BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001916
(996 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1047 (45%), Positives = 647/1047 (61%), Gaps = 115/1047 (10%)
Query: 4 MANNAPYSGAQVPHQPPMVGSMDPPRG--------------------------------- 30
MANN Y G Q P Q P S+D PRG
Sbjct: 1 MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59
Query: 31 QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 86
+GG +++ G+P Q P MH RP HVP PP ++S PN ++
Sbjct: 60 RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117
Query: 87 PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 142
+SL +P VQ PG GG P A SY S PQ+ G
Sbjct: 118 -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYE---GSRVPPQVTG----------- 162
Query: 143 QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 202
PSI + Q S+ ++ S+ + PT EQ A L+P ++ TDW E
Sbjct: 163 ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211
Query: 203 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 262
HTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPDGRKYYYNK+TKQS
Sbjct: 212 HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271
Query: 263 WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 322
W++P+E+K+ REQAE AS++G P+++ I + ++ +++ + + + S+
Sbjct: 272 WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325
Query: 323 PVAVVPIIAASET-QPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 381
V + S+ QPA SVP +S S V N D + D + + D S + G +V
Sbjct: 326 SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378
Query: 382 --TDNTVAEA--KNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 429
T+ + A K+ +S +MS + S P +E++K V EKV
Sbjct: 379 PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434
Query: 430 LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 489
EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435 TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494
Query: 490 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 549
K AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495 KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554
Query: 550 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 609
ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555 ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614
Query: 610 LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 669
LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF L++ +
Sbjct: 615 LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674
Query: 670 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 729
A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+ E K++IKD
Sbjct: 675 ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734
Query: 730 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 789
+KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735 VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794
Query: 790 LEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKD 849
++ D+L S K+I+A+S+WE + L+EGS++ S+IGDES + F+++V+ LKEQ+
Sbjct: 795 QTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSN- 853
Query: 850 YERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE---N 906
+ K+ K E REE D+ + K GR+K+R RER+ +DH KK A + D E
Sbjct: 854 ---RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKYNHDMNEPHGK 910
Query: 907 DSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPR-RLASTPESENESR 965
+ +RSG+D+ +HR+RH S + EN+ D K H+ KK R + E+E E +
Sbjct: 911 ERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGK 966
Query: 966 HKRHRRDNRNGSRKNGDHEDLEDGEYG 992
KR R++ +R++ E+LEDGE G
Sbjct: 967 EKRRRKEE---AREHTKEEELEDGECG 990
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1025 (48%), Positives = 676/1025 (65%), Gaps = 104/1025 (10%)
Query: 4 MANNAPYS-GAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHP------- 55
MANN P S G Q PMV P QG + A SQP F P H
Sbjct: 1 MANNPPQSSGTQFR---PMV-----PGQQGQHFVPAA--SQP----FHPYGHVPPNVQSQ 46
Query: 56 -------------LPARPGPPAPSHVPPPPQVMSLPNAQPSNHI--PPSSLPRPNVQALS 100
P RPG P H+ Q +S+P Q +N I S+ P+PN ++
Sbjct: 47 PPQYSQPIQQQQLFPVRPGQPV--HITSSSQAVSVPYIQ-TNKILTSGSTQPQPNAPPMT 103
Query: 101 SYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSIS-AGGQLGVSV 159
G G P ++ YTF PSSY Q Q V QP SQMHV + A V V
Sbjct: 104 ----GFATSGPPFSSPYTFVPSSYPQQQPTSLV-----QPNSQMHVAGVPPAANTWPVPV 154
Query: 160 SQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRV 219
+QST +PVQ T +Q ++ P L P+SA +DW+EHTSADGR+YY+NKRT+
Sbjct: 155 NQSTSLVSPVQQTGQQTPVAVSTDP-GNLTPQSA----SDWQEHTSADGRKYYYNKRTKQ 209
Query: 220 STWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKA 279
S W+KP ELMT +ERADAST WKEFT+P+G+KYYYNKVTK+SKW++P++LKLAREQA+ A
Sbjct: 210 SNWEKPLELMTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLA 269
Query: 280 SIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPAL 339
S K + SE T +S A SS+D++ STV +V S + + ++S Q L
Sbjct: 270 SEKTSLSEAG---STPLSH-----HAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGL 321
Query: 340 VSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSAS 399
+VP T P ++AP+ S +I + T+ T + +NLS+ A
Sbjct: 322 -AVPVTRP-----------------PSVAPVTPTSGAISD--TEATTIKG-DNLSSRGAD 360
Query: 400 DLVGASDKVPPPVTE-ETRKDAVRGE-KVSDALEEKTVEQEHFAYANKLEAKNAFKALLE 457
D ++D E E ++ +V G+ +S A ++ VE E YA K EAK AFK+LLE
Sbjct: 361 D---SNDGATAQNNEAENKEMSVNGKANLSPAGDKANVE-EPMVYATKQEAKAAFKSLLE 416
Query: 458 SANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARD 517
S NV SDWTW+Q L+ I++D+RYGALRTLGERK AFNEYLGQ+KK +AEERR + KKAR+
Sbjct: 417 SVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKARE 476
Query: 518 DYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQ 577
++ KMLEE EL+SS +WSKA+++FEND+RFKA++R RDR+D+FD+++ EL++KER KA
Sbjct: 477 EFVKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAA 536
Query: 578 EERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEK 637
EE ++ + +YRKFLE+CD+IKA TQWRK+QDRLE D+RCS L+K+DRL F+EY+ DLEK
Sbjct: 537 EEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEK 596
Query: 638 EEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVA 697
EEEE ++++KE + + ERKNRD FR L+E VA G LTAKT W DYCI++KD P Y AVA
Sbjct: 597 EEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVA 656
Query: 698 SNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATS 757
SNTSGSTPKDLFEDV EEL+KQ+ EDK+ +KDA+K RKI++ S+W FEDFK+++ ED ++
Sbjct: 657 SNTSGSTPKDLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLST 716
Query: 758 PPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLL 817
ISD+NLKLI+DDL+ +VKEKEEKEA+K +RL +EF +LL + KEI+ S WE+ +QL+
Sbjct: 717 QQISDINLKLIYDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLV 776
Query: 818 EGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGR 877
E SQE+ SIGDES+ +G+F+E++T L+E+AK+ ERKR EEK ++EKER+E+++RK K
Sbjct: 777 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKE 836
Query: 878 DKERAREREKEDHS------KKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHD--- 928
+E+ REREKE + DG + D KR GKD D+KHR+RH + D
Sbjct: 837 RREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDV 896
Query: 929 -SLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLE 987
S ++ + K+ +H +DRKK R+ A++PESE+E+RHKR ++++ SR++G+ E LE
Sbjct: 897 SSDRDDRDESKKSSRKHGNDRKKSRKHANSPESESENRHKRQKKES---SRRSGNDE-LE 952
Query: 988 DGEYG 992
DGE G
Sbjct: 953 DGEVG 957
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 210/679 (30%), Positives = 341/679 (50%), Gaps = 53/679 (7%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 259
W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+ YYYN TK
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK 205
Query: 260 QSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVI 319
+S+W+ P EL+ ++G Q+ + S +++KA S+ T
Sbjct: 206 ESRWAKPKELE---------DLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTAST 256
Query: 320 VSSPVAVVPIIAAS--------ETQPALVSVPSTSPVITSSVVANADG-FPKTVDAIAPM 370
P +P ++ A + + + TS+ N G P +AP
Sbjct: 257 APVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVP-----VAPE 311
Query: 371 IDVSSSIGEAV-TDNTVA---EAKNNLSNMSA-SDLVGASDKVPPPVTEETRKDAVRGEK 425
+V+S + AV +NTV E + L+N +A DL G ++ T ++ + E
Sbjct: 312 PEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQDLSG-------DISSNTGEEPAKQET 364
Query: 426 VSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRY 480
VSD +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY
Sbjct: 365 VSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 424
Query: 481 GALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVT 540
AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+ KA
Sbjct: 425 SALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQ 484
Query: 541 MFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN 600
MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++ + +
Sbjct: 485 MFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYS 543
Query: 601 TQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTE 654
T W + Q L DE +DK D L F+E++ LEKEEEE+++ + +
Sbjct: 544 TTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQ 603
Query: 655 RKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 714
RKNR+ F+ ++ G L + ++W + + + + GST DLF+ VE
Sbjct: 604 RKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFKFYVE 662
Query: 715 ELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLI 774
+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+ LL
Sbjct: 663 DLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLE 722
Query: 775 KVKEKEEKEAKKR----KRLEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDE 829
K + +E + K+ KR E F +L + I + WE+ R+ F I E
Sbjct: 723 KAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE 782
Query: 830 SICRGVFDEFVTQLKEQAK 848
S + +F +F+ L+ + +
Sbjct: 783 SERKRIFKDFMHVLEHECQ 801
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 204/683 (29%), Positives = 343/683 (50%), Gaps = 41/683 (6%)
Query: 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 251
+A G ++ W EH S DGR YY+N T+ STW+KP +L T E+ + WKE+ S G+
Sbjct: 138 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKP 197
Query: 252 YYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADI 311
YYYN TK+S+W+ P EL+ ++G Q+ S + S +++KA S+
Sbjct: 198 YYYNSQTKESRWAKPKELE---------DLEGYQNTIVAGSLITKSNLHAMIKAEESSKQ 248
Query: 312 SSSTVEVIVSSPVAVVPIIAAS-----ETQPALVSVPSTSPVITSSVVANADGFPKTVDA 366
T P +P ++ + + + + ++ + TV
Sbjct: 249 EECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSG 308
Query: 367 IAPMI---DVSSSIGEAV-TDNTVAEAKNNLSNMSASDLV-GASDKVPPPVTEETRKDAV 421
P++ +V+S + V +NTV + + ++++ + S +V EET K
Sbjct: 309 TVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQ-- 366
Query: 422 RGEKVSDALEEKTVEQEH-----FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIIN 476
E V+D +K E+ + + K EAK AFK LL+ V S+ +W+QA++ IIN
Sbjct: 367 --ETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 424
Query: 477 DRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWS 536
D RY AL L E+K AFN Y Q +K++ EE R K K+A++ +++ LE ++TS+TR+
Sbjct: 425 DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYK 484
Query: 537 KAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDF 596
KA MF E + A+ ERDR ++++D L L +KE+ +A++ RKRN + L++
Sbjct: 485 KAEQMFGEMEVWNAIS-ERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN 543
Query: 597 IKANTQWRKVQDRL------EADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEEL 650
+ +T W + Q L DE +DK D L F+E++ LEKEEEE+++
Sbjct: 544 VTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRE 603
Query: 651 SKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFE 710
+ +RKNR+ F+ ++ G L + ++W + + + + GST DLF+
Sbjct: 604 RRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ-PGSTALDLFK 662
Query: 711 DVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFD 770
VE+L+ ++ ++K IKD +K + + TFEDF A + S + N+KL F+
Sbjct: 663 FYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFN 722
Query: 771 DLLIKVKEKEEKEAKKR----KRLEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSS 825
LL K + +E + K+ KR E F +L + I + WE+ R+ F
Sbjct: 723 SLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFED 782
Query: 826 IGDESICRGVFDEFVTQLKEQAK 848
I ES + +F +F+ L+ + +
Sbjct: 783 ITLESERKRIFKDFMHVLEHECQ 805
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 237/442 (53%), Gaps = 14/442 (3%)
Query: 440 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 499
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 500 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 559
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F + E + A+ ER+RK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVW-AVVPERERKE 389
Query: 560 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 613
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 614 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 673
++ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 QQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQ 509
Query: 674 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 733
L + + W + V + A GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRF-ANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 734 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV----KEKEEKEAKKRKR 789
R + FEDF + D + + N+KL F+ LL K E+E++EA++ +R
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARETEREKEEARRMRR 628
Query: 790 LEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAK 848
E F +L +V + + WE R+ F I ES +F EF+ Q+ EQ +
Sbjct: 629 REAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFL-QVLEQTE 687
Query: 849 DYERKRKEEKAKREKEREERDR 870
K K R+ ++ R R
Sbjct: 688 CQHLHTKGRKHGRKGKKHHRKR 709
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 166 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 225
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 226 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269
L + E + WKE+ S G+ YYYN +++S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
Score = 40.0 bits (92), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 241 WKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270
W E +PDGR YYYN KQS W P LK
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLK 127
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/662 (24%), Positives = 304/662 (45%), Gaps = 104/662 (15%)
Query: 237 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL------KLAR-EQAEKASIKGTQSETS 289
++DW E + D R YYYN VT++S W P+EL KL++ E A+ G + +
Sbjct: 32 VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN 91
Query: 290 PNSQTSISFPSSVVKAPSSADISSSTVEVIVSSP----VAVVPIIAASETQPALVSVPST 345
N++ S+ DI +V P A+ I +++ +PA+ S+
Sbjct: 92 VNTRESV------------WDIPDEYKAALVDEPEQQKKALSSKIKSNDNKPAVQSIQRH 139
Query: 346 SPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGAS 405
P + + P + P D S I + T+ + V
Sbjct: 140 GPDVAA---------PSS----QPAKDQSQQISQGSHKRTI-------------NFVQQK 173
Query: 406 DKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDW 465
DK R ++ +D +H Y A+ AF L+S NV W
Sbjct: 174 DK--------------RQKRSNDY--------QHENYDTYEAAERAFFKFLDSHNVNPSW 211
Query: 466 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEE 525
TW+Q +R + + + Y ++ RK AF+ Y+ ++ + ++ K R ++ +ML+
Sbjct: 212 TWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRKEFIEMLKS 271
Query: 526 SVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNII 585
S ++ S T W F + F A E +++ +F ++ +L + E+ ++ RK +
Sbjct: 272 SDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALD 331
Query: 586 EYRKFLESCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEE 639
++ L + +F + T+W Q + + D R +R L K+D L F++++ LE+E
Sbjct: 332 DFCSLLRNMNF-EPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHLEREY 390
Query: 640 EEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASN 699
++ QK+E + ERKNRD FR L++ +T +T W++ +KD P Y+ +
Sbjct: 391 ILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQ 450
Query: 700 TSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPP 759
SGSTP DLF D + +L+ ++E + + D +++ +I++ T + A + E
Sbjct: 451 -SGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDRE 509
Query: 760 ISDVNLKLIFDDLLIKVKEK------EEKEAKKRKRLEDEFFDLLCSVKE----ISATST 809
S+ + + ++++ ++++K EEK A +R R+ + +L ++K ISA ++
Sbjct: 510 ESEAVTEDLIEEVVNRLRDKAIHKKAEEKRADER-RIRRKIDNLRSAIKYLKPPISADAS 568
Query: 810 WENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERD 869
++ R L+ EF+++ E FD+++ +L+E KRE E++ ++
Sbjct: 569 YDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLRE--------------KRELEKQYQN 614
Query: 870 RR 871
RR
Sbjct: 615 RR 616
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 194/451 (43%), Gaps = 67/451 (14%)
Query: 164 VSSTPVQPTD-EQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTW 222
+S+ P Q ++ ++ T++ P+ P ++ V +DW E + D R YY+N TR S W
Sbjct: 1 MSAPPWQTSEYDETEGFTSNQEGPSAAP--SKTVASDWHEVKTEDSRVYYYNSVTRKSVW 58
Query: 223 DKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR----EQAEK 278
+KP ELM E+ + WKE+ + DG+KY+YN T++S W +PDE K A EQ +K
Sbjct: 59 EKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKK 118
Query: 279 ASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPII-------- 330
A +S + + SI V APSS + ++ S + +
Sbjct: 119 ALSSKIKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKRTINFVQQKDKRQK 178
Query: 331 --------------AASETQPALVSVPSTSPVIT--SSV--VANADGFPKTVDAIAPMID 372
AA + + +P T +V + +A G+ D
Sbjct: 179 RSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238
Query: 373 VSSSIGEAVTDNTVAEAKNNLSNMSAS--DLVGASDKVPPPVTEETRKDAVRGEKVSDAL 430
+ I +TD + AE KN ++ + +++ +SDK+ T K+ +A
Sbjct: 239 FDAYILNYLTDQSDAE-KNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNAT 297
Query: 431 EEKTVEQE-HFAYANKL-------------EAKNAFKALLESANVGSDWTWDQALRAIIN 476
+T +Q+ F Y KL EA + F +LL + N W A
Sbjct: 298 SSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQ 357
Query: 477 DRRY---GALRTLG--ERKTAFN--------EYLGQKKKQDAEERRLKLKKARDDYKKML 523
D RY ++ L + AF EY+ K+KQ E+ R++ +K RD ++ +L
Sbjct: 358 DPRYTRNSNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIE-RKNRDAFRALL 416
Query: 524 EE---SVELTSSTRWSKAVTMFENDERFKAL 551
++ ++T T+W + + ++D R+ L
Sbjct: 417 QDLRVQKKITLRTKWKELYPIIKDDPRYLNL 447
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 235/441 (53%), Gaps = 21/441 (4%)
Query: 440 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQ 499
+++N+ +AK AFK LL V S+ +W+QA++ ++ D RY AL L E+K AFN Y Q
Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQ 330
Query: 500 KKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKD 559
++K++ EE RL+ K+A+ + LE+ +TS+TR+ +A F E + A+ ERDRK+
Sbjct: 331 REKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVW-AVVPERDRKE 389
Query: 560 MFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRL------EAD 613
++DD L L +KE+ +A++ R+RNI + L+ + T W + Q L D
Sbjct: 390 VYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQD 449
Query: 614 ERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGT 673
+ +DK D L F+E++ LE+EEEE+R+ + + +RKNR+ F+ ++ G
Sbjct: 450 HQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQ 509
Query: 674 LTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 733
L + + W + V + A GSTP DLF+ VEEL+ +F ++K IKD +K
Sbjct: 510 LHSMSTWMELYPAVSTDVRF-ANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKD 568
Query: 734 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL----IKVKEKEEKEAKKRKR 789
R + FEDF + D + + N+KL F+ LL + +E+E++EA++ +R
Sbjct: 569 RGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRR 628
Query: 790 LEDEFFDLL-CSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKE--- 845
E F +L +V + + WE R+ F I ES +F EF+ L++
Sbjct: 629 REAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTEC 688
Query: 846 -----QAKDYERKRKEEKAKR 861
+ + + RK K+ KR
Sbjct: 689 QHLHTKGRKHGRKGKKHHHKR 709
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 166 STPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 225
+ PV A T +SA T P++ W EH + DGR YY+N + S W+KP
Sbjct: 70 AVPVTAATAPGADTASSAVAGTGPPRAL------WSEHVAPDGRIYYYNADDKQSVWEKP 123
Query: 226 FELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269
L + E + WKE+ S G+ YYYN +K+S+W+ P +L
Sbjct: 124 SVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 151/576 (26%), Positives = 276/576 (47%), Gaps = 84/576 (14%)
Query: 239 TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE-----QAEKASIKGTQSETS-PNS 292
+DW T+ G YY+N+VTKQ+ W PD LK E Q ++ K S+ P
Sbjct: 82 SDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYY 141
Query: 293 QTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSS 352
+++ + VK P +I+ E +PA +
Sbjct: 142 YNTLTKKTQWVK-PDGEEITKG-------------------EQKPAAKAA---------- 171
Query: 353 VVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPV 412
TVD +A V E+ D + ++ N+ P+
Sbjct: 172 ----------TVDTVALAAAVQQKKAESDLDKAMKATLASMPNV--------------PL 207
Query: 413 TEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALR 472
E +++ E V+D +E K + E F + + + ++ WDQA++
Sbjct: 208 PSEKKEE----ESVNDEVELKKRQSERF--------RELLRDKYNDGKITTNCNWDQAVK 255
Query: 473 AIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSS 532
I ND R+ L + E+K FN + Q+ K++ +E+RL +KK+++D +K L+E ++ S
Sbjct: 256 WIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKES 315
Query: 533 TRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE 592
++ KA +F + + A+ E DRK++F D +D + ++++ K +E+RKR+I + L+
Sbjct: 316 LKYQKASDIFSKEPLWIAVNDE-DRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQ 374
Query: 593 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQ 646
S + I T W + Q L + + + +DK D L +F++++ EKE +E+++ +
Sbjct: 375 SMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQE 434
Query: 647 KEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPK 706
++ L + +RK R+E+R L+E+ G LT+ + W + + + GS+P
Sbjct: 435 EKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTS-LFPIISTDTRFELMLFQPGSSPL 493
Query: 707 DLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLK 766
DLF+ VE+L++Q+ ED+ IK+ + + + +T + +F V+ + N+K
Sbjct: 494 DLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMK 553
Query: 767 LIFDDLLIKVKEK---EEKEAKKRK-RLEDEFFDLL 798
L ++ L+ K + K EEKE+ +RK RLE EF +LL
Sbjct: 554 LCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLL 589
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 123 SYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTAS 182
S+ P L+ NI + +P + + Q V + Q S V P +AA T
Sbjct: 7 SFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQ--VPLLQMPTHSV-VAP---HVAAPTRP 60
Query: 183 APL---PTL---QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD 236
+P+ P + + S+ V++DW HT+ G YY N+ T+ ++W KP L T +ER+
Sbjct: 61 SPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERST 120
Query: 237 AST----DWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNS 292
+ WKEF S DG+ YYYN +TK+++W PD ++ + + + A+ T
Sbjct: 121 SGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVD------ 174
Query: 293 QTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVP 328
+++ ++V + + +D+ + + S P +P
Sbjct: 175 --TVALAAAVQQKKAESDLDKAMKATLASMPNVPLP 208
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 141/314 (44%), Gaps = 60/314 (19%)
Query: 425 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 483
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 704 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 763
Query: 484 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 543
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 764 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 822
Query: 544 NDERFKALERERDRKDMFDDHLDEL----------------------------------- 568
+D R+KA++ R+D+F +++++
Sbjct: 823 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 882
Query: 569 --KQKERAKAQEERKRNIIEYRKFLESCDFIKA-NTQWRKVQDRLEADERCSRLDKMDRL 625
K+ +R + Q +R+ I ++ L D +++ + W + L D R
Sbjct: 883 QTKEIDREREQHKREEAIQNFKALL--SDMVRSSDVSWSDTRRTLRKDHRW--------- 931
Query: 626 EIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCI 685
E + LE+EE+E K+ E + +K R+ FR+L++ A+ TLT + W++
Sbjct: 932 ----ESGSLLEREEKE--KLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKK 982
Query: 686 KVKDSPPYMAVASN 699
+K+ P + +S+
Sbjct: 983 IIKEDPRCIKFSSS 996
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 63 PAPSHVPPPPQVMSLPNAQPSNHIP--PSSLPRPNVQALSSYPP--------GLGGLGRP 112
PAP+ P V ++P P P P S+P+P A+ ++PP L G+ P
Sbjct: 322 PAPTATP----VQTVPQPHPQTLPPAVPHSVPQPTT-AIPAFPPVMVPPFRVPLPGMPIP 376
Query: 113 VAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPT 172
+ S + + G M+ VP I Q+ ++ S +T++
Sbjct: 377 LPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHP--QVAIAASPATLA------- 427
Query: 173 DEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKP 225
AT S +W E+ +ADG+ YY+N RT STW+KP
Sbjct: 428 ----GATAVS----------------EWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 447 EAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYLGQKKKQD 504
EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 898 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI------- 950
Query: 505 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER---FKALERERDRKDMF 561
KK R+ ++++L+E+ +T ++ W + + + D R F + +R++ R+ F
Sbjct: 951 ----EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--F 1004
Query: 562 DDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK-VQDRLEADERCSR 618
++++ +++ + R +++ KF+ S I+ + Q K V+ L+ D+R
Sbjct: 1005 EEYI-----RDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLV 1059
Query: 619 LDKM--DRLEIFQEYLNDLEK 637
LD + +R ++ Y++DL++
Sbjct: 1060 LDCVPEERRKLIVAYVDDLDR 1080
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 743 TFEDFKASVLEDATSPPISDV-NLKLIFDDLLIKVKEKEEKEAKKR-KRLEDEFFDLLCS 800
TF +F A +D+ I + + + +F++ + ++KE++++K R ++++ +FF+LL S
Sbjct: 746 TFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-S 804
Query: 801 VKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQL-----KEQAKDYERKRK 855
+ + S W + +E + ++ S+ +F +++ ++ E+ K+ ER+ +
Sbjct: 805 NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQAR 864
Query: 856 EEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE--NDSKRSGK 913
E + RE+ERE + R ++ + +RE+E H +++ + ++ S S
Sbjct: 865 IEASLREREREVQKARS-----EQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWS 919
Query: 914 DNDKKHRKRHQSAHDSLDEN-EKDRSKNPHRHNSDRKK 950
D + RK H+ SL E EK++ N H +KK
Sbjct: 920 DTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 957
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 155/360 (43%), Gaps = 73/360 (20%)
Query: 505 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 563
A ER + +AR +K ML E +++ + W K + D R+ L ++RK +FD
Sbjct: 651 ARERAIVPLEARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQ 708
Query: 564 HLDELKQKERAKAQEERKRNII-----EYRKFLESCDFIKANTQWRKVQDRLEADERCSR 618
++ K RA+ + K+N I +++K +E F + + + D R
Sbjct: 709 YV-----KTRAEEERREKKNKIMQAKEDFKKMMEEAKF-NPRATFSEFAAKHAKDSRFKA 762
Query: 619 LDKM-DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAK 677
++KM DR +F E++ K+E+E K + E++ + +F +L+ L ++
Sbjct: 763 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKI-------KSDFFELLSNH----HLDSQ 811
Query: 678 TNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK-------TRIKDA 730
+ W KV+ P Y AV S S +DLF+ +E++ K +K RI+ +
Sbjct: 812 SRWSKVKDKVESDPRYKAV---DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEAS 868
Query: 731 VKLRKITLSSTWT------------------FEDFKASVLEDATSPPIS--DVNLKLIFD 770
++ R+ + + ++FKA + + S +S D L D
Sbjct: 869 LREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKD 928
Query: 771 ------DLLIKVKEKEEKEAKKRKRLE-------DEFFDLLCSVKEISATSTWENCRQLL 817
LL E+EEKE + +E + F LL I+ TSTW+ ++++
Sbjct: 929 HRWESGSLL----EREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKII 984
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 241 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 274
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 231 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 266
T+ A A ++W E+ + DG+ YYYN T +S W P
Sbjct: 425 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 460
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKP 225
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 175 QMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIER 234
Q A A+AP+P T W + D R +++N TR+S WD+P +L I R
Sbjct: 519 QKAKPVATAPIPG----------TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGR 565
Query: 235 ADA 237
AD
Sbjct: 566 ADV 568
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 141/314 (44%), Gaps = 60/314 (19%)
Query: 425 KVSDALEEKTVEQEHFAYANK-LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL 483
+V D + E+E NK ++AK FK ++E A T+ + D R+ A+
Sbjct: 706 QVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAI 765
Query: 484 RTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFE 543
+ +R+ FNE++ +K++ E+ + + +K + D+ ++L L S +RWSK E
Sbjct: 766 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVE 824
Query: 544 NDERFKALERERDRKDMFDDHLDEL----------------------------------- 568
+D R+KA++ R+D+F +++++
Sbjct: 825 SDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSE 884
Query: 569 --KQKERAKAQEERKRNIIEYRKFLESCDFIKA-NTQWRKVQDRLEADERCSRLDKMDRL 625
K+ +R + Q +R+ I ++ L D +++ + W + L D R
Sbjct: 885 QTKEIDREREQHKREEAIQNFKALL--SDMVRSSDVSWSDTRRTLRKDHRW--------- 933
Query: 626 EIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCI 685
E + LE+EE+E K+ E + +K R+ FR+L++ A+ TLT + W++
Sbjct: 934 ----ESGSLLEREEKE--KLFNEHIEALTKKKREHFRQLLDETSAI-TLT--STWKEVKK 984
Query: 686 KVKDSPPYMAVASN 699
+K+ P + +S+
Sbjct: 985 IIKEDPRCIKFSSS 998
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 100/201 (49%), Gaps = 28/201 (13%)
Query: 447 EAKNAFKALLESANVGSDWTWDQALRAIINDRRY--GALRTLGERKTAFNEYLGQKKKQD 504
EA FKALL SD +W R + D R+ G+L E++ FNE++
Sbjct: 900 EAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHI------- 952
Query: 505 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDER---FKALERERDRKDMF 561
KK R+ ++++L+E+ +T ++ W + + + D R F + +R++ R+ F
Sbjct: 953 ----EALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--F 1006
Query: 562 DDHLDELKQKERAKAQEERKRNIIEYRKFL--ESCDFIKANTQWRK-VQDRLEADERCSR 618
++++ +++ + R +++ KF+ S I+ + Q K V+ L+ D+R
Sbjct: 1007 EEYI-----RDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLV 1061
Query: 619 LDKM--DRLEIFQEYLNDLEK 637
LD + +R ++ Y++DL++
Sbjct: 1062 LDCVPEERRKLIVAYVDDLDR 1082
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 743 TFEDFKASVLEDATSPPISDV-NLKLIFDDLLIKVKEKEEKEAKKR-KRLEDEFFDLLCS 800
TF +F A +D+ I + + + +F++ + ++KE++++K R ++++ +FF+LL S
Sbjct: 748 TFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELL-S 806
Query: 801 VKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQL-----KEQAKDYERKRK 855
+ + S W + +E + ++ S+ +F +++ ++ E+ K+ ER+ +
Sbjct: 807 NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELERQAR 866
Query: 856 EEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE--NDSKRSGK 913
E + RE+ERE + R ++ + +RE+E H +++ + ++ S S
Sbjct: 867 IEASLREREREVQKARS-----EQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWS 921
Query: 914 DNDKKHRKRHQSAHDSLDEN-EKDRSKNPHRHNSDRKK 950
D + RK H+ SL E EK++ N H +KK
Sbjct: 922 DTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKK 959
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 60/184 (32%)
Query: 63 PAPSHVP----PPPQVMSLPNAQPSN--------------HIPPSSLPRPNVQALSSYPP 104
PAP+ P P P +LP A P + +PP +P P + P
Sbjct: 324 PAPTATPVQTVPQPHPQTLPPAVPHSVPQPAAAIPAFPPVMVPPFRVPLPGM------PI 377
Query: 105 GLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTV 164
L G+ S + + + G M+ VP I Q+ ++ S +T+
Sbjct: 378 PLPGVAMMQIVSCPYV-------KTVATTKTGVLPGMAPPIVPMIHP--QVAIAASPATL 428
Query: 165 SSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDK 224
+ AT S +W E+ +ADG+ YY+N RT STW+K
Sbjct: 429 A-----------GATAVS----------------EWTEYKTADGKTYYYNNRTLESTWEK 461
Query: 225 PFEL 228
P EL
Sbjct: 462 PQEL 465
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 231 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270
T+ A A ++W E+ + DG+ YYYN T +S W P ELK
Sbjct: 427 TLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 466
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 73/360 (20%)
Query: 505 AEERRLKLKKAR-DDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDD 563
A ER + +AR +K ML E +++ + W K + D R+ L ++RK +FD
Sbjct: 653 ARERAIVPLEARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQ 710
Query: 564 HLDELKQKERAKAQEERKRNII-----EYRKFLESCDFIKANTQWRKVQDRLEADERCSR 618
++ K RA+ + K+N I +++K +E F + + + D R
Sbjct: 711 YV-----KTRAEEERREKKNKIMQAKEDFKKMMEEAKF-NPRATFSEFAAKHAKDSRFKA 764
Query: 619 LDKM-DRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAK 677
++KM DR +F E++ K+E+E K + E++ + +F +L+ + L ++
Sbjct: 765 IEKMKDREALFNEFVAAARKKEKEDSKTRGEKI-------KSDFFELL----SNHHLDSQ 813
Query: 678 TNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK-------TRIKDA 730
+ W KV+ P Y AV S S +DLF+ +E++ K +K RI+ +
Sbjct: 814 SRWSKVKDKVESDPRYKAV---DSSSMREDLFKQYIEKIAKNLDSEKEKELERQARIEAS 870
Query: 731 VKLRKITLSSTWT------------------FEDFKASVLEDATSPPIS--DVNLKLIFD 770
++ R+ + + ++FKA + + S +S D L D
Sbjct: 871 LREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKD 930
Query: 771 ------DLLIKVKEKEEKEAKKRKRLE-------DEFFDLLCSVKEISATSTWENCRQLL 817
LL E+EEKE + +E + F LL I+ TSTW+ ++++
Sbjct: 931 HRWESGSLL----EREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKII 986
Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 241 WKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 274
W E +PDG+ YYYN T++S W+ PD +K+ ++
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQ 170
Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKP 225
W E+ + DG+ YY+N RTR S W KP
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKP 162
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 175 QMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIER 234
Q A A+ P+P T W + D R +++N TR+S WD+P +L I R
Sbjct: 521 QKAKPVATTPIPG----------TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL---IGR 567
Query: 235 ADA 237
AD
Sbjct: 568 ADV 570
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 110/280 (39%), Gaps = 55/280 (19%)
Query: 15 VPHQPPMVGSMDPPRGQGGLIMNAGF----PSQPLQPPF----RPLMHPLPARPGPPAPS 66
+P PM+ + P G+ G + G P+ P PF RP M PA+ P
Sbjct: 82 IPQASPMLANA--PFGRPGTLAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQMNPGIHP 139
Query: 67 HVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGR-PVAASYTFAPSSYG 125
H+ PP SLP Q + PP +GG+ R P + T P SY
Sbjct: 140 HMYPP--YHSLPGTP---------------QGMWLQPPSMGGIPRAPFLSHPTTFPGSYP 182
Query: 126 QPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPL 185
P I P S H S G +G V + P + D ++ + L
Sbjct: 183 FPVR----GISPNLPYSGSHPLGASPMGSVG------NVHALPGRQPD--ISPGRKTEEL 230
Query: 186 PTLQPKSAE---GVQTD-WKEHTSADGRRYYFNKRTRVSTWDKP-----------FELMT 230
+ ++ G + D W H S G YY+N T ST++KP + +
Sbjct: 231 SGIDDRAGSQLVGNRLDAWTAHKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIP 290
Query: 231 TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270
+ TDW ++ DG+KYYYN TK S W +P E+K
Sbjct: 291 VSMESLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVK 330
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 503 QDAEERRLKL--KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERE---RDR 557
Q+ E R K+ K+A Y+ +L E + ++ W+++ + E D + +A + D+
Sbjct: 680 QEVERVRQKIRRKEASSSYQALLVEKIRDPEAS-WTESKPILERDPQKRASNPDLEPADK 738
Query: 558 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS 617
+ +F DH+ L ++ + + L++ D A W + L+ D R S
Sbjct: 739 EKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGKTALNSWSTAKQVLKPDIRYS 798
Query: 618 RLDKMDRLEIFQEYLNDLEK-------EEEEQR 643
++ + DR +++ Y+ D+ + +EE+QR
Sbjct: 799 KMPRQDREVVWRRYVEDISRKQRHENYQEEKQR 831
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 259
WKE A GR YY+N T+ STW+KP EL++ E WK + DG+ YYYN T+
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTR 63
Query: 260 QSKWSLP 266
++ W++P
Sbjct: 64 ETSWTIP 70
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 105/492 (21%), Positives = 217/492 (44%), Gaps = 65/492 (13%)
Query: 402 VGASDKVPPPVTEETRKDA----VRGEKVSDALEEK-----TVEQEHFAYAN-------- 444
+ A +K P+ E+ V G +++ EK T+ +E YAN
Sbjct: 69 IPAFEKKVEPIAEQKHDTVSHAQVNGNRIALTAGEKQEPGRTINEEESQYANNSKLLNVR 128
Query: 445 ---KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRT--LGERKTAFNEYLG 498
K EA+ F +L+ V S W++ + + + D RY + L +K F +YL
Sbjct: 129 RRTKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLW-KKEMFEKYLS 187
Query: 499 QKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-ALERERDR 557
+ + + K ++ ++KML+ + + TRW A + ++ +K ++ E+ +
Sbjct: 188 NRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTK 247
Query: 558 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKAN---TQWRKVQD------ 608
+ F D++D L ++ ++ + + + E R++L ++ W+++ +
Sbjct: 248 RQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITTSSSETFITWQQLLNHYVFDK 307
Query: 609 --RLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKT--ERKNRDEFRKL 664
R A+ L D L + + +N +E + Q K+ + L +R RD F+ L
Sbjct: 308 SKRYMANRHFKVLTHEDVLNEYLKIVNTIEN--DLQNKLNELRLRNYTRDRIARDNFKSL 365
Query: 665 MEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDK 724
+ +V + + A T W D +K P ++ + +GS+ DLF D V+E + +
Sbjct: 366 LR-EVPIK-IKANTRWSDIYPHIKSDPRFLHMLGR-NGSSCLDLFLDFVDEQRMYIFAQR 422
Query: 725 TRIKDAVKLRKITLSSTW--------TFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV 776
+ + + I + W T ++ + + D + ++ LI D L+ +
Sbjct: 423 SIAQQTL----IDQNFEWNDADSDEITKQNIEKVLENDRKFDKVDKEDISLIVDGLIKQR 478
Query: 777 KEKEEKEAKKRKRLEDE---FFDLLCSVKEISAT-----STWENCRQLLEGSQEFSSIGD 828
EK +++ + +R+ ++ +F LL + + T STW+ + L S E+ ++GD
Sbjct: 479 NEKIQQKLQNERRILEQKKHYFWLLLQ-RTYTKTGKPKPSTWDLASKELGESLEYKALGD 537
Query: 829 E-SICRGVFDEF 839
E +I R +F++F
Sbjct: 538 EDNIRRQIFEDF 549
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 452 FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 511
F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +ER+ K
Sbjct: 461 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKERKSK 519
Query: 512 LKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 571
L A++++KK+LEES +++ T + + D+RF+ +++ +D++ F+ + LK++
Sbjct: 520 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKR 578
Query: 572 ERAKAQEERK 581
++ RK
Sbjct: 579 DKENRLRLRK 588
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 446 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 505
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 521 LLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 579
Query: 506 EERRLKLKKAR 516
+E RL+L+K R
Sbjct: 580 KENRLRLRKMR 590
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 259
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAIWVEGLSEDGYTYYYNTETG 186
Query: 260 QSKWSLPDEL 269
+SKW PD+
Sbjct: 187 ESKWEKPDDF 196
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 259
W E +ADG YY++ T S W+KP +++ A W E S DG YYYN T
Sbjct: 129 WVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAVWVEGLSEDGYTYYYNTETG 188
Query: 260 QSKWSLPDEL 269
+SKW P++
Sbjct: 189 ESKWEKPEDF 198
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTK 259
W E +++G YY++ + S W+KP +++ T W E S DG YYYN T
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETG 187
Query: 260 QSKWSLPDEL 269
+S+W PD+
Sbjct: 188 ESRWEKPDDF 197
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 77/130 (59%), Gaps = 2/130 (1%)
Query: 452 FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLK 511
F+ +L V + TW++ L I+ D RY L + ERK F +++ + K++ +E++ K
Sbjct: 457 FRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNS-EERKQIFEQFVKTRIKEEYKEKKSK 515
Query: 512 LKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 571
L A++++KK+LEES +++ T + + + D+RF+ +++ +D++ F+ + LK++
Sbjct: 516 LLLAKEEFKKLLEES-KVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKR 574
Query: 572 ERAKAQEERK 581
++ RK
Sbjct: 575 DKENRLRLRK 584
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 446 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDA 505
L AK FK LLE + V T+ + D+R+ ++ +++ FN+++ KK+D
Sbjct: 517 LLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILKKRD- 575
Query: 506 EERRLKLKKAR 516
+E RL+L+K R
Sbjct: 576 KENRLRLRKMR 586
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 199 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT 258
+W + S +G YY+N +T S W+KP + + + W E S DG YYYN T
Sbjct: 139 EWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNSKTSHTGSVWVEGVSEDGHTYYYNTQT 198
Query: 259 KQSKWSLPD 267
S W PD
Sbjct: 199 GVSTWEKPD 207
>sp|Q5U4Q0|WAC_XENTR WW domain-containing adapter protein with coiled-coil OS=Xenopus
tropicalis GN=wac PE=2 SV=1
Length = 628
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 199 DWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKY 252
DW EH S+ G++YY+N RT VS W+KP E + +R ++ + P R Y
Sbjct: 128 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKETSKVAVNSFPKDRDY 181
>sp|Q7ZUK7|WAC_DANRE WW domain-containing adapter protein with coiled-coil OS=Danio
rerio GN=waca PE=2 SV=1
Length = 558
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 199 DWKEHTSADGRRYYFNKRTRVSTWDKPFELM 229
DW EH S+ G++YY+N RT VS W+KP E +
Sbjct: 125 DWSEHISSSGKKYYYNCRTEVSQWEKPKEWL 155
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 241 WKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269
W E TSPDG KYYYN +T +SKW P+E+
Sbjct: 597 WTEHTSPDGFKYYYNGLTGESKWEKPEEM 625
>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster
GN=Su(dx) PE=1 SV=1
Length = 949
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 155 LGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFN 214
+G+ VSQST QP D++ PLP W+ GRRYY +
Sbjct: 343 VGLPVSQSTDPQLQTQPADDE--------PLPA-----------GWEIRLDQYGRRYYVD 383
Query: 215 KRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLARE 274
TR + W+KP L W+ GR YY + T+++ W P+ +L
Sbjct: 384 HNTRSTYWEKPTPL---------PPGWEIRKDGRGRVYYVDHNTRKTTWQRPNSERLMHF 434
Query: 275 Q 275
Q
Sbjct: 435 Q 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,072,708
Number of Sequences: 539616
Number of extensions: 18036244
Number of successful extensions: 206253
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 4416
Number of HSP's that attempted gapping in prelim test: 109705
Number of HSP's gapped (non-prelim): 52004
length of query: 996
length of database: 191,569,459
effective HSP length: 127
effective length of query: 869
effective length of database: 123,038,227
effective search space: 106920219263
effective search space used: 106920219263
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)