BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001918
(996 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 160 SCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFG 219
S DVF+ G + + F + L L +G+ F D+ + + +A++ S F
Sbjct: 11 SYDVFLSFRG-EDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFA 69
Query: 220 VVILTRKSFRNPYSIEELRYFSG-----KKNLVPIFFDLSPGDCLVRDIVEKRGELWEKN 274
+V+ + + + + EL K+ ++PIF+D+ P VR+ E + +E++
Sbjct: 70 IVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSH--VRNQKESFAKAFEEH 127
Query: 275 GGELWVLYGGLEKEWKEAVNGLSRVDEWKLEAQE-----GNCR-------DCILRAVTLL 322
E ++K+ V G+ R W++ E G+C DCI + V +
Sbjct: 128 -----------ETKYKDDVEGIQR---WRIALNEAANLKGSCDNRDKTDADCIRQIVDQI 173
Query: 323 AMKLGRRSV 331
+ KL + S+
Sbjct: 174 SSKLCKISL 182
>sp|P65953|RADA_MYCTU DNA repair protein RadA homolog OS=Mycobacterium tuberculosis
GN=radA PE=3 SV=1
Length = 480
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501
+ + GD G+GK+ LLLE A+R+ Q + L+V GE
Sbjct: 90 VTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGE 125
>sp|P65954|RADA_MYCBO DNA repair protein RadA homolog OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=radA PE=3 SV=1
Length = 480
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501
+ + GD G+GK+ LLLE A+R+ Q + L+V GE
Sbjct: 90 VTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGE 125
>sp|P60702|HPRK_STAAW HPr kinase/phosphorylase OS=Staphylococcus aureus (strain MW2)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|A8Z036|HPRK_STAAT HPr kinase/phosphorylase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q6GB70|HPRK_STAAS HPr kinase/phosphorylase OS=Staphylococcus aureus (strain MSSA476)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q6GIN1|HPRK_STAAR HPr kinase/phosphorylase OS=Staphylococcus aureus (strain MRSA252)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|P60701|HPRK_STAAN HPr kinase/phosphorylase OS=Staphylococcus aureus (strain N315)
GN=hprK PE=1 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|P60700|HPRK_STAAM HPr kinase/phosphorylase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=hprK PE=1 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|A6QF68|HPRK_STAAE HPr kinase/phosphorylase OS=Staphylococcus aureus (strain Newman)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q5HHQ8|HPRK_STAAC HPr kinase/phosphorylase OS=Staphylococcus aureus (strain COL)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q2YSG8|HPRK_STAAB HPr kinase/phosphorylase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|A5IQW4|HPRK_STAA9 HPr kinase/phosphorylase OS=Staphylococcus aureus (strain JH9)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q2G045|HPRK_STAA8 HPr kinase/phosphorylase OS=Staphylococcus aureus (strain NCTC
8325) GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q2FIN3|HPRK_STAA3 HPr kinase/phosphorylase OS=Staphylococcus aureus (strain USA300)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|A6TZN9|HPRK_STAA2 HPr kinase/phosphorylase OS=Staphylococcus aureus (strain JH1)
GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|A7WZQ8|HPRK_STAA1 HPr kinase/phosphorylase OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=hprK PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507
+YG G+ +TGDSGIGK+E LE R H+ V ++ IRQ
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR------LVADDNVEIRQ 181
>sp|Q92F42|RADA_LISIN DNA repair protein RadA homolog OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=radA PE=3 SV=1
Length = 457
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 402 SLEERRKERQW--EGGSRKGKEPVVWKESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTK 459
+LE +K R G P+ SE+E ++ T P+ + G P +
Sbjct: 38 ALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVE-TNMPELNRVLGGGVVP----GSM 92
Query: 460 ILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510
+L G GD GIGK+ LLL+ + + K VL++ GE I+Q L
Sbjct: 93 VLVG-------GDPGIGKSTLLLQVSAQLTLTNKKVLYISGEES-IKQTKL 135
>sp|Q93TM7|HPRK_LACBA HPr kinase/phosphorylase OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=hprK PE=3 SV=1
Length = 311
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 145 IYGVGV-MITGDSGVGKSETALELVKRGHR 173
>sp|B3WCP4|HPRK_LACCB HPr kinase/phosphorylase OS=Lactobacillus casei (strain BL23)
GN=hprK PE=3 SV=1
Length = 319
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 146 IYGLGV-LITGDSGVGKSETALELVQRGHR 174
>sp|Q9RE09|HPRK_LACCA HPr kinase/phosphorylase OS=Lactobacillus casei GN=hprK PE=1 SV=1
Length = 319
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 146 IYGLGV-LITGDSGVGKSETALELVQRGHR 174
>sp|Q03AM8|HPRK_LACC3 HPr kinase/phosphorylase OS=Lactobacillus casei (strain ATCC 334)
GN=hprK PE=3 SV=1
Length = 319
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 146 IYGLGV-LITGDSGVGKSETALELVQRGHR 174
>sp|Q38YB1|HPRK_LACSS HPr kinase/phosphorylase OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=hprK PE=3 SV=1
Length = 313
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 146 IYGLGV-LITGDSGVGKSETALELVKRGHR 174
>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 OS=Solanum
demissum GN=R1B-12 PE=3 SV=2
Length = 1348
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 555 FLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV-----MNLEPLKLSYLSG 609
+L+++D++ E WDD + P + II++TR V ++ +PL L
Sbjct: 671 YLILVDDV-WENSAWDD--LRGCFPDVNNRSRIILTTRHHEVAKYASVHSDPLHLRMFGE 727
Query: 610 VEAMSLMQ----GSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAILSEL 655
E+ L++ G + P+ + LR I + GRL + + +V ILSE+
Sbjct: 728 DESWKLLEKKVFGEERCSPLLKNVGLR-IAKMCGRLPLSIVLVAGILSEM 776
>sp|Q88YK3|HPRK_LACPL HPr kinase/phosphorylase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=hprK PE=3 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSG+GK+E LE R H+
Sbjct: 146 IYGLGV-LITGDSGVGKSETALELVKRGHR 174
>sp|Q4L4I7|HPRK_STAHJ HPr kinase/phosphorylase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=hprK PE=3 SV=1
Length = 311
Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSGIGK+E LE R H+
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR 170
>sp|A2T310|MATK_ANGEV Maturase K OS=Angiopteris evecta GN=matK PE=3 SV=1
Length = 506
Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 491 RYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM 550
+Y WV ++++ N +SFL +GI +K + K E E C + KEL
Sbjct: 307 QYHFHCWVQPHRIFLKRFSRNSFSFLGYILGIRTRINKVQAKM--EDELPITCLITKELC 364
Query: 551 RNIPFLVIIDNL 562
IPFL+++++L
Sbjct: 365 PIIPFLLLVNSL 376
>sp|Q8CTE7|HPRK_STAES HPr kinase/phosphorylase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=hprK PE=3 SV=1
Length = 310
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSGIGK+E LE R H+
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR 170
>sp|Q5HQW8|HPRK_STAEQ HPr kinase/phosphorylase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=hprK PE=3 SV=1
Length = 310
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSGIGK+E LE R H+
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR 170
>sp|B9DJN0|HPRK_STACT HPr kinase/phosphorylase OS=Staphylococcus carnosus (strain TM300)
GN=hprK PE=3 SV=1
Length = 313
Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 461 LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490
+YG G+ +TGDSGIGK+E LE R H+
Sbjct: 142 VYGVGV-LITGDSGIGKSETALELVKRGHR 170
>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1
Length = 463
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 524 NCSDKSRI--KSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF 581
NCS R+ ++F Q A I R E MR P L+ +++ W DD V L
Sbjct: 34 NCSSIFRLGERTFTRQY-AHIYATRLEQMR--PLLIK----SAKQRWGDDIAVRKLCELQ 86
Query: 582 GGETHIIISTRLPRVMNLEPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641
GGE +I T L + M L+P L +S E +L+ + I++ D L ++E+++ R+
Sbjct: 87 GGEKCCVIGT-LFKSMELQPSILREIS--EEHNLLPQPARQKYISDSDEL-ILEDELQRI 142
Query: 642 TMGLA------VVGAILSEL 655
+ A V GA+L+ L
Sbjct: 143 KLEGATDVQQLVTGAVLAVL 162
>sp|Q6I570|CYT3_ORYSJ Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica
GN=Os05g0409300 PE=2 SV=1
Length = 184
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 765 KRSEAEASSMLLRFNIARSSTRQGY-IHFNDLVKLYARKRGVTGVAHAMVQAVISRGSIT 823
+R +AEA RF +A + QG + F +VK A+++ VTG H ++ V+ G +
Sbjct: 54 RREQAEAEDAA-RFAVAEYNKNQGAELEFARIVK--AKRQVVTGTLHDLMLEVVDSGKKS 110
Query: 824 HHSGHIWTACFLLF 837
+S +W +L F
Sbjct: 111 LYSAKVWVKPWLDF 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,859,344
Number of Sequences: 539616
Number of extensions: 15120563
Number of successful extensions: 43222
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 43010
Number of HSP's gapped (non-prelim): 242
length of query: 996
length of database: 191,569,459
effective HSP length: 127
effective length of query: 869
effective length of database: 123,038,227
effective search space: 106920219263
effective search space used: 106920219263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)