Query 001917
Match_columns 996
No_of_seqs 398 out of 2889
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 5E-289 1E-293 2364.6 47.6 888 101-994 5-892 (892)
2 PLN00070 aconitate hydratase 100.0 2E-271 5E-276 2380.6 75.4 898 99-996 39-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 1E-267 3E-272 2345.7 73.3 895 91-996 4-898 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 5E-265 1E-269 2319.8 71.9 864 120-994 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 1E-263 3E-268 2313.9 72.6 876 102-995 3-889 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-262 2E-267 2302.1 74.4 875 102-996 4-888 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-258 4E-263 2255.7 70.4 834 120-995 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 2E-256 4E-261 2212.0 63.1 851 109-995 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 3E-177 7E-182 1566.3 58.7 697 158-989 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 4E-163 8E-168 1438.4 54.1 638 159-994 3-645 (646)
11 TIGR01342 acon_putative aconit 100.0 1E-160 2E-165 1415.2 53.4 643 160-995 1-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 1E-142 3E-147 1260.1 50.5 662 159-993 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 3E-140 6E-145 1245.3 51.3 685 158-992 34-751 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 1E-132 3E-137 1121.6 45.4 687 175-991 82-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 2E-129 4E-134 1085.8 36.3 400 184-668 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 2E-120 5E-125 1037.3 40.6 452 159-669 3-460 (465)
17 PRK12466 isopropylmalate isome 100.0 6E-120 1E-124 1035.0 41.1 453 158-669 3-462 (471)
18 PRK05478 isopropylmalate isome 100.0 1E-119 3E-124 1031.6 40.6 452 159-669 3-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 2E-120 4E-125 1041.6 33.1 457 160-666 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 7E-118 2E-122 1001.7 38.0 409 184-668 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 5E-114 1E-118 964.8 37.7 380 184-668 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 3E-113 7E-118 964.1 39.7 406 160-669 1-409 (412)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-112 2E-117 960.3 38.7 405 159-669 1-408 (412)
24 PRK00402 3-isopropylmalate deh 100.0 2E-112 3E-117 959.9 39.9 406 159-669 3-412 (418)
25 cd01585 AcnA_Bact Aconitase ca 100.0 1E-112 2E-117 951.9 36.1 379 183-668 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 1E-111 3E-116 950.8 40.0 409 159-669 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 1E-109 2E-114 910.8 36.3 410 159-669 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 3E-104 7E-109 894.6 37.0 402 162-668 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 2E-103 5E-108 870.7 35.5 361 184-668 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 4.1E-99 9E-104 850.5 36.5 388 184-668 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 5.1E-96 1E-100 868.3 39.9 410 156-669 368-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 6.3E-95 1.4E-99 856.4 41.3 408 157-669 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 2E-92 4.4E-97 832.6 39.6 410 156-669 441-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1E-67 2.2E-72 526.1 12.4 170 772-941 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 1.4E-46 3.1E-51 424.3 24.3 410 160-703 374-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 2.6E-42 5.5E-47 380.1 16.6 404 437-944 13-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 7.2E-39 1.6E-43 315.6 8.7 141 772-941 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 5.9E-35 1.3E-39 295.2 11.8 156 770-993 4-159 (163)
39 TIGR02087 LEUD_arch 3-isopropy 100.0 6.9E-35 1.5E-39 291.9 10.7 152 770-992 3-154 (154)
40 PRK14023 homoaconitate hydrata 100.0 8.4E-35 1.8E-39 294.5 11.2 155 770-993 4-158 (166)
41 TIGR02084 leud 3-isopropylmala 100.0 7.3E-35 1.6E-39 292.2 9.9 154 770-991 3-156 (156)
42 COG0066 LeuD 3-isopropylmalate 100.0 1.2E-34 2.7E-39 294.3 9.2 165 770-994 11-180 (191)
43 PF00694 Aconitase_C: Aconitas 100.0 1.5E-34 3.3E-39 281.9 1.4 128 796-923 3-130 (131)
44 PLN00072 3-isopropylmalate iso 100.0 3.5E-33 7.5E-38 295.3 11.1 173 763-993 68-241 (246)
45 TIGR00171 leuD 3-isopropylmala 100.0 5.1E-31 1.1E-35 271.3 9.0 163 768-983 10-174 (188)
46 cd01579 AcnA_Bact_Swivel Bacte 100.0 2.2E-31 4.8E-36 257.1 5.4 121 772-942 1-121 (121)
47 PRK01641 leuD isopropylmalate 100.0 1.4E-30 3.1E-35 270.4 8.3 160 768-983 10-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 99.9 1.5E-28 3.3E-33 226.0 5.1 73 869-942 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 4.6E-28 1E-32 221.4 5.8 71 869-941 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 1.2E-25 2.6E-30 269.2 12.3 165 763-994 165-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 2.8E-26 6.2E-31 221.2 4.1 100 773-923 2-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 6.9E-25 1.5E-29 242.9 5.2 419 159-667 67-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 2.4E-23 5.2E-28 203.0 6.4 67 869-941 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 2E-22 4.3E-27 241.1 11.4 164 762-993 165-342 (844)
55 PRK14812 hypothetical protein; 99.7 2.2E-18 4.8E-23 166.1 7.7 91 879-983 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.7 1.4E-17 3.1E-22 199.6 13.4 116 859-993 285-414 (938)
57 PF06434 Aconitase_2_N: Aconit 98.2 1.4E-06 3.1E-11 90.3 5.6 118 858-994 45-175 (204)
58 COG1049 AcnB Aconitase B [Ener 95.6 0.025 5.4E-07 67.5 7.3 117 859-992 214-342 (852)
59 PF04412 DUF521: Protein of un 95.2 0.055 1.2E-06 63.2 8.1 68 530-605 289-356 (400)
60 COG1679 Predicted aconitase [G 91.7 0.43 9.3E-06 55.0 7.3 68 530-605 289-356 (403)
61 cd01355 AcnX Putative Aconitas 85.4 1.8 4E-05 50.7 6.9 69 531-610 279-347 (389)
62 TIGR00829 FRU PTS system, fruc 26.6 52 0.0011 30.7 2.5 31 535-566 2-32 (85)
63 COG1445 FrwB Phosphotransferas 26.0 74 0.0016 32.0 3.5 33 533-566 4-36 (122)
64 PRK03600 nrdI ribonucleotide r 24.3 48 0.001 33.5 1.9 28 613-640 56-86 (134)
65 PF07972 Flavodoxin_NdrI: NrdI 21.8 48 0.001 33.2 1.4 42 598-640 41-85 (122)
66 COG0311 PDX2 Predicted glutami 20.0 1.2E+02 0.0025 32.8 3.8 75 568-645 38-114 (194)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-289 Score=2364.57 Aligned_cols=888 Identities=72% Similarity=1.197 Sum_probs=874.5
Q ss_pred cCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceEee
Q 001917 101 AEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPF 180 (996)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei~~ 180 (996)
+++||+...++|+..++ .++||+|++|. .++++||||||||||+++||||++.|++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 46899888899998764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhh
Q 001917 181 KPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLK 260 (996)
Q Consensus 181 ~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flk 260 (996)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||||+|+.++++|+++|+..||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEee
Q 001917 261 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 340 (996)
Q Consensus 261 w~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~ 340 (996)
|+.++|+|+.++|||+||+|||||||||||||++++++|||++|||||||||++|||++||||||||+|++|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHH
Q 001917 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQ 420 (996)
Q Consensus 341 vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~ 420 (996)
+|+|||++|+|+|.++||++||+|+||++||+.|++||||||||+|+++||++||+||+||+||||||+||||+|+.|+.
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhccccc
Q 001917 421 YLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 500 (996)
Q Consensus 421 YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 500 (996)
||++|||+++.++.+|.|+|+.++|+++..++.++.|++++++||++|+|+|+||+||||+++|++|+++|+.||++++|
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHH
Q 001917 501 FKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVV 580 (996)
Q Consensus 501 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V 580 (996)
||||.++++.+.+...+.|+|++++|.||+|+||+|+||||+|||++|++|+||||||+++|++|+|||||+++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHH
Q 001917 581 TKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 660 (996)
Q Consensus 581 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVa 660 (996)
+.||.++|+++||+++||.|+||||+|||||+|+|++++.++|.+|++++++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCccccCC
Q 001917 661 AYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDP 740 (996)
Q Consensus 661 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~ 740 (996)
||||+|+++|||++||||++++|+.|||+||||+++||+++++++|.|+||++.|+.|..|++.|++|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhh
Q 001917 741 NSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEV 820 (996)
Q Consensus 741 ~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~ev 820 (996)
+||||++||||++|+.+++++++|++|+||+.|||+||||||||||+|.++|||+|||.+||++++|||||||||||+||
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEe
Q 001917 821 MARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIA 900 (996)
Q Consensus 821 m~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA 900 (996)
|.||||+|||+.|+|+. +.||.|+|+|+||.+.|||||++|+++|.|+||+||++||+|||||||||+|.+||||||||
T Consensus 722 MaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAVia 800 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIA 800 (892)
T ss_pred hhcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHH
Confidence 99999999999999995 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHH
Q 001917 901 KSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYF 980 (996)
Q Consensus 901 ~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~ 980 (996)
||||||||+||++|||+||||..++++++|+|+|.|+++|.+++. .|+||+.|+|++++|+.|.+++|+||+.|+.||
T Consensus 801 eS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy 878 (892)
T KOG0452|consen 801 ESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYY 878 (892)
T ss_pred HHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEE
Confidence 999999999999999999999999999999999999999999984 399999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHh
Q 001917 981 DHGGILPFVIRNLI 994 (996)
Q Consensus 981 ~aGGiL~yv~rk~~ 994 (996)
++||||||+.||++
T Consensus 879 ~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 879 KNGGILNYMIRKLS 892 (892)
T ss_pred ecCCcHHHHHhhcC
Confidence 99999999999974
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=2.2e-271 Score=2380.57 Aligned_cols=898 Identities=92% Similarity=1.436 Sum_probs=858.9
Q ss_pred hccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceE
Q 001917 99 MAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (996)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei 178 (996)
|.+.++|...+++|+.+++++.|+||+|.+|...++++|||||||||||+||||||+.|++++|++|++|......+.||
T Consensus 39 m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei 118 (936)
T PLN00070 39 MASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEI 118 (936)
T ss_pred ccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCcee
Confidence 43347886544788876222339999999986567999999999999999999999999999999999998766667799
Q ss_pred eeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhh
Q 001917 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (996)
Q Consensus 179 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~f 258 (996)
+|+|+||+||||||+|+++|||||||+++++|+||++|||.+|||||||||||+|++++++|+.+|+.+||+||.|||.|
T Consensus 119 ~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~f 198 (936)
T PLN00070 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAF 198 (936)
T ss_pred ccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceE
Q 001917 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 338 (996)
Q Consensus 259 lkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~ 338 (996)
|||++++|+||+|+|||+|||||||+||||++|+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+|
T Consensus 199 lkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~ 278 (936)
T PLN00070 199 LKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 278 (936)
T ss_pred hhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999999997789999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhH
Q 001917 339 MVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVT 418 (996)
Q Consensus 339 l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T 418 (996)
|++||||||+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+|++|
T Consensus 279 ~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T 358 (936)
T PLN00070 279 MVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT 358 (936)
T ss_pred eeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhccc
Q 001917 419 LQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 498 (996)
Q Consensus 419 ~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~ 498 (996)
++||+.|||++++++++++|+|+|+||+++..+|++|+|+++++||||+|||+||||++|||++||++++++|.+++..+
T Consensus 359 ~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~ 438 (936)
T PLN00070 359 LQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 438 (936)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccc
Confidence 99999999999999999999999999997666789999999999999999999999999999999999999999988776
Q ss_pred ccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcH
Q 001917 499 VGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSG 578 (996)
Q Consensus 499 ~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~ 578 (996)
++.+|+..+.++.....+++|+|+++++++|+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~ 518 (936)
T PLN00070 439 VGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSG 518 (936)
T ss_pred ccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCH
Confidence 66555544333333335567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHH
Q 001917 579 VVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 658 (996)
Q Consensus 579 ~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~l 658 (996)
+|++||+++||+++|+++||+|++||||+||||+++++++++++|.+|+++++||+|+||||+|||||.+++||||||++
T Consensus 519 ~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~l 598 (936)
T PLN00070 519 VVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 598 (936)
T ss_pred HHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCcccc
Q 001917 659 VVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSW 738 (996)
Q Consensus 659 VaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~W 738 (996)
||||||+|+|+||+++||+|++++|++|||+||||+.+||++++.+.++|++|.+.|++++.+++.|++|++|++.+|+|
T Consensus 599 VaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~w 678 (936)
T PLN00070 599 VVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSW 678 (936)
T ss_pred HHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCCh
Q 001917 739 DPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGND 818 (996)
Q Consensus 739 d~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~ 818 (996)
|++||||++||||++++..++.+.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||||||
T Consensus 679 d~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ 758 (936)
T PLN00070 679 DPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGND 758 (936)
T ss_pred CCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcc
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEE
Q 001917 819 EVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAV 898 (996)
Q Consensus 819 evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAV 898 (996)
|||+||||+|+|++|+|++|++||+|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||
T Consensus 759 evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaV 838 (936)
T PLN00070 759 EIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 838 (936)
T ss_pred hhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHH
Q 001917 899 IAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELA 978 (996)
Q Consensus 899 IA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~ 978 (996)
||+||+||||+||+|||||||+|.++++++.+++.+++.|+|+++..+.+++||+.++++..+|++|++++++||+.|++
T Consensus 839 IA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~ 918 (936)
T PLN00070 839 IAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELA 918 (936)
T ss_pred EEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHH
Confidence 99999999999999999999999999999999999999999998766667899998888777889999999999999999
Q ss_pred HHHhcChHHHHHHHHhcC
Q 001917 979 YFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 979 ~~~aGGiL~yv~rk~~~~ 996 (996)
||++|||||||+|++++|
T Consensus 919 ~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 919 YFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999999875
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.3e-267 Score=2345.74 Aligned_cols=895 Identities=69% Similarity=1.142 Sum_probs=851.7
Q ss_pred HHHHHhhhhccCCchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeeeccccccccCCccccHHHHHHHHhccc
Q 001917 91 RLERAFATMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWEN 170 (996)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~ 170 (996)
.|.|.+++. .++|....++|+ ++ +.|+||+|+++...+++||||||||||||+||||||..|+++++++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 345555553 378854337787 43 4799999999876689999999999999999999999999999999999987
Q ss_pred CCCCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHH
Q 001917 171 SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQ 250 (996)
Q Consensus 171 ~~~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~ 250 (996)
....+.||+|+||||+||||||+|+++|||||||+++++|+||.+|||.+||||+|||+||+++++..++..+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHH
Q 001917 251 RNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 330 (996)
Q Consensus 251 rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea 330 (996)
||.|||+||||++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccc
Q 001917 331 AMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMG 410 (996)
Q Consensus 331 ~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g 410 (996)
+|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchh
Q 001917 411 FFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKAD 490 (996)
Q Consensus 411 ~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~ 490 (996)
|||+|++|++||+.|||++++++++++|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999889999999999999963 5789999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCee
Q 001917 491 WHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK 570 (996)
Q Consensus 491 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk 570 (996)
|.+++....+.+++++.+++..+..++.++|++++|.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877655444555553333222234456889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCc
Q 001917 571 TSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA 650 (996)
Q Consensus 571 ~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~ 650 (996)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|.+||+++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccC
Q 001917 651 NYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV 730 (996)
Q Consensus 651 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 730 (996)
||||||+|||||||+|+|+||+++||||+|++|++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcc
Q 001917 731 PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 810 (996)
Q Consensus 731 ~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fns 810 (996)
+++++|+||++||||++||||++++.+++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.++||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhcc
Q 001917 811 YGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (996)
Q Consensus 811 ygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~ 890 (996)
|||||||||||+||||+|+|++|+|+ |.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~ 794 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGP 794 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEec
Q 001917 891 MLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVR 970 (996)
Q Consensus 891 ~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~ 970 (996)
++||||||||+||+||||+||+|||||||+|.++++++.++++++++++|++... .++||++++++..+|++|+++++
T Consensus 795 ~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r 872 (898)
T PTZ00092 795 YLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILR 872 (898)
T ss_pred HHhCCcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999986321 58999999987788999999999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhcC
Q 001917 971 FDTEVELAYFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 971 ~~t~~e~~~~~aGGiL~yv~rk~~~~ 996 (996)
++|+.|++||++|||||||+|+++++
T Consensus 873 ~dt~~e~~y~~~GGiL~yv~~~~~~~ 898 (898)
T PTZ00092 873 IDTEVEVEYFKHGGILQYVLRKLVKG 898 (898)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999999999999763
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=4.6e-265 Score=2319.80 Aligned_cols=864 Identities=64% Similarity=1.052 Sum_probs=826.4
Q ss_pred eeeEeecCCCC--CCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceEeeccceeeeccCCchhHHH
Q 001917 120 FGKFYSLPALN--DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVV 197 (996)
Q Consensus 120 ~~~~~~l~~~~--~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei~~~pdrvl~qD~TG~pa~v 197 (996)
.|+||+|.+|+ ..++++|||||||||||+||||||+.+++++|++|++|........||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 58999999985 3579999999999999999999999999999999999986666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 001917 198 DLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSG 277 (996)
Q Consensus 198 dlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~G 277 (996)
|||||||+++++|+||.+|||.+||+|+|||+||++.++..+++..|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccceeeecCC----CcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEeccc
Q 001917 278 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 353 (996)
Q Consensus 278 I~HQV~lE~la~vv~~~~----G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L 353 (996)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHH
Q 001917 354 HNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA 433 (996)
Q Consensus 354 ~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~ 433 (996)
++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCCCCC-CCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccc
Q 001917 434 MVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQE 512 (996)
Q Consensus 434 ~~~~y~k~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~ 512 (996)
++++|.|+|++|+ +| ++|.|+++++||||+|||+||||++|||++||+++++.|.+++..+.+.+|+.+....
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~-- 395 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEP-- 395 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhhh--
Confidence 9999999999995 34 6899999999999999999999999999999999999988877654433444331111
Q ss_pred cceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHH
Q 001917 513 KVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKY 592 (996)
Q Consensus 513 ~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 592 (996)
....++|++..|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 396 --~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 396 --LKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred --hheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 111256888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCC
Q 001917 593 LNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 672 (996)
Q Consensus 593 L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 672 (996)
|+++||+|++||||+||||+|+++++++++|.+|+++++||||+||||+|||||.+++||||||+|||||||+|+|+||+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCC
Q 001917 673 DKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (996)
Q Consensus 673 ~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~ 752 (996)
++||+|+|++|++|||+||||+.+||++++.+.++++||.+.|.+++.+++.|++|++++++.|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhh
Q 001917 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (996)
Q Consensus 753 ~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~ 832 (996)
+++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|++++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcc
Q 001917 833 NKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLV 912 (996)
Q Consensus 833 N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlv 912 (996)
|+|++|.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~ 793 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLV 793 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChHHH
Q 001917 913 GMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT--DSG--KSFTCTVRFDTEVELAYFDHGGILPF 988 (996)
Q Consensus 913 n~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL~y 988 (996)
|||||||+|++++++++|+|+|+|+|+|.... +++||++++|+. .+| ++|.+++++||+.|++||+|||||||
T Consensus 794 ~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~y 870 (876)
T TIGR01341 794 GMGVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQY 870 (876)
T ss_pred hcCcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999995332 579999888763 577 78999999999999999999999999
Q ss_pred HHHHHh
Q 001917 989 VIRNLI 994 (996)
Q Consensus 989 v~rk~~ 994 (996)
|+|+++
T Consensus 871 v~r~~~ 876 (876)
T TIGR01341 871 VLRKFL 876 (876)
T ss_pred HHHhhC
Confidence 999974
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.3e-263 Score=2313.95 Aligned_cols=876 Identities=58% Similarity=0.970 Sum_probs=831.9
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCCC---CCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceE
Q 001917 102 EHPFKEILTALPKPGGGEFGKFYSLPALND---PRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (996)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei 178 (996)
.++|. ..++|...+ +.|+||+|.+++. .+++||||||||||||+||||||+.|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGG--KTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCC--eeEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 357788765 3799999999852 47999999999999999999999999999999999998766667899
Q ss_pred eeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhh
Q 001917 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (996)
Q Consensus 179 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~f 258 (996)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||++||||+||+|.++..+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC----CCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHcc
Q 001917 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 334 (996)
Q Consensus 259 lkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~----~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg 334 (996)
||||+++|+||+|+|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccC
Q 001917 335 QPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPV 414 (996)
Q Consensus 335 ~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 414 (996)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||++||||||||++|||||+||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhh
Q 001917 415 DHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSC 494 (996)
Q Consensus 415 De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~ 494 (996)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999974 58899999999999999999999999999999999999998887
Q ss_pred hcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEE
Q 001917 495 LDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574 (996)
Q Consensus 495 ~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~ 574 (996)
+..+.+.+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64332222221100 02345578899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceec
Q 001917 575 PGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLA 654 (996)
Q Consensus 575 PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLA 654 (996)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||+++++|||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred ChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCC
Q 001917 655 SPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASK 734 (996)
Q Consensus 655 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 734 (996)
||++||||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.++++||.+.|++++.+++.|++|+++.++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccC
Q 001917 735 LYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSR 814 (996)
Q Consensus 735 ~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsr 814 (996)
+|+||++||||++||||+++..+++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccc
Q 001917 815 RGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLV 894 (996)
Q Consensus 815 RgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lG 894 (996)
|||||||+||||+|+|++|+|++|.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEE--cCCC--eEEEEEec
Q 001917 895 IKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVR 970 (996)
Q Consensus 895 VrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~ 970 (996)
|+||||+||+||||+||+|||||||+|+++.++++|+++++|+++|+.... .++||++++|+ ..+| .+|+++++
T Consensus 787 v~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r 864 (889)
T PRK12881 787 VKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCR 864 (889)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999985542 58899988865 3566 67888999
Q ss_pred CCCHHHHHHHHhcChHHHHHHHHhc
Q 001917 971 FDTEVELAYFDHGGILPFVIRNLIK 995 (996)
Q Consensus 971 ~~t~~e~~~~~aGGiL~yv~rk~~~ 995 (996)
++|+.|++||++|||||||++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=9.7e-263 Score=2302.14 Aligned_cols=875 Identities=61% Similarity=1.029 Sum_probs=834.5
Q ss_pred CCchhhhcccccCCCCCceeeEeecCCCC---CCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceE
Q 001917 102 EHPFKEILTALPKPGGGEFGKFYSLPALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (996)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei 178 (996)
.++|.. +++|...+ +.|+||+|.+|. ..++++|||||||||||+||||||+.+++++|++|++|.....++.||
T Consensus 4 ~~~~~~-~~~~~~~~--~~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei 80 (888)
T PRK09277 4 TDSFKA-RKTLEVGG--KSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREI 80 (888)
T ss_pred CCcccc-cceeeeCC--eeEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCcee
Confidence 366743 56777765 379999998874 347999999999999999999999999999999999998766667899
Q ss_pred eeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhh
Q 001917 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (996)
Q Consensus 179 ~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~f 258 (996)
+|+||||+|||+||+|+++|||||||+++++|+||.+|||.+||+|||||+||++.++..++..+|+.+||+||.|||.|
T Consensus 81 ~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~f 160 (888)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQF 160 (888)
T ss_pred eeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC-CC--cccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccC
Q 001917 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 335 (996)
Q Consensus 259 lkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~-~G--~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~ 335 (996)
|||++++|.|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+||
T Consensus 161 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~ 240 (888)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 (888)
T ss_pred HHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcC
Confidence 999999999999999999999999999999999977 78 999999999999999999999999999999999999999
Q ss_pred ceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCC
Q 001917 336 PMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD 415 (996)
Q Consensus 336 ~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 415 (996)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (888)
T PRK09277 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPID 320 (888)
T ss_pred cEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhh
Q 001917 416 HVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCL 495 (996)
Q Consensus 416 e~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~ 495 (996)
++|++||+.|||++++++++|+|.|++++|+ .+|++|.|+++++||||+|||+||||++|||++||+|++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~---~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 321 EETLDYLRLTGRDEEQVALVEAYAKAQGLWR---DPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred hhHHHHHHhcCCChHHHHHHHHHHHHHhhhc---cCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 9999999999999999999999999999996 2588999999999999999999999999999999999999877653
Q ss_pred cccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEc
Q 001917 496 DNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAP 575 (996)
Q Consensus 496 ~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~P 575 (996)
.. +.+++. .+..++|....|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~~---------~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGFG---------LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhhh---------hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 122221 2234678888999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecC
Q 001917 576 GSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLAS 655 (996)
Q Consensus 576 GS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLAS 655 (996)
||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||+++++|+|+||||+|||||..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCc
Q 001917 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKL 735 (996)
Q Consensus 656 P~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 735 (996)
|++||||||+|+|+||+++||+|++++|++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|+++++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCC
Q 001917 736 YSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRR 815 (996)
Q Consensus 736 ~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrR 815 (996)
|+||++||||++||||++++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||+||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998888788999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccc
Q 001917 816 GNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVI 895 (996)
Q Consensus 816 gN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGV 895 (996)
||||||+||||+|+|++|+|++|.+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||+|++++|||
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEE--cCCC--eEEEEEecC
Q 001917 896 KAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRF 971 (996)
Q Consensus 896 rAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~~ 971 (996)
+||||+||+||||+||+|||||||+|++++++++|+|+++|+|+|+... +++||++++|+ ..+| ++|++++++
T Consensus 787 ~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~ 863 (888)
T PRK09277 787 KAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRI 863 (888)
T ss_pred cEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEec
Confidence 9999999999999999999999999999999999999999999996433 47999988874 3566 789999999
Q ss_pred CCHHHHHHHHhcChHHHHHHHHhcC
Q 001917 972 DTEVELAYFDHGGILPFVIRNLIKQ 996 (996)
Q Consensus 972 ~t~~e~~~~~aGGiL~yv~rk~~~~ 996 (996)
||+.|++||++|||||||+|+++++
T Consensus 864 dt~~Ei~y~~~GGiL~yv~r~~~~~ 888 (888)
T PRK09277 864 DTAVEVDYYRNGGILQYVLRDLLAS 888 (888)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999999999864
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.9e-258 Score=2255.66 Aligned_cols=834 Identities=45% Similarity=0.784 Sum_probs=794.6
Q ss_pred eeeEeecC-CCC---CCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceEeeccceeeeccCCchhH
Q 001917 120 FGKFYSLP-ALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPA 195 (996)
Q Consensus 120 ~~~~~~l~-~~~---~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei~~~pdrvl~qD~TG~pa 195 (996)
.|+||+|. +|. ..+++||||||||||||+||||||+.++++ +++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 59999996 664 347999999999999999999999999999 9999999 23579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc-cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 001917 196 VVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP 274 (996)
Q Consensus 196 ~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~-~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~pp 274 (996)
++|||+|||+++++|+||++|||.+||+||||||||+|.++ +++|+.+|+.+||+||.|||+|||||+++|+|++||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccC
Q 001917 275 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLH 354 (996)
Q Consensus 275 G~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~ 354 (996)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHH
Q 001917 355 NGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 434 (996)
Q Consensus 355 ~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~ 434 (996)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccc
Q 001917 435 VEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKV 514 (996)
Q Consensus 435 ~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 514 (996)
+|+|.|++++|++ +|++|+|+++++||||+|||+||+|++|||++|++|++..... .....
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~~---- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAEE---- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------ccccc----
Confidence 9999999999964 4679999999999999999999999999999999998752110 00000
Q ss_pred eeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHH
Q 001917 515 VKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLN 594 (996)
Q Consensus 515 ~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 594 (996)
..+| .+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCC
Q 001917 595 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 674 (996)
Q Consensus 595 ~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 674 (996)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+||+++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCCCC
Q 001917 675 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDM 754 (996)
Q Consensus 675 eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~ 754 (996)
||||+|+||++|||+||||+.+||++++.+.++|+||++.|++++.+++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999988876 788889999999999999999999988
Q ss_pred CCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhh
Q 001917 755 TMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNK 834 (996)
Q Consensus 755 ~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~ 834 (996)
++++.+|++||||+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhh
Q 001917 835 LLN--G--EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSN 910 (996)
Q Consensus 835 l~~--g--~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~N 910 (996)
|++ | .+|++|+|+|+||.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+|
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N 774 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTN 774 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhh
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChH
Q 001917 911 LVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT--DSG--KSFTCTVRFDTEVELAYFDHGGIL 986 (996)
Q Consensus 911 lvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL 986 (996)
|+|||||||+|.+++++++|+|+++|+|+|. . +++||++++++. .+| .+|.+++++||+.|++||+|||||
T Consensus 775 l~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL 849 (858)
T TIGR02333 775 LVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849 (858)
T ss_pred hhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHH
Confidence 9999999999999999999999999999983 2 478999888763 677 689999999999999999999999
Q ss_pred HHHHHHHhc
Q 001917 987 PFVIRNLIK 995 (996)
Q Consensus 987 ~yv~rk~~~ 995 (996)
|||+|+++.
T Consensus 850 ~~v~~~~~~ 858 (858)
T TIGR02333 850 QRFAQDFLE 858 (858)
T ss_pred HHHHHHhhC
Confidence 999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=2e-256 Score=2212.01 Aligned_cols=851 Identities=61% Similarity=1.014 Sum_probs=814.1
Q ss_pred cccccCCCCCceeeEeecCCCCCC-CCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceEeeccceeee
Q 001917 109 LTALPKPGGGEFGKFYSLPALNDP-RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLL 187 (996)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei~~~pdrvl~ 187 (996)
+++|..++ ..|+||+|+++... .+.+||||+|||+||++|++|+ ++++++.++.|........||+|+|+||+|
T Consensus 6 ~~~~~~~~--~~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGG--KTYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCC--ceeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 45677665 48999999999754 7999999999999999999998 899999999998666667799999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccc
Q 001917 188 QDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFH 267 (996)
Q Consensus 188 qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~ 267 (996)
|||||+|+++|+|+||+++.++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecCcEEEE
Q 001917 268 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 347 (996)
Q Consensus 268 ~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV 347 (996)
||+|||||+||||||||||||+||+..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHHhhcCC
Q 001917 348 KLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 427 (996)
Q Consensus 348 ~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR 427 (996)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCC
Q 001917 428 SDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVP 507 (996)
Q Consensus 428 ~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~ 507 (996)
.+++++++|+|+++|+||++. +|++|+|+++++||||+|+|+||||++|||+++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999763 57899999999999999999999999999999999999998876543211
Q ss_pred ccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHc
Q 001917 508 KETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQS 587 (996)
Q Consensus 508 ~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~ 587 (996)
+..+...|+ .+.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|.+||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 011334454 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCc
Q 001917 588 GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (996)
Q Consensus 588 Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (996)
||+++|+++||++++|||||||||||+|++++++.|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCccccCCCCccccC
Q 001917 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHE 747 (996)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~ 747 (996)
|++|+++||+|.+++|++|||+||||+.+||.+.+.+.+.+++|.+.|.++++ |+.++++++++|.|+++||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhcccccc
Q 001917 748 PPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFA 827 (996)
Q Consensus 748 pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~ 827 (996)
||||+++...+.+ |+++|+|+++|||||||||||||+|+++||||+||.++|+++.|||+|||||||||||+||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998776644 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhh
Q 001917 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIH 907 (996)
Q Consensus 828 n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIh 907 (996)
|+|++|+|+++ +|++|+|+|+|+ |||+|++|+++|+|+|||||+|||+|||||||||++++|||+||||+||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIH 772 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIH 772 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHH
Confidence 99999999998 999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEE--cCCC--eEEEEEecCCCHHHHHHHHhc
Q 001917 908 RSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 908 r~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aG 983 (996)
|+||||||||||||++++++++|++++.+.+.|.+.+ .++|+.+++|+ ..|| +++.+.++++|+.|++||+||
T Consensus 773 rSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 773 RSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HhhcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcC
Confidence 9999999999999999999999999999999988765 67888887776 3566 679999999999999999999
Q ss_pred ChHHHHHHHHhc
Q 001917 984 GILPFVIRNLIK 995 (996)
Q Consensus 984 GiL~yv~rk~~~ 995 (996)
|||||++|++++
T Consensus 850 GiL~~v~~~~~~ 861 (861)
T COG1048 850 GILNYVKRDLLK 861 (861)
T ss_pred chHHHHHHHhhC
Confidence 999999999864
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=3e-177 Score=1566.34 Aligned_cols=697 Identities=29% Similarity=0.453 Sum_probs=597.1
Q ss_pred cHHHHHHHHhcccCCC------------C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 001917 158 KKEDVEKIIDWENSAP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL 224 (996)
Q Consensus 158 ~~~~vekil~~~~~~~------------~-~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~l 224 (996)
.++++||||+.+.+.. + +.+|.++|||||+||+||+|+++||++| |.+ + |..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~-~---v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP-Q---VAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC-C---CCCCCeE
Confidence 5789999999987633 2 3579999999999999999999999764 543 3 3445689
Q ss_pred EecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eE
Q 001917 225 VIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 303 (996)
Q Consensus 225 viDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tv 303 (996)
++||++|++.... .++..+++||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 467788999999999999999998 8999999999999999994 56786 69
Q ss_pred eecCCCCcccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEe
Q 001917 304 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFH 383 (996)
Q Consensus 304 VGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~ 383 (996)
|||||||||+||||+|||||||+|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCChhhhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHH-HHHHHHHHccccccCCCCCCCCcccEEEE
Q 001917 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRANKMFVDYNEPQQERVYSSYLE 462 (996)
Q Consensus 384 G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~-~~~~y~k~~~l~~~~~~~D~~a~Y~~~ie 462 (996)
||||++||+++|||||||++|+|||+||||+|++|++||+.+||+++..+ .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875422 2233221 233 4799999999999
Q ss_pred EEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCC
Q 001917 463 LNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNT 542 (996)
Q Consensus 463 iDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~ 542 (996)
||||+|||+||+|++|||++||+|+++++++ .|++ ..|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 0111 14779999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhcc
Q 001917 543 SNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVAST 622 (996)
Q Consensus 543 s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~ 622 (996)
|++|++.||. ++|+|++ ++++|.||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA~-ilk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCAS-IVKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHHH-Hhhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 9999666555 5577754 566788999999999999999999999999999999999999999999986542 1
Q ss_pred ccCCCeeEEeeeccCCCCCCCCCC-ccCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHH
Q 001917 623 ITDNDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEV 701 (996)
Q Consensus 623 i~~~~~~~~~VsS~NRNF~GR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~ 701 (996)
+.+|+.+ ++|||+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+.+.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4557754 6799999999999954 4577999999999999999999999999999 69999999999 8999998775
Q ss_pred hhccCCccchhcccccccCCCCCcccccCC--CCCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccc
Q 001917 702 VQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITT 779 (996)
Q Consensus 702 ~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itT 779 (996)
+| ..++..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||+|||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcCh
Confidence 22 2345667766543 56789999999999999999653 45789999999999999999
Q ss_pred cccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcC--CCCCC--ceeecCCCcccch
Q 001917 780 DHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP--KTVHVPTGEKLSV 855 (996)
Q Consensus 780 DhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~--g~~g~--~t~~~p~ge~~~v 855 (996)
||||||| .||.++ |+|.|++ .|.|.. +.+++ .|.+.|+|+.+++
T Consensus 563 DHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 9999998 589874 4555555 555542 22334 5778889999999
Q ss_pred hhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCC
Q 001917 856 FDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGH 935 (996)
Q Consensus 856 ~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~ 935 (996)
+++|++|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .+
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~--~g 688 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ--PG 688 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888765 45
Q ss_pred eEEEEe-cCCccccCCC---CCeEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHH
Q 001917 936 ERFSID-LPSKISEIRP---GQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFV 989 (996)
Q Consensus 936 e~~~Id-l~~~~~~l~p---g~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv 989 (996)
+++++. +. ++.| ++.+++. ..+| .+|.+++++ |+.|++||++||+|||+
T Consensus 689 d~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 689 DEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred CEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 555553 43 3343 5667653 3455 678888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=3.9e-163 Score=1438.41 Aligned_cols=638 Identities=34% Similarity=0.521 Sum_probs=556.3
Q ss_pred HHHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001917 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (996)
++++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+|.. + +++||+++..
T Consensus 3 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p~~-~-~~~DH~~~~~-- 70 (646)
T PRK07229 3 LTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTELS-V-QYVDHNLLQA-- 70 (646)
T ss_pred cCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCCCe-E-EECCCCCCCC--
Confidence 678999999987643 45579999999999999999999998765 7765 344532 2 4899988865
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCc
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDG 315 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~Ga 315 (996)
+.||.++|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+||
T Consensus 71 -------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~Ga 127 (646)
T PRK07229 71 -------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTAGG 127 (646)
T ss_pred -------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcCCc
Confidence 358999999999999998 8999999999999999996554 23 689999999999999
Q ss_pred ccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001917 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|+||++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||+++|
T Consensus 128 lG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 207 (646)
T PRK07229 128 LGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVPER 207 (646)
T ss_pred ccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccC
Q 001917 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
||||||++|+|||+||||+|++|++||+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 208 ~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~-----------~l----~~D~~a~Y~~~i~iDLs~leP~va~P 272 (646)
T PRK07229 208 ATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV-----------EL----LADPDAEYDEVIEIDLSELEPLIAGP 272 (646)
T ss_pred hhhhccccccCceEEEecCcHHHHHHHHhcCCcccce-----------ec----cCCCCCCeeEEEEEEccceeeeeecC
Confidence 9999999999999999999999999999999876431 11 47899999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001917 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLa 555 (996)
++|||++||+|+++. .|++||||||||||++|+++||++|
T Consensus 273 ~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~iL- 312 (646)
T PRK07229 273 HSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASIL- 312 (646)
T ss_pred CCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHHh-
Confidence 999999999998631 2779999999999999999999999
Q ss_pred HHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001917 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS 635 (996)
+|+||+||||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++ ++ .++++ +|+|
T Consensus 313 -----~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~-~~-------~~~~~---~vst 376 (646)
T PRK07229 313 -----KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQ-AP-------ATGNV---SLRT 376 (646)
T ss_pred -----cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCC-CC-------CCCcE---EEEc
Confidence 89999999999999999999999999999999999999999999999999854 32 23554 7899
Q ss_pred cCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhccc
Q 001917 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTY 715 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y 715 (996)
+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.+
T Consensus 377 ~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~-- 440 (646)
T PRK07229 377 FNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA-- 440 (646)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC--
Confidence 9999999999988899999999999999999999 999999987 8999997 7872 1233444422
Q ss_pred ccccCCCCCcccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHh
Q 001917 716 EAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTA 795 (996)
Q Consensus 716 ~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag 795 (996)
.++.|+.++++ .++||+++|+|+++ .++.++++|+++|||||||||||+|.
T Consensus 441 -----~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~-------- 491 (646)
T PRK07229 441 -----PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA-------- 491 (646)
T ss_pred -----CCccccccccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc--------
Confidence 34567776654 34788888888654 47999999999999999999999974
Q ss_pred hHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCC
Q 001917 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (996)
Q Consensus 796 ~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~ 875 (996)
+||. +|+|+|.|.+++|.+.+ |.+ +.+++..+ ++|||||+
T Consensus 492 ~~l~--------------~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVaG~ 531 (646)
T PRK07229 492 KWLP--------------YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVGGE 531 (646)
T ss_pred chhc--------------cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEecC
Confidence 4765 37899999999998642 322 23466544 78999999
Q ss_pred ccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEE-ecCCccccCCCCCe
Q 001917 876 EYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSI-DLPSKISEIRPGQD 954 (996)
Q Consensus 876 nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~I-dl~~~~~~l~pg~~ 954 (996)
|||||||||||||+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+|+++| ++.+ +.++.+
T Consensus 532 nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~~~~ 605 (646)
T PRK07229 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLPGGP 605 (646)
T ss_pred ccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCCCCe
Confidence 9999999999999999999999999999999999999999999999877777754 56888999 6653 456666
Q ss_pred EEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001917 955 VTVTT-DSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 955 v~v~~-~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~ 994 (996)
|+++. .+|++|.+++++ ++.|++|+++||||||+++++.
T Consensus 606 v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 606 LTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 66643 457899998887 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.1e-160 Score=1415.17 Aligned_cols=643 Identities=32% Similarity=0.480 Sum_probs=549.6
Q ss_pred HHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001917 160 EDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 160 ~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (996)
+++|||++.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|++ +.+++||+++...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 46899999986643 45589999999999999999999998765 443 344554 6789999988752
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 001917 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Ga 315 (996)
.||.++|+|++|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 16789999999999998 568999999999999999655 46 689999999999999
Q ss_pred ccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001917 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+||||++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccC
Q 001917 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
||||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P 269 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEP 269 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCC
Confidence 99999999999999999999999999999998654321 1 47999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001917 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLa 555 (996)
++|||++||+|++. . .|++||||||||||++|+++||++|
T Consensus 270 ~~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il- 309 (658)
T TIGR01342 270 HMPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL- 309 (658)
T ss_pred CCCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh-
Confidence 99999999999763 1 2458999999999999999999999
Q ss_pred HHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001917 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS 635 (996)
+|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ . ++++ +|||
T Consensus 310 -----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~-~-------~~~~---~vst 373 (658)
T TIGR01342 310 -----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP-A-------SDGV---SLRS 373 (658)
T ss_pred -----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC-C-------CCcE---EEEc
Confidence 8999999999999999999999999999999999999999999999999996543 2 2443 7899
Q ss_pred cCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccC-CCChHHHHHHhhccCCccchhcc
Q 001917 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI-WPTTEEIAEVVQSSVLPDMFKST 714 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wPs~~ei~~~~~~~v~~~~f~~~ 714 (996)
+||||+||||+..+.+|||||++||||||+|+| +|+.. ++. .+| |+ ||+.++ |+.|...
T Consensus 374 ~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~ 433 (658)
T TIGR01342 374 FNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGG 433 (658)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhccc
Confidence 999999999998888999999999999999999 45552 332 234 44 886652 4556555
Q ss_pred cccccCCCCCcccccC---CCCCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCC
Q 001917 715 YEAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKD 791 (996)
Q Consensus 715 y~~i~~~~~~w~~l~~---~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~ 791 (996)
|.+++ |+.++. ++.+++. ++||++||+|++++ .+|++ |+++++|||||||||+|||.+
T Consensus 434 ~~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~--- 494 (658)
T TIGR01342 434 YDAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD--- 494 (658)
T ss_pred ccccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc---
Confidence 55443 766654 3344443 89999999998774 46777 999999999999999999752
Q ss_pred ChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEE
Q 001917 792 SPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTII 871 (996)
Q Consensus 792 spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~II 871 (996)
||.+ |+|.+.+.+.+|... +.+ +.+++++|++.+.++||
T Consensus 495 -----~l~~--------------r~~~~~l~~~~~~~~-------------------~p~---f~~~~~~~~~~~~~~ii 533 (658)
T TIGR01342 495 -----ILKF--------------RSNIEAISEFTLHRI-------------------DDE---FAERAKAADEKGKAGII 533 (658)
T ss_pred -----cccc--------------CCCHHHHhhheeeCC-------------------Cch---HHHHhhcccccCCceEE
Confidence 4421 678888888888542 122 23678899999999999
Q ss_pred EeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEe--cCCccccC
Q 001917 872 LAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSID--LPSKISEI 949 (996)
Q Consensus 872 VAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Id--l~~~~~~l 949 (996)
|||+||||||||||||+++++|||+||||+||+||||+||+|+|||||+|+++++++.+. .+++++|+ +.+ .+
T Consensus 534 VaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~--~Gd~l~id~~l~~---~~ 608 (658)
T TIGR01342 534 IAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFE--LGDDIEIPDDLAA---AL 608 (658)
T ss_pred EcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhC--CCCEEEECchhhh---hc
Confidence 999999999999999999999999999999999999999999999999999888888764 36778887 554 47
Q ss_pred CCCCeEEEE-cCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHhc
Q 001917 950 RPGQDVTVT-TDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 995 (996)
Q Consensus 950 ~pg~~v~v~-~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~~ 995 (996)
+||+..++. ..+|.++.+...+ ++.|++|+++||||||+++|..+
T Consensus 609 ~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 609 ADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred CCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 888654443 4567666665433 89999999999999999998653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.2e-142 Score=1260.10 Aligned_cols=662 Identities=25% Similarity=0.357 Sum_probs=502.4
Q ss_pred HHHHHHHHhccc-----CC--CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001917 159 KEDVEKIIDWEN-----SA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 159 ~~~vekil~~~~-----~~--~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 231 (996)
++.+|||++.+. +. ..+.+|.++||++|+||.|+++++ +|. ++|.+ ..++|+. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 578899999886 22 145678999999999999999754 342 35764 5778865 6789999999
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001917 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
..... .+..++..++|+| .| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~~--~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSDK--NLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCHH--HHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 87532 2333333443433 22 578899999999999999 8999996 579999999
Q ss_pred cccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEec--CccC
Q 001917 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHG--DGMG 388 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G--~Gv~ 388 (996)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccCcccCcccccccCChhHHHHHhhcCCCch--------hHHHHHHHHH---HccccccCCCCCCCCcc
Q 001917 389 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAMVEGYLR---ANKMFVDYNEPQQERVY 457 (996)
Q Consensus 389 ~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~--------~~~~~~~y~k---~~~l~~~~~~~D~~a~Y 457 (996)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999876311 0011122211 011111 2368999999
Q ss_pred cEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEee
Q 001917 458 SSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAIT 537 (996)
Q Consensus 458 ~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~Ig 537 (996)
+++++||||+|+|+||+|++|++++|++++... + -.|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------------------------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------------------------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C-------------------------ceeeeEEEe
Confidence 999999999999999999999999999987420 1 136699999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCC
Q 001917 538 SCTNTSNPSVMLGAGLVAKKACELG---LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD 614 (996)
Q Consensus 538 SCTN~s~~dl~~AA~lLak~A~~kG---~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~ 614 (996)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.+|||.|.+|||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7999999999999999999999999999999999999999999999999988
Q ss_pred CChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCC
Q 001917 615 LDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 694 (996)
Q Consensus 615 l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs 694 (996)
+.++ +++ +|+|+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +-||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 7544 554 68999999999999888889999999999999999995 4432210 0 00221
Q ss_pred h--H---HHHHHhhccCCccchhcccccc---cCCCCCcccccCCCCCccccCCCCccccC--CCCCCCCCCCCCCCCCc
Q 001917 695 T--E---EIAEVVQSSVLPDMFKSTYEAI---TKGNPTWNQLSVPASKLYSWDPNSTYIHE--PPYFKDMTMDPPGAHGV 764 (996)
Q Consensus 695 ~--~---ei~~~~~~~v~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~Wd~~styi~~--pp~f~~~~~~~~~~~~i 764 (996)
. . .+.......++.+++...-..+ ....+.-.+.+.|.. .-+.+ .|-+++ +.+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPAQ---------EESEQGLTEILEG-------FPEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhccccccccc---------chhccCCCCcCCC-------CCce
Confidence 0 0 0000000111222221110000 000000011111111 01111 222222 2334
Q ss_pred ccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCce
Q 001917 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (996)
Q Consensus 765 ~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t 844 (996)
...+++++.|||||||||+|+ +||....+ ..|.|.+..|.+.+
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~-------------~~~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPG----------KYTYQDDV-------------PKEKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccch----------hhcccCCC-------------CHHHHHHhhccCCC--------------
Confidence 445899999999999999998 78742112 23466777777543
Q ss_pred eecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCcccccccccc
Q 001917 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAG 924 (996)
Q Consensus 845 ~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~ 924 (996)
|+ .+.+++. +.|||||+|||||||||||+++++.+||+||||+||+|||+||++|+|||||+|++-
T Consensus 574 ---p~--------f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~~ 639 (712)
T TIGR00139 574 ---AE--------FRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPAL 639 (712)
T ss_pred ---cc--------hhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchhH
Confidence 11 1234443 479999999999999999999999999999999999999999999999999999852
Q ss_pred chhhhcc---------CC--CCeEEEEecCCccccCCCCCeEEEEcCC----CeEEEEEecCCCHHHHHHHHhcChHHHH
Q 001917 925 EDADSLG---------LT--GHERFSIDLPSKISEIRPGQDVTVTTDS----GKSFTCTVRFDTEVELAYFDHGGILPFV 989 (996)
Q Consensus 925 ~~~~~l~---------l~--g~e~~~Idl~~~~~~l~pg~~v~v~~~~----G~~f~~~~~~~t~~e~~~~~aGGiL~yv 989 (996)
.+.+. ++ .|++++||+..+ .|++ +.+ ++++..++...+++.++++.+|||++|+
T Consensus 640 --~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~~~~ 708 (712)
T TIGR00139 640 --IKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLEGWV 708 (712)
T ss_pred --HHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHHHHH
Confidence 22221 22 577889988752 4544 322 2334444444588999999999999999
Q ss_pred HHHH
Q 001917 990 IRNL 993 (996)
Q Consensus 990 ~rk~ 993 (996)
++++
T Consensus 709 k~~~ 712 (712)
T TIGR00139 709 KNAI 712 (712)
T ss_pred HhcC
Confidence 9874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=2.9e-140 Score=1245.32 Aligned_cols=685 Identities=21% Similarity=0.276 Sum_probs=514.1
Q ss_pred cHHHHHHHHhcccCCCCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 001917 158 KKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (996)
Q Consensus 158 ~~~~vekil~~~~~~~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (996)
+++++||||+.+.+...+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||+++....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 46789999999977655667999999999999999988776643 5874 44 4 578999999999875443
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcc
Q 001917 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 316 (996)
Q Consensus 238 ~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Gal 316 (996)
..+..++..++|+| +| ++.|+|||+||||||++|+| +.| +++|||||||| +|||
T Consensus 103 ~n~~~~~~~~~~a~-------------k~-Gi~f~~pg~GI~Hqv~~E~~----------a~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 INEDDHVFGLSAAQ-------------KY-GGIFVPPHIAVIHQYMREMM----------AGGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred ccHHHHHHHHHHHH-------------Hc-CCcEECCCCCeECcCchhhc----------cCCCcEEEeeCcCcc-cchh
Confidence 33234444444444 33 45789999999999999954 456 58999999996 8999
Q ss_pred cceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCc-ceeEEEEecCccCCCChhhh
Q 001917 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGV-VGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 317 G~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~-vgk~VEF~G~Gv~~LS~~dR 395 (996)
|+|||||||+|++++|+|+++|+++||+|+|+|+|+|++||+||||||+|++.|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccC
Q 001917 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
||||||++|+|||+||||+|++|++||+.++|.+.+.+ | .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999998764311 1 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCccccc--CccEEEEEeecCCCCCChHHHHHHHH
Q 001917 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~~a~IgSCTN~s~~dl~~AA~l 553 (996)
++|||++||+|+.+++.++++.. +.++..+ ......+++.+ .|. .-.|+|||||||||||++|++.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~---ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLLD---KIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccccc---cccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999888877642 1111111 00011121111 122 23688999999999999999999999
Q ss_pred HHHHHHhcCCccC-CCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001917 554 VAKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 554 Lak~A~~kG~kV~-p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~ 632 (996)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. ++++ +
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---E
Confidence 9 899998 579999999999999999999999999999999999999999998643 32 3554 7
Q ss_pred eeccCCCCCCCCCCccCc-----ceecChHHHHHHHHh-CccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccC
Q 001917 633 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSV 706 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v 706 (996)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +.. .+.+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---Cccc
Confidence 899999999999998886 677778989999998 6996 4432220 11 100 1234
Q ss_pred Cccchh-cccccccCCCCCcccccCCCC-CccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCcc-ccccc
Q 001917 707 LPDMFK-STYEAITKGNPTWNQLSVPAS-KLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSIT-TDHIS 783 (996)
Q Consensus 707 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~-~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~it-TDhIs 783 (996)
+..+|. ..|....... .++++..+ ++-+|+.. +. +.+-...++++++||+|| ||||+
T Consensus 497 ~~~~y~~~~~~~~~~~~---~~~~~~~gPni~~~p~~----------~~-------l~~~~~~kv~~k~~D~itTTD~i~ 556 (751)
T PRK11413 497 DVTPYKNRVYQGFGKGA---TQQPLIYGPNIKDWPEM----------GA-------LTDNILLKVCSKILDPVTTTDELI 556 (751)
T ss_pred CccccccccccCCCCCC---CcceEEeCcCCCCCCCC----------CC-------CCCcEEEEEEEEeCCCCccccccc
Confidence 444443 2332111111 12222222 22234322 22 233445689999999997 99999
Q ss_pred cCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCC--CCceeecCCC---cccchhhh
Q 001917 784 PAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEV--GPKTVHVPTG---EKLSVFDA 858 (996)
Q Consensus 784 PaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~--g~~t~~~p~g---e~~~v~da 858 (996)
||| +||.+ |||-+.+...+|... .|.+..-.. ........+| +...+|+.
T Consensus 557 paG---------~~l~~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~~~~~~~~~~g~~~~~~~~~~~ 611 (751)
T PRK11413 557 PSG---------ETSSY--------------RSNPLGLAEFTLSRR--DPGYVGRSKAVAELENQRLAGNVSELTEVFAR 611 (751)
T ss_pred cCC---------Ccccc--------------ccCHHHHhhhhcccc--ChhhHHHHHHHhhhhhhhhcCCcHHHHHHHHh
Confidence 998 46654 677777777777432 233321000 0000000112 12223322
Q ss_pred HH--------HHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhh-hhhhcccCccccccccccchhhh
Q 001917 859 AM--------KYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERI-HRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 859 A~--------~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RI-hr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
+. .|++.|.++||+ |.||||||||||||.++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 612 ~~~~~~~~~~~~~~~~~~~iv~-~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~---- 686 (751)
T PRK11413 612 IKQIAGQEHIDPLQTEIGSMVY-AVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP---- 686 (751)
T ss_pred hhhccccccccccccCceEEEE-EeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh----
Confidence 21 125566665555 599999999999999999999999999999999 6669999999999998642
Q ss_pred ccCCCCeEEEEecCCccccCC-CCCeE--EEEcCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIR-PGQDV--TVTTDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~-pg~~v--~v~~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk 992 (996)
.+..++.++|+.... .+. ++..+ .+...+| +.+.+.+.-.++.|++|+++||+|||++++
T Consensus 687 -~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~~ 751 (751)
T PRK11413 687 -TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKNR 751 (751)
T ss_pred -hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhcC
Confidence 467788999985532 233 23233 3333444 445555423499999999999999999863
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-132 Score=1121.56 Aligned_cols=687 Identities=30% Similarity=0.479 Sum_probs=565.9
Q ss_pred cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhh
Q 001917 175 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKE 254 (996)
Q Consensus 175 ~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~e 254 (996)
...+.++||||+|||.|..|++++|.. .|... .. +|..+++||.+.+...+..| +.+..+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k-va---vPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK-VA---VPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHHh-------cCccc-cc---CCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 346899999999999999999999853 36543 22 46789999999887665544 5667789999
Q ss_pred hhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCcccceeccCCHHHHHHHHc
Q 001917 255 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 333 (996)
Q Consensus 255 ry~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaea~ml 333 (996)
.|.||..+.+.| |+.||+||+||+|||+|| + ++||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999998776 799999999999999999 4 66886 68999999999999999999999999999999
Q ss_pred cCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCccccccc
Q 001917 334 GQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP 413 (996)
Q Consensus 334 g~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp 413 (996)
++||.++.|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhh
Q 001917 414 VDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHS 493 (996)
Q Consensus 414 ~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~ 493 (996)
.|+.+++||+.|||.+. .+..++|+++ +. .+|++|.|+++|+||||+|+|+|.||++|+-..|++++.+..+
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999874 3445555555 22 5899999999999999999999999999999999999875311
Q ss_pred hhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEE
Q 001917 494 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 573 (996)
Q Consensus 494 ~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v 573 (996)
. +|||.. |..++||||||+||+|+-.+|.+ +++|..+|+ +|.|.+.|
T Consensus 367 -------k------------------n~wp~~-----i~~gligSCTNSsyeDm~raa~i-v~~a~~~gl--k~~v~F~V 413 (778)
T KOG0453|consen 367 -------K------------------NGWPIK-----IKVGLIGSCTNSSYEDMSRAADI-VKQAKGKGL--KPKVPFYV 413 (778)
T ss_pred -------h------------------cCCcee-----eeeeEEEeecCccHHHHHHHHHH-HHHHHhcCC--CCCcceEe
Confidence 0 355543 44689999999999998888876 588877765 56699999
Q ss_pred EcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCcc-Ccce
Q 001917 574 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANY 652 (996)
Q Consensus 574 ~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~-~~~Y 652 (996)
+|||.+|+..+++.|+++.|+++|+.+.+.+||||||++..- -|++||.- +.|+|.||||.|||+.+. ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~------dvk~GE~n-tivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc------cccCCCcC-ceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999998551 13445542 347999999999997665 4579
Q ss_pred ecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCC
Q 001917 653 LASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (996)
Q Consensus 653 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (996)
|+||++|+|+|++|++.++++++-+ .+++|+.+.++. |..+|+.+ +.++|.. ..|+.. +.+.
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g~--~ty~ap----------~~~~ 548 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPGQ--DTYQAP----------PSSS 548 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCCc--ccccCC----------CCCC
Confidence 9999999999999999999999988 678899988775 66666533 2233311 223221 1111
Q ss_pred -CCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCccc
Q 001917 733 -SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSY 811 (996)
Q Consensus 733 -~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsy 811 (996)
.....-||+|+.++....|+. +.-+++++..+|+++..+|||||||-|| .||+++|+-+.-.|.+
T Consensus 549 ~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaG---------pwlkY~Ghl~nisnn~ 614 (778)
T KOG0453|consen 549 SVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAG---------PWLKYRGHLENISNND 614 (778)
T ss_pred CcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCC---------cceeccchhhhcccch
Confidence 123456888988887766653 4457899999999999999999999998 5999988655444432
Q ss_pred ccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccc
Q 001917 812 GSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPM 891 (996)
Q Consensus 812 gsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~ 891 (996)
---.-|-|.|- .|. -.+.-+||...+.+.+..||+.|++||+|++.|||.||||||||..|+
T Consensus 615 ~igain~En~e---------~n~---------~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr 676 (778)
T KOG0453|consen 615 LIGAINKENGE---------ANC---------VKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPR 676 (778)
T ss_pred hhhhcchhhhh---------hhh---------hhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchh
Confidence 00001222221 111 223347888899999999999999999999999999999999999999
Q ss_pred cccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEE--cCCCeEEEEEe
Q 001917 892 LLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSGKSFTCTV 969 (996)
Q Consensus 892 ~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~--~~~G~~f~~~~ 969 (996)
.+|+++||.+||+|||.+||+++|+|||+|.+..+|+.+. ..+.+++. ++.++.||.++++. ..+|++++.++
T Consensus 677 ~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~L~~~~~gkp~t~~vt~~dg~~~~~kl 751 (778)
T KOG0453|consen 677 HLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---GLTRRTPGKPLTVVVTKKDGKEVEIKL 751 (778)
T ss_pred hcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---hhhhhcCCCceeEEEECCCCcEEEEec
Confidence 9999999999999999999999999999999988888763 34444443 23366788876664 45788888888
Q ss_pred cCC-CHHHHHHHHhcChHHHHHH
Q 001917 970 RFD-TEVELAYFDHGGILPFVIR 991 (996)
Q Consensus 970 ~~~-t~~e~~~~~aGGiL~yv~r 991 (996)
.+. +..|++|+++|..|++++.
T Consensus 752 ~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 752 NHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred ccccchhhhHhhhcchHHHHHHH
Confidence 654 8899999999999997765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.6e-129 Score=1085.77 Aligned_cols=400 Identities=77% Similarity=1.209 Sum_probs=388.6
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001917 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
||+|||+||+|+++|||+|||+++++|+||+++||.+|++|++||++|++..+..++..+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeec----CCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEe
Q 001917 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 339 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~----~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l 339 (996)
++|.|++|+|||+||||||++|+||++++. ++|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 4689999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHH
Q 001917 340 VLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419 (996)
Q Consensus 340 ~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~ 419 (996)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccc
Q 001917 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 499 (996)
Q Consensus 420 ~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~ 499 (996)
+++++||||+|||+||+|++|+|++||..
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------- 265 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------- 265 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC-------------
Confidence 56799999999999999999999999821
Q ss_pred cCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHH
Q 001917 500 GFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGV 579 (996)
Q Consensus 500 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~ 579 (996)
+|++||||||||||++|++.||++|+|||++||+||+||||++|+|||++
T Consensus 266 ------------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 266 ------------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred ------------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHH
Q 001917 580 VTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 659 (996)
Q Consensus 580 V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lV 659 (996)
|+++|+++||+++|.++||.|.+|||++|+|+++++.+.++..+.+||+++++|||+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHHhCcc
Q 001917 660 VAYALAGTV 668 (996)
Q Consensus 660 aA~AlaG~I 668 (996)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.1e-120 Score=1037.33 Aligned_cols=452 Identities=25% Similarity=0.369 Sum_probs=396.2
Q ss_pred HHHHHHHHhcccCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc--
Q 001917 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~-~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~-- 235 (996)
++++|||++.+.... .+..+.++|||+++||+|+++++. +||+ +|. ..++|+ ++++++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~~ 72 (465)
T TIGR00170 3 RTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLRQ----AGR--KVRRPQ-KTFATMDHNIPTQNRDF 72 (465)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHHH----cCC--CcCCCc-CEEEEeCCCCCCCCccc
Confidence 678999999987653 455688999999999999999974 3443 463 356665 589999999999763
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~G 135 (465)
T TIGR00170 73 NIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (465)
T ss_pred cccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCccccc
Confidence 46667888999999999999875 2 245679999999999999 899999 68999999999999
Q ss_pred cccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001917 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|+||++||+++
T Consensus 136 alGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~ 215 (465)
T TIGR00170 136 AFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEG 215 (465)
T ss_pred cccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeecc
Q 001917 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++.+|+.. .+|++|.|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~ 290 (465)
T TIGR00170 216 RMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVTW 290 (465)
T ss_pred hhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeecC
Confidence 999999999999999999999999999998876543 36788998998753 5899999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 001917 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~AA~ 552 (996)
|++|+|++||+|+.++...+.+.. ++......++|.|... .+.+++|+|||||||||||++||+.||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~ 360 (465)
T TIGR00170 291 GTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAA 360 (465)
T ss_pred CCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999877655433211 1111112333433322 3678899999999999999999999999
Q ss_pred HHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001917 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~ 632 (996)
+| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++ +
T Consensus 361 vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~ 424 (465)
T TIGR00170 361 VI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER---C 424 (465)
T ss_pred Hh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---E
Confidence 98 9999999999999999999999999999999999999999999999999999988655 444 5
Q ss_pred eeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 425 isTsNRNF~GR~G~~~-~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 425 ASTSNRNFEGRQGRGG-RTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCceec
Confidence 6899999999999854 67999999999999999995
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=5.8e-120 Score=1035.02 Aligned_cols=453 Identities=27% Similarity=0.391 Sum_probs=401.2
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001917 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (996)
.++++|||++.+.... ++.+|.++|||+++||+||++++.+|++| |. ..+||+++ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4689999999987643 34489999999999999999999988653 53 47899875 58999999998732
Q ss_pred ---cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcc
Q 001917 237 ---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 312 (996)
Q Consensus 237 ---~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~ 312 (996)
..++...|+.+++++|.+||.+ .| +++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------RL--FDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3346678889999999998864 12 45678999999999999 8999997 69999999999
Q ss_pred cCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCCh
Q 001917 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (996)
Q Consensus 313 ~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~ 392 (996)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeee
Q 001917 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (996)
Q Consensus 393 ~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~V 472 (996)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.++++.|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788888888653 58999999999999999999999
Q ss_pred ccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHH
Q 001917 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 550 (996)
Q Consensus 473 AgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~A 550 (996)
|+|++|+|++||+|+.+++.++++.. ++......++|++... .+.+..|+|||||||||||+||+++|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999999888766532 0111112344544332 26678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeE
Q 001917 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (996)
Q Consensus 551 A~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~ 630 (996)
|++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|+++++.++ ||+
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999887544 554
Q ss_pred EeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 631 ~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 6899999999999995 456999999999999999995
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.5e-119 Score=1031.61 Aligned_cols=452 Identities=27% Similarity=0.370 Sum_probs=399.1
Q ss_pred HHHHHHHHhcccCCC-CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc--
Q 001917 159 KEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT-- 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~-~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~-- 235 (996)
++++|||++.+.... .+..+.+++||+++||.||++++..| + ++|. ..++|+. +.+++||++|++..
T Consensus 3 ~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~----~~g~--~v~~p~~-~~~~~DH~v~~~~~~~ 72 (466)
T PRK05478 3 KTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL---R----LAGR--KVRRPDL-TFATMDHNVPTTDRDL 72 (466)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH---H----HcCC--CccCCCC-eEEEcCCCCCCCcccc
Confidence 678999999997654 45568899999999999999997543 3 3464 4678874 77899999999975
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+..++...|+.+++++|.+||.+. .+++.+||+||||||++| +|+++| +++|||||||||+|
T Consensus 73 ~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~G 135 (466)
T PRK05478 73 PIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTHG 135 (466)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCccccc
Confidence 466777889999999999999772 245578999999999999 899999 68999999999999
Q ss_pred cccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001917 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+||||++||+++
T Consensus 136 alGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~ 215 (466)
T PRK05478 136 AFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEG 215 (466)
T ss_pred hhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeecc
Q 001917 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++++|+.. .+|++|+|+++++||||+|||+||+
T Consensus 216 R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~ 290 (466)
T PRK05478 216 RMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTW 290 (466)
T ss_pred HhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeecC
Confidence 99999999999999999999999999999554332 477899999999754 5799999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcc--cccCccEEEEEeecCCCCCChHHHHHHH
Q 001917 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~AA~ 552 (996)
|++|||++||+|+.++++++++.+. +.......+|++... .+.+++|+|||||||||||++|+++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ 360 (466)
T PRK05478 291 GTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAA 360 (466)
T ss_pred CCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHH
Confidence 9999999999999999888776431 111112334443221 2678899999999999999999999999
Q ss_pred HHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEe
Q 001917 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~ 632 (996)
+| ||+||+||||++|+|||++|++||+++|++++|.++||.|.+||||+|+|++++.. .+|++ +
T Consensus 361 il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~ 424 (466)
T PRK05478 361 VV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---C 424 (466)
T ss_pred Hh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999986543 35776 6
Q ss_pred eeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 633 VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|+|+||||+||||+..+ +|||||++||||||+|+|+
T Consensus 425 vst~NRNF~GR~G~~~~-~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 425 ASTSNRNFEGRQGKGGR-THLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEecCCCCCCCCCCCCC-EEEcCHHHHHHHHhCCCcC
Confidence 88999999999996654 8999999999999999995
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.9e-120 Score=1041.61 Aligned_cols=457 Identities=40% Similarity=0.627 Sum_probs=368.6
Q ss_pred HHHHHHHhcccCCC----CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001917 160 EDVEKIIDWENSAP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 160 ~~vekil~~~~~~~----~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (996)
|..|||++.+.... .+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 46788988876632 2457999999999999999999999987633 2456664 79999999999876
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccC
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~G 314 (996)
+.. |+..++++|+++|+|++|.++.|....|.|++.||||||++| .|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 778899999999999999998875444444445999999999 8899995 7999999999999
Q ss_pred cccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001917 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeecc
Q 001917 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|||||||++|+||++||||+|++|++||+.++|.++..++.++|.+.+.|| +|++|.|+++++||||+|||+||+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va~ 291 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVAG 291 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE-
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCcccccccc
Confidence 999999999999999999999999999999999987777777777777776 788999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCC--cccccCccEEEEEeecCCCCCChHHHHHHH
Q 001917 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ--PAELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~--~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~ 552 (996)
|++|+|++||+|+.+++.++++. ++. ......++|++. ...+.+++|++||||||||||+||+++||+
T Consensus 292 P~~P~~~~~v~e~~~~~~~~~~~-v~~---------~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~ 361 (465)
T PF00330_consen 292 PHSPDNVVPVSEVAPDFASILDP-VER---------EAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAG 361 (465)
T ss_dssp SSSTTSEEEHHHHHHHHHHHH-----C---------CGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHH
T ss_pred CCCCccccccccccccccccccc-ccc---------cccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHH
Confidence 99999999999999998876553 111 111234556433 357889999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccC-CCeeEE
Q 001917 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD-NDIVAA 631 (996)
Q Consensus 553 lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~-~~~~~~ 631 (996)
+|+++|+ ++|+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 362 il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~--- 430 (465)
T PF00330_consen 362 ILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV--- 430 (465)
T ss_dssp HHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE---
T ss_pred Hhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce---
Confidence 9988876 799999999999999999999999999999999999999999999999995 2211 122 444
Q ss_pred eeeccCCCCCCCCCCccCcceecChHHHHHHHHhC
Q 001917 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 666 (996)
Q Consensus 632 ~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG 666 (996)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 ~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.4e-118 Score=1001.75 Aligned_cols=409 Identities=33% Similarity=0.520 Sum_probs=363.8
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001917 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
|||+||+||+++++||++| |. ++.++|. ++++||++|++.++.++ ...++.+|.++|+|++|..
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 54 4455554 78999999998776544 4567889999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecC
Q 001917 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vP 342 (996)
++| |++|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+||++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 988 8999999999999999993 57886 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHH
Q 001917 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCC
Q 001917 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+.++|+++ .+++++|. ++.+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99998865 67788886 33443 7899999999999999999999999999999999999864331
Q ss_pred CcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHH
Q 001917 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (996)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~ 582 (996)
.|++ -+|+|||||||||||++|+..|| .++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 14789999999999999965555 66799999999998 89999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCccccccCCCC-CChhhhccccCCCeeEEeeeccCCCCCCCCC-CccCcceecChHHHH
Q 001917 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 660 (996)
Q Consensus 583 ~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~-l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g-p~~~~~YLASP~lVa 660 (996)
||+++||+++|.++||.|.+||||+|+|++++ ..+ +++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~~-------~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIK-------KGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCcccC-------CCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999975 222 23321 368999999999994 445669999999999
Q ss_pred HHHHhCcc
Q 001917 661 AYALAGTV 668 (996)
Q Consensus 661 A~AlaG~I 668 (996)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=5.2e-114 Score=964.77 Aligned_cols=380 Identities=27% Similarity=0.429 Sum_probs=343.4
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001917 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
|+++||+||++++. +||+ +|.+ ..+||++ +++++||++|++ +....|+.+++.+|.+||.+
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~gi----- 61 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFGI----- 61 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhCc-----
Confidence 68999999999974 3444 4542 3556654 689999999998 34456777777887776542
Q ss_pred cccccceeeCC-CCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeec
Q 001917 264 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (996)
Q Consensus 264 ~~f~~~~v~pp-G~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~v 341 (996)
+++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 62 ------~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 62 ------NFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred ------ccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 34556 89999999999 788889 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHH
Q 001917 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (996)
Q Consensus 342 PevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 421 (996)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+||+|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccC
Q 001917 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 422 L~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
|+.++|+.. + .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999987631 1 22 47999999999999999999999999999999999998630
Q ss_pred CCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHH
Q 001917 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
.|+|||||||||||++|+++||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHH
Q 001917 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
++|+++||+++|+++||.|.+|||++|+|+++++. .+||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987764 45675 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 001917 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3.3e-113 Score=964.12 Aligned_cols=406 Identities=28% Similarity=0.441 Sum_probs=362.7
Q ss_pred HHHHHHHhcccCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 001917 160 EDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (996)
Q Consensus 160 ~~vekil~~~~~~~--~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (996)
+++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++|.+ ..+||+. +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGID-KVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-cCCCCCc-EEEEcCCCCCCCChh-
Confidence 46899999987642 455688999999999999999987654 45653 5778875 788999999988643
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcc
Q 001917 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 316 (996)
Q Consensus 238 ~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Gal 316 (996)
.+..++..++|.| ++++. +|++||+|||||+++| +|++.| +++|||||||||+|||
T Consensus 71 -~a~~~~~~r~fa~--------~~gi~-----~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Gal 127 (412)
T TIGR01343 71 -AAEMQKLAREFVK--------KTGIK-----HFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGAL 127 (412)
T ss_pred -HHHHHHHHHHHHH--------HcCCc-----eeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCch
Confidence 3446666666666 33332 2689999999999999 899999 6899999999999999
Q ss_pred cceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhh
Q 001917 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRA 396 (996)
Q Consensus 317 G~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRa 396 (996)
|+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+||||++||+++|+
T Consensus 128 Ga~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ 207 (412)
T TIGR01343 128 GAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEERM 207 (412)
T ss_pred hheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCC
Q 001917 397 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPK 476 (996)
Q Consensus 397 TIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~ 476 (996)
|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|+
T Consensus 208 ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P~ 271 (412)
T TIGR01343 208 TLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAPH 271 (412)
T ss_pred hhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecCC
Confidence 99999999999999999999999999998765311 12 579999999999999999999999999
Q ss_pred CCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHH
Q 001917 477 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 556 (996)
Q Consensus 477 ~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak 556 (996)
+|+|++||+|+.. . .|+|||||||||||++|+++||++|
T Consensus 272 ~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il-- 310 (412)
T TIGR01343 272 NVDNVHPVSEVEG--------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL-- 310 (412)
T ss_pred CCCcEEEhHHhCC--------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH--
Confidence 9999999999763 1 2669999999999999999999999
Q ss_pred HHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeecc
Q 001917 557 KACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSG 636 (996)
Q Consensus 557 ~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~ 636 (996)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+++ .+|++ +|+|+
T Consensus 311 ----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT~ 376 (412)
T TIGR01343 311 ----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CISTS 376 (412)
T ss_pred ----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEec
Confidence 89999999999999999999999999999999999999999999999999975543 33565 68999
Q ss_pred CCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 637 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 637 NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||||+||||+....+|||||++||||||+|+|+
T Consensus 377 NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 377 NRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 999999999888889999999999999999995
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=9.7e-113 Score=960.30 Aligned_cols=405 Identities=28% Similarity=0.408 Sum_probs=363.6
Q ss_pred HHHHHHHHhcccCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001917 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (996)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++| .++++|+. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 468999999987643 455688999999999999999987654 456 56788886 788999999998643
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 001917 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Ga 315 (996)
.+..++..++|.| ++ ++++++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~--------~~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK--------EH------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH--------Hc------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3334455555544 22 466789999999999999 899999 579999999999999
Q ss_pred ccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhh
Q 001917 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (996)
Q Consensus 316 lG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dR 395 (996)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+||++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccC
Q 001917 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (996)
Q Consensus 396 aTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP 475 (996)
||||||++|+||++||||+|++|++||+.++|.+. ..| .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------~~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------RIL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------ccc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 99999999999999999999999999999987541 122 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 001917 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (996)
Q Consensus 476 ~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLa 555 (996)
++|+|++|++++.+ . .|++||||||||||++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEG--------------T-------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhcc--------------c-------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 99999999999863 1 2569999999999999999999999
Q ss_pred HHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeec
Q 001917 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (996)
Q Consensus 556 k~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS 635 (996)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+++ .+|++ +|||
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999986653 34665 6899
Q ss_pred cCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
+||||+||||+....+|||||++|||+||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888889999999999999999995
No 24
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=1.6e-112 Score=959.94 Aligned_cols=406 Identities=30% Similarity=0.453 Sum_probs=362.2
Q ss_pred HHHHHHHHhcccCCC--CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 001917 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (996)
++++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++|.+ ..+||+. +.+++||++|+...
T Consensus 3 ~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-~~~~~DH~~p~~~~- 72 (418)
T PRK00402 3 MTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFE-------KIGGD-KVFDPSK-IVIVFDHFVPAKDI- 72 (418)
T ss_pred cCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-ccCCCCc-EEEECCCCCCCCCh-
Confidence 678999999987653 455688999999999999999987654 34654 4678875 78999999999864
Q ss_pred cHHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001917 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 237 ~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~-v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
..+..++..++|.| ++ +++ |+++|+|||||+++| +|++.| +++|||||||||+|
T Consensus 73 -~~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~G 128 (418)
T PRK00402 73 -KSAEQQKILREFAK--------EQ------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTYG 128 (418)
T ss_pred -hhHHHHHHHHHHHH--------Hc------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCccccC
Confidence 33445666666655 22 344 678999999999999 889999 58999999999999
Q ss_pred cccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001917 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~d 394 (996)
|||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++
T Consensus 129 alG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~ 208 (418)
T PRK00402 129 ALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDE 208 (418)
T ss_pred ccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeecc
Q 001917 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISG 474 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAg 474 (996)
|||||||++|+||++||||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||+
T Consensus 209 R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va~ 272 (418)
T PRK00402 209 RMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVAA 272 (418)
T ss_pred HhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeeec
Confidence 999999999999999999999999999998754321 11 14799999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHH
Q 001917 475 PKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLV 554 (996)
Q Consensus 475 P~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lL 554 (996)
|++|+|++|++|+++ . .|+|||||||||||++|+++||++|
T Consensus 273 P~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~eDl~~aA~il 313 (418)
T PRK00402 273 PHLPDNVKPVSEVEG--------------T-------------------------KVDQVFIGSCTNGRLEDLRIAAEIL 313 (418)
T ss_pred CCCccceeEchhhCC--------------c-------------------------eeeEEEEecCCCCChHHHHHHHHHH
Confidence 999999999999763 0 2669999999999999999999999
Q ss_pred HHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeee
Q 001917 555 AKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVL 634 (996)
Q Consensus 555 ak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~Vs 634 (996)
||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++.+.++ +|++ +||
T Consensus 314 ------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vs 377 (418)
T PRK00402 314 ------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CLS 377 (418)
T ss_pred ------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEE
Confidence 999999999999999999999999999999999999999999999999998655433 3565 689
Q ss_pred ccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 635 SGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 635 S~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|+||||+||||+....+|||||++||||||+|+|+
T Consensus 378 T~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 378 TTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred ecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 99999999999888889999999999999999995
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1e-112 Score=951.90 Aligned_cols=379 Identities=36% Similarity=0.579 Sum_probs=346.2
Q ss_pred ceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhc
Q 001917 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (996)
Q Consensus 183 drvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~ 262 (996)
|++++||.|+++++..| +++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~-------~~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQF-------EAMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHH-------HHcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 78999999999998755 346774 355663 7889999999863 2566788888888
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeec
Q 001917 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (996)
Q Consensus 263 ~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~v 341 (996)
.++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8887 7899999999999999994 5567 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHH
Q 001917 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (996)
Q Consensus 342 PevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~Y 421 (996)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccC
Q 001917 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 422 L~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+..
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 99998865321 11 4799999999999999999999999999999999999763
Q ss_pred CCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHH
Q 001917 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
. +|+|||||||||||++|+++||++| ||+||+||||++|+|||++|+
T Consensus 258 --------------------~-------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 --------------------I-------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred --------------------c-------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 0 3679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHH
Q 001917 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
++|+++||+++|+++||.|.+|||++|+|+++.+ + +|++ +|+|+||||+||||+....+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~-~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP-P-------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC-C-------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997653 2 3565 689999999999998888899999999999
Q ss_pred HHHhCcc
Q 001917 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.3e-111 Score=950.75 Aligned_cols=409 Identities=31% Similarity=0.456 Sum_probs=362.0
Q ss_pred HHHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001917 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (996)
++++|||++.+.+.. .+..|.+++|++|+||.|+++++..| +++|. +..+||+. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f-------~~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAF-------KEYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHH-------HHcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 367999999997643 45568899999999999999987655 34565 45788875 78899999999853
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-cccceeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~-GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (996)
..+..++..++|.| ++++++ |+++|. |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 44556677777777 344433 467785 999999999 999999 5799999999999
Q ss_pred CcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChh
Q 001917 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (996)
Q Consensus 314 GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~ 393 (996)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeec
Q 001917 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 394 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 473 (996)
+|||||||++|+||++||||+|++|++||+.+++++ ++ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765432 11 22 479999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001917 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~l 553 (996)
+|++|+|++|++|+... |. +|++||||||||||++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 11 356899999999999999999999
Q ss_pred HHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEee
Q 001917 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~V 633 (996)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+..+ +||+ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998855433 3554 68
Q ss_pred eccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||+||||+||||+....+|||||++|||+||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999999666779999999999999999995
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-109 Score=910.84 Aligned_cols=410 Identities=29% Similarity=0.454 Sum_probs=361.5
Q ss_pred HHHHHHHHhcccCCC--C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001917 159 KEDVEKIIDWENSAP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~--~-~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (996)
++..|||++.+.+.. . +..+..++|++|+||.|+|.++.- ++++|. ++++|++ +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~-------lr~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEG-------LREAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHH-------HHHhCC--cccCccc-eEEEecCCCCCccH
Confidence 688999999997653 2 234678999999999999998753 345576 5778876 77899999999865
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG-~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (996)
..+ ++.+++.+|.++| ++ ..|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~a-----~~~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KAA-----EQQKELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HHH-----HHHHHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 332 4445555665544 33 3456678 9999999999 999999 5899999999999
Q ss_pred CcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChh
Q 001917 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (996)
Q Consensus 314 GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~ 393 (996)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeec
Q 001917 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 394 dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VA 473 (996)
+|||||||++|+||++|+|+||++|++||+... ++...|+.. .+|+||.|+++++||+|+|||+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 999999999999999999999999999999322 222345443 689999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001917 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~l 553 (996)
||++|+|+++++|+.++. + .|+++|||||||||++||++||.+
T Consensus 275 ~p~~p~nv~~v~e~~~~~--------------i-----------------------~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP--------------I-----------------------KIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc--------------e-----------------------eeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999987421 1 366999999999999999999999
Q ss_pred HHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEee
Q 001917 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~V 633 (996)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|+|.++.++ ||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---Ee
Confidence 9 8999999999999999999999999999999999999999999999999999776554 554 57
Q ss_pred eccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||+||||+||||+..+.+||+||+++||+|++|+|+
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999666778999999999999999995
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=3.1e-104 Score=894.61 Aligned_cols=402 Identities=24% Similarity=0.345 Sum_probs=349.2
Q ss_pred HHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccH
Q 001917 162 VEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSE 238 (996)
Q Consensus 162 vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~ 238 (996)
+||||+.+.+.. .+..|.+++|++++||.||++++..|. ++|. +++||+. +.+++||++|+....
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~-------~~~~--~v~d~~~-~v~~~DH~~p~~~~~-- 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VMQSFCHTAAYPKPV-- 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHH-------HcCC--cccCCcc-EEEEcCCCCCCCCHH--
Confidence 689999987643 455788999999999999999987664 3454 4678875 788999999988653
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCccc
Q 001917 239 NAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLG 317 (996)
Q Consensus 239 ~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG 317 (996)
.+..++..++|.++ + +++|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHH--------c------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 44467777788773 2 356789999999999888 35786 56999999999986
Q ss_pred ceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHH----H--------HHHcCcceeEEEEecC
Q 001917 318 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQ----M--------LRKHGVVGKFVEFHGD 385 (996)
Q Consensus 318 ~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~----~--------Lr~~G~vgk~VEF~G~ 385 (996)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+. . ++.+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 89999999999999999999999999999999999999999999998754 3 33345689999996
Q ss_pred ccCCCChhhhhhhhccCcccCcccccccCChhH-HHHHhhc----------CCCc-----hhHHHHHHHHHHccccccCC
Q 001917 386 GMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDYN 449 (996)
Q Consensus 386 Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T-~~YL~~t----------gR~~-----~~~~~~~~y~k~~~l~~~~~ 449 (996)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ ...+.++.|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3345678888887777
Q ss_pred CCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccC
Q 001917 450 EPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKH 528 (996)
Q Consensus 450 ~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~ 528 (996)
.+|++|.|+++++||||+| ||+||+|++|+|++|++|+.+ .
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~------------------------ 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------K------------------------ 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------C------------------------
Confidence 4799999999999999999 999999999999999999763 1
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCcccc
Q 001917 529 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTC 608 (996)
Q Consensus 529 g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~C 608 (996)
.|+++||||||| +++|++.||.+| ||++++ .||++|+|||++|+++|+++|++++|.++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 245899999999 999999999999 999974 59999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCcc
Q 001917 609 IGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (996)
Q Consensus 609 iG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (996)
+|+.+.+ .+||+ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985443 45776 689999999999999 567899999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=2.2e-103 Score=870.68 Aligned_cols=361 Identities=32% Similarity=0.501 Sum_probs=319.6
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001917 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
.+++||.|+++++. |. ++|. ++.++|+. +.+++||++|+.... .+..++..++|.| |
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak--------~--- 57 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK--------K--- 57 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH--------H---
Confidence 37999999998764 42 3565 46788875 788999999998643 3345555555555 1
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecC
Q 001917 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vP 342 (996)
++++|+|||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 58 ---~gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 58 ---HGIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred ---hCCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 2567899999999999999 8999997 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHH
Q 001917 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCC
Q 001917 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 457999999999999999999999999997420
Q ss_pred CcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CccCCCeeEEEEcCcHHHH
Q 001917 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG-~kV~p~Vk~~v~PGS~~V~ 581 (996)
+ -+|++||||||||||++|++.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ~-------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 N-------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred C-------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 1366999999999999999999999943333332 3499999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHH
Q 001917 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
++|+++||+++|.++||.|.+|||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 9999999999999999999999999999999887543 565 589999999999998888899999999999
Q ss_pred HHHhCcc
Q 001917 662 YALAGTV 668 (996)
Q Consensus 662 ~AlaG~I 668 (996)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=4.1e-99 Score=850.55 Aligned_cols=388 Identities=38% Similarity=0.608 Sum_probs=349.8
Q ss_pred eeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhcc
Q 001917 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (996)
Q Consensus 184 rvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~ 263 (996)
||++||+||++++.+|+. +|.+.+.+||. ++.+++||++|++. .+|.++|+|++|..
T Consensus 1 ~v~~hD~tgp~a~~~~~~-------~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-------LAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHH-------cCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 799999999999987754 45532456665 68999999999863 25666677777777
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecC
Q 001917 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 264 ~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vP 342 (996)
+.|. ++++++|+|||||+++|++ +.| ++++||||||||+||||++|||+|++|++++|++|++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7764 8899999999999999943 456 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHH
Q 001917 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCC
Q 001917 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~ 502 (996)
+.++|++... .+++|.+. + .+|++|.|+++++|||++|||+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999887544 33333332 2 5899999999999999999999999999999999999752
Q ss_pred CcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHH
Q 001917 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (996)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~ 582 (996)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13679999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHH
Q 001917 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (996)
Q Consensus 583 ~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~ 662 (996)
+++++|++++|+++||.|..+||++|+|+++++..+ |++ +|+|+||||+||||+..+.+|||||++||||
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 999999999999999999999999999999887543 554 6899999999999998888999999999999
Q ss_pred HHhCcc
Q 001917 663 ALAGTV 668 (996)
Q Consensus 663 AlaG~I 668 (996)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=5.1e-96 Score=868.29 Aligned_cols=410 Identities=23% Similarity=0.328 Sum_probs=357.1
Q ss_pred cccHHHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 001917 156 QVKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQV 232 (996)
Q Consensus 156 ~~~~~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~ 232 (996)
...++++|||++.+.+.. .+..|..++|.|++||.||++++. .++++|. ..++|+. |.+++||.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~-------~~~~lg~--~~~~~d~-v~~~~dH~~p~ 437 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRD-------ELKDLAC--LGFSADL-VMQSFCHTAAY 437 (835)
T ss_pred CCcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHH-------HHHHcCC--cccCCCc-EEEEccCCCCC
Confidence 345799999999887643 456788999999999999998864 4566676 4677775 67899999998
Q ss_pred CCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCc
Q 001917 233 DVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTT 311 (996)
Q Consensus 233 d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~ 311 (996)
... .++..++..++|.++ + ++.+++||+|||||++ +|+++||+ ++|||||||
T Consensus 438 ~~~--~~a~~~~~lr~Fa~~--------~------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~ 490 (835)
T PRK09238 438 PKP--VDVKTHHTLPDFIMN--------R------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 490 (835)
T ss_pred CCH--HHHHHHHHHHHHHHH--------c------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccC
Confidence 754 455567777777774 2 2345889999999996 35889986 599999999
Q ss_pred ccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHH------------HHcCcceeE
Q 001917 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQML------------RKHGVVGKF 379 (996)
Q Consensus 312 ~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~L------------r~~G~vgk~ 379 (996)
|+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+ +.+|++||+
T Consensus 491 t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~ 567 (835)
T PRK09238 491 FPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 567 (835)
T ss_pred CCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeE
Confidence 9997 7899999999999999999999999999999999999999999999994333 334578999
Q ss_pred EEEecCccCCCChhhhhhhhccCcccCccccccc-CChhHHHHHhhc----------CCC-----chhHHHHHHHHHHcc
Q 001917 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS-----DETVAMVEGYLRANK 443 (996)
Q Consensus 380 VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp-~De~T~~YL~~t----------gR~-----~~~~~~~~~y~k~~~ 443 (996)
|||. ||++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||+ ..+++.+++|++...
T Consensus 568 lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ 645 (835)
T PRK09238 568 LEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPE 645 (835)
T ss_pred EEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhcc
Confidence 9995 6999999999999999999999999999 788889999986 664 235667899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCC
Q 001917 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (996)
Q Consensus 444 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~ 522 (996)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 646 ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~-------------------------------- 689 (835)
T PRK09238 646 LL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------------------------- 689 (835)
T ss_pred cc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC--------------------------------
Confidence 88 5799999999999999999 9999999999999999998631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEec
Q 001917 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 602 (996)
Q Consensus 523 ~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~ 602 (996)
.|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..
T Consensus 690 -------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~ 755 (835)
T PRK09238 690 -------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEM 755 (835)
T ss_pred -------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECC
Confidence 25589999999 9999999999999 999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 603 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 603 ~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
|||++|+||.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 756 pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 756 PGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred CcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 9999999995543 45775 689999999999997 5678999999999999999994
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=6.3e-95 Score=856.42 Aligned_cols=408 Identities=23% Similarity=0.334 Sum_probs=354.8
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 001917 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (996)
Q Consensus 157 ~~~~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (996)
..++.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. .+++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987643 45678899999999999999986544 45554 4677765 678999999876
Q ss_pred CcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCcc
Q 001917 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (996)
Q Consensus 234 ~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~ 312 (996)
. ..++..++..++|.++ + ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~--------~------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHH--------c------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 3456677778888774 2 345688999999999876 468975 6999999999
Q ss_pred cCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHH------------cCcceeEE
Q 001917 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (996)
Q Consensus 313 ~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~------------~G~vgk~V 380 (996)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999644442 45689999
Q ss_pred EEecCccCCCChhhhhhhhccCcccCcccccccCChh-HHHHHhhc----------CCCc-----hhHHHHHHHHHHccc
Q 001917 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (996)
Q Consensus 381 EF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~-T~~YL~~t----------gR~~-----~~~~~~~~y~k~~~l 444 (996)
||. ||++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++...+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999985 6654 356778899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCc
Q 001917 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (996)
Q Consensus 445 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (996)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 5799999999999999999 9999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 001917 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (996)
Q Consensus 524 ~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~ 603 (996)
.|+++|||||| |+.+|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 24589999999 7999999999999 9999998 99999999999999999999999999999999999
Q ss_pred CccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 604 GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
||++|+||.+.+ .+|++ +|||+||||+||||+. ..+|||||++|||+||+|+|+
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCcccC
Confidence 999999996654 34665 6789999999999985 568999999999999999993
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=2e-92 Score=832.58 Aligned_cols=410 Identities=22% Similarity=0.308 Sum_probs=351.8
Q ss_pred cccHHHHHHHHhcccCC----CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001917 156 QVKKEDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 156 ~~~~~~vekil~~~~~~----~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 231 (996)
...++++|||++.+.+. ..+..|..++|.|++||.||++++..| +++|.. .++|+. |.+++||.++
T Consensus 441 ~mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~ef-------kel~~~--~~dpdk-v~~~fDH~ap 510 (938)
T PLN00094 441 PKGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDEL-------KDLACL--GFSADL-VMQSFCHTAA 510 (938)
T ss_pred CCchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhccc--ccCccc-EEEEccCCCC
Confidence 34589999999998754 245678899999999999999986544 454432 334443 6889999988
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001917 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
+... .++..++..++|.++ + ++.+++||+|||||++.| ++.|| +++|+||||
T Consensus 511 ~p~~--~~~~~~~~lr~Fa~~--------~------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT 563 (938)
T PLN00094 511 YPKP--VDVVTHHTLPDFIRN--------R------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHT 563 (938)
T ss_pred CCCH--HHHHHHHHHHHHHHH--------c------CCEEECCCCceecccccc-----------cccCCeEEEeecCCC
Confidence 8754 455667778887773 2 345788999999998754 67886 589999999
Q ss_pred cccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHH------HHHH------HcCccee
Q 001917 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVT------QMLR------KHGVVGK 378 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~------~~Lr------~~G~vgk 378 (996)
|+..|+ ++|.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|+ +.+++||
T Consensus 564 ~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gk 640 (938)
T PLN00094 564 RFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGR 640 (938)
T ss_pred CCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeE
Confidence 987775 558899999999999999999999999999999999999999999997 4443 3346899
Q ss_pred EEEEecCccCCCChhhhhhhhccCcccCcccccccCCh-hHHHHHhh----------cCCC-----chhHHHHHHHHHHc
Q 001917 379 FVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVAMVEGYLRAN 442 (996)
Q Consensus 379 ~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De-~T~~YL~~----------tgR~-----~~~~~~~~~y~k~~ 442 (996)
+||| +||++||+++|||||||++|+||++|+||+|+ .|++||+. +|+. +++++.+++|++..
T Consensus 641 ilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~ 718 (938)
T PLN00094 641 ILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADP 718 (938)
T ss_pred EEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhc
Confidence 9999 77999999999999999999999999999995 68999986 4533 34567889999888
Q ss_pred cccccCCCCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCC
Q 001917 443 KMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 521 (996)
Q Consensus 443 ~l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g 521 (996)
.+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+ .
T Consensus 719 ~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~----------------- 763 (938)
T PLN00094 719 ELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D----------------- 763 (938)
T ss_pred ccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C-----------------
Confidence 887 5799999999999999999 999999999999999999763 1
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEe
Q 001917 522 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 601 (996)
Q Consensus 522 ~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~ 601 (996)
.|++||||||| |+++|++.||.+| +|+++++.||++|+|||++|+++|+++|++++|.++||.|.
T Consensus 764 --------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~ 828 (938)
T PLN00094 764 --------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTE 828 (938)
T ss_pred --------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEc
Confidence 24589999999 7999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccc
Q 001917 602 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (996)
Q Consensus 602 ~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (996)
.||||+|+||++.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 829 ~PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 829 MPGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CCccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 99999999996654 34665 689999999999998 5579999999999999999994
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1e-67 Score=526.11 Aligned_cols=170 Identities=74% Similarity=1.123 Sum_probs=167.5
Q ss_pred ecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001917 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge 851 (996)
+|||+||||||||||+|+++||||+||.++|++++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+||
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhcc
Q 001917 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~ 931 (996)
.|+|||+|++|+++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 001917 932 LTGHERFSID 941 (996)
Q Consensus 932 l~g~e~~~Id 941 (996)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999999875
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=1.4e-46 Score=424.31 Aligned_cols=410 Identities=26% Similarity=0.394 Sum_probs=322.9
Q ss_pred HHHHHHHhcccCC---CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHH---cCCCCCccCCCCCEEEEecCCCCCC
Q 001917 160 EDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNK---LGSDSNKINPLVPVDLVIDHSVQVD 233 (996)
Q Consensus 160 ~~vekil~~~~~~---~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~---~G~dp~~inP~~pv~lviDHsv~~d 233 (996)
+.++|+.++.-+. ..+..+..+..-|-.||.||+|. ||.+++ +|.+ +|+|+..+....
T Consensus 374 TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMT-------rdElk~lAclgfs---------aD~vmQSfCHTA 437 (852)
T COG1049 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMT-------RDELKDLACLGFS---------ADLVMQSFCHTA 437 (852)
T ss_pred cHHHHHhhhccCCccccCCCcccceeeeeccccCCCCcc-------HHHHHHHHhhccc---------chhhhhhccccc
Confidence 4566777765442 24567778888999999999998 444444 3543 356665554433
Q ss_pred Cc-ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeE-eecCCCCc
Q 001917 234 VT-RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTT 311 (996)
Q Consensus 234 ~~-~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdtv-VGtDSHT~ 311 (996)
.+ ...+-..+...-.|--| +.++. ..||.||+|.+. +.++.||+| .|+||||.
T Consensus 438 aypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTR 492 (852)
T COG1049 438 AYPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTR 492 (852)
T ss_pred ccCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCccccc
Confidence 22 22222223333334333 22333 348999999975 458899985 89999999
Q ss_pred ccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHH------HH--H----cCcceeE
Q 001917 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQM------LR--K----HGVVGKF 379 (996)
Q Consensus 312 ~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~------Lr--~----~G~vgk~ 379 (996)
+.=|+ +|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||||-+|||..|--. |. + +-..|++
T Consensus 493 fpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRI 569 (852)
T COG1049 493 FPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRI 569 (852)
T ss_pred ccccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceeccee
Confidence 98654 67888888888999999999999999999999999999999999887422 22 1 1246999
Q ss_pred EEEecCccCCCChhhhhhhhccCcccCcccccccC-ChhHHHHHhhc----------CCCc-----hhHHHHHHHHHHcc
Q 001917 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFPV-DHVTLQYLKLT----------GRSD-----ETVAMVEGYLRANK 443 (996)
Q Consensus 380 VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~-De~T~~YL~~t----------gR~~-----~~~~~~~~y~k~~~ 443 (996)
+|. +|+.+|.+++-++++..++|..|..+.+-- +|..++||+.. |..+ ..++.+|+|+.+..
T Consensus 570 lEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ 647 (852)
T COG1049 570 LEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPE 647 (852)
T ss_pred EEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcc
Confidence 999 779999999999999999999999888766 45566899753 3332 34677899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCC
Q 001917 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (996)
Q Consensus 444 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~ 522 (996)
++ .+|.+|+|..+|+|||+.| ||++|.|++|||+..++++..+
T Consensus 648 ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~-------------------------------- 691 (852)
T COG1049 648 LL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD-------------------------------- 691 (852)
T ss_pred cc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC--------------------------------
Confidence 77 6899999999999999999 8999999999999999987631
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCc--cCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEE
Q 001917 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQ--VKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHI 600 (996)
Q Consensus 523 ~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~k--V~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v 600 (996)
.|+-+|||||... .-+++++|.+| +|.+ ++ .|++|+|-++...++|.++|++.+|-++|+.+
T Consensus 692 -------~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~ 755 (852)
T COG1049 692 -------KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARI 755 (852)
T ss_pred -------ccceeeeehhhcc-chhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhhcccee
Confidence 1456899999754 67899999998 4433 44 78899999999999999999999999999999
Q ss_pred eccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCCCCCccC
Q 001917 601 VGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTT 680 (996)
Q Consensus 601 ~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~ 680 (996)
--|||+.|+||.... ++|.. .+||++|||++|+|... .+||+|.+++|.+|+-|+|
T Consensus 756 E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki------------ 811 (852)
T COG1049 756 EMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI------------ 811 (852)
T ss_pred cCCCcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC------------
Confidence 999999999996553 45665 46899999999999985 4899999999999999998
Q ss_pred CCCCeeccccCCCChHHHHHHhh
Q 001917 681 KDGKSVYFKDIWPTTEEIAEVVQ 703 (996)
Q Consensus 681 ~~G~~v~l~diwPs~~ei~~~~~ 703 (996)
|+.||...++.
T Consensus 812 ------------Pt~eEY~~~v~ 822 (852)
T COG1049 812 ------------PTVEEYMAYVA 822 (852)
T ss_pred ------------CCHHHHHHHHH
Confidence 88999888776
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=380.07 Aligned_cols=404 Identities=24% Similarity=0.296 Sum_probs=265.9
Q ss_pred HHHHHccccccCCCCCCCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCcccccccee
Q 001917 437 GYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVK 516 (996)
Q Consensus 437 ~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 516 (996)
+|-++..+|.+. .+|+.+.|+.++++..-++.|.+.|..+||+..|+..-.++.....+ + | -.......
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd-~-------i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD-K-------I--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch-H-------H--HHhhhhhc
Confidence 344566677664 68999999999999999999999999999999999876554221111 0 0 00111235
Q ss_pred eecCCCccccc--CccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCee-EEEEcCcHHHHHHHHHcCchHHH
Q 001917 517 FSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYL 593 (996)
Q Consensus 517 ~~~~g~~~~l~--~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk-~~v~PGS~~V~~~l~~~Gl~~~L 593 (996)
+.|+|...... --.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 67777655333 334557999999999999999999999 9999987777 78999999999999999999999
Q ss_pred HhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCC
Q 001917 594 NEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFD 673 (996)
Q Consensus 594 ~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~ 673 (996)
.++||.|...||..|.|+..+.....|.| -+|+|||||||+|.+.++ +|+||.+.+|.++.|+-. ++.
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~ 223 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFR 223 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-ccc
Confidence 99999999999999999986655566664 389999999999999876 999999999999999863 111
Q ss_pred CCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccC-CCCCcccccCCCCCccccCCCCccccCCCCCC
Q 001917 674 KEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITK-GNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (996)
Q Consensus 674 ~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~ 752 (996)
.+..++ . .-..|+..-+.+-....+.++ +..+.. .++.- ..++....-+.+..+.-+..++|
T Consensus 224 ---~~~~k~---~--~~~~Ps~~l~~~g~s~sv~~~-----~~li~~ia~ds~--t~i~~~at~e~~s~~sSl~m~~F-- 286 (502)
T KOG0454|consen 224 ---EFTGKD---S--LKVSPSPFLTLKGESPSVLPA-----KDLIVSIATDSS--TDIPRVATMEFSSTTSSLGMETF-- 286 (502)
T ss_pred ---cccccc---c--ccCCCCceEEeCCCCcccccc-----ccchhhhhcccc--ccccceecccCCCccccccCcce--
Confidence 111110 0 001122110000000000000 000000 00000 00010000011111112223333
Q ss_pred CCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhh
Q 001917 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (996)
Q Consensus 753 ~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~ 832 (996)
..+.+ ++.|||+||+|+|+ +||+. +.+.. ..++.|..+++.
T Consensus 287 ---------~tLc~-----vv~dNiDTD~IIP~----------qfltl--i~~~~-------------~~~~~f~~~~~d 327 (502)
T KOG0454|consen 287 ---------HTLCG-----VVADNIDTDQIIPA----------QFLTL--IPSTG-------------LILSCFYEVALD 327 (502)
T ss_pred ---------eeeeh-----hhhhhCCcCcccCh----------hhhcc--cccch-------------hhhhhhhhheec
Confidence 11222 44599999999999 78875 22222 246677777652
Q ss_pred hhhcCCCCCC-ceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhc
Q 001917 833 NKLLNGEVGP-KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNL 911 (996)
Q Consensus 833 N~l~~g~~g~-~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nl 911 (996)
|..-. .+. +|++. +.|++. .|+|+|.|||||||||||.|++.+.|+++|||+||+|||++|+
T Consensus 328 -----g~~k~~~~d--------Fv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~ 390 (502)
T KOG0454|consen 328 -----GLPKSFVTD--------FVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNS 390 (502)
T ss_pred -----CCchhhccc--------eeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhH
Confidence 21101 222 34443 445443 7999999999999999999999999999999999999999999
Q ss_pred ccCccccccccccchhhhccCCCCeEEEEecCC
Q 001917 912 VGMGIIPLCFKAGEDADSLGLTGHERFSIDLPS 944 (996)
Q Consensus 912 vn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~ 944 (996)
+.+|.+|..-++....+. ...++..++.+..
T Consensus 391 ~atG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 391 VATGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred HhcCCccCCCceeeeccc--ceecceeeEEccc
Confidence 999998875443322221 2234556666553
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.2e-39 Score=315.65 Aligned_cols=141 Identities=35% Similarity=0.483 Sum_probs=124.3
Q ss_pred ecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001917 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge 851 (996)
+..++||||||||||+ ||++ |||.+.+.+.+|. +..|... |+ -+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~~-~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-GK-ANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-cc-cccccccCCCc
Confidence 3567999999999984 6776 6789989988884 4567664 33 34678889999
Q ss_pred ccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhcc
Q 001917 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~ 931 (996)
.++++++|++|++.|+|+|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|+++++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887764
Q ss_pred CCCCeEEEEe
Q 001917 932 LTGHERFSID 941 (996)
Q Consensus 932 l~g~e~~~Id 941 (996)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 678888885
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=5.9e-35 Score=295.22 Aligned_cols=156 Identities=31% Similarity=0.496 Sum_probs=127.1
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
+.++|||||||||+|+ +||.. .|.+.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 4689999999999998 89864 256778899998876 11
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
.+.+.+ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 112333 247999999999999999999999999999999999999999999999999999964 2444
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
++.+++++||+.. ++|.+ ..+|+++.+.. .++.+++++++||++||++++.
T Consensus 109 --l~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~--l~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 --IEDGDEVEVDLET--------GVITN-LTTGEEYKFKP--IPEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred --cCCCCEEEEECCC--------CEEEe-CCCCeEEEEee--CCHHHHHHHHcCCHHHHHHHhc
Confidence 4678899999765 23433 23478888863 3889999999999999999875
No 39
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=6.9e-35 Score=291.92 Aligned_cols=152 Identities=29% Similarity=0.510 Sum_probs=122.7
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
+.++|||||||||+|+ +||.. .+.|.|.+.+|.++| |+
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------------PE 40 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------------ch
Confidence 3589999999999998 89863 255778899998875 11
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
.+.+.+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 41 --------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 41 --------FAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred --------hhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 1122222 47999999999999999999999999999999999999999999999998887764 22
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk 992 (996)
+..+++++||+.. ++|+ ..+|+++.+.. .++.+++++++||++||++++
T Consensus 106 --i~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLET--------GEIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCC--------CEEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 3567889999865 2343 45667788754 489999999999999999874
No 40
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=8.4e-35 Score=294.48 Aligned_cols=155 Identities=34% Similarity=0.542 Sum_probs=126.1
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
+.++|||||||||+|+ +||... .|.+.|.+++|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 4689999999999998 898741 255778888998765 1
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
+.+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++.+ +.++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHH
Confidence 11245553 4799999999999999999999999999999999999999999999999998743 34444
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
+..+++++||+.. ++++ .+|+++.+.+ .++.+++++++|||++|++++-
T Consensus 110 --l~~gd~i~vDl~~--------~~v~---~~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~ 158 (166)
T PRK14023 110 --LEDGDEVELDLET--------GVLT---RGGETFQLRP--PPEFLLEALKEGSILEYYRKHG 158 (166)
T ss_pred --hCCCCEEEEECCC--------CEEE---ECCEEEEEee--CCHHHHHHHHcCCHHHHHHHhC
Confidence 4567889999875 2333 2567788877 6899999999999999999873
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=7.3e-35 Score=292.15 Aligned_cols=154 Identities=31% Similarity=0.497 Sum_probs=122.6
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
+.++||||+||||+|+ +||.. .|.|.|.+.+|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999998 88862 356778899998875 11
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
.+.+++ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|| |+... .+.++.
T Consensus 41 --------f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 124443 34899999999999999999999999999999999999999999999996 55433 344454
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIR 991 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~r 991 (996)
+..+++++||+.. .+|+ +..+|++|.+.. .++.+++++++||+++|+++
T Consensus 108 --l~~gd~i~idl~~--------~~v~-~~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 --IEEGDEVEVDLEK--------GIIK-NLTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred --hCCCCEEEEECCC--------CEEE-EecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 4577889999865 2332 134678888884 37899999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=294.25 Aligned_cols=165 Identities=25% Similarity=0.446 Sum_probs=130.1
Q ss_pred eeecC-CCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecC
Q 001917 770 LLNFG-DSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVP 848 (996)
Q Consensus 770 L~~lG-D~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p 848 (996)
...|| ||||||+|+|+ +||+. +++.+| .+++|.++|+.. |
T Consensus 11 ~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------------P 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------------P 51 (191)
T ss_pred EEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------------c
Confidence 45777 99999999998 99985 667776 478999998531 2
Q ss_pred CCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhh
Q 001917 849 TGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDAD 928 (996)
Q Consensus 849 ~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~ 928 (996)
+ ++.+. .+|+. .+|||||+|||||||||||+||++.+||+||||+||+|||++||+|+|+||+...+++..+
T Consensus 52 d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 1 33333 56664 4899999999999999999999999999999999999999999999999999987654434
Q ss_pred hccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc----ChHHHHHHHHh
Q 001917 929 SLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG----GILPFVIRNLI 994 (996)
Q Consensus 929 ~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG----GiL~yv~rk~~ 994 (996)
.+....+++++||+..+ +|+..+|.++...+ +++.++++.+| |++.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 44333578899998863 34344443444333 78999999999 99999998763
No 43
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=1.5e-34 Score=281.91 Aligned_cols=128 Identities=41% Similarity=0.518 Sum_probs=117.9
Q ss_pred hHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCC
Q 001917 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (996)
Q Consensus 796 ~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~ 875 (996)
+||+.+|+...++|+|+.|++||++|.+++|.|.++.|.|..+...+.+.+.|+++.+.+++++++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 68888999999999999999999999999999999999999988899999999999999999999999988888888889
Q ss_pred ccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccc
Q 001917 876 EYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKA 923 (996)
Q Consensus 876 nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~ 923 (996)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 44
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=3.5e-33 Score=295.33 Aligned_cols=173 Identities=26% Similarity=0.343 Sum_probs=125.8
Q ss_pred CcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCC
Q 001917 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (996)
Q Consensus 763 ~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~ 842 (996)
.++| |+ .++|||||||||+|+ +||..... ...+.|.|.+..|.+++- + .
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiPa----------~~l~~~~s----------n~~~~~~l~~~~F~~l~~-~--------~ 116 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIPA----------EYLTLVPS----------KPDEYEKLGSYALIGLPA-F--------Y 116 (246)
T ss_pred eEEE-eE-EEeCCCcchhhcccH----------HHhccccc----------cCCCHHHHHHhhhccCCc-c--------h
Confidence 3443 55 689999999999998 78875210 011357788888877640 0 0
Q ss_pred ceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCc-cccccc
Q 001917 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMG-IIPLCF 921 (996)
Q Consensus 843 ~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~G-ILPL~f 921 (996)
..+....|+.. . + ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||++.
T Consensus 117 ~~r~v~~Gd~~----------~-~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~ 184 (246)
T PLN00072 117 KTRFVEPGEMK----------T-K-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES 184 (246)
T ss_pred hhcccCCCCCC----------C-C-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc
Confidence 11111112110 0 1 269999999999999999999999999999999999999999999999 788874
Q ss_pred cccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 922 KAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 922 ~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
+.+.++. +..+++++||+.+ +.|+ +..+|++|.+++. . .+++++++|||++|++++-
T Consensus 185 -~~~~~e~--i~~Gd~i~VDl~~--------~~v~-n~t~g~~~~~~p~--~-~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 185 -EVRICEE--CKTGDVVTVELGN--------SVLI-NHTTGKEYKLKPI--G-DAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred -cHHHHHh--cCCCCEEEEECCC--------CEEE-ECCCCeEEEecCC--H-HHHHHHHcCCHHHHHHhhC
Confidence 3334444 4567889999864 2332 2456889988873 3 4999999999999999873
No 45
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=5.1e-31 Score=271.28 Aligned_cols=163 Identities=24% Similarity=0.385 Sum_probs=122.3
Q ss_pred eEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeec
Q 001917 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (996)
Q Consensus 768 ~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~ 847 (996)
++....|||||||+|+|+ +||+. ++ .+.+.+++|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP~----------rfl~~--~~-------------~~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIPK----------QFLKR--IT-------------RTGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhHH----------HHhCc--CC-------------HHHHHHhcccccccccc--ccC-CCC----
Confidence 454444999999999998 99975 23 34567899999997421 110 011
Q ss_pred CCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchh
Q 001917 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927 (996)
Q Consensus 848 p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~ 927 (996)
| .+++++ +.|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||++++.+..
T Consensus 58 p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 1 144443 55654 479999999999999999999999999999999999999999999999999999865444
Q ss_pred hhcc--CCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 928 DSLG--LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 928 ~~l~--l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
+.+. ...+++++||+.. ++|+ ..+|+++.+.+ ++...+.+..|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~--------~~v~--~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLEN--------QLIH--DSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCC--------CEEE--eCCCeEEEEEe---CHHHHHHHHcC
Confidence 4321 2567889999876 3343 34667788874 67888888877
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=2.2e-31 Score=257.11 Aligned_cols=121 Identities=45% Similarity=0.703 Sum_probs=95.1
Q ss_pred ecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 001917 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (996)
Q Consensus 772 ~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge 851 (996)
++|||||||||+|++. +||.+ |++.+.|.+.+|.+.+ |+
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p~-- 39 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------PT-- 39 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------ch--
Confidence 5899999999999963 35543 3566778888887643 11
Q ss_pred ccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhcc
Q 001917 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 931 (996)
Q Consensus 852 ~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~ 931 (996)
.+.+++.. ...|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||++++.+.++.
T Consensus 40 ------f~~~~~~~-~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 40 ------FAERAKAA-GPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred ------HHhhcccC-CCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 12333332 246999999999999999999999999999999999999999999999999999987655553
Q ss_pred CCCCeEEEEec
Q 001917 932 LTGHERFSIDL 942 (996)
Q Consensus 932 l~g~e~~~Idl 942 (996)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 45667777764
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.96 E-value=1.4e-30 Score=270.43 Aligned_cols=160 Identities=25% Similarity=0.430 Sum_probs=121.1
Q ss_pred eEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeec
Q 001917 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (996)
Q Consensus 768 ~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~ 847 (996)
+++.+.|||||||+|+|+ +||+. ++ .|.|.++.|.++|+... |...|
T Consensus 10 ~~~~l~~dnIDTD~IiPa----------~fl~~--~~-------------~~~l~~~~f~~~r~~~~---~~~~p----- 56 (200)
T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--IT-------------RTGFGKGLFDDWRYLDD---GQPNP----- 56 (200)
T ss_pred EEEEcCCCCCChhhcchH----------hHcCc--CC-------------HHHHHHhhhcccccccc---CCCCC-----
Confidence 566666999999999998 89864 22 34578999999986421 21111
Q ss_pred CCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchh
Q 001917 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927 (996)
Q Consensus 848 p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~ 927 (996)
.+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.+..
T Consensus 57 -----~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~i~ 127 (200)
T PRK01641 57 -----DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEEDVD 127 (200)
T ss_pred -----Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHHHHH
Confidence 133343 55653 479999999999999999999999999999999999999999999999999999754332
Q ss_pred hhcc-C--CCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 928 DSLG-L--TGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 928 ~~l~-l--~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
+... + ..++.++||+.. ++|+ . .|+++.+.+ ++..++++.+|
T Consensus 128 ~l~~~~~~~~g~~i~vDl~~--------~~v~--~-~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 128 ELFKLVEANPGAELTVDLEA--------QTVT--A-PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHhcCCCCEEEEEcCC--------CEEe--c-CCeEEEEEc---CHHHHHHHHcC
Confidence 2222 2 567889999875 2333 2 257777774 78899999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=1.5e-28 Score=225.95 Aligned_cols=73 Identities=33% Similarity=0.507 Sum_probs=63.0
Q ss_pred eEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEec
Q 001917 869 TIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDL 942 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl 942 (996)
.|||+|+|||||||||||+|+++++||++|||+||+|||++|++|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999987765543 2244566666653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.94 E-value=4.6e-28 Score=221.41 Aligned_cols=71 Identities=42% Similarity=0.562 Sum_probs=63.5
Q ss_pred eEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEe
Q 001917 869 TIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSID 941 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Id 941 (996)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++...++. +..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~--i~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLK--LHTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhh--cCCCCEEEeC
Confidence 6999999999999999999999999999999999999999999999999999987666654 3556666664
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.92 E-value=1.2e-25 Score=269.15 Aligned_cols=165 Identities=21% Similarity=0.277 Sum_probs=121.3
Q ss_pred CcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCC
Q 001917 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (996)
Q Consensus 763 ~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~ 842 (996)
.|++ ++ +++||||+||||||| +|+.. |.|.+...+..|.+.+
T Consensus 165 ~i~g-~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KITV-TV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccEE-EE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC------------
Confidence 4553 55 799999999999999 45432 4566666666665542
Q ss_pred ceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhcc------------ccccceEEEecchhhhhhhh
Q 001917 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP------------MLLVIKAVIAKSFERIHRSN 910 (996)
Q Consensus 843 ~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~------------~~lGVrAVIA~SF~RIhr~N 910 (996)
|+ ..+.+++++..|. .|+|+|+|||||||||||++++ ...+.++|||+||+|||++|
T Consensus 207 -----p~-----f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~N 275 (835)
T PRK09238 207 -----PG-----PIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNT 275 (835)
T ss_pred -----Cc-----HHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhh
Confidence 11 2333344444553 4999999999999999999996 23335999999999999999
Q ss_pred cccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCe-EEEEEecCCCHHHHHHHHhcChHHHH
Q 001917 911 LVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGK-SFTCTVRFDTEVELAYFDHGGILPFV 989 (996)
Q Consensus 911 lvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~yv 989 (996)
++|+|+|||+|+ ++. +..++.++||+.++ .|. ..+|+ .+.+.+ .++.+++++++||++||+
T Consensus 276 ain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~i 337 (835)
T PRK09238 276 MEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPLI 337 (835)
T ss_pred hHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHHH
Confidence 999999999995 233 45678899998752 333 24443 355555 678999999999999999
Q ss_pred HHHHh
Q 001917 990 IRNLI 994 (996)
Q Consensus 990 ~rk~~ 994 (996)
+.|-+
T Consensus 338 ~gr~l 342 (835)
T PRK09238 338 IGRGL 342 (835)
T ss_pred Hhccc
Confidence 98743
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.92 E-value=2.8e-26 Score=221.15 Aligned_cols=100 Identities=29% Similarity=0.402 Sum_probs=80.4
Q ss_pred cCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcc
Q 001917 773 FGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEK 852 (996)
Q Consensus 773 lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~ 852 (996)
..|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~--- 38 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE--- 38 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch---
Confidence 3689999999998 6773111 134677777776653 11
Q ss_pred cchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccc
Q 001917 853 LSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKA 923 (996)
Q Consensus 853 ~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~ 923 (996)
.+.+.+ .+.|||+|+|||||||||||+++++.+||+||||+||+|||++|++|+|+|||++++
T Consensus 39 -----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 -----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 112222 348999999999999999999999999999999999999999999999999999975
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=6.9e-25 Score=242.87 Aligned_cols=419 Identities=14% Similarity=0.068 Sum_probs=295.9
Q ss_pred HHHHHHHHhcccCCC---CcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 001917 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (996)
Q Consensus 159 ~~~vekil~~~~~~~---~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (996)
++..++|+++..+.. .+-++...+|-.+.||..+.-+.--+ .++++....+|+|++ +...+||..-+...
T Consensus 67 ~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpgs 139 (502)
T KOG0454|consen 67 MTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPGS 139 (502)
T ss_pred cccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecCc
Confidence 555677877764432 23456677788888888776553221 233455556677765 67789997665433
Q ss_pred ccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEeecCCCCcccC
Q 001917 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMID 314 (996)
Q Consensus 236 ~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~G 314 (996)
+ .-....+.+++.|-...-.| .|- .+--+|..-+--.|.||. |+-| .+.-.| ....|+||||++.+
T Consensus 140 g--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlma 206 (502)
T KOG0454|consen 140 G--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLMA 206 (502)
T ss_pred h--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHH---HHhh------hccCCCccccccccccchhhh
Confidence 2 11122233344443222223 443 223344444444799996 3222 455666 46899999999999
Q ss_pred cccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhh
Q 001917 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLAD 394 (996)
Q Consensus 315 alG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~d 394 (996)
+.+.++.|+|+.++..........+++|.++.+++.|+.+.-..++|+++.++...-..+...+..||-+-.. +|+++.
T Consensus 207 ~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~ 285 (502)
T KOG0454|consen 207 ASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGMET 285 (502)
T ss_pred hhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCcc
Confidence 9999999999999999998888999999999999999999999999999999888778888899999977666 899999
Q ss_pred hhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCC-CCcccEEEEEEcCCceeeec
Q 001917 395 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQ-ERVYSSYLELNLADVEPCIS 473 (996)
Q Consensus 395 RaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~-~a~Y~~~ieiDLs~veP~VA 473 (996)
|+|+|||..|-+-|-+++|+|-.|+-|-....++.. + -| +.|. .+.|..-+.+|.+..+|..+
T Consensus 286 F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~----~~dg~~k~~~~dFv~~vE~~~~~si 349 (502)
T KOG0454|consen 286 FHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV----ALDGLPKSFVTDFVLPVEPLRKYSI 349 (502)
T ss_pred eeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh----eecCCchhhccceeccccccceeEE
Confidence 999999999999999999998776665444333221 0 12 1222 36789999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHH
Q 001917 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (996)
Q Consensus 474 gP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~l 553 (996)
.|+. ||.--=++- .|-.|...++|+|+-..-++.|+
T Consensus 350 ii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I---- 385 (502)
T KOG0454|consen 350 IIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI---- 385 (502)
T ss_pred Eecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH----
Confidence 8887 544221111 13345567899999999888665
Q ss_pred HHHHHHhcCCccCCCeeEEEEcCcHHHHH-----HHHH---cCchHHHHhcCcEEeccCccccccCCCCCChhhhccccC
Q 001917 554 VAKKACELGLQVKPWVKTSLAPGSGVVTK-----YLLQ---SGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD 625 (996)
Q Consensus 554 Lak~A~~kG~kV~p~Vk~~v~PGS~~V~~-----~l~~---~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~ 625 (996)
.+|+-++.|+.++ +-..+.|--+-++. .+-. .=++.+.+..+..=+.|-|..|.++.-+ .+... .+
T Consensus 386 FfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~-~~ 459 (502)
T KOG0454|consen 386 FFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAY-AR 459 (502)
T ss_pred HHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHh-hc
Confidence 4667788999877 34455555543332 1222 1256677788886678999999998522 11111 22
Q ss_pred CCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCc
Q 001917 626 NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (996)
Q Consensus 626 ~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (996)
.+. .|+|+||||++|||....++|||||.+|+|+++.|+
T Consensus 460 ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 KEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred ccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 222 689999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.88 E-value=2.4e-23 Score=203.01 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=57.9
Q ss_pred eEEEeCCccCCCCchhhhhhccc------------cccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCe
Q 001917 869 TIILAGAEYGSGSSRDWAAKGPM------------LLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHE 936 (996)
Q Consensus 869 ~IIVAG~nyG~GSSRE~Aak~~~------------~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e 936 (996)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 49999999999999999999998 77999999999999999999999999999862 11 34566
Q ss_pred EEEEe
Q 001917 937 RFSID 941 (996)
Q Consensus 937 ~~~Id 941 (996)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66654
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.87 E-value=2e-22 Score=241.09 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=120.2
Q ss_pred CCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCC
Q 001917 762 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841 (996)
Q Consensus 762 ~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g 841 (996)
+.|++ + +.++||+|+||+|||+ +|+..+ .+.+.+.+..|.+.+
T Consensus 165 ~~i~g-~-V~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~----------- 207 (844)
T TIGR00117 165 EKITV-T-VFKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR----------- 207 (844)
T ss_pred hheEE-E-EEEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC-----------
Confidence 34554 4 4599999999999998 787652 234444444443332
Q ss_pred CceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhcc-------------ccccceEEEecchhhhhh
Q 001917 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLVIKAVIAKSFERIHR 908 (996)
Q Consensus 842 ~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVrAVIA~SF~RIhr 908 (996)
|+ ..+.-.+.++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+|||+
T Consensus 208 ------p~-----~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFf 274 (844)
T TIGR00117 208 ------EG-----IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFF 274 (844)
T ss_pred ------cc-----HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhh
Confidence 11 01111223444433 999999999999999999999 9999 9999999999999
Q ss_pred hhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCe-EEEEEecCCCHHHHHHHHhcChHH
Q 001917 909 SNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGK-SFTCTVRFDTEVELAYFDHGGILP 987 (996)
Q Consensus 909 ~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~ 987 (996)
||++|.|+|||+++ .+ .+..|+.++||+.++ .|. ..+|+ .+++.+ .++..++++++||++|
T Consensus 275 rnain~Gl~~ie~~----~~--~l~~GD~i~Id~~~G--------~I~--n~~g~~~~~f~~--~p~~l~div~AGGli~ 336 (844)
T TIGR00117 275 NTMEDSGALPIEVD----VS--NLNMGDVIDIYPYKG--------EIT--NHEGELLATFEL--KPETLLDEVRAGGRIP 336 (844)
T ss_pred cchhhcCCCeEEeC----Hh--hcCCCCEEEEECCCC--------EEE--eCCCCEEEEeee--CCHHHHHHHHcCCchh
Confidence 99999999999986 12 256788999998752 332 23554 477765 4788999999999999
Q ss_pred HHHHHH
Q 001917 988 FVIRNL 993 (996)
Q Consensus 988 yv~rk~ 993 (996)
|+.-|-
T Consensus 337 ~i~gr~ 342 (844)
T TIGR00117 337 LIIGRG 342 (844)
T ss_pred hhhccc
Confidence 998764
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.74 E-value=2.2e-18 Score=166.13 Aligned_cols=91 Identities=25% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEE
Q 001917 879 SGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT 958 (996)
Q Consensus 879 ~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~ 958 (996)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+.++.......+..+++++||+.+ ++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~--------~~v~-- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQ--------QKII-- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCC--------CEEE--
Confidence 999999999999999999999999999999999999999999876543322245778899999876 2333
Q ss_pred cCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 959 TDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 959 ~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
. .+++|.+.+ .+...+.+.+|
T Consensus 72 ~-~~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 S-PVEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred c-CCeEEEEEE---CHHHHHHHHhC
Confidence 2 236677776 34445555555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.73 E-value=1.4e-17 Score=199.58 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=96.8
Q ss_pred HHHHHHcCCceEEEeCCccCCCCchhhhhhcc-------------ccccceEEEecchhhhhhhhcccCccccccccccc
Q 001917 859 AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 925 (996)
Q Consensus 859 A~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~ 925 (996)
-...|+.|.| |+|+|+|||||||||||+.++ +..|+.| ||+||+|||+||++|.|+|||+++
T Consensus 285 i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~--- 359 (938)
T PLN00094 285 IEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD--- 359 (938)
T ss_pred HHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc---
Confidence 3677889987 888999999999999999999 9999999 999999999999999999999986
Q ss_pred hhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEE-EEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 926 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSF-TCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 926 ~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f-~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
.+ .+..|+.++||..++ +|+ +..+|+++ .+.+ .++..++++++||++||++-|-
T Consensus 360 -v~--~i~~GD~I~id~~~G--------~I~-n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~ 414 (938)
T PLN00094 360 -VK--NLNMGDVIDIYPYEG--------VVK-RHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRG 414 (938)
T ss_pred -Hh--hcCCCCEEEEEcCCC--------EEE-ecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhccc
Confidence 12 256788899987652 232 23567777 6655 4788999999999999998764
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.22 E-value=1.4e-06 Score=90.26 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=72.0
Q ss_pred hHHHHHHcCCceEEEeCCccCCCCchhhhhhcccccc------------ceEEEecchhhhhhhhcccCccccccccccc
Q 001917 858 AAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLV------------IKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 925 (996)
Q Consensus 858 aA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lG------------VrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~ 925 (996)
+-+..|+.|.|.+.| |.--|+||||--|.-...... --.||...++.||+.-+---|-||++++-
T Consensus 45 ~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv-- 121 (204)
T PF06434_consen 45 QIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDV-- 121 (204)
T ss_dssp HHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE-----
T ss_pred HHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEec--
Confidence 346778889886666 888999999998876654322 24688999999999999999999998742
Q ss_pred hhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCe-EEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001917 926 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGK-SFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 926 ~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~ 994 (996)
-.+..|+.++|+.-++ + +...+|+ ..++.+ .++..++-++|||-+|.+.-|-+
T Consensus 122 ----~~l~~Gdvi~I~p~~g--------k--i~~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 122 ----SSLNTGDVITIYPYEG--------K--IYKENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ----TT--TT-EEEEETTTT--------E--EEETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred ----cccCCCcEEEEecCCc--------E--EECCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHH
Confidence 2356788888886542 2 2234453 222222 34556789999999999887643
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.63 E-value=0.025 Score=67.52 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=71.6
Q ss_pred HHHHHHcCCceEEEeCCccCCCCchhhhhhccccccc------------eEEEecchhhhhhhhcccCccccccccccch
Q 001917 859 AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVI------------KAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926 (996)
Q Consensus 859 A~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGV------------rAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~ 926 (996)
-+..++.|+|.+. .|.--|+||||--|.......+- -.|+..-.+.||+.-.---|-||++++-
T Consensus 214 i~~lk~Kg~~vay-vgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv--- 289 (852)
T COG1049 214 IEALKQKGHPVAY-VGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV--- 289 (852)
T ss_pred HHHHhhcCceEEE-eccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee---
Confidence 3677888988555 55669999999987654333221 2344445567777777777777777532
Q ss_pred hhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 001917 927 ADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 992 (996)
Q Consensus 927 ~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk 992 (996)
-.|..|+.++|+--+ | +++ +..+|+. -.+..+.++..++.+++||-+|.+.-|
T Consensus 290 ---~~l~~Gdvi~i~py~-------g-ki~-~~~~ge~-v~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ---SNLEMGDVIDIYPYE-------G-KIR-NNNTGEV-VATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---ccccccceEEeeccC-------C-eee-ccCCCcE-EEEeecCchhHHHHHhcCCceeEEEcc
Confidence 134556777776333 2 121 1223422 222233478899999999998876543
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.16 E-value=0.055 Score=63.21 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=59.0
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 001917 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (996)
Q Consensus 530 ~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GC 605 (996)
+|+.++|| |=--|.+.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|..|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45566675 8888899999999999 89999999988766 678999999999999999999999996655
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=91.73 E-value=0.43 Score=54.98 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=56.8
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 001917 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (996)
Q Consensus 530 ~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GC 605 (996)
.++..+|| |---|.+.++..|.+| +|++-++.+.++|. -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 44566665 7788899999999999 88887777776655 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=85.44 E-value=1.8 Score=50.67 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=55.9
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccc
Q 001917 531 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (996)
Q Consensus 531 V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG 610 (996)
+++++| .|=--|.+.++.-|.+| +|++.+|.++++|. -|+.|+ +.+.|+.+.|+++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 446666 68888899999999999 89877666665554 567777 99999999999999999997777 663
No 62
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=26.62 E-value=52 Score=30.69 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=25.6
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 535 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 535 ~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
+|++|..|.-... +||..|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 5899999977665 577888899999998876
No 63
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.03 E-value=74 Score=32.00 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=26.9
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
|++||+|..|=---.| ||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6889999999666555 66778899999998877
No 64
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=24.27 E-value=48 Score=33.48 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCCChhhhccc---cCCCeeEEeeeccCCCC
Q 001917 613 GDLDESVASTI---TDNDIVAAAVLSGNRNF 640 (996)
Q Consensus 613 g~l~~~~~~~i---~~~~~~~~~VsS~NRNF 640 (996)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56788777776 45577888899999999
No 65
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=21.84 E-value=48 Score=33.17 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred cEEeccCccccccCCCCCChhhhcccc---CCCeeEEeeeccCCCC
Q 001917 598 FHIVGYGCTTCIGNSGDLDESVASTIT---DNDIVAAAVLSGNRNF 640 (996)
Q Consensus 598 f~v~~~GCg~CiG~sg~l~~~~~~~i~---~~~~~~~~VsS~NRNF 640 (996)
|.++.|.=+..-+ .+.++.++.+-+. ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444444333332 3447888877776 4556666788999999
No 66
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=20.02 E-value=1.2e+02 Score=32.82 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=45.0
Q ss_pred CeeEEEEcC--cHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCC
Q 001917 568 WVKTSLAPG--SGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVH 645 (996)
Q Consensus 568 ~Vk~~v~PG--S~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g 645 (996)
.+.-.+.|| |..+.+-+.+.|+++.|.+.=.. .-|--|||-|+- -|..++.+. .+....-.-=-+-+||.=||+=
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ~ 114 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQV 114 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEcccccccc
Confidence 467789999 77788889999999988765443 335557899862 122222210 0001000011256899999983
Done!