Query 001917
Match_columns 996
No_of_seqs 398 out of 2889
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 5E-251 2E-255 2222.7 60.8 886 103-995 2-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 3E-178 1E-182 1579.0 56.7 698 159-993 35-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 2.8E-99 1E-103 904.4 38.6 425 157-709 380-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 6.8E-38 2.3E-42 317.0 9.9 155 770-994 7-161 (170)
5 1l5j_A Aconitate hydratase 2; 100.0 1E-39 3.5E-44 391.5 -4.0 280 639-994 48-353 (865)
6 2hcu_A 3-isopropylmalate dehyd 100.0 1.5E-37 5.1E-42 323.4 9.1 182 747-983 4-187 (213)
7 1v7l_A 3-isopropylmalate dehyd 100.0 1.5E-37 5.2E-42 312.4 6.8 151 770-993 7-158 (163)
8 3vba_A Isopropylmalate/citrama 100.0 5.7E-35 1.9E-39 296.2 10.4 158 768-994 8-165 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 3.4E-32 1.2E-36 280.7 6.0 164 764-983 10-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 1.5E-31 5E-36 269.4 6.9 154 767-983 12-169 (171)
11 2r4q_A Phosphotransferase syst 41.5 18 0.0006 34.0 3.4 33 533-566 5-37 (106)
12 2r48_A Phosphotransferase syst 39.7 18 0.00062 34.0 3.2 33 533-566 5-37 (106)
13 2kyr_A Fructose-like phosphotr 31.7 23 0.00078 33.5 2.5 33 533-566 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 28.0 29 0.00099 32.5 2.5 33 533-566 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=4.9e-251 Score=2222.66 Aligned_cols=886 Identities=61% Similarity=1.054 Sum_probs=842.4
Q ss_pred CchhhhcccccCCCCCceeeEeecCCCCCCCCCCCCceeeeeccccccccCCccccHHHHHHHHhcccCCCCcceEeecc
Q 001917 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (996)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllE~~~r~~~~~~~~~~~vekil~~~~~~~~~~ei~~~p 182 (996)
+||..+++.|...+ +.++||+|+++++..+++|||||||||||+||||||+.+++++|+++++|..+...+.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CchhhhhcccCCCC--ceeEEEEhHHccccchhhCCchHHHHHHHHHhccCCcchhHHHHHHHhcccccCCCCCEEEEec
Confidence 78987778888653 4799999999986678999999999999999999999999999999999987666678999999
Q ss_pred ceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcccHHHHHHhhHHHHHHhhhhhhhhhhc
Q 001917 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (996)
Q Consensus 183 drvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~e~~rn~ery~flkw~ 262 (996)
|||++||+||+|+++||++||++++++|.||.++||.+||++|+||+||++.++..+|..+|+.+||+||+|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeccCCHHHHHHHHccCceEeecC
Q 001917 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (996)
Q Consensus 263 ~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vP 342 (996)
+++|+||+|+|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHhccCCCCCCCCCCCcceehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCCChhhhhhhhccCcccCcccccccCChhHHHHH
Q 001917 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (996)
Q Consensus 343 evVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL 422 (996)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|+|||+||||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEEccCCCCcchhHHHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHccccccCCCCC-CCCcccEEEEEEcCCceeeeccCCCCCCcccccccchhhhhhhcccccC
Q 001917 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (996)
Q Consensus 423 ~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~ 501 (996)
+.|||++++++++|+|++++++|++. .+| ++|+|+++++||||+|||+||||++|||++||++++++|.+++..++++
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HhcCCchHHHHHHHHHHHHHHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhccccc
Confidence 99999998889999999999999753 234 8999999999999999999999999999999999999998777665444
Q ss_pred CCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHH
Q 001917 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (996)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~ 581 (996)
+|+..+.+...+..+++|+|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred ccccccchhhcccceeecCCccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHH
Confidence 44321111100124577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHH
Q 001917 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (996)
Q Consensus 582 ~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (996)
+||+++||+++|+++||+|++|||++||||+++++++++++|.+||+++++|||+||||+||||+..+++|||||+||||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCccchhcccccccCCCCCcccccCCCCCccccCCC
Q 001917 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPN 741 (996)
Q Consensus 662 ~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 741 (996)
|||+|+|++|+++||+|.+++|++|||+||||+.+|+++++.+.+++++|.+.|..++.+++.|+.++++.+++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHhcCeeecccccCccccCCCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhh
Q 001917 742 STYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVM 821 (996)
Q Consensus 742 styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm 821 (996)
||||++||||++++..++++++++++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred cccccCCCCccccccCCCCcccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEec
Q 001917 822 ARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAK 901 (996)
Q Consensus 822 ~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~ 901 (996)
+||+|+|+|+.|+|++ .+|++|+|+|+|+.|++||+|++|+++|+++|||||+|||||||||||+|+++++||+||||+
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 797 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred hhhccccccccccccc-ccCCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEh
Confidence 9999999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHH
Q 001917 902 SFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFD 981 (996)
Q Consensus 902 SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~ 981 (996)
||+||||+||+|||||||+|+++++++.+++.++++++|++.+ .++||+.++++..+|++|.++++++|+.|++||+
T Consensus 798 SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 874 (888)
T 2b3y_A 798 SYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874 (888)
T ss_dssp CBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHH
T ss_pred hHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999764 4889987776556789999999999999999999
Q ss_pred hcChHHHHHHHHhc
Q 001917 982 HGGILPFVIRNLIK 995 (996)
Q Consensus 982 aGGiL~yv~rk~~~ 995 (996)
+||||||++|++++
T Consensus 875 aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 875 NGGILNYMIRKMAK 888 (888)
T ss_dssp HTSHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhhC
Confidence 99999999999864
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=2.9e-178 Score=1579.00 Aligned_cols=698 Identities=30% Similarity=0.464 Sum_probs=609.3
Q ss_pred HHHHHHHHhcccCCC------C-cceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 001917 159 KEDVEKIIDWENSAP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (996)
Q Consensus 159 ~~~vekil~~~~~~~------~-~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 231 (996)
+|+.|||++.+.... . +.+|.++||||++||+||+++++||++| |.++ |..|.++++||++|
T Consensus 35 ~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~v~ 103 (753)
T 1c96_A 35 LTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHLIE 103 (753)
T ss_dssp CCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSSCC
T ss_pred CCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHHh-------CCCC----CCCCCceecCCCCC
Confidence 678999998876532 2 3369999999999999999999999654 8775 34567899999999
Q ss_pred CCCcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEeecCCCC
Q 001917 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (996)
Q Consensus 232 ~d~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (996)
++..+..+ +..++.+|.|+|.||+|++++| |++|+|||+||||||++|+ +++|| ++|||||||
T Consensus 104 ~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSHT 167 (753)
T 1c96_A 104 AQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSHT 167 (753)
T ss_dssp BSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTTG
T ss_pred CCCCcccc-----hhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEeccc----------ccCCCcEEecCCCCC
Confidence 99765433 5578999999999999999999 8999999999999999994 56897 799999999
Q ss_pred cccCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHcCcceeEEEEecCccCCC
Q 001917 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGEL 390 (996)
Q Consensus 311 ~~~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~L 390 (996)
||+||||+|||||||+|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++|
T Consensus 168 ~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~L 247 (753)
T 1c96_A 168 PNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSI 247 (753)
T ss_dssp GGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGS
T ss_pred CccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhccCcccCcccccccCChhHHHHHhhcCCCchhHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcee
Q 001917 391 SLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEP 470 (996)
Q Consensus 391 S~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgR~~~~~~~~~~y~k~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP 470 (996)
|+++|||||||++|+|||+|+||+|++|++||+.+||++ .++++++|.+ +| .+|++|.|+++++||||+|||
T Consensus 248 S~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~leP 319 (753)
T 1c96_A 248 SCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELKP 319 (753)
T ss_dssp CHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCCC
T ss_pred CcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---hc----cCCCCCceeEEEEEEccccce
Confidence 999999999999999999999999999999999999887 4677777765 44 478999999999999999999
Q ss_pred eeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHH
Q 001917 471 CISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLG 550 (996)
Q Consensus 471 ~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~A 550 (996)
+||||++|||++||+|++..+++ ++++ -+|++||||||||||++||+ +
T Consensus 320 ~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~-~ 367 (753)
T 1c96_A 320 HINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMG-R 367 (753)
T ss_dssp EEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHH-H
T ss_pred eecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-----cceEEEEEecCCCCCHHHHH-H
Confidence 99999999999999999865432 0111 15889999999999999955 5
Q ss_pred HHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEeccCccccccCCCCCChhhhccccCCCeeE
Q 001917 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (996)
Q Consensus 551 A~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CiG~sg~l~~~~~~~i~~~~~~~ 630 (996)
|+.|+|+|+++|+ ++.||++|+|||++|++||+++||+++|+++||.|++|||++||||+++.. ++. .+++
T Consensus 368 AA~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~--- 438 (753)
T 1c96_A 368 SAAVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN--- 438 (753)
T ss_dssp HHHHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE---
T ss_pred HHHHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCCceeeecCCCCcc--ccc--CCcc---
Confidence 5567788888776 455999999999999999999999999999999999999999999998632 111 1222
Q ss_pred EeeeccCCCCCCCCC-CccCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcc
Q 001917 631 AAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPD 709 (996)
Q Consensus 631 ~~VsS~NRNF~GR~g-p~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwPs~~ei~~~~~~~v~~~ 709 (996)
++|||+||||+|||| ...+.+|||||+|||||||+|+|+||+.+||| .++||++|||+| |+.+|+.+ +
T Consensus 439 ~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~ 507 (753)
T 1c96_A 439 TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------A 507 (753)
T ss_dssp EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------S
T ss_pred eEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCCCeeeecC--Cccchhhh--------h
Confidence 478999999999994 44467999999999999999999999999999 899999999999 88887633 3
Q ss_pred chhcccccccCCCCCcccccCCC-CCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCCCC
Q 001917 710 MFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSI 788 (996)
Q Consensus 710 ~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG~I 788 (996)
+|. .++..|+.++.+. +..|.|+++||||+.||||++ ++..+++++++|+++||+||||||||||
T Consensus 508 ~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG-- 573 (753)
T 1c96_A 508 EFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG-- 573 (753)
T ss_dssp CCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG--
T ss_pred hcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCccccccceEEEeccCCcccccccccc--
Confidence 343 4567798876654 568999999999999999975 3446899999999999999999999997
Q ss_pred CCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcC--CCCCC---ceeecCCCcccchhhhHHHHH
Q 001917 789 HKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP---KTVHVPTGEKLSVFDAAMKYK 863 (996)
Q Consensus 789 ~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~--g~~g~---~t~~~p~ge~~~v~daA~~y~ 863 (996)
+||++ ||+|+|++ .|.|.. +.+++ +|+|+|+||.++++|+|++|+
T Consensus 574 -------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~ 623 (753)
T 1c96_A 574 -------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYK 623 (753)
T ss_dssp -------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHHH
T ss_pred -------hhhcc----------------------ccchhhhh-hhhccccccccCCCcceeEEecCCcccccHHHHHHHH
Confidence 78876 46899998 777763 23444 899999999999999999999
Q ss_pred HcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhhccCCCCeEEEEecC
Q 001917 864 SAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLP 943 (996)
Q Consensus 864 ~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~ 943 (996)
++|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. |+++|+++|+..
T Consensus 624 ~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~gl 701 (753)
T 1c96_A 624 QHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQGL 701 (753)
T ss_dssp HHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEECG
T ss_pred HhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhhh--cCCCCEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999998777774 678999999832
Q ss_pred CccccCCCCCeEEE--EcCCCeE--EEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 944 SKISEIRPGQDVTV--TTDSGKS--FTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 944 ~~~~~l~pg~~v~v--~~~~G~~--f~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
. ++.||+.+++ +..+|++ |.+.++ +|+.|++||++||||||++++.
T Consensus 702 ~---~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 702 K---DFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp G---GCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred H---HcCCCceEEEEEEecCCcEEEEEEeCC-CCHHHHHHHHcCCHHHHHHHhh
Confidence 2 5788887665 3456755 455555 5999999999999999999864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=2.8e-99 Score=904.38 Aligned_cols=425 Identities=23% Similarity=0.339 Sum_probs=369.2
Q ss_pred ccHHHHHHHHhcccCC---CCcceEeeccceeeeccCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 001917 157 VKKEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (996)
Q Consensus 157 ~~~~~vekil~~~~~~---~~~~ei~~~pdrvl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (996)
..++.+|||++++.+. ..+..|.++||||++||+||+|+ |++++++|.+ +++|+. |..++||.++.+
T Consensus 380 mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~-------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~ 449 (865)
T 1l5j_A 380 RGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT-------RDELKDLACL--GFSADL-VMQSFCHTAAYP 449 (865)
T ss_dssp SCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-------HHHHHHTTCC--SCCSSC-EEECCCSSSSSC
T ss_pred CCccHHHHHHHHHhCCCccCCCCEEEEEeeEEEEeccCcHHH-------HHHHHHcCCC--cCCCCe-EEEECCCCCcCC
Confidence 3578899999987653 23567999999999999999985 6677778865 677775 556899998876
Q ss_pred CcccHHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EeecCCCCcc
Q 001917 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (996)
Q Consensus 234 ~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~ 312 (996)
. +...+++||.++|.+.+|+ .++|||+|||||++.| +++||+ +|||||||||
T Consensus 450 ~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~ 502 (865)
T 1l5j_A 450 K---------PVDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 502 (865)
T ss_dssp C---------HHHHHHHHHHHHHHHTTTC-------EECCTTSBCHHHHHGG-----------GCCTTCEEEESSTTCCC
T ss_pred C---------HHHHHHHHHHHHHHHHcCC-------eEeCCCCceeeeeecc-----------cccccceEEeCCCCccc
Confidence 3 2346788999999998886 4689999999998643 789975 6999999999
Q ss_pred cCcccceeccCCHHHHHHHHccCceEeecCcEEEEEEecccCCCcchhhHHHHHHHHHHHc------------CcceeEE
Q 001917 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKH------------GVVGKFV 380 (996)
Q Consensus 313 ~GalG~lg~GVGg~Eaea~mlg~~~~l~vPevVgV~L~G~L~~GVtakDliL~i~~~Lr~~------------G~vgk~V 380 (996)
+||| |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|||||+|++.++++ |++||+|
T Consensus 503 ~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~v 579 (865)
T 1l5j_A 503 PIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579 (865)
T ss_dssp SSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEE
T ss_pred cccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChHHHHHHHHHHHHhcccccccccCcccceeeEEE
Confidence 9975 557799999999999999999999999999999999999999999999888743 3479999
Q ss_pred EEecCccCCCChhhhhhhhccCcccCcccccccCC-hhHHHHHhh----------cCCC-----chhHHHHHHHHHHccc
Q 001917 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS-----DETVAMVEGYLRANKM 444 (996)
Q Consensus 381 EF~G~Gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D-e~T~~YL~~----------tgR~-----~~~~~~~~~y~k~~~l 444 (996)
|| +||++||+++|||||||++|+|||+|+||+| ++|++||+. +||. +++++.+++|++++++
T Consensus 580 Ef--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~ 657 (865)
T 1l5j_A 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 657 (865)
T ss_dssp EE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCC
T ss_pred EE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhhhhhhhhccCCccchhHHHHHHHHHHHHhccce
Confidence 99 5799999999999999999999999999977 778999998 6874 3456778999999998
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeeccCCCCCCcccccccchhhhhhhcccccCCCcCCCccccccceeeecCCCc
Q 001917 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (996)
Q Consensus 445 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (996)
| .+|++|.|+++++||||+| ||+||+|++|||++|++++++.
T Consensus 658 l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~--------------------------------- 700 (865)
T 1l5j_A 658 L----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE--------------------------------- 700 (865)
T ss_dssp C----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC---------------------------------
T ss_pred e----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhccc---------------------------------
Confidence 8 4789999999999999999 8999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCCeeEEEEcCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 001917 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (996)
Q Consensus 524 ~~l~~g~V~~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v~~~ 603 (996)
.|+++|||||||+ ++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|+++||.|.+|
T Consensus 701 ------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~p 767 (865)
T 1l5j_A 701 ------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIP 767 (865)
T ss_dssp ------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCS
T ss_pred ------ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEEcCC
Confidence 1347899999877 99999998888 8888999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCChhhhccccCCCeeEEeeeccCCCCCCCCCCccCcceecChHHHHHHHHhCccccCCCCCCCccCCCC
Q 001917 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (996)
Q Consensus 604 GCg~CiG~sg~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (996)
|||+|+||++.+ .+|++ ++||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 768 gCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAiaG~i--------------- 820 (865)
T 1l5j_A 768 GCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL--------------- 820 (865)
T ss_dssp SCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC---------------
T ss_pred ccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCCC-cceEECCHHHHHHHHhCCcC---------------
Confidence 999999998643 45675 6799999999999965 57899999999999999998
Q ss_pred CeeccccCCCChHHHHHHhhccCCcc
Q 001917 684 KSVYFKDIWPTTEEIAEVVQSSVLPD 709 (996)
Q Consensus 684 ~~v~l~diwPs~~ei~~~~~~~v~~~ 709 (996)
|+.+|+.+++...++|+
T Consensus 821 ---------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 821 ---------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp ---------CCHHHHHHHHHHHHTTH
T ss_pred ---------CCHHHHHHHHHhhcCCc
Confidence 56788888888877773
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.8e-38 Score=317.02 Aligned_cols=155 Identities=32% Similarity=0.515 Sum_probs=127.9
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
++++|||||||||+|| +||+ |.|.+.+.+.+|.++| |
T Consensus 7 v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCChhhcChH----------HHhC---------------CCCHHHHHHHhcccCC-----------------C-
Confidence 6789999999999998 7885 3466778888898875 1
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TD- 108 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GG-
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HH-
Confidence 12234442 5899999999999999999999999999999999999999999999999999997 33
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~ 994 (996)
.+.++++++||+.. | +|+ ...+|++|.+. ..++.+++++++||+|||++++++
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 161 (170)
T 2pkp_A 109 -EIKDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKL 161 (170)
T ss_dssp -GCCTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHH
T ss_pred -HcCCCcEEEEECCC-------C-EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHH
Confidence 45788999998654 3 333 23567887663 469999999999999999999875
No 5
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1e-39 Score=391.51 Aligned_cols=280 Identities=19% Similarity=0.246 Sum_probs=217.7
Q ss_pred CCCCCCCCc------cCcceecChHHHHHHHHhCccccCCCCCCCccCCCCCee-ccccCCCChHHHH----HHhhc-cC
Q 001917 639 NFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV-YFKDIWPTTEEIA----EVVQS-SV 706 (996)
Q Consensus 639 NF~GR~gp~------~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v-~l~diwPs~~ei~----~~~~~-~v 706 (996)
=|++|+.|. ++++||+|| |.+++..+.|+.++.+++||+...|..| +|.||| +.+|++ +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478999998 889999999 6799999999999999999999999999 899999 566666 56655 45
Q ss_pred CccchhcccccccCCCCCcccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCcccceEeeecCCCccccccccCC
Q 001917 707 LPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAG 786 (996)
Q Consensus 707 ~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~~L~~lGD~itTDhIsPaG 786 (996)
-.++|.+.|+....||+.|+++ ++.|.+.+-|..+|+. ++.|++ + +.++||||||||||||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~----------~~~i~g-~-v~~~~~nIdTD~IiPa- 185 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL----------AEKLTV-T-VFKVTGETNTDDLSPA- 185 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC----------CSCEEE-E-EEEEEEEEEHHHHSCG-
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCC----------CceEEE-E-EEecCCCCchhccCch-
Confidence 6889999999999999999875 7899987766555554 234555 3 5667999999999998
Q ss_pred CCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcC
Q 001917 787 SIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAG 866 (996)
Q Consensus 787 ~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g 866 (996)
+||..+ . +.+.+.++.|.++|. .+.++ ++. +.- -+...++++..|
T Consensus 186 ---------~~l~~~-~-------------d~~~~a~~lf~~~r~--~~~p~--------f~~-~~~-~~~~i~~~~~~G 230 (865)
T 1l5j_A 186 ---------PDAWSR-P-------------DIPLHALAMLKNARE--GIEPD--------QPG-VVG-PIKQIEALQQKG 230 (865)
T ss_dssp ---------GGGGGT-T-------------SHHHHGGGTTCSCBT--TBCCS--------BTT-TBC-SHHHHHHHHTTS
T ss_pred ---------hhhhcC-C-------------CHHHHHHHHhhcccc--CCCcc--------ccc-ccc-chhhhhhhhcCC
Confidence 888432 2 334456777886661 11111 111 110 122346677776
Q ss_pred CceEEEeCCccCCCCchhhhhhcc-------------ccccceEEEecchhhhhhhhcccCccccccccccchhhhccCC
Q 001917 867 HGTIILAGAEYGSGSSRDWAAKGP-------------MLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLT 933 (996)
Q Consensus 867 ~~~IIVAG~nyG~GSSRE~Aak~~-------------~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~l~l~ 933 (996)
. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+|||+++ .+ .+.
T Consensus 231 ~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~--~l~ 302 (865)
T 1l5j_A 231 F-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VS--NLN 302 (865)
T ss_dssp S-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CT--TCC
T ss_pred C-EEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hh--hcC
Confidence 4 4899999999999999999999 9999 999999999999999999999999985 22 346
Q ss_pred CCeEEEEecCCccccCCCCCeEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001917 934 GHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 934 g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~ 994 (996)
.+++++||+.++ +|+ ...+|++ +.+.+ +++++++++++||++||+++|.+
T Consensus 303 ~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 303 MGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp TTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCEEEEECCCC--------EEE-EcCCCeEEEEEEe--CCHHHHHHHHcCChhhhhhcchH
Confidence 788999998752 333 2356655 66554 68899999999999999999875
No 6
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=1.5e-37 Score=323.42 Aligned_cols=182 Identities=21% Similarity=0.326 Sum_probs=135.7
Q ss_pred CCCCCCCCCCCCCCCCCc--ccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccc
Q 001917 747 EPPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARG 824 (996)
Q Consensus 747 ~pp~f~~~~~~~~~~~~i--~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg 824 (996)
-.|||+++.....+.+.+ ..++++.+.|||||||||||| +||+. +++++ |.++
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred cccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcchH----------HHhCc--CCHHH-------------HHHH
Confidence 358899888777666655 456899888999999999998 89974 55555 4799
Q ss_pred cccchhhhhhhcCCCCCCceeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchh
Q 001917 825 TFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFE 904 (996)
Q Consensus 825 ~F~n~r~~N~l~~g~~g~~t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~ 904 (996)
+|+|+|+.|+ +|.++|. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+
T Consensus 59 ~f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFA 122 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFG 122 (213)
T ss_dssp TTHHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBC
T ss_pred Hhhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHH
Confidence 9999999886 5654431 22222 35653 5899999999999999999999999999999999999
Q ss_pred hhhhhhcccCccccccccccchhhhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 905 RIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 905 RIhr~Nlvn~GILPL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
||||+||+|||||||+|++++..+.+....+++++||+.+ ++|+ ..+| ++.+.+ ++..++++.+|
T Consensus 123 rIF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~i---~~~~k~~l~~G 187 (213)
T 2hcu_A 123 DIHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFDI---DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECCC---CHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcEEeCHHHHHHHhccCCCCEEEEECCC--------CEEE--ECCc-eEEEeC---CHHHHHHHHcC
Confidence 9999999999999999976443332233678899999886 3444 3556 666653 78899999988
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=1.5e-37 Score=312.43 Aligned_cols=151 Identities=34% Similarity=0.547 Sum_probs=124.1
Q ss_pred eeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeecCC
Q 001917 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (996)
Q Consensus 770 L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~p~ 849 (996)
++++|||||||||+|| +||+ |.|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEEcCCCCChhccchH----------HHhC---------------CCCHHHHHHHhCCccC-----------------c-
Confidence 6799999999999998 6775 3466777888888765 1
Q ss_pred CcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchhhh
Q 001917 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 929 (996)
Q Consensus 850 ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~~~ 929 (996)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HH-
Confidence 12344443 4799999999999999999999999999999999999999999999999999996 23
Q ss_pred ccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHH
Q 001917 930 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNL 993 (996)
Q Consensus 930 l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~-f~~~~~~~t~~e~~~~~aGGiL~yv~rk~ 993 (996)
.++++++++||+.. | +| + +|++ |.+. ..++.+++++++||+|||+++++
T Consensus 109 -~l~~gd~i~idl~~-------~-~v--~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EV--R--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRG 158 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EE--E--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSC
T ss_pred -HcCCCcEEEEEccC-------C-EE--E--CCcEEEEEE--cCCHHHHHHHHcCCHHHHHHHHH
Confidence 45788999998764 2 33 2 5655 6652 35999999999999999999976
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.7e-35 Score=296.23 Aligned_cols=158 Identities=27% Similarity=0.476 Sum_probs=127.0
Q ss_pred eEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceeec
Q 001917 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (996)
Q Consensus 768 ~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~~ 847 (996)
+++ ++|||||||+|+|| +||+. .|.+.+.+..|.++|
T Consensus 8 ~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~----------------- 44 (176)
T 3vba_A 8 RVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD----------------- 44 (176)
T ss_dssp EEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC-----------------
T ss_pred EEE-EeCCCcchhhcCcH----------HHhCc---------------CCHHHHHHhhCcCCC-----------------
Confidence 454 88999999999998 88752 355667888888775
Q ss_pred CCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccchh
Q 001917 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDA 927 (996)
Q Consensus 848 p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~~ 927 (996)
|+ .+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++ +++
T Consensus 45 p~--------F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~~ 111 (176)
T 3vba_A 45 PD--------FPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GIS 111 (176)
T ss_dssp TT--------HHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--THH
T ss_pred cc--------HHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hHH
Confidence 21 2356653 4799999999999999999999999999999999999999999999999888876 233
Q ss_pred hhccCCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHHh
Q 001917 928 DSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 994 (996)
Q Consensus 928 ~~l~l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~rk~~ 994 (996)
+. +..+++++||+.+ ++|+. ..+|+++.+. . .++.+++++++||++||++++..
T Consensus 112 ~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~-~-l~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 112 EK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQ-K-LPEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECC-C-CCHHHHHHHHHTSHHHHHHHHHH
T ss_pred Hh--cCCCCEEEEECCC--------CEEEe-CCCCeEEEEe-c-CCHHHHHHHHcCCHHHHHHHhcc
Confidence 43 5678889999764 23332 3567888766 2 48999999999999999999864
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=99.97 E-value=3.4e-32 Score=280.72 Aligned_cols=164 Identities=24% Similarity=0.348 Sum_probs=122.7
Q ss_pred cccceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCc
Q 001917 764 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPK 843 (996)
Q Consensus 764 i~~a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~ 843 (996)
+++ +++.+-+||||||+|+|+ +||+. +++++| .+++|.++|+.. +|.+.+.
T Consensus 10 ~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~~ 60 (203)
T 3q3w_A 10 HKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVLN 60 (203)
T ss_dssp EEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSBC
T ss_pred EEE-EEEECCCcccChhhcchH----------HHcCc--CCHHHH-------------HHhhhhhhhccc---cCCCCCC
Confidence 444 565566699999999998 99874 555554 678999999632 2222101
Q ss_pred eeecCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccc
Q 001917 844 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKA 923 (996)
Q Consensus 844 t~~~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~ 923 (996)
| .++.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++
T Consensus 61 ----p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~ 128 (203)
T 3q3w_A 61 ----M----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAK 128 (203)
T ss_dssp ----T----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCH
T ss_pred ----C----Chhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCH
Confidence 1 244443 44654 47999999999999999999999999999999999999999999999999999976
Q ss_pred cchhhhc-c---CCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 924 GEDADSL-G---LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 924 ~~~~~~l-~---l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
... +.| . ...+++++||+.. ++|+ . +|+++.+.+ ++...+.+.+|
T Consensus 129 ~~~-~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 129 DEV-LEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHH-HHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHH-HHHHHHhhcCCCCEEEEECCC--------CEEE--E-CCEEEEEEe---CHHHHHHHHcC
Confidence 432 222 1 1467889999986 3343 2 577777764 68888888887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.97 E-value=1.5e-31 Score=269.41 Aligned_cols=154 Identities=23% Similarity=0.329 Sum_probs=117.8
Q ss_pred ceEeeecCCCccccccccCCCCCCCChHhhHHHHcCCCcccCcccccCCCChhhhccccccchhhhhhhcCCCCCCceee
Q 001917 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (996)
Q Consensus 767 a~~L~~lGD~itTDhIsPaG~I~~~spag~yL~~~g~~~~~fnsygsrRgN~evm~rg~F~n~r~~N~l~~g~~g~~t~~ 846 (996)
.+++.+.|||||||+|+|+ +||+. ++++ .|.+++|.++|..
T Consensus 12 G~~~~l~~dnIdTD~IiPa----------~~L~~--~~~~-------------~l~~~~f~~~R~~-------------- 52 (171)
T 3h5j_A 12 GIGVPLRRSNVDTDQIIPA----------VFLKR--VTRT-------------GFEDGLFAGWRSD-------------- 52 (171)
T ss_dssp EEEEEECCCSCCHHHHSCG----------GGTTC--CSCS-------------CCGGGTTTTGGGS--------------
T ss_pred EEEEEccCCccCcccCCch----------hhcCC--CCHH-------------HHHHHhhccCcCC--------------
Confidence 3678888999999999998 89874 3333 4568899998721
Q ss_pred cCCCcccchhhhHHHHHHcCCceEEEeCCccCCCCchhhhhhccccccceEEEecchhhhhhhhcccCccccccccccch
Q 001917 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVIKAVIAKSFERIHRSNLVGMGIIPLCFKAGED 926 (996)
Q Consensus 847 ~p~ge~~~v~daA~~y~~~g~~~IIVAG~nyG~GSSRE~Aak~~~~lGVrAVIA~SF~RIhr~Nlvn~GILPL~f~~~~~ 926 (996)
|+ ++.++ .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||++++...
T Consensus 53 -p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~~~ 123 (171)
T 3h5j_A 53 -PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQDDV 123 (171)
T ss_dssp -TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHHHH
T ss_pred -cC----ccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHHHH
Confidence 11 22222 35653 37999999999999999999999999999999999999999999999999999985432
Q ss_pred hhhc-c---CCCCeEEEEecCCccccCCCCCeEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 001917 927 ADSL-G---LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 983 (996)
Q Consensus 927 ~~~l-~---l~g~e~~~Idl~~~~~~l~pg~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 983 (996)
+.| . ...+++++||+.. ++|+ . +|+++.+.+ .+...+.|.+|
T Consensus 124 -~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 124 -ELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp -HHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred -HHHHHHhhcCCCcEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHhC
Confidence 222 1 1567889999886 2343 2 567777665 67777777776
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.46 E-value=18 Score=34.04 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=26.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---..| ||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTym-AaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTFM-AADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHHH-HHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHHH-HHHHHHHHHHHCCCeEE
Confidence 6789999999776655 77888899999998877
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=39.70 E-value=18 Score=33.96 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.3
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---.. +||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHTY-MAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 688999999976654 477888899999998877
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=31.71 E-value=23 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.1
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|---.. .||..|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTy-MAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTF-MAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHH-HHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 788999999976665 477888888888998877
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=28.00 E-value=29 Score=32.54 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=26.9
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 001917 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (996)
Q Consensus 533 ~a~IgSCTN~s~~dl~~AA~lLak~A~~kG~kV~ 566 (996)
+++|++|.+|--...| ||+.|-+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTym-AAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTYM-AAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHHH-HHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHHH-HHHHHHHHHHHCCCEEE
Confidence 6789999999776655 67778888888998876
Done!