Query 001916
Match_columns 996
No_of_seqs 344 out of 1109
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 1.1E-39 3.9E-44 338.1 11.5 186 444-632 3-189 (190)
2 3hfh_A Transcription elongatio 99.9 2.5E-26 8.6E-31 238.1 11.9 184 514-714 6-190 (190)
3 2l5f_A PRE-mRNA-processing fac 99.8 5.7E-20 1.9E-24 168.9 7.8 79 194-272 10-88 (92)
4 2jxw_A WW domain-binding prote 99.8 5.1E-20 1.8E-24 162.9 6.5 73 196-268 3-75 (75)
5 1uzc_A Hypothetical protein FL 99.7 9.6E-19 3.3E-23 152.5 6.1 64 438-501 7-70 (71)
6 2dod_A Transcription elongatio 99.7 2.2E-18 7.6E-23 154.2 6.2 68 441-509 12-79 (82)
7 1o6w_A PRP40, PRE-mRNA process 99.7 1.4E-18 4.7E-23 153.7 4.1 71 198-268 2-72 (75)
8 2b7e_A PRE-mRNA processing pro 99.7 3E-18 1E-22 142.6 4.5 56 445-500 2-59 (59)
9 2kxq_A E3 ubiquitin-protein li 99.7 4.9E-17 1.7E-21 148.7 8.0 75 194-268 8-87 (90)
10 1tk7_A CG4244-PB; WW domain, n 99.7 8.9E-17 3E-21 146.5 7.0 74 194-267 11-87 (88)
11 2doe_A Transcription elongatio 99.3 1.5E-12 5.2E-17 117.1 6.5 62 443-504 14-75 (83)
12 2doe_A Transcription elongatio 99.3 6.2E-13 2.1E-17 119.6 1.0 70 502-572 6-75 (83)
13 2cqn_A Formin-binding protein 99.3 3.4E-12 1.1E-16 113.1 5.2 65 784-848 5-70 (77)
14 2juc_A PRE-mRNA-splicing facto 99.2 3.9E-12 1.3E-16 105.9 2.8 53 446-498 6-58 (59)
15 2dk7_A Transcription elongatio 99.1 2.2E-11 7.4E-16 105.1 1.4 52 198-249 20-73 (73)
16 2cqn_A Formin-binding protein 99.1 2.2E-10 7.4E-15 101.5 7.4 61 511-571 7-68 (77)
17 1e0l_A Formin binding protein; 99.0 2.4E-10 8.1E-15 87.3 3.8 35 195-229 3-37 (37)
18 2ysi_A Transcription elongatio 98.9 1.1E-09 3.6E-14 85.1 4.0 34 195-228 7-40 (40)
19 1uzc_A Hypothetical protein FL 98.9 4.6E-09 1.6E-13 91.5 7.7 55 513-568 15-69 (71)
20 1e0l_A Formin binding protein; 98.8 2.6E-09 8.8E-14 81.6 3.2 34 236-269 3-36 (37)
21 2dod_A Transcription elongatio 98.7 7.1E-09 2.4E-13 92.8 4.9 61 513-575 17-77 (82)
22 2dk1_A WW domain-binding prote 98.7 5.1E-09 1.8E-13 85.0 3.3 40 197-236 6-45 (50)
23 1ywi_A Formin-binding protein 98.7 4E-09 1.4E-13 82.4 2.1 33 195-227 9-41 (41)
24 1wr7_A NEDD4-2; all-beta, liga 98.7 9.4E-09 3.2E-13 80.2 3.7 37 190-226 3-39 (41)
25 1ymz_A CC45; artificial protei 98.7 9.2E-09 3.1E-13 81.1 3.6 40 221-269 2-41 (43)
26 2ysi_A Transcription elongatio 98.7 9.9E-09 3.4E-13 79.7 3.6 34 236-269 7-40 (40)
27 1e0m_A Wwprototype; SH3 protot 98.6 1.6E-08 5.5E-13 77.0 3.7 33 195-227 3-35 (37)
28 2ysh_A GAS-7, growth-arrest-sp 98.6 2.2E-08 7.5E-13 77.7 4.3 34 194-227 6-39 (40)
29 1ymz_A CC45; artificial protei 98.6 2.1E-08 7.2E-13 79.0 3.7 35 194-228 7-41 (43)
30 1wr3_A Ubiquitin-protein ligas 98.6 2.4E-08 8.2E-13 75.7 3.7 32 195-226 4-35 (36)
31 2dwv_A Salvador homolog 1 prot 98.6 4.1E-08 1.4E-12 79.5 5.0 45 218-268 1-45 (49)
32 2kyk_A E3 ubiquitin-protein li 98.6 4.3E-08 1.5E-12 75.6 4.3 32 195-226 6-37 (39)
33 1ywi_A Formin-binding protein 98.6 3.1E-08 1.1E-12 77.3 3.4 33 236-268 9-41 (41)
34 1wr4_A Ubiquitin-protein ligas 98.5 3.7E-08 1.3E-12 74.5 3.5 32 195-226 4-35 (36)
35 2b7e_A PRE-mRNA processing pro 98.5 9.6E-08 3.3E-12 79.7 6.1 53 514-567 4-58 (59)
36 1e0m_A Wwprototype; SH3 protot 98.5 5.8E-08 2E-12 73.9 4.3 33 236-268 3-35 (37)
37 2dmv_A Itchy homolog E3 ubiqui 98.5 5.6E-08 1.9E-12 76.6 4.1 34 194-227 6-39 (43)
38 2djy_A SMAD ubiquitination reg 98.5 5.9E-08 2E-12 76.1 4.0 36 192-227 4-39 (42)
39 2ysg_A Syntaxin-binding protei 98.5 7.2E-08 2.5E-12 74.8 4.2 33 194-226 6-38 (40)
40 2law_A Yorkie homolog; YAP, SM 98.5 4E-08 1.4E-12 75.4 2.5 32 195-226 6-37 (38)
41 2juc_A PRE-mRNA-splicing facto 98.5 1E-07 3.4E-12 79.5 5.1 52 514-566 7-58 (59)
42 2ysf_A E3 ubiquitin-protein li 98.5 1E-07 3.5E-12 74.0 4.1 34 194-227 6-39 (40)
43 1wr3_A Ubiquitin-protein ligas 98.4 1.4E-07 4.6E-12 71.5 4.3 32 236-267 4-35 (36)
44 2dk7_A Transcription elongatio 98.4 8.8E-08 3E-12 82.8 3.5 35 236-270 17-51 (73)
45 1i5h_W Rnedd4, ubiquitin ligas 98.4 1.3E-07 4.5E-12 76.9 4.3 35 194-228 10-44 (50)
46 2ysh_A GAS-7, growth-arrest-sp 98.4 1.5E-07 5.2E-12 72.9 4.4 32 236-267 7-38 (40)
47 2kpz_A E3 ubiquitin-protein li 98.4 1.1E-07 3.6E-12 77.2 3.5 35 194-228 11-45 (49)
48 2ez5_W Dnedd4, E3 ubiquitin-pr 98.4 1.3E-07 4.6E-12 75.6 3.8 34 194-227 9-42 (46)
49 1wr7_A NEDD4-2; all-beta, liga 98.4 1.8E-07 6.1E-12 73.0 4.4 34 235-268 7-40 (41)
50 3l4h_A E3 ubiquitin-protein li 98.4 2E-08 6.9E-13 93.8 -1.2 59 196-268 46-104 (109)
51 2jxw_A WW domain-binding prote 98.4 1.4E-07 4.9E-12 83.1 4.3 35 193-227 41-75 (75)
52 2l5f_A PRE-mRNA-processing fac 98.4 4.4E-08 1.5E-12 89.8 0.5 35 196-230 53-87 (92)
53 2l4j_A YES-associated protein 98.4 2.1E-07 7.3E-12 74.4 4.4 34 194-227 10-43 (46)
54 2law_A Yorkie homolog; YAP, SM 98.4 1.6E-07 5.3E-12 72.1 3.4 32 236-267 6-37 (38)
55 2ysb_A Salvador homolog 1 prot 98.4 1.8E-07 6.1E-12 75.8 3.8 35 194-228 10-44 (49)
56 1wr4_A Ubiquitin-protein ligas 98.4 2.5E-07 8.7E-12 69.9 4.4 32 236-267 4-35 (36)
57 2dk1_A WW domain-binding prote 98.4 1.1E-07 3.9E-12 77.2 2.6 34 237-270 5-38 (50)
58 2kyk_A E3 ubiquitin-protein li 98.4 2.5E-07 8.6E-12 71.3 4.3 32 236-267 6-37 (39)
59 2jv4_A Peptidyl-prolyl CIS/tra 98.4 1.8E-07 6.1E-12 77.3 3.6 36 194-229 6-42 (54)
60 2zaj_A Membrane-associated gua 98.3 2.3E-07 7.9E-12 75.1 3.2 34 194-227 12-45 (49)
61 2ysg_A Syntaxin-binding protei 98.3 3.5E-07 1.2E-11 70.9 4.2 32 236-267 7-38 (40)
62 2dmv_A Itchy homolog E3 ubiqui 98.3 3.8E-07 1.3E-11 71.8 4.4 33 236-268 7-39 (43)
63 2kpz_A E3 ubiquitin-protein li 98.3 4.2E-07 1.4E-11 73.7 4.5 34 235-268 11-44 (49)
64 2dwv_A Salvador homolog 1 prot 98.3 3.3E-07 1.1E-11 74.3 3.6 37 191-227 9-45 (49)
65 1e0n_A Hypothetical protein; Y 98.3 4.1E-07 1.4E-11 64.6 3.6 27 239-266 1-27 (27)
66 2ysf_A E3 ubiquitin-protein li 98.3 5E-07 1.7E-11 70.1 4.4 33 236-268 7-39 (40)
67 1e0n_A Hypothetical protein; Y 98.3 2.9E-07 9.8E-12 65.3 2.5 27 198-225 1-27 (27)
68 2djy_A SMAD ubiquitination reg 98.3 6E-07 2.1E-11 70.4 4.4 34 235-268 6-39 (42)
69 2ysc_A Amyloid beta A4 precurs 98.3 5.1E-07 1.7E-11 69.6 3.8 32 194-226 7-38 (39)
70 2ez5_W Dnedd4, E3 ubiquitin-pr 98.3 7E-07 2.4E-11 71.4 4.5 33 236-268 10-42 (46)
71 2ysd_A Membrane-associated gua 98.3 7.8E-07 2.7E-11 74.3 5.0 35 194-228 13-47 (57)
72 2jv4_A Peptidyl-prolyl CIS/tra 98.2 5.4E-07 1.8E-11 74.4 3.8 34 236-269 7-41 (54)
73 2l4j_A YES-associated protein 98.2 8.2E-07 2.8E-11 71.0 4.5 34 235-268 10-43 (46)
74 2ho2_A Fe65 protein, amyloid b 98.2 6.2E-07 2.1E-11 68.7 3.5 32 195-227 3-34 (38)
75 1i5h_W Rnedd4, ubiquitin ligas 98.2 9.2E-07 3.1E-11 71.9 4.5 33 236-268 11-43 (50)
76 2jmf_A E3 ubiquitin-protein li 98.2 8.1E-07 2.8E-11 73.1 4.1 35 194-228 17-51 (53)
77 2ysb_A Salvador homolog 1 prot 98.2 9.4E-07 3.2E-11 71.6 4.3 33 236-268 11-43 (49)
78 2yse_A Membrane-associated gua 98.2 5.5E-07 1.9E-11 75.8 2.9 35 194-228 12-46 (60)
79 2ho2_A Fe65 protein, amyloid b 98.2 1.4E-06 4.9E-11 66.7 4.3 32 236-268 3-34 (38)
80 2zaj_A Membrane-associated gua 98.2 1.1E-06 3.8E-11 71.1 3.7 34 235-268 12-45 (49)
81 2jx8_A Hpcif1, phosphorylated 98.2 6E-07 2E-11 73.6 2.1 34 195-228 10-44 (52)
82 2jmf_A E3 ubiquitin-protein li 98.1 2E-06 6.9E-11 70.7 4.2 34 235-268 17-50 (53)
83 2jx8_A Hpcif1, phosphorylated 98.1 6.9E-07 2.3E-11 73.2 1.3 33 236-268 10-43 (52)
84 1wmv_A WWOX, WW domain contain 98.1 2.1E-06 7.3E-11 70.9 3.9 35 195-229 11-45 (54)
85 2yse_A Membrane-associated gua 98.1 2.4E-06 8.1E-11 72.0 4.0 34 236-269 13-46 (60)
86 2ysd_A Membrane-associated gua 98.0 3.1E-06 1.1E-10 70.7 4.4 33 236-268 14-46 (57)
87 2ysc_A Amyloid beta A4 precurs 98.0 2.8E-06 9.7E-11 65.5 3.5 32 235-267 7-38 (39)
88 2e45_A Fe65 protein, amyloid b 98.0 2.8E-06 9.7E-11 69.4 3.1 34 193-227 17-50 (55)
89 2kxq_A E3 ubiquitin-protein li 98.0 4.7E-06 1.6E-10 75.9 5.0 36 192-227 52-87 (90)
90 1wmv_A WWOX, WW domain contain 98.0 5.1E-06 1.7E-10 68.6 4.3 33 236-268 11-43 (54)
91 1jmq_A YAP65, 65 kDa YES-assoc 98.0 3.8E-06 1.3E-10 67.0 3.3 33 236-268 8-40 (46)
92 1jmq_A YAP65, 65 kDa YES-assoc 97.9 3.1E-06 1.1E-10 67.5 1.8 35 194-228 7-41 (46)
93 1o6w_A PRP40, PRE-mRNA process 97.9 1.1E-05 3.9E-10 70.8 5.5 35 239-273 2-36 (75)
94 1tk7_A CG4244-PB; WW domain, n 97.8 6.2E-06 2.1E-10 74.8 2.9 32 195-226 56-87 (88)
95 2e45_A Fe65 protein, amyloid b 97.8 1E-05 3.4E-10 66.2 3.5 32 235-267 18-49 (55)
96 2dof_A Transcription elongatio 97.8 2.9E-05 9.8E-10 69.1 5.7 62 575-637 11-75 (85)
97 2kfd_A PRE-mRNA-processing pro 97.7 8.2E-05 2.8E-09 62.8 7.0 49 792-840 15-67 (69)
98 2dof_A Transcription elongatio 97.5 0.00018 6.1E-09 64.1 6.7 58 445-502 16-75 (85)
99 3tc5_A Peptidyl-prolyl CIS-tra 97.3 8.3E-05 2.9E-09 75.2 3.4 35 194-228 8-43 (166)
100 3l4h_A E3 ubiquitin-protein li 97.3 0.00012 4.1E-09 68.5 3.8 35 194-228 71-105 (109)
101 3tc5_A Peptidyl-prolyl CIS-tra 97.1 0.00028 9.5E-09 71.4 4.4 34 236-269 9-43 (166)
102 1eg3_A Dystrophin; EF-hand lik 96.7 0.00065 2.2E-08 73.4 2.7 34 194-227 10-43 (261)
103 1eg3_A Dystrophin; EF-hand lik 96.4 0.0021 7.3E-08 69.4 5.1 38 235-272 10-47 (261)
104 3olm_A E3 ubiquitin-protein li 95.6 0.0033 1.1E-07 72.6 1.5 35 194-228 7-41 (429)
105 3olm_A E3 ubiquitin-protein li 94.8 0.0096 3.3E-07 68.7 2.4 33 236-268 8-40 (429)
106 1yw5_A Peptidyl prolyl CIS/tra 94.0 0.034 1.2E-06 56.4 4.2 34 195-228 7-41 (177)
107 2kfd_A PRE-mRNA-processing pro 93.8 0.15 5.3E-06 43.2 6.9 52 446-497 11-67 (69)
108 1yw5_A Peptidyl prolyl CIS/tra 92.9 0.071 2.4E-06 54.1 4.3 34 236-269 7-41 (177)
109 3iot_A Maltose-binding protein 85.2 0.16 5.3E-06 58.1 -0.3 8 101-108 432-439 (449)
110 3le4_A Microprocessor complex 82.4 1.4 4.9E-05 38.1 4.5 34 236-269 28-61 (79)
111 2k85_A Glucocorticoid receptor 67.6 13 0.00046 31.8 6.5 57 513-570 9-68 (69)
112 3le4_A Microprocessor complex 62.7 6.4 0.00022 34.1 3.7 38 193-230 26-63 (79)
113 2k85_A Glucocorticoid receptor 62.2 8.4 0.00029 33.0 4.3 57 657-718 11-68 (69)
114 1v9d_A Diaphanous protein homo 48.8 1.4E+02 0.0049 32.7 13.0 29 831-859 293-321 (340)
115 3qf7_D MRE11; ABC-ATPase, ATPa 36.8 35 0.0012 26.5 3.7 19 619-637 4-22 (50)
116 3obv_E Protein diaphanous homo 35.9 4.5E+02 0.015 30.1 14.9 29 830-858 363-391 (457)
117 3q7m_A Lipoprotein YFGL, BAMB; 32.0 27 0.00092 37.6 3.6 22 244-265 323-344 (376)
118 3obv_E Protein diaphanous homo 31.4 6.4E+02 0.022 28.8 16.7 53 766-818 318-370 (457)
119 3ecq_A Protein SPR0328, endo-a 31.3 15 0.00051 47.2 1.5 24 247-270 943-966 (1531)
120 1m2v_B SEC24, protein transpor 30.8 14 0.00049 46.4 1.3 11 836-846 913-923 (926)
121 2j1d_G DAAM1, disheveled-assoc 30.0 6.8E+02 0.023 28.7 17.3 69 765-852 329-397 (483)
122 2zxq_A Endo-alpha-N-acetylgala 25.1 16 0.00055 47.2 0.3 24 247-270 705-728 (1376)
123 2be1_A Serine/threonine-protei 25.0 50 0.0017 36.6 4.2 62 204-265 16-83 (339)
124 3q7m_A Lipoprotein YFGL, BAMB; 24.1 44 0.0015 35.9 3.5 59 205-266 246-304 (376)
125 1zxh_A Immunoglobulin G bindin 24.1 11 0.00039 30.7 -0.9 26 445-470 23-48 (56)
126 1deq_A Fibrinogen (alpha chain 21.3 8.3E+02 0.029 27.4 12.8 22 555-576 105-126 (390)
127 3si5_X Protein CASC5; BUBR1-bl 20.1 45 0.0015 22.6 1.5 15 830-844 7-21 (24)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=100.00 E-value=1.1e-39 Score=338.14 Aligned_cols=186 Identities=23% Similarity=0.437 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001916 444 NKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKML 523 (996)
Q Consensus 444 tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lL 523 (996)
|+++|+.+|++||++++|+++|+|+++|+.|++||||++| ++++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcH
Q 001916 524 EESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQW 603 (996)
Q Consensus 524 ee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~~~It~~TtW 603 (996)
+++ .|+++++|.+|..+|.+||||++|.++.||++||++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCH
Confidence 997 6999999999999999999999998889999999999999999999998999999999999999998 59999999
Q ss_pred HHHHHHhhhhhhhhcCCcc-cHHHHHHHHH
Q 001916 604 RKVQDRLEADERCSRLDKM-DRLEIFQEYL 632 (996)
Q Consensus 604 ~ev~~~L~~D~Ry~~L~~~-DrLelFed~I 632 (996)
.+|+..|.+|++|.+|+.. +|++||++||
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi 189 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYI 189 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHhhcCCCHHHHHHHHHHHh
Confidence 9999999999999999985 9999999998
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.93 E-value=2.5e-26 Score=238.07 Aligned_cols=184 Identities=20% Similarity=0.374 Sum_probs=142.5
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001916 514 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLES 593 (996)
Q Consensus 514 kare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~ 593 (996)
.+..+|++||.++ +|+++++|.++...|.+||||.+| +..+|+++|++|+..+.+.++++.+...+.++.+|..||.+
T Consensus 6 e~~~~F~~lL~~~-~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER-GVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT-TCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHc-CcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999996 699999999999999999999999 68999999999999998888888777778899999999998
Q ss_pred cccccCCCcHHHHHHHhhhhhhhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 001916 594 CDFIKANTQWRKVQDRLEADERCSRLDK-MDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALG 672 (996)
Q Consensus 594 ~~~It~~TtW~ev~~~L~~D~Ry~~L~~-~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~~~~g 672 (996)
.+ |++.++|.++...|.+|+||.++.. .+|..||++||..|.+.+.+.++. ..++++++|..||.++
T Consensus 84 ~~-i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~-------~r~~~~~~f~~lL~~~---- 151 (190)
T 3hfh_A 84 AX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXT-------RGEXIXSDFFELLSNH---- 151 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHH-------THHHHHHHHHHHHHTS----
T ss_pred cC-CCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHhC----
Confidence 75 9999999999999999999999987 799999999999998765543321 2236789999999986
Q ss_pred ccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHH
Q 001916 673 TLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVE 714 (996)
Q Consensus 673 ~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~Ve 714 (996)
.|+..|+|.+++..|.+||+|.++- +.+..++||++||+
T Consensus 152 ~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 152 HLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp CCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHhhChHhhcCC---CHHHHHHHHHHHhC
Confidence 6999999999999999999999752 22489999999984
No 3
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=168.86 Aligned_cols=79 Identities=46% Similarity=0.900 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHH
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 272 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 272 (996)
.+.+.+|+++++++||+||||+.|++|+|++|.++..+.+++.++++|+++.+.+|++||||+.|++|+|++|.++..+
T Consensus 10 ~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~ 88 (92)
T 2l5f_A 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDL 88 (92)
T ss_dssp TBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTS
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCCCCeeccCchhHhhh
Confidence 3457889999999999999999999999999999988877777899999999999999999999999999999998754
No 4
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-20 Score=162.94 Aligned_cols=73 Identities=33% Similarity=0.708 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 196 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 196 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++|+++++++||+||||++|++|+|++|.+++.+.+...++.+|+++++.+|++||||+.|++|+|++|.+
T Consensus 3 ~~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 3578999999999999999999999999999998887777889999999999999999999999999999963
No 5
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.74 E-value=9.6e-19 Score=152.50 Aligned_cols=64 Identities=47% Similarity=0.739 Sum_probs=61.2
Q ss_pred hhhhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHH
Q 001916 438 EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKK 501 (996)
Q Consensus 438 e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~ 501 (996)
+++.|+|++||+++|++||++++|+++|+|+++|++|++||||++|+++++||++|++||.++.
T Consensus 7 ~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~ 70 (71)
T 1uzc_A 7 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTE 70 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999999999999999999999999864
No 6
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.73 E-value=2.2e-18 Score=154.17 Aligned_cols=68 Identities=26% Similarity=0.409 Sum_probs=64.4
Q ss_pred hccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 441 AYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERR 509 (996)
Q Consensus 441 ~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr 509 (996)
.+.+++||+++|++||++++|+++|+|+++|++|++||||++|+ +.+||++|++||.++.++|++++|
T Consensus 12 ~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr 79 (82)
T 2dod_A 12 AIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGP 79 (82)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCS
T ss_pred ccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999997 999999999999999999888765
No 7
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.72 E-value=1.4e-18 Score=153.72 Aligned_cols=71 Identities=41% Similarity=0.830 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 198 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 198 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
++|+++++++||+||||+.|++|+|++|..+....+...++.+|+++.|.+|++||||+.|++|+|++|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 57999999999999999999999999999988777767788999999999999999999999999999964
No 8
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.71 E-value=3e-18 Score=142.62 Aligned_cols=56 Identities=25% Similarity=0.523 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHH-hcCccccccCC-hHHHHHHHHHHHHHH
Q 001916 445 KLEAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRT-LGERKTAFNEYLGQK 500 (996)
Q Consensus 445 keEAk~aFk~ML~e~~V~s~~tWeka~~~i-i~DpRY~al~t-~~ERKqlFeeYl~~r 500 (996)
++||+++|++||++++|+|+|||+++|+.| ++||||++|++ +.+||++|++||.+|
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999 89999999995 999999999999863
No 9
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.68 E-value=4.9e-17 Score=148.75 Aligned_cols=75 Identities=20% Similarity=0.461 Sum_probs=66.3
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCccch-----hhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT-----TIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~-----~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.+.+.+|+++++++||+||||+.|++|+|++|..+.. +.+...++.+|++++|.+|++||||+.|++|+|++|..
T Consensus 8 ~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 8 PDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 4568899999999999999999999999999987642 23345789999999999999999999999999999964
No 10
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.65 E-value=8.9e-17 Score=146.46 Aligned_cols=74 Identities=16% Similarity=0.522 Sum_probs=65.6
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCccchhh---hccCCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI---ERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~---e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.+.+.+|+++++++||+||||+.|++|+|++|....... ....++.+|+++.|.+|++||||+.|++|+|++|.
T Consensus 11 ~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 11 GPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 456789999999999999999999999999999876432 23467899999999999999999999999999995
No 11
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.31 E-value=1.5e-12 Score=117.09 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=58.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHH
Q 001916 443 ANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 504 (996)
Q Consensus 443 ~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keE 504 (996)
+.++.++++|+.||++++|+++++|++++++|.+||||.+|.+..+|+++|++||.++.+++
T Consensus 14 ~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 14 TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999988654
No 12
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.26 E-value=6.2e-13 Score=119.64 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHH
Q 001916 502 KQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKE 572 (996)
Q Consensus 502 keEkeekr~k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkE 572 (996)
++|+++++.+..+++++|+.||.+++ |+++|+|.+|..+|.+||||++|.++.+|++||++||..|++++
T Consensus 6 ~~EkEek~~r~~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 6 SGEKEDSKTRGEKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp SSCCCCSSCCHHHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34666777778899999999999997 99999999999999999999999999999999999999997653
No 13
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.26 E-value=3.4e-12 Score=113.12 Aligned_cols=65 Identities=25% Similarity=0.414 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhhc-CCCCCCCCHHHHHHHhcCcccccccCChhHHHHHHHHHHHHHHHHHH
Q 001916 784 AKKRKRLEDEFFDLLCSV-KEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAK 848 (996)
Q Consensus 784 ~rk~rR~~~~F~~lLk~~-k~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~~F~efi~~Lkek~~ 848 (996)
+++++|++++|++||+.. ++|+..++|++|+++|+++++|++|++|+.|+.||++||.+|++++.
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekcs 70 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQ 70 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHHc
Confidence 356788999999999998 58999999999999999999999999999999999999999998863
No 14
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.9e-12 Score=105.92 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHH
Q 001916 446 LEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLG 498 (996)
Q Consensus 446 eEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~ 498 (996)
++++..|++||.+++|+++++|+.+..+|++||||.+|++...|+.+|++||+
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999999996
No 15
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=105.15 Aligned_cols=52 Identities=27% Similarity=0.532 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCceeeccCccccccCCCCccchhh--hccCCCCCcEEEECCCC
Q 001916 198 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTI--ERADASTDWKEFTSPDG 249 (996)
Q Consensus 198 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~--e~~~~~~~W~e~~~~~G 249 (996)
+.|.+|++.|||+||||..|++|+|++|++|++.. ++++..++|++-.+.+|
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~k~~~~~~~ 73 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKKSGPSSG 73 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTTTSSSCSCC
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhcCHHHHHHHHhcCCccccCCCCC
Confidence 36999999999999999999999999999999884 57888999987665444
No 16
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.06 E-value=2.2e-10 Score=101.54 Aligned_cols=61 Identities=21% Similarity=0.489 Sum_probs=56.9
Q ss_pred HHHHhHHHHHHHHHHh-hcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHH
Q 001916 511 KLKKARDDYKKMLEES-VELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQK 571 (996)
Q Consensus 511 k~kkare~F~~lLee~-~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~Lkkk 571 (996)
++++++++|+.||+++ +.|+.+++|.+|+.+|+++|+|++|.++.+|+.||++||..|+++
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkek 68 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE 68 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998 579999999999999999999999999999999999999999765
No 17
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.98 E-value=2.4e-10 Score=87.33 Aligned_cols=35 Identities=49% Similarity=0.948 Sum_probs=31.9
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCccc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 229 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~ 229 (996)
+..+.|.+|.+++|++||||..|++|+|++|.+|+
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 34678999999999999999999999999999874
No 18
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.88 E-value=1.1e-09 Score=85.15 Aligned_cols=34 Identities=44% Similarity=0.921 Sum_probs=31.0
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
+.+..|.++++++|++||||..|++|+|++|.++
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 4567899999999999999999999999999864
No 19
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=98.85 E-value=4.6e-09 Score=91.54 Aligned_cols=55 Identities=27% Similarity=0.562 Sum_probs=51.1
Q ss_pred HHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHH
Q 001916 513 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDEL 568 (996)
Q Consensus 513 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~L 568 (996)
..++++|+.||.++ +|+++++|..+.++|.+||||++|.+..+|+++|++|+...
T Consensus 15 eea~~~F~~LL~e~-~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEK-RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHT-TCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 45789999999997 69999999999999999999999999999999999999863
No 20
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.78 E-value=2.6e-09 Score=81.59 Aligned_cols=34 Identities=44% Similarity=1.013 Sum_probs=31.6
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
....+|.++.+.+|++||||..|++|+|+.|.+|
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 4678999999999999999999999999999875
No 21
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.73 E-value=7.1e-09 Score=92.79 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHH
Q 001916 513 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAK 575 (996)
Q Consensus 513 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~ 575 (996)
..+...|+.||.++ +|+++++|..+.+.|.+||||.+|. ..+|+++|++|+....+.++++
T Consensus 17 eea~~~Fk~LL~e~-~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eeree 77 (82)
T 2dod_A 17 EARMKQFKDMLLER-GVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRS 77 (82)
T ss_dssp HHHHHHHHHHHHHT-TCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHc-CcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999997 6999999999999999999999996 8999999999999988776654
No 22
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.72 E-value=5.1e-09 Score=85.03 Aligned_cols=40 Identities=23% Similarity=0.630 Sum_probs=35.5
Q ss_pred CCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccC
Q 001916 197 QTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERAD 236 (996)
Q Consensus 197 ~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~ 236 (996)
.+.|.+|++++|+.||||..|++|+|++|.+++...+++.
T Consensus 6 ~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~~~ 45 (50)
T 2dk1_A 6 SGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTS 45 (50)
T ss_dssp SCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCSTTC
T ss_pred CCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHhcc
Confidence 3579999999999999999999999999999987766543
No 23
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.70 E-value=4e-09 Score=82.37 Aligned_cols=33 Identities=48% Similarity=1.030 Sum_probs=27.4
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
..+.+|++|++++|++||||..|++|+|++|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 346689999999999999999999999999964
No 24
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.68 E-value=9.4e-09 Score=80.24 Aligned_cols=37 Identities=22% Similarity=0.667 Sum_probs=33.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 190 PKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 190 ~~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
|....+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 p~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp TCCCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 4455667899999999999999999999999999996
No 25
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.68 E-value=9.2e-09 Score=81.10 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=31.3
Q ss_pred ccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 221 TWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 221 ~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
+|++|.. ++.+|++..|.+|++||||+.|++|+|+.|..+
T Consensus 2 ~we~~~~---------LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 2 SHGRSMP---------LPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp -----CC---------CCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CcccCCC---------CCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 6888864 467999999999999999999999999999753
No 26
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.67 E-value=9.9e-09 Score=79.68 Aligned_cols=34 Identities=41% Similarity=0.901 Sum_probs=31.2
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
..+.+|.++.+.+|++||||..|++|+|+.|.++
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 4678999999999999999999999999999753
No 27
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.63 E-value=1.6e-08 Score=77.03 Aligned_cols=33 Identities=36% Similarity=0.899 Sum_probs=30.4
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
+.+.+|+++.+++|++||||+.|++|+|++|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 457899999999999999999999999999974
No 28
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.63 E-value=2.2e-08 Score=77.66 Aligned_cols=34 Identities=38% Similarity=0.875 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|..
T Consensus 6 ~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 6 SGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp SSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 3457889999999999999999999999999963
No 29
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.60 E-value=2.1e-08 Score=79.02 Aligned_cols=35 Identities=34% Similarity=0.824 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|..+
T Consensus 7 ~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 7 MPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 34577999999999999999999999999999865
No 30
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.60 E-value=2.4e-08 Score=75.68 Aligned_cols=32 Identities=31% Similarity=0.784 Sum_probs=29.7
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 45789999999999999999999999999995
No 31
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.58 E-value=4.1e-08 Score=79.54 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=39.7
Q ss_pred cccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 218 RVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 218 ~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
+.|+|+.|... ..++.+|++..|.+|++||+|+.|++|+|+.|..
T Consensus 1 ~tt~W~~P~~~------~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 1 GSSGSSGPLER------EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSSCCSCCS------SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CeecCcCCCCC------CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 46899999752 4678999999999999999999999999999953
No 32
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.56 E-value=4.3e-08 Score=75.63 Aligned_cols=32 Identities=31% Similarity=0.754 Sum_probs=30.0
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 46789999999999999999999999999996
No 33
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.56 E-value=3.1e-08 Score=77.31 Aligned_cols=33 Identities=58% Similarity=1.097 Sum_probs=27.5
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..+.+|.++++.+|++||||..|++|+|+.|.+
T Consensus 9 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ---CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 457899999999999999999999999999964
No 34
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.55 E-value=3.7e-08 Score=74.50 Aligned_cols=32 Identities=41% Similarity=1.031 Sum_probs=29.7
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 45789999999999999999999999999995
No 35
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.54 E-value=9.6e-08 Score=79.72 Aligned_cols=53 Identities=23% Similarity=0.458 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHh-ccchhhhccCC-hHHHHHHHHHHHHH
Q 001916 514 KARDDYKKMLEESVELTSSTRWSKAVTMF-ENDERFKALER-ERDRKDMFDDHLDE 567 (996)
Q Consensus 514 kare~F~~lLee~~~I~~~TrW~~a~~~f-~~DpRfkAv~~-e~ERe~lFeeYi~~ 567 (996)
.|.++|++||.++ +|.+..+|..+.+.| .+||||.+|.+ ..+|+++|++|+..
T Consensus 4 Eae~aF~~lL~~~-~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~ 58 (59)
T 2b7e_A 4 EAEKEFITMLKEN-QVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN 58 (59)
T ss_dssp HHHHHHHHHHHHT-TCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhc
Confidence 5778999999997 799999999999999 89999999985 89999999999863
No 36
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.53 E-value=5.8e-08 Score=73.93 Aligned_cols=33 Identities=36% Similarity=0.864 Sum_probs=30.7
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 468899999999999999999999999999964
No 37
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.6e-08 Score=76.62 Aligned_cols=34 Identities=29% Similarity=0.814 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|..
T Consensus 6 ~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 6 SGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CSCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 3457899999999999999999999999999974
No 38
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.51 E-value=5.9e-08 Score=76.13 Aligned_cols=36 Identities=19% Similarity=0.523 Sum_probs=32.1
Q ss_pred CCCCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 192 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
...+.+.+|+++.|++|++||||+.|++|+|++|..
T Consensus 4 ~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 335568899999999999999999999999999974
No 39
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.50 E-value=7.2e-08 Score=74.82 Aligned_cols=33 Identities=33% Similarity=0.812 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|.
T Consensus 6 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 6 SGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SCCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 456889999999999999999999999999996
No 40
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.50 E-value=4e-08 Score=75.44 Aligned_cols=32 Identities=25% Similarity=0.744 Sum_probs=29.9
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 45789999999999999999999999999995
No 41
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1e-07 Score=79.55 Aligned_cols=52 Identities=19% Similarity=0.430 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHH
Q 001916 514 KARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD 566 (996)
Q Consensus 514 kare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~ 566 (996)
.++..|++||.+. .|++|++|.....+|.+||||.+|.+.+.|+++|++|++
T Consensus 7 d~k~~F~~LL~e~-~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 7 DERNIFFELFDRY-KLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp SSHHHHHHHHHHT-TCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 3678999999997 599999999999999999999999999999999999985
No 42
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.46 E-value=1e-07 Score=73.97 Aligned_cols=34 Identities=24% Similarity=0.584 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++|++||||+.|++|+|++|..
T Consensus 6 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 6 SGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 4567899999999999999999999999999963
No 43
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.44 E-value=1.4e-07 Score=71.52 Aligned_cols=32 Identities=28% Similarity=0.671 Sum_probs=30.1
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 46889999999999999999999999999995
No 44
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=8.8e-08 Score=82.83 Aligned_cols=35 Identities=34% Similarity=0.635 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
...+.|.++.+.|||+||||..|++|+|++|++|.
T Consensus 17 ipgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 17 IPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp CSSSSCEEEEESSSCEEEEETTTTEECSSCCTTTT
T ss_pred CCCCCcEEEECCCCCEEEecCcccceeccCChHhc
Confidence 34579999999999999999999999999999987
No 45
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.44 E-value=1.3e-07 Score=76.90 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.+++||+||||+.|++|+|++|...
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp SSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 45678999999999999999999999999999754
No 46
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.43 E-value=1.5e-07 Score=72.92 Aligned_cols=32 Identities=34% Similarity=0.929 Sum_probs=30.2
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|+++.|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 7 GLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SCCTTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 57889999999999999999999999999995
No 47
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.43 E-value=1.1e-07 Score=77.18 Aligned_cols=35 Identities=20% Similarity=0.610 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.|++|++||||+.|++|+|++|...
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 45678999999999999999999999999999754
No 48
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.41 E-value=1.3e-07 Score=75.56 Aligned_cols=34 Identities=24% Similarity=0.681 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|..
T Consensus 9 ~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 4568899999999999999999999999999975
No 49
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.41 E-value=1.8e-07 Score=73.01 Aligned_cols=34 Identities=24% Similarity=0.584 Sum_probs=31.3
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 7 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 7 SFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 4678999999999999999999999999999963
No 50
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=98.41 E-value=2e-08 Score=93.84 Aligned_cols=59 Identities=10% Similarity=0.265 Sum_probs=52.0
Q ss_pred CCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 196 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 196 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.+.+|+.+.++.|++||.|+.+.. ...++.||+..+|.+|++||.|+.|+.|+|++|..
T Consensus 46 ~p~~we~~~~~~~lV~~vn~~~d~--------------~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 46 DARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp CTHHHHHHTTCHHHHHHHHTTCCT--------------TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred CCcChhhhcCcCCceEEeccCCCC--------------CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 367899999999999999999742 13578999999999999999999999999999964
No 51
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.41 E-value=1.4e-07 Score=83.11 Aligned_cols=35 Identities=43% Similarity=0.767 Sum_probs=31.4
Q ss_pred CCCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 193 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 193 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
..+...+|+++++++||+||||..|++|+|++|.+
T Consensus 41 ~~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 41 KTAVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp SSSCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred ccCCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 34567889999999999999999999999999974
No 52
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.39 E-value=4.4e-08 Score=89.80 Aligned_cols=35 Identities=43% Similarity=0.839 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCCCCceeeccCccccccCCCCccch
Q 001916 196 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT 230 (996)
Q Consensus 196 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~ 230 (996)
...+|+++.+++||+||||+.|++|+|++|.++..
T Consensus 53 ~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~ 87 (92)
T 2l5f_A 53 SKCPWKEYKSDSGKTYYYNSQTKESRWAKPKELED 87 (92)
T ss_dssp HSCSEEEEECTTCCEEEEETTTTEEESCCCHHHHT
T ss_pred cccceEEEECCCCCEEEEECCCCCeeccCchhHhh
Confidence 45799999999999999999999999999998754
No 53
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.39 E-value=2.1e-07 Score=74.35 Aligned_cols=34 Identities=21% Similarity=0.649 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++|++||||+.|++|+|++|..
T Consensus 10 ~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 10 GPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp SCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 4568899999999999999999999999999964
No 54
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.39 E-value=1.6e-07 Score=72.12 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=30.2
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 57899999999999999999999999999996
No 55
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.38 E-value=1.8e-07 Score=75.80 Aligned_cols=35 Identities=26% Similarity=0.679 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|++..|++|++||||+.|++|+|++|...
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 45678999999999999999999999999999753
No 56
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.38 E-value=2.5e-07 Score=69.88 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=30.1
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 4 ~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 46889999999999999999999999999995
No 57
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.38 E-value=1.1e-07 Score=77.16 Aligned_cols=34 Identities=29% Similarity=0.765 Sum_probs=31.4
Q ss_pred CCCCcEEEECCCCCeEEEeCCCCeeeccCChHHH
Q 001916 237 ASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 237 ~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
..+.|.++.+.+|+.||||..|++|+|+.|.++.
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~ 38 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQ 38 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhh
Confidence 4578999999999999999999999999998874
No 58
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.37 E-value=2.5e-07 Score=71.34 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=30.3
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 57899999999999999999999999999995
No 59
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.37 E-value=1.8e-07 Score=77.30 Aligned_cols=36 Identities=33% Similarity=0.693 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEcC-CCCceeeccCccccccCCCCccc
Q 001916 194 EGVQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFELM 229 (996)
Q Consensus 194 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~l~ 229 (996)
...+.+|+++.|. .||+||||+.|++|+|++|....
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~ 42 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADTD 42 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTSC
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCcc
Confidence 4468899999997 79999999999999999998653
No 60
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.33 E-value=2.3e-07 Score=75.11 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|+++.|++||+||||+.|++|+|++|..
T Consensus 12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 4568899999999999999999999999999974
No 61
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.33 E-value=3.5e-07 Score=70.92 Aligned_cols=32 Identities=34% Similarity=0.698 Sum_probs=30.3
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
.++.+|++..|.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 7 GLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 57899999999999999999999999999995
No 62
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.8e-07 Score=71.83 Aligned_cols=33 Identities=27% Similarity=0.711 Sum_probs=30.7
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 7 GLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 578899999999999999999999999999964
No 63
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.31 E-value=4.2e-07 Score=73.66 Aligned_cols=34 Identities=24% Similarity=0.582 Sum_probs=31.2
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 11 ~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp -CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 4678999999999999999999999999999965
No 64
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.30 E-value=3.3e-07 Score=74.26 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=32.7
Q ss_pred CCCCCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 191 KSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 191 ~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
....+.+.+|++..|++|++||+|+.|++|+|+.|..
T Consensus 9 ~~~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 9 LEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 3345678899999999999999999999999999974
No 65
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.30 E-value=4.1e-07 Score=64.56 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=24.4
Q ss_pred CCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001916 239 TDWKEFTSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 239 ~~W~e~~~~~Gr~YyyN~~T~es~We~P 266 (996)
.+|+ +...+|+.||||..|++|+|+.|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3799 66689999999999999999988
No 66
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.30 E-value=5e-07 Score=70.07 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=30.7
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 7 GLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCSSEEEEECTTCCEEEEETTTCCEESSCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCcEecCCCCC
Confidence 578999999999999999999999999999963
No 67
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.28 E-value=2.9e-07 Score=65.35 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCceeeccCccccccCCC
Q 001916 198 TDWKEHTSADGRRYYFNKRTRVSTWDKP 225 (996)
Q Consensus 198 ~~W~e~~~~~Gr~YYyN~~T~~s~WekP 225 (996)
.+|+ +....|+.||||..|++|+|++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 3699 66667999999999999999998
No 68
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.27 E-value=6e-07 Score=70.38 Aligned_cols=34 Identities=15% Similarity=0.440 Sum_probs=31.2
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 6 ~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp SCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 3578999999999999999999999999999964
No 69
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.27 E-value=5.1e-07 Score=69.61 Aligned_cols=32 Identities=25% Similarity=0.773 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
.+.+.+|+++.|++| .||||+.|++|+|++|.
T Consensus 7 ~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 456889999999999 59999999999999995
No 70
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.25 E-value=7e-07 Score=71.37 Aligned_cols=33 Identities=18% Similarity=0.673 Sum_probs=30.9
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 10 ~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 10 PLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 578999999999999999999999999999964
No 71
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.25 E-value=7.8e-07 Score=74.25 Aligned_cols=35 Identities=20% Similarity=0.591 Sum_probs=32.1
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|++..|.+|++||||+.|++|+|+.|...
T Consensus 13 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 13 GPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 45689999999999999999999999999999865
No 72
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.25 E-value=5.4e-07 Score=74.43 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=31.2
Q ss_pred CCCCCcEEEECC-CCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSP-DGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~-~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.||++..|. +|++||||+.|++|+|+.|...
T Consensus 7 ~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 578999999995 8999999999999999999764
No 73
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.24 E-value=8.2e-07 Score=70.99 Aligned_cols=34 Identities=26% Similarity=0.642 Sum_probs=31.2
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 10 ~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 10 GPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp SCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 3578999999999999999999999999999963
No 74
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.23 E-value=6.2e-07 Score=68.73 Aligned_cols=32 Identities=22% Similarity=0.637 Sum_probs=29.1
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
+.+.+|+++.|.+| +||||+.|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 35788999999999 999999999999999964
No 75
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.22 E-value=9.2e-07 Score=71.95 Aligned_cols=33 Identities=30% Similarity=0.664 Sum_probs=30.8
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SCSTTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 578899999999999999999999999999964
No 76
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.21 E-value=8.1e-07 Score=73.09 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|++..|.+|++||||+.|++|+|+.|...
T Consensus 17 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSS
T ss_pred CCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCC
Confidence 45688999999999999999999999999999753
No 77
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.20 E-value=9.4e-07 Score=71.57 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.0
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 11 PLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 578899999999999999999999999999965
No 78
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=5.5e-07 Score=75.85 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.|++||+||||+.|++|+|+.|...
T Consensus 12 ~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 45688999999999999999999999999999743
No 79
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.17 E-value=1.4e-06 Score=66.72 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=29.3
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++..|.+| +||||+.|++|+|+.|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 46889999999999 999999999999999953
No 80
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=71.15 Aligned_cols=34 Identities=15% Similarity=0.527 Sum_probs=31.0
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++..|.+|++||||+.|++|+|+.|..
T Consensus 12 ~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 12 LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 3578999999999999999999999999999963
No 81
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.15 E-value=6e-07 Score=73.60 Aligned_cols=34 Identities=35% Similarity=0.641 Sum_probs=30.3
Q ss_pred CCCCCcEEEEcC-CCCceeeccCccccccCCCCcc
Q 001916 195 GVQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 195 ~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~l 228 (996)
..+.+|+++.+. +||.||||..|++|+|++|...
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 346799999986 6999999999999999999765
No 82
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.10 E-value=2e-06 Score=70.74 Aligned_cols=34 Identities=12% Similarity=0.419 Sum_probs=31.4
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
..++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 17 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 3578999999999999999999999999999964
No 83
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.09 E-value=6.9e-07 Score=73.24 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=29.5
Q ss_pred CCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|+++++ .+|+.||||+.||+|+|+.|..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 35789999998 5899999999999999999954
No 84
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.07 E-value=2.1e-06 Score=70.87 Aligned_cols=35 Identities=14% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCCccc
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 229 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~ 229 (996)
+.+.+|+...|++|++||||+.|+.|+|+.|....
T Consensus 11 ~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~ 45 (54)
T 1wmv_A 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAF 45 (54)
T ss_dssp CSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSC
T ss_pred CCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCcc
Confidence 46889999999999999999999999999997543
No 85
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.4e-06 Score=72.00 Aligned_cols=34 Identities=15% Similarity=0.459 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.+|++..|.+|++||||+.|+.|+|+.|..-
T Consensus 13 ~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 13 ELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 5689999999999999999999999999999764
No 86
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.05 E-value=3.1e-06 Score=70.67 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=31.1
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|++.+|.+|++||||+.|++|+|+.|..
T Consensus 14 ~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp SCCSSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 578999999999999999999999999999965
No 87
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.02 E-value=2.8e-06 Score=65.46 Aligned_cols=32 Identities=19% Similarity=0.696 Sum_probs=28.9
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
..++.+|++.+|.+| .||||+.|++|+|+.|.
T Consensus 7 ~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 357899999999999 59999999999999994
No 88
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.99 E-value=2.8e-06 Score=69.40 Aligned_cols=34 Identities=21% Similarity=0.599 Sum_probs=30.7
Q ss_pred CCCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 193 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 193 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
..+.+.+|+++.|+.| +||||+.|+.|||+.|..
T Consensus 17 ~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 17 DSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 3456899999999999 999999999999999964
No 89
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.99 E-value=4.7e-06 Score=75.94 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=32.3
Q ss_pred CCCCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 192 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 192 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
...+.+.+|+++.|.+|++||||+.|++|+|+.|..
T Consensus 52 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 52 ELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp GTCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred cccccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 345678999999999999999999999999999974
No 90
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.97 E-value=5.1e-06 Score=68.62 Aligned_cols=33 Identities=18% Similarity=0.513 Sum_probs=30.9
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|+..+|.+|++||||+.|+.|+|+.|..
T Consensus 11 ~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 11 DLPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CSCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 578999999999999999999999999999964
No 91
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.96 E-value=3.8e-06 Score=67.04 Aligned_cols=33 Identities=18% Similarity=0.646 Sum_probs=30.8
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.||+...+.+|+.||+|+.|++|+|++|..
T Consensus 8 ~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 8 PLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 578999999999999999999999999999975
No 92
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.90 E-value=3.1e-06 Score=67.52 Aligned_cols=35 Identities=23% Similarity=0.615 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.+++||+||+|++|++|+|+.|...
T Consensus 7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence 35688999999999999999999999999999754
No 93
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=97.89 E-value=1.1e-05 Score=70.78 Aligned_cols=35 Identities=46% Similarity=0.853 Sum_probs=31.7
Q ss_pred CCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHH
Q 001916 239 TDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR 273 (996)
Q Consensus 239 ~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~ 273 (996)
.+|.++++.+|++||||+.|++|+|+.|..+....
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~ 36 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQE 36 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHH
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccc
Confidence 48999999999999999999999999999876543
No 94
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.84 E-value=6.2e-06 Score=74.85 Aligned_cols=32 Identities=25% Similarity=0.633 Sum_probs=29.5
Q ss_pred CCCCCcEEEEcCCCCceeeccCccccccCCCC
Q 001916 195 GVQTDWKEHTSADGRRYYFNKRTRVSTWDKPF 226 (996)
Q Consensus 195 ~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~ 226 (996)
+.+.+|+++.|++|++||||+.|++|+|++|.
T Consensus 56 ~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 56 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred ccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 34679999999999999999999999999995
No 95
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.82 E-value=1e-05 Score=66.20 Aligned_cols=32 Identities=25% Similarity=0.708 Sum_probs=29.7
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCCh
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPD 267 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~ 267 (996)
..++.||+++.|.+| +||||+.|+.|+|+.|.
T Consensus 18 ~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 18 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp SCCCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 367999999999999 99999999999999984
No 96
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.76 E-value=2.9e-05 Score=69.10 Aligned_cols=62 Identities=21% Similarity=0.471 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCcHHHHHHHhhhhhhhh---cCCcccHHHHHHHHHHHHHH
Q 001916 575 KAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS---RLDKMDRLEIFQEYLNDLEK 637 (996)
Q Consensus 575 ~~r~~rkra~~ef~~lL~~~~~It~~TtW~ev~~~L~~D~Ry~---~L~~~DrLelFed~I~~Lek 637 (996)
..+..+..+...|.+||..+. -++..+|.+++..|..|+||. .|+..+++.||.+||+.|.+
T Consensus 11 re~h~r~EA~~~F~aLL~DlI-r~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~ 75 (85)
T 2dof_A 11 REQHKREEAIQNFKALLSDMV-RSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTK 75 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-CCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 344557789999999998752 468899999999999999997 46778999999999998865
No 97
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=8.2e-05 Score=62.83 Aligned_cols=49 Identities=33% Similarity=0.551 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCC---CCCCCCHHHHHHHhcCcccccccCCh-hHHHHHHHHHH
Q 001916 792 DEFFDLLCSVKE---ISATSTWENCRQLLEGSQEFSSIGDE-SICRGVFDEFV 840 (996)
Q Consensus 792 ~~F~~lLk~~k~---I~~~stWee~k~~i~~~~ey~~L~~e-~~r~~~F~efi 840 (996)
..|.-||+.+-. -....+||++++.|++.+||++|++| +++++||++|.
T Consensus 15 ~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 15 HYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 457778887532 35778999999999999999999765 89999999985
No 98
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=97.48 E-value=0.00018 Score=64.06 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccC--ChHHHHHHHHHHHHHHHH
Q 001916 445 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALR--TLGERKTAFNEYLGQKKK 502 (996)
Q Consensus 445 keEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~--t~~ERKqlFeeYl~~r~k 502 (996)
.+||+..|..||.+.--++..+|..+.+.|-.||||..++ +..+|+.||++.|..+.+
T Consensus 16 r~EA~~~F~aLL~DlIr~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~ 75 (85)
T 2dof_A 16 REEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTK 75 (85)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999543 568999999999998865
No 99
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.35 E-value=8.3e-05 Score=75.18 Aligned_cols=35 Identities=37% Similarity=0.773 Sum_probs=28.5
Q ss_pred CCCCCCcEEEEcC-CCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSA-DGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+++.|+ .|++||||+.|++|+|+.|...
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 3468899999995 7999999999999999999644
No 100
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.32 E-value=0.00012 Score=68.53 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+...|++|++||.|+.|+.|+|+.|...
T Consensus 71 ~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 71 LELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp SCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred CCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 35688999999999999999999999999999743
No 101
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.12 E-value=0.00028 Score=71.35 Aligned_cols=34 Identities=32% Similarity=0.763 Sum_probs=28.8
Q ss_pred CCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.+|+.+.| ..|++||||+.|++|+|+.|...
T Consensus 9 ~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 9 KLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp -CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 47899999999 69999999999999999999653
No 102
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=96.65 E-value=0.00065 Score=73.39 Aligned_cols=34 Identities=32% Similarity=0.666 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFE 227 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~ 227 (996)
.+.+.+|++..+++|++||.||.|+.|+|+.|.-
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCch
Confidence 4567799999999999999999999999999974
No 103
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=96.44 E-value=0.0021 Score=69.35 Aligned_cols=38 Identities=26% Similarity=0.540 Sum_probs=34.0
Q ss_pred cCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHH
Q 001916 235 ADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLA 272 (996)
Q Consensus 235 ~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~ 272 (996)
..++.||++..|++|++||.|+.|+.|+|+.|......
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~ 47 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELY 47 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCchhhhh
Confidence 36788999999999999999999999999999876543
No 104
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0033 Score=72.61 Aligned_cols=35 Identities=23% Similarity=0.590 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCceeeccCccccccCCCCcc
Q 001916 194 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 194 ~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l 228 (996)
.+.+.+|+...|++|++||.||.|+.|+|+.|...
T Consensus 7 ~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~ 41 (429)
T 3olm_A 7 GPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41 (429)
T ss_dssp CCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSC
T ss_pred CCCCCCceeEECCCCCeEEEeCCCcceeccCCCCC
Confidence 34688999999999999999999999999999754
No 105
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.0096 Score=68.72 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=30.7
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDE 268 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~ 268 (996)
.++.+|+..+|++|++||.|+.|+.|+|++|+.
T Consensus 8 ~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 578999999999999999999999999999964
No 106
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=94.04 E-value=0.034 Score=56.41 Aligned_cols=34 Identities=29% Similarity=0.802 Sum_probs=30.2
Q ss_pred CCCCCcEEEEcCC-CCceeeccCccccccCCCCcc
Q 001916 195 GVQTDWKEHTSAD-GRRYYFNKRTRVSTWDKPFEL 228 (996)
Q Consensus 195 ~~~~~W~e~~~~~-Gr~YYyN~~T~~s~WekP~~l 228 (996)
..+.+|+...+.. |+.||||.+|++++|+.|...
T Consensus 7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 3678999999986 999999999999999999753
No 107
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.15 Score=43.21 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHh-CCCC---CCCcHHHHHHHHhcCccccccCCh-HHHHHHHHHHH
Q 001916 446 LEAKNAFKALLES-ANVG---SDWTWDQALRAIINDRRYGALRTL-GERKTAFNEYL 497 (996)
Q Consensus 446 eEAk~aFk~ML~e-~~V~---s~~tWeka~~~ii~DpRY~al~t~-~ERKqlFeeYl 497 (996)
|+-+.-|+-||.. ..++ --.+|+.|...|.+-|.|.+|.+. .-++|+|++|.
T Consensus 11 EqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 11 EQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 4557788888864 4333 334999999999999999999654 78999999984
No 108
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=92.90 E-value=0.071 Score=54.09 Aligned_cols=34 Identities=24% Similarity=0.559 Sum_probs=30.1
Q ss_pred CCCCCcEEEEC-CCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTS-PDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~-~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.+|+...+ ..|+.||||..|++++|+.|..+
T Consensus 7 ~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 7 GLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 47899999998 57999999999999999998653
No 109
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=85.18 E-value=0.16 Score=58.09 Aligned_cols=8 Identities=38% Similarity=0.435 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 001916 101 SYPPGLGG 108 (996)
Q Consensus 101 ~~~p~~~~ 108 (996)
++.++.|.
T Consensus 432 ~~~~~~~~ 439 (449)
T 3iot_A 432 SYQITAGK 439 (449)
T ss_dssp --------
T ss_pred CcccCCCc
Confidence 33333343
No 110
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=82.44 E-value=1.4 Score=38.05 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCCCCcEEEECCCCCeEEEeCCCCeeeccCChHH
Q 001916 236 DASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDEL 269 (996)
Q Consensus 236 ~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~ 269 (996)
.++.||..+...+|-+-||+..|+..+|..|=.+
T Consensus 28 ~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred cCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 5789999999999999999999999999999765
No 111
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=67.56 E-value=13 Score=31.80 Aligned_cols=57 Identities=19% Similarity=0.411 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhh---ccCChHHHHHHHHHHHHHHHH
Q 001916 513 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK---ALERERDRKDMFDDHLDELKQ 570 (996)
Q Consensus 513 kkare~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfk---Av~~e~ERe~lFeeYi~~Lkk 570 (996)
..|.+.|..|+... .-+.+..|..+.+++...|.|. .|..-.--+.||.-+|..|+.
T Consensus 9 ~satd~~e~LIr~~-Vtd~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 9 ATAKDKYEWLVSRI-VKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp THHHHHHHHHHHHH-CSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 34678888887654 4567899999999999999887 455556778999999999875
No 112
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=62.72 E-value=6.4 Score=34.08 Aligned_cols=38 Identities=29% Similarity=0.605 Sum_probs=33.8
Q ss_pred CCCCCCCcEEEEcCCCCceeeccCccccccCCCCccch
Q 001916 193 AEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMT 230 (996)
Q Consensus 193 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~ 230 (996)
..+.+.+|....-..|=.-||+..|+..+|.+|.-+.+
T Consensus 26 ~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG~ 63 (79)
T 3le4_A 26 TEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGT 63 (79)
T ss_dssp CCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCCTT
T ss_pred CCcCCCccEEEEecCCceEEEeccceEEeccCCeEecC
Confidence 34568899999999999999999999999999987754
No 113
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=62.22 E-value=8.4 Score=33.02 Aligned_cols=57 Identities=25% Similarity=0.443 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhcCccccCCChHHHHHHhhCChhhhhhhcCCCCC-ChHHHHHHHHHHHHH
Q 001916 657 NRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGS-TPKDLFEDVVEELQK 718 (996)
Q Consensus 657 ~Rd~Fk~LL~e~~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gS-tpldLF~D~VeeL~k 718 (996)
+-|.|..|....+. ....+|..+...|...|.|...+ ++-|. .+.-||..+|..|+.
T Consensus 11 atd~~e~LIr~~Vt----d~~~~W~~~skkL~~~pE~~~yv-~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 11 AKDKYEWLVSRIVK----NHNENWLSVSRKMQASPEYQDYV-YLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHCS----SSCSCHHHHHHHHTTSHHHHHHH-HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hHHHHhHHHHHHHhcCccHHHHH-HHhChHHHHHHHHHHHHHhhc
Confidence 45778888766654 46789999999999999998876 45664 457899999998864
No 114
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=48.84 E-value=1.4e+02 Score=32.68 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 831 ICRGVFDEFVTQLKEQAKDYERKRKEEKA 859 (996)
Q Consensus 831 ~r~~~F~efi~~Lkek~~e~er~r~~e~~ 859 (996)
.--.+|.+|+..++.-.+|.++.++.|++
T Consensus 293 ~fF~~~~~F~~~f~~a~~en~~r~e~eek 321 (340)
T 1v9d_A 293 EFFMDLHNFRNMFLQAVKENQKRRETEEK 321 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467889999998888888765554443
No 115
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=36.83 E-value=35 Score=26.48 Aligned_cols=19 Identities=53% Similarity=0.943 Sum_probs=13.0
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 001916 619 LDKMDRLEIFQEYLNDLEK 637 (996)
Q Consensus 619 L~~~DrLelFed~I~~Lek 637 (996)
++++|-.++|.+|++..++
T Consensus 4 ~~kld~felfkey~k~r~~ 22 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREE 22 (50)
T ss_dssp ---CCHHHHHHHHHHHHCT
T ss_pred hhHhhHHHHHHHHHHHHHh
Confidence 6788999999999976444
No 116
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=35.89 E-value=4.5e+02 Score=30.09 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 830 SICRGVFDEFVTQLKEQAKDYERKRKEEK 858 (996)
Q Consensus 830 ~~r~~~F~efi~~Lkek~~e~er~r~~e~ 858 (996)
+.--.+|..|+..++.-.+|.++.++.|+
T Consensus 363 ~eFF~~~~~F~~~fkkA~~eN~~r~e~ee 391 (457)
T 3obv_E 363 EEFFMDLHNFRNMFLQAVKENQKRRETEE 391 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888999999888888876544333
No 117
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=32.02 E-value=27 Score=37.65 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.4
Q ss_pred EECCCCCeEEEeCCCCeeeccC
Q 001916 244 FTSPDGRKYYYNKVTKQSKWSL 265 (996)
Q Consensus 244 ~~~~~Gr~YyyN~~T~es~We~ 265 (996)
+.+.+|.+|.||..||+..|..
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEE
Confidence 3456899999999999999974
No 118
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=31.43 E-value=6.4e+02 Score=28.83 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHhc
Q 001916 766 KLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLE 818 (996)
Q Consensus 766 k~iFe~li~r~kEKeeke~rk~rR~~~~F~~lLk~~k~I~~~stWee~k~~i~ 818 (996)
...+..++..+.++-+.-....+.+...|..++..+..-..+.+.+++=.+|.
T Consensus 318 ~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~ 370 (457)
T 3obv_E 318 VEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLH 370 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 33445566655544333223334556667777776543223344555555544
No 119
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=31.26 E-value=15 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.746 Sum_probs=21.9
Q ss_pred CCCCeEEEeCCCCeeeccCChHHH
Q 001916 247 PDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 247 ~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
...|.|+||...|+|+|++|..+.
T Consensus 943 ~~eKLYH~N~~GGtsTW~LP~~w~ 966 (1531)
T 3ecq_A 943 DKEKMYYFNTQAGATTWTLPSDWA 966 (1531)
T ss_dssp GGCEEEEEESSCSEEEEECCHHHH
T ss_pred CccceEEEcCCCCeEeeECCCccc
Confidence 357999999999999999999986
No 120
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=30.77 E-value=14 Score=46.38 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 001916 836 FDEFVTQLKEQ 846 (996)
Q Consensus 836 F~efi~~Lkek 846 (996)
|.+|+..|+.+
T Consensus 913 Y~dfL~~lh~~ 923 (926)
T 1m2v_B 913 YREFLQIMKAR 923 (926)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888877655
No 121
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=30.03 E-value=6.8e+02 Score=28.71 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHhcCcccccccCChhHHHHHHHHHHHHHH
Q 001916 765 LKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLK 844 (996)
Q Consensus 765 lk~iFe~li~r~kEKeeke~rk~rR~~~~F~~lLk~~k~I~~~stWee~k~~i~~~~ey~~L~~e~~r~~~F~efi~~Lk 844 (996)
+...+..++..+..+-..-.....++...|..++..+ ..++. .+. ...--.+|.+|+..++
T Consensus 329 f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yF----------------GEd~~--~~~-~~~fF~~~~~F~~~f~ 389 (483)
T 2j1d_G 329 FVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHF----------------GEEAG--KIQ-PDEFFGIFDQFLQAVS 389 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------TCCTT--SCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCCCC--CCC-HHHHHHHHHHHHHHHH
Confidence 4445566666655443332233344555666665543 32221 111 2344568889999998
Q ss_pred HHHHHHHH
Q 001916 845 EQAKDYER 852 (996)
Q Consensus 845 ek~~e~er 852 (996)
.-.++.++
T Consensus 390 ~A~~en~~ 397 (483)
T 2j1d_G 390 EAKQENEN 397 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777764
No 122
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=25.09 E-value=16 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=21.8
Q ss_pred CCCCeEEEeCCCCeeeccCChHHH
Q 001916 247 PDGRKYYYNKVTKQSKWSLPDELK 270 (996)
Q Consensus 247 ~~Gr~YyyN~~T~es~We~P~~~~ 270 (996)
.+.|.|+||...|+|+|++|..+.
T Consensus 705 ~~~KlYh~N~~gG~stW~Lp~~w~ 728 (1376)
T 2zxq_A 705 SEQKLYHWNTKGGTTTWTLPDSWK 728 (1376)
T ss_dssp GGCEEEEEESSCEEEEEECCGGGT
T ss_pred CcceeEEEeCCCCeeeEECCcccC
Confidence 467999999999999999999975
No 123
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=25.00 E-value=50 Score=36.57 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=42.2
Q ss_pred EcCCCCceeeccCccccccCCCCcc-chhhh---ccCCCCCcEEEE--CCCCCeEEEeCCCCeeeccC
Q 001916 204 TSADGRRYYFNKRTRVSTWDKPFEL-MTTIE---RADASTDWKEFT--SPDGRKYYYNKVTKQSKWSL 265 (996)
Q Consensus 204 ~~~~Gr~YYyN~~T~~s~WekP~~l-~~~~e---~~~~~~~W~e~~--~~~Gr~YyyN~~T~es~We~ 265 (996)
.+.||++|=+|..|++-.|.-.... ..+.. ......+..-+. +.||++|.+|..+|.-.|..
T Consensus 16 ~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 16 ADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 3779999999999999999865441 11110 011113344445 46999999999999888854
No 124
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=24.09 E-value=44 Score=35.92 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=41.5
Q ss_pred cCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCC
Q 001916 205 SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLP 266 (996)
Q Consensus 205 ~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P 266 (996)
+.+|.+|.||..|++..|..+...... .....+---+.+.+|.+|-||..||+..|..+
T Consensus 246 ~~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQIMWKRELGSVND---FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCCEEE---EEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred ecCcEEEEEECCCCcEEeeccCCCCCC---ceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 457999999999999999876432111 11112222234468999999999999999865
No 125
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=24.07 E-value=11 Score=30.72 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHH
Q 001916 445 KLEAKNAFKALLESANVGSDWTWDQA 470 (996)
Q Consensus 445 keEAk~aFk~ML~e~~V~s~~tWeka 470 (996)
-|+|+..|++-|.+.+|++-|+++.+
T Consensus 23 ~e~a~n~F~Qy~ndng~dg~w~yd~a 48 (56)
T 1zxh_A 23 AETARNAFIQSLKDDGVQGVWTYDDA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHTTSEECCCTT
T ss_pred HHHHHHHHHHHHhcCCccceeecccc
Confidence 57899999999999999999988754
No 126
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.26 E-value=8.3e+02 Score=27.38 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001916 555 RDRKDMFDDHLDELKQKERAKA 576 (996)
Q Consensus 555 ~ERe~lFeeYi~~LkkkEke~~ 576 (996)
.+-..+|.+|..+|+++...-+
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILR 126 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4677899999999988755443
No 127
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=20.13 E-value=45 Score=22.57 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHH
Q 001916 830 SICRGVFDEFVTQLK 844 (996)
Q Consensus 830 ~~r~~~F~efi~~Lk 844 (996)
++.+--|++||.+|+
T Consensus 7 sekKinfndFIKRLK 21 (24)
T 3si5_X 7 SENKIDFNDFIKRLK 21 (26)
T ss_pred hhhhccHHHHHHHHh
Confidence 445557999999997
Done!