+ +.|...+ ..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~--~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI--NN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE--TT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE--CC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 45999999999999999999988776667778888776555543 44 57899999996 3454443 35
Q ss_pred hhcCCeEEEEEecCCCC--Chh-HHHHHHHHHH---cCCCEEEEecccCCCCCChhHHHHHH----HhcCCCCCCCCCCC
Q 001915 563 ARVTDIAVIVVAADDGI--RPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGANPERVMQEL----SSIGLMPEDWGGDI 632 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv--~~Q-t~E~I~~ak~---~~IPIIVVINKiDL~~a~~erv~~eL----~~~gl~~e~~gg~i 632 (996)
+..+|++++|+|+++.. ... .......+.. .++|+|+|+||+|+...........+ .... ....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~------~~~~ 328 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY------SPIF 328 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC------SCEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc------CCCC
Confidence 78999999999998764 222 1112223332 47899999999999654322211221 1210 1124
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lae 657 (996)
+++++||++|.|+++|+++|.....
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhc
Confidence 6899999999999999999976543
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.60 E-value=4.7e-15 Score=148.79 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeE
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiV 569 (996)
..++|+|+|++|+|||||+++|.+..+.....+.++.+ +....+.+++..+.+.+|||||++.|..++..++..+|++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~--~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE--FATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34789999999999999999999877654444433333 3334445567667788999999999888888888999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEecccCCCCCC--hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCC
Q 001915 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (996)
Q Consensus 570 ILVVDAsdgv~~Qt~-E~I~~ak~---~~IPIIVVINKiDL~~a~--~erv~~eL~~~gl~~e~~gg~ipvVeISAktGe 643 (996)
++|+|..+....+.. .++..+.. .+.|+++++||+|+.+.. .......+... ..+.++++||+++.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~--------~~~~~ld~Sald~~ 177 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK--------NGLSFIETSALDST 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH--------TTCEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH--------cCCEEEEEeCCCCC
Confidence 999999874332222 22222222 367899999999985321 11222222221 13578999999999
Q ss_pred ChhhHHHHHHH
Q 001915 644 KVDDLLETIML 654 (996)
Q Consensus 644 GIdEL~eaIl~ 654 (996)
|++++++.|..
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=3.4e-15 Score=160.57 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=100.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeec---e-----------------------------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG---A----------------------------------- 530 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~---a----------------------------------- 530 (996)
...|.|+|+|++|+|||||+|+|.+..+.....+.+|...+ .
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999987652111111111110 0
Q ss_pred -------------------EEEEEeeCCccccEEEEeCCCccc-------------hHHHHHHhhhcCCeEEEEEec-CC
Q 001915 531 -------------------YKVQVPVDGKLQPCVFLDTPGHEA-------------FGAMRARGARVTDIAVIVVAA-DD 577 (996)
Q Consensus 531 -------------------~~V~i~idgk~~~ItfIDTPGhE~-------------F~~mr~rga~~ADiVILVVDA-sd 577 (996)
..+.+ +......++||||||+.. |..+...++..+|++|||+|+ +.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKI-YSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEE-EETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEE-ecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 00111 112345799999999643 566677788999999999997 55
Q ss_pred CCChhH-HHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCC-CCCCcEEEeccCC---CCChhhHHHHH
Q 001915 578 GIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDW-GGDIPMVQISALK---GEKVDDLLETI 652 (996)
Q Consensus 578 gv~~Qt-~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~-gg~ipvVeISAkt---GeGIdEL~eaI 652 (996)
+...+. ...+..+...+.|+|+|+||+|+..... .....+... +. .+ .+.++++.+||.+ +.|++++++.+
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~-~~--~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-DAMEVLTGR-VI--PLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-CCHHHHTTS-SS--CCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-HHHHHHhCC-Cc--cCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 555444 4666777667899999999999964332 122233221 11 11 1112344445555 78888998887
Q ss_pred HHH
Q 001915 653 MLV 655 (996)
Q Consensus 653 l~l 655 (996)
...
T Consensus 257 ~~~ 259 (315)
T 1jwy_B 257 ILY 259 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 179
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=150.08 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=97.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccC--CceeeeceEEEEEeeCCccccEEEEeCCCc-----------cch
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG--GITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----------EAF 555 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~g--GiTqdI~a~~V~i~idgk~~~ItfIDTPGh-----------E~F 555 (996)
.+.++|+|+|++|+|||||+++|++..+.....+ ++|.+...+.+ .++ +..++||||||. +.|
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~--~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS--SWK--ETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEE--EET--TEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEE--EeC--CceEEEEECCCccCCCCCHHHHHHHH
Confidence 3567999999999999999999998877554444 55655433333 233 357999999994 345
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEecccCCCCCC-hh--------HHHHHHHhc
Q 001915 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGAN-PE--------RVMQELSSI 621 (996)
Q Consensus 556 ~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak-----~~~IPIIVVINKiDL~~a~-~e--------rv~~eL~~~ 621 (996)
......++..+|++|+|+|+++ ......+.+..+. ....|+|+|+||+|+.... .+ .+...+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 5555566678899999999975 3334444443332 2356999999999985422 11 122222222
Q ss_pred CCCCCCCCCCCcEEEeccCCC-----CChhhHHHHHHHHH
Q 001915 622 GLMPEDWGGDIPMVQISALKG-----EKVDDLLETIMLVA 656 (996)
Q Consensus 622 gl~~e~~gg~ipvVeISAktG-----eGIdEL~eaIl~la 656 (996)
+ ..++.+++..+ .++.+||+.|..+.
T Consensus 182 ~---------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 182 G---------DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp S---------SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 2 24666666543 68888998876543
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=1.2e-14 Score=146.15 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=101.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc--ccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc----------chH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA--AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----------AFG 556 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va--~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE----------~F~ 556 (996)
.+..+|+|+|++|+|||||+++|.+..+. .....|+|...+.+. +++ .+.+|||||+. .|.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VAD---GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EET---TEEEEECCCCC------CCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecC---CEEEEECcCCcccccCHHHHHHHH
Confidence 35678999999999999999999876522 233345554432222 222 58999999974 233
Q ss_pred HHHHHhh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCC
Q 001915 557 AMRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDI 632 (996)
Q Consensus 557 ~mr~rga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~i 632 (996)
.....++ ..+|.+++|+|+.++......+....+...++|+++++||+|+..... .+....+...- ..+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~---~~~~~~~ 173 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV---LAFNGDV 173 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---GGGCSCE
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---HhcCCCC
Confidence 3333444 478999999999988776655566666778999999999999854211 11111111110 0111235
Q ss_pred cEEEeccCCCCChhhHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~l 655 (996)
.++++||+++.|+++++++|..+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHH
Confidence 78999999999999999998754
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.52 E-value=5.3e-14 Score=169.39 Aligned_cols=170 Identities=15% Similarity=0.204 Sum_probs=109.9
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCCccc-cccCCc--------------eeee----------------------
Q 001915 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGI--------------TQGI---------------------- 528 (996)
Q Consensus 486 ~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~-se~gGi--------------TqdI---------------------- 528 (996)
.+..++++|+|+|++|+|||||+|+|++..+.. +..+++ |.+.
T Consensus 64 ~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 64 NLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp HHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred HhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCH
Confidence 345678899999999999999999999877543 333333 2111
Q ss_pred ---------------ceEEEEEeeCCcc--ccEEEEeCCCccc---hHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHH
Q 001915 529 ---------------GAYKVQVPVDGKL--QPCVFLDTPGHEA---FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIA 588 (996)
Q Consensus 529 ---------------~a~~V~i~idgk~--~~ItfIDTPGhE~---F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~ 588 (996)
....+.+.+.... ..++||||||+.. +......++..+|++|+|+|++++......+.+.
T Consensus 144 ~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred HHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 0001111111110 4699999999654 3455557789999999999999988877776664
Q ss_pred -HHHHcCCCEEEEecccCCCCCC---hh----------HHHHHHHh-c-CCCC-CCC-CCCCcEEEeccC----------
Q 001915 589 -HAKAAGVPIVIAINKIDKDGAN---PE----------RVMQELSS-I-GLMP-EDW-GGDIPMVQISAL---------- 640 (996)
Q Consensus 589 -~ak~~~IPIIVVINKiDL~~a~---~e----------rv~~eL~~-~-gl~~-e~~-gg~ipvVeISAk---------- 640 (996)
.+...+.|+++|+||+|+.... .+ .+...+.. . .+.. ..+ ....++++|||+
T Consensus 224 ~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 224 NYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp HHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred HHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 4455688999999999985321 11 12211111 0 0000 000 113579999999
Q ss_pred ----CCCChhhHHHHHHHH
Q 001915 641 ----KGEKVDDLLETIMLV 655 (996)
Q Consensus 641 ----tGeGIdEL~eaIl~l 655 (996)
+|.|+++|++.|...
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHH
Confidence 999999999988653
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.51 E-value=1.1e-14 Score=161.22 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc------cccCCceeeec---------------------------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA------AEAGGITQGIG--------------------------------- 529 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~------se~gGiTqdI~--------------------------------- 529 (996)
...++|+|+|.+|+|||||+|+|.+..+.. +..++.++-+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999999876631 22222111000
Q ss_pred ------e----EEEEEeeCCccccEEEEeCCCcc-------------chHHHHHHhhhcC-CeEEEEEecCCCCChhHH-
Q 001915 530 ------A----YKVQVPVDGKLQPCVFLDTPGHE-------------AFGAMRARGARVT-DIAVIVVAADDGIRPQTN- 584 (996)
Q Consensus 530 ------a----~~V~i~idgk~~~ItfIDTPGhE-------------~F~~mr~rga~~A-DiVILVVDAsdgv~~Qt~- 584 (996)
+ ..+.+. ......++||||||.. .+..+...++..+ +++++|+|++..+..+..
T Consensus 109 ~g~~~gi~~~~~~~~i~-~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVY-SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEE-ETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred cccCCCcccCceEEEEe-cCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 0 011111 1123679999999952 4666777777555 566667788776666654
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 585 EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 585 E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
+.++.+...+.|+|+|+||+|+.+...+ ....+....+ ... .+..+++++||++|.|+++|++++..
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~-~l~-~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLL-PLR-RGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSS-CCT-TCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcc-ccc-CCceEEEeCCcccccccccHHHHHHH
Confidence 3666666678999999999999643221 1222222111 111 12356889999999999999999875
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.5e-14 Score=140.55 Aligned_cols=118 Identities=22% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccc---cccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~---se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ 565 (996)
.+.++|+|+|++|+|||||+++|.+..+.. ...++++. +.....+.||||||++.|...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----------DYDGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------CCCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----------eecCCeEEEEECCCCchHHHHHHHHHHh
Confidence 567899999999999999999999876532 11111221 1245679999999999887776666654
Q ss_pred ----CCeEEEEEecC-CCCCh-hHHHHHHHH----H---HcCCCEEEEecccCCCCC-ChhHHHHH
Q 001915 566 ----TDIAVIVVAAD-DGIRP-QTNEAIAHA----K---AAGVPIVIAINKIDKDGA-NPERVMQE 617 (996)
Q Consensus 566 ----ADiVILVVDAs-dgv~~-Qt~E~I~~a----k---~~~IPIIVVINKiDL~~a-~~erv~~e 617 (996)
+|++|+|||++ +.... .....+..+ . ..++|+++|+||+|+... ..+.+...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 89999999998 32111 111122111 1 137999999999999643 33334333
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.46 E-value=1.6e-13 Score=145.37 Aligned_cols=115 Identities=11% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhh----
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGA---- 563 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga---- 563 (996)
.+.++|+++|++|+|||||+++|++..+. .....++|.+...+.+ .+ .+..++||||||++.|..+...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR--TM--GGFTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEE--EE--TTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEE--EE--CCeeEEEEECCCCCCcccchHHHHHHHH
Confidence 35689999999999999999999987763 4455566655433333 23 345899999999987743322222
Q ss_pred -----hcCCeEEEEEecCC-CCChhHHHHHHHHHHc-----CCCEEEEecccCCC
Q 001915 564 -----RVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-----GVPIVIAINKIDKD 607 (996)
Q Consensus 564 -----~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~-----~IPIIVVINKiDL~ 607 (996)
..+|++|+|+|++. .........+..+... ..|+|+|+||+|+.
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 37899999999876 3443444555554432 24899999999984
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.44 E-value=3.8e-13 Score=148.98 Aligned_cols=159 Identities=13% Similarity=0.203 Sum_probs=103.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeece-------------------------------------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGA------------------------------------- 530 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a------------------------------------- 530 (996)
...-|.|+|+|++|+|||||+++|.+..+.....+.+|+....
T Consensus 31 ~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 31 WDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp -CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 3456799999999999999999999876532222222211000
Q ss_pred ---------------EEEEEeeCCccccEEEEeCCCccch-------------HHHHHHhhhcCCeEEEEEecCC-C-CC
Q 001915 531 ---------------YKVQVPVDGKLQPCVFLDTPGHEAF-------------GAMRARGARVTDIAVIVVAADD-G-IR 580 (996)
Q Consensus 531 ---------------~~V~i~idgk~~~ItfIDTPGhE~F-------------~~mr~rga~~ADiVILVVDAsd-g-v~ 580 (996)
..+.+. ......++||||||...+ ..+...++..+|++|||+|+.+ . ..
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HHHhcCCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence 011111 122457999999997776 6667788899999999998753 2 22
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHH
Q 001915 581 PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 581 ~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl 653 (996)
..+...+..+...+.|+|+|+||+|+...... ....+.... .....+|+++|++++.++++.+..+.
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHH
Confidence 33455555555567899999999999643221 122222211 11236799999999999998776654
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=155.41 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccc-ccc------CCceeeeceEEEEEeeCCccccEEEEeCCCc-------cch
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEA------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAF 555 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~-se~------gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh-------E~F 555 (996)
..++|+|+|++|+|||||+++|....... ... ...|..+....+.+...+....+++|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 44679999999999999999987554322 111 1234444333333333444567999999998 555
Q ss_pred HHHHH-------Hhhhc-------------CCeEEEEEec-CCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHH
Q 001915 556 GAMRA-------RGARV-------------TDIAVIVVAA-DDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (996)
Q Consensus 556 ~~mr~-------rga~~-------------ADiVILVVDA-sdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv 614 (996)
..+.. .++.. .|+++|+++. .+++.....+.+..+. .++|+|+|+||+|+.. ...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~--~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT--LKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSC--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCC--HHHH
Confidence 54443 44432 2457777765 4566666666665553 5799999999999954 2222
Q ss_pred H---HHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 615 M---QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 615 ~---~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
. ..+...- ..+ .++++++||++|.| ++.|.++..
T Consensus 193 ~~~k~~i~~~~---~~~--~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 193 ERLKKRILDEI---EEH--NIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHHHHHT---TCC---CCSCCCC----------CHHHHH
T ss_pred HHHHHHHHHHH---HHC--CCCEEeCCCcCCCc-chhHHHHHH
Confidence 1 2222211 111 36899999999999 777777654
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=1.2e-13 Score=156.32 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=48.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEe-------------------eCC-ccccEEEEeCCC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VDG-KLQPCVFLDTPG 551 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~-------------------idg-k~~~ItfIDTPG 551 (996)
.+|+|+|++|+|||||+|+|++.....+..+++|++.......+. +++ ....+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999887556677778877655433221 121 135799999999
Q ss_pred ccch----HHHHH---HhhhcCCeEEEEEecCCC
Q 001915 552 HEAF----GAMRA---RGARVTDIAVIVVAADDG 578 (996)
Q Consensus 552 hE~F----~~mr~---rga~~ADiVILVVDAsdg 578 (996)
+..+ ..+.. .+++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 345889999999999875
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.41 E-value=1.2e-13 Score=140.52 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC-----cc-ccccCCceeee------ceEEEEEee----------------CCcc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-----VA-AAEAGGITQGI------GAYKVQVPV----------------DGKL 541 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~-----va-~se~gGiTqdI------~a~~V~i~i----------------dgk~ 541 (996)
+.++|+|+|++|+|||||+++|.... +. .....+.+.+. +...+.+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 56799999999999999999998542 11 11111111100 111111111 1134
Q ss_pred ccEEEEeCCCccchHHHHHHhh-hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC---CChhHHHHH
Q 001915 542 QPCVFLDTPGHEAFGAMRARGA-RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQE 617 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga-~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~---a~~erv~~e 617 (996)
..+.||||+|+-.. ..++ ...+.+++|+|+.++...++ .+....+.|+++++||+|+.. .+.+++...
T Consensus 109 ~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 180 (221)
T 2wsm_A 109 CDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAEAVGADVEKMKAD 180 (221)
T ss_dssp CSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHH
T ss_pred CCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCcchhhHHHHHHHH
Confidence 57999999995110 1111 35688999999988653322 222334689999999999843 245555555
Q ss_pred HHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 618 LSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 618 L~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+...+ ...+++++||++|.|+++|+++|...
T Consensus 181 ~~~~~-------~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 181 AKLIN-------PRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HHHHC-------TTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhC-------CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 55432 23689999999999999999999754
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.38 E-value=2e-12 Score=137.47 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHH-------HHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-------MRA 560 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~-------mr~ 560 (996)
.+.++|+++|++|+|||||+|+|++..+. .....++|.+...+. + ...+..++||||||+..|.. ...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~ 112 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS--R--SRAGFTLNIIDTPGLIEGGYINDMALNIIK 112 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE--E--EETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE--E--eeCCeEEEEEECCCCCCCccchHHHHHHHH
Confidence 35679999999999999999999987753 344555665432222 2 23456899999999876541 112
Q ss_pred Hh--hhcCCeEEEEEecCC-CCChhHHHHHHHHHHc-C----CCEEEEecccCCCC
Q 001915 561 RG--ARVTDIAVIVVAADD-GIRPQTNEAIAHAKAA-G----VPIVIAINKIDKDG 608 (996)
Q Consensus 561 rg--a~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~-~----IPIIVVINKiDL~~ 608 (996)
++ ...+|++|||+|++. .+.....+.+..+... + +|+|+|+||+|+..
T Consensus 113 ~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 113 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 22 247999999999875 4444455566555432 3 69999999999853
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.37 E-value=4.7e-13 Score=148.55 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------Ccccc-ccCCcee-----------------eeceEEEEEe-------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAAA-EAGGITQ-----------------GIGAYKVQVP------- 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~va~s-e~gGiTq-----------------dI~a~~V~i~------- 536 (996)
..+.++|+|+|++|+|||||+++|... ++..- -.++.+. +.+.+.....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 356789999999999999999998632 11100 0000000 0011111100
Q ss_pred -----------eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 537 -----------idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
++..++.+.||||||... .....+..+|++|+|+|+..+...+... ....++|+++|+||+|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~D 228 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKAD 228 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCC
Confidence 011356899999999432 2223358999999999987654333221 0113469999999999
Q ss_pred CCCC-ChhHHHHHHHh----cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 606 KDGA-NPERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 606 L~~a-~~erv~~eL~~----~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
+... .......++.. .......| ..+++++||++|.||++|+++|....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALW--RPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSC--CCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCC--CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 8532 11222222322 22111122 47899999999999999999997654
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=4.5e-12 Score=144.50 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRAR 561 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~r 561 (996)
.....|+|+|++|+|||||+++|.+........+.+|.+.....+.. ++ ...++++||||+.. +.....+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~--~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV--SE-EERFTLADIPGIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC--SS-SCEEEEEECCCCCCCGGGSCCSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe--cC-cceEEEEeccccccchhhhhhhhHHHHH
Confidence 34567999999999999999999877655455555665544433332 22 35799999999632 2222334
Q ss_pred hhhcCCeEEEEEecCCCCChhH----HHHHHHHH-HcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEE
Q 001915 562 GARVTDIAVIVVAADDGIRPQT----NEAIAHAK-AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt----~E~I~~ak-~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVe 636 (996)
.+..+|.+++|+|+++....+. .+...++. ....|.|+++||+|+... .....+...- . . ...++++
T Consensus 232 ~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l-~--~--~g~~vi~ 303 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADAL-A--R--EGLAVLP 303 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHH-H--T--TTSCEEE
T ss_pred HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHH-H--h--cCCeEEE
Confidence 4578999999999971111111 11111111 136899999999999643 2222222110 0 0 1257999
Q ss_pred eccCCCCChhhHHHHHHHHH
Q 001915 637 ISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 637 ISAktGeGIdEL~eaIl~la 656 (996)
+||++++||++|+++|..+.
T Consensus 304 iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 304 VSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHHHH
Confidence 99999999999999997654
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.33 E-value=4.6e-12 Score=153.61 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=108.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeee-----------------------------------------
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGI----------------------------------------- 528 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI----------------------------------------- 528 (996)
..|.|+|+|.+++|||||+|+|.+..+.....+.+|+-.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 568999999999999999999998765322222222110
Q ss_pred ------c--eEEEEEeeCCccccEEEEeCCCcc-------------chHHHHHHhh-hcCCeEEEEEecCCCCChhHH-H
Q 001915 529 ------G--AYKVQVPVDGKLQPCVFLDTPGHE-------------AFGAMRARGA-RVTDIAVIVVAADDGIRPQTN-E 585 (996)
Q Consensus 529 ------~--a~~V~i~idgk~~~ItfIDTPGhE-------------~F~~mr~rga-~~ADiVILVVDAsdgv~~Qt~-E 585 (996)
. ...+.+.. .....++|+||||.- .+..+...++ ..+|++++|+|++++...++. .
T Consensus 130 g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 01111111 123468999999932 3445555666 678999999999998887776 6
Q ss_pred HHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 586 AIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 586 ~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
.+..+...+.|+|+|+||+|+....... .. +....+.... .+..+++++||++|.|+++|+++|...
T Consensus 209 ll~~L~~~g~pvIlVlNKiDlv~~~~~~-~~-il~~~~~~l~-lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDPQGQRTIGVITKLDLMDEGTDA-RD-VLENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCTTCSSEEEEEECTTSSCTTCCS-HH-HHTTCSSCCS-SCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEeCcccCCcchhh-HH-HHHHHhhhhh-ccCCceEEecccccccchhHHHHHHHH
Confidence 7777877889999999999996432211 11 1111111111 123578899999999999999998753
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.33 E-value=9.4e-13 Score=146.28 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=63.3
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHH
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQEL 618 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL 618 (996)
.++.+.|+||||.... .......+|++++|+|+.++...+.. .. .....|.++|+||+|+.... .......+
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~~~~~~~~~~~l 237 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDLIVPARRIQAEY 237 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCCchhHHHHHHHH
Confidence 3467999999995311 12235789999999999875432221 11 12467889999999985311 11122222
Q ss_pred Hh-cCC-CCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 619 SS-IGL-MPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 619 ~~-~gl-~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.. ... ......+..+++++||++|.|+++|+++|....
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 21 111 110001236799999999999999999997653
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.32 E-value=2e-12 Score=142.94 Aligned_cols=160 Identities=23% Similarity=0.221 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC------Ccc-ccccCCceee-----------------eceEEEEEe-------
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVA-AAEAGGITQG-----------------IGAYKVQVP------- 536 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s------~va-~se~gGiTqd-----------------I~a~~V~i~------- 536 (996)
..+..+|+|+|++|+|||||++.|... ++. ....++.|.. ...+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 356789999999999999999999632 211 1111111110 000100000
Q ss_pred -----------eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 537 -----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 537 -----------idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
+...++.+.||||||+..+... ....+|++|+|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0123568999999997665433 3589999999999976543222111 112578999999999
Q ss_pred CCCC-ChhHHHHHHHh----cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 606 KDGA-NPERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 606 L~~a-~~erv~~eL~~----~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
+... +......++.. .......| ..+++++||++|.|+++|+++|....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9642 12222223322 11111122 25789999999999999999997654
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.31 E-value=6.8e-12 Score=147.46 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCcc---ccccCCceeeeceEE----------------------E----------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYK----------------------V---------- 533 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va---~se~gGiTqdI~a~~----------------------V---------- 533 (996)
...++|+|+|++|+|||||+|+|++..+. .+..+++++...... +
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988763 344444432111100 0
Q ss_pred --EEeeCCc-cccEEEEeCCCccc-----------hHHHHHHhhhcCCeEEEEEecCC-CCChhHHHHHHHHHHcCCCEE
Q 001915 534 --QVPVDGK-LQPCVFLDTPGHEA-----------FGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIV 598 (996)
Q Consensus 534 --~i~idgk-~~~ItfIDTPGhE~-----------F~~mr~rga~~ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IPII 598 (996)
...+.+. ...++||||||+.. |......++..+|++|+|+|+++ +...++.+++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 0000000 03699999999865 66777788899999999999988 577888888888877788999
Q ss_pred EEecccCCCC
Q 001915 599 IAINKIDKDG 608 (996)
Q Consensus 599 VVINKiDL~~ 608 (996)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999853
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.28 E-value=3.7e-11 Score=125.37 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=71.4
Q ss_pred ccEEEEeCCCccchHHHH------HHhhhcCCeEEEEEecCCCCChhHHHH-----HHHHHHcCCCEEEEecccCCCCCC
Q 001915 542 QPCVFLDTPGHEAFGAMR------ARGARVTDIAVIVVAADDGIRPQTNEA-----IAHAKAAGVPIVIAINKIDKDGAN 610 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr------~rga~~ADiVILVVDAsdgv~~Qt~E~-----I~~ak~~~IPIIVVINKiDL~~a~ 610 (996)
+.+.||||||+..+.... ...+.. +++|+++|+........... .......++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 579999999987654332 234455 89999999876555444321 122234579999999999985421
Q ss_pred -hhHHHHHHHhcC-----C----------------CCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 611 -PERVMQELSSIG-----L----------------MPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 611 -~erv~~eL~~~g-----l----------------~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
.+.+...+.... + ....++...+++++||++|.|+++|+++|....
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 111111111000 0 001122335799999999999999999997654
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.23 E-value=1e-11 Score=135.16 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC-CccccccC------CceeeeceEEEEEeeCCccccEEEEeCCCc-------cchH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT-KVAAAEAG------GITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFG 556 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s-~va~se~g------GiTqdI~a~~V~i~idgk~~~ItfIDTPGh-------E~F~ 556 (996)
.++|+|+|+.|+|||||+++|.+. .+...... ..|.......+.....+....+++|||+|. +.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 467899999999999999998765 32221110 112222211222222334467999999997 5554
Q ss_pred HHHH-------Hhhhc-------------CCeEEEEEecCC-CCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh----
Q 001915 557 AMRA-------RGARV-------------TDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---- 611 (996)
Q Consensus 557 ~mr~-------rga~~-------------ADiVILVVDAsd-gv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~---- 611 (996)
.+.. .++.. +++++|+++.+. ++.+...+.++.+. .++|+++|+||+|+.....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~ 176 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 176 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHH
Confidence 4433 33322 344566665443 57777766666554 3679999999999854211
Q ss_pred -hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 612 -ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 612 -erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
+++.+.+..+ .++++++||++| |++++|+.+...
T Consensus 177 ~~~~~~~~~~~---------~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 177 KKRILDEIEEH---------NIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHHHHHHT---------TCCCCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHc---------CCeEEecCCccc-cccHHHHHHHHH
Confidence 1122222222 257899999999 999999988643
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.20 E-value=6.6e-11 Score=133.36 Aligned_cols=110 Identities=24% Similarity=0.236 Sum_probs=80.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hHHHHHHhhh
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~~mr~rga~ 564 (996)
..|+|+|.||+|||||+|+|.+....+...+++|++.....+.+ .+.+++|+||||.-. ........++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~----~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY----KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE----TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe----CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 48999999999999999999998888888999999876555443 346799999999421 2223345568
Q ss_pred cCCeEEEEEecCCCCChhHHHHH-HHHHH-----cCCCEEEEecccCCC
Q 001915 565 VTDIAVIVVAADDGIRPQTNEAI-AHAKA-----AGVPIVIAINKIDKD 607 (996)
Q Consensus 565 ~ADiVILVVDAsdgv~~Qt~E~I-~~ak~-----~~IPIIVVINKiDL~ 607 (996)
.||++++|+|+++++.. .+.+ ..+.. ...|.++++||+|..
T Consensus 149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999999874322 2222 22222 246888999999973
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.20 E-value=5.9e-11 Score=120.95 Aligned_cols=153 Identities=21% Similarity=0.216 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeec------------eEEEEEeeC------------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIG------------AYKVQVPVD------------------ 538 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~------------a~~V~i~id------------------ 538 (996)
.+.++|+|+|++|+|||||+++|....+.....+.+..+.+ ...+.+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999865332111111111111 111221100
Q ss_pred CccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC---CChhHHH
Q 001915 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVM 615 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~---a~~erv~ 615 (996)
.....+.++||+|.-.. ....-...+..++++|+.++...... .....+.|.++|+||+|+.. ...+.+.
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHHHHHHH
Confidence 01226888888883111 01111345667788886543222111 11124689999999999853 2344444
Q ss_pred HHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 616 ~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+...+ ...+++++||++|.|+++||++|...
T Consensus 189 ~~~~~~~-------~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 189 NDAKRIN-------PDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHC-------TTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhC-------CCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 4444322 23689999999999999999998754
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=8.2e-11 Score=132.04 Aligned_cols=84 Identities=24% Similarity=0.132 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc---------------cccEEEEeCCCccchH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPGHEAFG 556 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk---------------~~~ItfIDTPGhE~F~ 556 (996)
.+|+|+|.+|+|||||+|+|.+........+++|++.....+.+ .+. ...++||||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~--~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM--PDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC--CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec--CCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999988766667777887766544443 221 1469999999987764
Q ss_pred HH-------HHHhhhcCCeEEEEEecCC
Q 001915 557 AM-------RARGARVTDIAVIVVAADD 577 (996)
Q Consensus 557 ~m-------r~rga~~ADiVILVVDAsd 577 (996)
.. ...+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335689999999999986
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.08 E-value=6.6e-11 Score=132.95 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEee------------C-----CccccEEEEeCCCccc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV------------D-----GKLQPCVFLDTPGHEA 554 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~i------------d-----gk~~~ItfIDTPGhE~ 554 (996)
++|+|+|.+|+|||||+++|.+........+++|.+.+...+.++- . .....+.||||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 4689999999999999999997654445556666655544443210 0 0234699999999765
Q ss_pred h-------HHHHHHhhhcCCeEEEEEecCC
Q 001915 555 F-------GAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 555 F-------~~mr~rga~~ADiVILVVDAsd 577 (996)
+ .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4 3334456799999999999986
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=1.9e-10 Score=131.29 Aligned_cols=153 Identities=21% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCCccccccCCc------eeeeceEEEEEeeCCccccEEEEeCCCccchH-------H
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGI------TQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-------A 557 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGi------TqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~-------~ 557 (996)
.+.|+|+|++|+|||||++.|.+..+.....+++ |.......+.+...+....+++|||+|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 3578999999999999999999766532112211 21111111111112233468999999976542 1
Q ss_pred HH-------HH-----------hhhc--CCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-h----
Q 001915 558 MR-------AR-----------GARV--TDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-P---- 611 (996)
Q Consensus 558 mr-------~r-----------ga~~--ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~---- 611 (996)
+. .. .+.. +|++||+++.+ +++.+.+.+++..+.. ++|+|+|+||+|+.... .
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 11 11 1223 34566666555 5788877777777754 89999999999985311 1
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHH
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl 653 (996)
..+...+..++ ++++++||+++.++++++..|.
T Consensus 190 ~~i~~~~~~~~---------i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 190 KQIMKEIQEHK---------IKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp HHHHHHHHHHT---------CCCCCCC---------------
T ss_pred HHHHHHHHHcC---------CeEEeCCCCCCcCHHHHHHHHH
Confidence 22233333332 5688999999999998776653
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.03 E-value=6.2e-10 Score=123.33 Aligned_cols=116 Identities=10% Similarity=0.052 Sum_probs=79.0
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecC-------CCCCh----hHHHHHHHHHH----cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD-------DGIRP----QTNEAIAHAKA----AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAs-------dgv~~----Qt~E~I~~ak~----~~IPIIVVINKi 604 (996)
+++.+.+|||+|++.|..+|..+++.++++|+|+|++ +.... .....+..+.. .++|+|+++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4578999999999999999999999999999999886 22111 22233333322 468999999999
Q ss_pred CCCC-------------------CChhHHHHHHHhc--CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 605 DKDG-------------------ANPERVMQELSSI--GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 605 DL~~-------------------a~~erv~~eL~~~--gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
|+.. .+.+.....+... .+... -...+.++++||+++.||+++|+.+....
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~-~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-TTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-ccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 9832 1223333222211 11111 11246788999999999999999987553
No 204
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.01 E-value=7.4e-10 Score=123.32 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=79.0
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC----------C-CChhHHHHHHHHHH----cCCCEEEEeccc
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD----------G-IRPQTNEAIAHAKA----AGVPIVIAINKI 604 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd----------g-v~~Qt~E~I~~ak~----~~IPIIVVINKi 604 (996)
+.+.+.+|||+|++.|..+|..+++.++++|+|+|+++ . -.......+..+.. .++|+|+++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 45789999999999999999999999999999999982 1 11222233333322 478999999999
Q ss_pred CCCC------------------CChhHHHHHHHhcC--------CCCCCC----------CCCCcEEEeccCCCCChhhH
Q 001915 605 DKDG------------------ANPERVMQELSSIG--------LMPEDW----------GGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 605 DL~~------------------a~~erv~~eL~~~g--------l~~e~~----------gg~ipvVeISAktGeGIdEL 648 (996)
|+.. .+.+.....+...- +....- +..+.++++||++..||..+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9832 12233333222211 111100 02467899999999999999
Q ss_pred HHHHHHHH
Q 001915 649 LETIMLVA 656 (996)
Q Consensus 649 ~eaIl~la 656 (996)
|+.+....
T Consensus 319 F~~v~~~I 326 (340)
T 4fid_A 319 FMLAVDVI 326 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887554
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=9.1e-10 Score=121.86 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc------CCccc-cccC-----------------CceeeeceEEEEEe--------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK------TKVAA-AEAG-----------------GITQGIGAYKVQVP-------- 536 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~------s~va~-se~g-----------------GiTqdI~a~~V~i~-------- 536 (996)
.+...|+|+|.+|+|||||++.|.+ .++.. +... -..++...+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4667899999999999999999973 22211 1100 11111112211110
Q ss_pred ----------eCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCC
Q 001915 537 ----------VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 537 ----------idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL 606 (996)
++..+..+.|+||||.-.-. ......+|++++|+|+..+...+... ..+ ..++.++++||+|+
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~--~~i--~~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK--KGI--FELADMIAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC--TTH--HHHCSEEEEECCST
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH--HHH--hccccEEEEEchhc
Confidence 11235689999999953211 12247899999999986432111000 000 12466888899997
Q ss_pred CCCCh--hHHHHHHHh-cCCCC---CCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 607 DGANP--ERVMQELSS-IGLMP---EDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 607 ~~a~~--erv~~eL~~-~gl~~---e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
..... ....+.+.. ..+.. ..| ..+++++||++|.|+++|++.|....
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43111 111222222 11111 112 35799999999999999999997654
No 206
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.98 E-value=3.3e-10 Score=126.56 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=87.6
Q ss_pred ceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-----------ChhHHHHHHHHHH
Q 001915 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-----------RPQTNEAIAHAKA 592 (996)
Q Consensus 524 iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-----------~~Qt~E~I~~ak~ 592 (996)
.|.++..+.+. + +.+.+.+|||+|++.|..+|..++..+|++|+|||+++-- +......+..+..
T Consensus 179 ~T~Gi~~~~~~--~--~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIVETHFT--F--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEEEEEEE--E--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceEEEEEe--e--CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 45555443333 2 3578999999999999999999999999999999998721 2223333333332
Q ss_pred ----cCCCEEEEecccCCCC------------------CChhHHHHHHHhc--CCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 593 ----AGVPIVIAINKIDKDG------------------ANPERVMQELSSI--GLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 593 ----~~IPIIVVINKiDL~~------------------a~~erv~~eL~~~--gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
.++|+|+++||+|+.. .+.++....+... .+........+.+++|||++|.||+++
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 4689999999999831 2233333333321 111110123478999999999999999
Q ss_pred HHHHHHHH
Q 001915 649 LETIMLVA 656 (996)
Q Consensus 649 ~eaIl~la 656 (996)
|+++....
T Consensus 335 F~~v~~~i 342 (353)
T 1cip_A 335 FDAVTDVI 342 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 207
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.93 E-value=1.3e-09 Score=122.09 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=90.3
Q ss_pred CCCCHHHH--HHHHHcCCcccc-----ccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEE
Q 001915 500 VDHGKTTL--LDHIRKTKVAAA-----EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (996)
Q Consensus 500 ~dvGKTSL--LnrL~~s~va~s-----e~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILV 572 (996)
.++.+--| +++|....+..+ .....|.++..+.+. + +.+.+.+|||+|++.|..++..++..++++|+|
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~--~--~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv 231 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFE--I--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL 231 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEE--E--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEee--e--CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEE
Confidence 56666655 556655444322 122345555443333 2 357899999999999999999999999999999
Q ss_pred EecCCCC-----------ChhHHHHHHHHHH----cCCCEEEEecccCCCC-------------------CChhHHHHHH
Q 001915 573 VAADDGI-----------RPQTNEAIAHAKA----AGVPIVIAINKIDKDG-------------------ANPERVMQEL 618 (996)
Q Consensus 573 VDAsdgv-----------~~Qt~E~I~~ak~----~~IPIIVVINKiDL~~-------------------a~~erv~~eL 618 (996)
||+++-- +......+..+.. .++|+|+++||+|+.. .+.++....+
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 311 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHH
Confidence 9999721 1122233333322 4689999999999841 2233333322
Q ss_pred Hhc--CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 619 SSI--GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 619 ~~~--gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
... .+........+.++++||+++.||+++|+++.....
T Consensus 312 ~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 312 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 110 111110023467899999999999999999876543
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=2.2e-09 Score=125.11 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH------cCCccccc--c--CCc--------e-eeeceEEEEEe-------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIR------KTKVAAAE--A--GGI--------T-QGIGAYKVQVP------------- 536 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~------~s~va~se--~--gGi--------T-qdI~a~~V~i~------------- 536 (996)
.++.+|+|+|++|+|||||+++|. +.++..-. . ++. + .++.++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356689999999999999999997 33332110 0 000 0 01222211000
Q ss_pred eCCccccEEEEeCCCccc----hHHHHHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCE-EEEecccCCCCC
Q 001915 537 VDGKLQPCVFLDTPGHEA----FGAMRARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI-VIAINKIDKDGA 609 (996)
Q Consensus 537 idgk~~~ItfIDTPGhE~----F~~mr~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPI-IVVINKiDL~~a 609 (996)
+...++.+.||||||... +....... +..+|.++||+|+..+.. ....+..+... +|+ ++++||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 001456899999999642 22221111 237899999999998753 33334444332 785 899999998532
Q ss_pred ChhHHHHHHHhcCCC---------CCCCCCCCcEEEeccCCCCC-hhhHHHHHHH
Q 001915 610 NPERVMQELSSIGLM---------PEDWGGDIPMVQISALKGEK-VDDLLETIML 654 (996)
Q Consensus 610 ~~erv~~eL~~~gl~---------~e~~gg~ipvVeISAktGeG-IdEL~eaIl~ 654 (996)
...........+.. ...+....+.+++||++|.| +++|++++..
T Consensus 256 -~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 256 -GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp -CTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred -hHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 22233322222211 11111223566789999999 9999999864
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=2.5e-09 Score=116.24 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=87.4
Q ss_pred HHHHHHHcCCcc-ccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCC-ChhH
Q 001915 506 TLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQT 583 (996)
Q Consensus 506 SLLnrL~~s~va-~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt 583 (996)
+|+.++....+. .... .|.+ ..+.+. +..+. .+.+||| |+.|..++..+++.+|++|+|+|+++.. ....
T Consensus 32 sl~~~~~~~~f~~~~~~--pTiG-d~~~~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLK--IYVG-DRVEYT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCC--CCTT-CEEEEE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCC--CCCc-cEEEEE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence 466555555554 2222 3433 222333 22222 7999999 9999999999999999999999999864 3332
Q ss_pred -HHHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHHHHH
Q 001915 584 -NEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 584 -~E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaI 652 (996)
..++..+...++|+|+|+||+|+..... ++....+..+.. . +++++|||++|.||+++|+.+
T Consensus 104 l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~------~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 104 IDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSG------L-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT------T-SCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh------h-CcEEEEECCCCcCHHHHHHHh
Confidence 3344455567899999999999954211 112222222221 1 579999999999999999876
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.75 E-value=5e-09 Score=117.12 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCCCHHHH--HHHHHcCCccccc-----cCCceeeeceEEEEEeeCC----ccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 500 VDHGKTTL--LDHIRKTKVAAAE-----AGGITQGIGAYKVQVPVDG----KLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 500 ~dvGKTSL--LnrL~~s~va~se-----~gGiTqdI~a~~V~i~idg----k~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
.++.+.-| ++++....+..+. ....|.++.. ..+.+++ ..+.+.+|||+|++.|..++..+++.+|+
T Consensus 132 ~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e--~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~ 209 (354)
T 2xtz_A 132 PDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVE--IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTA 209 (354)
T ss_dssp CTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSEEE--EEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEE
T ss_pred hccHHHHHHHHHHHhcCCCCCCchheeeecccccceee--EEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCE
Confidence 56666555 5555544433221 1223444433 3333444 56789999999999999999999999999
Q ss_pred EEEEEecCC-------CC----ChhHHHHHHHHHH----cCCCEEEEecccCCCCC-----C------------------
Q 001915 569 AVIVVAADD-------GI----RPQTNEAIAHAKA----AGVPIVIAINKIDKDGA-----N------------------ 610 (996)
Q Consensus 569 VILVVDAsd-------gv----~~Qt~E~I~~ak~----~~IPIIVVINKiDL~~a-----~------------------ 610 (996)
+|+|+|+++ .. .......+..+.. .++|+|+++||+|+... .
T Consensus 210 iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~ 289 (354)
T 2xtz_A 210 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQ 289 (354)
T ss_dssp EEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHH
T ss_pred EEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCc
Confidence 999999971 11 1122233333322 46899999999998321 0
Q ss_pred -hhHHHHHHHhc-------CCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHHHH
Q 001915 611 -PERVMQELSSI-------GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 611 -~erv~~eL~~~-------gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~lae 657 (996)
.++....+... .-....-...+.+++|||+++.||+++|+++.....
T Consensus 290 ~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 290 EIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 11111111110 000000011245789999999999999999876543
No 211
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.65 E-value=1.8e-08 Score=114.59 Aligned_cols=129 Identities=16% Similarity=0.070 Sum_probs=81.8
Q ss_pred eeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCC----------CC-ChhHHHHHHHHHH-
Q 001915 525 TQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD----------GI-RPQTNEAIAHAKA- 592 (996)
Q Consensus 525 TqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsd----------gv-~~Qt~E~I~~ak~- 592 (996)
|.++..+.+. ++ ++.+.||||+|++.|..++..+++.++++|||||+++ .- ......++..+..
T Consensus 204 TiGi~~~~~~--~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFETKFQ--VD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEEEEEE--ET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEEEEee--cC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 5555443333 33 4789999999999999999999999999999999987 11 1122333333322
Q ss_pred ---cCCCEEEEecccCCCCCC---------------------------------hhHHHHHH----HhcCCCCCCCCCCC
Q 001915 593 ---AGVPIVIAINKIDKDGAN---------------------------------PERVMQEL----SSIGLMPEDWGGDI 632 (996)
Q Consensus 593 ---~~IPIIVVINKiDL~~a~---------------------------------~erv~~eL----~~~gl~~e~~gg~i 632 (996)
.++|+||++||+|+.... .+.....+ ....-....-...+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 368999999999983210 01111111 11100000000135
Q ss_pred cEEEeccCCCCChhhHHHHHHHHHH
Q 001915 633 PMVQISALKGEKVDDLLETIMLVAE 657 (996)
Q Consensus 633 pvVeISAktGeGIdEL~eaIl~lae 657 (996)
.++++||+++.||+++|+++.....
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHH
Confidence 6789999999999999999865543
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.62 E-value=3.7e-08 Score=111.79 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=53.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCc---------------cccEEEEeCCCc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPGH 552 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk---------------~~~ItfIDTPGh 552 (996)
.....+|+|+|.+|+|||||+|+|.+..+.....+++|.+.....+.+ .+. ...++||||||+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--PDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--CCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--CCccceeeccccCcccccccccEEEECCCc
Confidence 345678999999999999999999988777777788888776665543 221 224999999997
Q ss_pred cchHH-------HHHHhhhcCCeEEEEEecCC
Q 001915 553 EAFGA-------MRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 553 E~F~~-------mr~rga~~ADiVILVVDAsd 577 (996)
..+.. ....+++.+|++++|+|+.+
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 76543 44567799999999999975
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.61 E-value=2.1e-09 Score=120.36 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC------CccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchH-------H
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-------A 557 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s------~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~-------~ 557 (996)
..+|+++|.+|+|||||+|+|.+. ....+..+|+|++... +.++. .+.++||||..... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~----~~~~~---~~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE----IPLES---GATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE----EECST---TCEEEECCSCCCCSSGGGGSCT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE----EEeCC---CeEEEeCCCcCcHHHHHHHHhH
Confidence 468999999999999999999975 4456677888887532 22222 48999999932111 1
Q ss_pred HHHHhh---hcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC-ChhHHHHHHHh
Q 001915 558 MRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSS 620 (996)
Q Consensus 558 mr~rga---~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a-~~erv~~eL~~ 620 (996)
.....+ ...|.++++++............+..+...+.|+++++||+|..+. ..+...+.+.+
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~ 301 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYAN 301 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHH
Confidence 111222 6789999999985321111111123334457899999999998532 23334444433
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.52 E-value=4.1e-09 Score=118.08 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC-------ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccc-------hH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK-------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FG 556 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~-------va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~-------F~ 556 (996)
..+|+++|.+|+|||||+|+|.+.. ...+..+|+|++... +.+.. .+.++||||... +.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~----~~~~~---~~~liDtPG~~~~~~~~~~l~ 232 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID----IPLDE---ESSLYDTPGIINHHQMAHYVG 232 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE----EESSS---SCEEEECCCBCCTTSGGGGSC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE----EEecC---CeEEEeCCCcCcHHHHHHHhh
Confidence 4689999999999999999998652 224667788877532 22222 389999999421 11
Q ss_pred HH-HHHh--hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC
Q 001915 557 AM-RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 557 ~m-r~rg--a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~ 608 (996)
.. .... ....+.++++++............+..+...++|+++++||+|..+
T Consensus 233 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 233 KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 11 1122 2667889999988532111111112333345789999999999854
No 215
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.48 E-value=7.8e-08 Score=104.75 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=66.3
Q ss_pred ccchHHHHHHhhhcCCeEEEEEecCCCC-ChhH-HHHHHHHHHcCCCEEEEecccCCCCCC----hhHHHHHHHhcCCCC
Q 001915 552 HEAFGAMRARGARVTDIAVIVVAADDGI-RPQT-NEAIAHAKAAGVPIVIAINKIDKDGAN----PERVMQELSSIGLMP 625 (996)
Q Consensus 552 hE~F~~mr~rga~~ADiVILVVDAsdgv-~~Qt-~E~I~~ak~~~IPIIVVINKiDL~~a~----~erv~~eL~~~gl~~ 625 (996)
|+.|..+...++..+|++|+|+|+++.. .... ..++..+...++|+|+|+||+|+.... .+.....+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~---- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC----
Confidence 6777776667889999999999999763 4443 234455666899999999999995421 11112222222
Q ss_pred CCCCCCCcEEEeccCCCCChhhHHHHH
Q 001915 626 EDWGGDIPMVQISALKGEKVDDLLETI 652 (996)
Q Consensus 626 e~~gg~ipvVeISAktGeGIdEL~eaI 652 (996)
.++++++||++|.|+++|++.+
T Consensus 142 -----g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 142 -----GYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp -----TCEEEECCTTTCTTHHHHHHHT
T ss_pred -----CCeEEEEECCCCCCHHHHHhhc
Confidence 2579999999999999999875
No 216
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.44 E-value=3.6e-07 Score=96.00 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=68.5
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHH----HHH----cCCCEEEEeccc-CCCCC-ChhHHHHHHHh
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAH----AKA----AGVPIVIAINKI-DKDGA-NPERVMQELSS 620 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~----ak~----~~IPIIVVINKi-DL~~a-~~erv~~eL~~ 620 (996)
||..+..+|..|+..+|++|||||++|......++.+.. +.. .++|++|+.||. |++++ +..++.+.|.-
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L 190 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHL 190 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTG
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCC
Confidence 789999999999999999999999998643334443321 211 478999999995 78654 45666665544
Q ss_pred cCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHH
Q 001915 621 IGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (996)
Q Consensus 621 ~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~ 654 (996)
..+ .. ...+..|||++|+|+.+-++||..
T Consensus 191 ~~l-~R----~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 191 NLL-NH----PWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp GGG-CS----CEEEEEEETTTCTTHHHHHHHHTT
T ss_pred cCC-CC----CEEEEEeECCCCcCHHHHHHHHHH
Confidence 333 12 356999999999999999999963
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.41 E-value=3.5e-06 Score=96.10 Aligned_cols=164 Identities=14% Similarity=0.207 Sum_probs=97.7
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcCCcc-ccc--cCC--ceeeeceEEEEEeeCCccccEEEEeCCCcc----ch
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAE--AGG--ITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----AF 555 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s~va-~se--~gG--iTqdI~a~~V~i~idgk~~~ItfIDTPGhE----~F 555 (996)
.....+...|+|+|++|+|||||+|.|.+-... .+. ..+ +|+. .+... ......++++|+||.. ..
T Consensus 63 ~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q---~~~~~~ltv~D~~g~~~~~~~~ 137 (413)
T 1tq4_A 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYK---HPNIPNVVFWDLPGIGSTNFPP 137 (413)
T ss_dssp HHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEE---CSSCTTEEEEECCCGGGSSCCH
T ss_pred hhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEecc---ccccCCeeehHhhcccchHHHH
Confidence 344456779999999999999999999873221 110 111 2222 11111 1122369999999942 12
Q ss_pred H-HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCC-------CC---ChhHHHHHHHhcCCC
Q 001915 556 G-AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-------GA---NPERVMQELSSIGLM 624 (996)
Q Consensus 556 ~-~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~-------~a---~~erv~~eL~~~gl~ 624 (996)
. .+...++...|..++ ++... .+.|....++.+...+.|+++|+||.|+. +- ...++.+.+......
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 2 223334455566555 76654 57777878888888899999999999973 11 233343333332100
Q ss_pred -CCCC-CCCCcEEEecc--CCCCChhhHHHHHHHH
Q 001915 625 -PEDW-GGDIPMVQISA--LKGEKVDDLLETIMLV 655 (996)
Q Consensus 625 -~e~~-gg~ipvVeISA--ktGeGIdEL~eaIl~l 655 (996)
.... .....+|.+|+ ..+.|+++|.+.|...
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 0000 01246899999 6777899999998643
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=105.04 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=69.1
Q ss_pred CCCCE--EEEEcCCCCCHHHHHHHHHcCCccccc----cCCceeeeceEEEEEeeCCccccEEEEeCCCccch-------
Q 001915 489 DRPPV--LTIMGHVDHGKTTLLDHIRKTKVAAAE----AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------- 555 (996)
Q Consensus 489 ~Rppk--VaIVGh~dvGKTSLLnrL~~s~va~se----~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F------- 555 (996)
.+... ++|+|++|+|||||++.|.+..+.... .++.++..-.+. ....+-...++++|++|....
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v--~Q~~~l~~~ltv~D~~~~g~~~~~~~~~ 115 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYD--LQESNVRLKLTIVSTVGFGDQINKEDSY 115 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEE--EEC--CEEEEEEEEEECCCC-CCHHHHS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEE--eecCccccccchhhhhhhhhccccchhh
Confidence 44555 999999999999999999876532111 123333211111 111122236899999984321
Q ss_pred -----------HHHHHHhh---------hcC--C-eEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCC
Q 001915 556 -----------GAMRARGA---------RVT--D-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 556 -----------~~mr~rga---------~~A--D-iVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~ 608 (996)
......+. ..+ | +++|++|+.+++.+.+.+.++.+. .++|+|+++||+|...
T Consensus 116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 11111111 112 2 466788888899999988888876 6899999999999853
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=1.7e-06 Score=97.99 Aligned_cols=87 Identities=25% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCc---------------cccEEEEeCCCc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGK---------------LQPCVFLDTPGH 552 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk---------------~~~ItfIDTPGh 552 (996)
.+..+|+|+|++|+|||||+|+|.+..+ .....+++|++.....+.+. +. ...+.||||||.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~--~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP--DERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC--CHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeC--CcchhhhhhhcccccccCcceEEEecccc
Confidence 4568999999999999999999999877 67778888888776666542 21 125899999993
Q ss_pred -------cchHHHHHHhhhcCCeEEEEEecCC
Q 001915 553 -------EAFGAMRARGARVTDIAVIVVAADD 577 (996)
Q Consensus 553 -------E~F~~mr~rga~~ADiVILVVDAsd 577 (996)
+.+.......++.+|.+++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344455667789999999999975
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.25 E-value=4.5e-07 Score=103.91 Aligned_cols=159 Identities=20% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC------Ccccc--c-----------------------cCCceeeeceEEEEEeeC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT------KVAAA--E-----------------------AGGITQGIGAYKVQVPVD 538 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s------~va~s--e-----------------------~gGiTqdI~a~~V~i~id 538 (996)
++.+|+|+|.+|+|||||+..|... ++..- . .+++|.+........-..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998642 22100 0 000111100000000000
Q ss_pred CccccEEEEeCCCccchH-----HHHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCC-C-EEEEecccCCCCCC
Q 001915 539 GKLQPCVFLDTPGHEAFG-----AMRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-P-IVIAINKIDKDGAN 610 (996)
Q Consensus 539 gk~~~ItfIDTPGhE~F~-----~mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~I-P-IIVVINKiDL~~a~ 610 (996)
...+.+.|+||||..... .+.. ..+..+|.++||+|+..+. .....+..+. ..+ | ..+++||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc-c
Confidence 134679999999954321 1111 1123689999999998763 2233333332 246 7 889999999843 2
Q ss_pred hhHHHHHHHhcCCC---------CCCCCCCCcEEEeccCCCCC-hhhHHHHH
Q 001915 611 PERVMQELSSIGLM---------PEDWGGDIPMVQISALKGEK-VDDLLETI 652 (996)
Q Consensus 611 ~erv~~eL~~~gl~---------~e~~gg~ipvVeISAktGeG-IdEL~eaI 652 (996)
...........+.. ..++....+..++|+..|.| +..|++.+
T Consensus 254 ~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 254 GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
Confidence 23333333333211 01111123445567777777 77666655
No 221
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.25 E-value=2.5e-06 Score=81.43 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=65.2
Q ss_pred EEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC-CCCC
Q 001915 885 IGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD-DLEE 962 (996)
Q Consensus 885 ~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~-d~~~ 962 (996)
.|...|+.+|+. -.+.|.| +|..|.|+.|.++ ++.- ..|+|.||+...+.|+++.+|++|+|.|++.. +|++
T Consensus 34 P~k~~ilp~~~~vFgpvivG-rVe~G~LK~G~~V----Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~~I~~ 107 (116)
T 1xe1_A 34 AGKVVVEEVVNIMGKDVIIG-TVESGMIGVGFKV----KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIGKVKK 107 (116)
T ss_dssp SEEEEEEEEEEETTEEEEEE-EEEEEEEETTCEE----ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCCCCCT
T ss_pred cEEEEEEecCCeEECCeeEE-EEeEEEEcCCCCc----CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCccccCC
Confidence 355566663321 1568889 9999999999987 3321 37899999999999999999999999999866 9999
Q ss_pred CCEEEEEE
Q 001915 963 GDIIEAFN 970 (996)
Q Consensus 963 GD~ie~y~ 970 (996)
||++++|.
T Consensus 108 GdVLyv~~ 115 (116)
T 1xe1_A 108 GDVLEIYQ 115 (116)
T ss_dssp TCEEEEEC
T ss_pred CcEEEEec
Confidence 99999984
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.24 E-value=2.8e-06 Score=91.30 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCccc-c-------ccCCceeeeceEEEEEeeC--CccccEEEEeCCCccc-------
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA-A-------EAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEA------- 554 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~va~-s-------e~gGiTqdI~a~~V~i~id--gk~~~ItfIDTPGhE~------- 554 (996)
++++|+|+.|+|||||++.|.+..... + .....+. ...+.+... +-...++++|++|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~---~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE---IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS---CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee---eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 579999999999999999998543221 1 0111110 011111111 1123689999998311
Q ss_pred ------hH-----HHHHH----------hhhcCCeEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEecccCCCC
Q 001915 555 ------FG-----AMRAR----------GARVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (996)
Q Consensus 555 ------F~-----~mr~r----------ga~~ADiVILVVDAs-dgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~ 608 (996)
|. ..... ....++++++++|-. +++.+.+.+.+..+... +++|+++||+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 11 00111 112368899999955 78999999999888876 99999999999854
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.21 E-value=2.6e-06 Score=93.28 Aligned_cols=101 Identities=14% Similarity=-0.022 Sum_probs=73.2
Q ss_pred CCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHH----HHH---H-HcCCCEEEEecc-cCCCCC-ChhHHHHHHH
Q 001915 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAI----AHA---K-AAGVPIVIAINK-IDKDGA-NPERVMQELS 619 (996)
Q Consensus 550 PGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I----~~a---k-~~~IPIIVVINK-iDL~~a-~~erv~~eL~ 619 (996)
.||+.+..+|..|+..+|++|+|||++|.......+.+ ..+ . ..++|++|+.|| .|++++ +..++.+.|.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 47899999999999999999999999986433343322 222 1 158999999997 588754 4556665554
Q ss_pred hcCCCCCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 620 SIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 620 ~~gl~~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
-..+. ....+..|||++|+|+.+-++||...
T Consensus 275 L~~l~-----r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNLLN-----HPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGGGC-----SCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CccCC-----CcEEEEecccCCCcCHHHHHHHHHHH
Confidence 43331 23569999999999999999999743
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.20 E-value=3.3e-06 Score=91.27 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=67.1
Q ss_pred EEeCCCcc-chHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCChhHHHHHHHhcCCC
Q 001915 546 FLDTPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLM 624 (996)
Q Consensus 546 fIDTPGhE-~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~erv~~eL~~~gl~ 624 (996)
+-+.|||. .........+..+|++++|+|+.++.........+.+ .++|.++|+||+|+.. ......++..+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~~~~~~~~~~~-- 76 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--AAVTQQWKEHFE-- 76 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--HHHHHHHHHHHH--
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--HHHHHHHHHHHH--
Confidence 44679987 4556667788999999999999987766543333333 5799999999999964 222222222110
Q ss_pred CCCCCCCCcEEEeccCCCCChhhHHHHHHHHH
Q 001915 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGIdEL~eaIl~la 656 (996)
. ..++++++||++|.|+++|++.|..+.
T Consensus 77 --~--~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 77 --N--QGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp --T--TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred --h--cCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 0 124799999999999999999887554
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=6.4e-06 Score=94.80 Aligned_cols=146 Identities=21% Similarity=0.303 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------CCccc--ccc--CC---------ceeeeceEEEEEe-------------e
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAA--AEA--GG---------ITQGIGAYKVQVP-------------V 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~------s~va~--se~--gG---------iTqdI~a~~V~i~-------------i 537 (996)
++.+|+++|.+|+||||++..|.. .++.. .+. ++ ...++..+..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 567899999999999999998862 22211 000 00 0001111110000 0
Q ss_pred CCccccEEEEeCCCccc----hH-HHHH-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCCh
Q 001915 538 DGKLQPCVFLDTPGHEA----FG-AMRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~----F~-~mr~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~~ 611 (996)
...++.+.|+||||... .. .+.. ..+..+|.++||+|+..+. .....+..+...-.+..|++||+|... ..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~-~g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSA-KG 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCS-SH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcc-cc
Confidence 01236899999999322 11 1211 2335689999999998742 233344444443345679999999842 22
Q ss_pred hHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 612 erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
..+....... ..|+.+++. |+++++|.
T Consensus 256 G~~ls~~~~~---------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 256 GGALSAVAAT---------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp HHHHHHHHTT---------CCCEEEEEC--SSSTTCEE
T ss_pred cHHHHHHHHH---------CCCEEEEEc--CCChHHhh
Confidence 2223222222 357777775 88887764
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.02 E-value=5.9e-06 Score=92.54 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=66.5
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC--hhHHHHHH----HhcCCC
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQEL----SSIGLM 624 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~--~erv~~eL----~~~gl~ 624 (996)
..++|..++..+++.+|++|+|+|+.+....+..+..+++ .++|+|+|+||+|+.... .+++.+++ ...++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 4588999999899999999999999874222111221221 378999999999995432 23333332 223321
Q ss_pred CCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+++++||++|.|+++|++.|...
T Consensus 133 ------~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 133 ------PEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp ------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------cccEEEEeCCCCcCHHHHHhhhhhh
Confidence 1368999999999999999998643
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.02 E-value=8.1e-06 Score=91.42 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=68.6
Q ss_pred CccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC--hhHHHHHHH----hcCCC
Q 001915 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELS----SIGLM 624 (996)
Q Consensus 551 GhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~--~erv~~eL~----~~gl~ 624 (996)
.+++|......++..+|++|+|+|+.+....+..+..+.+ .+.|+|+|+||+|+.... .+.+.+++. ..++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 3789999999888999999999999986544333333332 378999999999995432 333444332 22221
Q ss_pred CCCCCCCCcEEEeccCCCCChhhHHHHHHHH
Q 001915 625 PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (996)
Q Consensus 625 ~e~~gg~ipvVeISAktGeGIdEL~eaIl~l 655 (996)
..+++++||++|.|+++|++.|...
T Consensus 135 ------~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 135 ------PVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp ------CSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ------cccEEEEECCCCCCHHHHHHHHHhh
Confidence 1368999999999999999988643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=1.1e-05 Score=92.49 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------CCccc--cccC--C---------ceeeeceEEEEE-------------ee
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAA--AEAG--G---------ITQGIGAYKVQV-------------PV 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~------s~va~--se~g--G---------iTqdI~a~~V~i-------------~i 537 (996)
++.+|+++|++|+||||++..|.. .++.. .+.. + ...++..+.... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467899999999999999998852 22211 0000 0 000111111000 00
Q ss_pred CCccccEEEEeCCCccc------hHHHHHH--hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEA------FGAMRAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA 609 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~------F~~mr~r--ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a 609 (996)
....+.+.|+||||... +...... .+...|.++||+|+..+. .....+..+...-.+..|++||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccc-c
Confidence 11356799999999533 2222221 223569999999998752 23344444444445688999999975 2
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 610 NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 610 ~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
....+.......+ .|+.+++. |+++++|
T Consensus 253 ~~G~als~~~~~g---------~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 253 KGGGALSAVVATG---------ATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CHHHHHHHHHHHT---------CEEEEEEC--CSSSSCE
T ss_pred cchHHHHHHHHHC---------CCEEEEEC--CCChHhC
Confidence 3333444444332 57777775 8888643
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.98 E-value=9.4e-06 Score=96.46 Aligned_cols=100 Identities=22% Similarity=0.237 Sum_probs=62.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCC----ceeeeceEEEEEeeCCccccEEEEeCCCccchH------
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG----ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------ 556 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gG----iTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~------ 556 (996)
+..+..+|+|+|.+|+|||||+|+|.+..... ..++ .|.++..+..... ...+..+.|+||||.....
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~~~~~~~~ 111 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDVEKGDNQN 111 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCGGGCCCTT
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcccccchhH
Confidence 44456789999999999999999999876433 3333 3444333322221 2334679999999943211
Q ss_pred --HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHH
Q 001915 557 --AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHA 590 (996)
Q Consensus 557 --~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~a 590 (996)
......+-.++ ++|||+..++..+..+.+..+
T Consensus 112 ~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 112 DSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHHH
Confidence 11111222234 678888888888887766544
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.91 E-value=9.3e-06 Score=87.79 Aligned_cols=58 Identities=31% Similarity=0.427 Sum_probs=36.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCC-ccccccCCceeeeceEEEEEeeCCccccEEEEeCCCc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s~-va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGh 552 (996)
..++.+|+++|.+|+|||||+|+|.+.. ...+..+|+|++...+. .+ ..+.++||||.
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~~---~~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK----VG---KELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE----ET---TTEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE----eC---CCEEEEECcCc
Confidence 4567899999999999999999999876 44667788888764322 12 36999999994
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.89 E-value=0.0001 Score=80.29 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc------CCccc--cccCCc---------eeeeceEEEEEe---------------e
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK------TKVAA--AEAGGI---------TQGIGAYKVQVP---------------V 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~------s~va~--se~gGi---------TqdI~a~~V~i~---------------i 537 (996)
++.+|+++|.+|+||||++..|.. .++.. .+.... ....+...+... .
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 366899999999999999998852 22211 110000 000011001000 0
Q ss_pred CCccccEEEEeCCCccc--hHH-HHH-----HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCC
Q 001915 538 DGKLQPCVFLDTPGHEA--FGA-MRA-----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~--F~~-mr~-----rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~ 608 (996)
....+.+.|+||||... ... ++. ..+..+|.++||+|+..+ ....+.++.+.. ..+ ..+++||+|...
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 01346799999999655 321 111 234678999999999754 333444444443 477 788999999742
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhHH
Q 001915 609 ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (996)
Q Consensus 609 a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL~ 649 (996)
....+....... ..|+.+++ +|+++++|.
T Consensus 254 -~~g~~~~~~~~~---------~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 254 -KGGGALSAVAAT---------GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp -THHHHHHHHHTT---------TCCEEEEE--CSSSTTCEE
T ss_pred -chHHHHHHHHHH---------CcCEEEEe--CCCChhhcc
Confidence 222233322222 25677766 688887653
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.68 E-value=1.3e-05 Score=85.74 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=58.5
Q ss_pred CCCccchH-HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC-hhHHHHHHHhcCCCCC
Q 001915 549 TPGHEAFG-AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPE 626 (996)
Q Consensus 549 TPGhE~F~-~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~-~erv~~eL~~~gl~~e 626 (996)
-|||.... ......+..+|++|+|+|+.++........- ++ ++|.|+|+||+|+.... .+.....+...+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g---- 75 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKKQG---- 75 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTT----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHHcC----
Confidence 48986543 3556778999999999999987655432111 22 89999999999996421 112222232222
Q ss_pred CCCCCCcEEEeccCCCCChhhHHHHHH
Q 001915 627 DWGGDIPMVQISALKGEKVDDLLETIM 653 (996)
Q Consensus 627 ~~gg~ipvVeISAktGeGIdEL~eaIl 653 (996)
+++ ++||++|.|+++|++.|.
T Consensus 76 -----~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 76 -----KRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp -----CCE-EECCTTSCHHHHHHHHCC
T ss_pred -----CeE-EEECCCCcCHHHHHHHHH
Confidence 457 999999999999988764
No 233
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.51 E-value=4.9e-05 Score=81.33 Aligned_cols=55 Identities=27% Similarity=0.532 Sum_probs=36.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCCc-cccccCCceeeeceEEEEEeeCCccccEEEEeCCCcc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s~v-a~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE 553 (996)
.+|+++|.+|+|||||+|+|.+... ..+..+|+|.+...+. .+ ..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~----~~---~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS----LE---NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE----CT---TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE----eC---CCEEEEECCCcc
Confidence 7999999999999999999997765 3556667777653221 12 368999999954
No 234
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.50 E-value=0.00091 Score=75.26 Aligned_cols=183 Identities=19% Similarity=0.266 Sum_probs=116.8
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCChh--hHHHHHhcC-C-EEEEec-CCCC--h--------hHHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISAS--DVDLAVASK-A-IILGFN-VKAP--G--------SVKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~Ites--DV~lA~as~-a-iIl~Fn-v~~~--~--------~~~~~A~ 849 (996)
.|+-|..+-....+..+..-++-+-|+.+.-|...+. -+.++...+ . +|+..| +... . +++++++
T Consensus 80 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 3666765555555555666667777777665543222 122333333 2 556666 2221 1 2333444
Q ss_pred hcC-----ceEEEechHh-------------------HHHHHHHHHHHccccc-ceeeeeEEeEEEEEEee-cCCceEEE
Q 001915 850 NKG-----VEIRLYRVIY-------------------DLIDDMRNAMEGLLET-VEEQVPIGSAEVRAIFS-SGSGRVAG 903 (996)
Q Consensus 850 ~~~-----V~I~~~~IIY-------------------~Liddik~~~~~~l~~-~~~e~~~G~A~V~~vF~-~~~g~IaG 903 (996)
+.+ +.++.-+-.. .-++++.+++..++++ .....---.+-|..+|. ...|.|+.
T Consensus 160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~ 239 (405)
T 2c78_A 160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVAT 239 (405)
T ss_dssp HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEE
T ss_pred HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEE
Confidence 444 5565443322 2266666666665553 22211112445668887 46799999
Q ss_pred EEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 904 CMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 904 c~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
.+|.+|.|+.|..+.++..+.--...+|.||..+.++|.++.+|+-||+.+.+. .|++.||+|-
T Consensus 240 g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 240 GRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLA 305 (405)
T ss_dssp EECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEE
T ss_pred EEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEE
Confidence 999999999999999987552113568999999999999999999999999865 7999999984
No 235
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.49 E-value=0.0011 Score=74.35 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=112.9
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCcC--ChhhHHHHHhcC-CE-EEEecCCCC----------hhHHhHHHh
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDI--SASDVDLAVASK-AI-ILGFNVKAP----------GSVKTYADN 850 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~I--tesDV~lA~as~-ai-Il~Fnv~~~----------~~~~~~A~~ 850 (996)
-|+-|-.+-+...+..+..-++-+=|+. .-|.. |..-+.++...+ -. |+..|-+.+ .++++++++
T Consensus 65 iDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 65 VDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSG 143 (370)
T ss_dssp EECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTT
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 3666655444455555555566666665 54544 333444444433 23 677773322 122333333
Q ss_pred c---CceEEE----------echHhHHHHHHHHHHHccccccee-eeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCC
Q 001915 851 K---GVEIRL----------YRVIYDLIDDMRNAMEGLLETVEE-QVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGC 915 (996)
Q Consensus 851 ~---~V~I~~----------~~IIY~Liddik~~~~~~l~~~~~-e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~ 915 (996)
. .+.++. +.-|-+|++.+.+++....++... ...--+.-|..+|+. ..|.++..+|..|.++.|.
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd 223 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKD 223 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTC
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCC
Confidence 2 367776 555666666666655432111100 001113457789985 5788999999999999999
Q ss_pred cEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 916 GIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 916 ~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.+.+...+. ..+|.||+.+.++|+++.+|+-||+.+.+. .|++.||+|-.
T Consensus 224 ~v~~~p~~~---~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 224 KTKIFPLDR---DIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp EEEEETTTE---EEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred EEEECCCCc---EEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999888774 568899999999999999999999999875 58999999954
No 236
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.48 E-value=0.0023 Score=71.93 Aligned_cols=182 Identities=15% Similarity=0.226 Sum_probs=120.3
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCCh--hhHHHHHhcCC--EEEEec-CCCC--h--------hHHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISA--SDVDLAVASKA--IILGFN-VKAP--G--------SVKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~Ite--sDV~lA~as~a--iIl~Fn-v~~~--~--------~~~~~A~ 849 (996)
.|+-|..+-+...+..+..-++-+-++.+.-|...+ .-+.++...+- +|+..| +... . +++++++
T Consensus 71 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 377777666666666666667777777766654322 22333433332 456666 2221 1 3344555
Q ss_pred hcC-----ceEEEechHhH----------H-HHHHHHHHHccccc-ceeeeeEEeEEEEEEee-cCCceEEEEEEeeceE
Q 001915 850 NKG-----VEIRLYRVIYD----------L-IDDMRNAMEGLLET-VEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKL 911 (996)
Q Consensus 850 ~~~-----V~I~~~~IIY~----------L-iddik~~~~~~l~~-~~~e~~~G~A~V~~vF~-~~~g~IaGc~V~~G~i 911 (996)
+.+ +.++.-+-... = ++++.+++...+++ .....--..+-|..+|. ...|.|+..+|..|.|
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l 230 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGIL 230 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceE
Confidence 555 56665554432 2 55666666665543 22211123455668888 4689999999999999
Q ss_pred eeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 912 VKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 912 ~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
+.|..+.++..+.- ...+|.||..+.++|.++.+|+-||+.+.+. .|++.||+|-
T Consensus 231 ~~gd~v~~~~~~~~-~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 231 KKGDECEFLGHSKN-IRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp ETTCEEEEEETTEE-EEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred eCCCEEEEeCCCCC-eEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEe
Confidence 99999998865421 3568999999999999999999999999865 6999999985
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.41 E-value=0.00047 Score=76.27 Aligned_cols=146 Identities=22% Similarity=0.285 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cccC--C-c------eeeeceEEEEEeeC-------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAG--G-I------TQGIGAYKVQVPVD------------- 538 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~g--G-i------TqdI~a~~V~i~id------------- 538 (996)
.++..|+|+|..|+|||||+..|.+. .+.. .+.. + . ...++...+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45678999999999999999998632 1110 0000 0 0 00111111110000
Q ss_pred --CccccEEEEeCCCccc----hHHHHHH--hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCCCCCC
Q 001915 539 --GKLQPCVFLDTPGHEA----FGAMRAR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN 610 (996)
Q Consensus 539 --gk~~~ItfIDTPGhE~----F~~mr~r--ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL~~a~ 610 (996)
...+.+.++||+|... +...... .+-..|-.++++|+..+ .+..+.+..+...--..++++||+|-. +.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~-a~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDAD-AR 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGC-SC
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCc-cc
Confidence 1234578999999532 2221111 12357999999998765 234444444443222347888999963 33
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 611 PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 611 ~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
.-.+...+...+ .|+.+++ +|+++++|
T Consensus 284 ~G~~l~~~~~~~---------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVID---------APILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHT---------CCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHC---------CCEEEEe--CCCCcccc
Confidence 334444444443 4677777 88888765
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.34 E-value=0.00048 Score=81.99 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=41.6
Q ss_pred ccEEEEeCCCc-------------cchHHHHHHhhh-cCCeEEEEEecCCCCChh-HHHHHHHHHHcCCCEEEEecccCC
Q 001915 542 QPCVFLDTPGH-------------EAFGAMRARGAR-VTDIAVIVVAADDGIRPQ-TNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 542 ~~ItfIDTPGh-------------E~F~~mr~rga~-~ADiVILVVDAsdgv~~Q-t~E~I~~ak~~~IPIIVVINKiDL 606 (996)
..+.|+|.||. ..+..+...++. ...+++++++++.....+ ....+..+...+.+.|+|+||+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 35899999972 123334444443 346677777765443322 244445555567899999999998
Q ss_pred CC
Q 001915 607 DG 608 (996)
Q Consensus 607 ~~ 608 (996)
..
T Consensus 227 v~ 228 (608)
T 3szr_A 227 VD 228 (608)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 239
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.22 E-value=0.0016 Score=75.09 Aligned_cols=179 Identities=12% Similarity=0.189 Sum_probs=110.6
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC---------cCChhhHHHHHhcCC--EEEEec-CCCC-----h-----
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASKA--IILGFN-VKAP-----G----- 842 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~a--iIl~Fn-v~~~-----~----- 842 (996)
.|+-|-..-....+..+..-++-+=|+.+.-| +-|...+.++...+- +|+..| +... .
T Consensus 126 iDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~ 205 (467)
T 1r5b_A 126 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 205 (467)
T ss_dssp CCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHH
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHH
Confidence 47777765555566666667777777777766 356666666666553 677777 2221 1
Q ss_pred ---hHHhHHHhc-C------ceEEEe-----chHhHHHH----------HHHHHHHcccccceeeeeEEeEEEEEEeecC
Q 001915 843 ---SVKTYADNK-G------VEIRLY-----RVIYDLID----------DMRNAMEGLLETVEEQVPIGSAEVRAIFSSG 897 (996)
Q Consensus 843 ---~~~~~A~~~-~------V~I~~~-----~IIY~Lid----------dik~~~~~~l~~~~~e~~~G~A~V~~vF~~~ 897 (996)
++++++++. | +.++.- .-|.++++ .+.++++.+..|.....--...-|..+|+.
T Consensus 206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~~- 284 (467)
T 1r5b_A 206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKD- 284 (467)
T ss_dssp HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEES-
T ss_pred HHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEeC-
Confidence 245555555 3 334321 11222111 122344443333322111123445677764
Q ss_pred CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEcc-CCCCCCCCEEE
Q 001915 898 SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAAD-YDDLEEGDIIE 967 (996)
Q Consensus 898 ~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~-k~dV~ev~~G~ECGI~i~~-f~d~~~GD~ie 967 (996)
.|.|+..+|..|.|+.|..+.++-.+. .++|.||..+ .+++.++.+|+-|||.+.+ -.|++.||+|-
T Consensus 285 ~G~v~~G~v~~G~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl~ 353 (467)
T 1r5b_A 285 LGTILEGKIEAGSIKKNSNVLVMPINQ---TLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVLT 353 (467)
T ss_dssp SSEEEEEECCBSEEETTEEEEEETTTE---EEEEEEEECTTCCEESEEETTCEEEEEEESCCTTCCTTCEEE
T ss_pred CCeEEEEEEeeeEEeeCCEEEEccCCe---eEEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhCCceEEEe
Confidence 689999999999999999999887774 5789999988 8999999999999999996 77999999985
No 240
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.21 E-value=0.004 Score=71.17 Aligned_cols=180 Identities=12% Similarity=0.133 Sum_probs=123.8
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---------CChhhHHHHHhcCC--EEEEec-CCCC----------
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---------ISASDVDLAVASKA--IILGFN-VKAP---------- 841 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---------ItesDV~lA~as~a--iIl~Fn-v~~~---------- 841 (996)
=.|+-|-..-+...+..+..-++-+=|+.+.-|. -|...+.++...+- +|++.| +...
T Consensus 99 iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~ 178 (439)
T 3j2k_7 99 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 178 (439)
T ss_pred EEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHH
Confidence 3689998777777777777788888888888774 46666666766553 677777 2321
Q ss_pred ---hhHHhHHHhcC------ceEEEe-----chHhHHHH--------HHHHHHHcccccceeeeeEEeEEEEEEeecCCc
Q 001915 842 ---GSVKTYADNKG------VEIRLY-----RVIYDLID--------DMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSG 899 (996)
Q Consensus 842 ---~~~~~~A~~~~------V~I~~~-----~IIY~Lid--------dik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~g 899 (996)
.++.+++++.| +.++.- .-|.+|.+ .+.++++.+.+|.....---+.-|..+|+ ..|
T Consensus 179 ~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~-~~G 257 (439)
T 3j2k_7 179 ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK-DMG 257 (439)
T ss_pred HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc-CCC
Confidence 12233444444 334322 22334333 14455555444433222112334456776 578
Q ss_pred eEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEEE
Q 001915 900 RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDIIE 967 (996)
Q Consensus 900 ~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~ie 967 (996)
.|+..+|..|.|+.|..+.+...|. ..+|.||..++++|.++.+|+-||+.+.+.+ |++-||+|-
T Consensus 258 ~v~~G~v~~G~l~~Gd~v~~~p~~~---~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~ 324 (439)
T 3j2k_7 258 TVVLGKLESGSIFKGQQLVMMPNKH---NVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILC 324 (439)
T ss_pred eEEEEEEEeeEEecCCEEEEccCCc---eEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEec
Confidence 9999999999999999999988774 5789999999999999999999999999654 888899884
No 241
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.11 E-value=0.0018 Score=73.62 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=114.4
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCcC--ChhhHHHHHhcC--CEEEEec-CCCCh-----------hHHhHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDI--SASDVDLAVASK--AIILGFN-VKAPG-----------SVKTYA 848 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~I--tesDV~lA~as~--aiIl~Fn-v~~~~-----------~~~~~A 848 (996)
.|+-|-.+-....+..+..-++-+-|+.+.-|.. +...+.++...+ -+|+..| +.... ++++++
T Consensus 109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~ 188 (434)
T 1zun_B 109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFA 188 (434)
T ss_dssp EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence 4777765444455555666777777777766643 223344454444 2677777 22211 123344
Q ss_pred HhcC-----ceEEEec-----hHhHHHHH--------HHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeec
Q 001915 849 DNKG-----VEIRLYR-----VIYDLIDD--------MRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEG 909 (996)
Q Consensus 849 ~~~~-----V~I~~~~-----IIY~Lidd--------ik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G 909 (996)
++.+ +.++.-+ -|-++++. +.++++.+..|.....---.+-|..+|+. ..+..++.+|.+|
T Consensus 189 ~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G 268 (434)
T 1zun_B 189 EGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGFAGTLASG 268 (434)
T ss_dssp HTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCEEEEECCBS
T ss_pred HHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceEEEEEEecc
Confidence 5566 5555433 12221111 22344443333322211123445578764 3566777899999
Q ss_pred eEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 910 KLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 910 ~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
.|+.|..+.++-.|. .++|.||..+..+|+++.+|+-||+.+.+-.+++.||+|-.
T Consensus 269 ~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~ 324 (434)
T 1zun_B 269 IVHKGDEIVVLPSGK---SSRVKSIVTFEGELEQAGPGQAVTLTMEDEIDISRGDLLVH 324 (434)
T ss_dssp CEETTCEEEETTTCC---EEEEEEEEETTEEESEECTTCEEEEEESSCCCCCTTCEEEE
T ss_pred eEeCCCEEEEecCCe---EEEEEEEEEcCcceeEecCCCEEEEEeCCccccCCccEEEC
Confidence 999999999987774 67999999999999999999999999998778999999853
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.07 E-value=0.0043 Score=72.45 Aligned_cols=145 Identities=20% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cccCCc-----------eeeeceEEEEEee------------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAGGI-----------TQGIGAYKVQVPV------------ 537 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~gGi-----------TqdI~a~~V~i~i------------ 537 (996)
.++-+|+|+|..|+|||||+..|.+. .+.. ...... -.+++++.-....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 45668999999999999999988632 1111 110000 0111111100000
Q ss_pred -CCccccEEEEeCCCccchHH--H-----HHHhh-----hcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEecc
Q 001915 538 -DGKLQPCVFLDTPGHEAFGA--M-----RARGA-----RVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINK 603 (996)
Q Consensus 538 -dgk~~~ItfIDTPGhE~F~~--m-----r~rga-----~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IPIIVVINK 603 (996)
...++.+.|+||+|...... | +.+.+ ...+-++||+|+..+. .....++.+.. .++. .+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~it-gvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLT-GITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCS-EEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCC-EEEEEc
Confidence 01345689999999532211 1 11111 1256789999988652 22333444433 3444 568999
Q ss_pred cCCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 604 IDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 604 iDL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+|-. ...-.+...+...+ .|+.++ -+|+++++|
T Consensus 448 LD~t-akgG~~lsi~~~~~---------~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 448 LDGT-AKGGVIFSVADQFG---------IPIRYI--GVGERIEDL 480 (503)
T ss_dssp GGGC-SCCTHHHHHHHHHC---------CCEEEE--ECSSSGGGE
T ss_pred CCCc-ccccHHHHHHHHHC---------CCEEEE--ecCCChhhc
Confidence 9962 23333444444433 355553 467778775
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.06 E-value=0.00072 Score=77.54 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=39.5
Q ss_pred cccEEEEeCCCccchH-HHH----H-HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCC
Q 001915 541 LQPCVFLDTPGHEAFG-AMR----A-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~-~mr----~-rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL 606 (996)
.+.+.|+||||.-.+. .++ . ..+..+|.++||+|+..+. .....+..+.. .++ .-|++||+|.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCC
Confidence 5679999999954431 111 1 2245789999999998652 22333333332 355 3478999996
No 244
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.02 E-value=0.0043 Score=70.65 Aligned_cols=180 Identities=18% Similarity=0.264 Sum_probs=114.3
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC-------c--CChhhHHHHHhcC--CEEEEec-CCC-C----------
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG-------D--ISASDVDLAVASK--AIILGFN-VKA-P---------- 841 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG-------~--ItesDV~lA~as~--aiIl~Fn-v~~-~---------- 841 (996)
.|+-|..+-....+..+..-++-+-|+.+.-| . -+..-..++...+ .+|+..| +.. +
T Consensus 89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 168 (435)
T 1jny_A 89 IDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE 168 (435)
T ss_dssp CCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred EECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence 47777666666666666666676666666555 1 1222233333333 3566666 221 1
Q ss_pred --hhHHhHHHhcC-----ceEEEech-----HhHHHH--------HHHHHHHcccccceeeeeEEeEEEEEEeec-CCce
Q 001915 842 --GSVKTYADNKG-----VEIRLYRV-----IYDLID--------DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGR 900 (996)
Q Consensus 842 --~~~~~~A~~~~-----V~I~~~~I-----IY~Lid--------dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~ 900 (996)
.+++++++..+ +.++.-+- |-++.+ .+.+++..+.+|.....--.+.-|..+|.. ..|.
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~~~G~ 248 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGT 248 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEeCCCcE
Confidence 12344555544 44443221 111111 233345554445432111123457789985 6799
Q ss_pred EEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEcc--CCCCCCCCEEE
Q 001915 901 VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD--YDDLEEGDIIE 967 (996)
Q Consensus 901 IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~--f~d~~~GD~ie 967 (996)
++..+|..|.|+.|..+.+...|. ..+|.||..+.++|.++.+|+-|||.+.+ ..|++.||+|-
T Consensus 249 v~~g~v~~G~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 249 VPVGRVESGVLKVGDKIVFMPAGK---VGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp EEEEECCBSCEETTCEEEEETTTE---EEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEE
T ss_pred EEEEEEecCeEEcCCEEEECCcee---EEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEec
Confidence 999999999999999999888774 57889999999999999999999999986 46899999985
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.97 E-value=0.0088 Score=65.37 Aligned_cols=144 Identities=21% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cc---cCCc--------eeeeceEEEEEe----------e---
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AE---AGGI--------TQGIGAYKVQVP----------V--- 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se---~gGi--------TqdI~a~~V~i~----------i--- 537 (996)
++-.|+|+|+.|+|||||++.|.+. ++.. .+ .... ..++++..-... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998621 1110 00 0000 011211110000 0
Q ss_pred CCccccEEEEeCCCccchH--------HHHH---Hh-hhcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEeccc
Q 001915 538 DGKLQPCVFLDTPGHEAFG--------AMRA---RG-ARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKI 604 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~--------~mr~---rg-a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IPIIVVINKi 604 (996)
....+.+.++||+|..... ..+. +. ....+.++|++|+..+. ...+.+..+.. .++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cEEEEECC
Confidence 0012457899999943211 1111 11 23578889999987653 23334444333 344 56789999
Q ss_pred CCCCCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 605 DL~~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
|-. +..-.+.......+ .|+.+++ +|+++++|
T Consensus 258 d~~-a~gg~~l~i~~~~~---------~pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 258 DGT-AKGGVLIPIVRTLK---------VPIKFVG--VGEGPDDL 289 (304)
T ss_dssp TSS-CCCTTHHHHHHHHC---------CCEEEEE--CSSSTTCE
T ss_pred ccc-ccccHHHHHHHHHC---------CCeEEEe--CCCChhhc
Confidence 863 22333333333333 4566655 56667664
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.97 E-value=0.0084 Score=66.00 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=51.4
Q ss_pred cccEEEEeCCCccchHH--HHH-----Hh-----hhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGA--MRA-----RG-----ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~--mr~-----rg-----a~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~ 607 (996)
.+.+.|+||||.-.... |.. +. ...+|.++||+|+..+ ......+..+. ...+ .=+++||+|..
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDST 267 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCCC
Confidence 56899999999544321 111 01 1347999999999853 22333332222 1234 34789999963
Q ss_pred CCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 608 GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 608 ~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
. ....+.......+ .|+.++. .|+++++|
T Consensus 268 ~-~~g~~~~~~~~~~---------~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 268 S-KGGIGLAIKELLN---------IPIKMIG--VGEKVDDL 296 (320)
T ss_dssp S-CTTHHHHHHHHHC---------CCEEEEE--CSSSTTCE
T ss_pred C-chhHHHHHHHHHC---------cCEEEEe--CCCCcccc
Confidence 2 2234444444443 4555553 56677664
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.96 E-value=0.00048 Score=75.72 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=55.9
Q ss_pred hhhcCCeEEEEEecCCCCChhH--HHHHHHHHHcCCCEEEEecccCCCCCCh-----hHHHHHHHhcCCCCCCCCCCCcE
Q 001915 562 GARVTDIAVIVVAADDGIRPQT--NEAIAHAKAAGVPIVIAINKIDKDGANP-----ERVMQELSSIGLMPEDWGGDIPM 634 (996)
Q Consensus 562 ga~~ADiVILVVDAsdgv~~Qt--~E~I~~ak~~~IPIIVVINKiDL~~a~~-----erv~~eL~~~gl~~e~~gg~ipv 634 (996)
.+.++|.+++|+|+.++..... ...+..+...++|.++|+||+||..... +.+...+...+ +++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g---------~~v 153 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---------YDV 153 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---------CCE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---------CeE
Confidence 5789999999999987554433 2223334457899999999999965322 12222222222 479
Q ss_pred EEeccCCCCChhhHHHH
Q 001915 635 VQISALKGEKVDDLLET 651 (996)
Q Consensus 635 VeISAktGeGIdEL~ea 651 (996)
+.+||++|.|+++|++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999999988754
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.94 E-value=0.0077 Score=65.50 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
..++.+|+|+|..|+||||++..|.
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3467799999999999999999875
No 249
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.92 E-value=0.018 Score=64.84 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=111.3
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---CChhhHHHHHhcC--CEEEEec-CCCCh---------hHHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFN-VKAPG---------SVKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIl~Fn-v~~~~---------~~~~~A~ 849 (996)
-|+-|-..-....+..+..-++-+-|+.+.-|. -|...+.++...+ -+|+..| +.... +++++++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 377776655566666666666777677666553 2333344444333 3677777 22211 1233443
Q ss_pred h---cCceEEEechHh-HHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeecC---------CceEEEEEEeeceEeeCC
Q 001915 850 N---KGVEIRLYRVIY-DLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 915 (996)
Q Consensus 850 ~---~~V~I~~~~IIY-~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 915 (996)
. .++.++.-+-.. +=++++.+++...++ |.....---..-|..+|..+ .|.|+..+|..|.|+.|.
T Consensus 166 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd 245 (408)
T 1s0u_A 166 GTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGD 245 (408)
T ss_dssp TSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTC
T ss_pred hcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCC
Confidence 3 356665433221 113444444544333 22221112345577888642 477888899999999999
Q ss_pred cEEEeeC------CEEEE---EEEEeeeecccccccccccCceeEEEEc---c--CCCCCCCCEEE
Q 001915 916 GIRVIRD------GKTVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---D--YDDLEEGDIIE 967 (996)
Q Consensus 916 ~vrviR~------g~vi~---~G~I~SLk~~k~dV~ev~~G~ECGI~i~---~--f~d~~~GD~ie 967 (996)
.+.++-. |...| ..+|.||..++++|+++.+|+-|||.+. + -.|++.||+|-
T Consensus 246 ~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 246 EIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp EEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred EEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 9988753 32222 5799999999999999999999999886 2 24889998874
No 250
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.91 E-value=0.0021 Score=74.14 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC---------------Ccccccc----CCceeeeceEEEEE--e-eCCccccEEEEe
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT---------------KVAAAEA----GGITQGIGAYKVQV--P-VDGKLQPCVFLD 548 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s---------------~va~se~----gGiTqdI~a~~V~i--~-idgk~~~ItfID 548 (996)
-.+|+|+|.+++|||||||+|.+. ....... ...|.+|-.+...+ . .++....+.|+|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 357999999999999999999853 1111111 22355543332111 1 134456899999
Q ss_pred CCCccchH-------HHHHHhhhcCCeEEEEEecCCCCChhHHHHHHH
Q 001915 549 TPGHEAFG-------AMRARGARVTDIAVIVVAADDGIRPQTNEAIAH 589 (996)
Q Consensus 549 TPGhE~F~-------~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ 589 (996)
|||...-. .+.....-.+++.|+- ....+.....+.+..
T Consensus 147 TeG~~~~~~~~~~d~~ifal~~lLSs~~IyN--~~~~i~~~~l~~L~~ 192 (447)
T 3q5d_A 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYN--LSQNVQEDDLQHLQL 192 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHCSEEEEE--ESSSCCHHHHHHHHH
T ss_pred CCcccccccchhhhHHHHHHHHHHhhHHHHh--hcccccHHHHHHHHH
Confidence 99942211 1112222346655544 445566666655544
No 251
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.91 E-value=0.016 Score=65.22 Aligned_cols=178 Identities=18% Similarity=0.186 Sum_probs=111.1
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccCc---CChhhHHHHHhcC--CEEEEec-CCC-Ch--------hHHhHHHh
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFN-VKA-PG--------SVKTYADN 850 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIl~Fn-v~~-~~--------~~~~~A~~ 850 (996)
|+-|...-+...+..+..-++-+-|+.+.-|. -|..-+.++...+ -+|+..| +.. .. +++++++.
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG 168 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 77776665666666666566666666666553 2333333443333 4667776 222 11 12233332
Q ss_pred ---cCceEEEech-----HhHHHHHHHHHHHcccc-cceeeeeEEeEEEEEEeecC---------CceEEEEEEeeceEe
Q 001915 851 ---KGVEIRLYRV-----IYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLV 912 (996)
Q Consensus 851 ---~~V~I~~~~I-----IY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~ 912 (996)
.++.++.-+- |-+|++.+ ...++ |.....--..+-|..+|..+ .|.|+..+|.+|.|+
T Consensus 169 ~~~~~~~~i~vSA~~g~gi~~L~~~l----~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 244 (410)
T 1kk1_A 169 TVAENAPIIPISALHGANIDVLVKAI----EDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLK 244 (410)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHH----HHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEE
T ss_pred cCcCCCeEEEeeCCCCCCHHHHHHHH----HHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEe
Confidence 3566665432 34454444 44333 32221112345677788642 477899999999999
Q ss_pred eCCcEEEee------CCEEEE---EEEEeeeecccccccccccCceeEEEEcc---C--CCCCCCCEEE
Q 001915 913 KGCGIRVIR------DGKTVH---VGVLDSLRRVKENVKEVNAGLECGVGAAD---Y--DDLEEGDIIE 967 (996)
Q Consensus 913 ~~~~vrviR------~g~vi~---~G~I~SLk~~k~dV~ev~~G~ECGI~i~~---f--~d~~~GD~ie 967 (996)
.|..+.++. +|...| .++|.||..+.++|+++.+|+-||+.+.. . .|+..||+|-
T Consensus 245 ~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 245 VGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred eCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 999998874 344343 58999999999999999999999999862 2 5888998874
No 252
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.80 E-value=0.014 Score=74.19 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=125.6
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCcCCh--hhHHHHHhcCC--EEEEec-CCCC--h--------hHHhHHH
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISA--SDVDLAVASKA--IILGFN-VKAP--G--------SVKTYAD 849 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~Ite--sDV~lA~as~a--iIl~Fn-v~~~--~--------~~~~~A~ 849 (996)
.|+-|-.+-+...+..+..-++-+=|+.+.-|...+ .-+.++...+- +|+..| +... . +++++++
T Consensus 364 IDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp EECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 499998887778888888888888888877664332 23344444442 567777 3322 1 2334555
Q ss_pred hcC-----ceEEEechH---------hHHHHHHHHHHHccccc-ceeeeeEEeEEEEEEee-cCCceEEEEEEeeceEee
Q 001915 850 NKG-----VEIRLYRVI---------YDLIDDMRNAMEGLLET-VEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVK 913 (996)
Q Consensus 850 ~~~-----V~I~~~~II---------Y~Liddik~~~~~~l~~-~~~e~~~G~A~V~~vF~-~~~g~IaGc~V~~G~i~~ 913 (996)
+.| +.++.-+-. |+=++++.+++...+++ .....---.+-|..+|. ...|.|+..+|..|.|+.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkv 523 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEET
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEec
Confidence 555 456543322 33456666666665543 22211112445668898 468999999999999999
Q ss_pred CCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001915 914 GCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 967 (996)
Q Consensus 914 ~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie 967 (996)
|..+.+.-.+.. ...+|.||..+.++|.++.+|+-||+.+.+. .|++.||+|-
T Consensus 524 GD~V~I~ps~~~-~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 524 GEEVEIVGIKET-QKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp TCEEEEESSSSC-EEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred CCEEEEecCCCc-eeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 999998865421 3468999999999999999999999999976 6999999984
No 253
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.73 E-value=0.025 Score=65.17 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=112.0
Q ss_pred EecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---------CChhhHHHHHhcC--CEEEEecC-CCCh---------
Q 001915 784 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---------ISASDVDLAVASK--AIILGFNV-KAPG--------- 842 (996)
Q Consensus 784 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---------ItesDV~lA~as~--aiIl~Fnv-~~~~--------- 842 (996)
=.|+-|--+-+...+..+..-++-+-|+.+.-|. -+..-+.++...+ -+|+..|= ....
T Consensus 115 iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 194 (483)
T 3p26_A 115 IVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEI 194 (483)
T ss_dssp EECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHH
Confidence 3577777665666666666777777777776652 2333344444444 36777772 2211
Q ss_pred --hHHhHHHhc-----CceEEEec-----------------------hHhHHHHHHHHHHHcccccceeeeeEEeEEEEE
Q 001915 843 --SVKTYADNK-----GVEIRLYR-----------------------VIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRA 892 (996)
Q Consensus 843 --~~~~~A~~~-----~V~I~~~~-----------------------IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~ 892 (996)
.+.+++++. ++.++.-+ -+.++++.+-..+... +|.....---+.-|..
T Consensus 195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~-~p~~~~~~p~r~~v~~ 273 (483)
T 3p26_A 195 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKE-NEGINKDDPFLFSVLE 273 (483)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHH-HTTCCSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccc-cccccCCCceEEEEEE
Confidence 111122222 34443321 1334444443322211 1111111122455678
Q ss_pred EeecC----CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccc--------ccccccccCceeEEEEccC--C
Q 001915 893 IFSSG----SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK--------ENVKEVNAGLECGVGAADY--D 958 (996)
Q Consensus 893 vF~~~----~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k--------~dV~ev~~G~ECGI~i~~f--~ 958 (996)
+|+.. .|.|+..+|..|.|+.|..+.++..|. ..+|.||..+. .+|.++.+|+-|||.+.+. .
T Consensus 274 v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~ 350 (483)
T 3p26_A 274 IIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ---SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE 350 (483)
T ss_dssp EEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE---EEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGG
T ss_pred EEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC---eEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccc
Confidence 89853 689999999999999999999998885 57899999884 8999999999999999886 6
Q ss_pred CCCCCCEEE
Q 001915 959 DLEEGDIIE 967 (996)
Q Consensus 959 d~~~GD~ie 967 (996)
|++.||+|-
T Consensus 351 di~rG~vl~ 359 (483)
T 3p26_A 351 DIQNGDLAA 359 (483)
T ss_dssp GCCTTCEEE
T ss_pred cCCceEEEE
Confidence 999999985
No 254
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.73 E-value=0.022 Score=62.32 Aligned_cols=93 Identities=26% Similarity=0.326 Sum_probs=50.8
Q ss_pred cccEEEEeCCCccchHH-----HH--HHhh-----hcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGA-----MR--ARGA-----RVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~-----mr--~rga-----~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IPIIVVINKiDL~ 607 (996)
.+.+.|+||||...... +. .+.+ ...|.++||+|+..+ ......+..+.. .++ .-+++||+|-.
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i-~gvVlTk~D~~ 262 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNV-TGIILTKLDGT 262 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCC-CEEEEECGGGC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCC-CEEEEeCCCCc
Confidence 35699999999532221 11 1111 247899999999732 222233333332 232 34667999963
Q ss_pred CCChhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 608 GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 608 ~a~~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
...-.+.......+ .|+.+++ .|+++++|
T Consensus 263 -~~gG~~l~~~~~~~---------~Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 263 -AKGGITLAIARELG---------IPIKFIG--VGEKAEDL 291 (306)
T ss_dssp -SCTTHHHHHHHHHC---------CCEEEEE--CSSSGGGE
T ss_pred -cchHHHHHHHHHHC---------CCEEEEe--CCCChhhc
Confidence 23334555555543 4666664 45667665
No 255
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=96.62 E-value=0.0056 Score=63.27 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=66.7
Q ss_pred EEEEEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEE
Q 001915 889 EVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDII 966 (996)
Q Consensus 889 ~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~i 966 (996)
-|..+|+ ..|.|..-+|..|.|+.|..+.++-.| ...+|.||..+.+++.++.+|+-|||.+.+. .|+..||+|
T Consensus 10 ~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~---~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG~vl 85 (204)
T 3e1y_E 10 PIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNK---HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFIL 85 (204)
T ss_dssp EEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTT---EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTTCEE
T ss_pred EEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCC---CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccceEE
Confidence 4567888 689999999999999999999998777 4689999999999999999999999999965 589999998
Q ss_pred E
Q 001915 967 E 967 (996)
Q Consensus 967 e 967 (996)
-
T Consensus 86 ~ 86 (204)
T 3e1y_E 86 C 86 (204)
T ss_dssp B
T ss_pred E
Confidence 4
No 256
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.57 E-value=0.012 Score=58.45 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc-----CCCEEEEecccCCCCCChhHHH
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-----GVPIVIAINKIDKDGANPERVM 615 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~-----~IPIIVVINKiDL~~a~~erv~ 615 (996)
.+.+.|+|||+.. .......+..+|.+|+++..+... ......+..+... +.++.+++|++|........+.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~ 151 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLK 151 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHH
Confidence 4789999999865 334445567899999999988766 6667777777654 3578999999996433334555
Q ss_pred HHHHhcC
Q 001915 616 QELSSIG 622 (996)
Q Consensus 616 ~eL~~~g 622 (996)
+.+..++
T Consensus 152 ~~l~~~~ 158 (206)
T 4dzz_A 152 ESIKDTG 158 (206)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 5555544
No 257
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.50 E-value=0.0083 Score=71.28 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=75.0
Q ss_pred HHcccccceeeeeEEeEEEEEEeecCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccccccc-ccccCcee
Q 001915 872 MEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVK-EVNAGLEC 950 (996)
Q Consensus 872 ~~~~l~~~~~e~~~G~A~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~-ev~~G~EC 950 (996)
+..+++|.....---..-|..+|+...|.++..+|..|.|+.|..+.++..|. ..+|.||..+.++|. ++.+|+-|
T Consensus 391 l~~~~pp~~~~~~p~r~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~---~~~V~~i~~~~~~~~~~a~aG~~v 467 (592)
T 3mca_A 391 LDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQE---DAYVKNVIRNSDPSSTWAVAGDTV 467 (592)
T ss_dssp HHTSCCCSCTTTSCCEEEEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTE---EEEEEEEECSSSCSCCEEETTCEE
T ss_pred HHhhccccccccccchheeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCc---eEEEEEEEEcCccCcceecCCCEE
Confidence 34445543322222345677888877789999999999999999999988885 578999999999999 99999999
Q ss_pred EEEEccCC--CCCCCCEEE
Q 001915 951 GVGAADYD--DLEEGDIIE 967 (996)
Q Consensus 951 GI~i~~f~--d~~~GD~ie 967 (996)
||.+.+.+ |++.||+|-
T Consensus 468 ~~~l~~i~~~~i~rG~vl~ 486 (592)
T 3mca_A 468 TLQLADIEVNQLRPGDILS 486 (592)
T ss_dssp EEEESSSCGGGCCTTCEEE
T ss_pred EEEEccccccccceEEEec
Confidence 99999854 899999985
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.47 E-value=0.01 Score=67.94 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC------Cccc--cccCC---c--------eeeeceEEEEE-----e--------e
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAGG---I--------TQGIGAYKVQV-----P--------V 537 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s------~va~--se~gG---i--------TqdI~a~~V~i-----~--------i 537 (996)
++.+|+++|..|+||||++..|... ++.. .+... . ..++..+.... . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 5567999999999999999887521 1110 00000 0 00111111100 0 0
Q ss_pred CCccccEEEEeCCCccchH-HHHH-----HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCC
Q 001915 538 DGKLQPCVFLDTPGHEAFG-AMRA-----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (996)
Q Consensus 538 dgk~~~ItfIDTPGhE~F~-~mr~-----rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~ 610 (996)
....+.+.|+||||.-... .+.. ..+..+|.++||+|+..+ ......+..+.. .++ .-|++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 0134679999999953321 1111 123468999999999754 222333333332 244 567899999732 2
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 611 PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 611 ~erv~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
...+.......+ .|+.++. .|+.+++|
T Consensus 253 ~g~alsi~~~~g---------~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 253 GGAALSARHVTG---------KPIYFAG--VSEKPEGL 279 (425)
T ss_dssp CHHHHHHHHHHC---------CCEEEEE--CSSSGGGE
T ss_pred HHHHHHHHHHHC---------CCEEEEe--CCCChhhc
Confidence 223333333333 3555554 45556654
No 259
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.39 E-value=0.016 Score=66.57 Aligned_cols=181 Identities=13% Similarity=0.237 Sum_probs=121.0
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCc---------CChhhHHHHHhcCC--EEEEec-CCCC---h-------
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---------ISASDVDLAVASKA--IILGFN-VKAP---G------- 842 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---------ItesDV~lA~as~a--iIl~Fn-v~~~---~------- 842 (996)
.|+-|-.+-....+..+..-++-+-|+.+.-|. -+..-+.++...+. +|+..| +... .
T Consensus 90 iDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~ 169 (458)
T 1f60_A 90 IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV 169 (458)
T ss_dssp EECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHH
T ss_pred EECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHH
Confidence 488887666777777777778888777776553 24444555555553 677777 2221 1
Q ss_pred -hHHhHHHhcC-----ceEEEec------h--------HhH----------H-HHHHHHHHHcccccceeeeeEEeEEEE
Q 001915 843 -SVKTYADNKG-----VEIRLYR------V--------IYD----------L-IDDMRNAMEGLLETVEEQVPIGSAEVR 891 (996)
Q Consensus 843 -~~~~~A~~~~-----V~I~~~~------I--------IY~----------L-iddik~~~~~~l~~~~~e~~~G~A~V~ 891 (996)
+++++++..+ +.++.-+ + .|+ + .+.+.+++..+.+|.....---+.-|.
T Consensus 170 ~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p~r~~i~ 249 (458)
T 1f60_A 170 KETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQ 249 (458)
T ss_dssp HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSCCEEEEE
T ss_pred HHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCCCCcEEEEE
Confidence 1333444444 3444321 1 121 0 012333444444454332222355677
Q ss_pred EEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001915 892 AIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 968 (996)
Q Consensus 892 ~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f--~d~~~GD~ie~ 968 (996)
.+|+. +.|.|+..+|..|.++.|..+.++-.+. ..+|.||+.+.+++.++.+|+-|||.+.+. .|++.||+|-.
T Consensus 250 ~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~---~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 250 DVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV---TTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp EEEEETTTEEEEEEECCBSCBCTTCEEEEETTTE---EEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred EEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCc---eEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 99984 6799999999999999999999887774 568999999999999999999999999875 69999999853
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.27 E-value=0.0073 Score=67.75 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=51.0
Q ss_pred hhcCCeEEEEEecCCCCChhHH-HHHHHHHHcCCCEEEEecccCCCCCCh-hHHHHHHHhcCCCCCCCCCCCcEEEeccC
Q 001915 563 ARVTDIAVIVVAADDGIRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (996)
Q Consensus 563 a~~ADiVILVVDAsdgv~~Qt~-E~I~~ak~~~IPIIVVINKiDL~~a~~-erv~~eL~~~gl~~e~~gg~ipvVeISAk 640 (996)
+.++|.+++|.+..-....... ..+..+...++|.|+|+||+||..... +.+...+..+. .+ .++++.+||.
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~----~~--G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR----NI--GYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH----TT--TCCEEECBTT
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH----hC--CCcEEEEecC
Confidence 5889999987654322222222 222334557899999999999964221 11222222211 11 2579999999
Q ss_pred CCCChhhHHHH
Q 001915 641 KGEKVDDLLET 651 (996)
Q Consensus 641 tGeGIdEL~ea 651 (996)
+|.|+++|...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999988764
No 261
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.03 Score=66.81 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=118.7
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccC---------cCChhhHHHHHhcC--CEEEEec-CCCCh----------
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASK--AIILGFN-VKAPG---------- 842 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~--aiIl~Fn-v~~~~---------- 842 (996)
.|+-|.-.-+...+..+..-++-+-|+.+.-| +-+...+.++...+ -+|++.| +....
T Consensus 250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~ 329 (611)
T 3izq_1 250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK 329 (611)
T ss_dssp EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHH
T ss_pred EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHH
Confidence 58888766677777777778888888887765 34555555665554 3778887 23221
Q ss_pred -hHHhHHHhc-----CceEEEec-----hHhHHHH-----------HHHHHHHccccc------ceeeeeEEeEEEEEEe
Q 001915 843 -SVKTYADNK-----GVEIRLYR-----VIYDLID-----------DMRNAMEGLLET------VEEQVPIGSAEVRAIF 894 (996)
Q Consensus 843 -~~~~~A~~~-----~V~I~~~~-----IIY~Lid-----------dik~~~~~~l~~------~~~e~~~G~A~V~~vF 894 (996)
.+..++++. ++.++.-+ -|-+|.+ .+.++|..+.+. .....---+.-|..+|
T Consensus 330 ~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~v~ 409 (611)
T 3izq_1 330 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEII 409 (611)
T ss_dssp HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCEEE
T ss_pred HHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheeeee
Confidence 122223322 34554322 1222211 244445544221 1111111244466889
Q ss_pred ecC----CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc--------cccccccccCceeEEEEccC--CCC
Q 001915 895 SSG----SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV--------KENVKEVNAGLECGVGAADY--DDL 960 (996)
Q Consensus 895 ~~~----~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~--------k~dV~ev~~G~ECGI~i~~f--~d~ 960 (996)
+.+ .|.|+..+|..|.|+.|..+.++..|. ..+|.||..+ +.+|.++.+|+-|||.+.+. .|+
T Consensus 410 ~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~---~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di 486 (611)
T 3izq_1 410 PSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ---SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDI 486 (611)
T ss_dssp CCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE---EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSC
T ss_pred ccCccCCCeeEEEEEEEeceeccCCEEEEecCCc---eEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhC
Confidence 854 688999999999999999999998885 4689999888 48999999999999999986 699
Q ss_pred CCCCEEE
Q 001915 961 EEGDIIE 967 (996)
Q Consensus 961 ~~GD~ie 967 (996)
..||+|-
T Consensus 487 ~rGdvl~ 493 (611)
T 3izq_1 487 QNGDLAA 493 (611)
T ss_dssp CTTCEEB
T ss_pred cceEEcc
Confidence 9999984
No 262
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.012 Score=63.84 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=48.3
Q ss_pred cccEEEEeCCCccch--HHHHH----HhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCCCCChhH
Q 001915 541 LQPCVFLDTPGHEAF--GAMRA----RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER 613 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F--~~mr~----rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~~a~~er 613 (996)
.+.+.|+||||.... ..+.. ...-.+|.+++|+|+..+ ....+.++.... ..+ .-+++||+|... ....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g~ 255 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGGA 255 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHHH
Confidence 467999999985322 21211 112358999999998743 223333333332 244 457899999743 3334
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEeccCCCCChhhH
Q 001915 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (996)
Q Consensus 614 v~~eL~~~gl~~e~~gg~ipvVeISAktGeGIdEL 648 (996)
+.......+ .|+.+++ +|+++++|
T Consensus 256 ~~~~~~~~~---------~pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 256 ALSARHVTG---------KPIYFAG--VSEKPEGL 279 (295)
T ss_dssp HHHHHHHHC---------CCEEEEC--------CC
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCcccc
Confidence 444444433 4666655 45666554
No 263
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.89 E-value=0.024 Score=63.74 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=65.4
Q ss_pred eEEEEEEeecC---------CceEEEEEEeeceEeeCCcEEEeeCCEE------EE---EEEEeeeecccccccccccCc
Q 001915 887 SAEVRAIFSSG---------SGRVAGCMVSEGKLVKGCGIRVIRDGKT------VH---VGVLDSLRRVKENVKEVNAGL 948 (996)
Q Consensus 887 ~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~~vrviR~g~v------i~---~G~I~SLk~~k~dV~ev~~G~ 948 (996)
..-|..+|... .|.|+..+|..|.++.|..+.+...+.+ .| ..+|.||..+.++|.++.+|+
T Consensus 202 ~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 202 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 44566778642 5889999999999999999988765432 22 579999999999999999999
Q ss_pred eeEEEEc---c--CCCCCCCCEEE
Q 001915 949 ECGVGAA---D--YDDLEEGDIIE 967 (996)
Q Consensus 949 ECGI~i~---~--f~d~~~GD~ie 967 (996)
-|||.+. + -.|+..||++-
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEE
T ss_pred EEEEEeccccccchhhhccccEEe
Confidence 9999985 2 25899999874
No 264
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.81 E-value=0.047 Score=55.65 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=53.6
Q ss_pred ccccEEEEeCCCc-cchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEecccCCCC-CChhHHHH
Q 001915 540 KLQPCVFLDTPGH-EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKDG-ANPERVMQ 616 (996)
Q Consensus 540 k~~~ItfIDTPGh-E~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~-~~IPIIVVINKiDL~~-a~~erv~~ 616 (996)
..+.+.|+|||+. ... .....+..+|.+|+++..+..........++.+.. .+.++.+++|++|... .....+.+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 3467999999986 432 23345678999999998765434444555566665 3678999999999754 33344555
Q ss_pred HHHhcC
Q 001915 617 ELSSIG 622 (996)
Q Consensus 617 eL~~~g 622 (996)
.+...+
T Consensus 144 ~l~~~g 149 (209)
T 3cwq_A 144 LLTTAG 149 (209)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 555443
No 265
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.71 E-value=0.0025 Score=73.25 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccch--HHHH-------
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF--GAMR------- 559 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F--~~mr------- 559 (996)
..+.+|+++|.+|+||||+..+|....... ..-|..+..-.+.....+......|||+.|.+.| ...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~---~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI---GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc---CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999987532110 0012111000000001111123467899997443 2222
Q ss_pred -HHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 560 -ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 560 -~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
..++..+++.++|+|+++....+-..++..++..+.+++++-..++
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 3344557888999999886444444445556666766665544444
No 266
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=95.04 E-value=0.024 Score=65.65 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=116.7
Q ss_pred ecccchHHHHHHHHHhCCCCCeeEEEEEcccCc--CChhhHHHHHhcC-CEEEEec-CCCCh---------hHHhHHHhc
Q 001915 785 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD--ISASDVDLAVASK-AIILGFN-VKAPG---------SVKTYADNK 851 (996)
Q Consensus 785 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~--ItesDV~lA~as~-aiIl~Fn-v~~~~---------~~~~~A~~~ 851 (996)
.|+-|-.+-+...+..+..-++-+-|+.+.-|. -|...+.++...+ -+|+..| +.... +++++++..
T Consensus 78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 488887666677777777778888777776553 3444455554433 3466777 33221 122333333
Q ss_pred ----CceEEEec-----hHhHHHHHHHHHHHccccc-ceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEe
Q 001915 852 ----GVEIRLYR-----VIYDLIDDMRNAMEGLLET-VEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVI 920 (996)
Q Consensus 852 ----~V~I~~~~-----IIY~Liddik~~~~~~l~~-~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrvi 920 (996)
++.++.-+ -|-+|++.+.+.+. ++. .....---..-|..+|.. +.|.|+..+|..|.|+.|..+.++
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~--~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~ 235 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITTLN--NAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVL 235 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH--HSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCT
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHhhc--CccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEEC
Confidence 45555433 35566666666554 110 111110012234578874 578999899999999999998887
Q ss_pred eCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEE
Q 001915 921 RDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDII 966 (996)
Q Consensus 921 R~g~vi~~G~I~SLk~~k~dV~ev~~G~ECGI~i~~f~--d~~~GD~i 966 (996)
-.+. ..+|.+|..+.++|+++.+|+-||+.+.+.+ +++.||+|
T Consensus 236 p~~~---~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 236 PINM---STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp TTCC---CEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred CCCc---EEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 6553 4589999999999999999999999998864 79999999
No 267
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.75 E-value=0.079 Score=57.45 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~ 512 (996)
...++++|++|+|||||+|.|.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 268
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.58 E-value=0.097 Score=60.57 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=57.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc------------------CCcccc-ccCCceeeeceEEEEEe---eCCccccEEEEeC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK------------------TKVAAA-EAGGITQGIGAYKVQVP---VDGKLQPCVFLDT 549 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~------------------s~va~s-e~gGiTqdI~a~~V~i~---idgk~~~ItfIDT 549 (996)
.+|+|+|..++|||+|+|.|+. ..|..+ .....|.+|-++...+. -++....+.|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4688999999999999997641 222221 22345777765542221 1456678999999
Q ss_pred CCccch-------HHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHH
Q 001915 550 PGHEAF-------GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHA 590 (996)
Q Consensus 550 PGhE~F-------~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~a 590 (996)
.|...- ..+.+..+-.++++||-. ...+..+..+.+.+.
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~--~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLF 193 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHHCSEEEEEE--ESSCCHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHHHhhheeecc--cccCCHHHHHHHHHH
Confidence 994221 112222334567666544 445666666665443
No 269
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=93.92 E-value=0.37 Score=57.45 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=103.7
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCCEEEEecCCCCh-------hHHhHHHhcCce--
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKAIILGFNVKAPG-------SVKTYADNKGVE-- 854 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~aiIl~Fnv~~~~-------~~~~~A~~~~V~-- 854 (996)
|+-|..+-.......|..-+.-+-|+.+.-| .-|...+.+|...+--+|-|--+++- ...++++..+..
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 6666544433333334344566666666433 44445555555555433333333221 124455555553
Q ss_pred -EEEec-----hHhHHHHHHHHHHHccccccee-eeeEEeEEEEEE-eecCCceEEEEEEeeceEeeCCcEEEeeCCEEE
Q 001915 855 -IRLYR-----VIYDLIDDMRNAMEGLLETVEE-QVPIGSAEVRAI-FSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTV 926 (996)
Q Consensus 855 -I~~~~-----IIY~Liddik~~~~~~l~~~~~-e~~~G~A~V~~v-F~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi 926 (996)
++.-+ -|-+|++.+.+.+. .|... +... .|-|..+ |....|.++-++|.+|+++.|..+.+++.|...
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp---~p~~~~~~p~-~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~ 232 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP---PPEGDPEGPL-QALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTY 232 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC---CCCCCTTSCC-EEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEE
T ss_pred eEEEeecccCCCchhHHHHHhhcCC---CccccccCCc-eeeeeeccccccccEEEEEEEEeCEEecCCEEEecccccee
Confidence 33222 34455554444332 22221 1122 3334443 445689999999999999999999999988766
Q ss_pred EEEEEeeeecccccccccccCceeEEE--EccCCCCCCCCEEEE
Q 001915 927 HVGVLDSLRRVKENVKEVNAGLECGVG--AADYDDLEEGDIIEA 968 (996)
Q Consensus 927 ~~G~I~SLk~~k~dV~ev~~G~ECGI~--i~~f~d~~~GD~ie~ 968 (996)
..++|..+.-....+.++.+|.=|.+. +.+-.++..||.|-.
T Consensus 233 ~v~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~ 276 (599)
T 3cb4_D 233 NADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL 276 (599)
T ss_dssp ECCEEEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEE
T ss_pred EEeeeeeccCCceECCEEcCCCeeEeeccccccccCccCCEeee
Confidence 666676665556789999999944432 334568999999954
No 270
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=93.83 E-value=0.46 Score=56.73 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=100.1
Q ss_pred cccchHHHHHHHHHhCCCCCeeEEEEEcccC--cCChhhHHHHHhcCC-EEEEecCCCCh-------hHHhHHHhcCce-
Q 001915 786 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA-IILGFNVKAPG-------SVKTYADNKGVE- 854 (996)
Q Consensus 786 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a-iIl~Fnv~~~~-------~~~~~A~~~~V~- 854 (996)
|+-|..+-..+....+..-+.-+=|+.+.-| .-|.....+|...+- +|+..| +++- -..++++..+..
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviN-KiDl~~a~~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVIN-KIDLPSADVDRVKKQIEEVLGLDP 157 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEE-CTTSTTCCHHHHHHHHHHTSCCCG
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEe-ccCccccCHHHHHHHHHHhhCCCc
Confidence 6666544333333334444555555555444 223334444544443 344444 2221 123344444542
Q ss_pred --EEEec-----hHhHHHHHHHHHHHccccccee-eeeEEeEEEEEE-eecCCceEEEEEEeeceEeeCCcEEEeeCCEE
Q 001915 855 --IRLYR-----VIYDLIDDMRNAMEGLLETVEE-QVPIGSAEVRAI-FSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKT 925 (996)
Q Consensus 855 --I~~~~-----IIY~Liddik~~~~~~l~~~~~-e~~~G~A~V~~v-F~~~~g~IaGc~V~~G~i~~~~~vrviR~g~v 925 (996)
++.-+ -|-+|++.+-+.+ .+|... +... .+.|-.+ |....|.|+-++|.+|.+++|..+.++..|..
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~l---p~p~~~~~~pl-~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~ 233 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRI---PPPKGDPQKPL-KALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKE 233 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHS---CCCCCCTTSCC-EEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEE
T ss_pred ccEEEEEeecCCCchHHHHHHHHhc---ccccccccCCc-ceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccce
Confidence 22222 2445555544333 223321 1222 3434333 34567999999999999999999999998875
Q ss_pred EEEEEEeeeecccccccccccCceeEEE--EccCCCCCCCCEEEE
Q 001915 926 VHVGVLDSLRRVKENVKEVNAGLECGVG--AADYDDLEEGDIIEA 968 (996)
Q Consensus 926 i~~G~I~SLk~~k~dV~ev~~G~ECGI~--i~~f~d~~~GD~ie~ 968 (996)
...++|..+.-...++.++.+|.=|.+. +.+-.+++.||.|-.
T Consensus 234 ~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~ 278 (600)
T 2ywe_A 234 YEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITH 278 (600)
T ss_dssp EECCEEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEE
T ss_pred EeeecccccCCCceECCEEecCceeeeeccccchhhccCCCEEEe
Confidence 5555665555456789999999854443 345679999999953
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.73 E-value=0.017 Score=63.36 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...++|+|++|+|||||+|.|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 468999999999999999999754
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.10 E-value=0.053 Score=60.85 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCCc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV 516 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~v 516 (996)
..-.++|+|++|+|||||+|.|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 345899999999999999999997543
No 273
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.62 E-value=0.2 Score=53.60 Aligned_cols=65 Identities=26% Similarity=0.198 Sum_probs=40.6
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHH----cCCCEE-EEecccCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA----AGVPIV-IAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~----~~IPII-VVINKiDL 606 (996)
.+.+.|+|||+.-.... ....+..+|.+|+|+..+..-.......+..+.. .+++++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46899999988533211 1234578999999998654222333444455543 345554 89999984
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.19 E-value=0.088 Score=53.44 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
|..++..|+|+|++|+|||||++.|...
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4456778999999999999999999864
No 275
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=92.16 E-value=0.43 Score=57.73 Aligned_cols=70 Identities=24% Similarity=0.270 Sum_probs=62.1
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk-~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
..|.++-++|.+|+|++|..+...+.|.....++|-.+. +...+|+++.+|.=|+|. +..++..||.|-.
T Consensus 321 ~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~~~~~Gdtl~~ 391 (691)
T 1dar_A 321 YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GLKETITGDTLVG 391 (691)
T ss_dssp TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CCSSCCTTCEEEE
T ss_pred CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe--CcccCccCCEEec
Confidence 469999999999999999999999988877777887776 678899999999999987 7889999999964
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.15 E-value=0.085 Score=54.69 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.8
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHH
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
..+..++..|+|+|.+|+|||||++.|.
T Consensus 21 ~~~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 21 QSMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -----CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3455567899999999999999999997
No 277
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.11 E-value=0.23 Score=56.19 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCceeeeceEEEEEeeCCccccEEEEeCCCccchHHHHHHhhhcCCe
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGiTqdI~a~~V~i~idgk~~~ItfIDTPGhE~F~~mr~rga~~ADi 568 (996)
..+..|+|+|.+|+|||||..+|.... ++..+ +.... .............+.. .
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-------------~~~~i----~~D~~-------~~~~~~~~~~~~~l~~--g 309 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-------------GYVHV----NRDTL-------GSWQRCVSSCQAALRQ--G 309 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-------------TCEEC----CGGGS-------CSHHHHHHHHHHHHHT--T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-------------CcEEE----ccchH-------HHHHHHHHHHHHHHhc--C
Confidence 456789999999999999999986532 01111 11110 0111111222222222 2
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 569 VILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
..+|+|.......+....+..++..+.++.++.-.++
T Consensus 310 ~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 310 KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 2345787765544555556667777888766655554
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.04 E-value=0.095 Score=51.91 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+...++|+|++|+|||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999863
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.03 E-value=0.094 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
++..|+|+|++|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999764
No 280
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=91.98 E-value=0.19 Score=58.96 Aligned_cols=66 Identities=27% Similarity=0.349 Sum_probs=54.5
Q ss_pred CceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc----cccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 898 SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV----KENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 898 ~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~----k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
.|.|+-++|.+|++++|..+.+.+.|+. .+|.+|..+ .+.|.++.+|.=|||. +..+++.||.|-.
T Consensus 312 ~G~i~~~RV~sG~l~~g~~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~~~~~Gdtl~~ 381 (529)
T 2h5e_A 312 RDRVAFMRVVSGKYEKGMKLRQVRTAKD---VVISDALTFMAGDRSHVEEAYPGDILGLH--NHGTIQIGDTFTQ 381 (529)
T ss_dssp SCCCEEEEEEESCEETTCEEEETTTTEE---EECSCEECCCC-----CCEECTTCEEEEC--CSSCCCTTCEEES
T ss_pred CceEEEEEEecCeEcCCCEEEEeeCCCE---EEeceeeEEeCCCceEcceECCCCEEEEe--ccCCCccCCEeec
Confidence 5899999999999999999999999873 467777654 7899999999999886 7889999999853
No 281
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.70 E-value=0.39 Score=50.26 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=47.4
Q ss_pred ccccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCC
Q 001915 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDK 606 (996)
Q Consensus 540 k~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL 606 (996)
..+.+.|+|||+.-.........+..+|.+|+|+..+..........++.++..+++++ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 34679999999854332222223346899999998876555556666777777788977 99999884
No 282
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.69 E-value=0.11 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
...++++|++|+|||||++.|.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3578999999999999999998643
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.64 E-value=0.079 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
...++|+|++|+|||||++.|.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999975
No 284
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=91.62 E-value=0.73 Score=55.87 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk-~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
..|.++-++|.+|+|++|..+...+.|+....++|-.+. +...+|+++.+|.=|+|. +.+++..||.|-.
T Consensus 329 ~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl~~~~~GdTl~~ 399 (704)
T 2rdo_7 329 FVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI--GLKDVTTGDTLCD 399 (704)
T ss_pred CCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe--CcccCccCCEEeC
Confidence 469999999999999999999999888766666666665 457899999999999997 7889999999853
No 285
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.43 E-value=0.1 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
+++|+|++|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.23 E-value=0.096 Score=52.99 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.++..|+|+|++|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.19 E-value=0.12 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35568999999999999999999754
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.15 E-value=0.11 Score=51.29 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=23.5
Q ss_pred hcccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 485 ~~l~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+.+..++.+|+|+|.+|+||||+.+.|...
T Consensus 2 ~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 2 GHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345667889999999999999999999763
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.15 E-value=0.12 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
++..|+|+|.+|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4557999999999999999999764
No 290
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.14 E-value=0.1 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..++|+|++|+|||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999853
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.04 E-value=0.14 Score=50.77 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
++..|+|+|.+|+|||||++.|....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999997643
No 292
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=90.97 E-value=0.62 Score=55.50 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHHHccccccee--eeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeecc
Q 001915 861 IYDLIDDMRNAMEGLLETVEE--QVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV 937 (996)
Q Consensus 861 IY~Liddik~~~~~~l~~~~~--e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~ 937 (996)
|-+|++.+..++...+++... ..--..+.|..+|.. ..|.++-++|.+|+|+.|..+.+...+.. +..+|.+|...
T Consensus 205 I~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~-~~~rV~~i~~~ 283 (594)
T 1g7s_A 205 IPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV-ISTRIRSLLKP 283 (594)
T ss_dssp HHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE-EEEECCEEEEE
T ss_pred chhHHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc-eeEEEeEEEec
Confidence 345666666555443322111 111235566677763 56999999999999999999988865442 25567776543
Q ss_pred ------------cccccccc--cCceeEEEEccCCCCCCCCEEEEEEEE
Q 001915 938 ------------KENVKEVN--AGLECGVGAADYDDLEEGDIIEAFNSI 972 (996)
Q Consensus 938 ------------k~dV~ev~--~G~ECGI~i~~f~d~~~GD~ie~y~~~ 972 (996)
...|+++. .|..|.+ .+..+...||.|...+..
T Consensus 284 ~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l~~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 284 RPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGIDDVMAGSPLRVVTDP 330 (594)
T ss_dssp CCCC----CCCSEEECSEEESSEEEEEEC--SSCTTBCTTCEEEECSSH
T ss_pred cccchhhhccCCceEccEEcCCCCcEEEE--cccCCCCCCCEEEecCCH
Confidence 35678887 6666654 356788999999887643
No 293
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=90.67 E-value=0.6 Score=56.47 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=60.8
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 968 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk-~~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie~ 968 (996)
..|.++-++|.+|+|++|..++..+.|+....++|-.+. +...+|.++.+|.=|+|. +..++..||.|-.
T Consensus 321 ~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~~~~~GdTl~~ 391 (693)
T 2xex_A 321 YVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GLKDTGTGDTLCG 391 (693)
T ss_dssp TTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SCSSCCTTCEEEE
T ss_pred CCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe--CcccCccCCEEec
Confidence 469999999999999999999999988766667776665 567899999999999987 7889999999864
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.65 E-value=0.13 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|+.|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999875
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.48 E-value=0.16 Score=51.26 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.+|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.32 E-value=0.15 Score=51.03 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+...+..|+|+|.+|+|||||.+.|..
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999999999864
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.17 E-value=0.17 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..+...++|+|+.|+|||||++.|.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 346678999999999999999999864
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.16 E-value=0.15 Score=50.07 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..++..|+|+|.+|+||||+...|..
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345778999999999999999999864
No 299
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.92 E-value=0.15 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|++|+|||||++.|.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999999863
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.86 E-value=0.18 Score=47.83 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHI 511 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL 511 (996)
+.|+|+|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.74 E-value=0.2 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 302
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.49 E-value=0.18 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..|+|+|.+|+|||||++.|..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 303
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=89.43 E-value=0.83 Score=53.59 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCCCCCCEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDLEEGDII 966 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~-~k~dV~ev~~G~ECGI~i~~f~d~~~GD~i 966 (996)
..|.++-++|.+|++++|..+...|.|+....+.|..+.. .+.+|.++.+|.=||+. +-.+++.||.|
T Consensus 310 ~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~l~~~~~GDtl 378 (528)
T 3tr5_A 310 HRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH--NHGTIQIGDTF 378 (528)
T ss_dssp CCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--ESSSCCTTCEE
T ss_pred CCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc--CCCCCccCCEE
Confidence 3589999999999999999999999997655555444432 56789999999998874 66789999988
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.31 E-value=0.23 Score=51.16 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
++..|+|+|++|+|||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 5568999999999999999999854
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.14 E-value=0.22 Score=49.85 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..++..|+|+|.+|+|||||++.|...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999999998653
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.09 E-value=0.2 Score=50.35 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
-++..|+|+|.+|+|||||++.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46678999999999999999999753
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.08 E-value=0.19 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
++-.++++|++|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45579999999999999999754
No 308
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.81 E-value=0.24 Score=51.82 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
....-.++|+|+.|+|||||++.|.+-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999999764
No 309
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.69 E-value=0.23 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.39 E-value=0.26 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 311
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.20 E-value=0.26 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999998764
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.19 E-value=0.28 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
...|+|+|.+|+|||||++.|..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.13 E-value=0.25 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..++..|+|+|++|+|||||++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34667899999999999999999875
No 314
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.12 E-value=0.27 Score=48.63 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
...-.++++|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345589999999999999999998654
No 315
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.11 E-value=0.33 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
++..|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.09 E-value=0.27 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++|+|.+|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999974
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.98 E-value=0.29 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 318
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.95 E-value=0.27 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
-.++|+|+.|+|||||++.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 319
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.95 E-value=0.29 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999764
No 320
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.85 E-value=0.29 Score=52.03 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46678999999999999999999764
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.79 E-value=0.31 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..+|+++|.+|+||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999864
No 322
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.68 E-value=0.36 Score=48.03 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999874
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.62 E-value=0.32 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 324
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.53 E-value=0.34 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.++|+|.+|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999754
No 325
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.51 E-value=0.27 Score=51.53 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999764
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.47 E-value=0.36 Score=48.04 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999865
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.43 E-value=0.35 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+...|+|+|.+|+|||||...|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 328
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.39 E-value=0.32 Score=50.63 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999764
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.39 E-value=0.3 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|..|+|||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999875
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.36 E-value=0.35 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.++|+|++|+|||||+..|..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4667899999999999999998873
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.36 E-value=0.32 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999764
No 332
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.28 E-value=2.3 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..-.++|+|+.|+|||||++.|.+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999864
No 333
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.28 E-value=0.34 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45668999999999999999999764
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.27 E-value=0.34 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.++..|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999763
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.21 E-value=0.37 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..+..+|+|+|.+|+|||||++.|..
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445667999999999999999999863
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.18 E-value=0.25 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=17.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH-cC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIR-KT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~-~s 514 (996)
.+...|+|+|++|+|||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 355689999999999999999998 54
No 337
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.18 E-value=0.32 Score=48.78 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.++|+|++|+|||||+..|..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999976
No 338
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.07 E-value=0.37 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999874
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.98 E-value=0.31 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 340
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.96 E-value=0.35 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 46678999999999999999999764
No 341
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.94 E-value=0.27 Score=50.66 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999875
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.92 E-value=0.41 Score=46.32 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..|.|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.82 E-value=0.36 Score=50.60 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999764
No 344
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.78 E-value=0.4 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999874
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.76 E-value=0.36 Score=47.78 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.72 E-value=0.36 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999764
No 347
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.69 E-value=0.38 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999764
No 348
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.56 E-value=0.39 Score=51.42 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999999764
No 349
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.55 E-value=0.37 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45668999999999999999999764
No 350
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.55 E-value=3 Score=40.49 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.+.|.|.+|+|||+|+..+..
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998865
No 351
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.52 E-value=0.38 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+|+|+|.+|+|||||++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.52 E-value=0.36 Score=48.52 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999865
No 353
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.52 E-value=0.39 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45668999999999999999999764
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.52 E-value=0.38 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|+|.+|+|||||...|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 355
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.34 E-value=0.38 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45668999999999999999999764
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.22 E-value=0.47 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++.+|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.19 E-value=0.37 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..++..|+|+|.+|+|||||++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34667899999999999999998864
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.19 E-value=0.32 Score=47.45 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+++|.+|+||||+...|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.02 E-value=0.43 Score=52.36 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.3
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..+.-.++|+|++|+|||||++.|.+-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999998753
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.00 E-value=0.33 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
+++|+|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998753
No 361
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.96 E-value=0.35 Score=50.10 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35567999999999999999999764
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.96 E-value=0.43 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||++..|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 363
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=85.88 E-value=0.78 Score=55.17 Aligned_cols=75 Identities=24% Similarity=0.184 Sum_probs=57.3
Q ss_pred eEEEEEEee-cCCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeec----ccccccccccCceeEEEEccCCCCC
Q 001915 887 SAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR----VKENVKEVNAGLECGVGAADYDDLE 961 (996)
Q Consensus 887 ~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~----~k~dV~ev~~G~ECGI~i~~f~d~~ 961 (996)
.|.|-++|. ...|.++-++|.+|+|++|..+.+.+ . ..+|.+|.. ...+|.++.+|.=|+|. +.+++.
T Consensus 285 ~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~---~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl~~~~ 357 (665)
T 2dy1_A 285 LAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--G---QVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KAEGLH 357 (665)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--S---CEEESSEEEEETTEEEEESCEETTCEEEES--SCTTCC
T ss_pred EEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--C---eEEEeEEEEEeCCCeeECCEECCCCEEEEe--CCccCc
Confidence 344455554 35799999999999999999987655 2 235555543 56799999999999996 778899
Q ss_pred CCCEEEE
Q 001915 962 EGDIIEA 968 (996)
Q Consensus 962 ~GD~ie~ 968 (996)
.||.|-.
T Consensus 358 ~Gdtl~~ 364 (665)
T 2dy1_A 358 RGMVLWQ 364 (665)
T ss_dssp TTCEEES
T ss_pred cCCEEec
Confidence 9999863
No 364
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.88 E-value=0.42 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35568999999999999999999764
No 365
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.78 E-value=0.39 Score=47.02 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+...+.++|++|+|||||+..+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.77 E-value=0.47 Score=48.03 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.76 E-value=0.4 Score=51.89 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|..|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999875
No 368
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.74 E-value=0.41 Score=50.94 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
...-.++|+|+.|+|||||++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3455899999999999999999875
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.71 E-value=0.49 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+.+.++|+|..|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 370
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.71 E-value=0.43 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|+|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.71 E-value=0.4 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999998864
No 372
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.67 E-value=0.43 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45668999999999999999999764
No 373
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.61 E-value=0.44 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 557899999999999999999863
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.60 E-value=0.51 Score=47.00 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..++..|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 375
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.58 E-value=0.35 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=16.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.49 E-value=0.47 Score=48.39 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||+...|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.45 E-value=0.53 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+-..+|+|+.|+|||||+++|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44889999999999999999864
No 378
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.35 E-value=0.45 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 379
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.31 E-value=0.46 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999764
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.99 E-value=0.52 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+..|+|+|.+|+||||+...|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.88 E-value=0.51 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 382
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.85 E-value=0.47 Score=48.32 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q 001915 494 LTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 494 VaIVGh~dvGKTSLLnrL~~s 514 (996)
|+|+|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=84.76 E-value=0.28 Score=49.10 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..|+|+|.+|+|||||++.|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 384
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.73 E-value=0.53 Score=51.06 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45668999999999999999999764
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.73 E-value=0.56 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||+...|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.71 E-value=0.49 Score=47.96 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999999864
No 387
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.52 E-value=0.47 Score=50.71 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.-.++|+|+.|+|||||++.|.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999997654
No 388
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=84.42 E-value=1.1 Score=47.74 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=48.7
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~ 607 (996)
.+.+.|+|||+.-.... ....+..+|.+|+|+.............+..+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 35799999998543321 1223467899999999887666777777788887788876 899999963
No 389
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.38 E-value=3.1 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+..+.|.|++|+|||+|+.+|...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998753
No 390
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=84.25 E-value=0.12 Score=60.99 Aligned_cols=106 Identities=24% Similarity=0.335 Sum_probs=76.0
Q ss_pred HhHHHHHHHHHHHcccccceeeeeEEeEEEEEEeec-CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeeccc-
Q 001915 861 IYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVK- 938 (996)
Q Consensus 861 IY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~~k- 938 (996)
|.+|++.+...+. .+++.....--..+.|..+|.. ..|.|+-..|..|.++.|..+ + -|. ..|+|.+|..++
T Consensus 155 I~eLle~I~~l~~-~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v--~-~g~--~~~kVr~i~~~~g 228 (537)
T 3izy_P 155 MMALAEATIALAE-MLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL--V-AGK--SWAKVRLMFDENG 228 (537)
T ss_dssp SHHHHHHHHHHHT-TCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE--C-CSS--CCEEEEEEEECCC
T ss_pred chhHHHHHHHhhh-cccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE--E-eCC--ceEEEEEEEcCCC
Confidence 4567776666554 3333332222345667788874 579999999999999999975 2 233 348999999875
Q ss_pred ccccccccCceeEEEEccCCCC-CCCCEEEEEEEEEe
Q 001915 939 ENVKEVNAGLECGVGAADYDDL-EEGDIIEAFNSIQR 974 (996)
Q Consensus 939 ~dV~ev~~G~ECGI~i~~f~d~-~~GD~ie~y~~~~~ 974 (996)
++|+++.+|.=|+|. ++++. ..||.|...+....
T Consensus 229 ~~v~~A~~G~~V~i~--g~~~~~~~Gd~l~~~~~~~~ 263 (537)
T 3izy_P 229 RAVNEAYPSMPVGII--GWRDLPSAGDEILEVESEPR 263 (537)
T ss_dssp CCSCCSCCSTTCCCC--SSEEEEEEESSCCSCCSSCC
T ss_pred CCCcEEcCCCEEEEE--CCCCCCCCCCEEEecCChHH
Confidence 899999999999885 66664 88999888865543
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.22 E-value=0.57 Score=49.44 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=21.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
|..++.+|+|+|.+|+|||||.+.|..
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445678999999999999999998854
No 392
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.92 E-value=0.57 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..++.+|+|+|.+|+||||+...|..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999999964
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.72 E-value=0.58 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 394
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.66 E-value=1.9 Score=47.67 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.+.|+|++|+|||||+..|...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998753
No 395
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=83.64 E-value=0.44 Score=48.98 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.++..|+|+|..|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35568999999999999999998764
No 396
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.59 E-value=0.72 Score=43.88 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+..+.|.|.+|+|||+|+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988653
No 397
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.49 E-value=0.54 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
....++|+|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998763
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.34 E-value=0.65 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 399
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.13 E-value=0.45 Score=51.81 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+-+.++|+|..|+|||||++.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4468999999999999999999864
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.09 E-value=0.6 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+++.|+|+|.+|+||||+...|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 401
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=83.03 E-value=2.1 Score=44.39 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=40.6
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHH---HHHHHHHH---cCCCEE-EEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTN---EAIAHAKA---AGVPIV-IAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~---E~I~~ak~---~~IPII-VVINKiDL~ 607 (996)
.+.+.|+|||+..... ....+..+|.+|+++..+..-..... +.+..+.. .+.+++ +++|++|..
T Consensus 111 ~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4679999999864322 23445679999999987652222222 23333322 256664 899999864
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.97 E-value=0.57 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=82.87 E-value=0.79 Score=45.66 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+.-.++|+|++|+|||||+..|..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 556899999999999999999874
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.82 E-value=0.64 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..|+|+|.+|+||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 405
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.82 E-value=0.75 Score=51.75 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..+.-.++|+|+.|+|||||++.|.+-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 356678999999999999999999864
No 406
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.76 E-value=0.76 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 45668999999999999999999864
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=82.71 E-value=0.76 Score=51.53 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455689999999999999999998743
No 408
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.67 E-value=0.66 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999998643
No 409
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.64 E-value=0.5 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 46678999999999999999998764
No 410
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=82.55 E-value=2.3 Score=45.92 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=49.7
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~ 607 (996)
.+.+.|+|||+.-.... ....+..+|.+|+|+.............+..+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 35699999999644321 1223477999999999887777778888888888888754 888999963
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.54 E-value=0.73 Score=46.32 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.51 E-value=0.81 Score=46.93 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..++..|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445667999999999999999999864
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=82.49 E-value=0.79 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456689999999999999999998643
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=82.42 E-value=0.66 Score=50.51 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++-+++++|+.|+|||||+..|.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999998863
No 415
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.40 E-value=0.55 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.-+++|+|+.|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
No 416
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.35 E-value=3.2 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+..|.|.|.+|+|||+|+.+|..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 445799999999999999999854
No 417
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.32 E-value=0.69 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
...-.++|+|+.|+|||||++.|.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 355689999999999999999998643
No 418
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.26 E-value=2.7 Score=43.61 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=49.1
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHc--CCCEEEEecccCCCCCChhHHHHHH
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQEL 618 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~--~IPIIVVINKiDL~~a~~erv~~eL 618 (996)
.+.+.|+|||+.-. ......+..+|.+|+++..+..-.......+..+... +.++.+++|+++.. .....+.+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~-~~~~~~~~~l 220 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN-RTHKTLFEIL 220 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT-CSCCHHHHHH
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc-chHHHHHHHH
Confidence 46799999998543 2344455679999999998653333344455555555 45788999999532 2234444444
Q ss_pred Hh
Q 001915 619 SS 620 (996)
Q Consensus 619 ~~ 620 (996)
..
T Consensus 221 ~~ 222 (267)
T 3k9g_A 221 KT 222 (267)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.21 E-value=0.38 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|+|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 420
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.12 E-value=0.79 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 421
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.02 E-value=0.84 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45668999999999999999999864
No 422
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=81.94 E-value=2.3 Score=49.99 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCceEEEEEEeeceEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCCCCCCEEE
Q 001915 897 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDLEEGDIIE 967 (996)
Q Consensus 897 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLk~-~k~dV~ev~~G~ECGI~i~~f~d~~~GD~ie 967 (996)
-.|.++=++|.+|+|++|..+...|.|+....++|..+.- .+.+|.++.+|.=|+|. +..++..||.|-
T Consensus 328 ~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~GDTl~ 397 (548)
T 3vqt_A 328 HRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NHGTIKIGDTFT 397 (548)
T ss_dssp ---CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CSSCCCTTCEEE
T ss_pred CCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec--CCccCccCCEec
Confidence 3588999999999999999999999998666666555543 45789999999988875 888999999874
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.70 E-value=0.83 Score=43.71 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 424
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.61 E-value=0.73 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
-.|+|+|+.|+|||||++.|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999875
No 425
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.46 E-value=0.71 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|+|+|.+|+|||||...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 426
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=81.43 E-value=1.5 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=20.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
.+.-.+.|.|.|++|||||+..|.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 455679999999999999988775
No 427
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.38 E-value=0.73 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35568999999999999999999864
No 428
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.37 E-value=0.77 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++.+|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 429
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.34 E-value=0.81 Score=44.40 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHH
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~ 512 (996)
+...+|+|+.|+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
No 430
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=81.33 E-value=0.91 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 456689999999999999999998643
No 431
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.31 E-value=0.72 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+..+++|+|+.|+|||||++.|.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 46789999999999999999999764
No 432
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=81.18 E-value=1.7 Score=43.90 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=45.1
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~ 607 (996)
.+.+.|+|||+... ......+..+|.+|+|+..+..........+..+...+.+ +-+++|++|..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 45699999998543 3334556889999999987643333445556666666665 56889999864
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.11 E-value=0.83 Score=48.82 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHH
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
...++..|+|+|.+|+||||+.+.|.
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34566789999999999999999986
No 434
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.01 E-value=0.85 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|+|.+|+||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 435
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.92 E-value=0.93 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 436
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.92 E-value=2 Score=44.96 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=26.6
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccCC
Q 001915 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiDL 606 (996)
+.-++++|=-.-+.....+.+..+...++|+|+++-..|-
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3446667755444444555666666678999999988884
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.89 E-value=0.88 Score=47.41 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++.+|.|+|.||+||+|+...|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566788999999999999999864
No 438
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=80.81 E-value=1 Score=45.52 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=42.8
Q ss_pred ccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCC
Q 001915 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (996)
Q Consensus 542 ~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL 606 (996)
+.+.|+|||+.-.. .....+..+|.+|+|+..+..-.......+..+...+++ +.+++|+.+.
T Consensus 132 yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 46899999985433 223445889999999987643333334445555666765 7899999983
No 439
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.74 E-value=0.78 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+|||||...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 440
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.60 E-value=0.59 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|.++|.+|+|||||...|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999999864
No 441
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.59 E-value=1.1 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.++|+|++|+|||||+..|..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 442
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=80.54 E-value=0.82 Score=51.08 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..-.|+|+|++|+|||||++.|.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999875
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.53 E-value=0.94 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|+|+|.+|+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 444
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=80.39 E-value=0.97 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
-+.|+|++|+|||||++.|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999753
No 445
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.36 E-value=0.93 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+...|+|+|.+|+||||+...|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 446
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.20 E-value=1.1 Score=47.63 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..+.-.++|+|++|+|||||+..|...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345668999999999999999988753
No 447
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.14 E-value=0.75 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455689999999999999999998643
No 448
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.14 E-value=0.85 Score=43.79 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..|+|+|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.77 E-value=0.94 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.225 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+..++|+|++|+|||||++.|.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999753
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=79.72 E-value=1.1 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45668999999999999999999864
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.69 E-value=1.1 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..+.|.|++|+|||+|+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999865
No 452
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=79.63 E-value=3.2 Score=43.78 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=42.3
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHH------cCCCE-EEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA------AGVPI-VIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~------~~IPI-IVVINKiDL~ 607 (996)
.+.+.|+|||+.-... ....+..+|.+|+++..+..........+..+.. .++++ -+++|++|..
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4679999999864432 2233456999999998876444444444444433 25664 4899999963
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.45 E-value=0.92 Score=43.28 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+..+.|.|.+|+|||+|+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988653
No 454
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=79.21 E-value=0.95 Score=50.69 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++-+|+|+|..|+|||||+..|.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3456899999999999999998863
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.09 E-value=1.3 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++.+|+|+|.+|+||||+...|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999999999998864
No 456
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.06 E-value=0.93 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
....++|+|++|+|||||++.|.+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456999999999999999999763
No 457
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.04 E-value=0.96 Score=48.21 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
-++++|++|+|||||++.|.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999976
No 458
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.99 E-value=1.1 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.++..|+|.|.+|+||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999875
No 459
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=78.88 E-value=1.9 Score=44.51 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=43.8
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL 606 (996)
.+.+.|+|||+... ......+..+|.+|+|+..+..........+..+...+.+ +-+++|++|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 35699999998543 3334456789999999987643333445555666655655 5589999986
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=78.88 E-value=0.71 Score=49.81 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=19.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+++.|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999865
No 461
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=78.83 E-value=0.71 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK 515 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~ 515 (996)
.+.-.++|+|+.|+|||||++.|.+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455689999999999999999998643
No 462
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.82 E-value=1.3 Score=44.80 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.++|+|++|+|||||+..|..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999999876
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=78.45 E-value=1.3 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++|+|.|.+|+||||+...|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999864
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.34 E-value=1.3 Score=43.86 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..+.|.|.+|+|||+|+.++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 465
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=78.30 E-value=2.7 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
..+.|.|++|+|||+|..++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999998753
No 466
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=78.30 E-value=1.5 Score=44.84 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=42.2
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcC---------CCEEEEecccCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG---------VPIVIAINKIDK 606 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~---------IPIIVVINKiDL 606 (996)
.+.+.|+|||+.-. ......+..+|.+|+|+..+..-.......+..+...+ ..+-+++|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 46799999998543 34455567899999999876432333333444443322 357899999984
No 467
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.27 E-value=1.1 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+.-.|+|+|+.|+|||||++.|.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999998753
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.17 E-value=1.2 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-+++|+|+.|+|||||++.|.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46679999999999999999999865
No 469
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.97 E-value=1.3 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 001915 493 VLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~s 514 (996)
-|+|+|++|+|||||++.|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999753
No 470
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=77.50 E-value=1.2 Score=46.71 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|+|.+|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999863
No 471
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=77.40 E-value=3.6 Score=44.20 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=49.6
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IP-IIVVINKiDL~ 607 (996)
.+.+.|+|||+.-.... ....+..+|.+|+|+.............++.+...+.+ +-+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 35699999998644321 12334779999999998876667777788888888887 45889999964
No 472
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=77.13 E-value=1.5 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..+.|.|++|+|||||+..+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 473
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.06 E-value=1.4 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+|+|+|.+|+||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998854
No 474
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=76.94 E-value=1.4 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 475
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.85 E-value=1.4 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 001915 493 VLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 493 kVaIVGh~dvGKTSLLnrL~~ 513 (996)
+|.|+|.||+||+|+...|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 476
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.80 E-value=4.3 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.+.|.|++++|||+|+..|..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHH
Confidence 3566899999999999999998874
No 477
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.72 E-value=6 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+..|.|.|++|+|||+|+.++..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999865
No 478
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.60 E-value=1.3 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHH
Q 001915 492 PVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~ 512 (996)
...+|+|+.|+|||||+++|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999987
No 479
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.60 E-value=1.2 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=76.20 E-value=1.3 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHc
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~ 513 (996)
-.++|+|+.|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999864
No 481
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.19 E-value=1.4 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45568999999999999999999764
No 482
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.09 E-value=1.3 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..+|+|+|.+|+|||||.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998854
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.96 E-value=0.91 Score=47.44 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=22.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 487 l~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+..++..|+|.|..|+||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457789999999999999999988653
No 484
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.93 E-value=1.7 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHc
Q 001915 491 PPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 491 ppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
+..|.|.|++|+|||||+.+|.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45699999999999999999865
No 485
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.81 E-value=1.5 Score=51.57 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999864
No 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.71 E-value=1.6 Score=51.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
....-+++|+|+.|+|||||++.|.+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356678999999999999999999864
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.56 E-value=1.5 Score=45.14 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
++..|+|.|..|+||||+++.|...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998753
No 488
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.46 E-value=1.7 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 488 EDRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 488 ~~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
..++..++|+|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34566899999999999999999975
No 489
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=75.39 E-value=0.67 Score=54.22 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCCccccccCCc-eee--eceEEEEEeeCCccccEEEEeCCCccchHH---HHHH-
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGI-TQG--IGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---MRAR- 561 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s~va~se~gGi-Tqd--I~a~~V~i~idgk~~~ItfIDTPGhE~F~~---mr~r- 561 (996)
..+..|.++|.+|+||||+...|...... .++ +.. .+.+... ..+......|++.-+.+.|.. ....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~----~~~d~~v~s~D~~r~~--~~~~~~~~~~f~~~~~~~~~~re~~~~~~ 106 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNW----IGVPTKVFNVGEYRRE--AVKQYSSYNFFRPDNEEAMKVRKQCALAA 106 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHHHH--HHSCCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh----cCCCeEEecccHHHHH--hccCCccccccCcccHHHHHHHHHHHHHH
Confidence 44568999999999999999988532100 000 000 0000000 000000012233333333321 1001
Q ss_pred ------hhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 562 ------GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 562 ------ga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
.+.....-++|+|++.+...+.......++..+.+++++--.+|
T Consensus 107 l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~ 156 (520)
T 2axn_A 107 LRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCD 156 (520)
T ss_dssp HHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred HHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 11113456788999887666555566667777777666654554
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=74.92 E-value=1.7 Score=44.23 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIR 512 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~ 512 (996)
.+...+|+|+.|+|||||+++|.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34578999999999999999985
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=74.82 E-value=1.7 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-+++|+|+.|+|||||++.|.+.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46678999999999999999999864
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.50 E-value=1.6 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
++..|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
No 493
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.40 E-value=1.9 Score=45.39 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRK 513 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~ 513 (996)
.+.-.++|+|++|+|||||+..|..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3667899999999999999998875
No 494
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=74.38 E-value=1.5 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 490 RPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 490 RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+.-.++|+|+.|+|||||++.|.+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4457999999999999999999864
No 495
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.21 E-value=8.3 Score=38.54 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=45.6
Q ss_pred cccEEEEeCCCccc--hH--HHHHHhhhc-CCeEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEecccCCCCCChhHH
Q 001915 541 LQPCVFLDTPGHEA--FG--AMRARGARV-TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGANPERV 614 (996)
Q Consensus 541 ~~~ItfIDTPGhE~--F~--~mr~rga~~-ADiVILVVDAsdgv~~Qt~E~I~~ak~~~IPII-VVINKiDL~~a~~erv 614 (996)
.+.+.|+||||.-. .. ......+.. .+.+|+|+........+....++.++..+.+++ +++|++|.........
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~ 187 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEY 187 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHH
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHH
Confidence 35799999997421 10 011112222 234788887755444455666666667788855 8899999643233344
Q ss_pred HHHHHh
Q 001915 615 MQELSS 620 (996)
Q Consensus 615 ~~eL~~ 620 (996)
...+.+
T Consensus 188 ~~~l~~ 193 (224)
T 1byi_A 188 MTTLTR 193 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 496
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=74.14 E-value=1.4 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
.+.-.++|+|+.|+|||||++.|.+-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999764
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=73.86 E-value=5.5 Score=39.80 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=25.5
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEecccC
Q 001915 567 DIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (996)
Q Consensus 567 DiVILVVDAsdgv~~Qt~E~I~~ak~~~IPIIVVINKiD 605 (996)
+.-++++|=-+.+.+...+.+..+...++++|+.+...|
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 456777775444544555666655556888888888666
No 498
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=73.82 E-value=4.2 Score=41.14 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=45.0
Q ss_pred cccEEEEeCCCccchHHHHHHhhhcCCeEEEEEecCCCCChhHHHHHHHHHHcCC---CEEEEecccCCC
Q 001915 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV---PIVIAINKIDKD 607 (996)
Q Consensus 541 ~~~ItfIDTPGhE~F~~mr~rga~~ADiVILVVDAsdgv~~Qt~E~I~~ak~~~I---PIIVVINKiDL~ 607 (996)
.+.+.|+|||+.-.. .....+..+|.+|+++..+..-.......++.+...+. .+-+++|++|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 467999999985432 33345678999999998764333444555666665553 378999999964
No 499
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.82 E-value=1.9 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 001915 492 PVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 492 pkVaIVGh~dvGKTSLLnrL~~s 514 (996)
+.+.|.|++|+|||||+..+...
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
No 500
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.58 E-value=2 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 001915 489 DRPPVLTIMGHVDHGKTTLLDHIRKT 514 (996)
Q Consensus 489 ~RppkVaIVGh~dvGKTSLLnrL~~s 514 (996)
...-.++|+|+.|+|||||++.|.+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45668999999999999999999864
Done!