Query 001916
Match_columns 996
No_of_seqs 344 out of 1109
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 12:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5104 PRP40 Splicing factor 100.0 4.5E-71 9.9E-76 602.0 35.4 526 196-841 13-558 (590)
2 KOG0155 Transcription factor C 100.0 1.8E-53 4E-58 473.1 37.0 344 443-808 239-613 (617)
3 KOG0152 Spliceosomal protein F 100.0 3.8E-53 8.3E-58 486.8 20.1 414 440-856 20-438 (463)
4 KOG0155 Transcription factor C 100.0 3.1E-36 6.7E-41 336.0 32.5 292 399-715 248-590 (617)
5 COG5104 PRP40 Splicing factor 99.9 4.9E-22 1.1E-26 218.8 25.2 196 448-644 215-429 (590)
6 KOG0152 Spliceosomal protein F 99.7 1.1E-16 2.4E-21 185.6 11.5 352 402-778 35-427 (463)
7 PF01846 FF: FF domain; Inter 99.1 7.2E-11 1.6E-15 97.5 5.8 50 447-496 1-51 (51)
8 smart00441 FF Contains two con 99.0 4.3E-10 9.4E-15 94.2 5.3 52 447-498 2-54 (55)
9 PF01846 FF: FF domain; Inter 98.9 2.9E-09 6.2E-14 88.0 6.3 50 514-564 1-51 (51)
10 smart00441 FF Contains two con 98.9 4.1E-09 8.9E-14 88.3 6.0 53 514-566 2-54 (55)
11 PF00397 WW: WW domain; Inter 98.5 8.8E-08 1.9E-12 71.3 3.6 30 237-266 1-31 (31)
12 PF00397 WW: WW domain; Inter 98.5 8.3E-08 1.8E-12 71.4 2.4 29 197-225 2-31 (31)
13 smart00456 WW Domain with 2 co 98.3 6.7E-07 1.5E-11 66.7 4.1 31 237-267 1-31 (32)
14 smart00456 WW Domain with 2 co 98.3 5.8E-07 1.3E-11 67.0 3.4 30 197-226 2-31 (32)
15 cd00201 WW Two conserved trypt 98.3 6.6E-07 1.4E-11 66.0 3.4 30 197-226 1-30 (31)
16 cd00201 WW Two conserved trypt 98.2 2.2E-06 4.7E-11 63.3 4.0 30 238-267 1-30 (31)
17 KOG1891 Proline binding protei 98.0 5.3E-06 1.1E-10 86.5 5.4 71 192-268 90-160 (271)
18 KOG4271 Rho-GTPase activating 98.0 0.0003 6.5E-09 86.0 19.1 230 448-725 54-314 (1100)
19 KOG4271 Rho-GTPase activating 97.9 0.00042 9E-09 84.8 18.9 203 491-726 39-277 (1100)
20 KOG1924 RhoA GTPase effector D 97.7 0.00016 3.6E-09 86.6 10.1 19 60-78 546-564 (1102)
21 KOG3259 Peptidyl-prolyl cis-tr 97.3 9.2E-05 2E-09 73.0 1.4 34 236-269 6-40 (163)
22 KOG1924 RhoA GTPase effector D 97.2 0.0013 2.9E-08 79.1 10.6 11 583-593 813-823 (1102)
23 KOG3259 Peptidyl-prolyl cis-tr 97.2 0.00016 3.6E-09 71.3 1.9 34 195-228 6-40 (163)
24 KOG4849 mRNA cleavage factor I 97.0 0.011 2.4E-07 65.8 13.3 13 101-113 303-315 (498)
25 KOG1984 Vesicle coat complex C 96.9 0.03 6.6E-07 69.0 17.8 16 834-849 989-1004(1007)
26 KOG0307 Vesicle coat complex C 96.7 0.049 1.1E-06 68.8 18.2 9 265-273 944-952 (1049)
27 KOG1984 Vesicle coat complex C 96.4 0.16 3.5E-06 62.9 18.9 17 554-570 640-656 (1007)
28 KOG1847 mRNA splicing factor [ 95.9 0.0081 1.8E-07 71.2 4.9 29 944-972 763-797 (878)
29 KOG4849 mRNA cleavage factor I 95.7 0.06 1.3E-06 60.2 10.2 17 7-23 216-232 (498)
30 KOG0940 Ubiquitin protein liga 94.6 0.033 7.2E-07 64.1 4.5 73 197-269 62-146 (358)
31 KOG1985 Vesicle coat complex C 94.3 0.74 1.6E-05 57.2 14.8 18 830-847 868-885 (887)
32 KOG0150 Spliceosomal protein F 94.3 0.03 6.6E-07 61.8 3.0 53 218-270 130-182 (336)
33 KOG0307 Vesicle coat complex C 94.1 2.3 5E-05 54.5 18.9 19 519-538 1013-1031(1049)
34 PHA03247 large tegument protei 93.3 5.8 0.00013 55.1 21.3 10 463-472 3003-3012(3151)
35 PHA03247 large tegument protei 92.8 5.6 0.00012 55.3 20.0 7 196-202 2851-2857(3151)
36 COG5180 PBP1 Protein interacti 92.3 1 2.2E-05 52.6 11.1 16 11-26 505-520 (654)
37 KOG3582 Mlx interactors and re 92.2 1.2 2.6E-05 54.2 12.0 12 47-58 414-425 (856)
38 KOG3209 WW domain-containing p 91.7 0.68 1.5E-05 56.5 9.2 74 195-268 222-300 (984)
39 KOG2893 Zn finger protein [Gen 91.7 6.2 0.00013 42.7 15.3 10 4-13 105-114 (341)
40 KOG0391 SNF2 family DNA-depend 91.2 4.2 9.2E-05 52.6 15.5 11 121-131 1864-1874(1958)
41 KOG2199 Signal transducing ada 90.8 0.79 1.7E-05 52.7 8.1 7 52-58 412-418 (462)
42 KOG2002 TPR-containing nuclear 90.6 11 0.00025 48.1 18.5 38 575-612 623-671 (1018)
43 KOG0144 RNA-binding protein CU 90.5 0.23 4.9E-06 57.4 3.6 32 197-228 452-483 (510)
44 KOG2893 Zn finger protein [Gen 89.9 7.4 0.00016 42.1 13.9 16 96-111 168-183 (341)
45 KOG4592 Uncharacterized conser 89.5 1 2.2E-05 54.2 8.0 12 204-215 297-308 (728)
46 KOG3209 WW domain-containing p 89.1 0.37 8E-06 58.6 4.1 38 236-273 222-259 (984)
47 KOG2002 TPR-containing nuclear 88.5 9.5 0.00021 48.8 15.6 17 485-501 357-373 (1018)
48 KOG0151 Predicted splicing reg 88.2 1.5 3.2E-05 53.7 8.2 32 450-481 321-353 (877)
49 KOG1985 Vesicle coat complex C 88.1 4.4 9.6E-05 50.7 12.2 9 8-16 4-12 (887)
50 PF05890 Ebp2: Eukaryotic rRNA 87.9 13 0.00029 41.6 15.1 115 657-795 33-150 (271)
51 PF03154 Atrophin-1: Atrophin- 87.9 29 0.00063 44.7 19.3 9 449-457 551-559 (982)
52 KOG0119 Splicing factor 1/bran 87.8 4 8.7E-05 48.4 11.1 23 11-33 397-420 (554)
53 KOG4264 Nucleo-cytoplasmic pro 87.7 8 0.00017 46.1 13.4 7 72-78 557-563 (694)
54 KOG2985 Uncharacterized conser 87.4 0.39 8.5E-06 51.9 2.6 16 939-954 243-258 (306)
55 KOG0150 Spliceosomal protein F 87.0 0.69 1.5E-05 51.5 4.3 40 192-231 145-184 (336)
56 KOG1923 Rac1 GTPase effector F 86.5 2.4 5.1E-05 52.5 8.7 28 833-860 716-743 (830)
57 KOG1847 mRNA splicing factor [ 85.5 1.9 4.2E-05 52.0 7.1 37 943-979 771-807 (878)
58 KOG3537 Adaptor protein NUMB [ 85.4 4.7 0.0001 47.1 9.9 11 103-113 444-454 (543)
59 KOG0391 SNF2 family DNA-depend 84.4 14 0.00031 48.2 14.1 17 71-87 1777-1793(1958)
60 PF09770 PAT1: Topoisomerase I 83.8 0.33 7.2E-06 62.1 0.0 13 556-568 601-613 (808)
61 KOG3895 Synaptic vesicle prote 83.8 6 0.00013 45.2 9.6 35 54-90 424-458 (488)
62 KOG0608 Warts/lats-like serine 83.7 13 0.00028 45.9 12.8 13 622-634 720-732 (1034)
63 KOG4368 Predicted RNA binding 83.2 3.4 7.4E-05 49.6 7.8 12 44-55 402-413 (757)
64 KOG3753 Circadian clock protei 83.1 4.7 0.0001 50.6 9.1 7 206-212 921-927 (1114)
65 KOG3598 Thyroid hormone recept 82.3 1.8 3.9E-05 56.4 5.4 43 8-58 1987-2029(2220)
66 KOG3600 Thyroid hormone recept 82.0 4.4 9.6E-05 52.2 8.5 34 114-148 1003-1038(2238)
67 KOG4368 Predicted RNA binding 81.4 20 0.00044 43.4 13.1 8 223-230 519-526 (757)
68 KOG2985 Uncharacterized conser 80.6 1.1 2.4E-05 48.5 2.4 26 936-961 243-269 (306)
69 KOG1891 Proline binding protei 80.4 1.3 2.9E-05 47.3 2.9 33 236-268 93-125 (271)
70 KOG4520 Predicted coiled-coil 80.0 0.88 1.9E-05 47.3 1.4 41 940-983 193-234 (238)
71 KOG3161 Predicted E3 ubiquitin 78.5 47 0.001 41.0 15.0 20 52-71 457-476 (861)
72 KOG1029 Endocytic adaptor prot 78.2 5.7 0.00012 49.3 7.5 12 10-21 82-93 (1118)
73 KOG3671 Actin regulatory prote 77.9 49 0.0011 39.7 14.7 9 146-154 452-460 (569)
74 KOG1676 K-homology type RNA bi 77.2 16 0.00034 44.6 10.8 19 16-34 395-413 (600)
75 COG5180 PBP1 Protein interacti 77.0 13 0.00027 44.0 9.5 7 97-103 585-591 (654)
76 KOG1923 Rac1 GTPase effector F 76.7 9.9 0.00021 47.4 9.1 17 622-638 620-636 (830)
77 PF03154 Atrophin-1: Atrophin- 76.5 1.1E+02 0.0025 39.6 18.2 8 677-684 759-766 (982)
78 KOG1029 Endocytic adaptor prot 75.5 27 0.00059 43.7 12.1 20 665-684 257-276 (1118)
79 PHA03378 EBNA-3B; Provisional 75.5 64 0.0014 40.1 15.0 16 97-112 739-754 (991)
80 KOG1016 Predicted DNA helicase 74.7 15 0.00031 46.1 9.6 22 67-88 1243-1265(1387)
81 KOG0608 Warts/lats-like serine 74.3 78 0.0017 39.5 15.3 10 707-716 729-738 (1034)
82 KOG1049 Polyadenylation factor 74.2 54 0.0012 39.8 14.0 40 445-485 488-528 (538)
83 KOG2375 Protein interacting wi 74.1 70 0.0015 40.6 15.4 7 103-109 644-650 (756)
84 PF09770 PAT1: Topoisomerase I 73.7 1.1 2.3E-05 57.5 0.0 7 227-233 360-366 (808)
85 KOG3794 CBF1-interacting corep 73.1 4 8.7E-05 47.0 4.3 13 948-960 359-371 (453)
86 KOG4274 Positive cofactor 2 (P 72.4 16 0.00034 44.2 9.0 12 3-14 205-216 (742)
87 KOG2072 Translation initiation 72.0 3E+02 0.0065 35.5 31.9 24 619-642 659-682 (988)
88 PF07960 CBP4: CBP4; InterPro 71.9 42 0.0009 33.6 10.4 48 490-552 34-81 (128)
89 PHA01929 putative scaffolding 70.2 17 0.00037 40.0 8.0 6 63-68 64-69 (306)
90 PF07223 DUF1421: Protein of u 67.2 1.2E+02 0.0026 35.5 14.5 9 124-132 188-196 (358)
91 KOG4307 RNA binding protein RB 67.0 40 0.00086 41.9 10.9 17 103-119 261-277 (944)
92 KOG3702 Nuclear polyadenylated 66.5 6.2 0.00013 48.4 4.2 40 916-955 132-173 (681)
93 KOG2138 Predicted RNA binding 65.8 3 6.6E-05 51.0 1.5 18 906-923 830-847 (883)
94 PF12905 Glyco_hydro_101: Endo 64.5 2.8 6E-05 49.0 0.8 25 246-270 380-404 (425)
95 PF03999 MAP65_ASE1: Microtubu 64.1 37 0.0008 42.5 10.6 27 703-729 322-348 (619)
96 PHA03378 EBNA-3B; Provisional 63.1 1.1E+02 0.0024 38.1 13.5 15 98-112 760-774 (991)
97 KOG4264 Nucleo-cytoplasmic pro 63.0 1.2E+02 0.0025 36.9 13.3 16 166-181 610-625 (694)
98 KOG4592 Uncharacterized conser 60.7 13 0.00027 45.4 5.3 24 249-273 301-325 (728)
99 PF04625 DEC-1_N: DEC-1 protei 58.3 32 0.00069 39.0 7.5 15 559-573 340-354 (407)
100 KOG4672 Uncharacterized conser 57.5 52 0.0011 38.6 9.2 12 444-455 471-482 (487)
101 KOG4676 Splicing factor, argin 57.3 12 0.00025 43.4 4.1 7 955-961 377-383 (479)
102 KOG3161 Predicted E3 ubiquitin 54.2 88 0.0019 38.7 10.7 12 101-112 532-543 (861)
103 KOG0144 RNA-binding protein CU 54.2 10 0.00023 44.4 3.1 33 238-270 452-484 (510)
104 KOG0163 Myosin class VI heavy 51.0 4E+02 0.0087 34.0 15.5 13 767-779 903-915 (1259)
105 PRK14959 DNA polymerase III su 50.0 92 0.002 39.1 10.5 10 24-33 377-386 (624)
106 KOG4676 Splicing factor, argin 49.8 11 0.00024 43.6 2.4 7 452-458 96-102 (479)
107 PF04625 DEC-1_N: DEC-1 protei 48.9 1E+02 0.0022 35.1 9.5 16 491-506 340-355 (407)
108 KOG1676 K-homology type RNA bi 47.4 1.9E+02 0.0041 35.8 12.1 8 4-11 390-397 (600)
109 KOG3794 CBF1-interacting corep 47.3 58 0.0013 38.0 7.5 13 838-850 215-227 (453)
110 KOG2932 E3 ubiquitin ligase in 47.2 2.5E+02 0.0055 32.1 12.1 6 38-43 282-287 (389)
111 KOG4217 Nuclear receptors of t 47.1 2.2E+02 0.0048 34.2 12.2 11 447-457 408-418 (605)
112 KOG0151 Predicted splicing reg 46.7 39 0.00085 42.1 6.4 55 471-525 387-442 (877)
113 KOG3771 Amphiphysin [Intracell 46.6 2.9E+02 0.0062 33.3 13.2 50 679-728 2-51 (460)
114 KOG0566 Inositol-1,4,5-triphos 46.0 1.4E+02 0.003 38.8 11.0 16 73-88 969-984 (1080)
115 KOG1016 Predicted DNA helicase 45.2 75 0.0016 40.3 8.4 8 117-124 1337-1344(1387)
116 KOG3895 Synaptic vesicle prote 44.5 1.2E+02 0.0025 35.3 9.2 8 121-128 472-479 (488)
117 KOG4043 Uncharacterized conser 44.2 6.5 0.00014 40.2 -0.4 28 894-921 164-191 (214)
118 KOG1960 Predicted RNA-binding 42.9 2.5E+02 0.0054 33.2 11.5 14 20-33 341-354 (531)
119 KOG0905 Phosphoinositide 3-kin 42.6 1.8E+02 0.004 38.7 11.4 19 701-719 918-936 (1639)
120 KOG1450 Predicted Rho GTPase-a 42.2 28 0.0006 43.3 4.3 74 196-269 269-358 (650)
121 KOG2932 E3 ubiquitin ligase in 41.9 6E+02 0.013 29.3 14.8 7 195-201 368-374 (389)
122 KOG1920 IkappaB kinase complex 41.2 1.1E+03 0.023 32.0 24.9 76 496-572 873-953 (1265)
123 PF12238 MSA-2c: Merozoite sur 40.7 84 0.0018 33.9 7.1 7 114-120 194-200 (205)
124 KOG4334 Uncharacterized conser 40.0 24 0.00052 42.0 3.2 34 236-269 154-187 (650)
125 KOG3248 Transcription factor T 39.7 3.2E+02 0.007 31.6 11.6 12 167-178 158-169 (421)
126 KOG4274 Positive cofactor 2 (P 39.3 1.2E+02 0.0025 37.2 8.6 7 27-33 197-203 (742)
127 KOG4302 Microtubule-associated 39.3 9.2E+02 0.02 30.7 20.8 108 701-819 97-214 (660)
128 KOG0905 Phosphoinositide 3-kin 37.7 2.3E+02 0.005 37.9 11.2 10 463-472 868-877 (1639)
129 KOG1049 Polyadenylation factor 37.6 8.2E+02 0.018 30.2 15.2 45 516-562 492-536 (538)
130 KOG4286 Dystrophin-like protei 37.3 14 0.00029 46.1 0.7 30 197-226 351-380 (966)
131 KOG2138 Predicted RNA binding 35.3 13 0.00028 45.9 0.1 13 556-568 463-475 (883)
132 KOG1103 Predicted coiled-coil 34.4 2.4E+02 0.0053 32.5 9.7 18 2-20 336-353 (561)
133 KOG0162 Myosin class I heavy c 34.4 3.3E+02 0.0072 34.6 11.4 8 197-204 1083-1090(1106)
134 PTZ00436 60S ribosomal protein 33.9 7.8E+02 0.017 28.3 13.7 44 792-844 100-146 (357)
135 KOG3661 Uncharacterized conser 33.8 66 0.0014 39.9 5.5 20 446-465 496-515 (1019)
136 KOG4217 Nuclear receptors of t 33.5 3.3E+02 0.0072 32.9 10.9 12 20-31 124-135 (605)
137 TIGR03300 assembly_YfgL outer 33.4 42 0.00092 38.5 3.9 62 205-266 286-347 (377)
138 PHA03377 EBNA-3C; Provisional 32.4 3.9E+02 0.0084 33.9 11.5 134 8-144 814-952 (1000)
139 KOG0940 Ubiquitin protein liga 32.1 36 0.00078 39.7 3.0 32 197-228 115-146 (358)
140 KOG4167 Predicted DNA-binding 32.1 1.3E+02 0.0027 38.1 7.5 11 598-608 658-668 (907)
141 KOG2045 5'-3' exonuclease XRN1 32.0 3.8E+02 0.0082 35.1 11.5 7 169-175 1457-1463(1493)
142 KOG2223 Uncharacterized conser 31.8 1.8E+02 0.0039 34.8 8.3 75 766-842 235-332 (586)
143 KOG0148 Apoptosis-promoting RN 31.7 49 0.0011 37.0 3.7 6 38-43 277-282 (321)
144 PF07946 DUF1682: Protein of u 31.7 1.2E+02 0.0025 34.9 7.0 14 831-844 263-276 (321)
145 KOG4442 Clathrin coat binding 30.8 3 6.6E-05 51.2 -6.0 57 194-270 651-707 (729)
146 KOG4286 Dystrophin-like protei 30.8 26 0.00057 43.8 1.6 37 237-273 350-386 (966)
147 KOG4594 Sequence-specific sing 30.3 6.5E+02 0.014 28.6 11.9 9 102-110 206-214 (354)
148 KOG3771 Amphiphysin [Intracell 28.9 5.2E+02 0.011 31.3 11.6 48 602-649 2-53 (460)
149 PRK10263 DNA translocase FtsK; 28.5 2.4E+02 0.0052 38.4 9.7 9 766-774 1292-1300(1355)
150 KOG1892 Actin filament-binding 28.4 4.6E+02 0.01 34.5 11.5 12 201-212 1262-1273(1629)
151 smart00564 PQQ beta-propeller 28.4 53 0.0012 23.8 2.4 22 245-266 12-33 (33)
152 PF11172 DUF2959: Protein of u 28.3 7.9E+02 0.017 26.6 12.5 57 701-777 18-74 (201)
153 KOG0162 Myosin class I heavy c 28.1 4.2E+02 0.0091 33.8 10.8 10 103-112 1015-1024(1106)
154 KOG2357 Uncharacterized conser 27.7 1.6E+02 0.0035 34.8 7.1 38 829-866 369-406 (440)
155 KOG4334 Uncharacterized conser 27.6 46 0.00099 39.8 2.8 41 192-232 151-191 (650)
156 PF06705 SF-assemblin: SF-asse 27.6 8.5E+02 0.018 26.7 16.3 22 619-640 30-51 (247)
157 KOG1144 Translation initiation 27.4 1.4E+02 0.0031 37.9 7.0 7 963-969 449-455 (1064)
158 PRK11138 outer membrane biogen 27.4 68 0.0015 37.3 4.3 61 205-265 301-361 (394)
159 KOG4848 Extracellular matrix-a 27.1 3.8E+02 0.0082 28.7 9.0 13 700-712 83-95 (225)
160 KOG3910 Helix loop helix trans 27.1 1.2E+03 0.027 28.5 15.0 13 216-228 321-333 (632)
161 PF13360 PQQ_2: PQQ-like domai 25.5 43 0.00094 35.2 2.1 60 205-265 43-102 (238)
162 PRK11138 outer membrane biogen 25.5 88 0.0019 36.4 4.8 67 200-267 122-188 (394)
163 KOG4590 Signal transduction pr 25.4 4.9E+02 0.011 31.2 10.6 127 3-131 104-244 (409)
164 KOG2888 Putative RNA binding p 25.2 46 0.00099 38.0 2.2 14 621-634 171-184 (453)
165 KOG0163 Myosin class VI heavy 25.1 4.2E+02 0.0091 33.9 10.2 23 448-470 425-449 (1259)
166 PF13360 PQQ_2: PQQ-like domai 24.9 80 0.0017 33.2 3.9 62 201-264 175-237 (238)
167 cd08816 CARD_RIG-I_1 Caspase a 24.5 2.3E+02 0.0049 26.6 6.0 15 580-594 4-18 (89)
168 KOG2546 Abl interactor ABI-1, 24.2 96 0.0021 36.7 4.5 6 118-123 409-414 (483)
169 TIGR03300 assembly_YfgL outer 24.0 83 0.0018 36.1 4.2 66 200-266 107-172 (377)
170 KOG4822 Predicted nuclear memb 23.8 2.9E+02 0.0062 36.8 8.7 8 205-212 1860-1867(1906)
171 smart00818 Amelogenin Amelogen 22.8 7.5E+02 0.016 25.9 10.0 6 141-146 141-146 (165)
172 KOG2223 Uncharacterized conser 22.6 3E+02 0.0065 33.0 8.0 42 478-519 220-264 (586)
173 cd00216 PQQ_DH Dehydrogenases 22.4 86 0.0019 37.9 4.0 61 206-266 364-433 (488)
174 KOG3583 Uncharacterized conser 22.3 73 0.0016 34.4 2.9 59 4-65 197-274 (279)
175 cd09235 V_Alix Middle V-domain 21.9 1.3E+03 0.027 26.7 24.9 210 623-841 87-323 (339)
176 KOG1925 Rac1 GTPase effector F 21.5 1.2E+02 0.0025 36.6 4.6 18 3-21 187-204 (817)
177 KOG3753 Circadian clock protei 21.5 1.2E+03 0.026 30.6 13.2 11 474-484 1029-1039(1114)
178 KOG1960 Predicted RNA-binding 20.8 1.5E+03 0.032 27.1 13.9 9 88-96 373-381 (531)
179 KOG2588 Predicted DNA-binding 20.7 1.3E+03 0.029 30.4 13.7 17 445-461 509-525 (953)
180 PF06484 Ten_N: Teneurin Intra 20.7 9.2E+02 0.02 28.1 11.1 8 97-104 209-216 (370)
181 KOG3600 Thyroid hormone recept 20.6 2.8E+02 0.0061 37.2 7.8 40 699-738 1931-1971(2238)
182 COG3857 AddB ATP-dependent nuc 20.5 2.2E+03 0.047 29.0 16.7 100 461-595 379-480 (1108)
183 PRK14086 dnaA chromosomal repl 20.3 1.8E+03 0.039 28.0 17.4 7 745-751 527-533 (617)
184 KOG3648 Golgi apparatus protei 20.3 18 0.00039 44.2 -2.3 33 8-40 28-61 (1179)
185 KOG1925 Rac1 GTPase effector F 20.0 2.3E+02 0.0049 34.4 6.4 7 661-667 548-554 (817)
No 1
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=4.5e-71 Score=602.03 Aligned_cols=526 Identities=25% Similarity=0.425 Sum_probs=423.9
Q ss_pred CCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHHHH
Q 001916 196 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQ 275 (996)
Q Consensus 196 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~e~ 275 (996)
+.+.|.+.+++|||+||||..|+.|+|+||.+++...|..+...+|+++.|.||++||||..|+||+|.+|.+.+....-
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe~~ 92 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVEPI 92 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccCcH
Confidence 46789999999999999999999999999999998888888889999999999999999999999999999997642110
Q ss_pred HHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhhccCCCccccccccccCCccccCCCCCCCcccccccc
Q 001916 276 AEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVA 355 (996)
Q Consensus 276 a~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 355 (996)
++ +. . +.+|- .+.++. ..+..
T Consensus 93 ~e----QK------~---~~~S~------------------i~~ngn-------------~~ait--------------- 113 (590)
T COG5104 93 AE----QK------H---DERSM------------------IGGNGN-------------DMAIT--------------- 113 (590)
T ss_pred Hh----hh------h---HHHHH------------------hccCCC-------------ccccc---------------
Confidence 10 00 0 00000 000000 00000
Q ss_pred ccCCCCCcccccCccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhhcccccccchhHHhhh
Q 001916 356 NADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTV 435 (996)
Q Consensus 356 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ee~kk~~~~~~k~~~~~E~k~~ 435 (996)
++.. ..| +- ..+.....|++.+ . +
T Consensus 114 --~~e~-----~eP--------~~--~~~~~~sQy~~~s------------------------------t-------~-- 137 (590)
T COG5104 114 --DHET-----SEP--------KY--LLGRLMSQYGITS------------------------------T-------K-- 137 (590)
T ss_pred --cccc-----ccc--------hh--HHHHHHHhhcchh------------------------------H-------H--
Confidence 0000 000 00 0011111111110 0 0
Q ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 436 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKLKK 514 (996)
Q Consensus 436 ~~e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t-~~ERKqlFeeYl~~r~keEkeekr~k~kk 514 (996)
..+...|+|+|+.+|..||++++|+|+|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+.++++...++.+
T Consensus 138 --~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k 214 (590)
T COG5104 138 --DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRK 214 (590)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Confidence 1122358999999999999999999999999999998 8999998875 67999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001916 515 ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESC 594 (996)
Q Consensus 515 are~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~ 594 (996)
.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+++++|++|++.|-.-+++-.+..+..++.+|..+|.++
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 99999999999989999999999999999999999999999999999999999999999988888999999999999998
Q ss_pred ccccCCCcHHHHHHHhhhhhhhhc------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001916 595 DFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEAD 668 (996)
Q Consensus 595 ~~It~~TtW~ev~~~L~~D~Ry~~------L~~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~ 668 (996)
+ -...++|.-.+-.|..++||.. |+..|.|--|.+|++.|+++.--.....+.+..+.+|++||+|+.||.++
T Consensus 295 ~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 G-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred C-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 7 4577899977777888888853 56678888999999999998876666666677899999999999999999
Q ss_pred HhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHH
Q 001916 669 VALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFK 748 (996)
Q Consensus 669 ~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~ 748 (996)
.-.|+|+..++|+++||+|+|||||++|+ |++||+|||||+|+|-+|+..|...|+.+.+++..++|.++.+...+++.
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vdei~ 452 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDEIF 452 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHHHH
Confidence 99999999999999999999999999997 89999999999999999999999999999999988999888877777776
Q ss_pred HHHh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-Hhhhc--C-CCCCCCCHHHHHHH
Q 001916 749 ASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE---FFD-LLCSV--K-EISATSTWENCRQL 816 (996)
Q Consensus 749 ~~l~-----ed~r~~~l~~~nlk~iFe~li~r~kEKeeke~rk~rR~~~~---F~~-lLk~~--k-~I~~~stWee~k~~ 816 (996)
+.+. .+..+..|+.+++.+|.+.+|.+.-|+-.......+|+.+. ++. ||..+ + .-...++|+-+-..
T Consensus 453 ~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~~~k~ 532 (590)
T COG5104 453 EAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKE 532 (590)
T ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHHHHHH
Confidence 6654 44557888999999999999876655543333444555443 333 44432 2 44678999999999
Q ss_pred hcCcccccccCCh-hHHHHHHHHHHH
Q 001916 817 LEGSQEFSSIGDE-SICRGVFDEFVT 841 (996)
Q Consensus 817 i~~~~ey~~L~~e-~~r~~~F~efi~ 841 (996)
|....||++|++| ..|+.+|++|--
T Consensus 533 L~Es~E~k~~~DE~N~~Rq~fED~k~ 558 (590)
T COG5104 533 LGESLEYKALGDEDNIRRQIFEDFKP 558 (590)
T ss_pred HhHhHHHHHhcchhHHHHHhhhcCCc
Confidence 9999999999987 567899999864
No 2
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=1.8e-53 Score=473.08 Aligned_cols=344 Identities=29% Similarity=0.533 Sum_probs=282.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001916 443 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKM 522 (996)
Q Consensus 443 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~l 522 (996)
-..||+...|++||+++||+++++|++.+.+|++||||.+|.. .+|+++|+.||+.+.+.++.+++.+.+.|+++|.+|
T Consensus 239 vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s-~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kL 317 (617)
T KOG0155|consen 239 VPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNS-GERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKL 317 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999975 599999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc
Q 001916 523 LEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQ 602 (996)
Q Consensus 523 Lee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~~~It~~Tt 602 (996)
|.++ .++..+.|+.|..+|.+|+||++|...+||+.+|++||..|+++++++.+..+++...+|..||.+.. |+..+.
T Consensus 318 L~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ 395 (617)
T KOG0155|consen 318 LAEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSK 395 (617)
T ss_pred HHhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhh
Confidence 9998 58899999999999999999999998899999999999999999999999999999999999999887 889999
Q ss_pred HHHHHHHhhhhhhhhcCCc-ccHHHHHHHHHHHHHHHH------HHHHHH-------HHHH-------HH----HHHH--
Q 001916 603 WRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKEE------EEQRKI-------QKEE-------LS----KTER-- 655 (996)
Q Consensus 603 W~ev~~~L~~D~Ry~~L~~-~DrLelFed~I~~Lekee------eE~k~~-------~k~~-------~r----R~eR-- 655 (996)
|.++++.|.+++||.+|+. ++|..+|.+||..|..+. +.++++ +++. .+ ..+.
T Consensus 396 ws~tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k 475 (617)
T KOG0155|consen 396 WSKTKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQK 475 (617)
T ss_pred hhHHHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 799999999999886321 111111 1100 00 0011
Q ss_pred --HhHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 001916 656 --KNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKL 733 (996)
Q Consensus 656 --K~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~ 733 (996)
.+-+.|++||-+++++. ..+|.+..++|..|++|.+ |.-+......-||.|||..|.++-+++...|.|- .
T Consensus 476 ~~e~~~~y~all~d~irs~----e~sw~e~rrilrkd~r~as-~~~le~~~keklf~dhiksl~~k~re~f~qllde--~ 548 (617)
T KOG0155|consen 476 RGEAEDTYRALLIDLIRST----ENSWHEARRILRKDERYAS-CDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDE--H 548 (617)
T ss_pred HHHHHHHHHHHHHHHHhCc----ccchHHhHHHhhccccccc-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 13378999999998754 4689999999999999865 4455667778999999999988877776655542 2
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 001916 734 RKITLSSTWTFEDFKASVLEDATSPPISDVNL--KLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATS 808 (996)
Q Consensus 734 ~~i~v~stwt~eef~~~l~ed~r~~~l~~~nl--k~iFe~li~r~kEKeeke~rk~rR~~~~F~~lLk~~k~I~~~s 808 (996)
..|+.++.|+ +.+.+|.++..|..|....+ +.-|.++ +.++...+.+.|+.||++++.|++.+
T Consensus 549 ~~it~~~~w~--e~kkii~e~~t~~k~~ss~rk~~r~f~d~----------~~~~~~~~~d~fr~~l~etk~it~~s 613 (617)
T KOG0155|consen 549 EKITPMMRWR--EAKKIIQEEETFVKIASSERKVERDFRDW----------QERRHDHLTDEFREMLSETKIITHKS 613 (617)
T ss_pred hhcchHHHHH--HhhHHHhhhHHHHHHHhhhhhhhccHHHH----------HHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 4677778884 88888887776654433221 1112222 33555678899999999988887654
No 3
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=100.00 E-value=3.8e-53 Score=486.83 Aligned_cols=414 Identities=39% Similarity=0.629 Sum_probs=388.1
Q ss_pred hhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001916 440 FAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 519 (996)
Q Consensus 440 ~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F 519 (996)
+.|++|++|+.+|+.||++++|++.|+|+++++.|++||||+++.++.+++|+|+.|..++.+.+.++.....++++++|
T Consensus 20 ~~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~ 99 (463)
T KOG0152|consen 20 VRFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDF 99 (463)
T ss_pred HHhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 001916 520 KKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 599 (996)
Q Consensus 520 ~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~~~It~ 599 (996)
..||.++..+.+++.|.++..+|..+|+|.++... +++.+|++||..|.+++++++...+++++..|..+|..+..+..
T Consensus 100 ~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~ 178 (463)
T KOG0152|consen 100 LQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGL 178 (463)
T ss_pred HHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccc
Confidence 99999999999999999999999999999998765 99999999999999999998888888999999999998777899
Q ss_pred CCcHHHHHHHhhhhhhhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCC
Q 001916 600 NTQWRKVQDRLEADERCSR-LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 678 (996)
Q Consensus 600 ~TtW~ev~~~L~~D~Ry~~-L~~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~Ita~T 678 (996)
.++|.+++..+..|++|.. |+..|+|..|++||..+++++.+..+ .+.+.+|++|++||+|+.||+++.+.|+|+++|
T Consensus 179 ~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~-~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T 257 (463)
T KOG0152|consen 179 DRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQ-ERKRNKRQERKNRDAFRSLLQELPATGKITSTT 257 (463)
T ss_pred cchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcc-hhhhhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 9999999999999999998 99999999999999999998876633 336788999999999999999999999999999
Q ss_pred ChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCCC
Q 001916 679 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSP 758 (996)
Q Consensus 679 ~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~~~l~ed~r~~ 758 (996)
.|.++++.|+++++|..++ |++||+|+|||+|+|+.|...+.+.+.+|+++++..+|.+...+++.+|..+|..+..+.
T Consensus 258 ~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
T KOG0152|consen 258 GWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLEPRYYEYPPLIKDCLKERQIELSAQTSLQEFNSVLSKDKENE 336 (463)
T ss_pred CCccccchhcCCcchHhhc-CCCCCChhhcccccccccccccccchHHHHHHHHhhcccccchhhHHHhhhhhhhhhccc
Confidence 9999999999999998775 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHhcCcccccccCChhHHHH
Q 001916 759 PISDVNLKLIFDDLLIKVKEKEEKEA----KKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRG 834 (996)
Q Consensus 759 ~l~~~nlk~iFe~li~r~kEKeeke~----rk~rR~~~~F~~lLk~~k~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~ 834 (996)
.++..+++++|+.|+.+++++++++. ++.++...+|..+|+.+..|.+.++|+.+++++.+.++|.+|+++..++.
T Consensus 337 ~~~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~ 416 (463)
T KOG0152|consen 337 KVDAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTWDSAKPLVEDSEEFSALGSEESRVP 416 (463)
T ss_pred cccHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCchhhccccccChhhhhcCCccccce
Confidence 99999999999999999987765543 46788899999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001916 835 VFDEFVTQLKEQAKDYERKRKE 856 (996)
Q Consensus 835 ~F~efi~~Lkek~~e~er~r~~ 856 (996)
+|.+||..+......-++.+..
T Consensus 417 ~~~~~~t~~~~~~~~~~~~~~~ 438 (463)
T KOG0152|consen 417 GFPDYVTPLVSTQPGSESKRVK 438 (463)
T ss_pred eccccccchhhccccccccccc
Confidence 9999999999877766665543
No 4
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=3.1e-36 Score=335.97 Aligned_cols=292 Identities=26% Similarity=0.413 Sum_probs=241.4
Q ss_pred ccccCCCCCCCCCchhhh--hhhhcccccc-cchhHHhhhhhhhhhccC----------HHHHHHHHHHHHHhCCCCCCC
Q 001916 399 SDLVGASDKVPPPVTEET--RKDAVRGEKV-SDALEEKTVEQEHFAYAN----------KLEAKNAFKALLESANVGSDW 465 (996)
Q Consensus 399 ~~~~~~~~~~s~~~~ee~--kk~~~~~~k~-~~~~E~k~~~~e~~~~~t----------keEAk~aFk~ML~e~~V~s~~ 465 (996)
|..|+.+.|++++.+||. .+.+..+.+. +...+++++|++++.-.- ..+|++.|.+||.++.++..+
T Consensus 248 FkEMLkERgVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~~~n~rs 327 (617)
T KOG0155|consen 248 FKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEAELNGRS 327 (617)
T ss_pred HHHHHHhcCCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 456788999999999954 5666666665 666799999999875211 237999999999999999999
Q ss_pred cHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccc
Q 001916 466 TWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFEND 545 (996)
Q Consensus 466 tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~D 545 (996)
+|..+.+++.+|+||.+|....+|..+||+|+..+.+.++++++.+..+++.+|..||.+.. |+..+.|++++..+.++
T Consensus 328 ~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~~-l~~~S~ws~tk~~le~e 406 (617)
T KOG0155|consen 328 SYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQE-LTRKSKWSKTKDTLEDE 406 (617)
T ss_pred chHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhhhhhHHHHHhccc
Confidence 99999999999999999998899999999999999999999999999999999999999984 99999999999999999
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHH--------------------H---------------HHHHHHHHHHHHHHHHHH
Q 001916 546 ERFKALERERDRKDMFDDHLDELKQK--------------------E---------------RAKAQEERKRNIIEYRKF 590 (996)
Q Consensus 546 pRfkAv~~e~ERe~lFeeYi~~Lkkk--------------------E---------------ke~~r~~rkra~~ef~~l 590 (996)
|||.+|.+...|+.+|.+||..|... + ++..+.++..+.+.|++|
T Consensus 407 ery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~al 486 (617)
T KOG0155|consen 407 ERYIALDSSSTRESLFREYIANLGDETASDIEQEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRAL 486 (617)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998789999999999988532 0 111122234467789999
Q ss_pred HhhcccccCCCcHHHHHHHhhhhhhhhcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001916 591 LESCDFIKANTQWRKVQDRLEADERCSRLD---KMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEA 667 (996)
Q Consensus 591 L~~~~~It~~TtW~ev~~~L~~D~Ry~~L~---~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e 667 (996)
|-.+. -.....|.+...+|..|+||.+.+ +.+...||.|||+.|++ |.|++|+.||++
T Consensus 487 l~d~i-rs~e~sw~e~rrilrkd~r~as~~~le~~~keklf~dhiksl~~------------------k~re~f~qllde 547 (617)
T KOG0155|consen 487 LIDLI-RSTENSWHEARRILRKDERYASCDMLEKTRKEKLFDDHIKSLER------------------KRREAFFQLLDE 547 (617)
T ss_pred HHHHH-hCcccchHHhHHHhhcccccccCcccchHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHh
Confidence 97652 246679999999999999998755 44677899999987755 568999999999
Q ss_pred HHhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHH
Q 001916 668 DVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEE 715 (996)
Q Consensus 668 ~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~Vee 715 (996)
+ ..|++++.|.|...+|..+++|+.+++ +.---.--|.|+++.
T Consensus 548 ~---~~it~~~~w~e~kkii~e~~t~~k~~s--s~rk~~r~f~d~~~~ 590 (617)
T KOG0155|consen 548 H---EKITPMMRWREAKKIIQEEETFVKIAS--SERKVERDFRDWQER 590 (617)
T ss_pred h---hhcchHHHHHHhhHHHhhhHHHHHHHh--hhhhhhccHHHHHHH
Confidence 7 479999999999999999999998863 222223345555553
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.90 E-value=4.9e-22 Score=218.80 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=161.4
Q ss_pred HHHHHHHHHHh-CCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001916 448 AKNAFKALLES-ANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEES 526 (996)
Q Consensus 448 Ak~aFk~ML~e-~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~ 526 (996)
-+.+|.+||.. -.|.+++.|-.+-+.|...|-|.++-+..+++|+|.+|+..+...|+.-++.....|-..|..+|...
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 46899999996 47999999999999999999999999999999999999999999999998888899999999999976
Q ss_pred hcCCCCCCHHHHHHHhccchhhhccCC-----hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q 001916 527 VELTSSTRWSKAVTMFENDERFKALER-----ERDRKDMFDDHLDELKQKE-------RAKAQEERKRNIIEYRKFLESC 594 (996)
Q Consensus 527 ~~I~~~TrW~~a~~~f~~DpRfkAv~~-----e~ERe~lFeeYi~~LkkkE-------ke~~r~~rkra~~ef~~lL~~~ 594 (996)
...++++|.-+.-.|..++||.+... -.+.+-.|.+|+..|++.- +.+..+..+.++++|+.||+..
T Consensus 295 -~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 -GSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred -CcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 36678999988889999999985432 2344455666666666542 1122223456899999999864
Q ss_pred ---ccccCCCcHHHHHHHhhhhhhhhcCC---cccHHHHHHHHHHHHHHHHHHHHH
Q 001916 595 ---DFIKANTQWRKVQDRLEADERCSRLD---KMDRLEIFQEYLNDLEKEEEEQRK 644 (996)
Q Consensus 595 ---~~It~~TtW~ev~~~L~~D~Ry~~L~---~~DrLelFed~I~~LekeeeE~k~ 644 (996)
+.|+..+.|.+++..|.+||||.+|. ++.+|+||.|+|-+|+.-+-+.++
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~ivDlenmy~~~r~ 429 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIVDLENMYGFARR 429 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHHhHHHHHHHHHH
Confidence 46888899999999999999999886 478999999999999987765543
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=185.62 Aligned_cols=352 Identities=19% Similarity=0.293 Sum_probs=263.3
Q ss_pred cCCCCCCCCCchhhhhhhhcccccc----cchhHHhhhhhhhhhcc----------CHHHHHHHHHHHHHhC-CCCCCCc
Q 001916 402 VGASDKVPPPVTEETRKDAVRGEKV----SDALEEKTVEQEHFAYA----------NKLEAKNAFKALLESA-NVGSDWT 466 (996)
Q Consensus 402 ~~~~~~~s~~~~ee~kk~~~~~~k~----~~~~E~k~~~~e~~~~~----------tkeEAk~aFk~ML~e~-~V~s~~t 466 (996)
++-+.++...++|+.-.......+- ..+.+.+++++.+.... ....++..|..||.++ .+.+...
T Consensus 35 ~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~~~l~e~~~~~~~~~ 114 (463)
T KOG0152|consen 35 LLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFLQMLQEESKYKSSTE 114 (463)
T ss_pred HHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHhHhhccccccccc
Confidence 4445567777787654444443332 66778888888876541 1236889999999875 6899999
Q ss_pred HHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccch
Q 001916 467 WDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDE 546 (996)
Q Consensus 467 Weka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dp 546 (996)
|.++...|..||+|.++... +++.+|..|+..+.+.+++++...+++...+|..+|..+..+...++|..+..++..|+
T Consensus 115 ~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 193 (463)
T KOG0152|consen 115 WKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLDRDWRRAQGRLTEDS 193 (463)
T ss_pred ccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhccccccccchHHHHhhhhhccc
Confidence 99999999999999998765 89999999999999999999888888999999999998888999999999999999999
Q ss_pred hhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhcc---cccCCCcHHHHHHHhhhhhhh
Q 001916 547 RFKA-LERERDRKDMFDDHLDELKQKERAKAQE------ERKRNIIEYRKFLESCD---FIKANTQWRKVQDRLEADERC 616 (996)
Q Consensus 547 RfkA-v~~e~ERe~lFeeYi~~LkkkEke~~r~------~rkra~~ef~~lL~~~~---~It~~TtW~ev~~~L~~D~Ry 616 (996)
+|.. +.++ ++...|++||..+.+++.+..+. ..+++++.|+.||.+.. .|++.|.|.+++..+..|++|
T Consensus 194 ~~~~~ldke-d~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~~~~ki~s~T~w~~~~~~i~~~~r~ 272 (463)
T KOG0152|consen 194 GFSEDLDKE-DALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELPATGKITSTTGWEDLFPSIKDDPRS 272 (463)
T ss_pred ccccccchH-HhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhccccccccccCCccccchhcCCcch
Confidence 9998 7665 99999999999998775533222 23567888999999864 799999999999999999999
Q ss_pred hcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhh
Q 001916 617 SRLD---KMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPY 693 (996)
Q Consensus 617 ~~L~---~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf 693 (996)
..+. ++.++++|++++..|+....+...+.++ .++.+. -.+.+.+...+|...|..+..|
T Consensus 273 ~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~i~~-----------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 335 (463)
T KOG0152|consen 273 ANALNQSGSTPLDLFEDPVEPLEPRYYEYPPLIKD-----------CLKERQ------IELSAQTSLQEFNSVLSKDKEN 335 (463)
T ss_pred HhhcCCCCCChhhcccccccccccccccchHHHHH-----------HHHhhc------ccccchhhHHHhhhhhhhhhcc
Confidence 8764 5679999999999998765554433322 222211 2344556666677777777665
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHhc-ccccccCCCHHHHHHHHhhcCCCCCCC
Q 001916 694 MAVASNTSGSTPKDLFEDVVEELQKQFQEDKT-----------RIKDAVKLR-KITLSSTWTFEDFKASVLEDATSPPIS 761 (996)
Q Consensus 694 ~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~-----------~ikd~lk~~-~i~v~stwt~eef~~~l~ed~r~~~l~ 761 (996)
..+ +......+|..+++.......+.++ .+..+|+.. ++.+.++| +...+++.....|.+|.
T Consensus 336 ~~~----~~~~~k~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~~~~~~~~~~~--~~a~p~~~~s~~~~~~~ 409 (463)
T KOG0152|consen 336 EKV----DAASMKLVFQSLIEKAKSKIPERKRIENRRLRRHANNFRNLLKSLNGIPKSSTW--DSAKPLVEDSEEFSALG 409 (463)
T ss_pred ccc----cHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCc--hhhccccccChhhhhcC
Confidence 443 3334455666666655433222222 234455554 47777777 78999999999998884
Q ss_pred h-hhHHHHHHHHHHHHHH
Q 001916 762 D-VNLKLIFDDLLIKVKE 778 (996)
Q Consensus 762 ~-~nlk~iFe~li~r~kE 778 (996)
. .++..+|..++..+..
T Consensus 410 ~e~~~~~~~~~~~t~~~~ 427 (463)
T KOG0152|consen 410 SEESRVPGFPDYVTPLVS 427 (463)
T ss_pred Cccccceeccccccchhh
Confidence 4 6778889988887755
No 7
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.13 E-value=7.2e-11 Score=97.50 Aligned_cols=50 Identities=32% Similarity=0.616 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCcccccc-CChHHHHHHHHHH
Q 001916 447 EAKNAFKALLESANVGSDWTWDQALRAIINDRRYGAL-RTLGERKTAFNEY 496 (996)
Q Consensus 447 EAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al-~t~~ERKqlFeeY 496 (996)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999 8889999999998
No 8
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.00 E-value=4.3e-10 Score=94.17 Aligned_cols=52 Identities=42% Similarity=0.615 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCC-CCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001916 447 EAKNAFKALLESANVG-SDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLG 498 (996)
Q Consensus 447 EAk~aFk~ML~e~~V~-s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~ 498 (996)
+|+++|+.||.+.++. +.++|+.+.+.|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 5789999999999876 999999999999999999999999999999999996
No 9
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.90 E-value=2.9e-09 Score=87.99 Aligned_cols=50 Identities=30% Similarity=0.688 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhcc-CChHHHHHHHHHH
Q 001916 514 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKAL-ERERDRKDMFDDH 564 (996)
Q Consensus 514 kare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv-~~e~ERe~lFeeY 564 (996)
+|+++|++||.++. |+++|+|.++..+|.+||||.+| .+..+|++||++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 57899999999986 99999999999999999999999 7889999999998
No 10
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.86 E-value=4.1e-09 Score=88.26 Aligned_cols=53 Identities=38% Similarity=0.756 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHH
Q 001916 514 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 566 (996)
Q Consensus 514 kare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~ 566 (996)
+++++|..||.++..++++++|.++..+|.+||||.+|.+..+|++||++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 58899999999998888999999999999999999999999999999999996
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.51 E-value=8.8e-08 Score=71.28 Aligned_cols=30 Identities=47% Similarity=1.080 Sum_probs=27.4
Q ss_pred CCCCcEEEECCC-CCeEEEeCCCCeeeccCC
Q 001916 237 ASTDWKEFTSPD-GRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 237 ~~~~W~e~~~~~-Gr~YyyN~~T~es~We~P 266 (996)
++.+|.++.|.+ |++||||..||+|+|+.|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 467899999875 999999999999999998
No 12
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.46 E-value=8.3e-08 Score=71.42 Aligned_cols=29 Identities=41% Similarity=0.976 Sum_probs=26.9
Q ss_pred CCCcEEEEcCC-CCceeeccCccccccCCC
Q 001916 197 QTDWKEHTSAD-GRRYYFNKRTRVSTWDKP 225 (996)
Q Consensus 197 ~~~W~e~~~~~-Gr~YYyN~~T~~s~WekP 225 (996)
+.+|+++.|++ |++||||..|++|+|+.|
T Consensus 2 P~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 2 PPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp STTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 45799999987 999999999999999998
No 13
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.31 E-value=6.7e-07 Score=66.69 Aligned_cols=31 Identities=45% Similarity=1.017 Sum_probs=29.0
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 237 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 237 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
++.+|.++.|.+|++||||+.|++|+|+.|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 3689999999999999999999999999995
No 14
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.30 E-value=5.8e-07 Score=67.05 Aligned_cols=30 Identities=40% Similarity=1.004 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+|+++.|.+|++||||+.|++|+|++|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 578999999999999999999999999995
No 15
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.28 E-value=6.6e-07 Score=66.04 Aligned_cols=30 Identities=37% Similarity=0.921 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+|+.+.|.+|++||||..|++|+|++|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 368999999999999999999999999995
No 16
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.16 E-value=2.2e-06 Score=63.26 Aligned_cols=30 Identities=47% Similarity=0.988 Sum_probs=28.1
Q ss_pred CCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 238 STDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 238 ~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
+.+|....|.+|++||||..|++|+|+.|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 468999999999999999999999999995
No 17
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=98.04 E-value=5.3e-06 Score=86.53 Aligned_cols=71 Identities=27% Similarity=0.671 Sum_probs=63.9
Q ss_pred CCCCCCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 192 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
+..|.+.+|..-.+-.||.||.++.|..|.|.+|- |+..++.||+.+++..--+||||..+|.++.+.|..
T Consensus 90 edlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPl------erEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 90 EDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPL------EREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred ccCCCCCCcceeeEecCceeEeecCCCcccccChh------hhccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 55678899999999999999999999999999995 445788999999999888999999999999998865
No 18
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.97 E-value=0.0003 Score=86.03 Aligned_cols=230 Identities=18% Similarity=0.346 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCCh---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 001916 448 AKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTL---GERKTAFNEYLGQKKKQDAEERRL-KLKKARDDYKKML 523 (996)
Q Consensus 448 Ak~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~---~ERKqlFeeYl~~r~keEkeekr~-k~kkare~F~~lL 523 (996)
|+..|-.||... |.--+.|-++..+|-..|.|.-.-++ .--+.+|+.||.+++.+....++. -.-..-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678898888643 33334499999999999999854332 344569999999988777665543 3455668888888
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhc--c-------------C------------ChHHHHHHHHHHHHHHHHHHHHHH
Q 001916 524 EESVELTSSTRWSKAVTMFENDERFKA--L-------------E------------RERDRKDMFDDHLDELKQKERAKA 576 (996)
Q Consensus 524 ee~~~I~~~TrW~~a~~~f~~DpRfkA--v-------------~------------~e~ERe~lFeeYi~~LkkkEke~~ 576 (996)
-...+|. .-|.+++++.+..|.|.- | . ..-+-..+|+.|+..|...
T Consensus 133 ~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~----- 205 (1100)
T KOG4271|consen 133 PNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNE----- 205 (1100)
T ss_pred ccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhh-----
Confidence 7654443 456688877766665541 1 0 0123467788877777543
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCcHHHHHHHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 577 QEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERK 656 (996)
Q Consensus 577 r~~rkra~~ef~~lL~~~~~It~~TtW~ev~~~L~~D~Ry~~L~~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK 656 (996)
+.+-..+++|...|++..+|+..--|.++...|+++.-|+.+....--++|..|...|-. |
T Consensus 206 -r~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i~e------------------k 266 (1100)
T KOG4271|consen 206 -RKRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQIIE------------------K 266 (1100)
T ss_pred -hhhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHHHH------------------H
Confidence 123346688999999999999999999999999999999999888777777666544322 5
Q ss_pred hHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHH
Q 001916 657 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKT 725 (996)
Q Consensus 657 ~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~ 725 (996)
++..|.++|.+ |..++..+..+ +.+-+.+.+.-.|+.++- .+|...+.
T Consensus 267 ak~~~qE~l~e------------~s~Lf~d~~~~--------a~~fsdKmeti~d~le~e-~rye~~~~ 314 (1100)
T KOG4271|consen 267 AKEEFQELLLE------------YSELFYDLELD--------AKPFSDKMETIQDVLEEE-ARYEAALK 314 (1100)
T ss_pred HHHHHHHHHHH------------Hhhhhhhhhhc--------cccccchhHHHHHHHHhH-HHHHHHHH
Confidence 66778888877 33444333222 346667777777777653 35555544
No 19
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=97.91 E-value=0.00042 Score=84.82 Aligned_cols=203 Identities=19% Similarity=0.366 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh---ccCChHHHHHHHHHHHHH
Q 001916 491 TAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALERERDRKDMFDDHLDE 567 (996)
Q Consensus 491 qlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfk---Av~~e~ERe~lFeeYi~~ 567 (996)
-.|+.|+.+.. +.--|+..|..|+... +...+.|..+...+.+.|.|. .|...+--.++|+-||.+
T Consensus 39 ~y~ea~~~~~q---------~~~~~k~~f~~lvs~~--v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~ 107 (1100)
T KOG4271|consen 39 PYHEASKFQEQ---------RNLTAKDKFETLVSQA--VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISE 107 (1100)
T ss_pred chHHHHHHHHH---------HhhhHHHHHHHHHHHH--hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHH
Confidence 35666665532 2334778899999865 455566999999999999987 355556677899999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhcccccCCCcHHHHHHHhhhhhhhhc----------------------------
Q 001916 568 LKQKERAKAQEER-KRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSR---------------------------- 618 (996)
Q Consensus 568 LkkkEke~~r~~r-kra~~ef~~lL~~~~~It~~TtW~ev~~~L~~D~Ry~~---------------------------- 618 (996)
|+.......++.. -+.-..|..||-..+.| ..-|.++.++++..|.|..
T Consensus 108 ~k~~~~~~r~~~~~~~l~~~f~~~l~~ld~~--e~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdl 185 (1100)
T KOG4271|consen 108 LKEEHIINRRRTYVPRLPEAFQVLLPNLDEI--EHLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDL 185 (1100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccc
Confidence 9887665544332 23346788888766544 3457788888877766532
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhhhhhhc
Q 001916 619 LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVAS 698 (996)
Q Consensus 619 L~~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~ 698 (996)
|+-.....+|+.|+..|-.+ ++++ ..|.+|+.+|.+. .-|+.+-.|.+..+.|.++..|.-+
T Consensus 186 l~l~ea~kv~eq~~~~~~n~---r~~i----------~~~~~fke~l~e~---~~itpg~P~eea~~~~~n~d~~qkl-- 247 (1100)
T KOG4271|consen 186 LDLVEAEKVYEQHLEKLRNE---RKRI----------EMRRAFKENLEES---PFITPGKPWEEARSFIMNEDFYQKL-- 247 (1100)
T ss_pred cccccHHHHHHHHHHHhhhh---hhhH----------HHHHHHHHhhhcC---CccCCCCCHHHhhchhhhhhHHHhc--
Confidence 11224467888777665442 2221 3578999999984 5799999999999999999888764
Q ss_pred CCCCCChHHHH----HHHHHHHHHhhHHHHHH
Q 001916 699 NTSGSTPKDLF----EDVVEELQKQFQEDKTR 726 (996)
Q Consensus 699 g~~gStpldLF----~D~VeeL~k~~~e~K~~ 726 (996)
..+.-.+.| .++++..++++.+.+..
T Consensus 248 --te~v~t~vy~r~qk~i~ekak~~~qE~l~e 277 (1100)
T KOG4271|consen 248 --TESVYTDVYGRHQKQIIEKAKEEFQELLLE 277 (1100)
T ss_pred --ccceeeccchHHHHHHHHHHHHHHHHHHHH
Confidence 345556677 67777776777776554
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.67 E-value=0.00016 Score=86.60 Aligned_cols=19 Identities=47% Similarity=0.973 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCccCCC
Q 001916 60 PGPPAPSHVPPPPQVMSLP 78 (996)
Q Consensus 60 p~~~~~~~~~~~~q~~~~~ 78 (996)
|.||+||+.+|||++.++|
T Consensus 546 ppPPlpggag~PPPPpplP 564 (1102)
T KOG1924|consen 546 PPPPLPGGAGPPPPPPPLP 564 (1102)
T ss_pred CCCCCCCCCCCCccCCCCC
Confidence 4556676555555533343
No 21
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=9.2e-05 Score=73.04 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=30.7
Q ss_pred CCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.+|....+ ..|++||||+.|++|+|+.|.+-
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 57899999998 79999999999999999999663
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.25 E-value=0.0013 Score=79.10 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.4
Q ss_pred HHHHHHHHHhh
Q 001916 583 NIIEYRKFLES 593 (996)
Q Consensus 583 a~~ef~~lL~~ 593 (996)
+-+.|..||+-
T Consensus 813 kSesFs~lLeL 823 (1102)
T KOG1924|consen 813 KSESFSKLLEL 823 (1102)
T ss_pred hhhhHHHHHHH
Confidence 34557777653
No 23
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00016 Score=71.31 Aligned_cols=34 Identities=35% Similarity=0.805 Sum_probs=30.3
Q ss_pred CCCCCcEEEEcCC-CCceeeccCccccccCCCCcc
Q 001916 195 GVQTDWKEHTSAD-GRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 195 ~~~~~W~e~~~~~-Gr~YYyN~~T~~s~WekP~~l 228 (996)
..+.+|+...+-. ||+||||+.|++|+||.|.+.
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 4578899999885 999999999999999999864
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.95 E-value=0.011 Score=65.84 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCCC
Q 001916 101 SYPPGLGGLGRPV 113 (996)
Q Consensus 101 ~~~p~~~~~~~~~ 113 (996)
+.+||+|.|-..+
T Consensus 303 gppPga~pPaph~ 315 (498)
T KOG4849|consen 303 GPPPGAGPPAPHN 315 (498)
T ss_pred CCCCCCCCCCccc
Confidence 3355555544443
No 25
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.03 Score=68.98 Aligned_cols=16 Identities=6% Similarity=0.445 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001916 834 GVFDEFVTQLKEQAKD 849 (996)
Q Consensus 834 ~~F~efi~~Lkek~~e 849 (996)
.-|.+|+-.|..+..+
T Consensus 989 ~sY~dyL~~~H~ki~~ 1004 (1007)
T KOG1984|consen 989 SSYVDYLCELHKKIQQ 1004 (1007)
T ss_pred cccchHHHHHHHHHHh
Confidence 3466777777776654
No 26
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.049 Score=68.83 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=4.2
Q ss_pred CChHHHHHH
Q 001916 265 LPDELKLAR 273 (996)
Q Consensus 265 ~P~~~~~~~ 273 (996)
.|+++..++
T Consensus 944 ~P~~~~~i~ 952 (1049)
T KOG0307|consen 944 IPEELQIIE 952 (1049)
T ss_pred CchHHHHHH
Confidence 455554443
No 27
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.16 Score=62.90 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001916 554 ERDRKDMFDDHLDELKQ 570 (996)
Q Consensus 554 e~ERe~lFeeYi~~Lkk 570 (996)
+.|...+++|......+
T Consensus 640 ~~D~~rl~nDL~~~vtk 656 (1007)
T KOG1984|consen 640 LTDGPRLLNDLVRNVTK 656 (1007)
T ss_pred cccHHHHHHHHHHhccc
Confidence 34677777777666554
No 28
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.92 E-value=0.0081 Score=71.24 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=15.6
Q ss_pred CCCCCCCccccCC------CCCCchhhhhhhhccc
Q 001916 944 HNSDRKKPRRLAS------TPESENESRHKRHRRD 972 (996)
Q Consensus 944 ~~~~~kk~~~~~~------~~~~~~~~~~~~~~~~ 972 (996)
|.|..|.+|||.+ -.-|..+.-|+||+|-
T Consensus 763 ~~s~~k~~rhhRS~~~~r~R~sSrd~H~~~~~Rrs 797 (878)
T KOG1847|consen 763 DYSKDKRSRHHRSRKHERHRDSSRDEHHHHRHRRS 797 (878)
T ss_pred hhccccccccccCcccccccccccCchhhhhhccc
Confidence 3555555566542 2335556666666654
No 29
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.71 E-value=0.06 Score=60.20 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 001916 7 NAPYSGAQVPHQPPMVG 23 (996)
Q Consensus 7 ~~~~~g~~~p~~~~~~~ 23 (996)
-|+++-+|||..|++-+
T Consensus 216 PPP~~~~Q~~P~P~m~~ 232 (498)
T KOG4849|consen 216 PPPLMMQQVRPTPLMSQ 232 (498)
T ss_pred CCCcccccCCCCCCCCC
Confidence 46666667766654433
No 30
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.033 Score=64.11 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCC---CceeeccCcc-ccccCCCCccchhh--------hccCCCCCcEEEECCCCCeEEEeCCCCeeecc
Q 001916 197 QTDWKEHTSADG---RRYYFNKRTR-VSTWDKPFELMTTI--------ERADASTDWKEFTSPDGRKYYYNKVTKQSKWS 264 (996)
Q Consensus 197 ~~~W~e~~~~~G---r~YYyN~~T~-~s~WekP~~l~~~~--------e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We 264 (996)
+.+|....+.+| ..||+|+.+. .|+|..|.....+. .+...-.+|....+++|..||||+..+.++|-
T Consensus 62 prewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ktt~l 141 (358)
T KOG0940|consen 62 PREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTGQRPFYKHILKKTTTL 141 (358)
T ss_pred CcceeeeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCCceehhhhhhcCcccc
Confidence 457999999998 9999999999 59999998774442 11122238999999999999999999999999
Q ss_pred CChHH
Q 001916 265 LPDEL 269 (996)
Q Consensus 265 ~P~~~ 269 (996)
+|.+.
T Consensus 142 dd~e~ 146 (358)
T KOG0940|consen 142 DDREA 146 (358)
T ss_pred Cchhh
Confidence 98764
No 31
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.74 Score=57.18 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001916 830 SICRGVFDEFVTQLKEQA 847 (996)
Q Consensus 830 ~~r~~~F~efi~~Lkek~ 847 (996)
.+.-.-|-+|+..|+.+-
T Consensus 868 s~~~~SY~efLq~lk~qv 885 (887)
T KOG1985|consen 868 SENSPSYYEFLQHLKAQV 885 (887)
T ss_pred hcCcHHHHHHHHHHHHHh
Confidence 444455777888887654
No 32
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=94.27 E-value=0.03 Score=61.81 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=46.3
Q ss_pred cccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHH
Q 001916 218 RVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 218 ~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
...+|..|..+++..+.......|-+-..++|.+||||..|++|.|..|....
T Consensus 130 ~a~q~~~~~g~v~~~e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ 182 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISF 182 (336)
T ss_pred ccchhhccccccchhhhhhhhhhcccccCCCCCCcceecCCCccccCCCCccc
Confidence 66899999999887766666789999999999999999999999999998543
No 33
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=2.3 Score=54.48 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHhhcCCCCCCHHHH
Q 001916 519 YKKMLEESVELTSSTRWSKA 538 (996)
Q Consensus 519 F~~lLee~~~I~~~TrW~~a 538 (996)
|..+|.=+..|. .|.|.++
T Consensus 1013 y~~a~~i~~~ia-tt~~~E~ 1031 (1049)
T KOG0307|consen 1013 YSEALQIHAQIA-TTEFDEC 1031 (1049)
T ss_pred HHHHHHHHHHHh-hcchhhh
Confidence 444444444444 4445444
No 34
>PHA03247 large tegument protein UL36; Provisional
Probab=93.32 E-value=5.8 Score=55.10 Aligned_cols=10 Identities=20% Similarity=0.457 Sum_probs=4.4
Q ss_pred CCCcHHHHHH
Q 001916 463 SDWTWDQALR 472 (996)
Q Consensus 463 s~~tWeka~~ 472 (996)
.-.+|-..+.
T Consensus 3003 ~~~~w~~~~~ 3012 (3151)
T PHA03247 3003 RVSSWASSLA 3012 (3151)
T ss_pred Ccchhhhhcc
Confidence 3444544443
No 35
>PHA03247 large tegument protein UL36; Provisional
Probab=92.79 E-value=5.6 Score=55.30 Aligned_cols=7 Identities=0% Similarity=-0.444 Sum_probs=3.4
Q ss_pred CCCCcEE
Q 001916 196 VQTDWKE 202 (996)
Q Consensus 196 ~~~~W~e 202 (996)
..++|.-
T Consensus 2851 ~~~g~~~ 2857 (3151)
T PHA03247 2851 PLGGSVA 2857 (3151)
T ss_pred CCCCccC
Confidence 3456643
No 36
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=92.35 E-value=1 Score=52.59 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 001916 11 SGAQVPHQPPMVGSMD 26 (996)
Q Consensus 11 ~g~~~p~~~~~~~~~~ 26 (996)
-|..||..+|.++--|
T Consensus 505 ~GNa~~~~~~A~~~~M 520 (654)
T COG5180 505 MGNAVPGMNPAMGMNM 520 (654)
T ss_pred ccccccccChhhcCCc
Confidence 4555666666555433
No 37
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=92.23 E-value=1.2 Score=54.24 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCC
Q 001916 47 PPFRPLMHPLPA 58 (996)
Q Consensus 47 ~~~~~q~~p~~~ 58 (996)
++|+|++-+|-+
T Consensus 414 ~pF~p~a~~~~n 425 (856)
T KOG3582|consen 414 PPFPPMAPPTAN 425 (856)
T ss_pred CCCCCCCCcccc
Confidence 346655555544
No 38
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=91.72 E-value=0.68 Score=56.45 Aligned_cols=74 Identities=18% Similarity=0.463 Sum_probs=61.1
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCccc---hhhhc--cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM---TTIER--ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~---~~~e~--~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
+.+..|+-..+..|-+||-++.|+.++|-+|.--+ .+.+. -..+-+|...-++---+|||.+.+..|+++-|-.
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kkaK~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvl 300 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAKPPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVL 300 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhcccCChhhcccccccccccccCCccceeEEecccchhhhhccchh
Confidence 46789999999999999999999999999998222 12222 3478899999887777899999999999999954
No 39
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=91.68 E-value=6.2 Score=42.66 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=5.8
Q ss_pred cccCCCCCCC
Q 001916 4 MANNAPYSGA 13 (996)
Q Consensus 4 ~~~~~~~~g~ 13 (996)
|-|.+.|+--
T Consensus 105 ~d~~~~~~~~ 114 (341)
T KOG2893|consen 105 MDNGPPMPTP 114 (341)
T ss_pred ccCCCCCCCC
Confidence 5566666544
No 40
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.22 E-value=4.2 Score=52.61 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=6.6
Q ss_pred cCCCCCCcccc
Q 001916 121 PSSYGQPQLIG 131 (996)
Q Consensus 121 ~~s~~~~~~~~ 131 (996)
|++.|+.+..+
T Consensus 1864 P~~~~r~~s~a 1874 (1958)
T KOG0391|consen 1864 PQIQGRAQSPA 1874 (1958)
T ss_pred CcccccCcCCC
Confidence 66666666443
No 41
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=90.78 E-value=0.79 Score=52.72 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 001916 52 LMHPLPA 58 (996)
Q Consensus 52 q~~p~~~ 58 (996)
|.+|.|+
T Consensus 412 q~~pl~~ 418 (462)
T KOG2199|consen 412 QQQPLQQ 418 (462)
T ss_pred hcCCCCC
Confidence 3444444
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=90.62 E-value=11 Score=48.08 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc----------c-ccCCCcHHHHHHHhhh
Q 001916 575 KAQEERKRNIIEYRKFLESCD----------F-IKANTQWRKVQDRLEA 612 (996)
Q Consensus 575 ~~r~~rkra~~ef~~lL~~~~----------~-It~~TtW~ev~~~L~~ 612 (996)
.++....+|++-|.+.|+... . +-..-.|.++.+.|..
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHH
Confidence 344555678888888887531 1 2345678887777643
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=90.45 E-value=0.23 Score=57.35 Aligned_cols=32 Identities=3% Similarity=-0.182 Sum_probs=29.5
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.|..+..++|=.||||.++.++.|+++.+.
T Consensus 452 lsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 452 LSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred eEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 56899999999999999999999999999865
No 44
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=89.87 E-value=7.4 Score=42.11 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 001916 96 VQALSSYPPGLGGLGR 111 (996)
Q Consensus 96 ~~~p~~~~p~~~~~~~ 111 (996)
..+|.-|||..|-+|.
T Consensus 168 ~~~pgv~mp~~g~pg~ 183 (341)
T KOG2893|consen 168 APAPGVYMPPPGMPGA 183 (341)
T ss_pred CCCCccccCCCCCCCC
Confidence 3455555555554443
No 45
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=1 Score=54.23 Aligned_cols=12 Identities=8% Similarity=0.434 Sum_probs=7.0
Q ss_pred EcCCCCceeecc
Q 001916 204 TSADGRRYYFNK 215 (996)
Q Consensus 204 ~~~~Gr~YYyN~ 215 (996)
-||...-|||-.
T Consensus 297 edP~n~mFyyrv 308 (728)
T KOG4592|consen 297 EDPPNNMFYYRV 308 (728)
T ss_pred cCCCccchHHHH
Confidence 345456777753
No 46
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=89.12 E-value=0.37 Score=58.58 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=33.2
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR 273 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~ 273 (996)
.++..|.-..++.|-+||.++.|+.++|-+|...+.|+
T Consensus 222 plp~nwemayte~gevyfiDhntkttswLdprl~kkaK 259 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAK 259 (984)
T ss_pred CCCccceEeEeecCeeEeeecccccceecChhhhcccC
Confidence 47889999999999999999999999999998544443
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.47 E-value=9.5 Score=48.76 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHHHHHH
Q 001916 485 TLGERKTAFNEYLGQKK 501 (996)
Q Consensus 485 t~~ERKqlFeeYl~~r~ 501 (996)
+..+-+.+|+..+.+..
T Consensus 357 dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLP 373 (1018)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 44677788888776543
No 48
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=88.17 E-value=1.5 Score=53.68 Aligned_cols=32 Identities=3% Similarity=-0.059 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHH-hcCcccc
Q 001916 450 NAFKALLESANVGSDWTWDQALRAI-INDRRYG 481 (996)
Q Consensus 450 ~aFk~ML~e~~V~s~~tWeka~~~i-i~DpRY~ 481 (996)
-..+..+...-|.--..|+.++-.. ...|.|.
T Consensus 321 ~~vidrM~~fV~~egp~fea~im~re~~nplF~ 353 (877)
T KOG0151|consen 321 LMVIDRMAEFVVREGPMFEAMIMERERGNPLFS 353 (877)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHhhccChhHH
Confidence 3445555555555555565544333 3445554
No 49
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=4.4 Score=50.71 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 001916 8 APYSGAQVP 16 (996)
Q Consensus 8 ~~~~g~~~p 16 (996)
+.||-+|.|
T Consensus 4 ~~yP~aq~~ 12 (887)
T KOG1985|consen 4 PVYPSAQNP 12 (887)
T ss_pred CCCCcccCC
Confidence 445555544
No 50
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=87.95 E-value=13 Score=41.56 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHH---HHHHHh
Q 001916 657 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRI---KDAVKL 733 (996)
Q Consensus 657 ~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~i---kd~lk~ 733 (996)
+..++...|.+. .+.....|-+-..+....+-... ..++..|+..|+. =|...-..+ ...|..
T Consensus 33 n~~~L~~kl~ei----~~~~~~pWiE~L~vts~~~~~~~---------~~d~~dD~~RE~a-Fy~qAl~av~~a~~~L~~ 98 (271)
T PF05890_consen 33 NKEALKQKLKEI----KLPKKLPWIETLDVTSPEPTDEQ---------IKDVNDDLKRELA-FYKQALEAVKEARPRLKK 98 (271)
T ss_pred CHHHHHHHHHHh----cccCCCCCeeEEeeecCccchhh---------hccccccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555566653 22446778765544433221111 1234455555442 222222222 234556
Q ss_pred cccccccCCCHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 734 RKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFF 795 (996)
Q Consensus 734 ~~i~v~stwt~eef~~~l~ed~r~~~l~~~nlk~iFe~li~r~kEKeeke~rk~rR~~~~F~ 795 (996)
.+|.+.--. |-|..+|.. +..|..|-..|+......+..+.+++.|....|-
T Consensus 99 ~gip~~RP~--DYfAEMvKS--------D~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKfg 150 (271)
T PF05890_consen 99 LGIPFKRPD--DYFAEMVKS--------DEHMEKVRQKLLKEQKRIEASEEARKQRELKKFG 150 (271)
T ss_pred cCCCccCCC--cchHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677665544 336666654 4567777777777665555555555445444444
No 51
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=87.92 E-value=29 Score=44.65 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.3
Q ss_pred HHHHHHHHH
Q 001916 449 KNAFKALLE 457 (996)
Q Consensus 449 k~aFk~ML~ 457 (996)
-+.|.+-|.
T Consensus 551 SArF~kHld 559 (982)
T PF03154_consen 551 SARFNKHLD 559 (982)
T ss_pred HHHHHHHhh
Confidence 467888774
No 52
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=87.78 E-value=4 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=11.6
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCc
Q 001916 11 SGAQVPHQP-PMVGSMDPPRGQGG 33 (996)
Q Consensus 11 ~g~~~p~~~-~~~~~~~~~~~~~~ 33 (996)
+|...|..+ .+.++-.||+|++-
T Consensus 397 Pg~~~p~~p~n~~p~~~pp~~~gp 420 (554)
T KOG0119|consen 397 PGTPIPRPPQNSAPSSIPPYGSGP 420 (554)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Confidence 555544433 34444456666643
No 53
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=87.66 E-value=8 Score=46.09 Aligned_cols=7 Identities=29% Similarity=0.183 Sum_probs=3.1
Q ss_pred CCccCCC
Q 001916 72 PQVMSLP 78 (996)
Q Consensus 72 ~q~~~~~ 78 (996)
+|++|+.
T Consensus 557 pqg~yv~ 563 (694)
T KOG4264|consen 557 PQGGYVS 563 (694)
T ss_pred CcccccC
Confidence 4554433
No 54
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=0.39 Score=51.87 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCcccc
Q 001916 939 KNPHRHNSDRKKPRRL 954 (996)
Q Consensus 939 ~~~~~~~~~~kk~~~~ 954 (996)
+.+++..-++|++|.-
T Consensus 243 rrs~~~~~~~krrr~~ 258 (306)
T KOG2985|consen 243 RRSKRKSRKEKRRRRS 258 (306)
T ss_pred hhhhhhhHhHHHhhhh
Confidence 3444444444444333
No 55
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=87.04 E-value=0.69 Score=51.54 Aligned_cols=40 Identities=35% Similarity=0.613 Sum_probs=34.4
Q ss_pred CCCCCCCCcEEEEcCCCCceeeccCccccccCCCCccchh
Q 001916 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTT 231 (996)
Q Consensus 192 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~ 231 (996)
........|.+.+.++|-.||||..|++|.|..|..+.+.
T Consensus 145 e~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ts 184 (336)
T KOG0150|consen 145 EANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISFTS 184 (336)
T ss_pred hhhhhhhhcccccCCCCCCcceecCCCccccCCCCccccc
Confidence 3344567899999999999999999999999999987654
No 56
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.52 E-value=2.4 Score=52.54 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 833 RGVFDEFVTQLKEQAKDYERKRKEEKAK 860 (996)
Q Consensus 833 ~~~F~efi~~Lkek~~e~er~r~~e~~~ 860 (996)
-.+|..|+.-++...-+.|-+.+-|+|.
T Consensus 716 f~~f~~F~~~~k~~~~ene~k~~le~A~ 743 (830)
T KOG1923|consen 716 FQLFVRFVRAYKMARQENEQKKKLEAAL 743 (830)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 3466666666665555555444434443
No 57
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.49 E-value=1.9 Score=52.04 Aligned_cols=37 Identities=32% Similarity=0.559 Sum_probs=19.4
Q ss_pred CCCCCCCCccccCCCCCCchhhhhhhhccccCCCCCC
Q 001916 943 RHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRK 979 (996)
Q Consensus 943 ~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (996)
||..-+|-+||.+.|-+----.||+|-++-|++.+|-
T Consensus 771 rhhRS~~~~r~R~sSrd~H~~~~~RrsRsr~~d~~r~ 807 (878)
T KOG1847|consen 771 RHHRSRKHERHRDSSRDEHHHHRHRRSRSRHEDSSRV 807 (878)
T ss_pred ccccCcccccccccccCchhhhhhccccccccchhhh
Confidence 4444444445555555555555666666665555543
No 58
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=85.37 E-value=4.7 Score=47.12 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 001916 103 PPGLGGLGRPV 113 (996)
Q Consensus 103 ~p~~~~~~~~~ 113 (996)
.|++|.|.++.
T Consensus 444 ~p~sg~PpAp~ 454 (543)
T KOG3537|consen 444 LPKSGPPPAPA 454 (543)
T ss_pred ccCCCCCCCCC
Confidence 78888876654
No 59
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=84.38 E-value=14 Score=48.16 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=9.8
Q ss_pred CCCccCCCCCCCCCCCC
Q 001916 71 PPQVMSLPNAQPSNHIP 87 (996)
Q Consensus 71 ~~q~~~~~~~~~~~~~~ 87 (996)
++..++|+.+...+.+.
T Consensus 1777 ~qtl~~~~v~a~Sg~~~ 1793 (1958)
T KOG0391|consen 1777 SQTLTSMPVGAVSGNVI 1793 (1958)
T ss_pred cccceeeeeeecccCcc
Confidence 34566777666555444
No 60
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=83.84 E-value=0.33 Score=62.06 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 001916 556 DRKDMFDDHLDEL 568 (996)
Q Consensus 556 ERe~lFeeYi~~L 568 (996)
.+..|+.-.+..|
T Consensus 601 q~~~il~~i~~~l 613 (808)
T PF09770_consen 601 QRLTILTMIFRHL 613 (808)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 4445544444444
No 61
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.76 E-value=6 Score=45.17 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 001916 54 HPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSS 90 (996)
Q Consensus 54 ~p~~~~p~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 90 (996)
.|.+-+|++|.|++.|||.|-++-|.. .+|+++.+
T Consensus 424 ~pt~~~PprPppqggppP~g~~~~p~~--~~hl~~~g 458 (488)
T KOG3895|consen 424 SPTRRLPPRPPPQGGPPPRGHMSDPVG--SRHLDHDG 458 (488)
T ss_pred CCCCCCCCCCCCCCCCCCccccCCccc--cccCCCCC
Confidence 444556666677777777765554443 34555433
No 62
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=83.67 E-value=13 Score=45.93 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=8.4
Q ss_pred ccHHHHHHHHHHH
Q 001916 622 MDRLEIFQEYLND 634 (996)
Q Consensus 622 ~DrLelFed~I~~ 634 (996)
+-++.||++.+..
T Consensus 720 LIrmgIFeE~LAR 732 (1034)
T KOG0608|consen 720 LIRMGIFEEDLAR 732 (1034)
T ss_pred HHHhccCHHHHHH
Confidence 3567788876544
No 63
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=83.24 E-value=3.4 Score=49.61 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC
Q 001916 44 PLQPPFRPLMHP 55 (996)
Q Consensus 44 ~~~~~~~~q~~p 55 (996)
++++|++++|||
T Consensus 402 qq~~Q~~qp~hp 413 (757)
T KOG4368|consen 402 QQHPQFNQPPHP 413 (757)
T ss_pred hhccccCCCCCc
Confidence 344555555555
No 64
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=83.06 E-value=4.7 Score=50.61 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=3.7
Q ss_pred CCCCcee
Q 001916 206 ADGRRYY 212 (996)
Q Consensus 206 ~~Gr~YY 212 (996)
+.|-.+|
T Consensus 921 ~~gs~~~ 927 (1114)
T KOG3753|consen 921 PHGSLFY 927 (1114)
T ss_pred CCccccC
Confidence 3455555
No 65
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=82.33 E-value=1.8 Score=56.38 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 001916 8 APYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPA 58 (996)
Q Consensus 8 ~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~g~p~q~~~~~~~~q~~p~~~ 58 (996)
++|+|.| ++.++.+.+||+|.+| ++|+-+|+.. -+.|.+||+.
T Consensus 1987 ~~~~glq---qa~g~~~~m~p~g~~m---p~~qs~q~~~--~~~~l~p~~~ 2029 (2220)
T KOG3598|consen 1987 AAAAGLQ---QAMGNTSSMPPSGPPM---PMGQSMQSAG--ATQQLQPMQK 2029 (2220)
T ss_pred hhhhhhh---hccCCCCCcCCCCCCC---CcccccccCC--CceecCchHh
Confidence 5566665 5566666677666654 4553333322 2234456665
No 66
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=82.05 E-value=4.4 Score=52.23 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=20.2
Q ss_pred CCCcccccCCCCCCccccccccCCC--CCCCccccCC
Q 001916 114 AASYTFAPSSYGQPQLIGNVNIGSQ--QPMSQMHVPS 148 (996)
Q Consensus 114 ~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~ 148 (996)
+++++|.=.-||-+..+.++-++ | +.+|||+|+.
T Consensus 1003 ~P~~~fi~~G~~n~~~gs~~d~~-y~~~~tpQ~~t~~ 1038 (2238)
T KOG3600|consen 1003 SPNFNFIYNGMGNQLMGSIHDHQ-YHQQQTPQQQTQQ 1038 (2238)
T ss_pred CCCcchhhccCCCcccCcccchh-hhhhcCccccccc
Confidence 44555555556665444444444 4 7788888875
No 67
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=81.36 E-value=20 Score=43.40 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=3.3
Q ss_pred CCCCccch
Q 001916 223 DKPFELMT 230 (996)
Q Consensus 223 ekP~~l~~ 230 (996)
+-|..++.
T Consensus 519 dlpaglm~ 526 (757)
T KOG4368|consen 519 DLPAGLMA 526 (757)
T ss_pred ccchhccc
Confidence 33444443
No 68
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.56 E-value=1.1 Score=48.55 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=16.8
Q ss_pred ccCC-CCCCCCCCCCCccccCCCCCCc
Q 001916 936 DRSK-NPHRHNSDRKKPRRLASTPESE 961 (996)
Q Consensus 936 ~~~~-~~~~~~~~~kk~~~~~~~~~~~ 961 (996)
.+++ ++++.+++|.-+|+|++..+++
T Consensus 243 rrs~~~~~~~krrr~~r~~~~~~~~s~ 269 (306)
T KOG2985|consen 243 RRSKRKSRKEKRRRRSRRNHSDDSDSE 269 (306)
T ss_pred hhhhhhhHhHHHhhhhccccCCcchhh
Confidence 5654 5666677777778887555444
No 69
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=80.41 E-value=1.3 Score=47.26 Aligned_cols=33 Identities=27% Similarity=0.633 Sum_probs=30.3
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
+++.+|..-+|..||+||.+++|..|-|..|-+
T Consensus 93 PLPpgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 93 PLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred CCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence 678999988888999999999999999999965
No 70
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.02 E-value=0.88 Score=47.34 Aligned_cols=41 Identities=29% Similarity=0.563 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCccccCCCC-CCchhhhhhhhccccCCCCCCCCCC
Q 001916 940 NPHRHNSDRKKPRRLASTP-ESENESRHKRHRRDNRNGSRKNGDH 983 (996)
Q Consensus 940 ~~~~~~~~~kk~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (996)
|.+||-.+-+.+|||.++. +|++ | |+|++|.|..+||.-++
T Consensus 193 kE~r~~~r~~r~RHh~hs~~ds~s--R-kKHk~d~r~~~RR~Hd~ 234 (238)
T KOG4520|consen 193 KEPRHDRRTHRSRHHRHSTTDSHS--R-KKHKRDDRYERRREHDP 234 (238)
T ss_pred ccccCCcccccccccccccccccc--h-hhhccccchhhhhccCC
Confidence 3345656667778887655 6665 4 34888888788885443
No 71
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.54 E-value=47 Score=40.98 Aligned_cols=20 Identities=40% Similarity=0.736 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 001916 52 LMHPLPARPGPPAPSHVPPP 71 (996)
Q Consensus 52 q~~p~~~~p~~~~~~~~~~~ 71 (996)
+|-..+||+.+|++.++||+
T Consensus 457 r~r~~~yqm~~P~~~~~pP~ 476 (861)
T KOG3161|consen 457 RMRSSPYQMPPPQPYGPPPP 476 (861)
T ss_pred chhcCCCCCCCCCcCCCCCC
Confidence 44445556655655544433
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.24 E-value=5.7 Score=49.28 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCC
Q 001916 10 YSGAQVPHQPPM 21 (996)
Q Consensus 10 ~~g~~~p~~~~~ 21 (996)
.-|+++|.+-||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 347777766555
No 73
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=77.90 E-value=49 Score=39.72 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=3.9
Q ss_pred cCCCCCCCC
Q 001916 146 VPSISAGGQ 154 (996)
Q Consensus 146 ~~~~~~~~~ 154 (996)
.|++.+|.+
T Consensus 452 ~Pp~~aga~ 460 (569)
T KOG3671|consen 452 APPQGAGAA 460 (569)
T ss_pred CCCCccCCC
Confidence 344444433
No 74
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=77.24 E-value=16 Score=44.58 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 001916 16 PHQPPMVGSMDPPRGQGGL 34 (996)
Q Consensus 16 p~~~~~~~~~~~~~~~~~~ 34 (996)
|+.+|+++++.++||+..|
T Consensus 395 ~~~~~~a~gp~~q~~~~~p 413 (600)
T KOG1676|consen 395 PYPNPGAGGPQTQFGNYGP 413 (600)
T ss_pred CCCCCCcCCCCCCCCCCCC
Confidence 3333444444455555444
No 75
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=76.95 E-value=13 Score=43.96 Aligned_cols=7 Identities=0% Similarity=0.154 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 001916 97 QALSSYP 103 (996)
Q Consensus 97 ~~p~~~~ 103 (996)
+.|..+|
T Consensus 585 ~vP~~~M 591 (654)
T COG5180 585 HVPAGFM 591 (654)
T ss_pred CCCcccc
Confidence 3333333
No 76
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.72 E-value=9.9 Score=47.40 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHHHHHH
Q 001916 622 MDRLEIFQEYLNDLEKE 638 (996)
Q Consensus 622 ~DrLelFed~I~~Leke 638 (996)
+..+..|.+-|+-+++.
T Consensus 620 lp~l~~F~~el~~~eKa 636 (830)
T KOG1923|consen 620 LPALQLFFSELDFVEKA 636 (830)
T ss_pred hHHHHhhHHHhhccchh
Confidence 35556666666555543
No 77
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=76.48 E-value=1.1e+02 Score=39.59 Aligned_cols=8 Identities=13% Similarity=-0.218 Sum_probs=3.6
Q ss_pred CCChHHHH
Q 001916 677 KTNWRDYC 684 (996)
Q Consensus 677 ~T~W~d~~ 684 (996)
...|-|.+
T Consensus 759 ~~~~~e~~ 766 (982)
T PF03154_consen 759 VPNPLEHF 766 (982)
T ss_pred CCccchhh
Confidence 34454443
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.50 E-value=27 Score=43.73 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=9.9
Q ss_pred HHHHHhcCccccCCChHHHH
Q 001916 665 MEADVALGTLTAKTNWRDYC 684 (996)
Q Consensus 665 L~e~~~~g~Ita~T~W~d~~ 684 (996)
|-++.+.|.--+.+.=-+++
T Consensus 257 liema~sGq~lP~tlP~E~V 276 (1118)
T KOG1029|consen 257 LIEMAKSGQPLPKTLPPELV 276 (1118)
T ss_pred HHHHHhcCCCCCCCCChhhc
Confidence 33445556554555544444
No 79
>PHA03378 EBNA-3B; Provisional
Probab=75.46 E-value=64 Score=40.08 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCC
Q 001916 97 QALSSYPPGLGGLGRP 112 (996)
Q Consensus 97 ~~p~~~~p~~~~~~~~ 112 (996)
.+|+--.|..|.||..
T Consensus 739 ~aP~p~~PPa~aP~~~ 754 (991)
T PHA03378 739 AAPGRARPPAAAPGRA 754 (991)
T ss_pred CCCCCCCCCCCCCccc
Confidence 4444444455555543
No 80
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=74.74 E-value=15 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=10.9
Q ss_pred CCCCCCCc-cCCCCCCCCCCCCC
Q 001916 67 HVPPPPQV-MSLPNAQPSNHIPP 88 (996)
Q Consensus 67 ~~~~~~q~-~~~~~~~~~~~~~~ 88 (996)
|-|.+-|. +-...+|+|.+||+
T Consensus 1243 HlPa~vq~y~~~~siq~nvplPP 1265 (1387)
T KOG1016|consen 1243 HLPAQVQEYIDLDSIQPNVPLPP 1265 (1387)
T ss_pred CCccccccccccccCCCCCCCCC
Confidence 54444442 22234567777773
No 81
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=74.28 E-value=78 Score=39.52 Aligned_cols=10 Identities=40% Similarity=0.398 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 001916 707 DLFEDVVEEL 716 (996)
Q Consensus 707 dLF~D~VeeL 716 (996)
+|=.+||-||
T Consensus 729 ~LARFYIAEl 738 (1034)
T KOG0608|consen 729 DLARFYIAEL 738 (1034)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 82
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=74.22 E-value=54 Score=39.79 Aligned_cols=40 Identities=8% Similarity=-0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCcHHHHHHHHhcCccccccCC
Q 001916 445 KLEAKNAFKALLES-ANVGSDWTWDQALRAIINDRRYGALRT 485 (996)
Q Consensus 445 keEAk~aFk~ML~e-~~V~s~~tWeka~~~ii~DpRY~al~t 485 (996)
++.-...|. |+++ ......--|-..-+++..|++|++.+.
T Consensus 488 ~d~~~~~r~-~~~~~e~s~~r~~~~~kskr~~~~~~~~s~~~ 528 (538)
T KOG1049|consen 488 KDRHREHRR-WDENEESSSGRREDHSKSKRSGTHLEEYSSRS 528 (538)
T ss_pred hhhcchhhh-hhhccccccccchhcchhhhccccchhhccCC
Confidence 334455666 7764 456666678788888889999988764
No 83
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=74.08 E-value=70 Score=40.56 Aligned_cols=7 Identities=57% Similarity=0.975 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 001916 103 PPGLGGL 109 (996)
Q Consensus 103 ~p~~~~~ 109 (996)
.||+|+.
T Consensus 644 ~~~~~~~ 650 (756)
T KOG2375|consen 644 VPGKGGN 650 (756)
T ss_pred ccccCCc
Confidence 4454444
No 84
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=73.71 E-value=1.1 Score=57.55 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=0.0
Q ss_pred ccchhhh
Q 001916 227 ELMTTIE 233 (996)
Q Consensus 227 ~l~~~~e 233 (996)
.||++.|
T Consensus 360 gLMt~rD 366 (808)
T PF09770_consen 360 GLMTPRD 366 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3566554
No 85
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=73.11 E-value=4 Score=46.99 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=6.6
Q ss_pred CCCccccCCCCCC
Q 001916 948 RKKPRRLASTPES 960 (996)
Q Consensus 948 ~kk~~~~~~~~~~ 960 (996)
.+++|.|-++|+-
T Consensus 359 ~~~~r~hkHs~e~ 371 (453)
T KOG3794|consen 359 DKRSRTHKHSPEK 371 (453)
T ss_pred ccccccccCChhh
Confidence 3444555555654
No 86
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=72.41 E-value=16 Score=44.17 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=7.2
Q ss_pred ccccCCCCCCCC
Q 001916 3 EMANNAPYSGAQ 14 (996)
Q Consensus 3 ~~~~~~~~~g~~ 14 (996)
+|-|||+-.|+.
T Consensus 205 ql~~~p~qq~~~ 216 (742)
T KOG4274|consen 205 QLQQQPQQQQHL 216 (742)
T ss_pred hhhcCCcccccc
Confidence 456677666554
No 87
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=72.03 E-value=3e+02 Score=35.47 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=16.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHH
Q 001916 619 LDKMDRLEIFQEYLNDLEKEEEEQ 642 (996)
Q Consensus 619 L~~~DrLelFed~I~~LekeeeE~ 642 (996)
+.++|...|-..-|..|+++..|.
T Consensus 659 ~e~lD~d~i~~~q~eel~Ke~kEl 682 (988)
T KOG2072|consen 659 LEKLDADQIKARQIEELEKERKEL 682 (988)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777765554
No 88
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=71.86 E-value=42 Score=33.56 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccC
Q 001916 490 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALE 552 (996)
Q Consensus 490 KqlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~ 552 (996)
.+||+.|==++.++-.+++..+++ --++|+..|++.. =.++|+|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~Rq~-e~~~~~~~lKe~s--------------kSdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENRELRQQ-EFDEFMKILKETS--------------KSDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHHHHH-HHHHHHHHHHHHh--------------ccCCCceeeCC
Confidence 689999988888776665544443 3477888888752 14689999754
No 89
>PHA01929 putative scaffolding protein
Probab=70.19 E-value=17 Score=40.02 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.4
Q ss_pred CCCCCC
Q 001916 63 PAPSHV 68 (996)
Q Consensus 63 ~~~~~~ 68 (996)
+|.+|+
T Consensus 64 ~m~~hv 69 (306)
T PHA01929 64 AMTPHV 69 (306)
T ss_pred cccccc
Confidence 344443
No 90
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=67.22 E-value=1.2e+02 Score=35.50 Aligned_cols=9 Identities=44% Similarity=0.556 Sum_probs=3.8
Q ss_pred CCCCccccc
Q 001916 124 YGQPQLIGN 132 (996)
Q Consensus 124 ~~~~~~~~~ 132 (996)
|+++++.++
T Consensus 188 y~~~~~~~p 196 (358)
T PF07223_consen 188 YSQPQNYPP 196 (358)
T ss_pred CCCCCCCCC
Confidence 444444433
No 91
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=67.04 E-value=40 Score=41.89 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCccc
Q 001916 103 PPGLGGLGRPVAASYTF 119 (996)
Q Consensus 103 ~p~~~~~~~~~~~~~~~ 119 (996)
.+++.+.|++.+..|.|
T Consensus 261 e~~~~gSgnp~~q~~~~ 277 (944)
T KOG4307|consen 261 ENHIQGSGNPRVQGGDS 277 (944)
T ss_pred ccccccCCChhhhCCch
Confidence 45666777766666653
No 92
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=66.50 E-value=6.2 Score=48.36 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=20.9
Q ss_pred ccccccccCCCCCCCChh--hhccCCCCCCCCCCCCCccccC
Q 001916 916 DKKHRKRHQSAHDSLDEN--EKDRSKNPHRHNSDRKKPRRLA 955 (996)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kk~~~~~ 955 (996)
.|-+|.|+++.+.|++++ +-..+|.+.-|.+++|+.|-|+
T Consensus 132 ~rs~r~rsr~~~~s~~~~~~r~~~~k~~~~~~kdh~~~r~~~ 173 (681)
T KOG3702|consen 132 RRSRRWRSRPTNVSEIPPLLRSEVHKIHNYEKKDHKHRRNKR 173 (681)
T ss_pred hhhhhhhccCCcccccchhhhhhhhccCCcccCcchhccccc
Confidence 334444444444444321 1134566666677777777665
No 93
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=65.77 E-value=3 Score=51.00 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=7.9
Q ss_pred cccccCCCCCcccccccc
Q 001916 906 NDSKRSGKDNDKKHRKRH 923 (996)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~ 923 (996)
+|+++.+|.+.+||++.|
T Consensus 830 kkhkk~~~~k~rk~kkSs 847 (883)
T KOG2138|consen 830 KKHKKKGKQKNRKPKKSS 847 (883)
T ss_pred hhhcccchhhccCccccc
Confidence 334443434445555533
No 94
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=64.47 E-value=2.8 Score=49.02 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=18.5
Q ss_pred CCCCCeEEEeCCCCeeeccCChHHH
Q 001916 246 SPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 246 ~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
+...|.|+||...|+|||++|..+.
T Consensus 380 ~~~eKLYHyN~~GGtSTW~LP~~w~ 404 (425)
T PF12905_consen 380 DDEEKLYHYNPDGGTSTWTLPDSWA 404 (425)
T ss_dssp GGG-EEEEEESS-CEEEEE--HHHC
T ss_pred CCcceeEEEcCCCCeeeeeCCcccc
Confidence 3457999999999999999999885
No 95
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=64.12 E-value=37 Score=42.47 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=9.5
Q ss_pred CChHHHHHHHHHHHHHhhHHHHHHHHH
Q 001916 703 STPKDLFEDVVEELQKQFQEDKTRIKD 729 (996)
Q Consensus 703 StpldLF~D~VeeL~k~~~e~K~~ikd 729 (996)
...|++++..|..|+..|...+.++..
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~~ 348 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILEL 348 (619)
T ss_dssp -------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999998777776665543
No 96
>PHA03378 EBNA-3B; Provisional
Probab=63.11 E-value=1.1e+02 Score=38.10 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCCC
Q 001916 98 ALSSYPPGLGGLGRP 112 (996)
Q Consensus 98 ~p~~~~p~~~~~~~~ 112 (996)
+|.--.|..|.||.+
T Consensus 760 AP~~~~PPa~tPgap 774 (991)
T PHA03378 760 APGRARPPAAAPGAP 774 (991)
T ss_pred CCCCCCCCCCCCCCC
Confidence 333334444444444
No 97
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=62.97 E-value=1.2e+02 Score=36.89 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=7.4
Q ss_pred CCCCCCCccccccccc
Q 001916 166 STPVQPTDEQMAATTA 181 (996)
Q Consensus 166 ~~~~~~~~~~~~~~~~ 181 (996)
.+=.++++.+..-+++
T Consensus 610 ptyfvpP~qmt~g~~~ 625 (694)
T KOG4264|consen 610 PTYFVPPPQMTRGSTH 625 (694)
T ss_pred cccccCccccccCCCC
Confidence 3344555555444444
No 98
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.71 E-value=13 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=10.5
Q ss_pred CCeEEEeCCCCeee-ccCChHHHHHH
Q 001916 249 GRKYYYNKVTKQSK-WSLPDELKLAR 273 (996)
Q Consensus 249 Gr~YyyN~~T~es~-We~P~~~~~~~ 273 (996)
..-|||-.- .+.+ =++|.+...++
T Consensus 301 n~mFyyrvy-~iIq~g~~pse~qa~~ 325 (728)
T KOG4592|consen 301 NNMFYYRVY-EIIQLGEDPSEFQALR 325 (728)
T ss_pred ccchHHHHH-HHHHhcCCchhHHHHH
Confidence 355666321 1222 34555555444
No 99
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=58.33 E-value=32 Score=38.98 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 001916 559 DMFDDHLDELKQKER 573 (996)
Q Consensus 559 ~lFeeYi~~LkkkEk 573 (996)
.|=.|||+.|-.+|-
T Consensus 340 ALRDDYVRRLl~kEa 354 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEA 354 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344568888876543
No 100
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=57.47 E-value=52 Score=38.58 Aligned_cols=12 Identities=42% Similarity=0.315 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHH
Q 001916 444 NKLEAKNAFKAL 455 (996)
Q Consensus 444 tkeEAk~aFk~M 455 (996)
|+.+|-.+|++=
T Consensus 471 tkDDaY~~FMkE 482 (487)
T KOG4672|consen 471 TKDDAYNAFMKE 482 (487)
T ss_pred cchHHHHHHHHH
Confidence 345555666553
No 101
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=57.32 E-value=12 Score=43.41 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=3.2
Q ss_pred CCCCCCc
Q 001916 955 ASTPESE 961 (996)
Q Consensus 955 ~~~~~~~ 961 (996)
+.+|-+-
T Consensus 377 sr~~~~R 383 (479)
T KOG4676|consen 377 SRSPSPR 383 (479)
T ss_pred CCCCCcc
Confidence 4444444
No 102
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.21 E-value=88 Score=38.74 Aligned_cols=12 Identities=8% Similarity=-0.180 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCC
Q 001916 101 SYPPGLGGLGRP 112 (996)
Q Consensus 101 ~~~p~~~~~~~~ 112 (996)
+|.+++|.|-..
T Consensus 532 g~~~v~~~Pps~ 543 (861)
T KOG3161|consen 532 GYYSVACQPPSE 543 (861)
T ss_pred cceecccCCCCC
Confidence 444555554443
No 103
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=54.15 E-value=10 Score=44.35 Aligned_cols=33 Identities=6% Similarity=-0.044 Sum_probs=28.6
Q ss_pred CCCcEEEECCCCCeEEEeCCCCeeeccCChHHH
Q 001916 238 STDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 238 ~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
-+-|..+...+|=.|||+=.|.++.|+.++++.
T Consensus 452 lsakvfidk~tnlskcfgfvSyen~~sa~~aI~ 484 (510)
T KOG0144|consen 452 LSAKVFIDKVTNLSKCFGFVSYENAQSAQNAIS 484 (510)
T ss_pred eEEEEEEecccCHhhhcCcccccchhhhHHHHH
Confidence 456777777899999999999999999998875
No 104
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=50.97 E-value=4e+02 Score=34.03 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q 001916 767 LIFDDLLIKVKEK 779 (996)
Q Consensus 767 ~iFe~li~r~kEK 779 (996)
..|++|+.++.-|
T Consensus 903 ~~~e~~~~~l~sk 915 (1259)
T KOG0163|consen 903 KNYEKLVKRLDSK 915 (1259)
T ss_pred HHHHHHHHHhhhh
Confidence 4567777776443
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.99 E-value=92 Score=39.06 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=4.4
Q ss_pred CCCCCCCCCc
Q 001916 24 SMDPPRGQGG 33 (996)
Q Consensus 24 ~~~~~~~~~~ 33 (996)
++.+|.|+++
T Consensus 377 ~~~~~~~~~~ 386 (624)
T PRK14959 377 GASAPSGSAA 386 (624)
T ss_pred CCCCCCCCCC
Confidence 4444444444
No 106
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=49.84 E-value=11 Score=43.61 Aligned_cols=7 Identities=14% Similarity=-0.178 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 001916 452 FKALLES 458 (996)
Q Consensus 452 Fk~ML~e 458 (996)
|+.||.+
T Consensus 96 af~~l~~ 102 (479)
T KOG4676|consen 96 AFVELAD 102 (479)
T ss_pred HHHhcCc
Confidence 4444444
No 107
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=48.90 E-value=1e+02 Score=35.08 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001916 491 TAFNEYLGQKKKQDAE 506 (996)
Q Consensus 491 qlFeeYl~~r~keEke 506 (996)
.|=++|+..+..+|..
T Consensus 340 ALRDDYVRRLl~kEaq 355 (407)
T PF04625_consen 340 ALRDDYVRRLLHKEAQ 355 (407)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777776654433
No 108
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=47.38 E-value=1.9e+02 Score=35.78 Aligned_cols=8 Identities=50% Similarity=1.007 Sum_probs=3.6
Q ss_pred cccCCCCC
Q 001916 4 MANNAPYS 11 (996)
Q Consensus 4 ~~~~~~~~ 11 (996)
.+.|-.|+
T Consensus 390 ~~~n~~~~ 397 (600)
T KOG1676|consen 390 IAPNTPYP 397 (600)
T ss_pred cCCCCCCC
Confidence 34444444
No 109
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=47.31 E-value=58 Score=37.98 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 001916 838 EFVTQLKEQAKDY 850 (996)
Q Consensus 838 efi~~Lkek~~e~ 850 (996)
+|...|-++.+++
T Consensus 215 ~f~sS~tek~KeK 227 (453)
T KOG3794|consen 215 EFSSSLTEKQKEK 227 (453)
T ss_pred HhhhhhhHHHHHH
Confidence 3444554444333
No 110
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=47.22 E-value=2.5e+02 Score=32.10 Aligned_cols=6 Identities=67% Similarity=0.866 Sum_probs=2.2
Q ss_pred CCCCCC
Q 001916 38 AGFPSQ 43 (996)
Q Consensus 38 ~g~p~q 43 (996)
+|-|.|
T Consensus 282 a~ep~q 287 (389)
T KOG2932|consen 282 AGEPQQ 287 (389)
T ss_pred cCCCCC
Confidence 333333
No 111
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=47.09 E-value=2.2e+02 Score=34.24 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q 001916 447 EAKNAFKALLE 457 (996)
Q Consensus 447 EAk~aFk~ML~ 457 (996)
+-...|.+||.
T Consensus 408 ~~vqqfy~lLt 418 (605)
T KOG4217|consen 408 LHVQQFYDLLT 418 (605)
T ss_pred HHHHHHHHHhh
Confidence 34577888885
No 112
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=46.75 E-value=39 Score=42.08 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=24.2
Q ss_pred HHHHhcCccccccCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001916 471 LRAIINDRRYGALRTLGERKTAFNEYLGQK-KKQDAEERRLKLKKARDDYKKMLEE 525 (996)
Q Consensus 471 ~~~ii~DpRY~al~t~~ERKqlFeeYl~~r-~keEkeekr~k~kkare~F~~lLee 525 (996)
.++|.+++||..-.-..-|+.+=++--..- ++.+.+.+......-|+.|..||..
T Consensus 387 frmfknggrwipppin~~~~~mp~ee~~~t~a~~e~~~k~~Ltd~qRdklE~liR~ 442 (877)
T KOG0151|consen 387 FRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGESEDKGALTDLQRDKLEDLIRG 442 (877)
T ss_pred hhhcccCceecCCCCCcccccCchhhhcccccccchhhhcccchHHHHHHHHHHHh
Confidence 345566777763221123333333222111 1112233333344456777778774
No 113
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.55 E-value=2.9e+02 Score=33.34 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=32.7
Q ss_pred ChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 001916 679 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIK 728 (996)
Q Consensus 679 ~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~ik 728 (996)
.|+.|...|--.+.=+-.-.|.-..|....|++....+..+..+.+++-+
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqk 51 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQK 51 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46667666643332111223667788899999999998877777766543
No 114
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.01 E-value=1.4e+02 Score=38.83 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.2
Q ss_pred CccCCCCCCCCCCCCC
Q 001916 73 QVMSLPNAQPSNHIPP 88 (996)
Q Consensus 73 q~~~~~~~~~~~~~~~ 88 (996)
+-.+..+++++.|+.+
T Consensus 969 ~~~~~~ai~~skpl~~ 984 (1080)
T KOG0566|consen 969 LSSSTDAIPPSKPLIP 984 (1080)
T ss_pred ccCccccCCCCCCCCC
Confidence 3344555556655553
No 115
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=45.19 E-value=75 Score=40.28 Aligned_cols=8 Identities=75% Similarity=1.007 Sum_probs=3.9
Q ss_pred cccccCCC
Q 001916 117 YTFAPSSY 124 (996)
Q Consensus 117 ~~~~~~s~ 124 (996)
|--+||||
T Consensus 1337 yi~aPSsy 1344 (1387)
T KOG1016|consen 1337 YIGAPSSY 1344 (1387)
T ss_pred hcCCCccc
Confidence 33445555
No 116
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.48 E-value=1.2e+02 Score=35.30 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.1
Q ss_pred cCCCCCCc
Q 001916 121 PSSYGQPQ 128 (996)
Q Consensus 121 ~~s~~~~~ 128 (996)
+++.||..
T Consensus 472 ~~t~~q~~ 479 (488)
T KOG3895|consen 472 DDTMGQLK 479 (488)
T ss_pred ccccccCC
Confidence 33344333
No 117
>KOG4043 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.22 E-value=6.5 Score=40.19 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=18.4
Q ss_pred CCCCCCcccccccccccCCCCCcccccc
Q 001916 894 DGADSDHDDSAENDSKRSGKDNDKKHRK 921 (996)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (996)
|+.+.|.....|+|.|||..|++||++|
T Consensus 164 d~a~~ET~e~~hKK~KkhedDKeRKK~K 191 (214)
T KOG4043|consen 164 DFADDETEEGFHKKHKKHEDDKERKKEK 191 (214)
T ss_pred ccccchhhhcchhhhhhhhhhHHHHHHH
Confidence 4444444446678888888777777666
No 118
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=42.94 E-value=2.5e+02 Score=33.19 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCCc
Q 001916 20 PMVGSMDPPRGQGG 33 (996)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (996)
|+...-+||||-++
T Consensus 341 ~~~~~~~~p~~~~~ 354 (531)
T KOG1960|consen 341 STNRESDEPIHLCI 354 (531)
T ss_pred CCCCCCCCCccccc
Confidence 33333444544443
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=42.59 E-value=1.8e+02 Score=38.71 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.9
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 001916 701 SGSTPKDLFEDVVEELQKQ 719 (996)
Q Consensus 701 ~gStpldLF~D~VeeL~k~ 719 (996)
+....+|+.=.+|..|+=+
T Consensus 918 s~DeL~d~LPQlVQALK~E 936 (1639)
T KOG0905|consen 918 SNDELLDYLPQLVQALKFE 936 (1639)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4444455555556655533
No 120
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=42.20 E-value=28 Score=43.30 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCCcEEEEcCC-CCceeeccCccccccCC---CCccc-hh--------hh--ccCCCCCcEEEEC-CCCCeEEEeCCCC
Q 001916 196 VQTDWKEHTSAD-GRRYYFNKRTRVSTWDK---PFELM-TT--------IE--RADASTDWKEFTS-PDGRKYYYNKVTK 259 (996)
Q Consensus 196 ~~~~W~e~~~~~-Gr~YYyN~~T~~s~Wek---P~~l~-~~--------~e--~~~~~~~W~e~~~-~~Gr~YyyN~~T~ 259 (996)
....|..+.+.. |+.|||+..|+.++|+. +..-. .. .+ .....+.|..+.. ..+...|+|..++
T Consensus 269 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 348 (650)
T KOG1450|consen 269 KSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHN 348 (650)
T ss_pred CCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCC
Confidence 356799999885 99999999999999995 21111 10 01 1246778988877 5899999999999
Q ss_pred eeeccCChHH
Q 001916 260 QSKWSLPDEL 269 (996)
Q Consensus 260 es~We~P~~~ 269 (996)
+|.|..+-..
T Consensus 349 et~~~d~~~~ 358 (650)
T KOG1450|consen 349 ETSFEDWSSN 358 (650)
T ss_pred Cccccchhhc
Confidence 9999987554
No 121
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=6e+02 Score=29.26 Aligned_cols=7 Identities=29% Similarity=0.800 Sum_probs=3.6
Q ss_pred CCCCCcE
Q 001916 195 GVQTDWK 201 (996)
Q Consensus 195 ~~~~~W~ 201 (996)
-.+.+|-
T Consensus 368 g~s~g~P 374 (389)
T KOG2932|consen 368 GQSFGWP 374 (389)
T ss_pred CCCCCCC
Confidence 3355665
No 122
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.16 E-value=1.1e+03 Score=32.04 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh-cc----CChHHHHHHHHHHHHHHHH
Q 001916 496 YLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK-AL----ERERDRKDMFDDHLDELKQ 570 (996)
Q Consensus 496 Yl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfk-Av----~~e~ERe~lFeeYi~~Lkk 570 (996)
||.++++-+-..++=++-.....|..-|.....+. .+-|.++..+|++.+-|. ++ .+..-++.+++-|-+.|..
T Consensus 873 ~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~ 951 (1265)
T KOG1920|consen 873 FLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLRE 951 (1265)
T ss_pred HHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455556666666443343 678999999999999887 32 2345778899999988876
Q ss_pred HH
Q 001916 571 KE 572 (996)
Q Consensus 571 kE 572 (996)
..
T Consensus 952 ~~ 953 (1265)
T KOG1920|consen 952 EL 953 (1265)
T ss_pred hc
Confidence 53
No 123
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=40.67 E-value=84 Score=33.91 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.4
Q ss_pred CCCcccc
Q 001916 114 AASYTFA 120 (996)
Q Consensus 114 ~~~~~~~ 120 (996)
++|+||.
T Consensus 194 gsSFTfG 200 (205)
T PF12238_consen 194 GSSFTFG 200 (205)
T ss_pred CCceecC
Confidence 3455553
No 124
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=40.00 E-value=24 Score=42.02 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.||..+...+|-+.||+..|+..||.+|=.|
T Consensus 154 pLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 154 PLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred cCCCceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 5899999999999999999999999999999665
No 125
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=39.66 E-value=3.2e+02 Score=31.57 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=6.3
Q ss_pred CCCCCCcccccc
Q 001916 167 TPVQPTDEQMAA 178 (996)
Q Consensus 167 ~~~~~~~~~~~~ 178 (996)
..+.|...|++.
T Consensus 158 aiv~P~~kqes~ 169 (421)
T KOG3248|consen 158 AIVTPPVKQESD 169 (421)
T ss_pred cccCCcccCccc
Confidence 344556666633
No 126
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=39.35 E-value=1.2e+02 Score=37.24 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=3.3
Q ss_pred CCCCCCc
Q 001916 27 PPRGQGG 33 (996)
Q Consensus 27 ~~~~~~~ 33 (996)
+++|++.
T Consensus 197 ~~~gq~q 203 (742)
T KOG4274|consen 197 QAVGQQQ 203 (742)
T ss_pred Ccccccc
Confidence 4455543
No 127
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.26 E-value=9.2e+02 Score=30.70 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCCChHHHHHHH---HHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhc---CCCCCCChhhHHHH-HHHHH
Q 001916 701 SGSTPKDLFEDV---VEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLED---ATSPPISDVNLKLI-FDDLL 773 (996)
Q Consensus 701 ~gStpldLF~D~---VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~~~l~ed---~r~~~l~~~nlk~i-Fe~li 773 (996)
...+.++++..+ ++.|.+++.+.++.|.+++.. .+.+...|.+- ..+-.+|..++-+. .++|.
T Consensus 97 ~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q----------ie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr 166 (660)
T KOG4302|consen 97 IEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ----------IEKLCEELGGPEDLPSFLIADESDLSLEKLEELR 166 (660)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCccCCcccccCcccccHHHHHHHH
Confidence 445777777766 556667777777777776532 12333333322 23334444444433 25666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-C--CCCCCCCHHHHHHHhcC
Q 001916 774 IKVKEKEEKEAKKRKRLEDEFFDLLCSV-K--EISATSTWENCRQLLEG 819 (996)
Q Consensus 774 ~r~kEKeeke~rk~rR~~~~F~~lLk~~-k--~I~~~stWee~k~~i~~ 819 (996)
.++.+=++ +...|.+....|+.-|+.+ . .+....+=.+|-+.+.+
T Consensus 167 ~~L~~L~~-ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~ 214 (660)
T KOG4302|consen 167 EHLNELQK-EKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVD 214 (660)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhh
Confidence 65543221 2222223345566655542 2 45666556677776654
No 128
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=37.69 E-value=2.3e+02 Score=37.86 Aligned_cols=10 Identities=20% Similarity=1.046 Sum_probs=4.4
Q ss_pred CCCcHHHHHH
Q 001916 463 SDWTWDQALR 472 (996)
Q Consensus 463 s~~tWeka~~ 472 (996)
+.|.|-.+++
T Consensus 868 p~W~~~~l~~ 877 (1639)
T KOG0905|consen 868 PSWDWGNLMD 877 (1639)
T ss_pred CCCchhhHHH
Confidence 3444444443
No 129
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=37.62 E-value=8.2e+02 Score=30.20 Aligned_cols=45 Identities=4% Similarity=-0.138 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHH
Q 001916 516 RDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFD 562 (996)
Q Consensus 516 re~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFe 562 (996)
+..|+ |+++...+-....|-+-.+.+..+.++.+... .+++.+|+
T Consensus 492 ~~~r~-~~~~~e~s~~r~~~~~kskr~~~~~~~~s~~~-~~~e~~~~ 536 (538)
T KOG1049|consen 492 REHRR-WDENEESSSGRREDHSKSKRSGTHLEEYSSRS-SFDESQRN 536 (538)
T ss_pred chhhh-hhhccccccccchhcchhhhccccchhhccCC-Cccccccc
Confidence 44444 55554445556677777777777777776542 24554443
No 130
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=37.32 E-value=14 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.736 Sum_probs=27.3
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
..-|+..++++--.||.|+.|..++|++|.
T Consensus 351 q~pw~rais~nkvpyyinh~~q~t~wdhp~ 380 (966)
T KOG4286|consen 351 QGPWERAISPNKVPYYINHETQTTCWDHPK 380 (966)
T ss_pred cccchhccCccccchhhcccchhhhccchH
Confidence 334999999999999999999999999995
No 131
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=35.32 E-value=13 Score=45.86 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 001916 556 DRKDMFDDHLDEL 568 (996)
Q Consensus 556 ERe~lFeeYi~~L 568 (996)
.+..-|++|+...
T Consensus 463 aKQ~RyeeFl~~k 475 (883)
T KOG2138|consen 463 AKQKRYEEFLVHK 475 (883)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455554444
No 132
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=34.42 E-value=2.4e+02 Score=32.54 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=8.5
Q ss_pred cccccCCCCCCCCCCCCCC
Q 001916 2 AEMANNAPYSGAQVPHQPP 20 (996)
Q Consensus 2 ~~~~~~~~~~g~~~p~~~~ 20 (996)
|-|+|. --||-.+|.-+|
T Consensus 336 AKMs~~-g~PG~a~Pa~~~ 353 (561)
T KOG1103|consen 336 AKMSID-GKPGNALPALPP 353 (561)
T ss_pred hhhccc-CCCCCCCCCCCc
Confidence 445543 245555554443
No 133
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=34.39 E-value=3.3e+02 Score=34.63 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.8
Q ss_pred CCCcEEEE
Q 001916 197 QTDWKEHT 204 (996)
Q Consensus 197 ~~~W~e~~ 204 (996)
+++|-..+
T Consensus 1083 pSGWw~gk 1090 (1106)
T KOG0162|consen 1083 PSGWWLGK 1090 (1106)
T ss_pred CCcchhhc
Confidence 44554444
No 134
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=33.86 E-value=7.8e+02 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHhhhcC---CCCCCCCHHHHHHHhcCcccccccCChhHHHHHHHHHHHHHH
Q 001916 792 DEFFDLLCSVK---EISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLK 844 (996)
Q Consensus 792 ~~F~~lLk~~k---~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~~F~efi~~Lk 844 (996)
..++.||+.++ .|+.. +|-++.-...+ -.|+.+ ....+||..++
T Consensus 100 RaLRRlLKklRd~gKIDkh-~YR~LYrKAKG-n~FKNK-------~~L~e~I~k~K 146 (357)
T PTZ00436 100 RILRRLLRKYREEKKIDRH-IYRELYVKAKG-NVFRNK-------RNLMEHIHKVK 146 (357)
T ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHHHhcC-CccCcH-------HHHHHHHHHHH
Confidence 34555555543 45533 34333333332 245443 34466777655
No 135
>KOG3661 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.81 E-value=66 Score=39.92 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC
Q 001916 446 LEAKNAFKALLESANVGSDW 465 (996)
Q Consensus 446 eEAk~aFk~ML~e~~V~s~~ 465 (996)
-++.++...|++=.=|+.+.
T Consensus 496 ~~t~ealenl~klR~VdYrY 515 (1019)
T KOG3661|consen 496 VDTTEALENLSKLRLVDYRY 515 (1019)
T ss_pred hhHHHHHHHhhhheeeeeee
Confidence 35677777777755444433
No 136
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=33.47 E-value=3.3e+02 Score=32.88 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 001916 20 PMVGSMDPPRGQ 31 (996)
Q Consensus 20 ~~~~~~~~~~~~ 31 (996)
.|++...|..|.
T Consensus 124 ~p~~e~LpS~~~ 135 (605)
T KOG4217|consen 124 GPVDERLPSSGN 135 (605)
T ss_pred CcccccCCcccc
Confidence 455667777664
No 137
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=33.40 E-value=42 Score=38.52 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=37.9
Q ss_pred cCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001916 205 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 205 ~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 266 (996)
+.+|++|.+|..|++..|..+.......--.....+---..+.+|.+|.++..||+..|..+
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 55688888888888888876321100000000112222233578999999999999999854
No 138
>PHA03377 EBNA-3C; Provisional
Probab=32.41 E-value=3.9e+02 Score=33.91 Aligned_cols=134 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCccCCCCCCCCC
Q 001916 8 APYSGAQVPHQP--PMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPA-RPGPPAPSHVPPPPQVMSLPNAQPSN 84 (996)
Q Consensus 8 ~~~~g~~~p~~~--~~~~~~~~~~~~~~~~~~~g~p~q~~~~~~~~q~~p~~~-~p~~~~~~~~~~~~q~~~~~~~~~~~ 84 (996)
+||+|..-|..+ +-.+...||..+--.+.+.-. +|.+|.|.++-.+-.++ ++.+.+=++.+.+++|.+.--.|+--
T Consensus 814 ~QyP~ygH~~~pW~~~p~h~~p~Wdp~a~h~~~qw-s~~~h~Q~~~~Pp~~~~t~~pqL~y~q~~~s~~a~~~ss~~~~a 892 (1000)
T PHA03377 814 SQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQV-SQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPSWSSPQPRA 892 (1000)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc-ccCccccccCCCCchhhcccccccccCCccccccccccCCCCCC
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccccCCCCCCCcc
Q 001916 85 HIP--PSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQM 144 (996)
Q Consensus 85 ~~~--~~~~p~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 144 (996)
||- +.-.|+|+.+--+|.--|.-..|.+. +|..|+ |-|.|-+-+.....+.-+-.|+.
T Consensus 893 p~rpiptr~p~p~~plqdsm~~g~~~sgt~~-psm~fa-sdysqgaftpl~~~~~~pkrpr~ 952 (1000)
T PHA03377 893 PIRPIPTRFPPPPMPLQDSMAVGCDSSGTAC-PSMPFA-SDYSQGAFTPLDINAQTPKRPRV 952 (1000)
T ss_pred CcCCCCcCCCCCCCchhhhhhhcccCCCCcC-CCcccc-cccccccccccccCCCCCCCccc
No 139
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=36 Score=39.72 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
..+|..+.++.|.+||||++-+.++|-.|.+.
T Consensus 115 l~~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 115 LAGWHMRFTDTGQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ccceeeEecCCCceehhhhhhcCccccCchhh
Confidence 34899999999999999999999999988776
No 140
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=32.11 E-value=1.3e+02 Score=38.06 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=6.6
Q ss_pred cCCCcHHHHHH
Q 001916 598 KANTQWRKVQD 608 (996)
Q Consensus 598 t~~TtW~ev~~ 608 (996)
.++-+|+++..
T Consensus 658 eyYYtWKK~~~ 668 (907)
T KOG4167|consen 658 EYYYTWKKIMR 668 (907)
T ss_pred HHHHHHHHhcc
Confidence 45567776654
No 141
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.05 E-value=3.8e+02 Score=35.09 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=2.6
Q ss_pred CCCCccc
Q 001916 169 VQPTDEQ 175 (996)
Q Consensus 169 ~~~~~~~ 175 (996)
++.+|.+
T Consensus 1457 ~~~g~~k 1463 (1493)
T KOG2045|consen 1457 VQSGGEK 1463 (1493)
T ss_pred cccCCcC
Confidence 3333333
No 142
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=31.80 E-value=1.8e+02 Score=34.76 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHhhh-cCCCCCCCCHHHHHHH--------------hcCcccc
Q 001916 766 KLIFDDLLIKVKEKEEKEAKKRKRLED-EFF------DLLCS-VKEISATSTWENCRQL--------------LEGSQEF 823 (996)
Q Consensus 766 k~iFe~li~r~kEKeeke~rk~rR~~~-~F~------~lLk~-~k~I~~~stWee~k~~--------------i~~~~ey 823 (996)
+.-|+++++.++.++.++++++.++.+ .++ .+..- ...|-. .|++++.- +.+.-=+
T Consensus 235 rqeyeei~~qAkkre~k~~ker~k~~eer~r~ee~~~~~v~vW~~eILp--nWe~m~~SrR~relWwQGiP~~VRGkvW~ 312 (586)
T KOG2223|consen 235 RQEYEEIVKQAKKRERKEAKERKKMVEERNRLEERIAYAVNVWENEILP--NWEDMLKSRRVRELWWQGIPPSVRGKVWS 312 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--chHHHHhhHHHHHHHHccCChhhcchhhH
Confidence 456888888888777766655554433 332 11111 123432 48876642 3333446
Q ss_pred cccCCh-hHHHHHHHHHHHH
Q 001916 824 SSIGDE-SICRGVFDEFVTQ 842 (996)
Q Consensus 824 ~~L~~e-~~r~~~F~efi~~ 842 (996)
.+|+++ .+-.++|+-++.+
T Consensus 313 laIGNel~it~elfd~~la~ 332 (586)
T KOG2223|consen 313 LAIGNELNITYELFDIALAR 332 (586)
T ss_pred hhhCcccccCHHHHHHHHHH
Confidence 667765 5667888866653
No 143
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=31.74 E-value=49 Score=36.96 Aligned_cols=6 Identities=67% Similarity=1.182 Sum_probs=2.6
Q ss_pred CCCCCC
Q 001916 38 AGFPSQ 43 (996)
Q Consensus 38 ~g~p~q 43 (996)
.|||.|
T Consensus 277 ~gm~~q 282 (321)
T KOG0148|consen 277 AGMPGQ 282 (321)
T ss_pred ccccCC
Confidence 444444
No 144
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=31.70 E-value=1.2e+02 Score=34.92 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 001916 831 ICRGVFDEFVTQLK 844 (996)
Q Consensus 831 ~r~~~F~efi~~Lk 844 (996)
.|.++-+++.+..+
T Consensus 263 ~R~~~~~~~~K~~~ 276 (321)
T PF07946_consen 263 NREEEEEKILKEAH 276 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444454444433
No 145
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.83 E-value=3 Score=51.22 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHH
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
......|...+...|.+|||+.+-..|+|.-|.++ |+.|||+..|.+++|..|-.+.
T Consensus 651 ~~~~~~~k~~~k~~~ei~~~k~~~~~s~~~~p~e~--------------------~~~q~~~~~~~~~q~l~~~~~~ 707 (729)
T KOG4442|consen 651 QKTAEAIKAAVKRANEIEAKKEALAKSSYVPPSEL--------------------GETQYYKKITKETQYLDPTPVQ 707 (729)
T ss_pred ccChHHHHHHHhhhhHHHHHHHHHHHhccCCCchh--------------------hhhhHHHHhhhhhccccccccc
Confidence 34457788888889999999999999999887655 7889999999999999886654
No 146
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=30.82 E-value=26 Score=43.76 Aligned_cols=37 Identities=27% Similarity=0.558 Sum_probs=31.0
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHH
Q 001916 237 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR 273 (996)
Q Consensus 237 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~ 273 (996)
...+|...++.+--+||+|+.|..++|+.|.-.....
T Consensus 350 vq~pw~rais~nkvpyyinh~~q~t~wdhp~~tel~q 386 (966)
T KOG4286|consen 350 VQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQ 386 (966)
T ss_pred CcccchhccCccccchhhcccchhhhccchHHHHHHH
Confidence 3457999999988899999999999999997654443
No 147
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=30.33 E-value=6.5e+02 Score=28.63 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 001916 102 YPPGLGGLG 110 (996)
Q Consensus 102 ~~p~~~~~~ 110 (996)
+-||+|.+.
T Consensus 206 mg~~~~rp~ 214 (354)
T KOG4594|consen 206 MGPGGGRPW 214 (354)
T ss_pred cccccCCCC
Confidence 333444433
No 148
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=5.2e+02 Score=31.29 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred cHHHHHHHhhhhhh--hhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 602 QWRKVQDRLEADER--CSRL--DKMDRLEIFQEYLNDLEKEEEEQRKIQKEE 649 (996)
Q Consensus 602 tW~ev~~~L~~D~R--y~~L--~~~DrLelFed~I~~LekeeeE~k~~~k~~ 649 (996)
.|..|+..|-..+. .+.+ -..+..++|+++...+.+.+.+-++++++.
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~ 53 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDL 53 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666665543322 2233 345788999999999998888877777654
No 149
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.46 E-value=2.4e+02 Score=38.36 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 001916 766 KLIFDDLLI 774 (996)
Q Consensus 766 k~iFe~li~ 774 (996)
..+|++.++
T Consensus 1292 D~l~~~a~~ 1300 (1355)
T PRK10263 1292 DPLFDQAVQ 1300 (1355)
T ss_pred cHHHHHHHH
Confidence 334444444
No 150
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=28.44 E-value=4.6e+02 Score=34.45 Aligned_cols=12 Identities=8% Similarity=-0.155 Sum_probs=5.4
Q ss_pred EEEEcCCCCcee
Q 001916 201 KEHTSADGRRYY 212 (996)
Q Consensus 201 ~e~~~~~Gr~YY 212 (996)
++++-+--++||
T Consensus 1262 ~ey~~~ppk~~~ 1273 (1629)
T KOG1892|consen 1262 EEYRIPPPKVPT 1273 (1629)
T ss_pred cceecCCCCcce
Confidence 344444445555
No 151
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=28.40 E-value=53 Score=23.82 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.8
Q ss_pred ECCCCCeEEEeCCCCeeeccCC
Q 001916 245 TSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 245 ~~~~Gr~YyyN~~T~es~We~P 266 (996)
.+.+|..|-+|..||+..|..+
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 3468999999999999999853
No 152
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.26 E-value=7.9e+02 Score=26.60 Aligned_cols=57 Identities=26% Similarity=0.375 Sum_probs=41.7
Q ss_pred CCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 001916 701 SGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVK 777 (996)
Q Consensus 701 ~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~~~l~ed~r~~~l~~~nlk~iFe~li~r~k 777 (996)
-|-...|+.-|-|++...-..+.+..|..+| +.|..++ +++..+|...|+.|.....
T Consensus 18 vG~hKRdilvdrVe~Ardsq~eaqeQF~sAL-------------e~f~sl~-------~~~ggdLe~~Y~~ln~~ye 74 (201)
T PF11172_consen 18 VGVHKRDILVDRVEDARDSQQEAQEQFKSAL-------------EQFKSLV-------NFDGGDLEDKYNALNDEYE 74 (201)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhh-------CCCCCcHHHHHHHHHHHHH
Confidence 4677889989999988777777777776655 5666666 4456788888988876553
No 153
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=28.06 E-value=4.2e+02 Score=33.81 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 001916 103 PPGLGGLGRP 112 (996)
Q Consensus 103 ~p~~~~~~~~ 112 (996)
+|.+|.+|+.
T Consensus 1015 ~~~~~~~~~~ 1024 (1106)
T KOG0162|consen 1015 VPDAGASGNG 1024 (1106)
T ss_pred cCcccCcccc
Confidence 5555555554
No 154
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=1.6e+02 Score=34.82 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 829 ESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKERE 866 (996)
Q Consensus 829 e~~r~~~F~efi~~Lkek~~e~er~r~~e~~~~~~~~e 866 (996)
+..|.+.-++|.+.+++..-|....|.+|+++.+|++=
T Consensus 369 ~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl 406 (440)
T KOG2357|consen 369 DKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKL 406 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888887777776665555554444443
No 155
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=27.60 E-value=46 Score=39.84 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=36.1
Q ss_pred CCCCCCCCcEEEEcCCCCceeeccCccccccCCCCccchhh
Q 001916 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI 232 (996)
Q Consensus 192 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~ 232 (996)
.+.+.+.+|....-..|-.-||++.|+..+|.+|.-+.+..
T Consensus 151 ~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGtGs 191 (650)
T KOG4334|consen 151 KSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGTGS 191 (650)
T ss_pred CCCcCCCceEEEeecCCCceEEeeeeeeEeccCceeecccc
Confidence 55677899999999999999999999999999998886543
No 156
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.60 E-value=8.5e+02 Score=26.72 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=12.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHH
Q 001916 619 LDKMDRLEIFQEYLNDLEKEEE 640 (996)
Q Consensus 619 L~~~DrLelFed~I~~Lekeee 640 (996)
....+++..+.+-|..|++...
T Consensus 30 ~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665443
No 157
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=27.42 E-value=1.4e+02 Score=37.90 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=3.9
Q ss_pred hhhhhhh
Q 001916 963 ESRHKRH 969 (996)
Q Consensus 963 ~~~~~~~ 969 (996)
-.|++||
T Consensus 449 ~t~~~~~ 455 (1064)
T KOG1144|consen 449 ATRTKRA 455 (1064)
T ss_pred hhhhhhc
Confidence 4555665
No 158
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=27.39 E-value=68 Score=37.34 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=34.4
Q ss_pred cCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccC
Q 001916 205 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 265 (996)
Q Consensus 205 ~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 265 (996)
+.+|++|-+|..|++..|..+.......-......+---+.+.+|.+|.+|..||+..|..
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 4456666666666666665443110000000011233334557899999999999999974
No 159
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=27.14 E-value=3.8e+02 Score=28.70 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=8.3
Q ss_pred CCCCChHHHHHHH
Q 001916 700 TSGSTPKDLFEDV 712 (996)
Q Consensus 700 ~~gStpldLF~D~ 712 (996)
.+|-.|..||--.
T Consensus 83 ~SgV~p~~lfpS~ 95 (225)
T KOG4848|consen 83 KSGVPPEELFPSA 95 (225)
T ss_pred ccCCChhhhCCCH
Confidence 4677777777543
No 160
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=27.09 E-value=1.2e+03 Score=28.48 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=8.5
Q ss_pred CccccccCCCCcc
Q 001916 216 RTRVSTWDKPFEL 228 (996)
Q Consensus 216 ~T~~s~WekP~~l 228 (996)
.|+.++|-.|-..
T Consensus 321 ltgt~~~pr~g~a 333 (632)
T KOG3910|consen 321 LTGTSQWPRPGGA 333 (632)
T ss_pred cccccCCCCCCcc
Confidence 4566788777544
No 161
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=25.54 E-value=43 Score=35.19 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=42.0
Q ss_pred cCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccC
Q 001916 205 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSL 265 (996)
Q Consensus 205 ~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~ 265 (996)
+.+|.+|-||..|++..|........... .....+---+.+.+|.+|.+|..||+..|..
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeeccccccce-eeecccccccccceeeeEecccCCcceeeee
Confidence 57899999999999999976542211100 1222333344557889999999999999994
No 162
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=25.53 E-value=88 Score=36.41 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=45.5
Q ss_pred cEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 200 W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
..-..+.+|.+|-+|..|++..|..+...... .......+---+.+.+|.+|-+|..||+..|..+.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 33344567999999999999999886432110 00011123333345789999999999999999864
No 163
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=25.44 E-value=4.9e+02 Score=31.17 Aligned_cols=127 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCccC
Q 001916 3 EMANNAPYSGAQVPHQPPMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGP------PAPSHVPPPPQVMS 76 (996)
Q Consensus 3 ~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~g~p~q~~~~~~~~q~~p~~~~p~~------~~~~~~~~~~q~~~ 76 (996)
.+-+++++. .+|..+.+-.+.++-|-+.......+.++.+.....+++.+|......+ ++.+.++||.....
T Consensus 104 ~~~p~~~~q--~~~~~n~~s~~e~~~~~~~~~~~~q~~~se~~~~~~~~~~~p~~pp~~~~~a~~~~~~~~~ppp~p~~~ 181 (409)
T KOG4590|consen 104 TPEPPPQPQ--PWPVTNGPSQSEDPVQTRLTRMSSQPGPSESIRPSPSSGSPPPSPPSANGVAPPGPHYDPGPPPIPPAG 181 (409)
T ss_pred CCCCCCcCC--CCCCCCCCCcccccchhhhhhhhcccccccccccCCCCCCCCCCCcccCCCCCCCcccCCCCCCccccC
Q ss_pred CCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCcc-cccCCCCCCcccc
Q 001916 77 LPNAQPSNHIPPSSLPRPNV-------QALSSYPPGLGGLGRPVAASYT-FAPSSYGQPQLIG 131 (996)
Q Consensus 77 ~~~~~~~~~~~~~~~p~~~~-------~~p~~~~p~~~~~~~~~~~~~~-~~~~s~~~~~~~~ 131 (996)
.+...+..|++++..|.+.+ ..+..+.+|.-.+......-+. -+..++|+.+...
T Consensus 182 ~~p~~p~~~~a~~~~p~~~~~~~~~~~~~~~a~~~g~~a~~a~~~~~~~~~~~~~~~~~~~~~ 244 (409)
T KOG4590|consen 182 PPPPPPGEHGAPPDPPPPPPLGGARQKQSKQATANGSHAAQAGKIKLKVDDADEASGQFTSSG 244 (409)
T ss_pred CCCCCcccccCCCCCCcccccccccccccccccCCccccccccCCCccccccccccccccCCC
No 164
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=25.18 E-value=46 Score=37.96 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=8.8
Q ss_pred cccHHHHHHHHHHH
Q 001916 621 KMDRLEIFQEYLND 634 (996)
Q Consensus 621 ~~DrLelFed~I~~ 634 (996)
..|.-++|+.||++
T Consensus 171 p~dLw~WyEpyldD 184 (453)
T KOG2888|consen 171 PADLWDWYEPYLDD 184 (453)
T ss_pred hhHHHHHhhhhccc
Confidence 34566677777754
No 165
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.14 E-value=4.2e+02 Score=33.87 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHh--CCCCCCCcHHHH
Q 001916 448 AKNAFKALLES--ANVGSDWTWDQA 470 (996)
Q Consensus 448 Ak~aFk~ML~e--~~V~s~~tWeka 470 (996)
|+..+-.|+.- ..|+....|++-
T Consensus 425 aKaiYSkLFD~lV~~iNqsiPFe~S 449 (1259)
T KOG0163|consen 425 AKAIYSKLFDWLVGRINQSIPFEKS 449 (1259)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc
Confidence 44445555432 235555555543
No 166
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=24.85 E-value=80 Score=33.18 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=41.0
Q ss_pred EEEEcC-CCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeecc
Q 001916 201 KEHTSA-DGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWS 264 (996)
Q Consensus 201 ~e~~~~-~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We 264 (996)
.-+... +|+++=+|..|++..|+.+... ..-......+---+.+.+|.+|-++..||+..|.
T Consensus 175 ~v~~~~~~g~~~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 175 RVYVSSGDGRVVAVDLATGEKLWSKPISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEECCTSSEEEEETTTTEEEEEECSS---ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEecCCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 455544 5777777889998889777222 1111123334444445689999999999999995
No 167
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=24.54 E-value=2.3e+02 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhc
Q 001916 580 RKRNIIEYRKFLESC 594 (996)
Q Consensus 580 rkra~~ef~~lL~~~ 594 (996)
.++++..|+.||+.+
T Consensus 4 ~k~nL~af~~yi~kt 18 (89)
T cd08816 4 EKRNLQRFRDYIKKI 18 (89)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467888999998864
No 168
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=24.15 E-value=96 Score=36.74 Aligned_cols=6 Identities=67% Similarity=0.811 Sum_probs=2.5
Q ss_pred ccccCC
Q 001916 118 TFAPSS 123 (996)
Q Consensus 118 ~~~~~s 123 (996)
+|+|++
T Consensus 409 ~~ap~s 414 (483)
T KOG2546|consen 409 PVAPSS 414 (483)
T ss_pred CCCCCC
Confidence 344443
No 169
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=23.97 E-value=83 Score=36.12 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=45.3
Q ss_pred cEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001916 200 WKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 200 W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 266 (996)
.--..+.+|.+|-+|..|++-.|......... -......+.--+.+.+|.+|-+|..||+..|+.+
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAKLSSEVL-SPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeeccCceee-cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 33344668999999999999999876422100 0011123444445578999999999999999965
No 170
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=23.76 E-value=2.9e+02 Score=36.83 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=4.7
Q ss_pred cCCCCcee
Q 001916 205 SADGRRYY 212 (996)
Q Consensus 205 ~~~Gr~YY 212 (996)
.|.||-||
T Consensus 1860 sPr~r~~r 1867 (1906)
T KOG4822|consen 1860 SPRARQYR 1867 (1906)
T ss_pred Cchhhhhc
Confidence 45566666
No 171
>smart00818 Amelogenin Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions w
Probab=22.79 E-value=7.5e+02 Score=25.89 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.4
Q ss_pred CCcccc
Q 001916 141 MSQMHV 146 (996)
Q Consensus 141 ~~~~~~ 146 (996)
++.+..
T Consensus 141 lPPllP 146 (165)
T smart00818 141 LPPLLP 146 (165)
T ss_pred CCCCCC
Confidence 334443
No 172
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=22.60 E-value=3e+02 Score=33.00 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred ccccccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001916 478 RRYGALRTL---GERKTAFNEYLGQKKKQDAEERRLKLKKARDDY 519 (996)
Q Consensus 478 pRY~al~t~---~ERKqlFeeYl~~r~keEkeekr~k~kkare~F 519 (996)
|-+.--+.. ..-+|.|++-+.+.++.|+.+++.+.+...+.+
T Consensus 220 PS~LPaKsaeEa~kHrqeyeei~~qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 220 PSNLPAKSAEEAKKHRQEYEEIVKQAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433332 345789999999999888887776665555554
No 173
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.40 E-value=86 Score=37.94 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCCCceeeccCccccccCCCCccc-------hhh--hccCCCCCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001916 206 ADGRRYYFNKRTRVSTWDKPFELM-------TTI--ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 206 ~~Gr~YYyN~~T~~s~WekP~~l~-------~~~--e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 266 (996)
.+|++|-+|..|++..|..+.... .+. -......+---+-+.+|.+|-+|..||+..|..+
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 468999999999999999876510 000 0001122332233679999999999999999953
No 174
>KOG3583 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=73 Score=34.42 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=0.0
Q ss_pred cccCCCC----CCCCCC-----CCCCCCCCCCCCCCCCccccCCCCC----------CCCCCCCCCCCCCCCCCCCCCCC
Q 001916 4 MANNAPY----SGAQVP-----HQPPMVGSMDPPRGQGGLIMNAGFP----------SQPLQPPFRPLMHPLPARPGPPA 64 (996)
Q Consensus 4 ~~~~~~~----~g~~~p-----~~~~~~~~~~~~~~~~~~~~~~g~p----------~q~~~~~~~~q~~p~~~~p~~~~ 64 (996)
|+|-++- +|+.++ .++-.+.+..-.-||--+.+..||| ++.+||+|+ +..|+.|.+..
T Consensus 197 ~~~~gPg~a~~pga~s~~gpS~~qpi~m~qP~~sg~q~~Qql~~g~Ps~~ktniksas~hq~P~~s---~~~~~~~~~~~ 273 (279)
T KOG3583|consen 197 MAPAGPGSAPMPGAPSSTGPSSSQPISMNQPEYSGSQLRQQLSGGQPSTSKTNIKSASHHQQPQYS---HQQPMNPQHHS 273 (279)
T ss_pred cCCCCCCCCCCCCCCCCCCCcccCCCCCCCCccChHHHHHhccCCCCchhhhcccchhhccCcccc---ccCCCCccccc
Q ss_pred C
Q 001916 65 P 65 (996)
Q Consensus 65 ~ 65 (996)
|
T Consensus 274 ~ 274 (279)
T KOG3583|consen 274 P 274 (279)
T ss_pred c
No 175
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=21.94 E-value=1.3e+03 Score=26.75 Aligned_cols=210 Identities=13% Similarity=0.252 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHhcCccccCCChHHHHHHh---h
Q 001916 623 DRLEIFQEYLNDLEKEEEEQRKIQKE-----------ELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKV---K 688 (996)
Q Consensus 623 DrLelFed~I~~LekeeeE~k~~~k~-----------~~rR~eRK~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~I---k 688 (996)
...+++.+....|..++.+..+.... ..-...|..-..|+.+|+.-.. +.-....+|.+..+.| .
T Consensus 87 ~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~-sD~~v~~k~~~~~~~l~lLs 165 (339)
T cd09235 87 RNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQ-ADKIVREKYESHREGIELLS 165 (339)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHc
Confidence 45567777777777665544332211 0111223344667777766432 3333344555554422 2
Q ss_pred CChhhhhhhcCCCCCC---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHHHHHhhcCCC--
Q 001916 689 DSPPYMAVASNTSGST---------PKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATS-- 757 (996)
Q Consensus 689 dd~rf~~l~~g~~gSt---------pldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~~~l~ed~r~-- 757 (996)
...+ +|..-.|.++ ...-...+++++. ....+|..+...|+.....|+ ..|...+..+..+
T Consensus 166 ~~~~--~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~-~lk~eR~~~~~~Lk~~~dDI~-----~~ll~~~~~~~~~~~ 237 (339)
T cd09235 166 KPEE--ELANAIPSASPAKTLQGSEAVQELRQLMEQVE-TIKAEREVIESELKSATFDMK-----SKFLSALAQDGAINE 237 (339)
T ss_pred CCHH--HHHHhCCCCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccH-----HHHHHHHHhcCCccH
Confidence 2211 1100011111 2333345555554 334445555555554422111 2333333333322
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHhcC-cccccccCCh-hHHHHH
Q 001916 758 PPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEG-SQEFSSIGDE-SICRGV 835 (996)
Q Consensus 758 ~~l~~~nlk~iFe~li~r~kEKeeke~rk~rR~~~~F~~lLk~~k~I~~~stWee~k~~i~~-~~ey~~L~~e-~~r~~~ 835 (996)
..|....|+..|+.++.++.+-..++..-...+...+..++.....-.....|+.+...|.. .-.|..|..- ..-...
T Consensus 238 e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kF 317 (339)
T cd09235 238 EAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKF 317 (339)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555566667888777765443333333334444444443322222223356766666653 3344444321 222334
Q ss_pred HHHHHH
Q 001916 836 FDEFVT 841 (996)
Q Consensus 836 F~efi~ 841 (996)
|+++..
T Consensus 318 Y~dL~~ 323 (339)
T cd09235 318 YNDLTE 323 (339)
T ss_pred HHHHHH
Confidence 454444
No 176
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=21.53 E-value=1.2e+02 Score=36.64 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=11.0
Q ss_pred ccccCCCCCCCCCCCCCCC
Q 001916 3 EMANNAPYSGAQVPHQPPM 21 (996)
Q Consensus 3 ~~~~~~~~~g~~~p~~~~~ 21 (996)
.|-|-.|+-|.- |.+-|.
T Consensus 187 ~~~~~~~~~~~~-~~~~P~ 204 (817)
T KOG1925|consen 187 AMPNEAGGDADS-PETAPA 204 (817)
T ss_pred cCcccccCCCCC-cccChH
Confidence 366777777765 555443
No 177
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=21.45 E-value=1.2e+03 Score=30.59 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=6.2
Q ss_pred HhcCccccccC
Q 001916 474 IINDRRYGALR 484 (996)
Q Consensus 474 ii~DpRY~al~ 484 (996)
+..||.|..+.
T Consensus 1029 v~qdPiw~~~~ 1039 (1114)
T KOG3753|consen 1029 VLQDPIWLLMA 1039 (1114)
T ss_pred cccCchhhhcc
Confidence 44566666554
No 178
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=20.76 E-value=1.5e+03 Score=27.12 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 001916 88 PSSLPRPNV 96 (996)
Q Consensus 88 ~~~~p~~~~ 96 (996)
.++.|+|++
T Consensus 373 i~~v~~qy~ 381 (531)
T KOG1960|consen 373 IASVHQQYK 381 (531)
T ss_pred CCcccccCc
Confidence 344455443
No 179
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=20.73 E-value=1.3e+03 Score=30.43 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhCCC
Q 001916 445 KLEAKNAFKALLESANV 461 (996)
Q Consensus 445 keEAk~aFk~ML~e~~V 461 (996)
..+|..-|..-|.-.+.
T Consensus 509 ~~qa~~~~~t~l~~~~~ 525 (953)
T KOG2588|consen 509 FAQAAAKLYTCLAMLGR 525 (953)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34566666666655543
No 180
>PF06484 Ten_N: Teneurin Intracellular Region; InterPro: IPR009471 Teneurins are a family of phylogenetically conserved transmembrane glycoproteins expressed during pattern formation and morphogenesis []. Originally discovered as ten-m and ten-a in Drosophila melanogaster, the teneurin family is conserved from Caenorhabditis elegans (ten-1) to vertebrates, in which four paralogs exist (teneurin-1 to -4 or odz-1 to -4). Their distinct domain architecture is highly conserved between invertebrate and vertebrate teneurins, particularly in the extracellular part. The intracellular domains of Ten-a, Ten-m/Odz and C. elegans Ten-1 are significantly different, both in size and structure, from the comparable domains of vertebrate teneurins, but the extracellular domains of all of these proteins are remarkably similar. The large C-terminal extracellular domain consists of eight EGF-like repeats (see PDOC00021 from PROSITEDOC), a region of conserved cysteines and unique YD-repeats. The N-terminal intracellular domain of vertebrate teneurins contains two EF-hand-like calcium-binding motifs and two polyproline regions involved in protein-protein interactions, followed by a single-span transmembrane domain. The intracellular domain is linked to the cytoskeleton through its interaction with the adaptor protein CAP/ponsin and can be cleaved near (or possibly in) the transmembrane domain and transported to the nucleus [, ], giving teneurins the potential to act as transcription factors [, ]. There is considerable divergence between intracellular domains of invertebrate and vertebrate teneurins as well as between different invertebrate proteins [, , , , ]. This domain is found in the intracellular N-terminal region of the Teneurin family.; GO: 0007165 signal transduction, 0016021 integral to membrane
Probab=20.67 E-value=9.2e+02 Score=28.15 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q 001916 97 QALSSYPP 104 (996)
Q Consensus 97 ~~p~~~~p 104 (996)
|.|++|+.
T Consensus 209 ~~p~~~l~ 216 (370)
T PF06484_consen 209 FSPNSFLV 216 (370)
T ss_pred cCcceeee
Confidence 66666643
No 181
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=20.59 E-value=2.8e+02 Score=37.15 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=17.3
Q ss_pred CCCCCChHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccccc
Q 001916 699 NTSGSTPKDLFEDVVEELQKQ-FQEDKTRIKDAVKLRKITL 738 (996)
Q Consensus 699 g~~gStpldLF~D~VeeL~k~-~~e~K~~ikd~lk~~~i~v 738 (996)
|+=|---..-|+|+---|.+. +..--+.|+|+....+|.+
T Consensus 1931 GRLGRiGHGElkdWs~LL~k~sLq~~Sk~LKDiCrmCgiSa 1971 (2238)
T KOG3600|consen 1931 GRLGRIGHGELKDWSHLLNKTSLQRYSKSLKDICRMCGISA 1971 (2238)
T ss_pred eeccccccchhhHHHHHhchhhHHHHHHHHHHHHHhcCCcc
Confidence 333333344555554444322 2222234566555444433
No 182
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=20.52 E-value=2.2e+03 Score=29.03 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=62.8
Q ss_pred CCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHH-H-
Q 001916 461 VGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSK-A- 538 (996)
Q Consensus 461 V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~-a- 538 (996)
+-..|..+.+++.|-+|=-|.+..+ +--++|+.||... .|...++|.+ +
T Consensus 379 ~~~NW~~e~vl~llKt~~~f~~~~~--~~iD~lEnYvl~~---------------------------GI~G~~kw~k~f~ 429 (1108)
T COG3857 379 KRYNWRYEPVLNLLKTDVLFDSNES--EDIDLLENYVLAA---------------------------GIKGKKKWTKLFT 429 (1108)
T ss_pred HHhccchhHHHHHHHhcccccccch--HHHHHHHHHHHHh---------------------------ccccchhhhhHhh
Confidence 5667888888888887766655443 7788999999763 4777788877 2
Q ss_pred HHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001916 539 VTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCD 595 (996)
Q Consensus 539 ~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~~ 595 (996)
...|.+ +....-..+++.+++.-|..=++-..++.-..-.++|..+|+...
T Consensus 430 ~~~~~~------~~~~~~lne~r~~il~pL~~l~~~sr~kt~~~~~~al~~~Le~~~ 480 (1108)
T COG3857 430 YEHFRK------IENLERLNETRLDILHPLETLLKMSRAKTVKELAQALYEFLEEGR 480 (1108)
T ss_pred HHHhhc------hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233333 323334556777777777665442222333445566777777654
No 183
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=20.31 E-value=1.8e+03 Score=27.98 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 001916 745 EDFKASV 751 (996)
Q Consensus 745 eef~~~l 751 (996)
+++..+|
T Consensus 527 d~I~~~V 533 (617)
T PRK14086 527 AAIMAAT 533 (617)
T ss_pred HHHHHHH
Confidence 3444444
No 184
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=18 Score=44.17 Aligned_cols=33 Identities=27% Similarity=0.097 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCccccCCCC
Q 001916 8 APYSGAQVPHQPPMVGSMDPP-RGQGGLIMNAGF 40 (996)
Q Consensus 8 ~~~~g~~~p~~~~~~~~~~~~-~~~~~~~~~~g~ 40 (996)
-..||++|-.|--+.|.-+-. |||+|-+-|+|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (1179)
T KOG3648|consen 28 EKLPGHGVHSQGQGPGANFVSFVGQAGGGGPAGQ 61 (1179)
T ss_pred ccCCCCccccCCCCCCcchhhhccccCCCCchhh
Confidence 456788765553333333322 677666666663
No 185
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.02 E-value=2.3e+02 Score=34.37 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001916 661 FRKLMEA 667 (996)
Q Consensus 661 Fk~LL~e 667 (996)
|..|++.
T Consensus 548 f~qL~DN 554 (817)
T KOG1925|consen 548 FEQLTDN 554 (817)
T ss_pred HHHHHHH
Confidence 3333333
Done!