Query 001918
Match_columns 996
No_of_seqs 559 out of 3511
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 12:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.3E-77 9.2E-82 770.2 40.4 477 150-805 2-503 (1153)
2 PLN03194 putative disease resi 100.0 8.1E-44 1.8E-48 355.0 14.8 157 154-326 20-177 (187)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-29 5.4E-34 279.0 20.4 260 437-733 1-274 (287)
4 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-27 5.2E-32 293.7 25.6 314 435-805 161-496 (889)
5 PRK04841 transcriptional regul 99.8 4.3E-16 9.4E-21 199.9 43.9 303 430-804 12-332 (903)
6 PF01582 TIR: TIR domain; Int 99.7 9.3E-19 2E-23 173.6 4.6 105 163-271 1-116 (141)
7 smart00255 TIR Toll - interleu 99.7 2.4E-16 5.2E-21 155.8 9.0 109 160-273 1-116 (140)
8 COG2909 MalT ATP-dependent tra 99.6 1.6E-11 3.4E-16 146.4 40.2 307 428-806 15-340 (894)
9 PF13676 TIR_2: TIR domain; PD 99.2 5E-12 1.1E-16 118.0 3.0 86 163-252 1-87 (102)
10 PF05729 NACHT: NACHT domain 99.1 1.1E-09 2.5E-14 110.5 12.4 142 465-620 1-163 (166)
11 PRK00411 cdc6 cell division co 99.0 5.4E-08 1.2E-12 113.4 26.3 202 432-650 30-257 (394)
12 COG3903 Predicted ATPase [Gene 99.0 7.7E-10 1.7E-14 123.5 9.4 215 465-703 15-239 (414)
13 PF01637 Arch_ATPase: Archaeal 99.0 2.3E-09 5E-14 114.5 10.3 201 434-647 1-233 (234)
14 TIGR03015 pepcterm_ATPase puta 98.9 4.4E-08 9.4E-13 107.9 20.0 175 464-652 43-242 (269)
15 TIGR02928 orc1/cdc6 family rep 98.9 3.1E-07 6.8E-12 105.8 27.1 196 433-647 16-246 (365)
16 PRK00080 ruvB Holliday junctio 98.8 8.8E-08 1.9E-12 108.8 18.3 196 428-649 21-223 (328)
17 TIGR00635 ruvB Holliday juncti 98.8 6.5E-08 1.4E-12 108.7 16.9 193 432-650 4-203 (305)
18 COG3899 Predicted ATPase [Gene 98.8 3E-06 6.4E-11 107.1 32.9 327 434-813 2-395 (849)
19 PF13374 TPR_10: Tetratricopep 98.7 2E-08 4.4E-13 77.2 4.6 42 931-972 1-42 (42)
20 PF13424 TPR_12: Tetratricopep 98.6 1.2E-07 2.7E-12 83.6 6.4 62 928-990 1-62 (78)
21 COG2256 MGS1 ATPase related to 98.5 3.7E-06 8E-11 93.9 19.0 138 467-641 51-205 (436)
22 PF13401 AAA_22: AAA domain; P 98.5 8.3E-07 1.8E-11 86.3 10.0 114 465-593 5-125 (131)
23 PRK07003 DNA polymerase III su 98.4 1E-05 2.2E-10 98.0 19.9 201 429-649 13-222 (830)
24 PTZ00202 tuzin; Provisional 98.4 1.3E-05 2.8E-10 91.1 19.2 165 426-620 256-434 (550)
25 PF13173 AAA_14: AAA domain 98.3 2.2E-06 4.7E-11 83.6 10.0 114 465-611 3-126 (128)
26 TIGR03420 DnaA_homol_Hda DnaA 98.3 1.7E-05 3.8E-10 84.8 16.3 149 465-650 39-203 (226)
27 PRK13342 recombination factor 98.3 9E-06 2E-10 95.3 15.0 165 466-667 38-217 (413)
28 PRK06893 DNA replication initi 98.3 1.4E-05 3E-10 86.1 14.8 143 465-646 40-201 (229)
29 PF14516 AAA_35: AAA-like doma 98.3 0.00032 6.9E-09 79.8 26.4 195 465-667 32-258 (331)
30 PRK12323 DNA polymerase III su 98.2 1.9E-05 4.1E-10 94.5 16.4 194 429-649 13-227 (700)
31 PRK14949 DNA polymerase III su 98.2 1.3E-05 2.7E-10 98.9 14.6 196 430-648 14-221 (944)
32 PRK14961 DNA polymerase III su 98.2 4.3E-05 9.3E-10 88.0 18.3 191 430-643 14-215 (363)
33 PF13191 AAA_16: AAA ATPase do 98.2 5E-06 1.1E-10 85.7 9.1 52 433-492 1-52 (185)
34 TIGR00678 holB DNA polymerase 98.2 3.1E-05 6.6E-10 80.7 14.6 86 552-643 95-186 (188)
35 PRK12402 replication factor C 98.2 7.5E-05 1.6E-09 85.0 18.8 195 431-644 14-222 (337)
36 PRK08727 hypothetical protein; 98.2 4.3E-05 9.3E-10 82.5 15.8 140 466-642 43-198 (233)
37 PRK08691 DNA polymerase III su 98.2 4.7E-05 1E-09 92.2 17.3 217 429-666 13-241 (709)
38 PRK14960 DNA polymerase III su 98.1 2E-05 4.3E-10 94.6 13.9 193 430-642 13-213 (702)
39 PTZ00112 origin recognition co 98.1 3.5E-05 7.6E-10 93.8 16.0 173 432-622 755-951 (1164)
40 PRK14962 DNA polymerase III su 98.1 6.6E-05 1.4E-09 88.9 17.2 116 552-668 116-241 (472)
41 PRK14963 DNA polymerase III su 98.1 0.00013 2.8E-09 87.2 19.3 209 432-666 14-237 (504)
42 PRK07471 DNA polymerase III su 98.0 0.00012 2.7E-09 83.9 17.1 202 428-645 15-235 (365)
43 PRK07994 DNA polymerase III su 98.0 4.7E-05 1E-09 92.5 14.3 199 430-648 14-221 (647)
44 KOG1840 Kinesin light chain [C 98.0 2.3E-05 5E-10 92.5 11.2 68 923-990 274-341 (508)
45 TIGR01242 26Sp45 26S proteasom 98.0 6.6E-05 1.4E-09 86.6 14.8 147 466-642 158-328 (364)
46 cd00009 AAA The AAA+ (ATPases 98.0 3.9E-05 8.5E-10 74.8 11.0 37 465-501 20-56 (151)
47 COG1474 CDC6 Cdc6-related prot 98.0 0.0002 4.2E-09 82.2 18.1 142 467-621 45-204 (366)
48 PLN03025 replication factor C 98.0 6.7E-05 1.5E-09 84.9 13.9 170 429-642 10-194 (319)
49 PRK07764 DNA polymerase III su 98.0 0.00015 3.2E-09 91.0 17.9 212 431-667 14-244 (824)
50 PRK09087 hypothetical protein; 98.0 9.9E-05 2.2E-09 79.2 14.3 135 465-647 45-194 (226)
51 PRK14964 DNA polymerase III su 98.0 0.00016 3.6E-09 85.4 17.3 218 430-666 11-238 (491)
52 PRK14957 DNA polymerase III su 98.0 0.00011 2.3E-09 88.1 16.0 200 430-650 14-223 (546)
53 KOG1840 Kinesin light chain [C 98.0 2.8E-05 6.2E-10 91.7 10.8 90 870-990 210-299 (508)
54 PRK05564 DNA polymerase III su 98.0 0.00019 4E-09 81.1 16.8 145 465-645 27-187 (313)
55 PRK08084 DNA replication initi 98.0 0.00013 2.8E-09 79.0 14.8 142 466-645 47-206 (235)
56 PRK13341 recombination factor 98.0 4.3E-05 9.4E-10 94.5 12.2 140 466-642 54-211 (725)
57 KOG2028 ATPase related to the 97.9 0.00037 7.9E-09 76.8 17.5 170 466-670 164-369 (554)
58 PRK14956 DNA polymerase III su 97.9 0.00021 4.5E-09 83.7 16.8 215 430-666 16-243 (484)
59 PRK09112 DNA polymerase III su 97.9 0.00013 2.9E-09 83.2 15.0 200 428-645 19-237 (351)
60 PRK04195 replication factor C 97.9 9.6E-05 2.1E-09 88.5 14.2 177 428-643 10-197 (482)
61 PRK03992 proteasome-activating 97.9 5.6E-05 1.2E-09 87.8 11.9 176 432-642 131-337 (389)
62 PRK08903 DnaA regulatory inact 97.9 7.4E-05 1.6E-09 80.2 11.7 146 465-652 43-203 (227)
63 PRK06645 DNA polymerase III su 97.9 0.00017 3.6E-09 85.9 15.6 195 430-642 19-223 (507)
64 PRK00440 rfc replication facto 97.9 0.00018 3.9E-09 81.1 15.4 171 430-644 15-199 (319)
65 PRK14959 DNA polymerase III su 97.9 0.00026 5.6E-09 85.5 17.0 101 551-652 117-225 (624)
66 TIGR02397 dnaX_nterm DNA polym 97.9 0.00023 5E-09 81.7 16.1 191 432-646 14-216 (355)
67 PRK14951 DNA polymerase III su 97.9 0.00014 3E-09 88.3 14.8 190 430-642 14-219 (618)
68 PRK14969 DNA polymerase III su 97.9 0.00027 6E-09 85.1 17.2 211 431-666 15-241 (527)
69 PRK14958 DNA polymerase III su 97.9 0.00033 7.2E-09 83.9 17.7 211 430-668 14-243 (509)
70 PRK05642 DNA replication initi 97.9 0.00021 4.5E-09 77.3 14.4 141 466-645 47-205 (234)
71 PF00308 Bac_DnaA: Bacterial d 97.9 0.00022 4.8E-09 76.2 14.2 153 466-646 36-206 (219)
72 PRK14952 DNA polymerase III su 97.8 0.00044 9.6E-09 83.6 17.9 213 430-667 11-242 (584)
73 PRK05896 DNA polymerase III su 97.8 0.00036 7.7E-09 83.9 16.8 198 430-650 14-223 (605)
74 PRK07940 DNA polymerase III su 97.8 0.00034 7.4E-09 81.0 15.1 162 466-644 38-209 (394)
75 PRK14950 DNA polymerase III su 97.8 0.0038 8.2E-08 76.5 24.9 193 431-645 15-218 (585)
76 PHA02544 44 clamp loader, smal 97.8 0.00053 1.2E-08 77.4 16.3 147 430-619 19-172 (316)
77 PRK14954 DNA polymerase III su 97.8 0.0011 2.3E-08 81.0 19.7 193 431-647 15-228 (620)
78 PRK08116 hypothetical protein; 97.8 9.2E-05 2E-09 81.6 9.7 102 466-593 116-220 (268)
79 KOG3678 SARM protein (with ste 97.8 8E-05 1.7E-09 83.4 8.8 91 159-252 611-710 (832)
80 PRK14955 DNA polymerase III su 97.8 0.00021 4.4E-09 83.4 12.7 95 552-647 126-228 (397)
81 PRK09111 DNA polymerase III su 97.7 0.00049 1.1E-08 83.7 15.7 193 430-644 22-229 (598)
82 PRK14087 dnaA chromosomal repl 97.7 0.00053 1.2E-08 81.0 15.2 160 466-651 143-322 (450)
83 TIGR02639 ClpA ATP-dependent C 97.7 0.00033 7.1E-09 88.0 14.2 173 429-639 179-382 (731)
84 PRK12422 chromosomal replicati 97.7 0.00092 2E-08 78.9 16.9 148 466-641 143-306 (445)
85 PRK14970 DNA polymerase III su 97.7 0.0014 3.1E-08 75.7 18.2 170 430-643 15-204 (367)
86 PRK09376 rho transcription ter 97.7 0.00012 2.6E-09 83.1 8.6 98 463-565 169-268 (416)
87 PRK06305 DNA polymerase III su 97.6 0.00051 1.1E-08 81.2 14.0 196 431-649 16-224 (451)
88 TIGR00362 DnaA chromosomal rep 97.6 0.0011 2.4E-08 77.7 16.7 153 466-646 138-308 (405)
89 PRK14088 dnaA chromosomal repl 97.6 0.0013 2.7E-08 77.8 17.2 152 467-645 133-302 (440)
90 PRK05707 DNA polymerase III su 97.6 0.00089 1.9E-08 75.9 15.2 165 466-644 24-199 (328)
91 PRK00149 dnaA chromosomal repl 97.6 0.00087 1.9E-08 79.6 15.7 152 466-645 150-319 (450)
92 PRK14971 DNA polymerase III su 97.6 0.002 4.3E-08 79.0 18.4 212 432-666 17-243 (614)
93 cd01128 rho_factor Transcripti 97.6 0.00014 3.1E-09 78.9 7.5 94 466-565 18-115 (249)
94 TIGR03689 pup_AAA proteasome A 97.6 0.00036 7.8E-09 82.9 11.4 130 467-621 219-379 (512)
95 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0005 1.1E-08 87.3 13.4 177 428-642 183-390 (852)
96 TIGR02881 spore_V_K stage V sp 97.6 0.00029 6.2E-09 77.5 9.8 129 465-621 43-192 (261)
97 PF00004 AAA: ATPase family as 97.5 0.00064 1.4E-08 65.7 10.7 31 467-500 1-31 (132)
98 smart00382 AAA ATPases associa 97.5 0.00054 1.2E-08 66.0 10.2 89 466-567 4-92 (148)
99 PRK07133 DNA polymerase III su 97.5 0.0012 2.6E-08 81.0 15.1 194 430-649 16-221 (725)
100 COG1222 RPT1 ATP-dependent 26S 97.5 0.00054 1.2E-08 75.9 10.7 168 467-668 188-391 (406)
101 PRK14086 dnaA chromosomal repl 97.5 0.0025 5.4E-08 76.9 17.2 149 466-642 316-482 (617)
102 PRK08451 DNA polymerase III su 97.5 0.0018 3.8E-08 77.5 15.8 91 552-643 116-213 (535)
103 PRK14953 DNA polymerase III su 97.5 0.0018 4E-08 77.1 15.9 187 432-643 16-215 (486)
104 PF05496 RuvB_N: Holliday junc 97.5 0.00053 1.1E-08 72.3 9.9 166 428-643 20-216 (233)
105 PTZ00454 26S protease regulato 97.5 0.00067 1.5E-08 78.8 11.5 148 466-643 181-352 (398)
106 PRK14965 DNA polymerase III su 97.4 0.0025 5.4E-08 77.8 16.5 213 430-666 14-241 (576)
107 PRK05563 DNA polymerase III su 97.4 0.0054 1.2E-07 74.6 18.8 191 430-643 14-215 (559)
108 CHL00095 clpC Clp protease ATP 97.4 0.0016 3.5E-08 82.9 14.7 169 432-640 179-379 (821)
109 PTZ00361 26 proteosome regulat 97.4 0.0012 2.6E-08 77.3 12.5 147 466-642 219-389 (438)
110 PRK08181 transposase; Validate 97.4 0.00052 1.1E-08 75.4 8.8 100 466-593 108-208 (269)
111 PF13424 TPR_12: Tetratricopep 97.4 0.00085 1.8E-08 59.0 8.5 37 928-964 42-78 (78)
112 PRK12377 putative replication 97.4 0.0006 1.3E-08 74.0 8.8 99 466-592 103-204 (248)
113 COG3267 ExeA Type II secretory 97.3 0.0082 1.8E-07 64.1 16.5 170 463-650 50-247 (269)
114 PRK06620 hypothetical protein; 97.3 0.0029 6.2E-08 67.4 13.4 125 466-642 46-183 (214)
115 PRK06647 DNA polymerase III su 97.3 0.0038 8.2E-08 75.7 15.9 210 431-666 15-241 (563)
116 PF05621 TniB: Bacterial TniB 97.3 0.0024 5.1E-08 70.4 12.6 165 467-643 64-256 (302)
117 PRK14948 DNA polymerase III su 97.3 0.0058 1.3E-07 75.0 17.4 191 432-644 16-218 (620)
118 TIGR00767 rho transcription te 97.3 0.00078 1.7E-08 77.0 9.0 94 466-565 170-267 (415)
119 CHL00176 ftsH cell division pr 97.3 0.0038 8.2E-08 76.7 15.5 145 467-641 219-387 (638)
120 PRK11034 clpA ATP-dependent Cl 97.2 0.002 4.4E-08 80.4 12.8 153 431-621 185-363 (758)
121 PRK06526 transposase; Provisio 97.2 0.00068 1.5E-08 74.0 7.7 33 466-498 100-132 (254)
122 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0022 4.8E-08 81.9 13.4 156 430-621 171-350 (852)
123 KOG2543 Origin recognition com 97.2 0.0048 1E-07 69.1 13.9 171 431-621 5-194 (438)
124 PRK06921 hypothetical protein; 97.2 0.0013 2.8E-08 72.4 9.5 34 466-499 119-153 (266)
125 PRK10865 protein disaggregatio 97.2 0.0017 3.8E-08 82.6 11.7 155 429-621 175-355 (857)
126 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0077 1.7E-07 71.7 16.3 174 466-669 261-463 (489)
127 TIGR01241 FtsH_fam ATP-depende 97.2 0.0027 5.8E-08 76.4 12.6 146 467-642 91-260 (495)
128 TIGR02880 cbbX_cfxQ probable R 97.2 0.0042 9.1E-08 69.2 13.1 125 466-621 60-209 (284)
129 PRK04296 thymidine kinase; Pro 97.2 0.00085 1.8E-08 70.1 7.1 114 466-596 4-118 (190)
130 PRK08769 DNA polymerase III su 97.2 0.0073 1.6E-07 68.0 14.9 166 466-645 28-205 (319)
131 PRK07993 DNA polymerase III su 97.1 0.0067 1.5E-07 69.0 14.6 162 466-643 26-199 (334)
132 PRK09183 transposase/IS protei 97.1 0.0018 4E-08 71.0 9.6 34 466-499 104-137 (259)
133 TIGR02903 spore_lon_C ATP-depe 97.1 0.0069 1.5E-07 74.5 15.0 108 542-651 282-398 (615)
134 cd01120 RecA-like_NTPases RecA 97.1 0.0038 8.2E-08 62.3 10.6 37 467-503 2-38 (165)
135 TIGR01243 CDC48 AAA family ATP 97.1 0.0042 9.1E-08 78.4 13.4 147 466-642 489-657 (733)
136 PF01695 IstB_IS21: IstB-like 97.1 0.00064 1.4E-08 70.2 4.9 99 466-593 49-149 (178)
137 CHL00181 cbbX CbbX; Provisiona 97.0 0.0036 7.8E-08 69.7 10.9 126 466-621 61-210 (287)
138 PF10443 RNA12: RNA12 protein; 97.0 0.64 1.4E-05 53.8 28.8 114 554-668 149-297 (431)
139 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0027 5.9E-08 68.4 9.6 100 465-565 20-127 (235)
140 PLN00020 ribulose bisphosphate 97.0 0.011 2.4E-07 66.8 14.3 147 464-643 148-333 (413)
141 PF00448 SRP54: SRP54-type pro 97.0 0.0035 7.5E-08 65.8 9.8 56 465-520 2-59 (196)
142 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0063 1.4E-07 61.4 11.2 128 465-595 3-139 (159)
143 PRK08058 DNA polymerase III su 97.0 0.0093 2E-07 67.9 13.9 141 465-619 29-181 (329)
144 KOG0989 Replication factor C, 97.0 0.0056 1.2E-07 66.8 11.1 173 428-640 32-222 (346)
145 PRK07399 DNA polymerase III su 96.9 0.023 5E-07 64.1 16.2 165 465-647 27-220 (314)
146 cd01124 KaiC KaiC is a circadi 96.9 0.0027 6E-08 65.6 8.1 36 467-502 2-37 (187)
147 PRK07952 DNA replication prote 96.9 0.0037 8E-08 67.8 9.2 102 466-593 101-204 (244)
148 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0037 8E-08 68.5 9.2 100 463-565 69-175 (274)
149 PF08937 DUF1863: MTH538 TIR-l 96.9 0.0022 4.8E-08 62.7 6.8 88 161-250 1-106 (130)
150 COG1484 DnaC DNA replication p 96.9 0.0024 5.2E-08 69.8 7.7 99 467-593 108-208 (254)
151 PRK06835 DNA replication prote 96.9 0.0034 7.3E-08 71.1 9.0 101 466-593 185-288 (329)
152 PRK06871 DNA polymerase III su 96.9 0.016 3.4E-07 65.5 14.2 162 466-643 26-198 (325)
153 PRK12608 transcription termina 96.8 0.0067 1.5E-07 69.1 11.0 93 466-565 135-232 (380)
154 PRK08939 primosomal protein Dn 96.8 0.0041 9E-08 69.8 9.3 98 466-592 158-259 (306)
155 KOG0733 Nuclear AAA ATPase (VC 96.8 0.01 2.2E-07 69.8 12.5 125 467-621 548-693 (802)
156 KOG0730 AAA+-type ATPase [Post 96.7 0.0058 1.3E-07 72.7 9.9 148 465-642 469-637 (693)
157 TIGR02237 recomb_radB DNA repa 96.7 0.0071 1.5E-07 64.0 9.9 96 465-565 13-109 (209)
158 PF04665 Pox_A32: Poxvirus A32 96.7 0.008 1.7E-07 64.7 10.2 34 466-499 15-48 (241)
159 cd01393 recA_like RecA is a b 96.7 0.0074 1.6E-07 64.6 10.1 98 465-565 20-126 (226)
160 COG1066 Sms Predicted ATP-depe 96.7 0.0053 1.1E-07 69.5 8.9 87 465-565 94-180 (456)
161 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0078 1.7E-07 70.8 10.5 185 433-652 191-410 (802)
162 PF02562 PhoH: PhoH-like prote 96.7 0.0033 7.2E-08 66.1 6.8 113 465-593 20-155 (205)
163 PRK06067 flagellar accessory p 96.7 0.0094 2E-07 64.3 10.5 127 465-593 26-164 (234)
164 PRK10536 hypothetical protein; 96.7 0.0099 2.1E-07 64.4 10.4 37 555-595 178-214 (262)
165 PRK09361 radB DNA repair and r 96.7 0.0075 1.6E-07 64.6 9.4 37 465-501 24-60 (225)
166 PHA00729 NTP-binding motif con 96.6 0.0055 1.2E-07 65.2 8.0 24 466-489 19-42 (226)
167 COG0593 DnaA ATPase involved i 96.6 0.026 5.6E-07 65.1 14.0 174 466-668 115-312 (408)
168 TIGR01243 CDC48 AAA family ATP 96.6 0.013 2.7E-07 74.1 12.6 148 466-643 214-382 (733)
169 PF05673 DUF815: Protein of un 96.6 0.0079 1.7E-07 64.4 9.0 134 421-597 16-154 (249)
170 cd03115 SRP The signal recogni 96.6 0.02 4.4E-07 58.6 11.8 54 466-519 2-57 (173)
171 KOG2227 Pre-initiation complex 96.6 0.024 5.3E-07 65.1 13.1 172 430-622 148-340 (529)
172 PRK06090 DNA polymerase III su 96.6 0.047 1E-06 61.6 15.2 162 466-646 27-199 (319)
173 PRK09354 recA recombinase A; P 96.5 0.0087 1.9E-07 67.9 8.9 90 465-565 61-150 (349)
174 TIGR02012 tigrfam_recA protein 96.5 0.0066 1.4E-07 68.2 7.8 90 465-565 56-145 (321)
175 TIGR00602 rad24 checkpoint pro 96.5 0.023 4.9E-07 69.6 12.9 56 428-489 80-135 (637)
176 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.014 3E-07 64.1 10.0 100 465-564 37-142 (259)
177 cd00983 recA RecA is a bacter 96.4 0.0073 1.6E-07 67.9 7.9 90 465-565 56-145 (325)
178 COG1223 Predicted ATPase (AAA+ 96.4 0.011 2.3E-07 63.0 8.3 146 466-641 153-318 (368)
179 PF13176 TPR_7: Tetratricopept 96.4 0.0053 1.1E-07 45.7 4.5 32 934-965 1-32 (36)
180 PRK06964 DNA polymerase III su 96.4 0.07 1.5E-06 60.7 15.5 85 552-644 131-221 (342)
181 cd01121 Sms Sms (bacterial rad 96.4 0.0088 1.9E-07 68.9 8.4 88 465-565 83-170 (372)
182 PF06745 KaiC: KaiC; InterPro 96.4 0.006 1.3E-07 65.4 6.7 126 465-592 20-159 (226)
183 TIGR00708 cobA cob(I)alamin ad 96.3 0.026 5.7E-07 57.7 10.5 127 465-595 6-141 (173)
184 PRK08699 DNA polymerase III su 96.3 0.041 9E-07 62.4 13.2 84 553-644 113-202 (325)
185 PRK14974 cell division protein 96.3 0.038 8.2E-07 62.7 12.7 92 464-565 140-234 (336)
186 PF13207 AAA_17: AAA domain; P 96.3 0.0033 7.2E-08 60.1 3.6 23 466-488 1-23 (121)
187 COG0470 HolB ATPase involved i 96.3 0.028 6.1E-07 63.4 11.8 26 466-491 26-51 (325)
188 PRK11889 flhF flagellar biosyn 96.3 0.023 4.9E-07 65.1 10.4 57 464-520 241-299 (436)
189 TIGR02238 recomb_DMC1 meiotic 96.2 0.022 4.7E-07 64.2 10.2 98 465-564 97-202 (313)
190 KOG4626 O-linked N-acetylgluco 96.2 0.014 3.1E-07 68.3 8.7 53 930-990 386-438 (966)
191 cd01131 PilT Pilus retraction 96.2 0.0077 1.7E-07 63.4 6.0 106 465-593 2-108 (198)
192 TIGR02639 ClpA ATP-dependent C 96.2 0.025 5.4E-07 71.3 11.5 81 465-565 485-565 (731)
193 KOG0735 AAA+-type ATPase [Post 96.2 0.057 1.2E-06 64.8 13.5 159 464-649 431-617 (952)
194 PRK10733 hflB ATP-dependent me 96.2 0.021 4.6E-07 70.7 10.7 145 467-641 188-356 (644)
195 cd01394 radB RadB. The archaea 96.2 0.022 4.7E-07 60.7 9.5 39 465-503 20-58 (218)
196 TIGR03499 FlhF flagellar biosy 96.2 0.027 5.9E-07 62.6 10.5 57 464-520 194-254 (282)
197 PRK08118 topology modulation p 96.2 0.006 1.3E-07 62.3 4.8 33 466-498 3-38 (167)
198 PRK12726 flagellar biosynthesi 96.2 0.03 6.5E-07 63.9 10.7 89 463-564 205-296 (407)
199 PF13177 DNA_pol3_delta2: DNA 96.1 0.039 8.5E-07 56.1 10.7 132 466-608 21-162 (162)
200 PRK04132 replication factor C 96.1 0.051 1.1E-06 68.4 13.7 146 469-643 569-726 (846)
201 PRK04301 radA DNA repair and r 96.1 0.026 5.7E-07 63.9 10.1 98 465-564 103-209 (317)
202 PRK08533 flagellar accessory p 96.1 0.035 7.6E-07 59.8 10.5 52 465-518 25-76 (230)
203 COG1373 Predicted ATPase (AAA+ 96.1 0.056 1.2E-06 63.1 13.0 115 466-617 39-164 (398)
204 PRK00771 signal recognition pa 96.1 0.03 6.5E-07 65.8 10.7 90 464-564 95-186 (437)
205 TIGR00763 lon ATP-dependent pr 96.1 0.023 5.1E-07 72.0 10.5 28 465-492 348-375 (775)
206 TIGR00064 ftsY signal recognit 96.0 0.044 9.5E-07 60.6 11.0 92 464-565 72-166 (272)
207 PRK14722 flhF flagellar biosyn 96.0 0.026 5.6E-07 64.8 9.3 58 464-521 137-198 (374)
208 PRK13695 putative NTPase; Prov 96.0 0.036 7.9E-07 56.8 9.6 32 467-498 3-35 (174)
209 PRK10867 signal recognition pa 95.9 0.037 8E-07 64.9 10.4 92 464-564 100-194 (433)
210 PF08423 Rad51: Rad51; InterP 95.9 0.035 7.5E-07 60.9 9.6 100 465-565 39-145 (256)
211 PRK12723 flagellar biosynthesi 95.9 0.065 1.4E-06 62.1 12.2 87 464-565 174-266 (388)
212 cd03228 ABCC_MRP_Like The MRP 95.9 0.032 6.9E-07 57.1 8.6 129 465-596 29-157 (171)
213 PF13481 AAA_25: AAA domain; P 95.9 0.013 2.9E-07 60.9 5.9 38 466-503 34-81 (193)
214 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.028 6E-07 60.2 8.4 39 465-503 17-55 (224)
215 PRK11331 5-methylcytosine-spec 95.8 0.02 4.3E-07 66.8 7.5 38 466-503 196-235 (459)
216 TIGR02640 gas_vesic_GvpN gas v 95.8 0.069 1.5E-06 58.8 11.6 24 466-489 23-46 (262)
217 TIGR02236 recomb_radA DNA repa 95.8 0.04 8.6E-07 62.2 9.9 53 465-518 96-155 (310)
218 KOG1514 Origin recognition com 95.8 0.27 5.8E-06 59.4 16.8 137 433-592 397-547 (767)
219 cd03247 ABCC_cytochrome_bd The 95.8 0.026 5.6E-07 58.2 7.7 127 465-596 29-159 (178)
220 PF00154 RecA: recA bacterial 95.8 0.03 6.6E-07 62.9 8.6 90 465-565 54-143 (322)
221 PLN03187 meiotic recombination 95.8 0.045 9.7E-07 62.3 10.1 96 465-564 127-232 (344)
222 PF13671 AAA_33: AAA domain; P 95.8 0.05 1.1E-06 53.5 9.3 24 466-489 1-24 (143)
223 TIGR03346 chaperone_ClpB ATP-d 95.8 0.029 6.2E-07 71.9 9.4 67 432-501 565-632 (852)
224 PF01583 APS_kinase: Adenylyls 95.7 0.012 2.5E-07 59.3 4.5 35 466-500 4-38 (156)
225 cd03216 ABC_Carb_Monos_I This 95.7 0.026 5.7E-07 57.3 7.3 116 465-595 27-143 (163)
226 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.069 1.5E-06 57.3 10.9 38 465-502 21-58 (229)
227 PRK05541 adenylylsulfate kinas 95.7 0.013 2.7E-07 60.3 4.9 34 466-499 9-42 (176)
228 TIGR01425 SRP54_euk signal rec 95.7 0.048 1E-06 63.7 10.1 56 464-519 100-157 (429)
229 PRK11823 DNA repair protein Ra 95.7 0.025 5.5E-07 66.9 8.0 88 465-565 81-168 (446)
230 KOG0741 AAA+-type ATPase [Post 95.7 0.14 3.1E-06 59.6 13.4 124 465-620 539-686 (744)
231 TIGR03345 VI_ClpV1 type VI sec 95.7 0.033 7.1E-07 71.1 9.4 85 464-565 596-680 (852)
232 COG0464 SpoVK ATPases of the A 95.7 0.044 9.6E-07 66.0 10.1 145 466-640 278-445 (494)
233 TIGR02655 circ_KaiC circadian 95.7 0.033 7.1E-07 66.8 8.9 99 465-565 264-365 (484)
234 KOG0729 26S proteasome regulat 95.7 0.039 8.5E-07 58.8 8.2 67 466-565 213-282 (435)
235 PRK05703 flhF flagellar biosyn 95.6 0.059 1.3E-06 63.4 10.7 84 465-563 222-309 (424)
236 PRK04328 hypothetical protein; 95.6 0.046 9.9E-07 59.7 9.2 99 465-565 24-140 (249)
237 PF13604 AAA_30: AAA domain; P 95.6 0.044 9.4E-07 57.6 8.7 36 464-499 18-53 (196)
238 COG1618 Predicted nucleotide k 95.6 0.014 2.9E-07 58.2 4.4 33 466-498 7-41 (179)
239 PRK05986 cob(I)alamin adenolsy 95.6 0.091 2E-06 54.5 10.7 128 465-595 23-159 (191)
240 COG0466 Lon ATP-dependent Lon 95.6 0.054 1.2E-06 65.4 10.2 134 465-621 351-509 (782)
241 cd03230 ABC_DR_subfamily_A Thi 95.6 0.036 7.9E-07 56.8 7.9 127 465-596 27-157 (173)
242 cd01125 repA Hexameric Replica 95.6 0.081 1.8E-06 57.3 10.9 52 466-517 3-68 (239)
243 COG0467 RAD55 RecA-superfamily 95.6 0.057 1.2E-06 59.3 9.8 39 465-503 24-62 (260)
244 cd03246 ABCC_Protease_Secretio 95.6 0.04 8.7E-07 56.5 8.1 128 465-596 29-158 (173)
245 COG2255 RuvB Holliday junction 95.6 0.082 1.8E-06 57.4 10.4 59 585-643 153-218 (332)
246 TIGR00959 ffh signal recogniti 95.6 0.073 1.6E-06 62.4 11.1 92 464-564 99-193 (428)
247 cd03229 ABC_Class3 This class 95.6 0.041 8.9E-07 56.7 8.1 130 465-596 27-163 (178)
248 TIGR00416 sms DNA repair prote 95.6 0.027 5.9E-07 66.7 7.6 88 465-565 95-182 (454)
249 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.051 1.1E-06 58.8 9.1 38 465-502 22-59 (237)
250 PRK10865 protein disaggregatio 95.5 0.048 1E-06 69.7 10.2 66 432-500 568-634 (857)
251 PRK07261 topology modulation p 95.5 0.023 5.1E-07 58.2 6.1 23 466-488 2-24 (171)
252 cd03214 ABC_Iron-Siderophores_ 95.5 0.055 1.2E-06 55.9 8.9 124 465-596 26-160 (180)
253 PLN03186 DNA repair protein RA 95.5 0.06 1.3E-06 61.4 9.8 96 465-564 124-229 (342)
254 PRK12724 flagellar biosynthesi 95.5 0.065 1.4E-06 62.1 10.0 55 465-519 224-281 (432)
255 cd01122 GP4d_helicase GP4d_hel 95.5 0.07 1.5E-06 58.8 10.1 39 465-503 31-70 (271)
256 PRK15179 Vi polysaccharide bio 95.5 0.094 2E-06 65.3 12.1 50 932-989 154-203 (694)
257 KOG0731 AAA+-type ATPase conta 95.4 0.085 1.8E-06 64.9 11.2 162 447-644 332-520 (774)
258 cd00544 CobU Adenosylcobinamid 95.4 0.013 2.9E-07 59.9 3.8 32 467-501 2-33 (169)
259 PRK14721 flhF flagellar biosyn 95.3 0.12 2.7E-06 60.2 11.8 57 464-520 191-251 (420)
260 PRK12727 flagellar biosynthesi 95.3 0.06 1.3E-06 64.0 9.2 86 464-564 350-439 (559)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.048 1E-06 54.2 7.4 102 465-595 27-128 (144)
262 TIGR02858 spore_III_AA stage I 95.3 0.055 1.2E-06 59.7 8.4 119 466-596 113-231 (270)
263 PF13238 AAA_18: AAA domain; P 95.3 0.014 3.1E-07 56.0 3.4 22 467-488 1-22 (129)
264 KOG2004 Mitochondrial ATP-depe 95.3 0.053 1.2E-06 65.2 8.6 135 464-621 438-597 (906)
265 PRK12597 F0F1 ATP synthase sub 95.2 0.086 1.9E-06 62.1 10.2 98 466-565 145-249 (461)
266 PRK09519 recA DNA recombinatio 95.2 0.068 1.5E-06 66.6 9.6 90 465-565 61-150 (790)
267 PRK05800 cobU adenosylcobinami 95.2 0.0085 1.8E-07 61.4 1.6 23 466-488 3-25 (170)
268 PF08433 KTI12: Chromatin asso 95.2 0.058 1.3E-06 59.5 8.2 81 466-566 3-83 (270)
269 PRK09302 circadian clock prote 95.2 0.076 1.6E-06 64.3 9.9 127 465-593 274-408 (509)
270 TIGR02655 circ_KaiC circadian 95.1 0.074 1.6E-06 63.8 9.5 128 465-594 22-167 (484)
271 KOG0735 AAA+-type ATPase [Post 95.1 0.14 3E-06 61.7 11.3 148 467-644 704-872 (952)
272 KOG0728 26S proteasome regulat 95.1 0.2 4.4E-06 53.1 11.3 164 424-621 138-332 (404)
273 PRK10416 signal recognition pa 95.1 0.13 2.7E-06 58.3 10.7 92 464-565 114-208 (318)
274 COG0542 clpA ATP-binding subun 95.1 0.047 1E-06 67.5 7.8 154 430-621 168-347 (786)
275 COG1102 Cmk Cytidylate kinase 95.1 0.026 5.6E-07 56.3 4.5 46 466-521 2-47 (179)
276 PTZ00035 Rad51 protein; Provis 95.1 0.1 2.2E-06 59.6 10.0 95 465-564 119-224 (337)
277 cd01135 V_A-ATPase_B V/A-type 95.1 0.1 2.2E-06 57.3 9.5 100 463-565 69-178 (276)
278 PF07726 AAA_3: ATPase family 95.0 0.012 2.6E-07 56.9 1.9 29 467-495 2-30 (131)
279 COG0468 RecA RecA/RadA recombi 95.0 0.13 2.8E-06 56.7 10.1 40 464-503 60-99 (279)
280 TIGR03574 selen_PSTK L-seryl-t 95.0 0.11 2.4E-06 56.7 9.6 33 466-498 1-33 (249)
281 PRK00889 adenylylsulfate kinas 95.0 0.038 8.2E-07 56.7 5.6 36 465-500 5-40 (175)
282 COG1419 FlhF Flagellar GTP-bin 95.0 0.12 2.6E-06 59.2 10.0 59 464-522 203-265 (407)
283 PF00485 PRK: Phosphoribulokin 95.0 0.022 4.7E-07 59.6 3.9 26 466-491 1-26 (194)
284 COG1117 PstB ABC-type phosphat 94.9 0.17 3.7E-06 53.0 10.0 57 463-520 32-94 (253)
285 cd00984 DnaB_C DnaB helicase C 94.9 0.12 2.6E-06 55.9 9.7 39 465-503 14-53 (242)
286 KOG1969 DNA replication checkp 94.9 0.062 1.4E-06 64.8 7.8 38 463-503 325-362 (877)
287 PRK10787 DNA-binding ATP-depen 94.9 0.082 1.8E-06 66.8 9.3 133 465-620 350-506 (784)
288 COG0541 Ffh Signal recognition 94.9 1 2.2E-05 52.1 16.9 57 465-521 101-159 (451)
289 PRK07132 DNA polymerase III su 94.9 0.67 1.5E-05 51.9 15.5 145 465-647 19-184 (299)
290 KOG0744 AAA+-type ATPase [Post 94.9 0.059 1.3E-06 59.3 6.8 36 464-499 177-216 (423)
291 TIGR02239 recomb_RAD51 DNA rep 94.9 0.11 2.3E-06 58.9 9.2 96 465-565 97-203 (316)
292 cd03238 ABC_UvrA The excision 94.8 0.15 3.3E-06 52.6 9.6 22 465-486 22-43 (176)
293 PF13428 TPR_14: Tetratricopep 94.8 0.071 1.5E-06 41.4 5.5 40 934-981 3-42 (44)
294 KOG0736 Peroxisome assembly fa 94.8 0.22 4.7E-06 60.7 11.9 69 467-565 708-776 (953)
295 PRK11034 clpA ATP-dependent Cl 94.8 0.094 2E-06 65.9 9.4 81 465-565 489-569 (758)
296 cd02019 NK Nucleoside/nucleoti 94.8 0.04 8.6E-07 47.5 4.4 23 466-488 1-23 (69)
297 CHL00095 clpC Clp protease ATP 94.7 0.081 1.7E-06 67.7 8.8 84 465-565 540-623 (821)
298 PRK03839 putative kinase; Prov 94.7 0.025 5.4E-07 58.4 3.5 24 466-489 2-25 (180)
299 cd03223 ABCD_peroxisomal_ALDP 94.7 0.18 3.9E-06 51.4 9.7 117 465-596 28-150 (166)
300 KOG4626 O-linked N-acetylgluco 94.7 0.073 1.6E-06 62.7 7.3 55 928-990 418-472 (966)
301 cd01132 F1_ATPase_alpha F1 ATP 94.7 0.18 3.9E-06 55.4 10.0 98 463-565 69-173 (274)
302 TIGR02902 spore_lonB ATP-depen 94.7 0.29 6.4E-06 59.4 12.9 45 432-487 65-109 (531)
303 PRK06995 flhF flagellar biosyn 94.7 0.088 1.9E-06 62.4 8.2 56 465-520 257-316 (484)
304 COG2812 DnaX DNA polymerase II 94.6 0.4 8.7E-06 57.2 13.5 113 552-668 118-243 (515)
305 cd03215 ABC_Carb_Monos_II This 94.6 0.087 1.9E-06 54.5 7.3 128 465-595 27-165 (182)
306 PRK13541 cytochrome c biogenes 94.6 0.27 5.9E-06 51.4 11.0 24 465-488 27-50 (195)
307 PRK06762 hypothetical protein; 94.6 0.032 7E-07 56.6 3.9 24 465-488 3-26 (166)
308 KOG0651 26S proteasome regulat 94.6 0.13 2.8E-06 56.4 8.5 125 464-621 166-317 (388)
309 KOG0991 Replication factor C, 94.5 0.23 5E-06 52.4 9.8 52 428-490 23-74 (333)
310 PRK09302 circadian clock prote 94.5 0.13 2.8E-06 62.2 9.6 125 465-593 32-176 (509)
311 PRK13539 cytochrome c biogenes 94.5 0.23 5.1E-06 52.4 10.3 57 551-607 143-201 (207)
312 PF00515 TPR_1: Tetratricopept 94.5 0.071 1.5E-06 38.7 4.5 31 932-962 1-31 (34)
313 PRK09280 F0F1 ATP synthase sub 94.5 0.17 3.7E-06 59.5 10.0 100 463-565 144-250 (463)
314 PF07728 AAA_5: AAA domain (dy 94.5 0.029 6.2E-07 55.1 3.1 22 467-488 2-23 (139)
315 COG0542 clpA ATP-binding subun 94.5 0.26 5.5E-06 61.2 11.8 83 465-565 522-605 (786)
316 PRK04040 adenylate kinase; Pro 94.5 0.04 8.6E-07 57.5 4.3 28 466-493 4-31 (188)
317 PF14532 Sigma54_activ_2: Sigm 94.4 0.033 7.2E-07 54.9 3.4 23 465-487 22-44 (138)
318 PRK06696 uridine kinase; Valid 94.4 0.057 1.2E-06 57.9 5.5 35 464-498 22-56 (223)
319 cd02027 APSK Adenosine 5'-phos 94.4 0.13 2.8E-06 51.5 7.7 34 466-499 1-34 (149)
320 KOG0743 AAA+-type ATPase [Post 94.4 0.88 1.9E-05 52.7 15.2 143 467-651 238-412 (457)
321 PF07719 TPR_2: Tetratricopept 94.4 0.075 1.6E-06 38.3 4.5 31 932-962 1-31 (34)
322 PF00006 ATP-synt_ab: ATP synt 94.4 0.14 3.1E-06 54.5 8.3 96 466-565 17-117 (215)
323 COG2607 Predicted ATPase (AAA+ 94.4 0.3 6.5E-06 52.0 10.3 115 422-579 50-165 (287)
324 PF00910 RNA_helicase: RNA hel 94.3 0.028 6E-07 53.0 2.5 26 467-492 1-26 (107)
325 PRK08233 hypothetical protein; 94.3 0.032 7E-07 57.3 3.3 25 465-489 4-28 (182)
326 PRK03846 adenylylsulfate kinas 94.3 0.06 1.3E-06 56.5 5.3 36 465-500 25-60 (198)
327 PRK00625 shikimate kinase; Pro 94.3 0.036 7.7E-07 57.0 3.4 23 467-489 3-25 (173)
328 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.19 4E-06 59.1 9.6 98 466-565 140-244 (449)
329 PRK07667 uridine kinase; Provi 94.2 0.064 1.4E-06 56.1 5.3 37 465-501 18-54 (193)
330 TIGR01039 atpD ATP synthase, F 94.2 0.22 4.7E-06 58.5 10.0 98 466-565 145-249 (461)
331 PRK08972 fliI flagellum-specif 94.2 0.13 2.8E-06 60.1 8.1 96 466-565 164-264 (444)
332 cd01136 ATPase_flagellum-secre 94.2 0.17 3.6E-06 57.2 8.8 99 465-565 70-171 (326)
333 cd03222 ABC_RNaseL_inhibitor T 94.1 0.074 1.6E-06 54.9 5.4 106 465-596 26-134 (177)
334 PRK13540 cytochrome c biogenes 94.1 0.33 7.2E-06 50.9 10.5 34 465-499 28-61 (200)
335 PRK14723 flhF flagellar biosyn 94.1 0.26 5.6E-06 61.4 10.9 56 465-520 186-245 (767)
336 PF07693 KAP_NTPase: KAP famil 94.1 0.4 8.7E-06 54.2 11.9 28 464-491 20-47 (325)
337 COG2019 AdkA Archaeal adenylat 94.1 0.16 3.5E-06 51.0 7.4 46 465-520 5-51 (189)
338 PTZ00301 uridine kinase; Provi 94.1 0.044 9.4E-07 58.2 3.7 28 465-492 4-31 (210)
339 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.088 1.9E-06 61.0 6.3 57 929-990 72-128 (453)
340 cd03232 ABC_PDR_domain2 The pl 94.1 0.17 3.7E-06 52.8 8.1 36 465-500 34-70 (192)
341 PRK13947 shikimate kinase; Pro 94.1 0.04 8.8E-07 56.1 3.3 26 467-492 4-29 (171)
342 PRK00131 aroK shikimate kinase 94.0 0.045 9.6E-07 55.7 3.5 24 466-489 6-29 (175)
343 PRK05480 uridine/cytidine kina 94.0 0.05 1.1E-06 57.6 4.0 24 465-488 7-30 (209)
344 KOG0738 AAA+-type ATPase [Post 93.9 0.33 7.2E-06 54.9 10.2 25 467-491 248-272 (491)
345 cd02028 UMPK_like Uridine mono 93.9 0.058 1.3E-06 55.8 4.2 34 466-499 1-34 (179)
346 COG3910 Predicted ATPase [Gene 93.9 0.33 7.2E-06 49.8 9.2 130 464-606 37-203 (233)
347 cd03213 ABCG_EPDR ABCG transpo 93.9 0.21 4.6E-06 52.2 8.4 126 465-595 36-172 (194)
348 COG0003 ArsA Predicted ATPase 93.9 0.096 2.1E-06 59.1 6.0 45 465-509 3-48 (322)
349 PF13245 AAA_19: Part of AAA d 93.9 0.12 2.7E-06 45.4 5.5 36 464-499 10-49 (76)
350 COG0563 Adk Adenylate kinase a 93.9 0.088 1.9E-06 54.4 5.3 22 467-488 3-24 (178)
351 PRK08149 ATP synthase SpaL; Va 93.8 0.18 4E-06 58.9 8.5 93 466-565 153-253 (428)
352 COG4133 CcmA ABC-type transpor 93.8 0.51 1.1E-05 48.6 10.5 33 466-498 30-62 (209)
353 PRK06217 hypothetical protein; 93.8 0.054 1.2E-06 56.1 3.7 24 466-489 3-26 (183)
354 KOG0734 AAA+-type ATPase conta 93.8 0.25 5.4E-06 57.8 9.1 124 467-623 340-487 (752)
355 COG4608 AppF ABC-type oligopep 93.8 0.21 4.5E-06 54.3 8.1 124 466-596 41-172 (268)
356 PRK05922 type III secretion sy 93.8 0.23 4.9E-06 58.2 9.0 97 466-565 159-259 (434)
357 cd03263 ABC_subfamily_A The AB 93.8 0.33 7.1E-06 51.7 9.7 23 465-487 29-51 (220)
358 cd00227 CPT Chloramphenicol (C 93.7 0.062 1.3E-06 55.2 4.0 26 465-490 3-28 (175)
359 COG1875 NYN ribonuclease and A 93.7 0.18 3.9E-06 56.6 7.7 37 553-593 351-387 (436)
360 TIGR01360 aden_kin_iso1 adenyl 93.7 0.058 1.3E-06 55.7 3.8 24 465-488 4-27 (188)
361 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.14 3.1E-06 54.5 6.8 22 465-486 30-51 (213)
362 COG1126 GlnQ ABC-type polar am 93.7 0.072 1.6E-06 55.8 4.3 53 465-518 29-81 (240)
363 TIGR03324 alt_F1F0_F1_al alter 93.7 0.31 6.8E-06 57.8 10.1 98 463-565 162-266 (497)
364 cd03237 ABC_RNaseL_inhibitor_d 93.7 0.26 5.6E-06 53.7 8.9 24 465-488 26-49 (246)
365 PRK06731 flhF flagellar biosyn 93.7 0.42 9.2E-06 52.7 10.6 88 465-565 76-166 (270)
366 PRK12678 transcription termina 93.7 0.16 3.5E-06 60.6 7.6 92 466-565 418-515 (672)
367 COG0529 CysC Adenylylsulfate k 93.6 0.11 2.3E-06 52.8 5.2 37 465-501 24-60 (197)
368 CHL00033 ycf3 photosystem I as 93.6 0.23 5E-06 50.5 7.9 56 930-985 111-166 (168)
369 PRK05973 replicative DNA helic 93.6 0.12 2.6E-06 55.8 6.0 37 466-502 66-102 (237)
370 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.6 0.37 8.1E-06 51.6 9.8 33 465-498 49-81 (224)
371 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.18 3.9E-06 50.7 7.0 116 465-596 26-142 (157)
372 PRK01184 hypothetical protein; 93.6 0.27 5.9E-06 50.7 8.5 21 466-487 3-23 (184)
373 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.051 1.1E-06 56.0 3.1 23 466-488 1-23 (183)
374 PRK11174 cysteine/glutathione 93.6 0.24 5.2E-06 61.1 9.4 34 465-500 377-410 (588)
375 TIGR02868 CydC thiol reductant 93.6 0.3 6.6E-06 59.3 10.2 34 465-499 362-395 (529)
376 CHL00059 atpA ATP synthase CF1 93.6 0.29 6.4E-06 57.7 9.5 99 463-565 141-245 (485)
377 TIGR00962 atpA proton transloc 93.5 0.33 7.2E-06 58.0 10.1 98 463-565 161-265 (501)
378 smart00763 AAA_PrkA PrkA AAA d 93.5 0.065 1.4E-06 61.0 3.9 52 433-490 52-104 (361)
379 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.15 3.2E-06 53.6 6.5 37 465-501 27-64 (200)
380 PF13414 TPR_11: TPR repeat; P 93.5 0.17 3.7E-06 43.0 5.7 49 932-988 3-51 (69)
381 PRK08927 fliI flagellum-specif 93.5 0.26 5.6E-06 57.8 8.9 97 465-565 159-260 (442)
382 cd03244 ABCC_MRP_domain2 Domai 93.5 0.38 8.2E-06 51.3 9.6 34 465-499 31-64 (221)
383 cd02020 CMPK Cytidine monophos 93.5 0.06 1.3E-06 53.0 3.2 24 466-489 1-24 (147)
384 TIGR01420 pilT_fam pilus retra 93.4 0.11 2.4E-06 59.5 5.8 85 465-565 123-207 (343)
385 TIGR00235 udk uridine kinase. 93.4 0.067 1.4E-06 56.6 3.6 25 465-489 7-31 (207)
386 cd03264 ABC_drug_resistance_li 93.4 0.44 9.6E-06 50.4 9.9 22 466-487 27-48 (211)
387 cd02025 PanK Pantothenate kina 93.4 0.094 2E-06 56.1 4.7 37 466-502 1-39 (220)
388 TIGR03522 GldA_ABC_ATP gliding 93.3 0.54 1.2E-05 52.9 10.9 23 465-487 29-51 (301)
389 PRK13343 F0F1 ATP synthase sub 93.3 0.37 8.1E-06 57.3 9.8 98 463-565 162-266 (502)
390 COG1136 SalX ABC-type antimicr 93.3 0.48 1E-05 50.6 9.8 65 540-605 148-216 (226)
391 PTZ00494 tuzin-like protein; P 93.2 2.9 6.4E-05 48.5 16.3 169 428-620 367-544 (664)
392 PRK06547 hypothetical protein; 93.2 0.09 2E-06 54.0 4.1 25 464-488 15-39 (172)
393 TIGR03496 FliI_clade1 flagella 93.2 0.24 5.1E-06 57.9 8.0 23 466-488 139-161 (411)
394 PRK06793 fliI flagellum-specif 93.2 0.26 5.7E-06 57.7 8.3 97 466-565 158-258 (432)
395 KOG0652 26S proteasome regulat 93.1 1.3 2.9E-05 47.4 12.6 121 467-621 208-356 (424)
396 PF10236 DAP3: Mitochondrial r 93.1 2.6 5.6E-05 47.6 16.0 45 601-645 258-306 (309)
397 cd03289 ABCC_CFTR2 The CFTR su 93.1 0.43 9.3E-06 52.9 9.6 34 465-500 31-64 (275)
398 CHL00033 ycf3 photosystem I as 93.1 0.69 1.5E-05 47.0 10.5 50 931-988 71-120 (168)
399 cd02023 UMPK Uridine monophosp 93.1 0.1 2.2E-06 54.6 4.5 23 466-488 1-23 (198)
400 PRK14269 phosphate ABC transpo 93.1 0.6 1.3E-05 50.7 10.6 24 465-488 29-52 (246)
401 TIGR03498 FliI_clade3 flagella 93.1 0.23 4.9E-06 58.1 7.6 98 465-565 141-242 (418)
402 cd02021 GntK Gluconate kinase 93.1 0.069 1.5E-06 53.2 3.0 23 466-488 1-23 (150)
403 cd01983 Fer4_NifH The Fer4_Nif 93.1 0.13 2.9E-06 46.1 4.6 33 466-498 1-33 (99)
404 cd00464 SK Shikimate kinase (S 93.0 0.08 1.7E-06 52.7 3.4 22 467-488 2-23 (154)
405 cd03369 ABCC_NFT1 Domain 2 of 93.0 0.77 1.7E-05 48.4 11.0 34 465-499 35-68 (207)
406 PF13086 AAA_11: AAA domain; P 93.0 0.15 3.2E-06 54.1 5.6 47 466-512 19-73 (236)
407 cd03283 ABC_MutS-like MutS-lik 93.0 0.28 6.1E-06 51.6 7.6 24 465-488 26-49 (199)
408 cd03300 ABC_PotA_N PotA is an 92.9 0.48 1E-05 51.0 9.5 24 465-488 27-50 (232)
409 PF03266 NTPase_1: NTPase; In 92.9 0.089 1.9E-06 53.8 3.5 25 467-491 2-26 (168)
410 KOG0727 26S proteasome regulat 92.9 0.14 3.1E-06 54.3 4.9 126 465-620 190-339 (408)
411 PRK13948 shikimate kinase; Pro 92.8 0.092 2E-06 54.4 3.6 26 465-490 11-36 (182)
412 cd01129 PulE-GspE PulE/GspE Th 92.8 0.29 6.2E-06 54.0 7.6 101 464-591 80-180 (264)
413 COG0572 Udk Uridine kinase [Nu 92.8 0.12 2.7E-06 54.5 4.4 28 465-492 9-36 (218)
414 TIGR02322 phosphon_PhnN phosph 92.8 0.092 2E-06 54.0 3.5 24 466-489 3-26 (179)
415 PRK13949 shikimate kinase; Pro 92.8 0.089 1.9E-06 53.9 3.3 23 467-489 4-26 (169)
416 COG0488 Uup ATPase components 92.7 0.64 1.4E-05 56.1 10.9 133 466-606 350-511 (530)
417 cd02024 NRK1 Nicotinamide ribo 92.7 0.082 1.8E-06 55.0 2.9 23 466-488 1-23 (187)
418 TIGR03497 FliI_clade2 flagella 92.7 0.32 6.9E-06 56.9 8.1 98 465-565 138-239 (413)
419 PRK13946 shikimate kinase; Pro 92.6 0.1 2.2E-06 54.1 3.6 25 465-489 11-35 (184)
420 PRK07196 fliI flagellum-specif 92.6 0.34 7.3E-06 56.8 8.2 24 465-488 156-179 (434)
421 PF02374 ArsA_ATPase: Anion-tr 92.6 0.2 4.2E-06 56.5 6.1 39 465-503 2-40 (305)
422 PF03205 MobB: Molybdopterin g 92.6 0.19 4.1E-06 49.8 5.3 37 466-502 2-39 (140)
423 PRK09544 znuC high-affinity zi 92.6 0.41 8.8E-06 52.3 8.4 24 465-488 31-54 (251)
424 PRK15453 phosphoribulokinase; 92.6 0.17 3.6E-06 55.8 5.2 39 464-502 5-43 (290)
425 TIGR03771 anch_rpt_ABC anchore 92.6 0.72 1.6E-05 49.3 10.2 23 465-487 7-29 (223)
426 PRK06936 type III secretion sy 92.6 0.36 7.9E-06 56.5 8.3 97 465-565 163-264 (439)
427 COG1428 Deoxynucleoside kinase 92.6 0.22 4.7E-06 52.2 5.8 25 465-489 5-29 (216)
428 CHL00060 atpB ATP synthase CF1 92.6 0.59 1.3E-05 55.4 10.1 49 463-512 161-212 (494)
429 KOG0739 AAA+-type ATPase [Post 92.6 0.84 1.8E-05 49.9 10.3 146 466-641 168-334 (439)
430 PRK09281 F0F1 ATP synthase sub 92.5 0.54 1.2E-05 56.2 9.8 99 463-565 162-266 (502)
431 COG3640 CooC CO dehydrogenase 92.5 0.22 4.9E-06 52.8 5.8 50 466-521 2-52 (255)
432 cd00071 GMPK Guanosine monopho 92.5 0.093 2E-06 51.8 2.9 25 467-491 2-26 (137)
433 PRK13650 cbiO cobalt transport 92.5 0.52 1.1E-05 52.3 9.2 34 465-499 34-67 (279)
434 TIGR02524 dot_icm_DotB Dot/Icm 92.5 0.1 2.3E-06 59.9 3.7 106 465-591 135-243 (358)
435 PRK07594 type III secretion sy 92.4 0.27 5.8E-06 57.6 7.1 23 466-488 157-179 (433)
436 TIGR00958 3a01208 Conjugate Tr 92.4 0.56 1.2E-05 59.3 10.5 24 465-488 508-531 (711)
437 TIGR02546 III_secr_ATP type II 92.4 0.44 9.4E-06 56.0 8.8 25 465-489 146-170 (422)
438 PRK13768 GTPase; Provisional 92.4 0.17 3.6E-06 55.5 5.1 36 466-501 4-39 (253)
439 PRK06002 fliI flagellum-specif 92.4 0.35 7.6E-06 56.8 7.9 93 466-565 167-266 (450)
440 TIGR01041 ATP_syn_B_arch ATP s 92.4 0.59 1.3E-05 55.3 9.8 100 463-565 141-250 (458)
441 KOG2228 Origin recognition com 92.4 0.71 1.5E-05 51.5 9.6 151 430-596 22-184 (408)
442 PF13181 TPR_8: Tetratricopept 92.3 0.28 6E-06 35.4 4.6 32 932-963 1-32 (34)
443 cd01134 V_A-ATPase_A V/A-type 92.3 0.76 1.7E-05 52.1 10.1 45 466-512 159-205 (369)
444 TIGR01069 mutS2 MutS2 family p 92.3 0.17 3.6E-06 63.9 5.5 187 465-668 323-522 (771)
445 COG2274 SunT ABC-type bacterio 92.3 0.46 1E-05 59.3 9.3 55 544-599 619-674 (709)
446 TIGR01287 nifH nitrogenase iro 92.3 0.19 4.1E-06 55.6 5.4 38 466-503 2-39 (275)
447 cd03114 ArgK-like The function 92.3 0.18 4E-06 50.4 4.8 35 467-501 2-36 (148)
448 PRK09099 type III secretion sy 92.3 0.37 7.9E-06 56.7 7.9 98 465-565 164-265 (441)
449 COG0703 AroK Shikimate kinase 92.2 0.12 2.6E-06 52.7 3.3 27 466-492 4-30 (172)
450 PF13432 TPR_16: Tetratricopep 92.2 0.65 1.4E-05 38.9 7.4 36 931-971 30-65 (65)
451 COG3598 RepA RecA-family ATPas 92.2 0.49 1.1E-05 52.4 8.1 56 466-521 91-158 (402)
452 PTZ00185 ATPase alpha subunit; 92.2 0.82 1.8E-05 54.2 10.4 99 463-565 189-301 (574)
453 TIGR01313 therm_gnt_kin carboh 92.2 0.095 2.1E-06 53.0 2.6 30 467-501 1-30 (163)
454 KOG0730 AAA+-type ATPase [Post 92.2 1.5 3.3E-05 52.9 12.7 173 466-668 220-415 (693)
455 PRK07721 fliI flagellum-specif 92.1 0.43 9.4E-06 56.2 8.4 93 465-565 159-260 (438)
456 TIGR02203 MsbA_lipidA lipid A 92.1 0.53 1.2E-05 57.8 9.6 23 465-487 359-381 (571)
457 cd02034 CooC The accessory pro 92.1 0.23 5.1E-06 47.5 5.1 37 467-503 2-38 (116)
458 PRK12339 2-phosphoglycerate ki 92.1 0.14 2.9E-06 53.9 3.7 24 465-488 4-27 (197)
459 smart00487 DEXDc DEAD-like hel 92.1 0.47 1E-05 48.3 7.8 52 465-516 25-78 (201)
460 PRK04182 cytidylate kinase; Pr 92.1 0.12 2.7E-06 52.8 3.4 24 466-489 2-25 (180)
461 cd03236 ABC_RNaseL_inhibitor_d 92.1 0.63 1.4E-05 51.0 9.1 24 465-488 27-50 (255)
462 PF00625 Guanylate_kin: Guanyl 92.0 0.16 3.4E-06 52.6 4.1 35 465-499 3-37 (183)
463 PRK10463 hydrogenase nickel in 92.0 0.88 1.9E-05 50.5 10.1 38 463-501 103-140 (290)
464 TIGR01040 V-ATPase_V1_B V-type 92.0 0.64 1.4E-05 54.6 9.4 26 463-489 141-166 (466)
465 TIGR01026 fliI_yscN ATPase Fli 92.0 0.39 8.5E-06 56.6 7.8 23 466-488 165-187 (440)
466 PF03969 AFG1_ATPase: AFG1-lik 92.0 0.28 6.1E-06 56.4 6.4 105 467-596 65-169 (362)
467 KOG0736 Peroxisome assembly fa 92.0 0.94 2E-05 55.4 10.8 44 600-643 556-599 (953)
468 TIGR03411 urea_trans_UrtD urea 92.0 0.89 1.9E-05 49.2 10.1 24 465-488 29-52 (242)
469 PRK14530 adenylate kinase; Pro 92.0 0.14 3E-06 54.5 3.7 23 466-488 5-27 (215)
470 PF03796 DnaB_C: DnaB-like hel 91.9 0.87 1.9E-05 49.9 10.1 39 465-503 20-59 (259)
471 PRK13765 ATP-dependent proteas 91.9 0.22 4.8E-06 61.3 5.8 78 429-519 28-106 (637)
472 TIGR01817 nifA Nif-specific re 91.9 0.52 1.1E-05 57.4 9.1 62 432-502 196-257 (534)
473 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.28 6E-06 37.1 4.1 37 933-969 2-38 (38)
474 KOG0066 eIF2-interacting prote 91.8 1.1 2.3E-05 51.3 10.4 23 466-488 615-637 (807)
475 KOG0061 Transporter, ABC super 91.7 0.79 1.7E-05 56.6 10.3 38 463-500 55-94 (613)
476 PRK05688 fliI flagellum-specif 91.6 0.71 1.5E-05 54.4 9.2 96 466-565 170-270 (451)
477 PRK13975 thymidylate kinase; P 91.6 0.16 3.4E-06 53.0 3.6 25 466-490 4-28 (196)
478 TIGR00455 apsK adenylylsulfate 91.6 0.24 5.1E-06 51.3 4.9 35 465-499 19-53 (184)
479 PRK13537 nodulation ABC transp 91.6 0.97 2.1E-05 50.9 10.1 24 465-488 34-57 (306)
480 COG1131 CcmA ABC-type multidru 91.6 0.74 1.6E-05 51.6 9.1 26 465-490 32-57 (293)
481 PRK15359 type III secretion sy 91.5 0.85 1.8E-05 45.3 8.6 81 869-989 27-107 (144)
482 PRK03731 aroL shikimate kinase 91.5 0.16 3.5E-06 51.8 3.5 24 466-489 4-27 (171)
483 PRK13657 cyclic beta-1,2-gluca 91.5 0.5 1.1E-05 58.3 8.4 24 465-488 362-385 (588)
484 cd01672 TMPK Thymidine monopho 91.5 0.44 9.6E-06 49.3 6.8 33 466-498 2-34 (200)
485 COG1936 Predicted nucleotide k 91.4 0.15 3.3E-06 51.7 3.0 20 466-485 2-21 (180)
486 PRK15429 formate hydrogenlyase 91.4 0.49 1.1E-05 59.5 8.3 61 433-502 377-437 (686)
487 cd02029 PRK_like Phosphoribulo 91.4 0.24 5.2E-06 54.1 4.7 37 466-502 1-37 (277)
488 PRK13531 regulatory ATPase Rav 91.4 0.16 3.5E-06 59.9 3.7 47 431-490 19-65 (498)
489 TIGR02314 ABC_MetN D-methionin 91.4 0.81 1.8E-05 52.4 9.3 23 465-487 32-54 (343)
490 COG4088 Predicted nucleotide k 91.3 0.16 3.6E-06 52.6 3.2 33 466-498 3-35 (261)
491 TIGR02173 cyt_kin_arch cytidyl 91.3 0.17 3.6E-06 51.3 3.4 23 466-488 2-24 (171)
492 cd02040 NifH NifH gene encodes 91.3 0.31 6.7E-06 53.6 5.7 38 466-503 3-40 (270)
493 TIGR01193 bacteriocin_ABC ABC- 91.3 1 2.2E-05 56.9 11.0 23 465-487 501-523 (708)
494 TIGR02768 TraA_Ti Ti-type conj 91.3 0.79 1.7E-05 57.9 9.9 35 464-498 368-402 (744)
495 COG2884 FtsE Predicted ATPase 91.3 1.3 2.9E-05 45.7 9.5 25 465-489 29-53 (223)
496 TIGR01448 recD_rel helicase, p 91.2 1 2.2E-05 56.8 10.7 116 464-596 338-455 (720)
497 TIGR03263 guanyl_kin guanylate 91.2 0.15 3.3E-06 52.3 3.0 23 466-488 3-25 (180)
498 PRK04196 V-type ATP synthase s 91.2 0.94 2E-05 53.7 9.8 100 463-565 143-252 (460)
499 PRK05057 aroK shikimate kinase 91.2 0.16 3.5E-06 52.1 3.1 24 466-489 6-29 (172)
500 TIGR00176 mobB molybdopterin-g 91.2 0.27 5.9E-06 49.6 4.7 33 466-498 1-33 (155)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.3e-77 Score=770.15 Aligned_cols=477 Identities=17% Similarity=0.230 Sum_probs=368.3
Q ss_pred ccccccCCCccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCc
Q 001918 150 SVSLSCNRLRSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFR 229 (996)
Q Consensus 150 s~~~s~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~ 229 (996)
++|||+++.|+|||||||||+|| |++|++|||+||.++||+||+||+ +++|+.+.+.+.+||++|+|||||||+|||+
T Consensus 2 ~~~~~~~~~~~~~vf~sfrg~d~-r~~f~~hl~~~l~~~~i~~f~d~~-~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 2 ASSSSSSRNWVYDVFPSFSGEDV-RITFLSHFLKELDRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCCCCCCCcEEeeCCCccc-ccCHHHHHHHHHHHCCCeEEccCC-ccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 34455667899999999999995 899999999999999999999875 6777778888889999999999999999999
Q ss_pred CcccHHHHHhhhcCC-----ceEeeeecCCCCchhhHHHHhhhhhhHHhhccchhhhhhhhhHHHHHHHhhhhccccccc
Q 001918 230 NPYSIEELRYFSGKK-----NLVPIFFDLSPGDCLVRDIVEKRGELWEKNGGELWVLYGGLEKEWKEAVNGLSRVDEWKL 304 (996)
Q Consensus 230 S~wCL~EL~~i~~~~-----~v~PvFy~vdPs~~~vr~~~~~~g~~~~~~~~~~~~~~~~~~~~W~eal~~~~~~~~w~~ 304 (996)
|+||||||++||+|+ .||||||+||||| ||+|.+.||++|+++.... ..+..++|++|++.++++.||++
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~--v~~~~g~f~~~f~~~~~~~---~~~~~~~w~~al~~~~~~~g~~~ 154 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSH--VRKQTGDFGEAFEKTCQNK---TEDEKIQWKQALTDVANILGYHS 154 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHH--HhhccchHHHHHHHHhccc---chhHHHHHHHHHHHHhCcCceec
Confidence 999999999999864 4999999999999 9999999999999886421 23456999999999999999988
Q ss_pred cccccchHHHHHHHHHHHhHHhcCchHHHHHHHhhhhcCCCcccccccccccCchhhHHhHHHHHcCCCCchhHhhhhhH
Q 001918 305 EAQEGNCRDCILRAVTLLAMKLGRRSVVERLTKWREKVDKEEFPFPRNENFIGRKKELSELEFILFGDITGDSERDYFEL 384 (996)
Q Consensus 305 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~p~~~~~~~vG~~~~l~~l~~~l~~~~~~~~~~~~l~~ 384 (996)
. ..++..+.|++||+.+..+++.. |....++|||++.++++|+.++..+.
T Consensus 155 ~-~~~~E~~~i~~Iv~~v~~~l~~~------------------~~~~~~~~vG~~~~l~~l~~lL~l~~----------- 204 (1153)
T PLN03210 155 Q-NWPNEAKMIEEIANDVLGKLNLT------------------PSNDFEDFVGIEDHIAKMSSLLHLES----------- 204 (1153)
T ss_pred C-CCCCHHHHHHHHHHHHHHhhccc------------------cCcccccccchHHHHHHHHHHHcccc-----------
Confidence 3 44566789999999998888532 44556789999999999998774322
Q ss_pred hhhccccCcccCCCCCchhHHHhhhhcccCCCCCCCCccccccCccchhccccchHhhhhhhhcCCCCccccccccccCc
Q 001918 385 KARTRRKNLRIGWSKSASLEERRKERQWEGGSRKGKEPVVWKESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGK 464 (996)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~p~v~~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~ 464 (996)
...
T Consensus 205 -----------------------------------------------------------------------------~~~ 207 (1153)
T PLN03210 205 -----------------------------------------------------------------------------EEV 207 (1153)
T ss_pred -----------------------------------------------------------------------------Cce
Confidence 023
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cH--H--------HHHHHHHHHcc-CccCcccCCccccc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YI--R--------QNYLNLWSFLD-VDVGIENCSDKSRI 531 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~--~--------~~l~~La~~L~-~~~~~~~~~~~~~~ 531 (996)
++|+|||||||||||||+++|+++..+|++.+|++.... .. . .....++..+. ....... +
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~------~ 281 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD------I 281 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC------c
Confidence 589999999999999999999999999999999864210 00 0 00111222110 0000000 0
Q ss_pred chhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCcCC---c-ceEEccCC
Q 001918 532 KSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRVMN---L-EPLKLSYL 607 (996)
Q Consensus 532 ~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~~~---~-~~~~v~~L 607 (996)
. ......++++| .++|+|||||||++..+| +.+.....++++|++||||||++.+.. . .+|+|+.|
T Consensus 282 -----~-~~~~~~~~~~L-~~krvLLVLDdv~~~~~l---~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l 351 (1153)
T PLN03210 282 -----K-IYHLGAMEERL-KHRKVLIFIDDLDDQDVL---DALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLP 351 (1153)
T ss_pred -----c-cCCHHHHHHHH-hCCeEEEEEeCCCCHHHH---HHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCC
Confidence 0 00124578888 899999999999987666 566666667788999999999998742 3 78999999
Q ss_pred CHHHHHHHHhhhcCC---CCcccHHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccccCCCCCccc
Q 001918 608 SGVEAMSLMQGSVKD---YPITEVDALRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTINRMPLRDLSWNGRESHSL 684 (996)
Q Consensus 608 ~~~EA~~Lf~~~a~~---~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~ 684 (996)
+.+||++||+++||. .+.+..+++++|+++|+|+||||+++|++|+++. .++|.+.+.+...
T Consensus 352 ~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l~~L~~------------- 416 (1153)
T PLN03210 352 SNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDMLPRLRN------------- 416 (1153)
T ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHh-------------
Confidence 999999999999983 2234678899999999999999999999999654 4555555444210
Q ss_pred ccchhHHHHHHHHHHhccccCCCCHHHHHHHHhccccCCCCCCHHHHHHHhccCCCcccchhhHHHhhhhcccCCCCCcc
Q 001918 685 RRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWFAPAAIPVSLLALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYT 764 (996)
Q Consensus 685 ~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff~~~~Ip~~ll~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~ 764 (996)
..+..|..+|++||+.|+.. .....|++++|||.+..++......+ .|++
T Consensus 417 ~~~~~I~~~L~~SYd~L~~~----~~k~~Fl~ia~ff~~~~~~~v~~~l~---------------------~~~~----- 466 (1153)
T PLN03210 417 GLDGKIEKTLRVSYDGLNNK----KDKAIFRHIACLFNGEKVNDIKLLLA---------------------NSDL----- 466 (1153)
T ss_pred CccHHHHHHHHHhhhccCcc----chhhhhheehhhcCCCCHHHHHHHHH---------------------hcCC-----
Confidence 11346889999999999642 12257999999998876654221111 1222
Q ss_pred hHHHHHHHHHHHhcCCceeeCCCCeEEEcHHHHHHHHHhCC
Q 001918 765 KRSEAEASSMLLRFNIARSSTRQGYIHFNDLVKLYARKRGV 805 (996)
Q Consensus 765 ~~~~~~~l~~L~~~sLI~~~~~~~~i~mH~Lvq~~~r~~l~ 805 (996)
+...+++.|+++|||++.. +++.||+|+|+|+|+...
T Consensus 467 --~~~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~ 503 (1153)
T PLN03210 467 --DVNIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVR 503 (1153)
T ss_pred --CchhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHH
Confidence 1356799999999998864 789999999999998763
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=8.1e-44 Score=354.97 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=137.6
Q ss_pred ccCCCccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCccc
Q 001918 154 SCNRLRSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYS 233 (996)
Q Consensus 154 s~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wC 233 (996)
|++...+|||||||||+|| |++|++|||++|+++||+||+|+.++++|+.+.+.+.+||++|+|+|||||+|||+|+||
T Consensus 20 ~~~~~~~yDVFISFrG~Dt-R~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDT-KRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred CCCCCCCCcEEEeCCCccc-cccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 3344567999999999995 899999999999999999999998888898888888899999999999999999999999
Q ss_pred HHHHHhhhcCC-ceEeeeecCCCCchhhHHHHhhhhhhHHhhccchhhhhhhhhHHHHHHHhhhhccccccccccccchH
Q 001918 234 IEELRYFSGKK-NLVPIFFDLSPGDCLVRDIVEKRGELWEKNGGELWVLYGGLEKEWKEAVNGLSRVDEWKLEAQEGNCR 312 (996)
Q Consensus 234 L~EL~~i~~~~-~v~PvFy~vdPs~~~vr~~~~~~g~~~~~~~~~~~~~~~~~~~~W~eal~~~~~~~~w~~~~~~~~~~ 312 (996)
|+||++|++|+ .||||||+||||| ||+|.+ +. ...+..++|++||+.++++.||++....+++.
T Consensus 99 LdEL~~I~e~~~~ViPIFY~VdPsd--Vr~q~~----------~~---~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~ 163 (187)
T PLN03194 99 LHELALIMESKKRVIPIFCDVKPSQ--LRVVDN----------GT---CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWS 163 (187)
T ss_pred HHHHHHHHHcCCEEEEEEecCCHHH--hhcccc----------CC---CCHHHHHHHHHHHHHHhccccccCCCCCCCHH
Confidence 99999999976 4999999999999 777631 11 12346799999999999999998854457899
Q ss_pred HHHHHHHHHHhHHh
Q 001918 313 DCILRAVTLLAMKL 326 (996)
Q Consensus 313 ~~i~~~~~~~~~~l 326 (996)
+.|++||+.+.++|
T Consensus 164 e~i~~iv~~v~k~l 177 (187)
T PLN03194 164 EVVTMASDAVIKNL 177 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998887
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2.5e-29 Score=278.99 Aligned_cols=260 Identities=19% Similarity=0.221 Sum_probs=183.1
Q ss_pred cchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHH--HhcCCCEEEEEeCcCc-cHHHHHHHHH
Q 001918 437 TEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYR--YHQRYKMVLWVGGESR-YIRQNYLNLW 513 (996)
Q Consensus 437 R~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~--~~~~F~~v~wi~~~~~-~~~~~l~~La 513 (996)
|+.+++++.+ .+.... .+.++|+|+||||+||||||.+++++ +.++|++++|+++... +..+.+..|.
T Consensus 1 re~~~~~l~~------~L~~~~---~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 1 REKEIEKLKD------WLLDNS---NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp -HHHHHHHHH------HHHTTT---TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred CHHHHHHHHH------HhhCCC---CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccc
Confidence 5666777663 221111 25679999999999999999999998 8899999999998877 6677788888
Q ss_pred HHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 514 SFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 514 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
..|+........ ..+..+....++++| .++++|||||||++...| +.+...++.+..|++||||||+
T Consensus 72 ~~l~~~~~~~~~---------~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~---~~l~~~~~~~~~~~kilvTTR~ 138 (287)
T PF00931_consen 72 RQLGEPDSSISD---------PKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDL---EELREPLPSFSSGSKILVTTRD 138 (287)
T ss_dssp HHHTCC-STSSC---------CSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH----------HCHHSS-EEEEEESC
T ss_pred cccccccccccc---------ccccccccccchhhh-ccccceeeeeeecccccc---cccccccccccccccccccccc
Confidence 888776432100 125567889999999 888999999999988655 5566666766668999999999
Q ss_pred CCcCC-----cceEEccCCCHHHHHHHHhhhcCCCC----cccHHHHHHHHHHhCCChHHHHHHHHHHhcCC--CCHHHH
Q 001918 594 PRVMN-----LEPLKLSYLSGVEAMSLMQGSVKDYP----ITEVDALRVIEEKVGRLTMGLAVVGAILSELP--INPSRL 662 (996)
Q Consensus 594 ~~~~~-----~~~~~v~~L~~~EA~~Lf~~~a~~~~----~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~--~s~~e~ 662 (996)
..+.. ...|+|++|+.+||++||+..++... ....+.+++|++.|+|+||||+++|++|+.+. ..|.++
T Consensus 139 ~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~ 218 (287)
T PF00931_consen 139 RSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEA 218 (287)
T ss_dssp GGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88743 26899999999999999999998322 34466789999999999999999999995533 357777
Q ss_pred HHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHHHHHHHHhccccCCCCCCHHHHHH
Q 001918 663 LDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWFAPAAIPVSLLAL 733 (996)
Q Consensus 663 l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff~~~~Ip~~ll~~ 733 (996)
++.+.....+. ......+..++++||+.|++..+ ..|+.++.|.....||...+..
T Consensus 219 ~~~l~~~~~~~----------~~~~~~~~~~l~~s~~~L~~~~~-----~~f~~L~~f~~~~~i~~~~li~ 274 (287)
T PF00931_consen 219 LEELENSLRES----------RDYDRSVFSALELSYDSLPDELR-----RCFLYLSIFPEGVPIPRERLIR 274 (287)
T ss_dssp HHHHHHCHTCS----------SGSCHHHHHHHHHHHHSSHTCCH-----HHHHHGGGSGTTS-EEHHHHHH
T ss_pred ccccccccccc----------ccccccccccceechhcCCccHH-----HHHhhCcCCCCCceECHHHHHH
Confidence 77766632110 01356788999999999976321 3444444444566888877765
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-27 Score=293.72 Aligned_cols=314 Identities=18% Similarity=0.232 Sum_probs=231.3
Q ss_pred cccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHH---HhcCCCEEEEEeCcCc-cHHHHHH
Q 001918 435 QSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYR---YHQRYKMVLWVGGESR-YIRQNYL 510 (996)
Q Consensus 435 vGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~---~~~~F~~v~wi~~~~~-~~~~~l~ 510 (996)
||.+..++.+.. .+... +.++|+|+||||+||||||++++++ ..++|+.++|+..... +......
T Consensus 161 VG~e~~~~kl~~------~L~~d-----~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 161 VGLETMLEKLWN------RLMED-----DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred ccHHHHHHHHHH------HhccC-----CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 999999998873 22211 2368999999999999999999995 5688999999988776 7777777
Q ss_pred HHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEE
Q 001918 511 NLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIS 590 (996)
Q Consensus 511 ~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIIT 590 (996)
.+.+.++........ ....+....+.+.| ..+|+||||||||+..+| +.+..-+|...+|++|++|
T Consensus 230 ~Il~~l~~~~~~~~~----------~~~~~~~~~i~~~L-~~krfllvLDDIW~~~dw---~~I~~~~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 230 TILERLGLLDEEWED----------KEEDELASKLLNLL-EGKRFLLVLDDIWEEVDW---DKIGVPFPSRENGSKVVLT 295 (889)
T ss_pred HHHHHhccCCcccch----------hhHHHHHHHHHHHh-ccCceEEEEecccccccH---HhcCCCCCCccCCeEEEEE
Confidence 888887764332110 12357788899999 899999999999999888 7888878876668999999
Q ss_pred ecCCCcCC----c-ceEEccCCCHHHHHHHHhhhcCCCC----cccHHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHH
Q 001918 591 TRLPRVMN----L-EPLKLSYLSGVEAMSLMQGSVKDYP----ITEVDALRVIEEKVGRLTMGLAVVGAILSELPINPSR 661 (996)
Q Consensus 591 TR~~~~~~----~-~~~~v~~L~~~EA~~Lf~~~a~~~~----~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e 661 (996)
||+..++. . ..++|+.|+++||+.||++.++... +...+++++++++|+|+||||.++|..|+.+. ++.+
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~-t~~e 374 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKK-TVQE 374 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCC-cHHH
Confidence 99999843 2 6899999999999999999998432 22578899999999999999999999999765 4557
Q ss_pred HHHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHHHHHHHHhccccCCC-CCCHHHHHHHhccCCC
Q 001918 662 LLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWFAPA-AIPVSLLALAAHKIPE 740 (996)
Q Consensus 662 ~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff~~~-~Ip~~ll~~~~~~l~~ 740 (996)
|.+.+....... ..+. ......+..++++|||.|.. ..+..+..|+.|+.+ .|+..-+...
T Consensus 375 W~~~~~~l~s~~-----~~~~-~~~~~~i~~iLklSyd~L~~------~lK~CFLycalFPED~~I~~e~Li~y------ 436 (889)
T KOG4658|consen 375 WRRALNVLKSSL-----AADF-SGMEESILPILKLSYDNLPE------ELKSCFLYCALFPEDYEIKKEKLIEY------ 436 (889)
T ss_pred HHHHHccccccc-----cCCC-CchhhhhHHhhhccHhhhhH------HHHHHHHhhccCCcccccchHHHHHH------
Confidence 766665532110 0111 12245688999999999963 345566666766444 4665544432
Q ss_pred cccchhhHHHhhhhcccCCCCC-----cchHHHHHHHHHHHhcCCceeeC---CCCeEEEcHHHHHHHHHhCC
Q 001918 741 KHKGTHLWRKLLLSLTCGFTSS-----YTKRSEAEASSMLLRFNIARSST---RQGYIHFNDLVKLYARKRGV 805 (996)
Q Consensus 741 ~~~~~~~W~~~l~~~~~~~~~~-----~~~~~~~~~l~~L~~~sLI~~~~---~~~~i~mH~Lvq~~~r~~l~ 805 (996)
|.. -|+... .......+.+..|++++|+.... .-.++.|||+|++|+.....
T Consensus 437 -------Wia------EGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 437 -------WIA------EGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred -------HHh------ccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 210 011100 01234568899999999997643 23679999999999987775
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.79 E-value=4.3e-16 Score=199.94 Aligned_cols=303 Identities=12% Similarity=0.086 Sum_probs=186.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQ 507 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~ 507 (996)
....++-|+..++.+.+ ....+++.|.|++|.||||++.+++.+. +.+.|+..... ....
T Consensus 12 ~~~~~~~R~rl~~~l~~--------------~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG--------------ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESDNQPER 73 (903)
T ss_pred CccccCcchHHHHHHhc--------------ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcccCCHHH
Confidence 34466777777777752 1134689999999999999999988642 25889988754 4444
Q ss_pred HHHHHHHHccCccCcccCCcccccchh-hhcHHHHHHHHHHHHhc-CCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 508 NYLNLWSFLDVDVGIENCSDKSRIKSF-EEQEEAAICRVRKELMR-NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
.+..|...++................. ..+....+..+...|.. ..+++|||||++...+-.-.+.|..+++..+++.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 444555544322111100000000000 01223344445555533 7899999999987642211135555666555678
Q ss_pred EEEEEecCCCcC---C----cceEEcc----CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHHHhc
Q 001918 586 HIIISTRLPRVM---N----LEPLKLS----YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAILSE 654 (996)
Q Consensus 586 rIIITTR~~~~~---~----~~~~~v~----~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~ 654 (996)
++|||||..... . ...++|. +|+.+|+.+||....+.. -..+.+.+|.+.++|+|++|.+++..+..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999999985321 1 1345666 999999999998876532 23445779999999999999999988765
Q ss_pred CCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHH-HHHHHhccccCCCCHHHHHHHHhccccCCCCCCHHHHHH
Q 001918 655 LPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLF-EVCFSIFDHADGPRSLATRMVLAGGWFAPAAIPVSLLAL 733 (996)
Q Consensus 655 ~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l-~iS~~~L~~~~~~~~~A~~lL~ilaff~~~~Ip~~ll~~ 733 (996)
.+.+.......+... ....+...+ +-.++.| ++..+.||..+++++ .+...++..
T Consensus 232 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~v~~~l------~~~~~~~l~~~a~~~--~~~~~l~~~ 287 (903)
T PRK04841 232 NNSSLHDSARRLAGI----------------NASHLSDYLVEEVLDNV------DLETRHFLLRCSVLR--SMNDALIVR 287 (903)
T ss_pred CCCchhhhhHhhcCC----------------CchhHHHHHHHHHHhcC------CHHHHHHHHHhcccc--cCCHHHHHH
Confidence 433333332222110 011232222 2224445 567899999999985 455665554
Q ss_pred HhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCcee--eCCCCeEEEcHHHHHHHHHhC
Q 001918 734 AAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARS--STRQGYIHFNDLVKLYARKRG 804 (996)
Q Consensus 734 ~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~--~~~~~~i~mH~Lvq~~~r~~l 804 (996)
... ..+....|..|.+.+|+.. +.++..|.+|+|++++++..+
T Consensus 288 l~~----------------------------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 288 VTG----------------------------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HcC----------------------------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 211 1124678999999999643 223347999999999999887
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.74 E-value=9.3e-19 Score=173.62 Aligned_cols=105 Identities=27% Similarity=0.370 Sum_probs=88.1
Q ss_pred eEeeccC-CCccccchHHHHHHHHHHc--CCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccHHHHHh
Q 001918 163 VFIGLHG-CKPSLMRFANWLRAELEVQ--GMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSIEELRY 239 (996)
Q Consensus 163 VFlsfrG-~d~~r~~F~~hL~~~L~~~--gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL~EL~~ 239 (996)
|||||+| .| +..|++||..+|+++ |+++|++++....|..+.+.+.++|+.|++.|||||+||++|.||+.||..
T Consensus 1 vfisy~~~~d--~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~ 78 (141)
T PF01582_consen 1 VFISYSGKDD--REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQE 78 (141)
T ss_dssp EEEEE-GHHG--HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHH
T ss_pred cEEEeCCCCc--HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhh
Confidence 8999999 55 699999999999999 999999998777776667777789999999999999999999999999999
Q ss_pred hhc-----C--CceEeeeecCCCCchhhH-HHHhhhhhhH
Q 001918 240 FSG-----K--KNLVPIFFDLSPGDCLVR-DIVEKRGELW 271 (996)
Q Consensus 240 i~~-----~--~~v~PvFy~vdPs~~~vr-~~~~~~g~~~ 271 (996)
+++ . +.||||||+|.|++ |+ ++..+++..+
T Consensus 79 a~~~~~~~~~~~~Il~v~~~v~~~~--~~~~~~~~~~~~~ 116 (141)
T PF01582_consen 79 ALERLLEEGRDKLILPVFYDVSPSD--VRPDQSLRFLLRF 116 (141)
T ss_dssp HHHHHHCSTCTTEEEEESSSS-CHH--CHTHHHHHHHHHC
T ss_pred hhhhccccccccceeeEeccCChhh--cChhhhHHHHHHh
Confidence 874 2 46899999999999 77 5665554443
No 7
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.65 E-value=2.4e-16 Score=155.80 Aligned_cols=109 Identities=24% Similarity=0.387 Sum_probs=90.5
Q ss_pred cceeEeeccC-CCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccHHHHH
Q 001918 160 SCDVFIGLHG-CKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSIEELR 238 (996)
Q Consensus 160 ~~dVFlsfrG-~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL~EL~ 238 (996)
.|||||||.+ ++ .++.|+.+|..+|...|+.+|.||....++. .. .+.++|++|++.|+|+|+||..|.||..|+.
T Consensus 1 ~~dvFISys~~~~-~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~-~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~ 77 (140)
T smart00255 1 EYDVFISYSGKED-VRNEFLSHLLEKLRGYGLCVFIDDFEPGGGD-LE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELV 77 (140)
T ss_pred CCeEEEECCCCHH-HHHHHHHHHHHHhhcCCcEEEecCcccccch-HH-HHHHHHHHCcEEEEEECcccccChhHHHHHH
Confidence 4999999999 56 4689999999999999999999987654444 34 6678999999999999999999999999999
Q ss_pred hhhc------CCceEeeeecCCCCchhhHHHHhhhhhhHHh
Q 001918 239 YFSG------KKNLVPIFFDLSPGDCLVRDIVEKRGELWEK 273 (996)
Q Consensus 239 ~i~~------~~~v~PvFy~vdPs~~~vr~~~~~~g~~~~~ 273 (996)
.+++ .+.||||||+..|++ |.++.++.+.++..
T Consensus 78 ~a~~~~~~~~~~~iIPI~~~~~~~~--~~~~~~~l~~~~~~ 116 (140)
T smart00255 78 AALENALEEGGLRVIPIFYEVIPSD--VRKQPGKFRKVLKK 116 (140)
T ss_pred HHHHHHHHcCCCeEEEEEEecChHH--HHhcccHHHHHHHH
Confidence 8864 357999999999988 66555555544443
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.57 E-value=1.6e-11 Score=146.39 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=197.0
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cH
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YI 505 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~ 505 (996)
|.+..+.+-|...++.+.+ ..+-+++.|..+.|.|||||+.+++. ...+-..+.|++.+.. ..
T Consensus 15 P~~~~~~v~R~rL~~~L~~--------------~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp 79 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR--------------ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDP 79 (894)
T ss_pred CCCcccccccHHHHHHHhc--------------CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCH
Confidence 3344567778888887773 01335799999999999999999988 4555668999998876 45
Q ss_pred HHHHHHHHHHccCccCcccCCccccc--chhhhcHHHHHHHHHHHH-hcCCCEEEEEcCCCCcccccchHHHhhhccCCC
Q 001918 506 RQNYLNLWSFLDVDVGIENCSDKSRI--KSFEEQEEAAICRVRKEL-MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG 582 (996)
Q Consensus 506 ~~~l~~La~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~ 582 (996)
...+..|...++...+.... +...+ +....+....+..+..-| +..++.+|||||..-..+-.-...+.-++...+
T Consensus 80 ~rF~~yLi~al~~~~p~~~~-~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 80 ARFLSYLIAALQQATPTLGD-EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred HHHHHHHHHHHHHhCccccH-HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 55555565555532221110 00000 011124445566666666 247889999999887643211234555555555
Q ss_pred CCeEEEEEecCCCcC---C--c--ceEEcc----CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHH
Q 001918 583 GETHIIISTRLPRVM---N--L--EPLKLS----YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 583 ~gsrIIITTR~~~~~---~--~--~~~~v~----~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
++-.+|||||.+.-. + . ..++|+ .|+.+|+.++|...... + -+...++.|.+..+|.+-||.+++=.
T Consensus 159 ~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~-Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 159 ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-P-LDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-C-CChHHHHHHHhhcccHHHHHHHHHHH
Confidence 789999999997542 2 1 455665 68999999999988642 1 23344789999999999999999988
Q ss_pred HhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHH-HHHHHHHhccccCCCCHHHHHHHHhccccCCCCCCHHH
Q 001918 652 LSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQ-LFEVCFSIFDHADGPRSLATRMVLAGGWFAPAAIPVSL 730 (996)
Q Consensus 652 L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~-~l~iS~~~L~~~~~~~~~A~~lL~ilaff~~~~Ip~~l 730 (996)
++ .+.+.+..+..|... ...|.. ..+--++.| +|..+.||..++++..- ..++
T Consensus 237 ~~-~~~~~~q~~~~LsG~-----------------~~~l~dYL~eeVld~L------p~~l~~FLl~~svl~~f--~~eL 290 (894)
T COG2909 237 LR-NNTSAEQSLRGLSGA-----------------ASHLSDYLVEEVLDRL------PPELRDFLLQTSVLSRF--NDEL 290 (894)
T ss_pred cc-CCCcHHHHhhhccch-----------------HHHHHHHHHHHHHhcC------CHHHHHHHHHHHhHHHh--hHHH
Confidence 87 333444444433221 111111 111123344 56788999999988443 2334
Q ss_pred HHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCce--eeCCCCeEEEcHHHHHHHHHhCCh
Q 001918 731 LALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIAR--SSTRQGYIHFNDLVKLYARKRGVT 806 (996)
Q Consensus 731 l~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~--~~~~~~~i~mH~Lvq~~~r~~l~~ 806 (996)
...... ..+-...|+.|.+++|.- .+..++.|+.|.|+.+|.+.+...
T Consensus 291 ~~~Ltg----------------------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 291 CNALTG----------------------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHhc----------------------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 333111 112356799999999864 455678899999999999999854
No 9
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.21 E-value=5e-12 Score=118.02 Aligned_cols=86 Identities=26% Similarity=0.381 Sum_probs=72.6
Q ss_pred eEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccHHHHHhhhc
Q 001918 163 VFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSIEELRYFSG 242 (996)
Q Consensus 163 VFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL~EL~~i~~ 242 (996)
|||||..+| +.|+.+|...|+.+|+.+|.|. ....|+.+...+.++|++|++.|+++|++|..|.||..|+....+
T Consensus 1 VFIS~~~~D---~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~ 76 (102)
T PF13676_consen 1 VFISYSSED---REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK 76 (102)
T ss_dssp EEEEEEGGG---CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred eEEEecCCc---HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence 899999999 5799999999999999999997 666677677778899999999999999999999999999998876
Q ss_pred C-CceEeeeec
Q 001918 243 K-KNLVPIFFD 252 (996)
Q Consensus 243 ~-~~v~PvFy~ 252 (996)
. +.||||..+
T Consensus 77 ~~~~iipv~~~ 87 (102)
T PF13676_consen 77 RGKPIIPVRLD 87 (102)
T ss_dssp TSESEEEEECS
T ss_pred CCCEEEEEEEC
Confidence 4 359999943
No 10
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.1e-09 Score=110.54 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC------CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY------KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~ 538 (996)
+++.|.|.+|+||||+++.++.++.... ..++|+.............+...+....... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------------~ 66 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES--------------I 66 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc--------------h
Confidence 3799999999999999999999876543 4667776554311111122333322111110 0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCcccccch-------HHHhhhccC-CCCCeEEEEEecCCCcC-------CcceEE
Q 001918 539 EAAICRVRKELMRNIPFLVIIDNLESEKDWWDD-------KLVMDLLPR-FGGETHIIISTRLPRVM-------NLEPLK 603 (996)
Q Consensus 539 ~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~-------~~L~~~lp~-~~~gsrIIITTR~~~~~-------~~~~~~ 603 (996)
......+...+...+++|||||++|+...-... +.|..+++. ..++++||||||..... ....++
T Consensus 67 ~~~~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~ 146 (166)
T PF05729_consen 67 APIEELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILE 146 (166)
T ss_pred hhhHHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEE
Confidence 011112333445789999999999987542110 235555554 34589999999997761 125799
Q ss_pred ccCCCHHHHHHHHhhhc
Q 001918 604 LSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a 620 (996)
|++|+.++..+++.++.
T Consensus 147 l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYF 163 (166)
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.03 E-value=5.4e-08 Score=113.35 Aligned_cols=202 Identities=10% Similarity=0.094 Sum_probs=124.4
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCc-cHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESR-YIRQN 508 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~-~~~~~ 508 (996)
..|+||+.|++++.. .+...-. ......+.|+|++|+|||++++.+++.+.... -.++++++... +....
T Consensus 30 ~~l~~Re~e~~~l~~------~l~~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 30 ENLPHREEQIEELAF------ALRPALR-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCCCHHHHHHHHHH------HHHHHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 469999999999874 1111100 01123578999999999999999999876654 35678887665 66667
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhcc---CCC-C
Q 001918 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLP---RFG-G 583 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp---~~~-~ 583 (996)
+..+...+........ ..+..+....+.+.+. .+++.+||||+++....-.+.+.+..++. ... .
T Consensus 103 ~~~i~~~l~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~ 172 (394)
T PRK00411 103 FSEIARQLFGHPPPSS----------GLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGA 172 (394)
T ss_pred HHHHHHHhcCCCCCCC----------CCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCC
Confidence 7777777753111000 0134566677777773 35568899999998631001134544432 121 1
Q ss_pred CeEEEEEecCCCcC-----------CcceEEccCCCHHHHHHHHhhhcCC---CCcccHHHHHHHHHHh----CCChHHH
Q 001918 584 ETHIIISTRLPRVM-----------NLEPLKLSYLSGVEAMSLMQGSVKD---YPITEVDALRVIEEKV----GRLTMGL 645 (996)
Q Consensus 584 gsrIIITTR~~~~~-----------~~~~~~v~~L~~~EA~~Lf~~~a~~---~~~~~~~~a~~iv~~l----gglPLAL 645 (996)
+..||.++.+..+. ....+.+++++.++..+++..++.. ...-..+.++.+++.+ |.++.|+
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~ 252 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAI 252 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHH
Confidence 33467776665431 1146789999999999999987631 1112334445555544 5577887
Q ss_pred HHHHH
Q 001918 646 AVVGA 650 (996)
Q Consensus 646 ~~~gs 650 (996)
.++-.
T Consensus 253 ~ll~~ 257 (394)
T PRK00411 253 DLLRR 257 (394)
T ss_pred HHHHH
Confidence 77643
No 12
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=7.7e-10 Score=123.50 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
+.|.++|.|||||||++...++ ++..| ++++++++... .....+..++..+++.... .+..+
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---------------g~~~~ 78 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---------------GDSAV 78 (414)
T ss_pred heeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---------------chHHH
Confidence 4699999999999999999999 88888 57888877765 5556666667777766432 12334
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCcCCc-ceEEccCCCHH-HHHHHHhhhc
Q 001918 543 CRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRVMNL-EPLKLSYLSGV-EAMSLMQGSV 620 (996)
Q Consensus 543 ~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~~~~-~~~~v~~L~~~-EA~~Lf~~~a 620 (996)
..+..++ .+++.|+|+||.+++.+- -..-+..++..+ +.-.|+.|+|....... .++.++.|+.. ++.++|...+
T Consensus 79 ~~~~~~~-~~rr~llvldncehl~~~-~a~~i~all~~~-~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 79 DTLVRRI-GDRRALLVLDNCEHLLDA-CAALIVALLGAC-PRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HHHHHHH-hhhhHHHHhcCcHHHHHH-HHHHHHHHHccc-hhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHH
Confidence 4555666 789999999999875321 001223333333 36789999999877555 78888888876 7999998877
Q ss_pred C------CCCcccHHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHH
Q 001918 621 K------DYPITEVDALRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLF 694 (996)
Q Consensus 621 ~------~~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l 694 (996)
. .....+.....+|++.+.|.||+|+.+++..+ .++..+..+.|++.- +.+....+. ....+......|
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~--sl~~~~i~~~L~drf-~ll~~~~r~--a~~~~qtl~asl 230 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVR--SLSPDEIAAGLRDRF-RLLTGGARL--AVLRQQTLRASL 230 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHH--hcCHHHHHHHHhhHH-HHHhccccc--chhHHHhccchh
Confidence 4 22344566688999999999999999999988 567777777776621 112111111 111233455788
Q ss_pred HHHHHhccc
Q 001918 695 EVCFSIFDH 703 (996)
Q Consensus 695 ~iS~~~L~~ 703 (996)
+.||..|..
T Consensus 231 ~ws~~lLtg 239 (414)
T COG3903 231 DWSYALLTG 239 (414)
T ss_pred hhhhHhhhh
Confidence 999999954
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.96 E-value=2.3e-09 Score=114.55 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=102.5
Q ss_pred ccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHH-
Q 001918 434 MQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNL- 512 (996)
Q Consensus 434 fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~L- 512 (996)
|+||+.|++++.+ .+..+ ....+.|+|+.|+|||+|++++.+........++|+..........+..+
T Consensus 1 F~gR~~el~~l~~------~l~~~-----~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 1 FFGREKELEKLKE------LLESG-----PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-S-HHHHHHHHH------CHHH-------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH------HHHhh-----cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 7999999999984 11111 13479999999999999999999988554334555554333222111111
Q ss_pred ---------HHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcc-cccc-h---HHHhhh
Q 001918 513 ---------WSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEK-DWWD-D---KLVMDL 577 (996)
Q Consensus 513 ---------a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~-~~~~-~---~~L~~~ 577 (996)
...+.............. ............+.+.+. .+++++||+|+++... ...+ . ..+..+
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISK--DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEEC--TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhh--cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHH
Confidence 112221111100000000 001123344555555553 3456999999999876 2111 1 233333
Q ss_pred ccC--CCCCeEEEEEecCCCc------------CCcceEEccCCCHHHHHHHHhhhcCCCC--cccHHHHHHHHHHhCCC
Q 001918 578 LPR--FGGETHIIISTRLPRV------------MNLEPLKLSYLSGVEAMSLMQGSVKDYP--ITEVDALRVIEEKVGRL 641 (996)
Q Consensus 578 lp~--~~~gsrIIITTR~~~~------------~~~~~~~v~~L~~~EA~~Lf~~~a~~~~--~~~~~~a~~iv~~lggl 641 (996)
+.. ......+|++.-...+ .....+.|++|+.+|+.+++........ +...+..++|...+||+
T Consensus 148 ~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred HhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 332 1223444444433211 1125599999999999999999754321 12455579999999999
Q ss_pred hHHHHH
Q 001918 642 TMGLAV 647 (996)
Q Consensus 642 PLAL~~ 647 (996)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 14
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=4.4e-08 Score=107.85 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=109.9
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++++|+|++|+|||||++.+++.+...--.++|+.....+..+.+..++..++...... +......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~-------------~~~~~~~ 109 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGR-------------DKAALLR 109 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCC-------------CHHHHHH
Confidence 347999999999999999999988663211334443322255566777777777653211 1122223
Q ss_pred HHH----HHHhcCCCEEEEEcCCCCcccccchHHHhhhccC---CCCCeEEEEEecCC--------CcC----C-cceEE
Q 001918 544 RVR----KELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPR---FGGETHIIISTRLP--------RVM----N-LEPLK 603 (996)
Q Consensus 544 ~l~----~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~---~~~gsrIIITTR~~--------~~~----~-~~~~~ 603 (996)
.+. ..+..+++.+||+|+++..... ..+.+..+... ......|++|.... ... . ...++
T Consensus 110 ~l~~~l~~~~~~~~~~vliiDe~~~l~~~-~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~ 188 (269)
T TIGR03015 110 ELEDFLIEQFAAGKRALLVVDEAQNLTPE-LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred HHHHHHHHHHhCCCCeEEEEECcccCCHH-HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeee
Confidence 333 3333678899999999986421 11233333221 12233556665432 110 1 14678
Q ss_pred ccCCCHHHHHHHHhhhcCC-----CCcccHHHHHHHHHHhCCChHHHHHHHHHH
Q 001918 604 LSYLSGVEAMSLMQGSVKD-----YPITEVDALRVIEEKVGRLTMGLAVVGAIL 652 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~~-----~~~~~~~~a~~iv~~lgglPLAL~~~gs~L 652 (996)
+++|+.+|..+++...+.. ...-..+..+.|++.++|.|..|..++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999999877641 112245778999999999999999988876
No 15
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.93 E-value=3.1e-07 Score=105.79 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=118.1
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCC------EEEEEeCcCc-cH
Q 001918 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYK------MVLWVGGESR-YI 505 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~------~v~wi~~~~~-~~ 505 (996)
.|+||+.|++++.. .+..... ....+.+.|+|++|+|||++++.+++.+....+ .++|+++... +.
T Consensus 16 ~l~gRe~e~~~l~~------~l~~~~~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 16 RIVHRDEQIEELAK------ALRPILR-GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCcHHHHHHHHH------HHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 68999999999874 1110000 011235899999999999999999997654322 4678888765 66
Q ss_pred HHHHHHHHHHc---cCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccC-
Q 001918 506 RQNYLNLWSFL---DVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPR- 580 (996)
Q Consensus 506 ~~~l~~La~~L---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~- 580 (996)
...+..+...+ +....... .+..+....+.+.+. .+++++||||++|....- ..+.+..++.+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-~~~~L~~l~~~~ 156 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTG-----------LSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-DDDLLYQLSRAR 156 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCC-----------CCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-CcHHHHhHhccc
Confidence 67777787777 22211100 123345566666663 466789999999987210 11234443322
Q ss_pred ----C-CCCeEEEEEecCCCcC---------Cc--ceEEccCCCHHHHHHHHhhhcC---CC---CcccHHHHHHHHHHh
Q 001918 581 ----F-GGETHIIISTRLPRVM---------NL--EPLKLSYLSGVEAMSLMQGSVK---DY---PITEVDALRVIEEKV 638 (996)
Q Consensus 581 ----~-~~gsrIIITTR~~~~~---------~~--~~~~v~~L~~~EA~~Lf~~~a~---~~---~~~~~~~a~~iv~~l 638 (996)
. +....+|.+|.+..+. .. ..+.+++++.+|-.+++..++. .. .++..+.+..++...
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1 1234556666554331 11 4688999999999999998864 11 111123344566666
Q ss_pred CCCh-HHHHH
Q 001918 639 GRLT-MGLAV 647 (996)
Q Consensus 639 gglP-LAL~~ 647 (996)
.|-| .|+.+
T Consensus 237 ~Gd~R~al~~ 246 (365)
T TIGR02928 237 HGDARKAIDL 246 (365)
T ss_pred cCCHHHHHHH
Confidence 6776 44443
No 16
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.84 E-value=8.8e-08 Score=108.75 Aligned_cols=196 Identities=12% Similarity=0.028 Sum_probs=110.1
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHH
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~ 507 (996)
|..-.+|+|++.++.++..-. ..........+.+.|+|++|+|||+||+.+++.+...+. ++.+.......
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l------~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~~~~~~~~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFI------EAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSGPALEKPG 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHH------HHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEecccccChH
Confidence 345568999999998886300 000000011235889999999999999999998765432 22221111111
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001918 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
.+..+...+.... ..- ...+..+ .....+.+...+ .+.+..+|+|+..+. .++.-.+| +.+-|
T Consensus 92 ~l~~~l~~l~~~~-vl~---IDEi~~l---~~~~~e~l~~~~-e~~~~~~~l~~~~~~------~~~~~~l~---~~~li 154 (328)
T PRK00080 92 DLAAILTNLEEGD-VLF---IDEIHRL---SPVVEEILYPAM-EDFRLDIMIGKGPAA------RSIRLDLP---PFTLI 154 (328)
T ss_pred HHHHHHHhcccCC-EEE---EecHhhc---chHHHHHHHHHH-HhcceeeeeccCccc------cceeecCC---CceEE
Confidence 2222222221100 000 0000000 011223344555 566677777776544 23333334 24566
Q ss_pred EEEecCCCcCC-----c-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHHH
Q 001918 588 IISTRLPRVMN-----L-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVVG 649 (996)
Q Consensus 588 IITTR~~~~~~-----~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~g 649 (996)
..||+...+.. . ..+++++++.+|..+++...+.... .-..+.+..|++.++|.|-.+..+.
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l 223 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLL 223 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHH
Confidence 67777655522 2 4689999999999999998876332 2355678999999999995443333
No 17
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=6.5e-08 Score=108.66 Aligned_cols=193 Identities=16% Similarity=0.051 Sum_probs=108.6
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLN 511 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~ 511 (996)
.+|+|++.+.+++..- +............+.|+|++|+|||+||+.+++++...+. .+..........+..
T Consensus 4 ~~~iG~~~~~~~l~~~------l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLF------IEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITSGPALEKPGDLAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHH------HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---EeccchhcCchhHHH
Confidence 3799999999988730 0000000001234789999999999999999998765432 222111111111212
Q ss_pred HHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEe
Q 001918 512 LWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIST 591 (996)
Q Consensus 512 La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITT 591 (996)
....++... ..- ...+... ..+..+.+...+ .+.+..+|+|+..+. .++...+| +.+-|..||
T Consensus 75 ~l~~~~~~~-vl~---iDEi~~l---~~~~~e~l~~~~-~~~~~~~v~~~~~~~------~~~~~~~~---~~~li~~t~ 137 (305)
T TIGR00635 75 ILTNLEEGD-VLF---IDEIHRL---SPAVEELLYPAM-EDFRLDIVIGKGPSA------RSVRLDLP---PFTLVGATT 137 (305)
T ss_pred HHHhcccCC-EEE---EehHhhh---CHHHHHHhhHHH-hhhheeeeeccCccc------cceeecCC---CeEEEEecC
Confidence 112221110 000 0000000 012234455566 556677788876554 23333333 356677777
Q ss_pred cCCCcCC-----c-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHHHH
Q 001918 592 RLPRVMN-----L-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVVGA 650 (996)
Q Consensus 592 R~~~~~~-----~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~gs 650 (996)
+...+.. . ..+++++++.+|..+++...+.... .-..+.+..|++.++|.|-.+..+..
T Consensus 138 ~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 138 RAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 7765522 2 5689999999999999998876322 23466788999999999965544443
No 18
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=3e-06 Score=107.06 Aligned_cols=327 Identities=16% Similarity=0.098 Sum_probs=176.2
Q ss_pred ccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEE---EEEeCcCc----cHH
Q 001918 434 MQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMV---LWVGGESR----YIR 506 (996)
Q Consensus 434 fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v---~wi~~~~~----~~~ 506 (996)
++||+.|++++.. .+++...| ...|+.+.|.+|||||+|+.++...+.+++... +|-..... .+.
T Consensus 2 l~GRe~ev~~Ll~---~f~~v~~g-----~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lv 73 (849)
T COG3899 2 LYGRETELAQLLA---AFDRVSKG-----RGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLV 73 (849)
T ss_pred CCchHhHHHHHHH---HHHHHhCC-----CeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHH
Confidence 6899999999873 11111111 234899999999999999999999887663211 12112221 233
Q ss_pred HHHHHHHHHcc-------------------CccCcc--cCCcccccch-------h-hhcHH-----HHHHHHHHHHhcC
Q 001918 507 QNYLNLWSFLD-------------------VDVGIE--NCSDKSRIKS-------F-EEQEE-----AAICRVRKELMRN 552 (996)
Q Consensus 507 ~~l~~La~~L~-------------------~~~~~~--~~~~~~~~~~-------~-~~~~~-----~~~~~l~~~L~~~ 552 (996)
+.+.++..++. ...... ..++...+.. . ..... .....+.....+.
T Consensus 74 q~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~ 153 (849)
T COG3899 74 QAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEE 153 (849)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhcc
Confidence 34444433331 100000 0000000000 0 00001 1122222333456
Q ss_pred CCEEEEEcCCCCcccccchHHHhhhccCCC------CCeEEEEEecCCCc------CCcceEEccCCCHHHHHHHHhhhc
Q 001918 553 IPFLVIIDNLESEKDWWDDKLVMDLLPRFG------GETHIIISTRLPRV------MNLEPLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 553 ~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~------~gsrIIITTR~~~~------~~~~~~~v~~L~~~EA~~Lf~~~a 620 (996)
++.++|+||+.-.+.- .-+.|..++.... +....+.|.+...- .....+.|.||+..+..+|.....
T Consensus 154 ~plVi~leDlhWaD~~-SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 154 HPLVIVLEDLHWADSA-SLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred CCeEEEEecccccChh-HHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 7999999999743210 1122222222111 12233333333211 123789999999999999999988
Q ss_pred CCCCcccHHHHHHHHHHhCCChHHHHHHHHHHhcCCC---CHHH--HHHHHhcCCCcccccCCCCCcccccchhHHHHHH
Q 001918 621 KDYPITEVDALRVIEEKVGRLTMGLAVVGAILSELPI---NPSR--LLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFE 695 (996)
Q Consensus 621 ~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~---s~~e--~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~ 695 (996)
+.....-.+.+..|+++..|+|+-+..+-..|.+.++ ..+. |-..+... .......++.+
T Consensus 233 ~~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i---------------~~~~~~~~vv~ 297 (849)
T COG3899 233 GCTKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL---------------GILATTDAVVE 297 (849)
T ss_pred CCcccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc---------------CCchhhHHHHH
Confidence 7533334556889999999999999999999887542 1111 10000000 00111222233
Q ss_pred HHHHhccccCCCCHHHHHHHHhccccCCCCCCHHHHHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHH
Q 001918 696 VCFSIFDHADGPRSLATRMVLAGGWFAPAAIPVSLLALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSML 775 (996)
Q Consensus 696 iS~~~L~~~~~~~~~A~~lL~ilaff~~~~Ip~~ll~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L 775 (996)
+--.+|++ ..+.++.+|.+++++++. ++...|....... ....+...++.|
T Consensus 298 ~l~~rl~k---L~~~t~~Vl~~AA~iG~~-F~l~~La~l~~~~-------------------------~~~~a~~l~~al 348 (849)
T COG3899 298 FLAARLQK---LPGTTREVLKAAACIGNR-FDLDTLAALAEDS-------------------------PALEAAALLDAL 348 (849)
T ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCcc-CCHHHHHHHHhhc-------------------------hHHHHHHHHHHh
Confidence 33334432 356789999999999754 8887776643221 123455666667
Q ss_pred HhcCCceee------CCCCeE---EEcHHHHHHHHHhCChHHHHHHH
Q 001918 776 LRFNIARSS------TRQGYI---HFNDLVKLYARKRGVTGVAHAMV 813 (996)
Q Consensus 776 ~~~sLI~~~------~~~~~i---~mH~Lvq~~~r~~l~~~~~~~~~ 813 (996)
.+..++-.+ ...... ..|++||+++...+.....+..+
T Consensus 349 ~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~~rq~~H 395 (849)
T COG3899 349 QEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPESQRQYLH 395 (849)
T ss_pred HhhceeccccccccccccchhhHHhhHHHHHHHHhccCchhhHHHHH
Confidence 666555321 111122 46999999999998776654433
No 19
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.69 E-value=2e-08 Score=77.18 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHH
Q 001918 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPD 972 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpd 972 (996)
+|.++++||.+|..+|++++|+++++++++++++++|++|||
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 478899999999999999999999999999999999999997
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.55 E-value=1.2e-07 Score=83.60 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=57.2
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
|+.++.+++++|.+|..+|+|++|.++|++++.+ .+.+|++||+++.+++|||.+++..|+.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 62 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDY 62 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 5778999999999999999999999999999999 8888999999999999999999998875
No 21
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=3.7e-06 Score=93.93 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=94.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
..+||+||+||||||+.++......|. -+++... +.. +..+.++.-+
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~---~~sAv~~----gvk--------------------------dlr~i~e~a~ 97 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFE---ALSAVTS----GVK--------------------------DLREIIEEAR 97 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceE---Eeccccc----cHH--------------------------HHHHHHHHHH
Confidence 579999999999999999998776664 2222111 111 2233344444
Q ss_pred HHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEE--EecCCCc-------CCcceEEccCCCHHHHHHHHh
Q 001918 547 KELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIII--STRLPRV-------MNLEPLKLSYLSGVEAMSLMQ 617 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIII--TTR~~~~-------~~~~~~~v~~L~~~EA~~Lf~ 617 (996)
+.+..+++.+|++|.|.... ..|=..+||.-..|.-|+| ||-|+.. ....++++++|+.+|-.+++.
T Consensus 98 ~~~~~gr~tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRFN----KAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HHHhcCCceEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHH
Confidence 44436889999999999863 3455667787666787777 7777765 234899999999999999999
Q ss_pred hhcC----CCC----cccHHHHHHHHHHhCCC
Q 001918 618 GSVK----DYP----ITEVDALRVIEEKVGRL 641 (996)
Q Consensus 618 ~~a~----~~~----~~~~~~a~~iv~~lggl 641 (996)
+.+- ..+ .-+.+....|++.++|=
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 8442 111 12455677788887774
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=8.3e-07 Score=86.29 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-----CCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-----YKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-----F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~ 538 (996)
+++.|+|.+|+|||+++..++..+... -..++|+.+... +.......++..++...... .+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~------------~~~ 72 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSR------------QTS 72 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSST------------S-H
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccccc------------CCH
Confidence 479999999999999999999987653 346779987766 67777778888887765431 145
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCc-ccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 539 EAAICRVRKELMRNIPFLVIIDNLESE-KDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 539 ~~~~~~l~~~L~~~~r~LLVLDdvd~~-~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
.+....+.+.+...+..+||||+++.. ..- .-+.|..+.. ..+..||+..++
T Consensus 73 ~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~-~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 DELRSLLIDALDRRRVVLLVIDEADHLFSDE-FLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEETTHHHHTHH-HHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCeEEEEeChHhcCCHH-HHHHHHHHHh--CCCCeEEEEECh
Confidence 667788888885555679999999986 310 0122333333 357888888765
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1e-05 Score=97.99 Aligned_cols=201 Identities=14% Similarity=0.077 Sum_probs=108.9
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHH
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQN 508 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~ 508 (996)
..-.+++|.+..++.|.. .+..+ . -...+.++|..|+||||+|+.+++.+...-. .-...+... ..
T Consensus 13 qtFdEVIGQe~Vv~~L~~------aL~~g-R---L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~PCG~C---~s 78 (830)
T PRK07003 13 KDFASLVGQEHVVRALTH------ALDGG-R---LHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQPCGVC---RA 78 (830)
T ss_pred CcHHHHcCcHHHHHHHHH------HHhcC-C---CCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCCCccc---HH
Confidence 345678898888888773 11110 0 1235789999999999999999997643210 001111111 11
Q ss_pred HHHHHHH-ccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001918 509 YLNLWSF-LDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 509 l~~La~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
...+..- .......+.. ....+ ++..+.++.+.......+.-++|||+++.+..- ....|.+.|.....+.++
T Consensus 79 Cr~I~~G~h~DviEIDAa-s~rgV----DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAA-SNRGV----DEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred HHHHhcCCCceEEEeccc-ccccH----HHHHHHHHHHHhccccCCceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEE
Confidence 1111110 0000000000 00000 011112221111111234558889999987431 113455555443457888
Q ss_pred EEEecCCCc-C-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCC-hHHHHHHH
Q 001918 588 IISTRLPRV-M-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRL-TMGLAVVG 649 (996)
Q Consensus 588 IITTR~~~~-~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lggl-PLAL~~~g 649 (996)
|+||.+..- . .+..++++.++.++..+.|.+.+.... .-+.+.+..|++.++|- --||.++-
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888887543 1 247899999999999999998875322 23566788899999884 45665543
No 24
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=1.3e-05 Score=91.10 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=101.9
Q ss_pred ccCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccH
Q 001918 426 KESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYI 505 (996)
Q Consensus 426 ~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~ 505 (996)
..|.....|+||+.|++++.. ...+... ...++++|.|++|+|||||++.+..+.. ...++++.. ..
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~-------VL~~~d~-~~privvLtG~~G~GKTTLlR~~~~~l~---~~qL~vNpr--g~ 322 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQ-------VLRRLDT-AHPRIVVFTGFRGCGKSSLCRSAVRKEG---MPAVFVDVR--GT 322 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHH-------HHhccCC-CCceEEEEECCCCCCHHHHHHHHHhcCC---ceEEEECCC--CH
Confidence 356667799999999999984 1111111 1235899999999999999999987654 224555433 56
Q ss_pred HHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-----hcCCCEEEEE--cCCCCcccccchHHHhhhc
Q 001918 506 RQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-----MRNIPFLVII--DNLESEKDWWDDKLVMDLL 578 (996)
Q Consensus 506 ~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~~~r~LLVL--Ddvd~~~~~~~~~~L~~~l 578 (996)
.+.+..++..||++... ...+....|.+.| .++++.+||+ -.-+++.-.+ .....+.
T Consensus 323 eElLr~LL~ALGV~p~~--------------~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvy--ne~v~la 386 (550)
T PTZ00202 323 EDTLRSVVKALGVPNVE--------------ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVY--NEVVALA 386 (550)
T ss_pred HHHHHHHHHHcCCCCcc--------------cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHH--HHHHHHH
Confidence 78888899999974321 1234455555554 1366666665 3333221100 1111111
Q ss_pred cCCCCCeEEEEEecCCCc-------CCcceEEccCCCHHHHHHHHhhhc
Q 001918 579 PRFGGETHIIISTRLPRV-------MNLEPLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 579 p~~~~gsrIIITTR~~~~-------~~~~~~~v~~L~~~EA~~Lf~~~a 620 (996)
... .-|+|+|----+.+ .....|-|+.++.++|.++-....
T Consensus 387 ~dr-r~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 387 CDR-RLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccc-hhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 25788875443333 344889999999999999887765
No 25
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=2.2e-06 Score=83.55 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+++.|.|+.|+|||||+++++.+.. .-..+++++.......... .. +....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~---------------------------~~-~~~~~ 53 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA---------------------------DP-DLLEY 53 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh---------------------------hh-hhHHH
Confidence 4799999999999999999998766 4456778865543110000 00 01233
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCcC---------C-cceEEccCCCHHH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRVM---------N-LEPLKLSYLSGVE 611 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~~---------~-~~~~~v~~L~~~E 611 (996)
+.+.. ..++.+||||++....+|+ ..+..+.... +..+||+|+...... + ...+++.+|+-.|
T Consensus 54 ~~~~~-~~~~~~i~iDEiq~~~~~~--~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 54 FLELI-KPGKKYIFIDEIQYLPDWE--DALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHhh-ccCCcEEEEehhhhhccHH--HHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 33333 4578999999999988772 3444454433 468999999875441 1 2578999998876
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.29 E-value=1.7e-05 Score=84.82 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..|.|+|++|+|||+||+.++++.......++++++..- .... ..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~-----~~~~------------------------------~~ 83 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL-----AQAD------------------------------PE 83 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH-----HHhH------------------------------HH
Confidence 468999999999999999999987655556677753211 0000 01
Q ss_pred HHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCCC--c--C------C---cceEEccCCCH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLPR--V--M------N---LEPLKLSYLSG 609 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~~--~--~------~---~~~~~v~~L~~ 609 (996)
+...+ .. .-+|||||++...... ....|..++.. ...+..||+||+... + . . ...+++++++.
T Consensus 84 ~~~~~-~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~ 161 (226)
T TIGR03420 84 VLEGL-EQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD 161 (226)
T ss_pred HHhhc-cc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH
Confidence 11122 22 2389999999764210 02345554432 112458899888532 1 1 1 14789999999
Q ss_pred HHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHHHH
Q 001918 610 VEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVVGA 650 (996)
Q Consensus 610 ~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~gs 650 (996)
+|-..++...+.... .-..+..+.|.+.+.|.|..|..+-.
T Consensus 162 ~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 162 EEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999987654211 23456678888899999987766543
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.29 E-value=9e-06 Score=95.31 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=95.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|+|++|+||||||+.+++.....|. .+++..... . +....+..+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~~~~~----~--------------------------~ir~ii~~~ 84 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFE---ALSAVTSGV----K--------------------------DLREVIEEA 84 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE---EEecccccH----H--------------------------HHHHHHHHH
Confidence 4788999999999999999987765542 222111110 0 111222222
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEE--EecCCCc-------CCcceEEccCCCHHHHHHHH
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIII--STRLPRV-------MNLEPLKLSYLSGVEAMSLM 616 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIII--TTR~~~~-------~~~~~~~v~~L~~~EA~~Lf 616 (996)
......+++.+|+||+++.... .+...+++....+..++| ||.+... ....++++++|+.++..++|
T Consensus 85 ~~~~~~g~~~vL~IDEi~~l~~----~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL 160 (413)
T PRK13342 85 RQRRSAGRRTILFIDEIHRFNK----AQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160 (413)
T ss_pred HHhhhcCCceEEEEechhhhCH----HHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHH
Confidence 2222245788999999997632 233333332223455555 3444321 12378999999999999999
Q ss_pred hhhcCC----CCcccHHHHHHHHHHhCCChHHHHHHHHHHh--cCCCCHHHHHHHHh
Q 001918 617 QGSVKD----YPITEVDALRVIEEKVGRLTMGLAVVGAILS--ELPINPSRLLDTIN 667 (996)
Q Consensus 617 ~~~a~~----~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~--~~~~s~~e~l~~L~ 667 (996)
...+.. ...-..+....|+++++|-+..+.-+-..+. ...++.+...+.+.
T Consensus 161 ~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~ 217 (413)
T PRK13342 161 KRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQ 217 (413)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHh
Confidence 987542 1123456678899999998865533322221 22345555444443
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=98.27 E-value=1.4e-05 Score=86.08 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.+.|||++|+|||+|+..+++.+..+...+.|++.... . .....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-----------------~------------------~~~~~ 84 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-----------------Q------------------YFSPA 84 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-----------------h------------------hhhHH
Confidence 458999999999999999999988766666778853100 0 00011
Q ss_pred HHHHHhcCCCEEEEEcCCCCcc---cccchHHHhhhccCC-CCCeEEEEEecCCC----------cCC----cceEEccC
Q 001918 545 VRKELMRNIPFLVIIDNLESEK---DWWDDKLVMDLLPRF-GGETHIIISTRLPR----------VMN----LEPLKLSY 606 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~---~~~~~~~L~~~lp~~-~~gsrIIITTR~~~----------~~~----~~~~~v~~ 606 (996)
+.+.+ .+.-+|||||++... +| . ..+..++... ..|+.+||+|.+.. +.. ..++++++
T Consensus 85 ~~~~~--~~~dlLilDDi~~~~~~~~~-~-~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~ 160 (229)
T PRK06893 85 VLENL--EQQDLVCLDDLQAVIGNEEW-E-LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND 160 (229)
T ss_pred HHhhc--ccCCEEEEeChhhhcCChHH-H-HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC
Confidence 22223 233589999998742 11 1 2344444321 12556655554431 111 14899999
Q ss_pred CCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHH
Q 001918 607 LSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 607 L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~ 646 (996)
++.++..++|.+.+.... .-..+...-|++.+.|-.-.|.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHH
Confidence 999999999998886222 2345567777777776654443
No 29
>PF14516 AAA_35: AAA-like domain
Probab=98.26 E-value=0.00032 Score=79.83 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc------cHHHHHH----HHHHHccCccCcccCCcccccchh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR------YIRQNYL----NLWSFLDVDVGIENCSDKSRIKSF 534 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~------~~~~~l~----~La~~L~~~~~~~~~~~~~~~~~~ 534 (996)
..+.|.|+-.+|||+|...+.++....--.+++++.... +....+. .+.+.|++.......+ ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w-----~~~ 106 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYW-----DEE 106 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHH-----HHh
Confidence 369999999999999999999887654334557765532 2333333 3445555432111000 000
Q ss_pred hhcHHHHHHHHHHHH-h-cCCCEEEEEcCCCCcccccc-hH----HHhhhccCC----CCCeEEEEEecCCC--c-----
Q 001918 535 EEQEEAAICRVRKEL-M-RNIPFLVIIDNLESEKDWWD-DK----LVMDLLPRF----GGETHIIISTRLPR--V----- 596 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L-~-~~~r~LLVLDdvd~~~~~~~-~~----~L~~~lp~~----~~gsrIIITTR~~~--~----- 596 (996)
..........+.+.| . .+++.+|+||++|.+-.... .+ .|+.+.... ....-.+|...... .
T Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~ 186 (331)
T PF14516_consen 107 IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDIN 186 (331)
T ss_pred cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCC
Confidence 012223344455544 2 47899999999997633100 01 222221110 00122222222211 1
Q ss_pred ---CCc-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHh
Q 001918 597 ---MNL-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTIN 667 (996)
Q Consensus 597 ---~~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~ 667 (996)
.+. ..++|++++.+|...|+..+-.... ....++|...+||+|--+..++..|....++++++++.-.
T Consensus 187 ~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~~~~~~l~~~a~ 258 (331)
T PF14516_consen 187 QSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---QEQLEQLMDWTGGHPYLVQKACYLLVEEQITLEQLLEEAI 258 (331)
T ss_pred CCCcccccceeCCCCCHHHHHHHHHhhhccCC---HHHHHHHHHHHCCCHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 122 6799999999999999988754322 2338899999999999999999999888888888776543
No 30
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=94.54 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=105.0
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-C---EEEEEeCcCcc
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-K---MVLWVGGESRY 504 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~---~v~wi~~~~~~ 504 (996)
..-.+++|-+...+.|.. .+..+ . -...+.++|..|+||||+|+.+++.+...- + +...-.+...
T Consensus 13 qtFddVIGQe~vv~~L~~------al~~g-R---LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C- 81 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTH------ALEQQ-R---LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC- 81 (700)
T ss_pred CcHHHHcCcHHHHHHHHH------HHHhC-C---CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc-
Confidence 345578888887777763 01000 0 123578999999999999999999764311 0 0000001110
Q ss_pred HHHHHHHHHH-----HccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHh
Q 001918 505 IRQNYLNLWS-----FLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVM 575 (996)
Q Consensus 505 ~~~~l~~La~-----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~ 575 (996)
.....+.. .+.+.... . ...++. ..+.+.+ ..++.-++|||+++.+..- ..+.|.
T Consensus 82 --~sC~~I~aG~hpDviEIdAas-----~-------~gVDdI-ReLie~~~~~P~~gr~KViIIDEah~Ls~~-AaNALL 145 (700)
T PRK12323 82 --RACTEIDAGRFVDYIEMDAAS-----N-------RGVDEM-AQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-AFNAML 145 (700)
T ss_pred --HHHHHHHcCCCCcceEecccc-----c-------CCHHHH-HHHHHHHHhchhcCCceEEEEEChHhcCHH-HHHHHH
Confidence 11111111 11111000 0 012222 2222222 1355668999999987421 113344
Q ss_pred hhccCCCCCeEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHH
Q 001918 576 DLLPRFGGETHIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAV 647 (996)
Q Consensus 576 ~~lp~~~~gsrIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~ 647 (996)
+.|.....++.+|++|.+ ..+. .+..++++.++.++..+.+.+.+.... ..+.+.+..|++.++|.|. ||.+
T Consensus 146 KTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 146 KTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444332345665555554 3442 247899999999999999987764222 2345567889999999884 4544
Q ss_pred HH
Q 001918 648 VG 649 (996)
Q Consensus 648 ~g 649 (996)
+-
T Consensus 226 Ld 227 (700)
T PRK12323 226 TD 227 (700)
T ss_pred HH
Confidence 43
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.3e-05 Score=98.94 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=106.6
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-C-CE-EEEEeCcCccHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-Y-KM-VLWVGGESRYIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F-~~-v~wi~~~~~~~~ 506 (996)
.-.+++|-+..+..+++ .+..+ . -...+.++|+.|+||||+|+.+++.+... . .. -|.. .
T Consensus 14 tFddIIGQe~Iv~~Lkn------aI~~~-r---l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~----C--- 76 (944)
T PRK14949 14 TFEQMVGQSHVLHALTN------ALTQQ-R---LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV----C--- 76 (944)
T ss_pred CHHHhcCcHHHHHHHHH------HHHhC-C---CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC----c---
Confidence 34578888888777763 01000 0 12357899999999999999999986532 1 10 1111 0
Q ss_pred HHHHHHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 507 QNYLNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 507 ~~l~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
.....+........ ..... ...++ ++..+.+..+...-..+++-++|||+++.+..- ....|.+.+-......
T Consensus 77 ~sC~~i~~g~~~DviEidAa-s~~kV----DdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~v 150 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAA-SRTKV----DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHV 150 (944)
T ss_pred hHHHHHhcCCCceEEEeccc-cccCH----HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-HHHHHHHHHhccCCCe
Confidence 01011111110000 00000 00000 112222222222212466779999999986320 0123333443333467
Q ss_pred EEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCCh-HHHHHH
Q 001918 586 HIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLT-MGLAVV 648 (996)
Q Consensus 586 rIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglP-LAL~~~ 648 (996)
++|++|.+.. +. ++..|++++|+.++..+++...+... ..-+.+.+..|++.++|.| .|+.++
T Consensus 151 rFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777666543 32 24789999999999999998876421 2234567889999999977 455554
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.3e-05 Score=88.04 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=101.8
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+...+.+.. .+..+ . -...+.++|+.|+||||+|+.+++.+..... ............
T Consensus 14 ~~~~iiGq~~~~~~l~~------~~~~~-~---~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~----~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISN------GLSLG-R---IHHAWLLSGTRGVGKTTIARLLAKSLNCQNG----ITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHH------HHHcC-C---CCeEEEEecCCCCCHHHHHHHHHHHhcCCCC----CCCCCCCCCHHH
Confidence 34567787777777663 01000 0 1235789999999999999999997653211 000000000011
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
..+................. .. +.+..+.+.+. .+++-++|+|+++....- ..+.|.+.+....+..
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~-------~v-~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRT-------KV-EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-SFNALLKTLEEPPQHI 150 (363)
T ss_pred HHHhcCCCCceEEecccccC-------CH-HHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-HHHHHHHHHhcCCCCe
Confidence 11111100000000000000 11 11223333331 245569999999987421 0123444444333467
Q ss_pred EEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 586 HIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 586 rIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
.+|++|.+. .+. ....+++++++.+|..+.+...+.... .-+.+.+..|++.++|-|-
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 777777553 232 237899999999999999888665322 2345667889999999774
No 33
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.19 E-value=5e-06 Score=85.67 Aligned_cols=52 Identities=23% Similarity=0.181 Sum_probs=33.0
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
+|+||+.+++++....+ .......+.+.|+|++|+|||+|.++++.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~--------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD--------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp --TT-HHHHHHHHHTTG--------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH--------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 48999999999985111 11111335899999999999999999999887663
No 34
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=3.1e-05 Score=80.69 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCCc
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYPI 625 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~~ 625 (996)
+.+-++|+||++....- ..+.|..++......+.+|++|++. .+. ....+++.+++.+|..+.+... +
T Consensus 95 ~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C----
Confidence 55678999999886321 1134556665444567777777654 231 2378999999999999999887 2
Q ss_pred ccHHHHHHHHHHhCCChH
Q 001918 626 TEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 626 ~~~~~a~~iv~~lgglPL 643 (996)
-..+.+..|++.++|.|.
T Consensus 169 i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ISEEAAELLLALAGGSPG 186 (188)
T ss_pred CCHHHHHHHHHHcCCCcc
Confidence 235668899999999875
No 35
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.16 E-value=7.5e-05 Score=84.97 Aligned_cols=195 Identities=15% Similarity=0.107 Sum_probs=105.1
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQN 508 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~ 508 (996)
-..|+|++...+++.. ..... ..+.+.|+|++|+||||+|+.+++.+.... ...+++++..-
T Consensus 14 ~~~~~g~~~~~~~L~~-------~~~~~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~----- 77 (337)
T PRK12402 14 LEDILGQDEVVERLSR-------AVDSP----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF----- 77 (337)
T ss_pred HHHhcCCHHHHHHHHH-------HHhCC----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh-----
Confidence 4678899998888873 11100 112478999999999999999999875432 23455543211
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-----cCCCEEEEEcCCCCcccccchHHHhhhccCCCC
Q 001918 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGG 583 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~ 583 (996)
.......+......... ............+....+.++.. ...+-+|||||++....- ....|..++.....
T Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~ 154 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHF--LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-AQQALRRIMEQYSR 154 (337)
T ss_pred hhcchhhhhcCcchhhh--hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-HHHHHHHHHHhccC
Confidence 00000011000000000 00000000011122222222221 133458999999876321 11345555544344
Q ss_pred CeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHH
Q 001918 584 ETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 584 gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLA 644 (996)
.+++|+||.... +. ....+++.+++.++..+++...+.... .-..+.+..|+++++|.+-.
T Consensus 155 ~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 155 TCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred CCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 577888875432 21 236788999999999999988765222 23456688889988886543
No 36
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=4.3e-05 Score=82.49 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=87.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|+|.+|+|||+|+.++++....+...+.|++.. +... ....+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-----~~~~------------------------------~~~~~ 87 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-----AAAG------------------------------RLRDA 87 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-----Hhhh------------------------------hHHHH
Confidence 489999999999999999999877665567777421 1000 01112
Q ss_pred HHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCCC--cC--------C---cceEEccCCCHH
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLPR--VM--------N---LEPLKLSYLSGV 610 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~~--~~--------~---~~~~~v~~L~~~ 610 (996)
.+.+ .+.-+|||||++.....- ....+..++.. ...|..||+||+... +. . ..++++++++.+
T Consensus 88 ~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e 165 (233)
T PRK08727 88 LEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDV 165 (233)
T ss_pred HHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHH
Confidence 2233 233589999998653210 01233344332 123567999998642 21 1 248899999999
Q ss_pred HHHHHHhhhcCCC-CcccHHHHHHHHHHhCCCh
Q 001918 611 EAMSLMQGSVKDY-PITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 611 EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglP 642 (996)
+-.+++.+++... -.-..+...-|++.++|-.
T Consensus 166 ~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 166 ARAAVLRERAQRRGLALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCH
Confidence 9999999876421 1234555677777776544
No 37
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=4.7e-05 Score=92.20 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=112.6
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHH
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQN 508 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~ 508 (996)
..-.+++|.+...+.|+. .+..+ . -...+.++|+.|+||||+|+.+++.+...-. .-+..|........
T Consensus 13 ~tFddIIGQe~vv~~L~~------ai~~~-r---l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~ 81 (709)
T PRK08691 13 KTFADLVGQEHVVKALQN------ALDEG-R---LHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQ 81 (709)
T ss_pred CCHHHHcCcHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHH
Confidence 345678998888888763 01000 0 1235899999999999999999987543211 00111111100000
Q ss_pred HHH--HHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001918 509 YLN--LWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 509 l~~--La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
+.. ....+.+.... ...+ ++..+.+..+...-..+++-++|||+++.+..- ....|.+.+......+.
T Consensus 82 i~~g~~~DvlEidaAs-----~~gV----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 82 IDAGRYVDLLEIDAAS-----NTGI----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVK 151 (709)
T ss_pred HhccCccceEEEeccc-----cCCH----HHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-HHHHHHHHHHhCCCCcE
Confidence 000 00001111000 0000 111122221111101356678999999876321 01234455533334677
Q ss_pred EEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHHh--cCC
Q 001918 587 IIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAILS--ELP 656 (996)
Q Consensus 587 IIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L~--~~~ 656 (996)
+|++|.+.. +. .+..+++.+++.++..+.+.+.+.... .-+.+.+..|++.++|-+ .++..+-..+. ...
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~ 231 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 777776543 32 236788889999999999988775322 235567889999999887 34444433222 223
Q ss_pred CCHHHHHHHH
Q 001918 657 INPSRLLDTI 666 (996)
Q Consensus 657 ~s~~e~l~~L 666 (996)
++.+.....+
T Consensus 232 It~e~V~~lL 241 (709)
T PRK08691 232 VAENDVRQMI 241 (709)
T ss_pred cCHHHHHHHH
Confidence 4544444443
No 38
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2e-05 Score=94.58 Aligned_cols=193 Identities=14% Similarity=0.085 Sum_probs=103.6
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|.+...+.+.. .+..+. -...+.++|+.|+||||+|+.+++.+.... ++...........
T Consensus 13 tFddVIGQe~vv~~L~~------aI~~gr----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~~~pCg~C~sC 78 (702)
T PRK14960 13 NFNELVGQNHVSRALSS------ALERGR----LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVTSTPCEVCATC 78 (702)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCCCCCCccCHHH
Confidence 44578888888777763 111110 123689999999999999999999764321 1111110000111
Q ss_pred HHHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEE
Q 001918 510 LNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHII 588 (996)
Q Consensus 510 ~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrII 588 (996)
..+..--.... ..... ....+ ++..+.+..+...-..++.-++|+|+|+.+..- ....|.+.+....+++.+|
T Consensus 79 ~~I~~g~hpDviEIDAA-s~~~V----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAA-SRTKV----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred HHHhcCCCCceEEeccc-ccCCH----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEE
Confidence 11111000000 00000 00000 111122222211111355668999999986321 1134555554433467788
Q ss_pred EEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCCh
Q 001918 589 ISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 589 ITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglP 642 (996)
++|.+.. + ..+..+++.+++.++..+.+...+... ..-+.+.+..|++.++|-+
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSL 213 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8776643 2 234789999999999999998877522 2334566778888888866
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.15 E-value=3.5e-05 Score=93.76 Aligned_cols=173 Identities=13% Similarity=0.106 Sum_probs=103.6
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-----CC--EEEEEeCcCc-
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-----YK--MVLWVGGESR- 503 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-----F~--~v~wi~~~~~- 503 (996)
..+.||+.|++++.. -+...-.......++-|+|++|.|||++++.+..++... .+ .+++|++..-
T Consensus 755 D~LPhREeEIeeLas------fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 755 KYLPCREKEIKEVHG------FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CcCCChHHHHHHHHH------HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 478899999999873 111100001122456799999999999999999876432 12 4678988765
Q ss_pred cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-hc-CCCEEEEEcCCCCcccccchHHHhhhccCC
Q 001918 504 YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-MR-NIPFLVIIDNLESEKDWWDDKLVMDLLPRF 581 (996)
Q Consensus 504 ~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~-~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~ 581 (996)
.....+..|..+|........ ....+.+..+...+ .. ....+||||++|.+..- ..+.|..++.+.
T Consensus 829 tp~sIYqvI~qqL~g~~P~~G-----------lsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-~QDVLYnLFR~~ 896 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNA-----------LNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-TQKVLFTLFDWP 896 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCcc-----------ccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-HHHHHHHHHHHh
Confidence 677778888877732221110 12334555555555 12 23458999999976421 113455454331
Q ss_pred -CCCeEEEE--EecCCCc-----CC------cceEEccCCCHHHHHHHHhhhcCC
Q 001918 582 -GGETHIII--STRLPRV-----MN------LEPLKLSYLSGVEAMSLMQGSVKD 622 (996)
Q Consensus 582 -~~gsrIII--TTR~~~~-----~~------~~~~~v~~L~~~EA~~Lf~~~a~~ 622 (996)
..+++|+| +|.+..+ .. ...+..++++.+|-.++|..++..
T Consensus 897 ~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 897 TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 12444444 4443222 11 134667899999999999988763
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.6e-05 Score=88.87 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC-CCc-----CCcceEEccCCCHHHHHHHHhhhcCCCC-
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL-PRV-----MNLEPLKLSYLSGVEAMSLMQGSVKDYP- 624 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~-~~~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~- 624 (996)
+++-+||+|+++....- ..+.|..++...++...+|++|.+ ..+ .....+++.+++.++....+...+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~-a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKE-AFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHH-HHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 45679999999876320 012344444333334555555544 233 1347899999999999999988775222
Q ss_pred cccHHHHHHHHHHhC-CChHHHHHHHHHHh--cCCCCHHHHHHHHhc
Q 001918 625 ITEVDALRVIEEKVG-RLTMGLAVVGAILS--ELPINPSRLLDTINR 668 (996)
Q Consensus 625 ~~~~~~a~~iv~~lg-glPLAL~~~gs~L~--~~~~s~~e~l~~L~~ 668 (996)
.-..+.+..|++.++ +++.++..+-.... +..++.+...+.+..
T Consensus 195 ~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~ 241 (472)
T PRK14962 195 EIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241 (472)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 234566788888775 56777777765432 223666666655543
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00013 Score=87.17 Aligned_cols=209 Identities=12% Similarity=0.113 Sum_probs=110.7
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc--CCCEEEEEeCcCccHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ--RYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~--~F~~v~wi~~~~~~~~~~l 509 (996)
.+++|-+.....+.. ....+ . -...+.++|++|+||||+|+.+++.+.. .+...||.......+..+.
T Consensus 14 ~dvvGq~~v~~~L~~------~i~~~-~---l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 14 DEVVGQEHVKEVLLA------ALRQG-R---LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHhcChHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 456777776666652 00000 0 1235799999999999999999997642 2333444421100111000
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
.. ..+.+.... . ...+.+..+++.+ ...++-++|||+++....- ....|...+......+
T Consensus 84 h~--dv~el~~~~-----~--------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~-a~naLLk~LEep~~~t 147 (504)
T PRK14963 84 HP--DVLEIDAAS-----N--------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS-AFNALLKTLEEPPEHV 147 (504)
T ss_pred CC--ceEEecccc-----c--------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHH-HHHHHHHHHHhCCCCE
Confidence 00 000000000 0 0011122233333 1345668999999875320 0133444443333355
Q ss_pred EEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHHHHHHHhc-CC
Q 001918 586 HIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAVVGAILSE-LP 656 (996)
Q Consensus 586 rIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~~gs~L~~-~~ 656 (996)
.+|++|.. ..+. ....+++.+++.++..+.+...+.... .-+.+.+..|++.++|.+- ++..+-..+.. ..
T Consensus 148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~ 227 (504)
T PRK14963 148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTP 227 (504)
T ss_pred EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 66655544 3331 237899999999999999998775222 2356678899999999884 44444333332 23
Q ss_pred CCHHHHHHHH
Q 001918 657 INPSRLLDTI 666 (996)
Q Consensus 657 ~s~~e~l~~L 666 (996)
++.+...+.+
T Consensus 228 It~~~V~~~l 237 (504)
T PRK14963 228 VTRKQVEEAL 237 (504)
T ss_pred CCHHHHHHHH
Confidence 4554444443
No 42
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00012 Score=83.93 Aligned_cols=202 Identities=10% Similarity=0.014 Sum_probs=106.8
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc-C-CC-EEEEE---eCc
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ-R-YK-MVLWV---GGE 501 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~-~-F~-~v~wi---~~~ 501 (996)
|....+++|-+...+.+.+ .+..+ . -..-..++|+.|+||+|+|..++..+-. . .. ..+-. ...
T Consensus 15 P~~~~~iiGq~~~~~~L~~------~~~~~-r---l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 15 PRETTALFGHAAAEAALLD------AYRSG-R---LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred CCchhhccChHHHHHHHHH------HHHcC-C---CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 3455678888887777763 00000 0 1124889999999999999999997642 2 11 10000 000
Q ss_pred CccHHHHHHHHHHHccCcc-C-ccc-CCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHH
Q 001918 502 SRYIRQNYLNLWSFLDVDV-G-IEN-CSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLV 574 (996)
Q Consensus 502 ~~~~~~~l~~La~~L~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L 574 (996)
..........+.. -..+. . ... ..++.... ...-..+.+..+.+.+. .+++-++|+|+++....- ....|
T Consensus 85 ~~~~c~~c~~i~~-~~HPDl~~i~~~~~~~~~~~-~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-aanaL 161 (365)
T PRK07471 85 IDPDHPVARRIAA-GAHGGLLTLERSWNEKGKRL-RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-AANAL 161 (365)
T ss_pred CCCCChHHHHHHc-cCCCCeEEEecccccccccc-cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-HHHHH
Confidence 0000011111111 00000 0 000 00010000 00011233445555551 356678999999976321 11344
Q ss_pred hhhccCCCCCeEEEEEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHH
Q 001918 575 MDLLPRFGGETHIIISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 575 ~~~lp~~~~gsrIIITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL 645 (996)
.+.+....+++.+|++|.+.. + .....+.+.+|+.++..+++.......+ .+....++..++|.|+..
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~---~~~~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP---DDPRAALAALAEGSVGRA 235 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHcCCCHHHH
Confidence 444544334677777777754 3 1237899999999999999998754322 222367899999999844
No 43
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=4.7e-05 Score=92.49 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=104.2
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+..++.+.. .+..+ . -...+.++|+.|+||||+|+.+++.+-.... ..--.|... ...
T Consensus 14 ~f~divGQe~vv~~L~~------~l~~~-r---l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~~~~pCg~C---~~C 79 (647)
T PRK07994 14 TFAEVVGQEHVLTALAN------ALDLG-R---LHHAYLFSGTRGVGKTTIARLLAKGLNCETG-ITATPCGEC---DNC 79 (647)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHhhhhccC-CCCCCCCCC---HHH
Confidence 44578888887777763 11000 0 1234789999999999999999987643210 000011111 111
Q ss_pred HHHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEE
Q 001918 510 LNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHII 588 (996)
Q Consensus 510 ~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrII 588 (996)
..+..--..+. ..+.. ...++ ++..+.+..+...-..+++-++|||+++.+..- ..+.|.+.+-...+.+++|
T Consensus 80 ~~i~~g~~~D~ieidaa-s~~~V----ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 80 REIEQGRFVDLIEIDAA-SRTKV----EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred HHHHcCCCCCceeeccc-ccCCH----HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEE
Confidence 11111000000 00000 00000 112222222221111456678999999986321 1133444443333456666
Q ss_pred EEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCChH-HHHHH
Q 001918 589 ISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLTM-GLAVV 648 (996)
Q Consensus 589 ITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglPL-AL~~~ 648 (996)
++|.+. .+. .+..|.+++|+.++..+.+...+... ...+.+....|++.++|.+- ||.++
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665554 342 23789999999999999998876421 12345667789999999764 45444
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.02 E-value=2.3e-05 Score=92.46 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=61.8
Q ss_pred hHHHhhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 923 LWQELALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 923 l~~~l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
++++.|+.+|++++|||.+|..+|+++||++++++|++|+++++|..||++...+.|++.++...+..
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 34445677999999999999999999999999999999999999999999999999999998877653
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=6.6e-05 Score=86.63 Aligned_cols=147 Identities=16% Similarity=0.249 Sum_probs=85.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|+|||+||+.++++....|-.+ .. ..+. ...++ .....+..+
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~~----~~l~--~~~~g-------------------~~~~~i~~~ 207 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRV-----VG----SELV--RKYIG-------------------EGARLVREI 207 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEec-----ch----HHHH--HHhhh-------------------HHHHHHHHH
Confidence 489999999999999999999876554211 10 0010 00010 111122223
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhcc---CC--CCCeEEEEEecCCCc-----C---Cc-ce
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLLP---RF--GGETHIIISTRLPRV-----M---NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~lp---~~--~~gsrIIITTR~~~~-----~---~~-~~ 601 (996)
.+......+.+|+||++|....- .+. ..+..++. .+ ..+..||.||..... . .. ..
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~ 287 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRI 287 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceE
Confidence 33333467789999999875210 000 12333331 11 236788888876432 2 12 57
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001918 602 LKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
++++.++.++..++|..++........-....+++.+.|..
T Consensus 288 i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 89999999999999999886432111112457778887764
No 46
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.01 E-value=3.9e-05 Score=74.82 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
+.+.|+|++|+|||+|++.+++.+......++++++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 4689999999999999999999876544567777543
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0002 Score=82.20 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=98.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCC-E-EEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYK-M-VLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~-~-v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
+.|+|.+|.|||++++.++.++..... . +++|+|..- +..+.+..|...++.... . .....+...
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~-~-----------g~~~~~~~~ 112 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL-T-----------GDSSLEILK 112 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC-C-----------CCchHHHHH
Confidence 789999999999999999999887643 2 799998877 888899999998862111 1 124557778
Q ss_pred HHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccCCCC-CeEE--EEEecCCCc-----------CCcceEEccCCC
Q 001918 544 RVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGG-ETHI--IISTRLPRV-----------MNLEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~-gsrI--IITTR~~~~-----------~~~~~~~v~~L~ 608 (996)
.+.+.+. .++.++||||++|.+..- +.+.|-.++..... .++| |..+-+... .+...+..++-+
T Consensus 113 ~l~~~~~~~~~~~IvvLDEid~L~~~-~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~ 191 (366)
T COG1474 113 RLYDNLSKKGKTVIVILDEVDALVDK-DGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYT 191 (366)
T ss_pred HHHHHHHhcCCeEEEEEcchhhhccc-cchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCC
Confidence 8888884 467889999999986432 11345555543221 3433 333433322 112447789999
Q ss_pred HHHHHHHHhhhcC
Q 001918 609 GVEAMSLMQGSVK 621 (996)
Q Consensus 609 ~~EA~~Lf~~~a~ 621 (996)
.+|-.+++..++.
T Consensus 192 a~el~~Il~~R~~ 204 (366)
T COG1474 192 AEELYDILRERVE 204 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 48
>PLN03025 replication factor C subunit; Provisional
Probab=98.00 E-value=6.7e-05 Score=84.93 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=95.5
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc-CCC-EEEEEeCcCccHH
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ-RYK-MVLWVGGESRYIR 506 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~-~v~wi~~~~~~~~ 506 (996)
..-.+++|.+..+..++. -...+ ..+-+.++|++|+||||+|..+++.+.. .|. .++-+++....
T Consensus 10 ~~l~~~~g~~~~~~~L~~------~~~~~-----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~-- 76 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQV------IARDG-----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR-- 76 (319)
T ss_pred CCHHHhcCcHHHHHHHHH------HHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc--
Confidence 344567787777766652 00000 1123679999999999999999998643 332 12222211100
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH------hcCCCEEEEEcCCCCcccccchHHHhhhccC
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL------MRNIPFLVIIDNLESEKDWWDDKLVMDLLPR 580 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L------~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~ 580 (996)
..+...+.++... ..++.-++|||++|....- ....|..++..
T Consensus 77 ------------------------------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-aq~aL~~~lE~ 125 (319)
T PLN03025 77 ------------------------------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-AQQALRRTMEI 125 (319)
T ss_pred ------------------------------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-HHHHHHHHHhc
Confidence 0001111111111 0234568999999986421 12345555544
Q ss_pred CCCCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001918 581 FGGETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 581 ~~~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
.+..+++|+++... .+. ....+++++++.++..+.+...+.... .-..+.+..|++.++|-.
T Consensus 126 ~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 126 YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred ccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 44467777777543 221 236899999999999988888765211 123455667777776643
No 49
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00015 Score=91.01 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=112.4
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~ 510 (996)
-.+++|.+...+.|.+ .+..+ . -...+.++|+.|+||||+|+.+++.+...... -.-.|... .+..
T Consensus 14 f~eiiGqe~v~~~L~~------~i~~~-r---i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~-~~~pCg~C---~sC~ 79 (824)
T PRK07764 14 FAEVIGQEHVTEPLST------ALDSG-R---INHAYLFSGPRGCGKTSSARILARSLNCVEGP-TSTPCGEC---DSCV 79 (824)
T ss_pred HHHhcCcHHHHHHHHH------HHHhC-C---CCceEEEECCCCCCHHHHHHHHHHHhCcccCC-CCCCCccc---HHHH
Confidence 3467888877777763 01000 1 12357899999999999999999976432100 00011111 0111
Q ss_pred HHHHH----ccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCC
Q 001918 511 NLWSF----LDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG 582 (996)
Q Consensus 511 ~La~~----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~ 582 (996)
.+..- +.+.. .+.. .. ...++ +..+++.+ ..++.-++|||+++.+..- ..+.|.++|....
T Consensus 80 ~~~~g~~~~~dv~e-idaa-s~-------~~Vd~-iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP 148 (824)
T PRK07764 80 ALAPGGPGSLDVTE-IDAA-SH-------GGVDD-ARELRERAFFAPAESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPP 148 (824)
T ss_pred HHHcCCCCCCcEEE-eccc-cc-------CCHHH-HHHHHHHHHhchhcCCceEEEEechhhcCHH-HHHHHHHHHhCCC
Confidence 11100 00000 0000 00 01111 22233322 1345557889999987431 1245666665544
Q ss_pred CCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHH--
Q 001918 583 GETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAIL-- 652 (996)
Q Consensus 583 ~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L-- 652 (996)
..+.+|++|.+. .+. ...+|++..++.++..+++.+.+.... ..+.+.+..|++.++|-+ .++..+-..+
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~ 228 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAG 228 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 566666666443 332 247899999999999999888764211 234556788999999977 3443333332
Q ss_pred -hcCCCCHHHHHHHHh
Q 001918 653 -SELPINPSRLLDTIN 667 (996)
Q Consensus 653 -~~~~~s~~e~l~~L~ 667 (996)
....++.+...+.+.
T Consensus 229 ~~~~~IT~e~V~allg 244 (824)
T PRK07764 229 AGPEGVTYERAVALLG 244 (824)
T ss_pred cCCCCCCHHHHHHHhc
Confidence 223455555554443
No 50
>PRK09087 hypothetical protein; Validated
Probab=97.99 E-value=9.9e-05 Score=79.23 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.+.|||++|+|||+|+..++... ...|++.. .+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~-------------~~~-------------------------~~ 81 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN-------------EIG-------------------------SD 81 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH-------------Hcc-------------------------hH
Confidence 358999999999999999887653 22355310 000 00
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccC-CCCCeEEEEEecCCC--c----C-------CcceEEccCCCHH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPR-FGGETHIIISTRLPR--V----M-------NLEPLKLSYLSGV 610 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~-~~~gsrIIITTR~~~--~----~-------~~~~~~v~~L~~~ 610 (996)
+...+ .. -+|+|||++.... +.+.+..++.. ...|..||||++... + . ...++++++++.+
T Consensus 82 ~~~~~-~~--~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e 156 (226)
T PRK09087 82 AANAA-AE--GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDA 156 (226)
T ss_pred HHHhh-hc--CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHH
Confidence 11112 11 2788899986421 23455555532 123678999987521 1 1 1268999999999
Q ss_pred HHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHH
Q 001918 611 EAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAV 647 (996)
Q Consensus 611 EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~ 647 (996)
+-.+++.+.+.... .-..+...-|++.+.|-.-++..
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 99999998886322 23456677888888877766654
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=85.37 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=112.2
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+...+.+.. ....+ . -..-+.++|+.|+||||+|+.++..+-..+... .-.+. .....
T Consensus 11 ~f~dliGQe~vv~~L~~------a~~~~-r---i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-~~pCg---~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRN------AFTLN-K---IPQSILLVGASGVGKTTCARIISLCLNCSNGPT-SDPCG---TCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-CCCcc---ccHHH
Confidence 34567887777777762 00000 0 112488999999999999999998653221100 00000 11111
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEE
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIII 589 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIII 589 (996)
..+......+.-........++ ++..+.++.+...-..++.-++|+|+++.+..- ..+.|.+++....+.+.+|+
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~v----ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSV----DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred HHHhccCCCCEEEEecccCCCH----HHHHHHHHHHHhccccCCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEE
Confidence 1221111111000000000000 111122222111101345668999999876331 11445555644445677776
Q ss_pred EecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHHHHHHHh--cCCCCH
Q 001918 590 STRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAVVGAILS--ELPINP 659 (996)
Q Consensus 590 TTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~~gs~L~--~~~~s~ 659 (996)
+|.+ +.+. ....+++.+++.++..+.+...+.... .-+.+.+..|++.++|-+- ++..+-..+. +..++.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 6644 3331 247899999999999999998876322 2356668889999988774 4443322221 123566
Q ss_pred HHHHHHH
Q 001918 660 SRLLDTI 666 (996)
Q Consensus 660 ~e~l~~L 666 (996)
+...+.+
T Consensus 232 e~V~~ll 238 (491)
T PRK14964 232 KSVRDLL 238 (491)
T ss_pred HHHHHHH
Confidence 5555444
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00011 Score=88.10 Aligned_cols=200 Identities=14% Similarity=0.094 Sum_probs=104.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+..+..+.. .+..+ .....+.++|+.|+||||+|+.+++.+..... ............
T Consensus 14 ~f~diiGq~~~v~~L~~------~i~~~----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~----~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVH------ALETQ----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTG----VTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHH------HHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCCcccHHH
Confidence 34467787777776653 01000 01235789999999999999999987643211 000000000000
Q ss_pred HHHHH--HccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001918 510 LNLWS--FLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 510 ~~La~--~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
..+.. ...+. ..... ....+ ++..+.+..+...-..+++-++|+|+++....- ..+.|.+++......+.+
T Consensus 80 ~~i~~~~~~dli-eidaa-s~~gv----d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 80 VAINNNSFIDLI-EIDAA-SRTGV----EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKF 152 (546)
T ss_pred HHHhcCCCCceE-Eeecc-cccCH----HHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceE
Confidence 01100 00000 00000 00000 112222222222212456779999999876321 113455555443345666
Q ss_pred EEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCCh-HHHHHHHH
Q 001918 588 IISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLT-MGLAVVGA 650 (996)
Q Consensus 588 IITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglP-LAL~~~gs 650 (996)
|++|.+.. +. ....+++.+++.++..+.+...+... ..-+.+.+..|++.++|-+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 65555443 32 24789999999999988888765422 2335566788999999955 45555543
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.98 E-value=2.8e-05 Score=91.73 Aligned_cols=90 Identities=26% Similarity=0.254 Sum_probs=73.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCCch
Q 001918 870 ITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQFD 949 (996)
Q Consensus 870 ~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr~~ 949 (996)
...+++..|..+.+.|.+.++.. .| --|+.+++.++++|.+|..+++|.
T Consensus 210 ~~~g~~e~A~~l~k~Al~~l~k~-------------------~G------------~~hl~va~~l~~~a~~y~~~~k~~ 258 (508)
T KOG1840|consen 210 AVQGRLEKAEPLCKQALRILEKT-------------------SG------------LKHLVVASMLNILALVYRSLGKYD 258 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHc-------------------cC------------ccCHHHHHHHHHHHHHHHHhccHH
Confidence 34577777777777766654432 01 124668889999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 950 MGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 950 eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+|..+|++||.|++.++|++||.++..++|||.+|--.|+.
T Consensus 259 eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf 299 (508)
T KOG1840|consen 259 EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF 299 (508)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh
Confidence 99999999999999999999999999999999999665543
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00019 Score=81.15 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~ 538 (996)
....++|+.|+||||+|+.++..+.. +.|...|.......+ ..
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i-------------------------------~v 75 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSI-------------------------------GV 75 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCC-------------------------------CH
Confidence 36789999999999999999987632 223223322111000 01
Q ss_pred HHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc-C-----CcceEEccCCC
Q 001918 539 EAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV-M-----NLEPLKLSYLS 608 (996)
Q Consensus 539 ~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~-~-----~~~~~~v~~L~ 608 (996)
++ +..+.+.+ ..+++-++|+|+++....- ....|.+.+...++++.+|++|.+..- . .+..+++.+++
T Consensus 76 ~~-ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~ 153 (313)
T PRK05564 76 DD-IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS 153 (313)
T ss_pred HH-HHHHHHHHhcCcccCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC
Confidence 11 11222222 1345667888888765321 125677777655568899988876542 1 24789999999
Q ss_pred HHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHH
Q 001918 609 GVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL 645 (996)
.++....+....... ..+.+..++.+++|.|.-+
T Consensus 154 ~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 154 KEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred HHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999887765322 2344678899999988643
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.97 E-value=0.00013 Score=78.96 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=86.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|+|++|+|||+|+..+++........+.|++... . .. ....+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~-----~----~~--------------------------~~~~~ 91 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK-----R----AW--------------------------FVPEV 91 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH-----H----hh--------------------------hhHHH
Confidence 5899999999999999999998776656677875321 0 00 00112
Q ss_pred HHHHhcCCCEEEEEcCCCCccc--ccchHHHhhhccC-C-CCCeEEEEEecCCC--c----C----C---cceEEccCCC
Q 001918 546 RKELMRNIPFLVIIDNLESEKD--WWDDKLVMDLLPR-F-GGETHIIISTRLPR--V----M----N---LEPLKLSYLS 608 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~--~~~~~~L~~~lp~-~-~~gsrIIITTR~~~--~----~----~---~~~~~v~~L~ 608 (996)
.+.+ .. --+|||||++.... .|. ..+..++.. . .++.+||+||+... + . . ..++++++++
T Consensus 92 ~~~~-~~-~dlliiDdi~~~~~~~~~~-~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~ 168 (235)
T PRK08084 92 LEGM-EQ-LSLVCIDNIECIAGDELWE-MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLS 168 (235)
T ss_pred HHHh-hh-CCEEEEeChhhhcCCHHHH-HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCC
Confidence 2233 11 23788999986521 111 233343322 1 11357999998652 1 1 1 1689999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
.++-.+++.+++.... .-..+...-|++.+.|-.-.+
T Consensus 169 ~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 169 DEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHH
Confidence 9999999988664221 234555667777776654443
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.95 E-value=4.3e-05 Score=94.55 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=84.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|++|+||||||+.+++.....|. .+++.. .+.. +..+.+..+
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~~----~~i~--------------------------dir~~i~~a 100 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFS---SLNAVL----AGVK--------------------------DLRAEVDRA 100 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcce---eehhhh----hhhH--------------------------HHHHHHHHH
Confidence 4789999999999999999987765542 222110 0000 111222223
Q ss_pred HHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEE--ecCCC--c-----CCcceEEccCCCHHHHHHH
Q 001918 546 RKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIS--TRLPR--V-----MNLEPLKLSYLSGVEAMSL 615 (996)
Q Consensus 546 ~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIIT--TR~~~--~-----~~~~~~~v~~L~~~EA~~L 615 (996)
.+.+. .+++.+||||+++.... .+-..+++....+..++|+ |.+.. + ....++++++|+.++...+
T Consensus 101 ~~~l~~~~~~~IL~IDEIh~Ln~----~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~I 176 (725)
T PRK13341 101 KERLERHGKRTILFIDEVHRFNK----AQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQL 176 (725)
T ss_pred HHHhhhcCCceEEEEeChhhCCH----HHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHH
Confidence 33331 25677999999987532 2333344433345555553 33332 1 1236899999999999999
Q ss_pred HhhhcC-------CC-CcccHHHHHHHHHHhCCCh
Q 001918 616 MQGSVK-------DY-PITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 616 f~~~a~-------~~-~~~~~~~a~~iv~~lgglP 642 (996)
+...+. .. ..-..+....|++++.|.-
T Consensus 177 L~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 177 LKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 988764 11 1234566788888888754
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.95 E-value=0.00037 Score=76.77 Aligned_cols=170 Identities=13% Similarity=0.110 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
-+.+||++|+||||||+-++..-+.+ ...||..... .-.+ +..+.++.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~-----------------------------dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTN-----------------------------DVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchH-----------------------------HHHHHHHH
Confidence 47899999999999999998854433 2556643321 1111 12222222
Q ss_pred HHHHH-hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEE--EecCCCc-------CCcceEEccCCCHHHHHH
Q 001918 545 VRKEL-MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIII--STRLPRV-------MNLEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L-~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIII--TTR~~~~-------~~~~~~~v~~L~~~EA~~ 614 (996)
-++.. ...+|..|.+|.|.... ..|-.-+||.-.+|.-++| ||-++.. ..+.++.+++|+.++-..
T Consensus 213 aq~~~~l~krkTilFiDEiHRFN----ksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~ 288 (554)
T KOG2028|consen 213 AQNEKSLTKRKTILFIDEIHRFN----KSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVT 288 (554)
T ss_pred HHHHHhhhcceeEEEeHHhhhhh----hhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHH
Confidence 22222 15788999999998753 2455567887666777777 7777765 234899999999999998
Q ss_pred HHhhhcC----------CCCcccHHHHHHHHHH----hCCCh----HHHHHHHHH--HhcC-----CCCHHHHHHHHhcC
Q 001918 615 LMQGSVK----------DYPITEVDALRVIEEK----VGRLT----MGLAVVGAI--LSEL-----PINPSRLLDTINRM 669 (996)
Q Consensus 615 Lf~~~a~----------~~~~~~~~~a~~iv~~----lgglP----LAL~~~gs~--L~~~-----~~s~~e~l~~L~~~ 669 (996)
+|.+... ..+.....+-..|+++ +.|=. =||++..+. .+.. .+++++..+.|++.
T Consensus 289 iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 289 ILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 8887332 1222122333444444 44422 123443222 2222 25788888888774
Q ss_pred C
Q 001918 670 P 670 (996)
Q Consensus 670 ~ 670 (996)
.
T Consensus 369 ~ 369 (554)
T KOG2028|consen 369 H 369 (554)
T ss_pred c
Confidence 3
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00021 Score=83.73 Aligned_cols=215 Identities=14% Similarity=0.025 Sum_probs=109.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+..++.+.. .+..+ . -...+.++|+.|+||||+|+.+++.+...... -...+..... .
T Consensus 16 ~f~dvVGQe~iv~~L~~------~i~~~-r---i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~-~~~pCg~C~s---C 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQN------ALKSG-K---IGHAYIFFGPRGVGKTTIARILAKRLNCENPI-GNEPCNECTS---C 81 (484)
T ss_pred CHHHHhChHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHhcCccccc-CccccCCCcH---H
Confidence 44567887777776652 00000 0 01247899999999999999999976432110 0011111100 1
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhc---cCCCCCeE
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLL---PRFGGETH 586 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~l---p~~~~gsr 586 (996)
..+..................+ ++..+..+.+...-..++.-++|+|+++.+.. .....++ ........
T Consensus 82 ~~i~~g~~~dviEIdaas~~gV----d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~----~A~NALLKtLEEPp~~vi 153 (484)
T PRK14956 82 LEITKGISSDVLEIDAASNRGI----ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD----QSFNALLKTLEEPPAHIV 153 (484)
T ss_pred HHHHccCCccceeechhhcccH----HHHHHHHHHHHhhhhcCCCEEEEEechhhcCH----HHHHHHHHHhhcCCCceE
Confidence 1111111100000000000000 11122222222111135667999999998632 3444443 22223555
Q ss_pred EEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHH--hcCC
Q 001918 587 IIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAIL--SELP 656 (996)
Q Consensus 587 IIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L--~~~~ 656 (996)
+|++|.+ ..+. ++..|.+.+++.++..+.+...+.... .-+.+.+..|++..+|-+ -||..+-..+ ....
T Consensus 154 FILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~ 233 (484)
T PRK14956 154 FILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSK 233 (484)
T ss_pred EEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCC
Confidence 5555544 3442 236799999999999999888765322 235667889999999988 3333332211 2233
Q ss_pred CCHHHHHHHH
Q 001918 657 INPSRLLDTI 666 (996)
Q Consensus 657 ~s~~e~l~~L 666 (996)
++.+...+.+
T Consensus 234 it~~~V~~~l 243 (484)
T PRK14956 234 LTGVKIRKMI 243 (484)
T ss_pred cCHHHHHHHh
Confidence 5555554444
No 59
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=0.00013 Score=83.20 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=108.4
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC----CCEEEEEeCcCc
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR----YKMVLWVGGESR 503 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~----F~~v~wi~~~~~ 503 (996)
|.....++|-+...+.+.. .+..+ .....+.|+|+.|+||||+|..++..+-.. +....... ..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~------a~~~g----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~--~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQ------AYREG----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD--PD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHH------HHHcC----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC--CC
Confidence 4456678888888887763 11111 022358999999999999999999986542 21111110 00
Q ss_pred cHHHHHHHHHHH-----ccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHH
Q 001918 504 YIRQNYLNLWSF-----LDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLV 574 (996)
Q Consensus 504 ~~~~~l~~La~~-----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L 574 (996)
........++.. +.+..... ++..... ..-..+.+..+.+.+. .++.-++|+|+++....- ....|
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~---~~~~~~~-~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-aanaL 161 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFD---EKTGKFK-TAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-AANAI 161 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccc---ccccccc-ccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-HHHHH
Confidence 011122222211 00100000 0000000 0011233445566662 355668999999986321 11334
Q ss_pred hhhccCCCCCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHH
Q 001918 575 MDLLPRFGGETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 575 ~~~lp~~~~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL 645 (996)
.+.+.....++.+|++|... .+. ....+++++++.++..+++.......+ -+.+.+..+++.++|.|...
T Consensus 162 Lk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~A 237 (351)
T PRK09112 162 LKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKA 237 (351)
T ss_pred HHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHH
Confidence 44443333345555555443 332 237999999999999999998543222 23555788999999999743
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=97.93 E-value=9.6e-05 Score=88.45 Aligned_cols=177 Identities=15% Similarity=0.195 Sum_probs=101.1
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHH
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~ 507 (996)
|..-.+++|.+...+++..-...+. .+. ..+.+.|+|++|+||||+|..+++.+. |+ ++-+++.......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~---~g~----~~~~lLL~GppG~GKTtla~ala~el~--~~-~ielnasd~r~~~ 79 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL---KGK----PKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELNASDQRTAD 79 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh---cCC----CCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEcccccccHH
Confidence 3445678999988888763100000 111 135799999999999999999999863 33 2233332211111
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc---chHHHhhhccCCCCC
Q 001918 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW---DDKLVMDLLPRFGGE 584 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~---~~~~L~~~lp~~~~g 584 (996)
.+..+...... ...+...++-+||||+++....-. ....|..++.. .+
T Consensus 80 ~i~~~i~~~~~---------------------------~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~ 130 (482)
T PRK04195 80 VIERVAGEAAT---------------------------SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AK 130 (482)
T ss_pred HHHHHHHHhhc---------------------------cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CC
Confidence 11111111000 000101367899999999863210 11344555543 24
Q ss_pred eEEEEEecCCCc--C-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 585 THIIISTRLPRV--M-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 585 srIIITTR~~~~--~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
..||+|+.+..- . ....+++++++..+....+...+.... .-..+.+..|++.++|-.-
T Consensus 131 ~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLR 197 (482)
T ss_pred CCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 567777655322 1 126789999999999998888774221 2345678889988887543
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.92 E-value=5.6e-05 Score=87.80 Aligned_cols=176 Identities=15% Similarity=0.222 Sum_probs=97.5
Q ss_pred hhccccchHhhhhhhhc-------CCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCcc
Q 001918 432 IEMQSTEAPQRQKTKSS-------GRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRY 504 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~-------~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~ 504 (996)
..+.|++...+++.+.. ..+.... ....+-|.|+|++|+|||+||++++++....| +.+.+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-----~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVG-----IEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-----CCCCCceEEECCCCCChHHHHHHHHHHhCCCE---EEeeh----
Confidence 46789999888876410 1111110 01223489999999999999999999865442 11211
Q ss_pred HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc-----c--ch---HHH
Q 001918 505 IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW-----W--DD---KLV 574 (996)
Q Consensus 505 ~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~-----~--~~---~~L 574 (996)
. .+.... .+ .....+..+.+......+.+|+||++|.+..- . +. ..+
T Consensus 199 -~----~l~~~~---~g---------------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l 255 (389)
T PRK03992 199 -S----ELVQKF---IG---------------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL 255 (389)
T ss_pred -H----HHhHhh---cc---------------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHH
Confidence 0 111100 00 11122333333333467889999999975100 0 00 123
Q ss_pred hhhccC---C--CCCeEEEEEecCCCc-----C---Cc-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCC
Q 001918 575 MDLLPR---F--GGETHIIISTRLPRV-----M---NL-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGR 640 (996)
Q Consensus 575 ~~~lp~---~--~~gsrIIITTR~~~~-----~---~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgg 640 (996)
..++.. + ..+..||.||..... . .. ..++++.++.++-.++|..++...+.........+++.+.|
T Consensus 256 ~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g 335 (389)
T PRK03992 256 MQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEG 335 (389)
T ss_pred HHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCC
Confidence 333321 1 125677878876443 1 12 57999999999999999988764331111114566676666
Q ss_pred Ch
Q 001918 641 LT 642 (996)
Q Consensus 641 lP 642 (996)
.-
T Consensus 336 ~s 337 (389)
T PRK03992 336 AS 337 (389)
T ss_pred CC
Confidence 54
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.91 E-value=7.4e-05 Score=80.25 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..+.|+|.+|+|||+||..+++.....-..+.++++... . ..+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~-----~----~~~---------------------------- 85 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP-----L----LAF---------------------------- 85 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh-----H----HHH----------------------------
Confidence 358999999999999999999976544445666753211 0 000
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCe-EEEEEecCCCc----C-----C---cceEEccCCCHH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGET-HIIISTRLPRV----M-----N---LEPLKLSYLSGV 610 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gs-rIIITTR~~~~----~-----~---~~~~~v~~L~~~ 610 (996)
... ...-+||+||++..... ....|..++... ..+. .||+|++.... . . ...++|++|+.+
T Consensus 86 --~~~--~~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 86 --DFD--PEAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDA 160 (227)
T ss_pred --hhc--ccCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHH
Confidence 011 22336888999875332 223444444321 1233 46666664321 1 1 258899999998
Q ss_pred HHHHHHhhhcCCC-CcccHHHHHHHHHHhCCChHHHHHHHHHH
Q 001918 611 EAMSLMQGSVKDY-PITEVDALRVIEEKVGRLTMGLAVVGAIL 652 (996)
Q Consensus 611 EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglPLAL~~~gs~L 652 (996)
+-..++...+... ..-..+....|++...|.+..|..+-..|
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8878877654321 12345678888889999998876665554
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00017 Score=85.92 Aligned_cols=195 Identities=17% Similarity=0.099 Sum_probs=100.8
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCC---EEEEEeCcCccHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYK---MVLWVGGESRYIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~---~v~wi~~~~~~~~ 506 (996)
.-.+++|-+...+.+.. ....+ . -..-+.++|+.|+||||+|+.+++.+-.... +-.+..+...
T Consensus 19 ~f~dliGq~~vv~~L~~------ai~~~-r---i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C--- 85 (507)
T PRK06645 19 NFAELQGQEVLVKVLSY------TILND-R---LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC--- 85 (507)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC---
Confidence 34567777777776652 00000 0 1134889999999999999999997643211 0001111111
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
.....+.................. .++..+.++.+...-..+++-++|+|+++....- ....|.+++....+.+.
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~----vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~-a~naLLk~LEepp~~~v 160 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTS----VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG-AFNALLKTLEEPPPHII 160 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCC----HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-HHHHHHHHHhhcCCCEE
Confidence 011111110000000000000000 0112222222211101356678999999976321 01345555544444566
Q ss_pred EEEEe-cCCCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001918 587 IIIST-RLPRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 587 IIITT-R~~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
+|++| +...+. ....+++.+++.+|..+++...+.... .-+.+.+..|++.++|-+
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSA 223 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 66544 433442 236799999999999999998886322 234566788999999876
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.91 E-value=0.00018 Score=81.11 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=100.5
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC--cCccHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG--ESRYIRQ 507 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~--~~~~~~~ 507 (996)
.-..++|++..+..+.. .+..+ ..+.+.|+|.+|+||||+|+.+++.+........++.. ....-
T Consensus 15 ~~~~~~g~~~~~~~l~~------~i~~~-----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~-- 81 (319)
T PRK00440 15 TLDEIVGQEEIVERLKS------YVKEK-----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG-- 81 (319)
T ss_pred cHHHhcCcHHHHHHHHH------HHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc--
Confidence 34568899988888873 11111 11247999999999999999999986543211112211 11000
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-----cCCCEEEEEcCCCCcccccchHHHhhhccCCC
Q 001918 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG 582 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~ 582 (996)
.......+.+... ...+-+||+|+++....- ....|..++....
T Consensus 82 ------------------------------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-~~~~L~~~le~~~ 130 (319)
T PRK00440 82 ------------------------------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-AQQALRRTMEMYS 130 (319)
T ss_pred ------------------------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-HHHHHHHHHhcCC
Confidence 0000111111110 134568999999876321 1135666655444
Q ss_pred CCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHH
Q 001918 583 GETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 583 ~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLA 644 (996)
..+.+|+++... .+. ....+++++++.+|...++...+.... .-..+.+..+++.++|-+--
T Consensus 131 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 131 QNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 457777776443 221 236789999999999999988775322 23456678888888877643
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00026 Score=85.53 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=66.6
Q ss_pred cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC
Q 001918 551 RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP 624 (996)
Q Consensus 551 ~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~ 624 (996)
.+++-+||||+++.+..- ....|.+++........+|++|.+. .+. ....+++++++.+|..+.|...+....
T Consensus 117 ~g~~kVIIIDEad~Lt~~-a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTRE-AFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred cCCceEEEEEChHhCCHH-HHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC
Confidence 356678999999986321 1134555553332356666666553 332 237899999999999999988665322
Q ss_pred -cccHHHHHHHHHHhCCC-hHHHHHHHHHH
Q 001918 625 -ITEVDALRVIEEKVGRL-TMGLAVVGAIL 652 (996)
Q Consensus 625 -~~~~~~a~~iv~~lggl-PLAL~~~gs~L 652 (996)
.-+.+.+..|++..+|- -.||..+...+
T Consensus 196 i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 196 VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23566788899999995 47887776554
No 66
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.89 E-value=0.00023 Score=81.71 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=101.8
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLN 511 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~ 511 (996)
..++|.+.....+.+ .+..+. -...+.++|++|+||||+|+.++..+...- ..-+-.+... . ....
T Consensus 14 ~~iig~~~~~~~l~~------~~~~~~----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~-~~~~~~c~~c-~--~c~~ 79 (355)
T TIGR02397 14 EDVIGQEHIVQTLKN------AIKNGR----IAHAYLFSGPRGTGKTSIARIFAKALNCQN-GPDGEPCNEC-E--SCKE 79 (355)
T ss_pred hhccCcHHHHHHHHH------HHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCCCC-H--HHHH
Confidence 467888888877763 111110 123578999999999999999998865321 0000011110 0 0000
Q ss_pred HHHHccCccC-cccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001918 512 LWSFLDVDVG-IENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 512 La~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
+......... ..+. .. ... +.+..+.+.+ ..+++-++|+|+++....- ....+.+.+....+.+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~-------~~~-~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 80 INSGSSLDVIEIDAA-SN-------NGV-DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-AFNALLKTLEEPPEHVV 149 (355)
T ss_pred HhcCCCCCEEEeecc-cc-------CCH-HHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-HHHHHHHHHhCCcccee
Confidence 1100000000 0000 00 011 1122222222 1245568899999876320 11345555544444677
Q ss_pred EEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHH
Q 001918 587 IIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 587 IIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~ 646 (996)
+|++|.+.. +. ....+++++++.++..+++...+.... .-..+.+..+++.++|-|..+.
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~ 216 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDAL 216 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHH
Confidence 777775543 21 236889999999999999988765222 2245668889999999886543
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00014 Score=88.31 Aligned_cols=190 Identities=14% Similarity=0.074 Sum_probs=100.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC----CEEEEEeCcCccH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY----KMVLWVGGESRYI 505 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F----~~v~wi~~~~~~~ 505 (996)
.-.+++|-+...+.|.. .+..+ . -...+.++|+.|+||||+|+.+++.+-..- .+...-.|...
T Consensus 14 ~f~dviGQe~vv~~L~~------~l~~~-r---l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C-- 81 (618)
T PRK14951 14 SFSEMVGQEHVVQALTN------ALTQQ-R---LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC-- 81 (618)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc--
Confidence 34567887776666663 01000 0 123578999999999999999998764211 11111112111
Q ss_pred HHHHHHHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccC
Q 001918 506 RQNYLNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPR 580 (996)
Q Consensus 506 ~~~l~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~ 580 (996)
.....+..--..+. ..+.. . + ...++ +..+.+.+ ..++.-++|||+|+.+..- ....|.+.+..
T Consensus 82 -~~C~~i~~g~h~D~~eldaa---s---~--~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-a~NaLLKtLEE 150 (618)
T PRK14951 82 -QACRDIDSGRFVDYTELDAA---S---N--RGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-AFNAMLKTLEE 150 (618)
T ss_pred -HHHHHHHcCCCCceeecCcc---c---c--cCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHH-HHHHHHHhccc
Confidence 11111111000000 00000 0 0 01111 12222222 1234458899999986321 11234444443
Q ss_pred CCCCeEEEEEecCC-Cc-----CCcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001918 581 FGGETHIIISTRLP-RV-----MNLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 581 ~~~gsrIIITTR~~-~~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
....+.+|++|.+. .+ .....++++.|+.++..+.+...+.... .-+.+.+..|++.++|-+
T Consensus 151 PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 151 PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSM 219 (618)
T ss_pred CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33466777666553 33 2247899999999999999988765222 234566788999999866
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00027 Score=85.05 Aligned_cols=211 Identities=17% Similarity=0.120 Sum_probs=109.7
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~ 510 (996)
-.+++|-+...+.+... +..+ . -...+.++|+.|+||||+|+.++..+..... .-.-.+... ....
T Consensus 15 f~divGq~~v~~~L~~~------i~~~-~---~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C---~~C~ 80 (527)
T PRK14969 15 FSELVGQEHVVRALTNA------LEQQ-R---LHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVC---SACL 80 (527)
T ss_pred HHHhcCcHHHHHHHHHH------HHcC-C---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCC---HHHH
Confidence 34677877777776630 0000 0 1235789999999999999999987643211 000011111 0111
Q ss_pred HHHHH--ccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCC
Q 001918 511 NLWSF--LDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGE 584 (996)
Q Consensus 511 ~La~~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~g 584 (996)
.+..- ..+. ..+.. .. ... +.+..+.+.+ ..+++-++|+|+++....- ....|.+.+......
T Consensus 81 ~i~~~~~~d~~-ei~~~---~~-----~~v-d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~ 149 (527)
T PRK14969 81 EIDSGRFVDLI-EVDAA---SN-----TQV-DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEH 149 (527)
T ss_pred HHhcCCCCcee-Eeecc---cc-----CCH-HHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCC
Confidence 11110 0000 00000 00 011 1122222222 1355678999999976421 113455555443346
Q ss_pred eEEEEEecCCC-cC-C----cceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHHh--c
Q 001918 585 THIIISTRLPR-VM-N----LEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAILS--E 654 (996)
Q Consensus 585 srIIITTR~~~-~~-~----~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L~--~ 654 (996)
+.+|++|.+.. +. . ...+++++++.++..+.+...+.... .-+.+.+..|++.++|.+ -|+..+-..+. .
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~ 229 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG 229 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 66666665543 32 2 37899999999999998887764211 234566788999999976 45555433322 2
Q ss_pred CCCCHHHHHHHH
Q 001918 655 LPINPSRLLDTI 666 (996)
Q Consensus 655 ~~~s~~e~l~~L 666 (996)
..++.++..+.+
T Consensus 230 ~~I~~~~v~~~~ 241 (527)
T PRK14969 230 GTVNESEVRAML 241 (527)
T ss_pred CCcCHHHHHHHH
Confidence 224444444443
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00033 Score=83.87 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=110.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+...+.+.. .+..+ . -...+.++|+.|+||||+|+.+++.+-..-. .-.-.|... ...
T Consensus 14 ~f~divGq~~v~~~L~~------~~~~~-~---l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pCg~C---~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSN------ALDQQ-Y---LHHAYLFTGTRGVGKTTISRILAKCLNCEKG-VSANPCNDC---ENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHH------HHHhC-C---CCeeEEEECCCCCCHHHHHHHHHHHhcCCCC-CCcccCCCC---HHH
Confidence 34567887777777763 01000 0 1235789999999999999999997642210 000011111 011
Q ss_pred HHHHH-----HccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccC
Q 001918 510 LNLWS-----FLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPR 580 (996)
Q Consensus 510 ~~La~-----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~ 580 (996)
..+.. .+.+.... . ...++ +..+.+.+ ..++.-++|+|+|+.+..- ....|.+.+..
T Consensus 80 ~~i~~g~~~d~~eidaas-----~-------~~v~~-iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-a~naLLk~LEe 145 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS-----R-------TKVED-TRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-SFNALLKTLEE 145 (509)
T ss_pred HHHhcCCCceEEEEcccc-----c-------CCHHH-HHHHHHHHhhccccCCcEEEEEEChHhcCHH-HHHHHHHHHhc
Confidence 11100 00000000 0 01111 11222222 1345568889999986321 11344455544
Q ss_pred CCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHHHHHHH
Q 001918 581 FGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAVVGAIL 652 (996)
Q Consensus 581 ~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~~gs~L 652 (996)
....+.+|++|.+.. +. ....+++++++.++....+...+.... .-+.+.+..|++.++|-+- |+..+-..+
T Consensus 146 pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 146 PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 445677777665542 32 236789999999998887776664221 2245567789999999773 444442222
Q ss_pred h--cCCCCHHHHHHHHhc
Q 001918 653 S--ELPINPSRLLDTINR 668 (996)
Q Consensus 653 ~--~~~~s~~e~l~~L~~ 668 (996)
. ...++.++..+.+..
T Consensus 226 a~~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 226 AYGNGKVLIADVKTMLGT 243 (509)
T ss_pred hcCCCCcCHHHHHHHHCC
Confidence 2 223566666655543
No 70
>PRK05642 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.00021 Score=77.28 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=86.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|||..|+|||.|+..+++.+..+-..++|++.. +.+.. ...+
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-----~~~~~------------------------------~~~~ 91 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-----ELLDR------------------------------GPEL 91 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-----HHHhh------------------------------hHHH
Confidence 589999999999999999999877655677888521 11100 0123
Q ss_pred HHHHhcCCCEEEEEcCCCCcc---cccchHHHhhhccC-CCCCeEEEEEecCCC--cC----C-------cceEEccCCC
Q 001918 546 RKELMRNIPFLVIIDNLESEK---DWWDDKLVMDLLPR-FGGETHIIISTRLPR--VM----N-------LEPLKLSYLS 608 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~---~~~~~~~L~~~lp~-~~~gsrIIITTR~~~--~~----~-------~~~~~v~~L~ 608 (996)
.+.+ .+-. +||+||++... +| ...|..++.. ...|..|||||+... +. . ..++++++++
T Consensus 92 ~~~~-~~~d-~LiiDDi~~~~~~~~~--~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 92 LDNL-EQYE-LVCLDDLDVIAGKADW--EEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred HHhh-hhCC-EEEEechhhhcCChHH--HHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC
Confidence 3444 2223 67889997542 11 1335555432 123678999887532 21 1 1578999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
.++-++++..++.... .-..+...-|++.+.|-.-.|
T Consensus 168 ~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 168 DEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 9999999986654211 123455566666666554433
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.86 E-value=0.00022 Score=76.18 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=88.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+.|+|..|.|||.|..++++.+.... ..++++++ .+....+...+.. ....
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-----~~f~~~~~~~~~~---------------------~~~~ 89 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-----EEFIREFADALRD---------------------GEIE 89 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-----HHHHHHHHHHHHT---------------------TSHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-----HHHHHHHHHHHHc---------------------ccch
Confidence 478999999999999999999876543 36788853 2222233222211 1134
Q ss_pred HHHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCCC--cC-----------CcceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLPR--VM-----------NLEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~~--~~-----------~~~~~~v~~L~ 608 (996)
.+++.+ . .-=+|||||++....-. ..+.+..++.. ...|.+||||+.... +. ..-++++++++
T Consensus 90 ~~~~~~-~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 90 EFKDRL-R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHH-C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhh-h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 456666 3 45588999998763210 01233333322 123678999996642 21 12589999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHH
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~ 646 (996)
.++-.+++.+.+.... .-..+.+.-|++.+.+..-.|.
T Consensus 168 ~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 168 DEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHH
Confidence 9999999999886222 2234556666666655444333
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00044 Score=83.65 Aligned_cols=213 Identities=12% Similarity=0.070 Sum_probs=113.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|.+...+.+.. .+..+ . -...+.++|+.|+||||+|+.++..+..... .-+-.|... ...
T Consensus 11 ~f~eivGq~~i~~~L~~------~i~~~-r---~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pCg~C---~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSS------ALDAG-R---INHAYLFSGPRGCGKTSSARILARSLNCAQG-PTATPCGVC---ESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHHhccccC-CCCCccccc---HHH
Confidence 34578888887777763 11111 0 1235789999999999999999987653210 001111111 111
Q ss_pred HHHHHH----ccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCC
Q 001918 510 LNLWSF----LDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF 581 (996)
Q Consensus 510 ~~La~~----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~ 581 (996)
..+... .... ..+.. . ....+.+..+++.+ ...++-++|+|+++.+..- ..+.|.+++...
T Consensus 77 ~~i~~~~~~~~dvi-eidaa-s--------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-A~NALLK~LEEp 145 (584)
T PRK14952 77 VALAPNGPGSIDVV-ELDAA-S--------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-GFNALLKIVEEP 145 (584)
T ss_pred HHhhcccCCCceEE-Eeccc-c--------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-HHHHHHHHHhcC
Confidence 111110 0000 00000 0 00011122233332 1345668899999876321 123455555544
Q ss_pred CCCeEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 001918 582 GGETHIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAILS 653 (996)
Q Consensus 582 ~~gsrIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L~ 653 (996)
...+.+|++|.+ ..+. ....+++..++.++..+.+...+.... .-+.+.+..|++..+|-+ -++..+-..+.
T Consensus 146 p~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 446666665544 3332 247899999999999999988765222 234556788899999976 45555544433
Q ss_pred c---CCCCHHHHHHHHh
Q 001918 654 E---LPINPSRLLDTIN 667 (996)
Q Consensus 654 ~---~~~s~~e~l~~L~ 667 (996)
. ..++.+...+.+.
T Consensus 226 ~~~~~~It~~~v~~llg 242 (584)
T PRK14952 226 GAADTHVTYQRALGLLG 242 (584)
T ss_pred ccCCCCcCHHHHHHHHC
Confidence 2 2356555555543
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00036 Score=83.91 Aligned_cols=198 Identities=15% Similarity=0.062 Sum_probs=104.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|.+...+.+.. ....+ . ....+.++|+.|+||||+|+.++..+...- |............
T Consensus 14 ~F~dIIGQe~iv~~L~~------aI~~~-r---l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVN------AILNN-K---LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCCCCCcccHHH
Confidence 44578888888888763 11011 0 123578999999999999999999864211 2111110000111
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
..+........-.... .. .. .. +.+..+.+.+ ...++-++|+|+++....- ....|..++...++.+
T Consensus 80 r~i~~~~h~DiieIda---as--~i--gV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~t 150 (605)
T PRK05896 80 ESINTNQSVDIVELDA---AS--NN--GV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHV 150 (605)
T ss_pred HHHHcCCCCceEEecc---cc--cc--CH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcE
Confidence 1111110000000000 00 00 11 1122222222 1233446999999876321 1134555554333456
Q ss_pred EEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHH
Q 001918 586 HIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGA 650 (996)
Q Consensus 586 rIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs 650 (996)
.+|++|... .+. ++..+++.+++.++....+...+.... .-..+.+..+++.++|-+ .|+..+-.
T Consensus 151 vfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 151 VFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred EEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 666555433 332 247899999999999999988764222 234566788999999954 56655554
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00034 Score=81.03 Aligned_cols=162 Identities=10% Similarity=-0.010 Sum_probs=88.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.++|++|+|||++|+.++..+-..... +-.+.....-. .+.. -..+.-....++...+ .. +.+..+
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~---~~~~-~~hpD~~~i~~~~~~i-----~i-~~iR~l 105 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACR---TVLA-GTHPDVRVVAPEGLSI-----GV-DEVREL 105 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHH---HHhc-CCCCCEEEeccccccC-----CH-HHHHHH
Confidence 48899999999999999999876433211 11111110000 0000 0000000000000000 11 123334
Q ss_pred HHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHH
Q 001918 546 RKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSL 615 (996)
Q Consensus 546 ~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~L 615 (996)
.+.+. .+++-++|+|+++....- ....|.+.+....+++.+|++|.+.. +. ....+.+++++.++..+.
T Consensus 106 ~~~~~~~p~~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~ 184 (394)
T PRK07940 106 VTIAARRPSTGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEV 184 (394)
T ss_pred HHHHHhCcccCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHH
Confidence 44431 244557888999987421 11335555544344677777776643 32 237899999999999999
Q ss_pred HhhhcCCCCcccHHHHHHHHHHhCCChHH
Q 001918 616 MQGSVKDYPITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 616 f~~~a~~~~~~~~~~a~~iv~~lgglPLA 644 (996)
+....+ ...+.+..++..++|-|..
T Consensus 185 L~~~~~----~~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 185 LVRRDG----VDPETARRAARASQGHIGR 209 (394)
T ss_pred HHHhcC----CCHHHHHHHHHHcCCCHHH
Confidence 975432 1245577899999999863
No 75
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0038 Score=76.52 Aligned_cols=193 Identities=12% Similarity=-0.025 Sum_probs=102.7
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~ 510 (996)
-.+++|-+...+.+.. .+..+ . -...+.++|+.|+||||+|+.++..+.......-+-.+. ......
T Consensus 15 ~~eiiGq~~~~~~L~~------~i~~~-~---i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~---~c~~c~ 81 (585)
T PRK14950 15 FAELVGQEHVVQTLRN------AIAEG-R---VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG---TCEMCR 81 (585)
T ss_pred HHHhcCCHHHHHHHHH------HHHhC-C---CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc---cCHHHH
Confidence 3467887777777652 00000 0 123578999999999999999998764221000000111 111222
Q ss_pred HHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001918 511 NLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 511 ~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
.+........-.... .. .. ..++ +..+.+.+. ..++-++|+|+++.+..- ..+.|.+++......+.
T Consensus 82 ~i~~~~~~d~~~i~~---~~--~~--~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~tv 152 (585)
T PRK14950 82 AIAEGSAVDVIEMDA---AS--HT--SVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHAI 152 (585)
T ss_pred HHhcCCCCeEEEEec---cc--cC--CHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCeE
Confidence 222211111000000 00 00 1111 222333331 245668999999876321 11344445544334566
Q ss_pred EEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001918 587 IIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 587 IIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
+|++|.+. .+. ....+++..++.++....+.+.+.... .-..+.+..|++.++|.+..+
T Consensus 153 ~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 153 FILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDA 218 (585)
T ss_pred EEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 76666443 332 236889999999999999888765322 234566889999999988543
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.78 E-value=0.00053 Score=77.44 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=82.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|.+.....+.. ....+. ...++.|+|++|+|||++|+.+++.+... +..+++.... .
T Consensus 19 ~~~~~~~~~~~~~~l~~------~~~~~~----~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~~~~----~ 81 (316)
T PHA02544 19 TIDECILPAADKETFKS------IVKKGR----IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGSDCR----I 81 (316)
T ss_pred cHHHhcCcHHHHHHHHH------HHhcCC----CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccCccc----H
Confidence 44677888887777763 011110 12467889999999999999998876432 2344332110 0
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEE
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHII 588 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrII 588 (996)
..+. +.+..+..... ...+-+||||+++....-.....|..++.....++++|
T Consensus 82 ~~i~--------------------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~I 135 (316)
T PHA02544 82 DFVR--------------------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFI 135 (316)
T ss_pred HHHH--------------------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEE
Confidence 0000 00111111110 23456889999987621101134555555444578899
Q ss_pred EEecCCCc------CCcceEEccCCCHHHHHHHHhhh
Q 001918 589 ISTRLPRV------MNLEPLKLSYLSGVEAMSLMQGS 619 (996)
Q Consensus 589 ITTR~~~~------~~~~~~~v~~L~~~EA~~Lf~~~ 619 (996)
+||..... .....+.++.++.++..+++...
T Consensus 136 lt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 136 ITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred EEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 98875432 12256777778888887776553
No 77
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0011 Score=80.97 Aligned_cols=193 Identities=14% Similarity=0.098 Sum_probs=102.2
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEe-----CcCc
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVG-----GESR 503 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~-----~~~~ 503 (996)
-.+++|-+.....+++ ...... -...+.++|+.|+||||+|+.+++.+-.. ++.--|.. |...
T Consensus 15 f~eivGQe~i~~~L~~-------~i~~~r---i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 15 FADITAQEHITHTIQN-------SLRMDR---VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHhcCcHHHHHHHHH-------HHHcCC---CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 3467787777777763 100101 11247899999999999999999976432 11111221 1111
Q ss_pred cHHHHHHHHHH--HccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhh
Q 001918 504 YIRQNYLNLWS--FLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDL 577 (996)
Q Consensus 504 ~~~~~l~~La~--~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~ 577 (996)
.....+.. .+....- ++. . . ...++ +..+.+.+ ..+.+-++|+|+++....- ..+.|.++
T Consensus 85 ---~sC~~~~~g~~~n~~~~-d~~---s---~--~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-a~naLLK~ 150 (620)
T PRK14954 85 ---ESCRDFDAGTSLNISEF-DAA---S---N--NSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-AFNAFLKT 150 (620)
T ss_pred ---HHHHHHhccCCCCeEEe-ccc---c---c--CCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-HHHHHHHH
Confidence 01111111 0110000 000 0 0 01112 22222333 1345567899999886421 12456666
Q ss_pred ccCCCCCeEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHH
Q 001918 578 LPRFGGETHIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAV 647 (996)
Q Consensus 578 lp~~~~gsrIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~ 647 (996)
+....+.+.+|++|.+ ..+. ....+++.+++.++....+...+.... .-+.+.+..|++.++|-. .++..
T Consensus 151 LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 151 LEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 6544345665555533 3332 237899999999999888887664211 234566888999999944 44443
No 78
>PRK08116 hypothetical protein; Validated
Probab=97.77 E-value=9.2e-05 Score=81.55 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=62.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|.+|+|||.||.++++.+..+...++|++ ....+..+........ ......+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----~~~ll~~i~~~~~~~~------------------~~~~~~~ 172 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----FPQLLNRIKSTYKSSG------------------KEDENEI 172 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHHhccc------------------cccHHHH
Confidence 3889999999999999999999876666678884 3333433333321110 0112234
Q ss_pred HHHHhcCCCEEEEEcCCC--CcccccchHHHhhhccC-CCCCeEEEEEecC
Q 001918 546 RKELMRNIPFLVIIDNLE--SEKDWWDDKLVMDLLPR-FGGETHIIISTRL 593 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd--~~~~~~~~~~L~~~lp~-~~~gsrIIITTR~ 593 (996)
.+.+ .+.. ||||||+. ...+| ....|..++.. ...+..+||||..
T Consensus 173 ~~~l-~~~d-lLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 173 IRSL-VNAD-LLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHh-cCCC-EEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4555 3333 89999994 33443 33455555542 2235779999864
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.75 E-value=8e-05 Score=83.42 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=74.6
Q ss_pred ccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCc--------C
Q 001918 159 RSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFR--------N 230 (996)
Q Consensus 159 ~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~--------S 230 (996)
.+.|||||||-.- -+...|-|.--|..+|..+|||-+.++.|.--..++ +-|+..|-+|.|+|+|.-. -
T Consensus 611 kq~DVFISYRRst--GnQLASLiKV~LQL~GyrVFIDVdKL~AGKFdssLl-kni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 611 KQIDVFISYRRST--GNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLL-KNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred CCcceEEEeeccc--cHHHHHHHHHHHHhcCceEEEehhhhhcccccHHHH-HHHHhhheeEEEeCcchHHHHhccccHH
Confidence 5689999999874 488999999999999999999988888888555555 6788999999999999643 3
Q ss_pred cccHHHHHhhhcC-CceEeeeec
Q 001918 231 PYSIEELRYFSGK-KNLVPIFFD 252 (996)
Q Consensus 231 ~wCL~EL~~i~~~-~~v~PvFy~ 252 (996)
.|--.||+.-.+| +++||||=.
T Consensus 688 DWVHKEl~~Afe~~KNIiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQKNIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhcCCeeeeecc
Confidence 4666788777775 589999954
No 80
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00021 Score=83.45 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC-CCcCC-----cceEEccCCCHHHHHHHHhhhcCCCC-
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL-PRVMN-----LEPLKLSYLSGVEAMSLMQGSVKDYP- 624 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~-~~~~~-----~~~~~v~~L~~~EA~~Lf~~~a~~~~- 624 (996)
..+-++|+|+++....- ..+.|.+++....+.+.+|++|.+ ..+.. ...+++++++.++..+.+...+....
T Consensus 126 ~~~kvvIIdea~~l~~~-~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIA-AFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred CCeEEEEEeChhhCCHH-HHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999976421 114566666544446666665533 33321 26899999999999988888764222
Q ss_pred cccHHHHHHHHHHhCCChH-HHHH
Q 001918 625 ITEVDALRVIEEKVGRLTM-GLAV 647 (996)
Q Consensus 625 ~~~~~~a~~iv~~lgglPL-AL~~ 647 (996)
.-..+.+..|++.++|.+- ++..
T Consensus 205 ~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 205 SVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2356678899999999663 4443
No 81
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00049 Score=83.68 Aligned_cols=193 Identities=14% Similarity=0.037 Sum_probs=104.8
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCC----EEEEEeCcCccH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYK----MVLWVGGESRYI 505 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~----~v~wi~~~~~~~ 505 (996)
.-.+++|.+...+.+.. .+..+ . -..-+.++|+.|+||||+|+.+++.+..... +..+-.+...
T Consensus 22 ~f~dliGq~~~v~~L~~------~~~~g-r---i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c-- 89 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTN------AFETG-R---IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG-- 89 (598)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC-C---CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc--
Confidence 44578898888888763 01011 0 1124789999999999999999997653321 1111111111
Q ss_pred HHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCC
Q 001918 506 RQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF 581 (996)
Q Consensus 506 ~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~ 581 (996)
.....+..--..+.-........ ..++ +..+.+.+ ...++-++|+|+++....- ..+.|.+++...
T Consensus 90 -~~C~~i~~g~h~Dv~e~~a~s~~-------gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~-a~naLLKtLEeP 159 (598)
T PRK09111 90 -EHCQAIMEGRHVDVLEMDAASHT-------GVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTA-AFNALLKTLEEP 159 (598)
T ss_pred -HHHHHHhcCCCCceEEecccccC-------CHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHH-HHHHHHHHHHhC
Confidence 11111111110000000000000 1111 22222222 1245567899999876421 124455555443
Q ss_pred CCCeEEEEEe-cCCCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHH
Q 001918 582 GGETHIIIST-RLPRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 582 ~~gsrIIITT-R~~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLA 644 (996)
.+++.+|++| ....+. ....+++..++.++....+...+.... .-..+.+..|++.++|-+.-
T Consensus 160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRD 229 (598)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 3466666655 333331 247899999999999999988775322 23456788899999998854
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00053 Score=81.04 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=99.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
-+.|+|..|.|||+|+.++++.+... -..+++++ ....+..+...++.. .....
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----~~~f~~~~~~~l~~~-------------------~~~~~ 198 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----GDEFARKAVDILQKT-------------------HKEIE 198 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----HHHHHHHHHHHHHHh-------------------hhHHH
Confidence 37899999999999999999976543 24667884 333333333333210 01233
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccc-cchHHHhhhccC-CCCCeEEEEEecCCC--cC-----------CcceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDW-WDDKLVMDLLPR-FGGETHIIISTRLPR--VM-----------NLEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~-~~~~~L~~~lp~-~~~gsrIIITTR~~~--~~-----------~~~~~~v~~L~ 608 (996)
.+++.+ + ..-+|||||++....- ...+.+..++.. ...|..||||+.... +. ..-++++++++
T Consensus 199 ~~~~~~-~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 199 QFKNEI-C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred HHHHHh-c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcC
Confidence 455555 3 3448889999865310 011334444432 123557888876532 10 12478899999
Q ss_pred HHHHHHHHhhhcCCCC---cccHHHHHHHHHHhCCChHHHHHHHHH
Q 001918 609 GVEAMSLMQGSVKDYP---ITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~---~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
.++-.+++.+.+.... .-..+.+.-|++.++|.|-.|.-+-..
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999999999885311 234677888999999988776655433
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00033 Score=88.03 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=96.8
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC------C-EEEEEeCc
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY------K-MVLWVGGE 501 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~-~v~wi~~~ 501 (996)
++-..++||+.++.++... +.+... .=+.++|++|+|||+||..+++++...- . .++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~------L~~~~~-----~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~-- 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQV------LCRRKK-----NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD-- 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHH------HhcCCC-----CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec--
Confidence 3445799999999987631 111111 1267999999999999999999875431 1 233332
Q ss_pred CccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc-------cc-hHH
Q 001918 502 SRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW-------WD-DKL 573 (996)
Q Consensus 502 ~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~-------~~-~~~ 573 (996)
.. .+.. +.. +....++.+..+.+.+...++++|++|+++....- .+ .+.
T Consensus 246 ---~~----~l~a--~~~--------------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~ 302 (731)
T TIGR02639 246 ---MG----SLLA--GTK--------------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL 302 (731)
T ss_pred ---HH----HHhh--hcc--------------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH
Confidence 11 1100 000 00123344555555554457899999999865210 00 122
Q ss_pred HhhhccCCCCCeEEEEEecCCC----c------C-CcceEEccCCCHHHHHHHHhhhcCC----CC-cccHHHHHHHHHH
Q 001918 574 VMDLLPRFGGETHIIISTRLPR----V------M-NLEPLKLSYLSGVEAMSLMQGSVKD----YP-ITEVDALRVIEEK 637 (996)
Q Consensus 574 L~~~lp~~~~gsrIIITTR~~~----~------~-~~~~~~v~~L~~~EA~~Lf~~~a~~----~~-~~~~~~a~~iv~~ 637 (996)
|...+.. +.-++|-+|.... + . ....++|++++.++..+++...... .. .-..+....+++.
T Consensus 303 L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 303 LKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVEL 380 (731)
T ss_pred HHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHh
Confidence 3333332 2345555555422 1 1 2378999999999999999965531 11 1234445556655
Q ss_pred hC
Q 001918 638 VG 639 (996)
Q Consensus 638 lg 639 (996)
++
T Consensus 381 s~ 382 (731)
T TIGR02639 381 SA 382 (731)
T ss_pred hh
Confidence 53
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00092 Score=78.86 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|++|+|||+|+.++++.+......+++++. ......+...+.. .....+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-----~~f~~~~~~~l~~---------------------~~~~~f 196 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-----ELFTEHLVSAIRS---------------------GEMQRF 196 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-----HHHHHHHHHHHhc---------------------chHHHH
Confidence 47899999999999999999988765556778842 2222222222210 011233
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-cchHHHhhhccC-CCCCeEEEEEecCCC-----c-----CC---cceEEccCCCHH
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW-WDDKLVMDLLPR-FGGETHIIISTRLPR-----V-----MN---LEPLKLSYLSGV 610 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-~~~~~L~~~lp~-~~~gsrIIITTR~~~-----~-----~~---~~~~~v~~L~~~ 610 (996)
+..+ ...-+||+||++..... +..+.+..++.. ...|..||+||.... + .. ..++++++++.+
T Consensus 197 ~~~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 197 RQFY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred HHHc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 4444 33458888999875321 112333333321 113567888886531 1 11 157899999999
Q ss_pred HHHHHHhhhcCCCC-cccHHHHHHHHHHhCCC
Q 001918 611 EAMSLMQGSVKDYP-ITEVDALRVIEEKVGRL 641 (996)
Q Consensus 611 EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lggl 641 (996)
+-.+++.+.+.... .-..+.+.-|++.+.+.
T Consensus 275 ~r~~iL~~k~~~~~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 275 GLRSFLERKAEALSIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 99999998875322 22345555566655543
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0014 Score=75.71 Aligned_cols=170 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC--------CC-EEEEEeC
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR--------YK-MVLWVGG 500 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--------F~-~v~wi~~ 500 (996)
.-.+++|.+...+.+.. .+..+. -.+.+.++|++|+|||++|..+++.+... |. .++-++.
T Consensus 15 ~~~~iig~~~~~~~l~~------~i~~~~----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 15 TFDDVVGQSHITNTLLN------AIENNH----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred cHHhcCCcHHHHHHHHH------HHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 34467787777776663 111110 12368899999999999999998876432 11 0111110
Q ss_pred cCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhh
Q 001918 501 ESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMD 576 (996)
Q Consensus 501 ~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~ 576 (996)
... ...++ +..+.+.+ ..+++-++|+|+++....- ....+..
T Consensus 85 ~~~--------------------------------~~~~~-i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-~~~~ll~ 130 (367)
T PRK14970 85 ASN--------------------------------NSVDD-IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-AFNAFLK 130 (367)
T ss_pred ccC--------------------------------CCHHH-HHHHHHHHhhccccCCcEEEEEeChhhcCHH-HHHHHHH
Confidence 000 00111 11111111 0245568999999865320 0123444
Q ss_pred hccCCCCCeEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 577 LLPRFGGETHIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 577 ~lp~~~~gsrIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
++......+.+|++|.. ..+. ....+++++++.++....+...+.... .-..+.+..|++.++|-+-
T Consensus 131 ~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 131 TLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALR 204 (367)
T ss_pred HHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHH
Confidence 44333334566665543 3332 236899999999999988888665322 2245678888998888554
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.66 E-value=0.00012 Score=83.10 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCccHHHHHHHHHHHcc-CccCcccCCcccccchhhhcHHH
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESRYIRQNYLNLWSFLD-VDVGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~~~~~~l~~La~~L~-~~~~~~~~~~~~~~~~~~~~~~~ 540 (996)
|+ .++|+|++|+||||||+.+++.+.. +|+.++|+-...+.. ....++.+.+. ....... +......+ .-...
T Consensus 169 GQ-R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~-~EVtdiqrsIlg~vv~st~--d~~~~~~~-~~a~~ 243 (416)
T PRK09376 169 GQ-RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP-EEVTDMQRSVKGEVVASTF--DEPAERHV-QVAEM 243 (416)
T ss_pred Cc-eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch-hHHHHHHHHhcCcEEEECC--CCCHHHHH-HHHHH
Confidence 44 4899999999999999999998765 699999987655421 23344445432 1110000 00000000 01122
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 541 AICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+...+.+...++++||++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 3333333334789999999999864
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00051 Score=81.23 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=102.3
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~ 510 (996)
-.+++|.+.....+.. .+..+. -...+.++|+.|+||||+|+.++..+...-..- +...........
T Consensus 16 ~~diiGq~~~v~~L~~------~i~~~~----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~---~~~~c~~c~~C~ 82 (451)
T PRK06305 16 FSEILGQDAVVAVLKN------ALRFNR----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE---DQEPCNQCASCK 82 (451)
T ss_pred HHHhcCcHHHHHHHHH------HHHcCC----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc---CCCCCcccHHHH
Confidence 3467787777777663 111110 123578999999999999999999764321000 000000000000
Q ss_pred HHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 511 NLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 511 ~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
.+...-.... ...+.. .. .. +.+..+.+.+ ....+-++|+|+++....- ..+.|.+++....+.+
T Consensus 83 ~i~~~~~~d~~~i~g~~-~~-------gi-d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 83 EISSGTSLDVLEIDGAS-HR-------GI-EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHV 152 (451)
T ss_pred HHhcCCCCceEEeeccc-cC-------CH-HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCc
Confidence 1110000000 000000 00 01 1122222222 1356778999999876320 1134555554433466
Q ss_pred EEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHH
Q 001918 586 HIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVG 649 (996)
Q Consensus 586 rIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~g 649 (996)
.+|++|.+ ..+. ....+++++++.++..+.+...+.... .-+.+.+..|+++++|-+ .|+..+-
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67666643 2332 237899999999999998888764222 235667889999999865 4544443
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.64 E-value=0.0011 Score=77.73 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=92.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+.|+|.+|+|||+|+.++++.+..+. ..++|+++. ..+..+...+... ...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~-----~~~~~~~~~~~~~---------------------~~~ 191 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE-----KFTNDFVNALRNN---------------------KME 191 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH-----HHHHHHHHHHHcC---------------------CHH
Confidence 488999999999999999999887664 357788532 2222222222110 122
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccc-cchHHHhhhccC-CCCCeEEEEEecCCC--cC--------C---cceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDW-WDDKLVMDLLPR-FGGETHIIISTRLPR--VM--------N---LEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~-~~~~~L~~~lp~-~~~gsrIIITTR~~~--~~--------~---~~~~~v~~L~ 608 (996)
.+++.+ .. .-+|||||++....- ...+.+..++.. ...+..|||||.... +. . ..++++++++
T Consensus 192 ~~~~~~-~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd 269 (405)
T TIGR00362 192 EFKEKY-RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPD 269 (405)
T ss_pred HHHHHH-Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCC
Confidence 334445 22 348889999865321 001223333321 113567888876421 11 1 1468999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHH
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~ 646 (996)
.++-.+++...+.... .-..+.+..|++.+.+..-.|.
T Consensus 270 ~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 270 LETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 9999999999886322 2345667788888887665443
No 89
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.0013 Score=77.81 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=90.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.|+|.+|+|||+|+.++++.+...+ ..++|+++ ...+..+...+... . ...
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-----~~f~~~~~~~~~~~-----------------~----~~~ 186 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-----EKFLNDLVDSMKEG-----------------K----LNE 186 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-----HHHHHHHHHHHhcc-----------------c----HHH
Confidence 89999999999999999999887654 26788853 22233332222100 1 122
Q ss_pred HHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCC-C-c--------CC---cceEEccCCCH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLP-R-V--------MN---LEPLKLSYLSG 609 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~-~-~--------~~---~~~~~v~~L~~ 609 (996)
+++.+ ....-+|||||++....-. ....+...+.. ...|..|||||... . + .. ..++++++++.
T Consensus 187 f~~~~-~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 187 FREKY-RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHH-HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 33444 3345688999998642110 01223333321 11245788888532 1 1 01 14789999999
Q ss_pred HHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001918 610 VEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 610 ~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
++-.+++.+.+.... .-..+.+..|++.+.|.--.|
T Consensus 266 e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 266 ETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHH
Confidence 999999998875221 223556777777777654433
No 90
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00089 Score=75.85 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=89.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCc-cCcccCCcccccchhhhcHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVD-VGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
-+.++|+.|+|||++|+.++..+--+-... --.+... .+-..+.. -..+ .....+.+... . ...+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-~~~Cg~C---~sC~~~~~-g~HPD~~~i~~~~~~~--~---i~id~iR~ 93 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQG-GGACGSC---KGCQLLRA-GSHPDNFVLEPEEADK--T---IKVDQVRE 93 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCC---HHHHHHhc-CCCCCEEEEeccCCCC--C---CCHHHHHH
Confidence 478999999999999999999764321100 0011111 01111110 0000 00000000000 0 01123333
Q ss_pred HHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHH
Q 001918 545 VRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~ 614 (996)
+.+.+. .+++-++|+|+++....- ....|.+.+...++++.+|+||.+.. +. ....+.+.+++.+++.+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~-aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRN-AANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHH-HHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 444441 233444567999986431 22445555544335788888887764 32 24789999999999999
Q ss_pred HHhhhcCCCCcccHHHHHHHHHHhCCChHH
Q 001918 615 LMQGSVKDYPITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 615 Lf~~~a~~~~~~~~~~a~~iv~~lgglPLA 644 (996)
.+...... ...+.+..++..++|.|+.
T Consensus 173 ~L~~~~~~---~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 173 WLQQALPE---SDERERIELLTLAGGSPLR 199 (328)
T ss_pred HHHHhccc---CChHHHHHHHHHcCCCHHH
Confidence 99876422 2233456788999999964
No 91
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.62 E-value=0.00087 Score=79.64 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
-+.|+|.+|+|||+|+..+++.+..++ ..++|+++. .....+...+.. ....
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~-----~~~~~~~~~~~~---------------------~~~~ 203 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE-----KFTNDFVNALRN---------------------NTME 203 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH-----HHHHHHHHHHHc---------------------CcHH
Confidence 489999999999999999999988765 357788532 222222222210 0122
Q ss_pred HHHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCCC--cC--------C---cceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLPR--VM--------N---LEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~~--~~--------~---~~~~~v~~L~ 608 (996)
.+++.+ + ..-+|||||++....-- ..+.+...+.. ...|..|||||.... +. . ..++++++++
T Consensus 204 ~~~~~~-~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 204 EFKEKY-R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred HHHHHH-h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCC
Confidence 344555 3 34488999998642100 01223332221 113456888886542 21 1 1479999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
.++-.+++...+...+ .-..+.+..|++.+.|-.-.|
T Consensus 282 ~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 282 LETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 9999999999886322 234566778888877765543
No 92
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.002 Score=78.98 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=108.7
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLN 511 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~ 511 (996)
.+++|-+...+.+... +..+ .-...+.++|+.|+||||+|+.++..+.......-.-.|... .+...
T Consensus 17 ~~viGq~~~~~~L~~~------i~~~----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C---~sC~~ 83 (614)
T PRK14971 17 ESVVGQEALTTTLKNA------IATN----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC---ESCVA 83 (614)
T ss_pred HHhcCcHHHHHHHHHH------HHcC----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc---hHHHH
Confidence 4677877776666630 0000 012358899999999999999999876422110000001100 01111
Q ss_pred HHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001918 512 LWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 512 La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
+...-............ ...++ +..+.+.+ ..+++=++|+|+++....- ....|.+++.....++.+
T Consensus 84 ~~~~~~~n~~~ld~~~~-------~~vd~-Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tif 154 (614)
T PRK14971 84 FNEQRSYNIHELDAASN-------NSVDD-IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred HhcCCCCceEEeccccc-------CCHHH-HHHHHHHHhhCcccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEE
Confidence 11100000000000000 01112 22222222 1245558899999986431 124566666544445666
Q ss_pred EEEe-cCCCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHH---HHHHhcCC
Q 001918 588 IIST-RLPRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVV---GAILSELP 656 (996)
Q Consensus 588 IITT-R~~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~---gs~L~~~~ 656 (996)
|++| ....+. ...++++.+++.++....+...+.... .-+.+.+..|++.++|-. .|+..+ ..|. +.+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~-~~~ 233 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFT-GGN 233 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCC
Confidence 6555 434442 247899999999999999988765222 234556888999999855 344433 2332 223
Q ss_pred CCHHHHHHHH
Q 001918 657 INPSRLLDTI 666 (996)
Q Consensus 657 ~s~~e~l~~L 666 (996)
++.+...+.+
T Consensus 234 It~~~V~~~l 243 (614)
T PRK14971 234 ITYKSVIENL 243 (614)
T ss_pred ccHHHHHHHh
Confidence 5555544444
No 93
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.58 E-value=0.00014 Score=78.95 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=56.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCc---cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESR---YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~---~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|.|++|+|||||++.+++.+.. +|+.++|+-.... ++.+.+..+...+-......+. . ... .-....
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~--~---~~~-~~~~~~ 91 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPP--E---RHV-QVAEMV 91 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCH--H---HHH-HHHHHH
Confidence 5999999999999999999997654 6888889863332 4555554442211111111110 0 000 012233
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
......+...+++++|++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 344444434689999999999865
No 94
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.58 E-value=0.00036 Score=82.88 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC-----CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRY-----KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F-----~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
|.|+|++|+|||++|+.+++.+...+ ...+|++.....+ +....+ .....
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL----------l~kyvG---------------ete~~ 273 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL----------LNKYVG---------------ETERQ 273 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh----------cccccc---------------hHHHH
Confidence 89999999999999999999876552 2455654322110 000000 11122
Q ss_pred HHHHHHH----HhcCCCEEEEEcCCCCccccc--------chH---HHhhhccCC--CCCeEEEEEecCCCc-----C--
Q 001918 542 ICRVRKE----LMRNIPFLVIIDNLESEKDWW--------DDK---LVMDLLPRF--GGETHIIISTRLPRV-----M-- 597 (996)
Q Consensus 542 ~~~l~~~----L~~~~r~LLVLDdvd~~~~~~--------~~~---~L~~~lp~~--~~gsrIIITTR~~~~-----~-- 597 (996)
+..+.+. ...+++++|+||++|..-.-. +.. +|...+... ..+..||.||..... .
T Consensus 274 ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRp 353 (512)
T TIGR03689 274 IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRP 353 (512)
T ss_pred HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCc
Confidence 2223222 224579999999999642100 001 222223221 124555666655433 1
Q ss_pred -Cc-ceEEccCCCHHHHHHHHhhhcC
Q 001918 598 -NL-EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 598 -~~-~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
.. ..++++.++.++..++|..+..
T Consensus 354 GRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 354 GRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccceEEEeCCCCHHHHHHHHHHHhh
Confidence 12 4689999999999999999875
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.0005 Score=87.28 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=100.3
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCC-------EEEEEeC
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYK-------MVLWVGG 500 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~-------~v~wi~~ 500 (996)
|++-..++||+.+++++.. .+.+..+ .-+.|+|++|+|||+||..++.++....- .++.++.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~------~l~r~~~-----~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMID------ILLRRRQ-----NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred CCCCCcccCCHHHHHHHHH------HHhcCCc-----CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 3455689999999998762 1111111 12679999999999999999998764321 1222321
Q ss_pred cCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCccc------ccc-hH
Q 001918 501 ESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKD------WWD-DK 572 (996)
Q Consensus 501 ~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~------~~~-~~ 572 (996)
. ... .+. ......++.+..+.+.+. ..++++|++|+++.... -.+ ..
T Consensus 252 ~------------~l~---ag~----------~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n 306 (852)
T TIGR03345 252 G------------LLQ---AGA----------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN 306 (852)
T ss_pred h------------hhh---ccc----------ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH
Confidence 1 000 000 001123334444444442 35789999999987631 001 01
Q ss_pred HHhhhccCCCCCeEEEEEecCCC----c-------CCcceEEccCCCHHHHHHHHhhhcCC----CC-cccHHHHHHHHH
Q 001918 573 LVMDLLPRFGGETHIIISTRLPR----V-------MNLEPLKLSYLSGVEAMSLMQGSVKD----YP-ITEVDALRVIEE 636 (996)
Q Consensus 573 ~L~~~lp~~~~gsrIIITTR~~~----~-------~~~~~~~v~~L~~~EA~~Lf~~~a~~----~~-~~~~~~a~~iv~ 636 (996)
.|...+.. +.-++|-||.... + .....+.|++++.++..++|...... .. .-..+....+++
T Consensus 307 ~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ 384 (852)
T TIGR03345 307 LLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVE 384 (852)
T ss_pred HhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHH
Confidence 23333332 2456666666522 1 12378999999999999997655431 11 123556677777
Q ss_pred HhCCCh
Q 001918 637 KVGRLT 642 (996)
Q Consensus 637 ~lgglP 642 (996)
.+.+..
T Consensus 385 ls~ryi 390 (852)
T TIGR03345 385 LSHRYI 390 (852)
T ss_pred Hccccc
Confidence 776543
No 96
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.57 E-value=0.00029 Score=77.47 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.-+.++|++|+||||+|+.++..+...- ...-++.+. ... + ++...+ +..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~---~~~----l---~~~~~g------------------~~~ 94 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE---RAD----L---VGEYIG------------------HTA 94 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec---HHH----h---hhhhcc------------------chH
Confidence 3588999999999999999998764321 111122111 000 1 111000 011
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCccc----ccchHHHhhhcc---CCCCCeEEEEEecCCCc-----------CCc-ceEE
Q 001918 543 CRVRKELMRNIPFLVIIDNLESEKD----WWDDKLVMDLLP---RFGGETHIIISTRLPRV-----------MNL-EPLK 603 (996)
Q Consensus 543 ~~l~~~L~~~~r~LLVLDdvd~~~~----~~~~~~L~~~lp---~~~~gsrIIITTR~~~~-----------~~~-~~~~ 603 (996)
..+++.+.....-+|+||+++.+.. ....+.+..++. .......+|+++..... ... ..++
T Consensus 95 ~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~ 174 (261)
T TIGR02881 95 QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISID 174 (261)
T ss_pred HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEE
Confidence 2233333222335889999986421 001234444443 22223455555543322 112 4588
Q ss_pred ccCCCHHHHHHHHhhhcC
Q 001918 604 LSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~ 621 (996)
++.++.+|-.+++.+.+.
T Consensus 175 f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVK 192 (261)
T ss_pred ECCCCHHHHHHHHHHHHH
Confidence 899999998888887764
No 97
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00064 Score=65.69 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=24.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
|.|+|++|+|||++|+.+++.+.. .++.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~---~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF---PFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS---EEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhccc---ccccccc
Confidence 579999999999999999998742 3455643
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=0.00054 Score=65.95 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=52.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|+|++|+||||+++.++..+......+++++...................... . .........+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~ 70 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKA--S-----------GSGELRLRLA 70 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCC--C-----------CCHHHHHHHH
Confidence 68999999999999999999987766556778866543111111000000100000 0 1222334455
Q ss_pred HHHHhcCCCEEEEEcCCCCccc
Q 001918 546 RKELMRNIPFLVIIDNLESEKD 567 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~ 567 (996)
.......+..+|++|+++....
T Consensus 71 ~~~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 71 LALARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHHHhcCCCEEEEECCcccCC
Confidence 5555334459999999998744
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0012 Score=81.02 Aligned_cols=194 Identities=15% Similarity=0.099 Sum_probs=101.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-..++|-+...+.++. .+..+ .....+.++|+.|+||||+|+.++..+-..-....+-.|. .+.
T Consensus 16 ~f~dIiGQe~~v~~L~~------aI~~~----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~-----~C~ 80 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKN------IIKSN----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ-----ECI 80 (725)
T ss_pred CHHHhcCcHHHHHHHHH------HHHcC----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh-----HHH
Confidence 34467777777666663 11111 0123578999999999999999998754221100010110 000
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
........... .... . . ...+.+..+.+.+. .+++-++|+|+++.+..- ....|.+.+-..+..+
T Consensus 81 ~~~~~~~Dvie-idaa---s---n---~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~t 149 (725)
T PRK07133 81 ENVNNSLDIIE-MDAA---S---N---NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHV 149 (725)
T ss_pred HhhcCCCcEEE-Eecc---c---c---CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCce
Confidence 00000000000 0000 0 0 00122333333331 356668899999876321 1134444443333355
Q ss_pred EEEEEe-cCCCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHH
Q 001918 586 HIIIST-RLPRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVG 649 (996)
Q Consensus 586 rIIITT-R~~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~g 649 (996)
.+|++| ....+. ++..+++.+++.++..+.+...+.... .-+.+.+..|++.++|-+ .|+..+-
T Consensus 150 ifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 150 IFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555554 333442 247899999999999999887654221 234556788999998855 5555544
No 100
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00054 Score=75.86 Aligned_cols=168 Identities=15% Similarity=0.310 Sum_probs=99.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|+||.|||-||++++++.... ||......+ +++.+| ++...|+
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgSEl------VqKYiG----------------------EGaRlVR 234 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGSEL------VQKYIG----------------------EGARLVR 234 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCce-----EEEeccHHH------HHHHhc----------------------cchHHHH
Confidence 8999999999999999999986544 443221111 122232 2334444
Q ss_pred HHH---hcCCCEEEEEcCCCCcccc-------cch---HHHhhhc---cCCC--CCeEEEEEecCCCcC--------Cc-
Q 001918 547 KEL---MRNIPFLVIIDNLESEKDW-------WDD---KLVMDLL---PRFG--GETHIIISTRLPRVM--------NL- 599 (996)
Q Consensus 547 ~~L---~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~l---p~~~--~gsrIIITTR~~~~~--------~~- 599 (996)
+.+ +...+..|.+|.+|....- -|. .-+.++| ..|. ...+||..|....+. ..
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~D 314 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFD 314 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccc
Confidence 444 3578899999999874210 011 1222232 2222 368899988776652 12
Q ss_pred ceEEccCCCHHHHHHHHhhhcCCCCc-ccHHHHHHHHHHhCCChHH----HHHHHHHH--hcCC--CCHHHHHHHHhc
Q 001918 600 EPLKLSYLSGVEAMSLMQGSVKDYPI-TEVDALRVIEEKVGRLTMG----LAVVGAIL--SELP--INPSRLLDTINR 668 (996)
Q Consensus 600 ~~~~v~~L~~~EA~~Lf~~~a~~~~~-~~~~~a~~iv~~lgglPLA----L~~~gs~L--~~~~--~s~~e~l~~L~~ 668 (996)
+.++++..+.+--.++|.-|+..-.. ++.+ .+.|++.+.|.-=| +..=|+++ ++.. ++.+++++...+
T Consensus 315 RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 315 RKIEFPLPDEEGRAEILKIHTRKMNLADDVD-LELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred ceeecCCCCHHHHHHHHHHHhhhccCccCcC-HHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 78999988888888999988863221 1111 44677777776533 33333333 3322 466677666655
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0025 Score=76.91 Aligned_cols=149 Identities=14% Similarity=0.177 Sum_probs=89.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+.|+|..|.|||.|+.++++.+...+ ..++|+++ .+.+..+...+.. ....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita-----eef~~el~~al~~---------------------~~~~ 369 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS-----EEFTNEFINSIRD---------------------GKGD 369 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-----HHHHHHHHHHHHh---------------------ccHH
Confidence 389999999999999999999876543 36778842 2222222221110 0122
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccc-cchHHHhhhccC-CCCCeEEEEEecCC--Cc---C-----C---cceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDW-WDDKLVMDLLPR-FGGETHIIISTRLP--RV---M-----N---LEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~-~~~~~L~~~lp~-~~~gsrIIITTR~~--~~---~-----~---~~~~~v~~L~ 608 (996)
.+++++ .+ .=||||||++....- ...+.|..++.. ...+..|||||... .+ . . .-+++|+.++
T Consensus 370 ~f~~~y-~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD 447 (617)
T PRK14086 370 SFRRRY-RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPE 447 (617)
T ss_pred HHHHHh-hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCC
Confidence 344555 32 357888999875321 001234444432 12356799988863 12 1 1 2589999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
.+.-.++|.+++.... .-..+++.-|++.+.+..
T Consensus 448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 448 LETRIAILRKKAVQEQLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCH
Confidence 9999999999886322 223555666666665543
No 102
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0018 Score=77.48 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP- 624 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~- 624 (996)
+++-++|+|+++....- ....|...+....+.+++|++|.+.. +. ....+++.+++.++..+.+...+....
T Consensus 116 ~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45568899999886321 11344445543345677777776642 21 237899999999999999887765221
Q ss_pred cccHHHHHHHHHHhCCChH
Q 001918 625 ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 625 ~~~~~~a~~iv~~lgglPL 643 (996)
.-..+.+..|++.++|-+-
T Consensus 195 ~i~~~Al~~Ia~~s~GdlR 213 (535)
T PRK08451 195 SYEPEALEILARSGNGSLR 213 (535)
T ss_pred CCCHHHHHHHHHHcCCcHH
Confidence 2345678899999999883
No 103
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0018 Score=77.14 Aligned_cols=187 Identities=15% Similarity=0.060 Sum_probs=97.4
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLN 511 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~ 511 (996)
..++|-+.....+.. .+..+ . -...+.++|+.|+||||+|+.++..+...-. .-.-++.. ..+...
T Consensus 16 ~diiGq~~i~~~L~~------~i~~~-~---i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~-~~~~pc~~---c~nc~~ 81 (486)
T PRK14953 16 KEVIGQEIVVRILKN------AVKLQ-R---VSHAYIFAGPRGTGKTTIARILAKVLNCLNP-QEGEPCGK---CENCVE 81 (486)
T ss_pred HHccChHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHHhcCcCC-CCCCCCCc---cHHHHH
Confidence 456677776666653 11000 0 1235788999999999999999987642100 00000000 011111
Q ss_pred HHH--HccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 512 LWS--FLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 512 La~--~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
+.. ...+. ..+... ....+.+..+.+.+ ..+++-++|+|+++....- ..+.|..++....+.+
T Consensus 82 i~~g~~~d~~-eidaas---------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~ 150 (486)
T PRK14953 82 IDKGSFPDLI-EIDAAS---------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRT 150 (486)
T ss_pred HhcCCCCcEE-EEeCcc---------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCe
Confidence 111 00000 000000 00011122333333 1355669999999876321 1134555554433455
Q ss_pred EEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 586 HIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 586 rIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
.+|++|.+ ..+. ....+++.+++.++-...+...+.... .-+.+.+..|++.++|.+-
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr 215 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMR 215 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 56555533 2231 236899999999999998888765222 2345667889999999664
No 104
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.49 E-value=0.00053 Score=72.31 Aligned_cols=166 Identities=19% Similarity=0.113 Sum_probs=85.1
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccc-cccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHH
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTK-ILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIR 506 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~-~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~ 506 (996)
|..-.+|+|.+..+.++.- +.+... ....-.-+.+||+||+||||||.-+++.+...|. ++++..-.-.
T Consensus 20 P~~L~efiGQ~~l~~~l~i-------~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~~i~k~ 89 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKI-------LIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGPAIEKA 89 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHH-------HHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECCC--SC
T ss_pred CCCHHHccCcHHHHhhhHH-------HHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccchhhhhH
Confidence 3445688998888877651 000000 0001124889999999999999999999887763 3432110000
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhh-ccC-----
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDL-LPR----- 580 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~-lp~----- 580 (996)
. +.... ...| .++-+|.+|.++... ...+++ +|.
T Consensus 90 ~--------------------------------dl~~i-l~~l--~~~~ILFIDEIHRln-----k~~qe~LlpamEd~~ 129 (233)
T PF05496_consen 90 G--------------------------------DLAAI-LTNL--KEGDILFIDEIHRLN-----KAQQEILLPAMEDGK 129 (233)
T ss_dssp H--------------------------------HHHHH-HHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSE
T ss_pred H--------------------------------HHHHH-HHhc--CCCcEEEEechhhcc-----HHHHHHHHHHhccCe
Confidence 0 11111 1112 233355557766542 111111 110
Q ss_pred ------C-----------CCCeEEEEEecCCCcCC-----c-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHH
Q 001918 581 ------F-----------GGETHIIISTRLPRVMN-----L-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEE 636 (996)
Q Consensus 581 ------~-----------~~gsrIIITTR~~~~~~-----~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~ 636 (996)
. .+=+-|=-|||...+.. . -+.+++..+.+|-.+++.+.+.... .-+.+.+.+|++
T Consensus 130 idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 130 IDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR 209 (233)
T ss_dssp EEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred EEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 0 11234445777765532 2 3458999999999999998886433 335677999999
Q ss_pred HhCCChH
Q 001918 637 KVGRLTM 643 (996)
Q Consensus 637 ~lgglPL 643 (996)
.+.|-|-
T Consensus 210 rsrGtPR 216 (233)
T PF05496_consen 210 RSRGTPR 216 (233)
T ss_dssp CTTTSHH
T ss_pred hcCCChH
Confidence 9999994
No 105
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.46 E-value=0.00067 Score=78.79 Aligned_cols=148 Identities=17% Similarity=0.259 Sum_probs=84.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|.|||+||+.+++.....| +.+.. . .+ +...++ .....+..+
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~-----s-~l--~~k~~g-------------------e~~~~lr~l 230 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVG-----S-EF--VQKYLG-------------------EGPRMVRDV 230 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh-----H-HH--HHHhcc-------------------hhHHHHHHH
Confidence 488999999999999999998765443 22211 0 11 011111 011223333
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhccC-----CCCCeEEEEEecCCCcC--------Cc-ce
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLLPR-----FGGETHIIISTRLPRVM--------NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~lp~-----~~~gsrIIITTR~~~~~--------~~-~~ 601 (996)
........+.+|+||++|....- .+. ..+..++.. ...+..||+||...... .. ..
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 310 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEE
Confidence 33333578899999998864100 000 123333321 11356788888765431 12 56
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 602 LKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
++++..+.++..++|..+....+....-...++++.+.|+--
T Consensus 311 I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sg 352 (398)
T PTZ00454 311 IEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISA 352 (398)
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCH
Confidence 899999999999999877653321111114567777766643
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0025 Score=77.75 Aligned_cols=213 Identities=14% Similarity=0.084 Sum_probs=108.7
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|-+...+.+.. .+..+ . -...+.++|+.|+||||+|+.++..+-..-. .-.-.+... ...
T Consensus 14 ~f~~iiGq~~v~~~L~~------~i~~~-~---~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~~~~c~~c---~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQN------AIDTG-R---VAHAFLFTGARGVGKTSTARILAKALNCEQG-LTAEPCNVC---PPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHH------HHHcC-C---CCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CCCCCCCcc---HHH
Confidence 34567787766666653 11111 0 1235789999999999999999987542110 000011110 000
Q ss_pred HHHHHHccCcc-CcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCC
Q 001918 510 LNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGE 584 (996)
Q Consensus 510 ~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~g 584 (996)
..+..--.... ..+.. . + ... +-+..+.+.+ ...++-++|+|+++.+..- ....|.+++......
T Consensus 80 ~~i~~g~~~d~~eid~~---s---~--~~v-~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~ 149 (576)
T PRK14965 80 VEITEGRSVDVFEIDGA---S---N--TGV-DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPH 149 (576)
T ss_pred HHHhcCCCCCeeeeecc---C---c--cCH-HHHHHHHHHHHhccccCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCC
Confidence 11111000000 00000 0 0 011 1122233332 1244557889999876421 113455555443345
Q ss_pred eEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh-HHHHHHHHHHhc--
Q 001918 585 THIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT-MGLAVVGAILSE-- 654 (996)
Q Consensus 585 srIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP-LAL~~~gs~L~~-- 654 (996)
+.+|++|.+ ..+. ....+++.+++.++....+...+.... .-+.+.+..|++.++|-. .|+..+-..+.-
T Consensus 150 ~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g 229 (576)
T PRK14965 150 VKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCG 229 (576)
T ss_pred eEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 666655544 3342 237889999999999988887664222 234566788999999854 565555333221
Q ss_pred CCCCHHHHHHHH
Q 001918 655 LPINPSRLLDTI 666 (996)
Q Consensus 655 ~~~s~~e~l~~L 666 (996)
..++.+++.+.+
T Consensus 230 ~~It~edV~~ll 241 (576)
T PRK14965 230 DAVGDDDVAELL 241 (576)
T ss_pred CCCCHHHHHHHh
Confidence 235555554443
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0054 Score=74.56 Aligned_cols=191 Identities=14% Similarity=0.038 Sum_probs=99.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-..++|.+...+.+.. .+..+ .....+.++|+.|+|||++|+.++..+-..-. ............
T Consensus 14 ~f~~viGq~~v~~~L~~------~i~~~----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~----~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKN------AIKQG----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP----PDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHH------HHHcC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC----CCCCCCCccHHH
Confidence 34577888887777763 11111 01245788999999999999999987532110 000000111111
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
..+......+....... .....+.+..+.+.. ...+.-++|+|+++.+..- ....|.+.+......+
T Consensus 80 ~~i~~g~~~dv~eidaa--------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-a~naLLKtLEepp~~~ 150 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA--------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-AFNALLKTLEEPPAHV 150 (559)
T ss_pred HHHhcCCCCCeEEeecc--------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-HHHHHHHHhcCCCCCe
Confidence 12211111110000000 001112223333333 1345568889999976321 1133444443333355
Q ss_pred EEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 586 HIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 586 rIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
.+|++|.. ..+. ....++..+++.++..+.+...+.... .-+.+.+..|++.++|-+.
T Consensus 151 ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 151 IFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMR 215 (559)
T ss_pred EEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55555543 3332 236789999999999999988775222 2345668888999988764
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.39 E-value=0.0016 Score=82.85 Aligned_cols=169 Identities=21% Similarity=0.269 Sum_probs=96.1
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-----C-CEEEE-EeCcCcc
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-----Y-KMVLW-VGGESRY 504 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-----F-~~v~w-i~~~~~~ 504 (996)
...+||+.+++++..-+. +..+ .-+.|+|++|+|||+||..++.++... . ...+| ++
T Consensus 179 ~~~igr~~ei~~~~~~L~------r~~~-----~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~----- 242 (821)
T CHL00095 179 DPVIGREKEIERVIQILG------RRTK-----NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD----- 242 (821)
T ss_pred CCCCCcHHHHHHHHHHHc------cccc-----CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee-----
Confidence 468999999999874111 1111 126799999999999999999987532 1 12233 32
Q ss_pred HHHHHHHHHHHc-cCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc------cc-hHHHhh
Q 001918 505 IRQNYLNLWSFL-DVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW------WD-DKLVMD 576 (996)
Q Consensus 505 ~~~~l~~La~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~------~~-~~~L~~ 576 (996)
. ...+ +.. +....++.+..+.+.+...++++|++|+++....- .+ ...|..
T Consensus 243 ~-------~~l~ag~~--------------~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp 301 (821)
T CHL00095 243 I-------GLLLAGTK--------------YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP 301 (821)
T ss_pred H-------HHHhccCC--------------CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH
Confidence 1 1111 110 00123344555555554567899999999754210 00 123333
Q ss_pred hccCCCCCeEEEEEecCCCc-----------CCcceEEccCCCHHHHHHHHhhhcC------CCCcccHHHHHHHHHHhC
Q 001918 577 LLPRFGGETHIIISTRLPRV-----------MNLEPLKLSYLSGVEAMSLMQGSVK------DYPITEVDALRVIEEKVG 639 (996)
Q Consensus 577 ~lp~~~~gsrIIITTR~~~~-----------~~~~~~~v~~L~~~EA~~Lf~~~a~------~~~~~~~~~a~~iv~~lg 639 (996)
.+.. +.-++|.+|..... ..+..++++.++.+|...++..... ... -..++...+++..+
T Consensus 302 ~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~-i~deal~~i~~ls~ 378 (821)
T CHL00095 302 ALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLS-ISDKALEAAAKLSD 378 (821)
T ss_pred HHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhh
Confidence 3332 23566666655432 1236789999999999888875432 111 23445666666665
Q ss_pred C
Q 001918 640 R 640 (996)
Q Consensus 640 g 640 (996)
+
T Consensus 379 ~ 379 (821)
T CHL00095 379 Q 379 (821)
T ss_pred c
Confidence 3
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.39 E-value=0.0012 Score=77.30 Aligned_cols=147 Identities=17% Similarity=0.232 Sum_probs=82.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|.|||+||+.++++....|- .+... .+.. ..++ .....+..+
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s--eL~~------k~~G-------------------e~~~~vr~l 268 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFL---RVVGS--ELIQ------KYLG-------------------DGPKLVREL 268 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc--hhhh------hhcc-------------------hHHHHHHHH
Confidence 4789999999999999999998765542 22111 1110 0010 011122223
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-----c--ch---HHHhhhcc---CC--CCCeEEEEEecCCCc-----C---Cc-ce
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW-----W--DD---KLVMDLLP---RF--GGETHIIISTRLPRV-----M---NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-----~--~~---~~L~~~lp---~~--~~gsrIIITTR~~~~-----~---~~-~~ 601 (996)
.+......+.+|+||++|....- . +. ..+..++. .+ ..+..||+||..... . .. ..
T Consensus 269 F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~ 348 (438)
T PTZ00361 269 FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRK 348 (438)
T ss_pred HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEE
Confidence 33333567889999998754110 0 00 11222321 11 235778888876443 1 12 68
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001918 602 LKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
++++..+.++..++|..++........-....++..+.|+-
T Consensus 349 I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 349 IEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCC
Confidence 89999999999999998875432111111345666666554
No 110
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.00052 Score=75.40 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=58.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|++|+|||.||..+++....+...+.|+. ..+.+..+.... .. .. ...+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~----~~-------------~~----~~~~ 161 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVAR----RE-------------LQ----LESA 161 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHH----hC-------------Cc----HHHH
Confidence 3899999999999999999998776665677874 333333332211 00 01 1123
Q ss_pred HHHHhcCCCEEEEEcCCCCccc-ccchHHHhhhccCCCCCeEEEEEecC
Q 001918 546 RKELMRNIPFLVIIDNLESEKD-WWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~-~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
.+.+ .+.=||||||+..... .+....|..++...-.+..+||||..
T Consensus 162 l~~l--~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 162 IAKL--DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HHHH--hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3344 3445999999975421 11123455555421113579999865
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00085 Score=58.96 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhh
Q 001918 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTS 964 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~ 964 (996)
++.++.+++++|.+|..+|++++|+++++++++++++
T Consensus 42 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 42 HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 3557899999999999999999999999999999874
No 112
>PRK12377 putative replication protein; Provisional
Probab=97.36 E-value=0.0006 Score=74.04 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=59.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|.+|+|||+||.++++.+..+...+.|+. ..+.+..+.....- . .....+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----~~~l~~~l~~~~~~--~------------------~~~~~~ 157 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----VPDVMSRLHESYDN--G------------------QSGEKF 157 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----HHHHHHHHHHHHhc--c------------------chHHHH
Confidence 4899999999999999999999887766678884 33333333322210 0 001123
Q ss_pred HHHHhcCCCEEEEEcCCCCc--ccccchHHHhhhccC-CCCCeEEEEEec
Q 001918 546 RKELMRNIPFLVIIDNLESE--KDWWDDKLVMDLLPR-FGGETHIIISTR 592 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~--~~~~~~~~L~~~lp~-~~~gsrIIITTR 592 (996)
.+.| .+--||||||+... ..| ..+.|..++.. ....-.+||||.
T Consensus 158 l~~l--~~~dLLiIDDlg~~~~s~~-~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 158 LQEL--CKVDLLVLDEIGIQRETKN-EQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHHh--cCCCEEEEcCCCCCCCCHH-HHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3444 45669999999542 222 33455555532 222345788885
No 113
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0082 Score=64.12 Aligned_cols=170 Identities=17% Similarity=0.186 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
+.+++.++|.-|.|||.+.+.....+-.+=-.++.++...-+.......+...|..+.. .......
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~--------------~~~~~~~ 115 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPK--------------VNVNAVL 115 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCcc--------------chhHHHH
Confidence 56689999999999999999555544433334445544333444455555555544211 0122233
Q ss_pred HHHHHHH----hcCCC-EEEEEcCCCCcccccchHHHhh---hcc---CCCCCeEEEEEecCCCc--------C----Cc
Q 001918 543 CRVRKEL----MRNIP-FLVIIDNLESEKDWWDDKLVMD---LLP---RFGGETHIIISTRLPRV--------M----NL 599 (996)
Q Consensus 543 ~~l~~~L----~~~~r-~LLVLDdvd~~~~~~~~~~L~~---~lp---~~~~gsrIIITTR~~~~--------~----~~ 599 (996)
..+.+.| .++++ +.+++|+++++.. ..++. +.. .+...-+|+..-..+-. . ..
T Consensus 116 e~~~~~L~al~~~g~r~v~l~vdEah~L~~----~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~ 191 (269)
T COG3267 116 EQIDRELAALVKKGKRPVVLMVDEAHDLND----SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI 191 (269)
T ss_pred HHHHHHHHHHHHhCCCCeEEeehhHhhhCh----hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE
Confidence 3333333 45666 9999999988632 33333 221 11112234443332211 1 12
Q ss_pred ce-EEccCCCHHHHHHHHhhhcCC----CCcccHHHHHHHHHHhCCChHHHHHHHH
Q 001918 600 EP-LKLSYLSGVEAMSLMQGSVKD----YPITEVDALRVIEEKVGRLTMGLAVVGA 650 (996)
Q Consensus 600 ~~-~~v~~L~~~EA~~Lf~~~a~~----~~~~~~~~a~~iv~~lgglPLAL~~~gs 650 (996)
.+ |++++++.++...++..+... .+--..+....|.....|.|.+|..++-
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 45 999999999999999988762 1222456688899999999999987754
No 114
>PRK06620 hypothetical protein; Validated
Probab=97.33 E-value=0.0029 Score=67.45 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|||++|+|||+|+..+++... ..++.. .. . . +
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~-------~~-----~---------------------~--~----- 80 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKD-------IF-----F---------------------N--E----- 80 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC-----CEEcch-------hh-----h---------------------c--h-----
Confidence 489999999999999998766532 123310 00 0 0 0
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCCc----C----C---cceEEccCCCHHHHH
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPRV----M----N---LEPLKLSYLSGVEAM 613 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~~----~----~---~~~~~v~~L~~~EA~ 613 (996)
+.+ +. .-+|++||++...+ ..+..++... ..|..||||++.... . . ..++++++++.++-.
T Consensus 81 -~~~-~~-~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 81 -EIL-EK-YNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred -hHH-hc-CCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHH
Confidence 112 22 24678899985421 3444443211 236789999886432 1 1 148999999999988
Q ss_pred HHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001918 614 SLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 614 ~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
+++.+.+.... .-..++..-|++.+.|--
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence 88877764211 223455556666655543
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0038 Score=75.69 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=108.6
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCccHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~~~~~~l 509 (996)
-.+++|-+.....+.. .+..+. -...+.++|+.|+||||+|+.++..+-.. -.. ...+... ...
T Consensus 15 f~diiGqe~iv~~L~~------~i~~~~----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~--~~pC~~C---~~C 79 (563)
T PRK06647 15 FNSLEGQDFVVETLKH------SIESNK----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT--PMPCGEC---SSC 79 (563)
T ss_pred HHHccCcHHHHHHHHH------HHHcCC----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC--CCCCccc---hHH
Confidence 3467777776666653 010110 12358899999999999999999976422 100 0001100 011
Q ss_pred HHHHHHccCccC-cccCCcccccchhhhcHHHHHHHHHHHH----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCCC
Q 001918 510 LNLWSFLDVDVG-IENCSDKSRIKSFEEQEEAAICRVRKEL----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGE 584 (996)
Q Consensus 510 ~~La~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~g 584 (996)
..+...-..... ..+. . ....++ +..+.+.+ ..+++-++|+|+++....- ..+.|.+.+....+.
T Consensus 80 ~~i~~~~~~dv~~idga---s-----~~~vdd-Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~ 149 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGA---S-----NTSVQD-VRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPY 149 (563)
T ss_pred HHHHcCCCCCeEEecCc---c-----cCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhcCHH-HHHHHHHhhccCCCC
Confidence 111110000000 0000 0 001112 22222222 1356668999999986431 113444555443346
Q ss_pred eEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHHH---HHHHh
Q 001918 585 THIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAVV---GAILS 653 (996)
Q Consensus 585 srIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~~---gs~L~ 653 (996)
+.+|++|.+. .+. ....+++.+++.++-.+.+...+.... .-+.+.+..|++.++|-+- |+..+ .++.
T Consensus 150 ~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~- 228 (563)
T PRK06647 150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFS- 228 (563)
T ss_pred EEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-
Confidence 6666666442 332 236799999999999999988764221 2346678889999999774 43333 2221
Q ss_pred cCCCCHHHHHHHH
Q 001918 654 ELPINPSRLLDTI 666 (996)
Q Consensus 654 ~~~~s~~e~l~~L 666 (996)
...++.++..+.+
T Consensus 229 ~~~It~e~V~~ll 241 (563)
T PRK06647 229 DSDITLEQIRSKM 241 (563)
T ss_pred CCCCCHHHHHHHh
Confidence 2235555554444
No 116
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.30 E-value=0.0024 Score=70.40 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=101.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCC------EEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYK------MVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~------~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 539 (996)
+.|+|.+|+|||+|++.|...+-..++ .|+.+.+-.. +....+..|...|+.+..... ...
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~------------~~~ 131 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD------------RVA 131 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC------------CHH
Confidence 789999999999999999987655442 4777777666 888889999999998864321 334
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCccccc--chHHHhhh---ccCCCCCeEEEEEecCC--------CcCC-cceEEcc
Q 001918 540 AAICRVRKELMRNIPFLVIIDNLESEKDWW--DDKLVMDL---LPRFGGETHIIISTRLP--------RVMN-LEPLKLS 605 (996)
Q Consensus 540 ~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~--~~~~L~~~---lp~~~~gsrIIITTR~~--------~~~~-~~~~~v~ 605 (996)
.....+.+.|+.-+-=+||+|.+.+.-..- ....+... +..--.=+-|.|-|++. ++.+ ...+.++
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp 211 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELP 211 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCC
Confidence 455566667755566689999998842110 01122222 22211234556666553 2222 3677777
Q ss_pred CCCHHHHH-HHHhhhcC----CC--CcccHHHHHHHHHHhCCChH
Q 001918 606 YLSGVEAM-SLMQGSVK----DY--PITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 606 ~L~~~EA~-~Lf~~~a~----~~--~~~~~~~a~~iv~~lgglPL 643 (996)
....++-. .|+..... .. .-...+++..|...++|+.=
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 77655433 44333221 11 12356677888888888763
No 117
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0058 Score=74.97 Aligned_cols=191 Identities=12% Similarity=-0.002 Sum_probs=99.4
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCccHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~~~~~~l~ 510 (996)
..++|.+...+.+.+ .+..+ . -..-+.++|+.|+||||+|+.++..+-... .....-.+.. .....
T Consensus 16 ~~liGq~~i~~~L~~------~l~~~-r---l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~---C~~C~ 82 (620)
T PRK14948 16 DELVGQEAIATTLKN------ALISN-R---IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK---CELCR 82 (620)
T ss_pred hhccChHHHHHHHHH------HHHcC-C---CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc---cHHHH
Confidence 467777777776653 00000 0 112478999999999999999999764321 1100011111 11111
Q ss_pred HHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001918 511 NLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 511 ~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
.+......+.-.... .. ....+.+..+.+.+. .+++-++|+|+++.+..- ....|.+++......+.
T Consensus 83 ~i~~g~h~D~~ei~~---~~-----~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tv 153 (620)
T PRK14948 83 AIAAGNALDVIEIDA---AS-----NTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVV 153 (620)
T ss_pred HHhcCCCccEEEEec---cc-----cCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH-HHHHHHHHHhcCCcCeE
Confidence 111111111000000 00 001122222333331 245568899999976321 11345555543333565
Q ss_pred EEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHH
Q 001918 587 IIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 587 IIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLA 644 (996)
+|++|.+. .+. ....+++..++.++....+.+.+.... .-..+.+..|++.++|-+.-
T Consensus 154 fIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~ 218 (620)
T PRK14948 154 FVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRD 218 (620)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH
Confidence 66555543 231 237788899999999888887765322 22346688999999997753
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.28 E-value=0.00078 Score=76.99 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=56.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc---cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR---YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~---~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|+|++|.|||||+..+++.+... |+..+|+-.... .+.+.+..+...+-......+. .....-....
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~------~~~~~va~~v 243 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPA------SRHVQVAEMV 243 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCCh------HHHHHHHHHH
Confidence 69999999999999999999987765 888888876633 4444444442211111111110 0000011122
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+..+.....+++++|++|.+...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 333333334789999999999864
No 119
>CHL00176 ftsH cell division protein; Validated
Probab=97.28 E-value=0.0038 Score=76.66 Aligned_cols=145 Identities=16% Similarity=0.234 Sum_probs=82.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.|+|++|.|||+||+.++......| +.+++. .+...+ .+. ....+..+.
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~p~---i~is~s--~f~~~~------~g~-------------------~~~~vr~lF 268 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPF---FSISGS--EFVEMF------VGV-------------------GAARVRDLF 268 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe---eeccHH--HHHHHh------hhh-------------------hHHHHHHHH
Confidence 89999999999999999998753322 122110 111100 000 011122222
Q ss_pred HHHhcCCCEEEEEcCCCCcccc--------c--chHHHhhhcc---C--CCCCeEEEEEecCCCc-----C---Cc-ceE
Q 001918 547 KELMRNIPFLVIIDNLESEKDW--------W--DDKLVMDLLP---R--FGGETHIIISTRLPRV-----M---NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~--------~--~~~~L~~~lp---~--~~~gsrIIITTR~~~~-----~---~~-~~~ 602 (996)
+......+++|+||++|....- . ....+..++. . ...+..||.||..... . .. ..+
T Consensus 269 ~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I 348 (638)
T CHL00176 269 KKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQI 348 (638)
T ss_pred HHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEE
Confidence 2223678899999999865210 0 0012333331 1 1235566667765432 1 12 678
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC
Q 001918 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl 641 (996)
.++..+.++-.++|..++...+.........+++.+.|.
T Consensus 349 ~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 349 TVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGF 387 (638)
T ss_pred EECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCC
Confidence 999999999999999988653322333456777777773
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.24 E-value=0.002 Score=80.44 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=88.8
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC------CEEEEEeCcCcc
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY------KMVLWVGGESRY 504 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~~v~wi~~~~~~ 504 (996)
-..++||+.+++++.+- +.+.. ..-+.|+|++|+|||+||..++.++...- +..+|-- +
T Consensus 185 ~~~liGR~~ei~~~i~i------L~r~~-----~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQV------LCRRR-----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----D 249 (758)
T ss_pred CCcCcCCCHHHHHHHHH------HhccC-----CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----c
Confidence 34689999999998741 11111 11267999999999999999998764331 2233321 1
Q ss_pred HHHHHHHHHHHc-cCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc----chHH----Hh
Q 001918 505 IRQNYLNLWSFL-DVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW----DDKL----VM 575 (996)
Q Consensus 505 ~~~~l~~La~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~----~~~~----L~ 575 (996)
. ...+ +.. +..+.+..+..+.+.+...++.+|+||+++.+-.-- ...+ |.
T Consensus 250 ~-------~~llaG~~--------------~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLk 308 (758)
T PRK11034 250 I-------GSLLAGTK--------------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIK 308 (758)
T ss_pred H-------HHHhcccc--------------hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHH
Confidence 1 1111 110 001233445555555645677899999998641100 0112 33
Q ss_pred hhccCCCCCeEEEEEecCCCc----------C-CcceEEccCCCHHHHHHHHhhhcC
Q 001918 576 DLLPRFGGETHIIISTRLPRV----------M-NLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 576 ~~lp~~~~gsrIIITTR~~~~----------~-~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
.++.. +.-+||-+|....+ . ....++|++++.++..++|.....
T Consensus 309 p~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 309 PLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred HHHhC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 33432 23555555554332 1 237899999999999999997653
No 121
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.00068 Score=74.05 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
-+.|+|++|+|||+||..+++....+-..+.|+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 489999999999999999999876554445565
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.23 E-value=0.0022 Score=81.92 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=87.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-------CEEEEEeCcC
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-------KMVLWVGGES 502 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-------~~v~wi~~~~ 502 (996)
+-..++||+.+++++... +.+.. ..-+.|+|++|+|||+||..++.++...+ ..+++++.
T Consensus 171 ~~~~~igr~~ei~~~~~~------l~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~-- 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQV------LSRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM-- 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHH------HhcCC-----CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH--
Confidence 445699999999988731 11111 12367999999999999999999876532 12333421
Q ss_pred ccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccc---cchHHHhhhc
Q 001918 503 RYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDW---WDDKLVMDLL 578 (996)
Q Consensus 503 ~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~---~~~~~L~~~l 578 (996)
. .+.. +.. +..+.+..+..+.+.+. .+++++|++|+++....- -+..+...++
T Consensus 238 ---~----~l~a--~~~--------------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~L 294 (852)
T TIGR03346 238 ---G----ALIA--GAK--------------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNML 294 (852)
T ss_pred ---H----HHhh--cch--------------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHh
Confidence 0 1000 000 00122334444555552 356899999999975310 0001122222
Q ss_pred -cCCC-CCeEEEEEecCCCc----------C-CcceEEccCCCHHHHHHHHhhhcC
Q 001918 579 -PRFG-GETHIIISTRLPRV----------M-NLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 579 -p~~~-~gsrIIITTR~~~~----------~-~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
|... +.-++|.+|..... . ....+.|+.++.++..+++.....
T Consensus 295 k~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 295 KPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred chhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2211 13455555554322 1 136789999999999999987643
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.22 E-value=0.0048 Score=69.05 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=104.5
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHH
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNY 509 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l 509 (996)
.++|-+|+.++..+..-.+.... .-..+|.|+|-.|.|||.+.+++.+...- ...|+++... +....+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~--------~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ecft~~~ll 73 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC--------TIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVECFTYAILL 73 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc--------ccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHhccHHHHH
Confidence 34677888888887631111111 11236799999999999999999987632 3579988877 788888
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH---hcCCCEEEEEcCCCCcccccchHHHhhh------ccC
Q 001918 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL---MRNIPFLVIIDNLESEKDWWDDKLVMDL------LPR 580 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~r~LLVLDdvd~~~~~~~~~~L~~~------lp~ 580 (996)
..|...++.... ++...+. ..+...+.+..+.+|= .+++.++|||||+|...+. ++..+..+ ++.
T Consensus 74 e~IL~~~~~~d~-dg~~~~~----~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 74 EKILNKSQLADK-DGDKVEG----DAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-DAILLQCLFRLYELLNE 147 (438)
T ss_pred HHHHHHhccCCC-chhhhhh----HHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-chHHHHHHHHHHHHhCC
Confidence 888887752211 1110000 0122334444455533 1356899999999988664 33333333 332
Q ss_pred CCCCeEEEEEecCCCc---C---C---cceEEccCCCHHHHHHHHhhhcC
Q 001918 581 FGGETHIIISTRLPRV---M---N---LEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 581 ~~~gsrIIITTR~~~~---~---~---~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
..-+||++-.... . + ..++..+..+.+|-.++|.+.-+
T Consensus 148 ---~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 148 ---PTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred ---CceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2445555544322 1 1 24667789999999999987654
No 124
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.0013 Score=72.39 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~ 499 (996)
-+.|+|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 48999999999999999999988766 55677884
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.19 E-value=0.0017 Score=82.63 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=88.8
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-------CEEEEEeCc
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-------KMVLWVGGE 501 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-------~~v~wi~~~ 501 (996)
++-..++||+.+++++.. -|.+.. ..-+.|+|++|+|||+||..++.++.... ..+++++..
T Consensus 175 ~~l~~vigr~~ei~~~i~------iL~r~~-----~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQ------VLQRRT-----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CCCCcCCCCHHHHHHHHH------HHhcCC-----cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 344569999999998763 111111 12367999999999999999999876432 133444211
Q ss_pred CccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccc------cc-hHH
Q 001918 502 SRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDW------WD-DKL 573 (996)
Q Consensus 502 ~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~------~~-~~~ 573 (996)
..+ .+.. +....++.+..+.+.+. ..++++|++|+++.+..- .+ .+.
T Consensus 244 -----~l~------ag~~--------------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~ 298 (857)
T PRK10865 244 -----ALV------AGAK--------------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM 298 (857)
T ss_pred -----hhh------hccc--------------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHH
Confidence 100 0000 00123344444555442 367899999999875210 00 122
Q ss_pred HhhhccCCCCCeEEEEEecCCCc----------C-CcceEEccCCCHHHHHHHHhhhcC
Q 001918 574 VMDLLPRFGGETHIIISTRLPRV----------M-NLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 574 L~~~lp~~~~gsrIIITTR~~~~----------~-~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
|...+.. +.-++|-+|....+ . ....+.|...+.++..+++.....
T Consensus 299 lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 299 LKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred hcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhh
Confidence 3333322 23556655554432 1 125788898999999999977653
No 126
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.19 E-value=0.0077 Score=71.73 Aligned_cols=174 Identities=11% Similarity=0.168 Sum_probs=97.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.++|++|+|||.+|+.+++.+.-.| +-++. . ..++...+ ..+..+..+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~-----~-------~l~~~~vG---------------ese~~l~~~ 310 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDV-----G-------KLFGGIVG---------------ESESRMRQM 310 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEh-----H-------HhcccccC---------------hHHHHHHHH
Confidence 389999999999999999999865433 22211 1 01110000 111223333
Q ss_pred HHHHhcCCCEEEEEcCCCCccc----ccch----HHHhhh---ccCCCCCeEEEEEecCCCc-----C---Cc-ceEEcc
Q 001918 546 RKELMRNIPFLVIIDNLESEKD----WWDD----KLVMDL---LPRFGGETHIIISTRLPRV-----M---NL-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~----~~~~----~~L~~~---lp~~~~gsrIIITTR~~~~-----~---~~-~~~~v~ 605 (996)
.+..+...+++|+||++|..-. ..+. ..+..+ +.....+.-||.||.+... . .. ..+.|+
T Consensus 311 f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~ 390 (489)
T CHL00195 311 IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLD 390 (489)
T ss_pred HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeC
Confidence 3333357899999999986311 0010 112222 2222234556667766542 1 22 678999
Q ss_pred CCCHHHHHHHHhhhcCCC-Ccc-cHHHHHHHHHHhCCChHH-HHHH---HH---HHhcCCCCHHHHHHHHhcC
Q 001918 606 YLSGVEAMSLMQGSVKDY-PIT-EVDALRVIEEKVGRLTMG-LAVV---GA---ILSELPINPSRLLDTINRM 669 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~-~~~-~~~~a~~iv~~lgglPLA-L~~~---gs---~L~~~~~s~~e~l~~L~~~ 669 (996)
..+.++-.++|..+.... +.. .......+++.+.|.-=| |+.+ |. +-.++.++.+++++.+++.
T Consensus 391 lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 391 LPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQF 463 (489)
T ss_pred CcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc
Confidence 999999999999888642 211 112256777777776533 2221 11 1123446778888887663
No 127
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.17 E-value=0.0027 Score=76.39 Aligned_cols=146 Identities=14% Similarity=0.235 Sum_probs=80.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
+.|+|++|+|||+||+.++....-.| +.++ .. .+.. ...+. ....+..+.
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~~---~~i~-----~~-~~~~--~~~g~-------------------~~~~l~~~f 140 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVPF---FSIS-----GS-DFVE--MFVGV-------------------GASRVRDLF 140 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe---eecc-----HH-HHHH--HHhcc-------------------cHHHHHHHH
Confidence 88999999999999999998754332 1121 11 1100 00110 011122222
Q ss_pred HHHhcCCCEEEEEcCCCCcccc----c------chHHHhhhcc---C--CCCCeEEEEEecCCCc-----C---Cc-ceE
Q 001918 547 KELMRNIPFLVIIDNLESEKDW----W------DDKLVMDLLP---R--FGGETHIIISTRLPRV-----M---NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~----~------~~~~L~~~lp---~--~~~gsrIIITTR~~~~-----~---~~-~~~ 602 (996)
+......+.+|+||++|....- . ....+..++. . ...+..||.||..... . .. ..+
T Consensus 141 ~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i 220 (495)
T TIGR01241 141 EQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQV 220 (495)
T ss_pred HHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEE
Confidence 2222567889999999874210 0 0012222321 1 1124556666655432 1 12 679
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001918 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
+++.++.++-.++|..++...+.........+++.+.|.-
T Consensus 221 ~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 221 VVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred EcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCC
Confidence 9999999999999998876433222222557888887744
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.16 E-value=0.0042 Score=69.16 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=70.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-C--C-EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-Y--K-MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F--~-~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
-+.|+|++|.|||++|+.++..+... + . ..+.++. . .+...+ .+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~-----~----~l~~~~---~g~--------------~~--- 110 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR-----D----DLVGQY---IGH--------------TA--- 110 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH-----H----HHhHhh---ccc--------------ch---
Confidence 38999999999999999988866432 1 1 2333321 1 111111 000 01
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcc------cccch---HHHhhhccCCCCCeEEEEEecCCCc-----CC-------cc
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEK------DWWDD---KLVMDLLPRFGGETHIIISTRLPRV-----MN-------LE 600 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~------~~~~~---~~L~~~lp~~~~gsrIIITTR~~~~-----~~-------~~ 600 (996)
..+.+.+.....-+|+||+++.+. .+ .. ..|..++.....+.+||+++..... .+ ..
T Consensus 111 -~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~-~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~ 188 (284)
T TIGR02880 111 -PKTKEILKRAMGGVLFIDEAYYLYRPDNERDY-GQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAH 188 (284)
T ss_pred -HHHHHHHHHccCcEEEEechhhhccCCCccch-HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCc
Confidence 112233323334688999998541 11 11 2333444433345677776643221 11 25
Q ss_pred eEEccCCCHHHHHHHHhhhcC
Q 001918 601 PLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
.+++++++.+|-.+|+...+.
T Consensus 189 ~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 189 HVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcCHHHHHHHHHHHHH
Confidence 789999999999999988875
No 129
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.00085 Score=70.13 Aligned_cols=114 Identities=18% Similarity=0.068 Sum_probs=69.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
++.|+|..|.||||+|..++.+...+...++.+... -....+...++..+++...... + ....+....+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~-~d~~~~~~~i~~~lg~~~~~~~---------~-~~~~~~~~~~ 72 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA-IDDRYGEGKVVSRIGLSREAIP---------V-SSDTDIFELI 72 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc-ccccccCCcEecCCCCcccceE---------e-CChHHHHHHH
Confidence 789999999999999999999987766666656311 0111223334555554322100 0 1233444444
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccchHHHhhhccC-CCCCeEEEEEecCCCc
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPR-FGGETHIIISTRLPRV 596 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~-~~~gsrIIITTR~~~~ 596 (996)
.+ . .++.-+||+|.+.-. +.+++.+++.. ...|..||+|.++...
T Consensus 73 ~~-~-~~~~dvviIDEaq~l----~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 73 EE-E-GEKIDCVLIDEAQFL----DKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred Hh-h-CCCCCEEEEEccccC----CHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 44 2 455568999999654 23445555433 2347899999998654
No 130
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0073 Score=68.05 Aligned_cols=166 Identities=11% Similarity=0.012 Sum_probs=90.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCcc-Ccc-cCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDV-GIE-NCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+.++|+.|+||+++|..++..+--+-...+ . ... ....+. .-..+. ... ..++.........-..+.+.
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~----~-~c~--~c~~~~-~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR 99 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPA----A-AQR--TRQLIA-AGTHPDLQLVSFIPNRTGDKLRTEIVIEQVR 99 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCC----C-cch--HHHHHh-cCCCCCEEEEecCCCcccccccccccHHHHH
Confidence 5889999999999999999987543211000 0 000 000010 000000 000 00000000000001123344
Q ss_pred HHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHH
Q 001918 544 RVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAM 613 (996)
Q Consensus 544 ~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~ 613 (996)
.+.+.+. .++.=++|+|++|....- ....|.+.+-...+++.+|++|.+.. +. ....+.+.+++.+++.
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~ 178 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEAL 178 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHH
Confidence 4555551 245568899999986431 22455556644445777777777643 32 2478999999999999
Q ss_pred HHHhhhcCCCCcccHHHHHHHHHHhCCChHHH
Q 001918 614 SLMQGSVKDYPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 614 ~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL 645 (996)
+.+.... ...+.+..++..++|.|+..
T Consensus 179 ~~L~~~~-----~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 179 AWLLAQG-----VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred HHHHHcC-----CChHHHHHHHHHcCCCHHHH
Confidence 9997642 12233667899999999843
No 131
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0067 Score=68.95 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=91.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
-..++|+.|+||+++|.+++..+--. -... .+... .+-..+. ....+.-..-.++... .. -..+.+.
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C---~sC~~~~-~g~HPD~~~i~p~~~~-~~---I~idqiR 94 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC---RGCQLMQ-AGTHPDYYTLTPEKGK-SS---LGVDAVR 94 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC---HHHHHHH-cCCCCCEEEEeccccc-cc---CCHHHHH
Confidence 47899999999999999999876321 1100 11111 0111111 0000000000000000 00 1123344
Q ss_pred HHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHH
Q 001918 544 RVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAM 613 (996)
Q Consensus 544 ~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~ 613 (996)
.+.+.+. .+++=++|+|+++....- ....|.+.+-..++++.+|.+|.+.. +. ....+.+++++.+++.
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~ 173 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYAL 173 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHH
Confidence 4555551 255568899999986432 23456666644445777777777654 32 2478899999999999
Q ss_pred HHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 614 SLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 614 ~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
+.+....+ ...+.+..++..++|.|+
T Consensus 174 ~~L~~~~~----~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 174 TWLSREVT----MSQDALLAALRLSAGAPG 199 (334)
T ss_pred HHHHHccC----CCHHHHHHHHHHcCCCHH
Confidence 98876532 123346788999999995
No 132
>PRK09183 transposase/IS protein; Provisional
Probab=97.12 E-value=0.0018 Score=71.00 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+.|+|++|+|||+||..+++........+.|++
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5889999999999999999987655544566764
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.07 E-value=0.0069 Score=74.47 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEE--EecCCCc-C-----CcceEEccCCCHHHHH
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIII--STRLPRV-M-----NLEPLKLSYLSGVEAM 613 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIII--TTR~~~~-~-----~~~~~~v~~L~~~EA~ 613 (996)
...+.+.| .+++++++.|+.+....- ..+.+..++....+...|+| ||++... . ....+.+.+++.+|..
T Consensus 282 Q~~Ll~~L-e~~~v~~~~~~~~~~~~~-~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 282 QNKLLKVL-EDKRVEFSSSYYDPDDPN-VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHH-hhCeEEeecceeccCCcc-cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 44555555 556666665544432110 01334444443333344555 5665432 1 2357789999999999
Q ss_pred HHHhhhcCCCCc-ccHHHHHHHHHHhCCChHHHHHHHHH
Q 001918 614 SLMQGSVKDYPI-TEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 614 ~Lf~~~a~~~~~-~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
+++...+..... -..++...|.++...-+-++..++..
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999998763221 23455666777766556666665443
No 134
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.07 E-value=0.0038 Score=62.34 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=31.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
++|+|.+|.||||++..++.....+-..++|++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 7899999999999999999988776678889987654
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.07 E-value=0.0042 Score=78.37 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=84.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.++|++|+|||+||+++++.....| +.+.. . .+ +.... ...+..+..+
T Consensus 489 giLL~GppGtGKT~lakalA~e~~~~f---i~v~~-----~----~l---~~~~v---------------Gese~~i~~~ 538 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESGANF---IAVRG-----P----EI---LSKWV---------------GESEKAIREI 538 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh-----H----HH---hhccc---------------CcHHHHHHHH
Confidence 388999999999999999999865443 22211 0 11 10000 0122334445
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc--------cchHHHhhh---ccC--CCCCeEEEEEecCCCc-----C---Cc-ceEE
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW--------WDDKLVMDL---LPR--FGGETHIIISTRLPRV-----M---NL-EPLK 603 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~--------~~~~~L~~~---lp~--~~~gsrIIITTR~~~~-----~---~~-~~~~ 603 (996)
.+......+.+|+||++|.+..- .....+..+ +.. ...+..||.||..... . .. ..+.
T Consensus 539 f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~ 618 (733)
T TIGR01243 539 FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLIL 618 (733)
T ss_pred HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence 55444677899999999864110 000122222 221 1224556667765543 1 22 6889
Q ss_pred ccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001918 604 LSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
++..+.++-.++|..+....+.........+++.+.|.-
T Consensus 619 v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 619 VPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 999999999999987766443222112456777777654
No 136
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.06 E-value=0.00064 Score=70.25 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=55.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|.+|+|||.||..+++....+-..+.|+. ..+.+..|... ... . . ...+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-----~~~L~~~l~~~----~~~-~------------~----~~~~ 102 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-----ASDLLDELKQS----RSD-G------------S----YEEL 102 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-----HHHHHHHHHCC----HCC-T------------T----HCHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-----cCceecccccc----ccc-c------------c----hhhh
Confidence 3899999999999999999998776555678883 44444444321 110 0 1 1123
Q ss_pred HHHHhcCCCEEEEEcCCCCccc-ccchHHHhhhccC-CCCCeEEEEEecC
Q 001918 546 RKELMRNIPFLVIIDNLESEKD-WWDDKLVMDLLPR-FGGETHIIISTRL 593 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~-~~~~~~L~~~lp~-~~~gsrIIITTR~ 593 (996)
.+.| . +-=||||||+-.... -|..+.+.+++.. .. ...+||||..
T Consensus 103 ~~~l-~-~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~~~tIiTSN~ 149 (178)
T PF01695_consen 103 LKRL-K-RVDLLILDDLGYEPLSEWEAELLFEIIDERYE-RKPTIITSNL 149 (178)
T ss_dssp HHHH-H-TSSCEEEETCTSS---HHHHHCTHHHHHHHHH-T-EEEEEESS
T ss_pred cCcc-c-cccEecccccceeeecccccccchhhhhHhhc-ccCeEeeCCC
Confidence 3445 2 335788999975421 1122333333321 12 2468889864
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.03 E-value=0.0036 Score=69.71 Aligned_cols=126 Identities=15% Similarity=0.197 Sum_probs=69.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-C---CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-Y---KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F---~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.+.++|++|+|||++|+.+++.+... + ..++.++ .. .+...+ .+. ..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-----~~----~l~~~~---~g~--------------~~--- 111 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-----RD----DLVGQY---IGH--------------TA--- 111 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-----HH----HHHHHH---hcc--------------ch---
Confidence 48899999999999999998865422 2 1233332 11 111111 000 00
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCccc-----ccchHHH---hhhccCCCCCeEEEEEecCCCc----------C-Cc-ce
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEKD-----WWDDKLV---MDLLPRFGGETHIIISTRLPRV----------M-NL-EP 601 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~-----~~~~~~L---~~~lp~~~~gsrIIITTR~~~~----------~-~~-~~ 601 (996)
..+...+.....-+|+||+++.+.. -++.+.+ ..++.......+||+++....+ . .. ..
T Consensus 112 -~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~ 190 (287)
T CHL00181 112 -PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANH 190 (287)
T ss_pred -HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCce
Confidence 1122333222335899999986410 0122333 3334333345677777653222 1 12 57
Q ss_pred EEccCCCHHHHHHHHhhhcC
Q 001918 602 LKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~ 621 (996)
+++++++.+|-.+++...+.
T Consensus 191 i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 191 VDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred EEcCCcCHHHHHHHHHHHHH
Confidence 99999999999999888874
No 138
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.02 E-value=0.64 Score=53.85 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=78.1
Q ss_pred CEEEEEcCCCCcccccc--hHHHhhhccC--CCCCeEEEEEecCCCc--------CC-c-ceEEccCCCHHHHHHHHhhh
Q 001918 554 PFLVIIDNLESEKDWWD--DKLVMDLLPR--FGGETHIIISTRLPRV--------MN-L-EPLKLSYLSGVEAMSLMQGS 619 (996)
Q Consensus 554 r~LLVLDdvd~~~~~~~--~~~L~~~lp~--~~~gsrIIITTR~~~~--------~~-~-~~~~v~~L~~~EA~~Lf~~~ 619 (996)
+-+||+||+.....-.+ -+.|.++-.. ..+=-|||++|-+... .+ + +.+.+...+++-|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 56899999976432100 0223333110 1235789999988654 11 2 78899999999999999999
Q ss_pred cCCCC---------------------cccHHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHhc
Q 001918 620 VKDYP---------------------ITEVDALRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTINR 668 (996)
Q Consensus 620 a~~~~---------------------~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~~ 668 (996)
+.... ..+.......++.+||-=+=|+.++..++. |.++++.++.+-.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks-Ge~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS-GESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 86321 123445678889999999999999999985 6788877776644
No 139
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0027 Score=68.39 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC------CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchh-hhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR------YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSF-EEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~------F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~-~~~ 537 (996)
.++.|+|.+|.|||+||.+++...... -..++|++.+..-....+..+++.++........ ...-.... ..+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~-~i~~~~~~~~~~ 98 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLD-NIYVARAYNSDH 98 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhc-CEEEEecCCHHH
Confidence 489999999999999999998654322 2689999877641123444454444332211000 00000000 012
Q ss_pred HHHHHHHHHHHHhcC-CCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELMRN-IPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~-~r~LLVLDdvd~~ 565 (996)
..+.+..+.+.+... +.-|||+|.+...
T Consensus 99 l~~~l~~l~~~l~~~~~~~liVIDSis~~ 127 (235)
T cd01123 99 QLQLLEELEAILIESSRIKLVIVDSVTAL 127 (235)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEeCcHHH
Confidence 234445566666445 7779999999753
No 140
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.01 E-value=0.011 Score=66.83 Aligned_cols=147 Identities=10% Similarity=0.096 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
..+++|||++|+|||.+|+.++.++.-.| +-+++ . ..+.-..+ ..+..+.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~---i~vsa-----~-------eL~sk~vG---------------EsEk~IR 197 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMSA-----G-------ELESENAG---------------EPGKLIR 197 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEEH-----H-------HhhcCcCC---------------cHHHHHH
Confidence 35799999999999999999999876543 22221 1 11111111 1222222
Q ss_pred HHHHHH-----hcCCCEEEEEcCCCCccccc-----c-hHHHh--hhc-----------c------CCCCCeEEEEEecC
Q 001918 544 RVRKEL-----MRNIPFLVIIDNLESEKDWW-----D-DKLVM--DLL-----------P------RFGGETHIIISTRL 593 (996)
Q Consensus 544 ~l~~~L-----~~~~r~LLVLDdvd~~~~~~-----~-~~~L~--~~l-----------p------~~~~gsrIIITTR~ 593 (996)
.+.+.- .+.++++|++|++|..---. . ..++. .++ + ....+..||+||.+
T Consensus 198 ~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 198 QRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred HHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 222211 14678999999998642110 0 01221 222 1 11346778889877
Q ss_pred CCcCC--------c-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 594 PRVMN--------L-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 594 ~~~~~--------~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
..... . ..| ...+.++-.+++..+....... .....+|++...|-||
T Consensus 278 pd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 278 FSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPL 333 (413)
T ss_pred cccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCc
Confidence 66421 1 233 3457777778887766533322 2335566666666654
No 141
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.0035 Score=65.83 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=45.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
.+|+++|+.|+||||.+..++.++..+-..+..+.++.- ...+.+..+++.++++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 479999999999999999999988777667888887754 55677888899998774
No 142
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.99 E-value=0.0063 Score=61.42 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEE---EeCcCc-cHHHHHHHHHHHccCccCcccC---Ccccccchhhhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLW---VGGESR-YIRQNYLNLWSFLDVDVGIENC---SDKSRIKSFEEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~w---i~~~~~-~~~~~l~~La~~L~~~~~~~~~---~~~~~~~~~~~~ 537 (996)
++|-|++..|-||||+|...+.+...+-..+.+ +..... .-...+..+. ++.....+. ............
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCccCCCChHHHHHH
Confidence 468899999999999999999987666545555 443212 1122222221 111110000 000000000011
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCcc--cccchHHHhhhccCCCCCeEEEEEecCCC
Q 001918 538 EEAAICRVRKELMRNIPFLVIIDNLESEK--DWWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~~--~~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
..+.....++.+..+.-=|||||.+...- .+.+.+.+.+++.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22344555555534455699999987642 22245677888866666889999999954
No 143
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0093 Score=67.86 Aligned_cols=141 Identities=14% Similarity=0.080 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
....++|+.|+|||++|+.++..+-.. .... .+... .....+.. ...+.-.....+... ...+.+
T Consensus 29 ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C---~~c~~~~~-~~hpD~~~i~~~~~~------i~id~i 95 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC---TNCKRIDS-GNHPDVHLVAPDGQS------IKKDQI 95 (329)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC---HHHHHHhc-CCCCCEEEecccccc------CCHHHH
Confidence 367999999999999999999875422 1110 11111 01111110 000000000000000 011223
Q ss_pred HHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHH
Q 001918 543 CRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEA 612 (996)
Q Consensus 543 ~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA 612 (996)
..+.+.+. .+.+=++|+|+++....- ....|.+.+...+.++.+|++|.+.. +. ....+++.+++.++.
T Consensus 96 r~l~~~~~~~~~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~ 174 (329)
T PRK08058 96 RYLKEEFSKSGVESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESL 174 (329)
T ss_pred HHHHHHHhhCCcccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHH
Confidence 33334441 244557899999876431 12456666654445777777776643 32 247899999999999
Q ss_pred HHHHhhh
Q 001918 613 MSLMQGS 619 (996)
Q Consensus 613 ~~Lf~~~ 619 (996)
.+.|...
T Consensus 175 ~~~L~~~ 181 (329)
T PRK08058 175 IQRLQEE 181 (329)
T ss_pred HHHHHHc
Confidence 8888764
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.97 E-value=0.0056 Score=66.75 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=102.4
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc--CCC-EEEEEeCcCc-
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ--RYK-MVLWVGGESR- 503 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~--~F~-~v~wi~~~~~- 503 (996)
|....+++|-+...+-|.....+ ...+....+|++|.|||+-|+.++.++-. -|+ +++=.++..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-----------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-----------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-----------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 45566888888777777631111 12346899999999999999999987643 243 4443333322
Q ss_pred --c-HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCC-EEEEEcCCCCccc--ccchHHHhh
Q 001918 504 --Y-IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIP-FLVIIDNLESEKD--WWDDKLVMD 576 (996)
Q Consensus 504 --~-~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r-~LLVLDdvd~~~~--~~~~~~L~~ 576 (996)
+ +++.....++..... .+.+. ..++ -.+|||++|.... | ..|+.
T Consensus 101 Gisvvr~Kik~fakl~~~~--------------------------~~~~~~~~~~fKiiIlDEcdsmtsdaq---~aLrr 151 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLL--------------------------KRSDGYPCPPFKIIILDECDSMTSDAQ---AALRR 151 (346)
T ss_pred cccchhhhhcCHHHHhhcc--------------------------ccccCCCCCcceEEEEechhhhhHHHH---HHHHH
Confidence 1 111111111111110 00010 1223 4678999998632 3 56667
Q ss_pred hccCCCCCeEEEEEecC-CCcC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCC
Q 001918 577 LLPRFGGETHIIISTRL-PRVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGR 640 (996)
Q Consensus 577 ~lp~~~~gsrIIITTR~-~~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgg 640 (996)
.+..+...++.|..+-. ..+. ....+..++|..++..+-|...+.... .-+.+..+.|+++++|
T Consensus 152 ~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 152 TMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 66665556665555444 3332 236789999999999999998886322 3355667788887776
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.023 Score=64.08 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC---------------CCEEEEEeCcC----ccHHHHHHHHHHHccCccCcccC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR---------------YKMVLWVGGES----RYIRQNYLNLWSFLDVDVGIENC 525 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~---------------F~~v~wi~~~~----~~~~~~l~~La~~L~~~~~~~~~ 525 (996)
....++|+.|+||+++|..++..+-.. ++-..|+.-.. ....... +...+...
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~---~~~~~~~~----- 98 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE---AEEAGLKR----- 98 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh---hhhccccc-----
Confidence 368999999999999999999975322 22334443110 0000000 00111000
Q ss_pred CcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCC-CcC---
Q 001918 526 SDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLP-RVM--- 597 (996)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-~~~--- 597 (996)
+.. .. -..+.+..+.+.+. .+++-++|+|+++....- ....|.+.+-..+ .+.+|++|.+. .+.
T Consensus 99 --~~~-~~---I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI 170 (314)
T PRK07399 99 --KAP-PQ---IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPSPESLLPTI 170 (314)
T ss_pred --ccc-cc---CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECChHhCcHHH
Confidence 000 00 01123445666662 356678999999876431 1234666664333 44555555443 342
Q ss_pred --CcceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHH
Q 001918 598 --NLEPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAV 647 (996)
Q Consensus 598 --~~~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~ 647 (996)
....+++++++.++..+.+........ .......++..++|-|.....
T Consensus 171 ~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 171 VSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HhhceEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCCHHHHHH
Confidence 247999999999999999998754211 111135789999999965433
No 146
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.90 E-value=0.0027 Score=65.58 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=30.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
+.|.|.+|+|||+||.++++.....-..++|+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 689999999999999999988766666788997653
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.89 E-value=0.0037 Score=67.78 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=60.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.++|.+|+|||+||.++++.+......+++++ ..+.+..+..... . . ......+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----~~~l~~~l~~~~~-~-~-----------------~~~~~~~ 156 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----VADIMSAMKDTFS-N-S-----------------ETSEEQL 156 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----HHHHHHHHHHHHh-h-c-----------------cccHHHH
Confidence 4889999999999999999998877766788883 3344433333221 0 0 0012234
Q ss_pred HHHHhcCCCEEEEEcCCCCccc-ccchHHHhhhccC-CCCCeEEEEEecC
Q 001918 546 RKELMRNIPFLVIIDNLESEKD-WWDDKLVMDLLPR-FGGETHIIISTRL 593 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~-~~~~~~L~~~lp~-~~~gsrIIITTR~ 593 (996)
.+.+ . +.=||||||+..... .|....+..++.. ....-.+||||..
T Consensus 157 l~~l-~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 157 LNDL-S-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHh-c-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4455 3 345888999976431 1122345555532 2224568888853
No 148
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.89 E-value=0.0037 Score=68.49 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC-c--cHHHHHHHHHHHccCccC--cccCCcccccchhhhc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES-R--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQ 537 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~-~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~ 537 (996)
|+ .++|.|.+|.|||||+..++++++.+|+.++++-+.. + .+.+.+..+...-.+... .....+..-...+ .
T Consensus 69 GQ-r~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~--~ 145 (274)
T cd01133 69 GG-KIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA--R 145 (274)
T ss_pred CC-EEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH--H
Confidence 44 4899999999999999999999988886555554433 3 344444443321111000 0000000000000 1
Q ss_pred HHHHHHHHHHHHh-c-CCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELM-R-NIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~-~-~~r~LLVLDdvd~~ 565 (996)
.....-.+.++++ + ++.+|||+||+...
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122234556663 3 88999999999753
No 149
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.88 E-value=0.0022 Score=62.68 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=44.8
Q ss_pred ceeEeeccCCCccccchHHHHHHHHHHc-------CCce----------eecCccccCCCCcHHHHHHHhhcceEEEEEE
Q 001918 161 CDVFIGLHGCKPSLMRFANWLRAELEVQ-------GMSC----------FVSDRARCRNSRKHAIVERAMDISSFGVVIL 223 (996)
Q Consensus 161 ~dVFlsfrG~d~~r~~F~~hL~~~L~~~-------gI~~----------F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~ 223 (996)
|.|||||+..|- ......|.+-+... .+.. +.++......+.+...+.+.|..|...||+.
T Consensus 1 ~~vFIS~~~~d~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDDD--DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------TH--H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccCc--HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 679999999992 44666666666663 2211 1222222233457778899999999999999
Q ss_pred cCCCCcCcccHHHHHhhhcC-CceEeee
Q 001918 224 TRKSFRNPYSIEELRYFSGK-KNLVPIF 250 (996)
Q Consensus 224 S~nya~S~wCL~EL~~i~~~-~~v~PvF 250 (996)
+++-+.|+|+=.|+..-++. +.||-|-
T Consensus 79 g~~T~~s~wV~~EI~~A~~~~~~Ii~V~ 106 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALKKGKPIIGVY 106 (130)
T ss_dssp -TT----HHHHHHHHHHTTT---EEEEE
T ss_pred CCCcccCcHHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999987764 3466654
No 150
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0024 Score=69.80 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=59.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
+.++|.+|+|||.||.++++++...--.+.|+ +..+.+..|....... .....+.
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~-----~~~el~~~Lk~~~~~~--------------------~~~~~l~ 162 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFI-----TAPDLLSKLKAAFDEG--------------------RLEEKLL 162 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE-----EHHHHHHHHHHHHhcC--------------------chHHHHH
Confidence 89999999999999999999988555678888 4556666665544320 1122333
Q ss_pred HHHhcCCCEEEEEcCCCCc--ccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 547 KELMRNIPFLVIIDNLESE--KDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~--~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
+.+ .+-=||||||+-.. ..| ..+.+..++-..-.....|+||-.
T Consensus 163 ~~l--~~~dlLIiDDlG~~~~~~~-~~~~~~q~I~~r~~~~~~~~tsN~ 208 (254)
T COG1484 163 REL--KKVDLLIIDDIGYEPFSQE-EADLLFQLISRRYESRSLIITSNL 208 (254)
T ss_pred HHh--hcCCEEEEecccCccCCHH-HHHHHHHHHHHHHhhccceeecCC
Confidence 333 23348999999763 222 334444443221112223777743
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.87 E-value=0.0034 Score=71.09 Aligned_cols=101 Identities=25% Similarity=0.213 Sum_probs=59.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|.+|+|||.||.++++.+..+...+.|++ ....+..+...-. .. + .+... .
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-----~~~l~~~l~~~~~-~~----------------~-~~~~~-~ 240 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-----ADELIEILREIRF-NN----------------D-KELEE-V 240 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-----HHHHHHHHHHHHh-cc----------------c-hhHHH-H
Confidence 4899999999999999999998877666788884 3333333332100 00 0 01111 1
Q ss_pred HHHHhcCCCEEEEEcCCCCc--ccccchHHHhhhccC-CCCCeEEEEEecC
Q 001918 546 RKELMRNIPFLVIIDNLESE--KDWWDDKLVMDLLPR-FGGETHIIISTRL 593 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~--~~~~~~~~L~~~lp~-~~~gsrIIITTR~ 593 (996)
.+.+ . .-=||||||+... ..| ....|..++.. ...+..+||||..
T Consensus 241 ~~~l-~-~~DLLIIDDlG~e~~t~~-~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 241 YDLL-I-NCDLLIIDDLGTEKITEF-SKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHh-c-cCCEEEEeccCCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3334 2 2348999999543 233 23455555532 1225678999864
No 152
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.016 Score=65.52 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=90.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCcc-CcccCCcccccchhhhcHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
-..++|+.|+||+++|+.++..+--.-...- -.+... .+...+.. -..+. ....+.+... -..+.+..
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~~Cg~C---~sC~~~~~-g~HPD~~~i~p~~~~~------I~id~iR~ 94 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGD-QPCGQC---HSCHLFQA-GNHPDFHILEPIDNKD------IGVDQVRE 94 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCC---HHHHHHhc-CCCCCEEEEccccCCC------CCHHHHHH
Confidence 4789999999999999999987543211000 011111 11111110 00000 0000000000 11223344
Q ss_pred HHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHH
Q 001918 545 VRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~ 614 (996)
+.+.+. .+++=++|+|+++....- ....|.+.+-..++++.+|++|.+.. +. ....+.+.+++.++..+
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALD 173 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHH
Confidence 444441 245557889999986432 23456666644445788888887653 32 24789999999999999
Q ss_pred HHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 615 LMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 615 Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
.+...... ....+..++..++|.|+
T Consensus 174 ~L~~~~~~----~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 174 WLQAQSSA----EISEILTALRINYGRPL 198 (325)
T ss_pred HHHHHhcc----ChHHHHHHHHHcCCCHH
Confidence 99876431 22235677889999995
No 153
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.84 E-value=0.0067 Score=69.05 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=57.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC-CE-EEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY-KM-VLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~-v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|+|.+|+|||||++.+++.+..+. +. ++|+-...+ .+.+.+..+...+.......+.. . .......
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~--~-----~~~v~~~ 207 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD--E-----HIRVAEL 207 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH--H-----HHHHHHH
Confidence 479999999999999999999887654 33 244443433 67776666666554433221110 0 0012222
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
...+.+++ ..+++++||+|++...
T Consensus 208 ~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 208 VLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 33333444 4689999999999853
No 154
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.83 E-value=0.0041 Score=69.79 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=58.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.|+|..|+|||.||.++++.+..+-..+.|+. ....+..+.....-. . ....
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----~~~l~~~lk~~~~~~-----------------~----~~~~ 211 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----FPEFIRELKNSISDG-----------------S----VKEK 211 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----HHHHHHHHHHHHhcC-----------------c----HHHH
Confidence 3889999999999999999999876655567773 444444444333110 1 1122
Q ss_pred HHHHhcCCCEEEEEcCCCCc--ccccchHHH-hhhccC-CCCCeEEEEEec
Q 001918 546 RKELMRNIPFLVIIDNLESE--KDWWDDKLV-MDLLPR-FGGETHIIISTR 592 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~--~~~~~~~~L-~~~lp~-~~~gsrIIITTR 592 (996)
.+.+ .+-=||||||+... ..| ..+.+ ..++.. ...+..+||||.
T Consensus 212 l~~l--~~~dlLiIDDiG~e~~s~~-~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 212 IDAV--KEAPVLMLDDIGAEQMSSW-VRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred HHHh--cCCCEEEEecCCCccccHH-HHHHHHHHHHHHHHHCCCeEEEECC
Confidence 3334 34558999999643 333 33223 333332 123567889985
No 155
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.01 Score=69.78 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=80.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.+||++|+|||-||+++++.-.-.| |+.....+ |..-.+ ..+..+..+.
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NF-----isVKGPEL----------lNkYVG---------------ESErAVR~vF 597 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGPEL----------LNKYVG---------------ESERAVRQVF 597 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCce-----EeecCHHH----------HHHHhh---------------hHHHHHHHHH
Confidence 89999999999999999999866554 43222211 111111 1234456666
Q ss_pred HHHhcCCCEEEEEcCCCCcc-------cccchHHHhhhccC-----CCCCeEEEEEecCCCcC--------Cc-ceEEcc
Q 001918 547 KELMRNIPFLVIIDNLESEK-------DWWDDKLVMDLLPR-----FGGETHIIISTRLPRVM--------NL-EPLKLS 605 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~-------~~~~~~~L~~~lp~-----~~~gsrIIITTR~~~~~--------~~-~~~~v~ 605 (996)
.+-+...++.|.||.+|.+. .+.....+..+|-. ...|.-||-.|..+++. .. ..+-|+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 66657899999999998751 11111233333311 12367777777666651 12 688899
Q ss_pred CCCHHHHHHHHhhhcC
Q 001918 606 YLSGVEAMSLMQGSVK 621 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~ 621 (996)
..+.+|-.++|.....
T Consensus 678 lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 678 LPNAEERVAILKTITK 693 (802)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999887
No 156
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0058 Score=72.70 Aligned_cols=148 Identities=17% Similarity=0.261 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+=|.++|+||+|||++|+++++.-.-.|=.+ ..+ +.| . .|....+..+..
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsv-----kgp---EL~-------s---------------k~vGeSEr~ir~ 518 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSV-----KGP---ELF-------S---------------KYVGESERAIRE 518 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeec-----cCH---HHH-------H---------------HhcCchHHHHHH
Confidence 3489999999999999999999876665211 110 011 0 001123344455
Q ss_pred HHHHHhcCCCEEEEEcCCCCccccc-------chHHHhhhc---cCCCCC-eEEEE-EecCC-Cc----CC---c-ceEE
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWW-------DDKLVMDLL---PRFGGE-THIII-STRLP-RV----MN---L-EPLK 603 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~-------~~~~L~~~l---p~~~~g-srIII-TTR~~-~~----~~---~-~~~~ 603 (996)
+.+.-+...+.+|.||.+|....-- ....|..+| ...... ..+|| .|..+ .+ .. . .++.
T Consensus 519 iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiy 598 (693)
T KOG0730|consen 519 VFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIY 598 (693)
T ss_pred HHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEe
Confidence 5554445667888888887642110 001223333 222112 22333 33322 23 22 2 7889
Q ss_pred ccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001918 604 LSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
|+..+.+--+++|..++...|-.+.-...+|++...|.-
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYS 637 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCC
Confidence 999999999999999998655332222456777666654
No 157
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.74 E-value=0.0071 Score=63.97 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHc-cCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFL-DVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|+|++|.|||+++.+++.........++|++.+..+ ...+..++... ........ ....... .+....+.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~-~~rl~~~~~~~~~~~~~~i~---~~~~~~~-~~~~~~~~ 87 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLS-PERFKQIAEDRPERALSNFI---VFEVFDF-DEQGVAIQ 87 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCC-HHHHHHHHHhChHHHhcCEE---EEECCCH-HHHHHHHH
Confidence 4899999999999999999999877667789999886421 12233333321 00000000 0000000 12223455
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001918 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+.+.+...+.-+||+|.+...
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l 109 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTAL 109 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHH
Confidence 5555563445679999998753
No 158
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.74 E-value=0.008 Score=64.66 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.++|.|..|.|||||.+.+.+.+.+.|+.++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4899999999999999999999999998888774
No 159
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.74 E-value=0.0074 Score=64.59 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC------CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY------KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~ 538 (996)
.++.|.|.+|+|||+||.+++....... ..++|++.+..-....+..++..++....... +.-.+... .+.
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~--~~i~~~~~-~~~ 96 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVL--DNIYVARP-YNG 96 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhh--ccEEEEeC-CCH
Confidence 4899999999999999999988765555 67899987765112334444444332211000 00000000 133
Q ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCCCc
Q 001918 539 EAAICRVRKELM---RNIPFLVIIDNLESE 565 (996)
Q Consensus 539 ~~~~~~l~~~L~---~~~r~LLVLDdvd~~ 565 (996)
++....+.+.+. ..+.-|||+|.+...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 444444444432 345569999998754
No 160
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0053 Score=69.50 Aligned_cols=87 Identities=31% Similarity=0.397 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+|.|-|-||||||||..+++.++..+. .+++|..+. +..+ ..--+++|++....... -.+..++.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE-S~~Q-iklRA~RL~~~~~~l~l-----------~aEt~~e~ 159 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE-SLQQ-IKLRADRLGLPTNNLYL-----------LAETNLED 159 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc-CHHH-HHHHHHHhCCCccceEE-----------ehhcCHHH
Confidence 4899999999999999999999998877 899997654 3322 22335677765422110 12233566
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
|.+.+...++-|+|+|-+...
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred HHHHHHhcCCCEEEEecccee
Confidence 777776788999999998764
No 161
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0078 Score=70.75 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=96.8
Q ss_pred hccccchHhhhhhh------hcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHH
Q 001918 433 EMQSTEAPQRQKTK------SSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIR 506 (996)
Q Consensus 433 ~fvGR~~el~~l~~------~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~ 506 (996)
.+=|.+..++++.+ .+.-|..+. +...+=|.|+|++|+|||.||.+++.++.--| +......+-
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lG-----v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isApeiv 260 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLG-----VRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISAPEIV 260 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcC-----CCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecchhhh
Confidence 45677777777764 222233221 12334489999999999999999998875443 321111110
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcc---cc----cchHHHhhhc-
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEK---DW----WDDKLVMDLL- 578 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~---~~----~~~~~L~~~l- 578 (996)
.+ ... ..++.+..+.+.-.+..++++++|++|-+. ++ ++..-+.+++
T Consensus 261 SG-----------vSG--------------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt 315 (802)
T KOG0733|consen 261 SG-----------VSG--------------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLT 315 (802)
T ss_pred cc-----------cCc--------------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHH
Confidence 00 000 122333444443337889999999998752 11 0111222222
Q ss_pred --------cCCCCCeEEEEEecCC-CcC-------Cc-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC
Q 001918 579 --------PRFGGETHIIISTRLP-RVM-------NL-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641 (996)
Q Consensus 579 --------p~~~~gsrIIITTR~~-~~~-------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl 641 (996)
+.+|.+.-||-+|..+ .+. .. +-+.+.-.+..+-.++|...+.+......-..++|++..-|.
T Consensus 316 ~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 316 SMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGF 395 (802)
T ss_pred hhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCc
Confidence 1123344444444433 331 12 677888888877777777766522111011134666666655
Q ss_pred h----HHHHHHHHHH
Q 001918 642 T----MGLAVVGAIL 652 (996)
Q Consensus 642 P----LAL~~~gs~L 652 (996)
- .||.-.|+..
T Consensus 396 VGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 396 VGADLMALCREAAFV 410 (802)
T ss_pred cchhHHHHHHHHHHH
Confidence 3 4455555444
No 162
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.70 E-value=0.0033 Score=66.05 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH--hcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY--HQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~--~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.+|.+.|++|.|||.||.+.+.+. ..+|+.++++...-. ..+.+|...+... ++. ..+.....+.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~--------~~~~lGflpG~~~--eK~--~p~~~p~~d~l 87 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE--------AGEDLGFLPGDLE--EKM--EPYLRPIYDAL 87 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S----------TT----SS-------------TTTHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC--------CccccccCCCCHH--HHH--HHHHHHHHHHH
Confidence 479999999999999999998753 367888888853211 0112221111100 000 00000000000
Q ss_pred ------HHHHHHHh------------cC---CCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 543 ------CRVRKELM------------RN---IPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 543 ------~~l~~~L~------------~~---~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
..+...+. ++ ...+||+|.+.+. .+.++..++-..+.+|+||++--.
T Consensus 88 ~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 88 EELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp TTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 00111110 12 3468999999986 568999999888889999998644
No 163
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.69 E-value=0.0094 Score=64.34 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCccc--------ccchhhh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKS--------RIKSFEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~--------~~~~~~~ 536 (996)
.++.|+|.+|.|||+||.++++....+-..++|+..+.. ..+.+.. ...++......-..... .......
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 479999999999999999998875556678999987643 3222222 23344332110000000 0000012
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhh---ccC-CCCCeEEEEEecC
Q 001918 537 QEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDL---LPR-FGGETHIIISTRL 593 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~---lp~-~~~gsrIIITTR~ 593 (996)
+.......+.+.+...+.-++|+|.+.......+...+..+ +.. ...+..+|+|+..
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 33456666777664446678999998743221122333333 211 1124567777654
No 164
>PRK10536 hypothetical protein; Provisional
Probab=96.68 E-value=0.0099 Score=64.36 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC
Q 001918 555 FLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 555 ~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
-+||+|.+.+. ++.++..++-..+.+|+||+|--..+
T Consensus 178 ~~vIvDEaqn~----~~~~~k~~ltR~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 178 AVVILDEAQNV----TAAQMKMFLTRLGENVTVIVNGDITQ 214 (262)
T ss_pred CEEEEechhcC----CHHHHHHHHhhcCCCCEEEEeCChhh
Confidence 48999999987 55788888888788999999865433
No 165
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.0075 Score=64.64 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.++.|+|.+|.|||++|.+++.........++|++.+
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4899999999999999999999877667789999887
No 166
>PHA00729 NTP-binding motif containing protein
Probab=96.64 E-value=0.0055 Score=65.22 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|+|.+|+||||||..+++++.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999864
No 167
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.026 Score=65.14 Aligned_cols=174 Identities=11% Similarity=0.119 Sum_probs=97.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCC--EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYK--MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~--~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+-|||..|.|||.|+.++.+....... .+.++. ....+..+...+. +..+.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~-----se~f~~~~v~a~~---------------------~~~~~ 168 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT-----SEDFTNDFVKALR---------------------DNEME 168 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc-----HHHHHHHHHHHHH---------------------hhhHH
Confidence 5899999999999999999998887775 566663 2222222222221 01233
Q ss_pred HHHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccC-CCCCeEEEEEecCCCc--C-----------CcceEEccCCC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPR-FGGETHIIISTRLPRV--M-----------NLEPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~-~~~gsrIIITTR~~~~--~-----------~~~~~~v~~L~ 608 (996)
.+++.. .-=||++||++.....- ..+.+...+.. ...|..||+|++...- . ..-++++.+++
T Consensus 169 ~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd 245 (408)
T COG0593 169 KFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPD 245 (408)
T ss_pred HHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCC
Confidence 334333 22378899998753210 01233333321 1234589999876432 1 12689999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHH----HHHHHHHhCCChHHHHHHHHHHhc--CCCCHHHHHHHHhc
Q 001918 609 GVEAMSLMQGSVKDYP-ITEVDA----LRVIEEKVGRLTMGLAVVGAILSE--LPINPSRLLDTINR 668 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~----a~~iv~~lgglPLAL~~~gs~L~~--~~~s~~e~l~~L~~ 668 (996)
.+....++.+.+.... .-..++ +..+.+-..-+.=||..+..+-.. +.++.+-..+.|+.
T Consensus 246 ~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 246 DETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHH
Confidence 9999999999775222 112222 333333334445555555444332 23455544444444
No 168
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.63 E-value=0.013 Score=74.10 Aligned_cols=148 Identities=18% Similarity=0.261 Sum_probs=81.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|+|||+||+.+++.....| +.+++. .+... ..+ .....+..+
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~---i~i~~~---------~i~~~---~~g---------------~~~~~l~~l 263 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYF---ISINGP---------EIMSK---YYG---------------ESEERLREI 263 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeE---EEEecH---------HHhcc---ccc---------------HHHHHHHHH
Confidence 488999999999999999998765433 334311 00000 000 111223333
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhccCC-CCCeEEEE-EecCCC-c----C---Cc-ceEEc
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLLPRF-GGETHIII-STRLPR-V----M---NL-EPLKL 604 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~lp~~-~~gsrIII-TTR~~~-~----~---~~-~~~~v 604 (996)
.+......+.+|+||+++....- .+. .+|..++... ..+..+|| ||.... + . .. ..+.+
T Consensus 264 f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i 343 (733)
T TIGR01243 264 FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVI 343 (733)
T ss_pred HHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEe
Confidence 33333567789999999764210 000 1233333221 12334444 444332 2 1 12 56888
Q ss_pred cCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 605 SYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 605 ~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
+.++.++-.+++..+....+.........+++.+.|.--
T Consensus 344 ~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 344 RVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 889999999999877654332222235677788777653
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.62 E-value=0.0079 Score=64.41 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=79.1
Q ss_pred CccccccCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 421 EPVVWKESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 421 ~p~v~~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.|+-...+.+-..++|.+.+.+.+.++.. +...|. +..-|.|||..|.|||+|++++.+++..+-=.++-|.
T Consensus 16 ~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~---~Fl~G~----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~- 87 (249)
T PF05673_consen 16 EPIKHPDPIRLDDLIGIERQKEALIENTE---QFLQGL----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS- 87 (249)
T ss_pred EecCCCCCCCHHHhcCHHHHHHHHHHHHH---HHHcCC----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC-
Confidence 34334455667789999999888874221 111221 2234889999999999999999998776543333331
Q ss_pred cCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhcc
Q 001918 501 ESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLP 579 (996)
Q Consensus 501 ~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp 579 (996)
...+ ..+..|.+.|+ +..|++|.+||+.-...--+-..|+.+|.
T Consensus 88 -----k~~L------------------------------~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 88 -----KEDL------------------------------GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -----HHHh------------------------------ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 0111 11223334442 56889999999864322112245666553
Q ss_pred ----CCCCCeEEEEEecCCCcC
Q 001918 580 ----RFGGETHIIISTRLPRVM 597 (996)
Q Consensus 580 ----~~~~gsrIIITTR~~~~~ 597 (996)
..+....|..||-.+++.
T Consensus 133 Ggle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 133 GGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CccccCCCcEEEEEecchhhcc
Confidence 223356666677777763
No 170
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.60 E-value=0.02 Score=58.59 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
++++.|++|.||||++..++..+...-..++.++++.. .....+..++..++++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~ 57 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVP 57 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeE
Confidence 58899999999999999999988766556777776644 2333344444444443
No 171
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.024 Score=65.09 Aligned_cols=172 Identities=15% Similarity=0.185 Sum_probs=105.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCC--EEEEEeCcCc-cHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYK--MVLWVGGESR-YIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~--~v~wi~~~~~-~~~ 506 (996)
+....+||+.|+..++. .....-.....+-+=|.|-+|.|||.+...++.+...... .++++++.+- ...
T Consensus 148 ~p~~l~gRe~e~~~v~~-------F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVRE-------FFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCCccchHHHHHHHHH-------HHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 34467899999988873 1111101112234789999999999999988887766653 5689998874 666
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcC-CCEEEEEcCCCCcccccchHHHhhh--ccCCCC
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRN-IPFLVIIDNLESEKDWWDDKLVMDL--LPRFGG 583 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~r~LLVLDdvd~~~~~~~~~~L~~~--lp~~~~ 583 (996)
..|..+...+.......+ ...+....+....... ..+|||||..|.+..- +...|..+ ||+..
T Consensus 221 aiF~kI~~~~~q~~~s~~------------~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr-~~~vLy~lFewp~lp- 286 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPG------------TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR-SQTVLYTLFEWPKLP- 286 (529)
T ss_pred HHHHHHHHHHHHHhcCCc------------hhHHHHHHHHHHHhcccceEEEEechhhHHhhc-ccceeeeehhcccCC-
Confidence 677776665522211111 1234455566666333 4689999999975211 11233333 34443
Q ss_pred CeEEEEEecCCCc-----------C--C--cceEEccCCCHHHHHHHHhhhcCC
Q 001918 584 ETHIIISTRLPRV-----------M--N--LEPLKLSYLSGVEAMSLMQGSVKD 622 (996)
Q Consensus 584 gsrIIITTR~~~~-----------~--~--~~~~~v~~L~~~EA~~Lf~~~a~~ 622 (996)
++|+|+.---..+ . + ...+..++.+.++-.++|..+...
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 5666554322111 1 1 257788899999999999998863
No 172
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.047 Score=61.59 Aligned_cols=162 Identities=10% Similarity=0.027 Sum_probs=89.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCcc-CcccCCcccccchhhhcHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDV-GIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+.+.|+.|+||+++|..++..+--.-... -.+... .+-..+.. -..+. ....+.+..+ .+ ..+.+..
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C---~sC~~~~~-g~HPD~~~i~p~~~~~--~I---~vdqiR~ 95 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFC---HSCELMQS-GNHPDLHVIKPEKEGK--SI---TVEQIRQ 95 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCC---HHHHHHHc-CCCCCEEEEecCcCCC--cC---CHHHHHH
Confidence 588999999999999999998653221100 011111 01111110 00000 0000000000 00 1122334
Q ss_pred HHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHH
Q 001918 545 VRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~ 614 (996)
+.+.+. .++.=.+|+|+++....- ....|-+.+...++++.+|++|.+.. +. ....+.+++++.+++.+
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~ 174 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQ 174 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHH
Confidence 444441 244558889999986431 22456666644445777777777654 32 34789999999999999
Q ss_pred HHhhhcCCCCcccHHHHHHHHHHhCCChHHHH
Q 001918 615 LMQGSVKDYPITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 615 Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~ 646 (996)
.+...... ....++..++|.|+...
T Consensus 175 ~L~~~~~~-------~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 175 WLKGQGIT-------VPAYALKLNMGSPLKTL 199 (319)
T ss_pred HHHHcCCc-------hHHHHHHHcCCCHHHHH
Confidence 99765211 13567899999998543
No 173
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.0087 Score=67.87 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+++-|+|++|+||||||.+++......-..++||+.+.. +.. ..++.+++.....- ..+ ....++....
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s-~~~---~~a~~lGvdld~ll---i~q----p~~~Eq~l~i 129 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA-LDP---VYAKKLGVDIDNLL---VSQ----PDTGEQALEI 129 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc-hHH---HHHHHcCCCHHHeE---Eec----CCCHHHHHHH
Confidence 489999999999999999999887777778899987654 222 23556665432110 000 0134445555
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+...+.....-|||+|.|..+
T Consensus 130 ~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHHHhhcCCCCEEEEeChhhh
Confidence 555554566779999998754
No 174
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.49 E-value=0.0066 Score=68.21 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+++.|+|++|+||||||.+++......-..++||+.+.. +.. ..++.+++.....- ... ....++....
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~-~~~---~~a~~lGvd~~~l~---v~~----p~~~eq~l~~ 124 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA-LDP---VYARKLGVDIDNLL---VSQ----PDTGEQALEI 124 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch-hHH---HHHHHcCCCHHHeE---Eec----CCCHHHHHHH
Confidence 489999999999999999999887766667889976653 222 13555665432110 000 0133445555
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+...++....-|||+|.|...
T Consensus 125 ~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHHHhhccCCcEEEEcchhhh
Confidence 555554566779999998754
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.48 E-value=0.023 Score=69.62 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=38.4
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
|..-.+++|-+..+.+++. .+....-......+++|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~------~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVET------WLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHH------HHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556688888888887763 0111100011235799999999999999999998754
No 176
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.45 E-value=0.014 Score=64.15 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCC----cccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCS----DKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~----~~~~~~~~~~~~ 538 (996)
.++.|.|.+|.|||++|.+++.....+-..++|++.+.. .+.+.+..-+..++......... ..........+.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~ 116 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENV 116 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhH
Confidence 479999999999999999998876555567888987643 22223433344454432110000 000000001123
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 539 EAAICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 539 ~~~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
.+....+.....+.+.=+||+|.+..
T Consensus 117 ~~l~~~l~~~i~~~~~~~vVIDSls~ 142 (259)
T TIGR03878 117 PNLLATLAYAIKEYKVKNTVIDSITG 142 (259)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCchH
Confidence 44455555555444556899999864
No 177
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.0073 Score=67.92 Aligned_cols=90 Identities=19% Similarity=0.145 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+++-|+|++|+||||||.+++......-..++||+.+.. +.. ..++.++......- +. ...+.++....
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~-~~~---~~a~~lGvd~~~l~------v~-~p~~~eq~l~i 124 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA-LDP---VYAKKLGVDLDNLL------IS-QPDTGEQALEI 124 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc-HHH---HHHHHcCCCHHHhe------ec-CCCCHHHHHHH
Confidence 489999999999999999999887766678889987654 211 23455555432110 00 00134455555
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+...++....-|||+|.|...
T Consensus 125 ~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHHHhccCCCEEEEcchHhh
Confidence 555554566779999998753
No 178
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.43 E-value=0.011 Score=63.00 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=87.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|..+|++|.|||.+|+++++...--| +-+. -.+.+|...+ +....+..+
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~---l~vk------------at~liGehVG---------------dgar~Ihel 202 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPL---LLVK------------ATELIGEHVG---------------DGARRIHEL 202 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCce---EEec------------hHHHHHHHhh---------------hHHHHHHHH
Confidence 589999999999999999998754332 1221 1112222211 233445555
Q ss_pred HHHHhcCCCEEEEEcCCCCccc------cc-c-hHHHhhhccC-----CCCCeEEEEEecCCCcCC------c-ceEEcc
Q 001918 546 RKELMRNIPFLVIIDNLESEKD------WW-D-DKLVMDLLPR-----FGGETHIIISTRLPRVMN------L-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~------~~-~-~~~L~~~lp~-----~~~gsrIIITTR~~~~~~------~-~~~~v~ 605 (996)
.++-+...++.+.||.+|-+.- +- | .+.+..+|-. .+.|...|-.|.+..+.. . .-++..
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~ 282 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFK 282 (368)
T ss_pred HHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeee
Confidence 5555567899999999986410 00 0 1222333311 233666666676666632 2 567888
Q ss_pred CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC
Q 001918 606 YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl 641 (996)
-.+.+|-++++..++...|-.-..-.+.++...+|+
T Consensus 283 LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 283 LPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred CCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 889999999999998755422111155677766665
No 179
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.43 E-value=0.0053 Score=45.67 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhhc
Q 001918 934 VLETRAKLMLRGGQFDMGDDLIRKAVFIRTSI 965 (996)
Q Consensus 934 ~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~ 965 (996)
++.+||.+|..+|+|++|.++|+++|++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999887654
No 180
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.07 Score=60.75 Aligned_cols=85 Identities=8% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCC-CcC-----CcceEEccCCCHHHHHHHHhhhcCCCCc
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLP-RVM-----NLEPLKLSYLSGVEAMSLMQGSVKDYPI 625 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-~~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~~ 625 (996)
++.=++|+|+++....- ....|-+.+-..++++.+|.+|.+. .+. ....+.+++++.++..+.|.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--VA- 206 (342)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--CC-
Confidence 44558889999986431 2245555564444567666666554 342 24789999999999999998762 11
Q ss_pred ccHHHHHHHHHHhCCChHH
Q 001918 626 TEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 626 ~~~~~a~~iv~~lgglPLA 644 (996)
. ...++..++|.|+.
T Consensus 207 -~---~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 207 -D---ADALLAEAGGAPLA 221 (342)
T ss_pred -h---HHHHHHHcCCCHHH
Confidence 1 12357788999963
No 181
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.40 E-value=0.0088 Score=68.92 Aligned_cols=88 Identities=30% Similarity=0.349 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.++.|.|.+|+|||||+.+++..+...-..++|++.+. +..+ +..-+..++...... .-. ....++.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~q-i~~Ra~rlg~~~~~l--------~l~---~e~~le~ 149 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQ-IKLRADRLGISTENL--------YLL---AETNLED 149 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHH-HHHHHHHcCCCcccE--------EEE---ccCcHHH
Confidence 48999999999999999999998877666888997653 2322 222344555432211 000 0111344
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.+...++-+||+|.+...
T Consensus 150 I~~~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 150 ILASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred HHHHHHhcCCcEEEEcchHHh
Confidence 555554557779999998653
No 182
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.40 E-value=0.006 Score=65.40 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCccccc---chh-----h
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRI---KSF-----E 535 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~---~~~-----~ 535 (996)
.++.|.|.+|.|||+|+.+++.....+ -+.++|+..... . +.+.+-+..++.+........+-.+ ... .
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~-~-~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP-P-EELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--H-HHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC-H-HHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 479999999999999999999877666 667889976543 1 1222222233322110000000000 000 1
Q ss_pred hcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhc----cC-CCCCeEEEEEec
Q 001918 536 EQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLL----PR-FGGETHIIISTR 592 (996)
Q Consensus 536 ~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~l----p~-~~~gsrIIITTR 592 (996)
.+..+....+.+.+...+.-.+|+|.+.......++..+..++ .. ...|+-+|+|+.
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 2556677777777744455899999987662111223333322 11 113566677766
No 183
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.34 E-value=0.026 Score=57.67 Aligned_cols=127 Identities=23% Similarity=0.210 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEE---EEeCcCc-cHHHHHHHHHHHccCccCcccC---Ccccccchhhhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVL---WVGGESR-YIRQNYLNLWSFLDVDVGIENC---SDKSRIKSFEEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~---wi~~~~~-~~~~~l~~La~~L~~~~~~~~~---~~~~~~~~~~~~ 537 (996)
++|-|++..|.||||+|..++.+...+--.++ |+..... .-...+.. +++....... ............
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~----~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP----HGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh----cCcEEEECCCCCeecCCCcHHHHHH
Confidence 47888888999999999999998765544443 5554322 11122222 2222111000 000000000011
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCccc--ccchHHHhhhccCCCCCeEEEEEecCCC
Q 001918 538 EEAAICRVRKELMRNIPFLVIIDNLESEKD--WWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~--~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
..+.....++.+..+.-=|||||.+...-. +.+.+.+.+++...+.+..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 234556666666444455999999875322 2244677778766666889999999863
No 184
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.041 Score=62.37 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCCcc
Q 001918 553 IPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYPIT 626 (996)
Q Consensus 553 ~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~~~ 626 (996)
++-++|+|+++..+.- ....+.+.+.....++.+|++|.+.. +. ....+.+.+++.+++.+.+..... +
T Consensus 113 ~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~-- 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV--A-- 187 (325)
T ss_pred CceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC--C--
Confidence 3334556888876321 12344445533334576777777754 32 237899999999999998876521 1
Q ss_pred cHHHHHHHHHHhCCChHH
Q 001918 627 EVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 627 ~~~~a~~iv~~lgglPLA 644 (996)
... ..+..++|-|+.
T Consensus 188 ~~~---~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE---ERLAFHSGAPLF 202 (325)
T ss_pred cHH---HHHHHhCCChhh
Confidence 111 123567888853
No 185
>PRK14974 cell division protein FtsY; Provisional
Probab=96.32 E-value=0.038 Score=62.74 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
..+|+++|++|+||||++..+++.+..+-..+..+.++.- .....+...+..++++...... ..++...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~---------g~dp~~v 210 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKY---------GADPAAV 210 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccC---------CCCHHHH
Confidence 3589999999999999999999887765335666766532 3334566677777765421110 0122222
Q ss_pred H-HHHHHHHhcCCCEEEEEcCCCCc
Q 001918 542 I-CRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~-~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+ ..+.... ....-+||+|.+-..
T Consensus 211 ~~~ai~~~~-~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 211 AYDAIEHAK-ARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHHHHH-hCCCCEEEEECCCcc
Confidence 2 2222222 233348999998654
No 186
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.31 E-value=0.0033 Score=60.09 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|++|+||||+|+.++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.028 Score=63.42 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
.+.++|++|+||||+|.++++.+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 48999999999999999999987644
No 188
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.023 Score=65.12 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
.++|+|+|++|+||||++..++..+..+-..+.++.++.. ...+.+...+..++++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE
Confidence 3689999999999999999999987765556778877654 23334445555666553
No 189
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.022 Score=64.23 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--c----CCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCc-ccccchhhh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH--Q----RYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSD-KSRIKSFEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~----~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~-~~~~~~~~~ 536 (996)
.++-|+|++|+|||||+.+++.... . .-..++||+.+.. +. +-+..+++.++.......... ..+..+. +
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~-eRi~~~a~~~g~d~~~~l~~i~~~~~~~~-e 174 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRP-DRIRAIAERFGVDPDAVLDNILYARAYTS-E 174 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCH-HHHHHHHHHcCCChHHhcCcEEEecCCCH-H
Confidence 4889999999999999999876432 1 1247899987764 33 345566777765432100000 0000001 1
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 537 QEEAAICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
...+.+..+...+...+.-|||+|.+..
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 1223334444455344556899999874
No 190
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.23 E-value=0.014 Score=68.26 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..|.+.+|||.+|..||++++|...|+.|+.| .|.-+.+++|++++|...|++
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhH
Confidence 34555666666666666666666666666665 355555566666666666655
No 191
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.20 E-value=0.0077 Score=63.36 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCC-EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYK-MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~-~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
++|.|.|+.|.||||++..++..+..... .++.+...-+..... ......... ...+......
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~------~~~~i~q~~----------vg~~~~~~~~ 65 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES------KRSLINQRE----------VGLDTLSFEN 65 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC------ccceeeecc----------cCCCccCHHH
Confidence 47999999999999999998887765544 344443211111000 000000000 0001223455
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
.++..| +..+=+|++|.+.+. +.+...+.....|..|+.|+-.
T Consensus 66 ~i~~aL-r~~pd~ii~gEird~------e~~~~~l~~a~~G~~v~~t~Ha 108 (198)
T cd01131 66 ALKAAL-RQDPDVILVGEMRDL------ETIRLALTAAETGHLVMSTLHT 108 (198)
T ss_pred HHHHHh-cCCcCEEEEcCCCCH------HHHHHHHHHHHcCCEEEEEecC
Confidence 677777 556779999999765 3333333222224456666543
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.19 E-value=0.025 Score=71.34 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.+.++|++|+|||+||+.++..+.. ..+.+++..- .. -..+...++.+.+-.+ .+....
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d~se~-~~--~~~~~~lig~~~gyvg--------------~~~~~~ 544 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGV---HLERFDMSEY-ME--KHTVSRLIGAPPGYVG--------------FEQGGL 544 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcC---CeEEEeCchh-hh--cccHHHHhcCCCCCcc--------------cchhhH
Confidence 45889999999999999999987732 3345543221 00 0122333333322111 011223
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.++....-+|+||+++..
T Consensus 545 l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 545 LTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHHHhCCCeEEEEechhhc
Confidence 445553455679999999975
No 193
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.057 Score=64.78 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
++-|.|.|..|+|||+||+++++.+..+ +-.+-++++..-. ...+..+++.| .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~-~~~~e~iQk~l-------------------------~ 484 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD-GSSLEKIQKFL-------------------------N 484 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhcc-chhHHHHHHHH-------------------------H
Confidence 4459999999999999999999987744 3455666654321 11233333333 1
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCccc--------cc-chHHHhhhc-------cCCCCCeEEEEEecCCCc-------CCc
Q 001918 543 CRVRKELMRNIPFLVIIDNLESEKD--------WW-DDKLVMDLL-------PRFGGETHIIISTRLPRV-------MNL 599 (996)
Q Consensus 543 ~~l~~~L~~~~r~LLVLDdvd~~~~--------~~-~~~~L~~~l-------p~~~~gsrIIITTR~~~~-------~~~ 599 (996)
..+-..+ ...+-+|||||+|.+-. |- ....+..++ ...+..-.+|-|.....- ...
T Consensus 485 ~vfse~~-~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 485 NVFSEAL-WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLL 563 (952)
T ss_pred HHHHHHH-hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccc
Confidence 2223344 67899999999987421 10 011222222 111212244555544322 112
Q ss_pred --ceEEccCCCHHHHHHHHhhhcCC-CCcccHHHHHHHHHHhCC-ChHHHHHHH
Q 001918 600 --EPLKLSYLSGVEAMSLMQGSVKD-YPITEVDALRVIEEKVGR-LTMGLAVVG 649 (996)
Q Consensus 600 --~~~~v~~L~~~EA~~Lf~~~a~~-~~~~~~~~a~~iv~~lgg-lPLAL~~~g 649 (996)
.+..++.+...+-.++|+..... ....-.+...-+..+++| .|.-|.+.-
T Consensus 564 Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 564 FQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred eEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 57888999988888888776542 111112223336666665 465555543
No 194
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.19 E-value=0.021 Score=70.73 Aligned_cols=145 Identities=14% Similarity=0.242 Sum_probs=79.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.|+|++|.|||++|+.++.+....| +.+++. .+... ..+. .. ..+..+.
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~f---~~is~~--~~~~~------~~g~------------------~~-~~~~~~f 237 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGS--DFVEM------FVGV------------------GA-SRVRDMF 237 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCE---EEEehH--HhHHh------hhcc------------------cH-HHHHHHH
Confidence 89999999999999999988765443 233211 11000 0110 00 1112222
Q ss_pred HHHhcCCCEEEEEcCCCCccccc----------chHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ceE
Q 001918 547 KELMRNIPFLVIIDNLESEKDWW----------DDKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~----------~~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
+......+++|+||++|....-- ....+..++ ..+ ..+.-||.||..+... .. ..+
T Consensus 238 ~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i 317 (644)
T PRK10733 238 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 317 (644)
T ss_pred HHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEE
Confidence 22225678999999998752100 001223332 111 1244555577665431 12 678
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC
Q 001918 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl 641 (996)
.++..+.++-.++|..+....+....-....+++.+.|.
T Consensus 318 ~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~ 356 (644)
T PRK10733 318 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGF 356 (644)
T ss_pred EcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCC
Confidence 899999999999999888644321111133466666553
No 195
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.18 E-value=0.022 Score=60.69 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.|.|.+|+||||+|.+++.....+-..++|++.+..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 489999999999999999999987666667888976543
No 196
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.027 Score=62.61 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC-C-CEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQR-Y-KMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F-~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
.++++|+|++|+||||++..++..+..+ - ..+..|..+.. .....+...+..++++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~ 254 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV 254 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce
Confidence 3589999999999999999999887654 2 57888887753 23344555566666554
No 197
>PRK08118 topology modulation protein; Reviewed
Probab=96.16 E-value=0.006 Score=62.34 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC---CCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR---YKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~---F~~v~wi 498 (996)
.|.|+|++|.||||||+.++.++.-. |+.++|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 38999999999999999999986543 5556653
No 198
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.03 Score=63.91 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHH
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 540 (996)
+..+++|+|+.|+||||++..++..+..+-..+.+++++.. .....+...++.++++.... .++.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~------------~dp~d 272 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA------------TSPAE 272 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec------------CCHHH
Confidence 34689999999999999999999877655567888988764 23455666677776653211 13344
Q ss_pred HHHHHHHHHh-cCCCEEEEEcCCCC
Q 001918 541 AICRVRKELM-RNIPFLVIIDNLES 564 (996)
Q Consensus 541 ~~~~l~~~L~-~~~r~LLVLDdvd~ 564 (996)
....+ +.+. ....-+|++|-+-.
T Consensus 273 L~~al-~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 273 LEEAV-QYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHH-HHHHhcCCCCEEEEECCCC
Confidence 43333 3331 24557888898865
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.15 E-value=0.039 Score=56.10 Aligned_cols=132 Identities=19% Similarity=0.102 Sum_probs=63.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.++|+.|+||+++|..++..+-..-...- .+.... ....+...-..+..........+ . -..+.+..+
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--~c~~c~---~c~~~~~~~~~d~~~~~~~~~~~--~---i~i~~ir~i 90 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED--PCGECR---SCRRIEEGNHPDFIIIKPDKKKK--S---IKIDQIREI 90 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----SSSH---HHHHHHTT-CTTEEEEETTTSSS--S---BSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCCH---HHHHHHhccCcceEEEecccccc--h---hhHHHHHHH
Confidence 5789999999999999999998644321000 111110 11111110000000000000000 0 012334455
Q ss_pred HHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc-C-----CcceEEccCCC
Q 001918 546 RKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV-M-----NLEPLKLSYLS 608 (996)
Q Consensus 546 ~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~-~-----~~~~~~v~~L~ 608 (996)
.+++. .++.=++|+||++.+..- ....|.+.+-....++.+|++|.+..- . +...+.+++|+
T Consensus 91 ~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 91 IEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred HHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 55552 245668999999986321 224556666544468999999988653 2 23667776654
No 200
>PRK04132 replication factor C small subunit; Provisional
Probab=96.14 E-value=0.051 Score=68.36 Aligned_cols=146 Identities=10% Similarity=0.060 Sum_probs=89.6
Q ss_pred EEc--CCCCChhHHHHHHHHHHhc-CC-CEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 469 VTG--DSGIGKTELLLEFAYRYHQ-RY-KMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 469 I~G--~gGIGKTtLA~~~~~~~~~-~F-~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
+.| |.++||||+|..+++++-. .+ ..++-+++.+. .+. .+..+.+.+...
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~------------------------ 623 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVKEFART------------------------ 623 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhc------------------------
Confidence 347 7899999999999998633 33 25677776653 221 111111111000
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHh
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQ 617 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~ 617 (996)
.-+...+.-++|||++|.+..- ....|...+-.....+++|++|.+.. +. .+..+++++++.++-.+.+.
T Consensus 624 ---~~~~~~~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 624 ---KPIGGASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ---CCcCCCCCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 0000124579999999987421 22456666654445677777777653 32 24789999999999998888
Q ss_pred hhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 618 GSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 618 ~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
+.+.... .-..+.+..|++.++|-+-
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 7664211 1235567889999988763
No 201
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.11 E-value=0.026 Score=63.87 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC------CEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhh-h
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY------KMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFE-E 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~-~ 536 (996)
.++-|+|++|+|||+++.+++....... ..++||+.+.. .. +.+.++++.++....... ....-+.... +
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~-~rl~~~~~~~g~~~~~~l-~~i~~~~~~~~~ 180 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP-ERIEQMAEALGLDPDEVL-DNIHVARAYNSD 180 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCH-HHHHHHHHHcCCChHhhh-ccEEEEeCCCHH
Confidence 4789999999999999999998754321 37999998764 33 344555555554321100 0000000000 0
Q ss_pred cHHHHHHHHHHHHhc-CCCEEEEEcCCCC
Q 001918 537 QEEAAICRVRKELMR-NIPFLVIIDNLES 564 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~-~~r~LLVLDdvd~ 564 (996)
.....+..+...+.. .+--|||+|-+..
T Consensus 181 ~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 181 HQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 112334455555533 3344899999875
No 202
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.09 E-value=0.035 Score=59.84 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDV 518 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~ 518 (996)
.+++|.|.+|.||||||.+++.....+-..++++.... +..+.+..+ ..++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~-~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL-TTTEFIKQM-MSLGY 76 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHH-HHhCC
Confidence 37999999999999999988887654445677776433 333333333 34443
No 203
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.056 Score=63.08 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=70.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
++.|.|+-++||||+++.+....... +++++.... .....+ .+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l-----------------------------~d~~~~ 86 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL-----------------------------LDLLRA 86 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH-----------------------------HHHHHH
Confidence 79999999999999996666555444 455532211 000000 011111
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc---------CC-cceEEccCCCHHHHHH
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV---------MN-LEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~---------~~-~~~~~v~~L~~~EA~~ 614 (996)
+...- ..++.+|+||.|.....|+ ..|..+.. .++. +|+||+-+..+ ++ ...+++-||+..|=+.
T Consensus 87 ~~~~~-~~~~~yifLDEIq~v~~W~--~~lk~l~d-~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 87 YIELK-EREKSYIFLDEIQNVPDWE--RALKYLYD-RGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred HHHhh-ccCCceEEEecccCchhHH--HHHHHHHc-cccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 11111 2277899999999998882 23444443 3333 78888877654 11 2689999999999877
Q ss_pred HHh
Q 001918 615 LMQ 617 (996)
Q Consensus 615 Lf~ 617 (996)
+..
T Consensus 162 ~~~ 164 (398)
T COG1373 162 LKG 164 (398)
T ss_pred hcc
Confidence 654
No 204
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.08 E-value=0.03 Score=65.76 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
..+|.++|++|+||||+|..++..+..+-..+..++++.. ...+.+..++..++++...... ..+....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~---------~~d~~~i 165 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD---------NKDAVEI 165 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCC---------ccCHHHH
Confidence 3589999999999999999999988766446777776654 3345566677777765422110 0122333
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCC
Q 001918 542 ICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
+....+++ ... -+||+|..-.
T Consensus 166 ~~~al~~~-~~~-DvVIIDTAGr 186 (437)
T PRK00771 166 AKEGLEKF-KKA-DVIIVDTAGR 186 (437)
T ss_pred HHHHHHHh-hcC-CEEEEECCCc
Confidence 33333343 233 6788898854
No 205
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.08 E-value=0.023 Score=72.00 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.++.++|++|+|||++|+.+++.+...|
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3799999999999999999999886655
No 206
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.00 E-value=0.044 Score=60.62 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
..+|+++|++|+||||++..++..+...-..+.+++++.- ...+.+...++..++..-.... ..++...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~---------~~dp~~~ 142 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKE---------GADPAAV 142 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCC---------CCCHHHH
Confidence 3589999999999999999999988766567888887753 2234555566666654311110 0122222
Q ss_pred -HHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 542 -ICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 -~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
...+.... ....-++|+|-.-..
T Consensus 143 ~~~~l~~~~-~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 143 AFDAIQKAK-ARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHHHH-HCCCCEEEEeCCCCC
Confidence 23343333 455568888987653
No 207
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.026 Score=64.84 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCc--cHHHHHHHHHHHccCccC
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESR--YIRQNYLNLWSFLDVDVG 521 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~--~~~~~l~~La~~L~~~~~ 521 (996)
.++++++|+.|+||||++..++.++..++ ..+.++..+.- ...+.+..+++.++++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~ 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE
Confidence 35899999999999999999999865443 46778876653 445667777788877653
No 208
>PRK13695 putative NTPase; Provisional
Probab=95.97 E-value=0.036 Score=56.84 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=25.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEE
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWV 498 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi 498 (996)
|+|.|.+|+|||||+..+++.+.. .+...-|+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 899999999999999999887663 34434354
No 209
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.037 Score=64.92 Aligned_cols=92 Identities=20% Similarity=0.095 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 540 (996)
..+|.++|++|+||||++..++..+..+ -..+..|+++.. .....+..++...+++.-.... ..++.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~---------~~dp~~ 170 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGD---------GQDPVD 170 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCC---------CCCHHH
Confidence 3589999999999999999999988776 456788887754 3344555667777665321110 013344
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 541 AICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
......+.......-++|+|-.-.
T Consensus 171 i~~~a~~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 171 IAKAALEEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCC
Confidence 443333333233445888888764
No 210
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.91 E-value=0.035 Score=60.89 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--cC----CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCC-cccccchhhhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH--QR----YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCS-DKSRIKSFEEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~~----F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~-~~~~~~~~~~~ 537 (996)
.|+=|+|.+|+|||+|+.+++-... .. -..++||+.+..-..+-+.++++..+......... ......+. ++
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~-~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDL-EE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSH-HH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCH-HH
Confidence 4889999999999999999886532 22 23799999777623344556666554322100000 00001111 12
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
..+.+..+...+...+--|||+|.+...
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred HHHHHHHHHhhccccceEEEEecchHHH
Confidence 2333444444554455569999999753
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.065 Score=62.06 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhc----CCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQ----RYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQ 537 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~----~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~ 537 (996)
.++|+++|+.|+||||.+..++.++.. +-..+..+.++.- .....+..+++.++++..... +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~------------~ 241 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE------------S 241 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC------------c
Confidence 358999999999999999999987653 2346777877653 333447777777777643211 2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
..+....+ ..+ ...-+||+|-+...
T Consensus 242 ~~~l~~~L-~~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 242 FKDLKEEI-TQS--KDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHHHH-HHh--CCCCEEEEcCCCCC
Confidence 22222222 223 45678889998654
No 212
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.032 Score=57.13 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+++|.|..|.|||||.+.++.... ...+.++++....... ....+...++...+........-..+.....+...-.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDL-DLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhc-CHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 3799999999999999999987543 3456677754422100 0111222333221110000000000000011112223
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
+...| ..++-+|+||+-..--+......+.+++.....+..||++|.+...
T Consensus 107 la~al-~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 107 IARAL-LRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred HHHHH-hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 44444 4677899999876543322234555555432235678888877543
No 213
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.86 E-value=0.013 Score=60.88 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc--CC--------CEEEEEeCcCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ--RY--------KMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~--~F--------~~v~wi~~~~~ 503 (996)
++.|.|++|+|||+++.+++..+.. .| ..++|++.+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7899999999999999999997664 12 37899987765
No 214
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.84 E-value=0.028 Score=60.21 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.|.|.+|+|||++|.+++.....+-..++|++.+..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 479999999999999999999876555567888876653
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.83 E-value=0.02 Score=66.82 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=30.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc--CCCEEEEEeCcCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ--RYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~--~F~~v~wi~~~~~ 503 (996)
-|.++|++|+|||++|+.+++.+.. .++.+.|+.....
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHps 235 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQS 235 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccc
Confidence 4889999999999999999998754 4567778865544
No 216
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.83 E-value=0.069 Score=58.78 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
-|.|.|++|+|||+||+.++..+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998653
No 217
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.81 E-value=0.04 Score=62.20 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC------CCEEEEEeCcCc-cHHHHHHHHHHHccC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR------YKMVLWVGGESR-YIRQNYLNLWSFLDV 518 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~------F~~v~wi~~~~~-~~~~~l~~La~~L~~ 518 (996)
.++-|+|.+|+||||++.+++...... -..++||+.+.. .. +.+.+++..++.
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~-~rl~~~~~~~gl 155 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRP-ERIMQMAEARGL 155 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCH-HHHHHHHHHcCC
Confidence 478999999999999999998875421 127999998765 33 334455555544
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.80 E-value=0.27 Score=59.42 Aligned_cols=137 Identities=14% Similarity=0.177 Sum_probs=84.3
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHh--------cCCCEEEEEeCcCc-
Q 001918 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYH--------QRYKMVLWVGGESR- 503 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~--------~~F~~v~wi~~~~~- 503 (996)
.+.+|+.|..++.+-.... + ......+.+=|.|.+|.|||..+..+.+.+. ..|+ .+.|++-.-
T Consensus 397 sLpcRe~E~~~I~~f~~~~--i----~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSF--I----SDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhh--c----CCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeec
Confidence 4566777777766300000 0 0001223688999999999999999999654 1243 445665544
Q ss_pred cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhcc
Q 001918 504 YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLP 579 (996)
Q Consensus 504 ~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp 579 (996)
...+.|..|...|..... .....++.+..++. +.++.+|++|++|.+-.- ..+.|..++.
T Consensus 470 ~~~~~Y~~I~~~lsg~~~---------------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr-~QdVlYn~fd 533 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERV---------------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR-SQDVLYNIFD 533 (767)
T ss_pred CHHHHHHHHHHhcccCcc---------------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc-cHHHHHHHhc
Confidence 778888888887754321 23345666666663 356688889999865210 1366777776
Q ss_pred CC-CCCeEEEEEec
Q 001918 580 RF-GGETHIIISTR 592 (996)
Q Consensus 580 ~~-~~gsrIIITTR 592 (996)
|. .++++++|.+=
T Consensus 534 Wpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 534 WPTLKNSKLVVIAI 547 (767)
T ss_pred CCcCCCCceEEEEe
Confidence 62 34777766543
No 219
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.80 E-value=0.026 Score=58.18 Aligned_cols=127 Identities=17% Similarity=0.087 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCccc---c-cchhhhcHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKS---R-IKSFEEQEEA 540 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~---~-~~~~~~~~~~ 540 (996)
.+++|.|..|.|||||++.++-... ...+.++++.... ......+...++...+........ . ..... ..+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~--~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS-~G~~ 104 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPV--SDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS-GGER 104 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEH--HHHHHHHHhhEEEEccCCeeecccHHHhhcccCC-HHHH
Confidence 3799999999999999999887543 3356677764422 111112233333221110000000 0 00010 1112
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 541 AICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
..-.+.+.| -.++=+|+||....--+....+.+.+++.....+..||++|.+...
T Consensus 105 qrv~laral-~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 105 QRLALARIL-LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 222333444 4677788999887643322234444444322235778888877554
No 220
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.80 E-value=0.03 Score=62.85 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
++|-|+|+.|+||||||..+..+.+..-..++||+.+.. +. ...+..+|++....- ..+ .+..++.+..
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~-ld---~~~a~~lGvdl~rll---v~~----P~~~E~al~~ 122 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHA-LD---PEYAESLGVDLDRLL---VVQ----PDTGEQALWI 122 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS-------HHHHHHTT--GGGEE---EEE-----SSHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCccc-ch---hhHHHhcCccccceE---Eec----CCcHHHHHHH
Confidence 589999999999999999999888777778999987654 21 133556666543211 000 1234555666
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+...++.+.--++|+|-|..+
T Consensus 123 ~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHhhcccccEEEEecCccc
Confidence 666664555568999998764
No 221
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.79 E-value=0.045 Score=62.31 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--cC----CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchh-hhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH--QR----YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSF-EEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~~----F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~-~~~ 537 (996)
.++-|+|.+|+|||||+.+++-... .. -..++||+.+..-..+-+..+++.++....... .++... ..+
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l----~~I~~~~~~~ 202 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVL----DNIIYARAYT 202 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhc----CeEEEecCCC
Confidence 4788999999999999999875432 11 247899987765123445566777766532110 001000 012
Q ss_pred HHH---HHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 538 EEA---AICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 538 ~~~---~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
.+. .+..+...+...+--|||+|.+..
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 222 233333344334456889999874
No 222
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.77 E-value=0.05 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|.++|++|.||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999887654
No 223
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.76 E-value=0.029 Score=71.95 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=40.7
Q ss_pred hhccccchHhhhhhhhcCC-CCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 432 IEMQSTEAPQRQKTKSSGR-YPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~-~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
..++|.+..+..+.+...+ ...+.... .....+.+.|++|+|||++|+.++..+...-...+.+++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~---~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN---RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC---CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 3577777777777641100 00000000 1234688999999999999999998775544455556543
No 224
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.73 E-value=0.012 Score=59.29 Aligned_cols=35 Identities=34% Similarity=0.392 Sum_probs=31.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
+|-|+|++|.||||||+++..++......+.+++.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 79999999999999999999999998888999964
No 225
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.73 E-value=0.026 Score=57.32 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+++|.|..|.|||||.+.++-.. ....+.++++..............+.++...+ .. ..+...-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------LS-~G~~qrl~ 92 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAMVYQ------------LS-VGERQMVE 92 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEEEEe------------cC-HHHHHHHH
Confidence 379999999999999999987643 34567777765432100000111112222111 00 11122233
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCC
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPR 595 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~ 595 (996)
+.+.| -.++-+|+||+...--+......+.+++... ..+..||++|.+..
T Consensus 93 laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 93 IARAL-ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHH-hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34444 4667788889877543322234555554322 23567888888754
No 226
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.72 E-value=0.069 Score=57.32 Aligned_cols=38 Identities=37% Similarity=0.502 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+++|.|.+|.|||+||.+++.....+-..++|+....
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 47999999999999999998876555567889998654
No 227
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.013 Score=60.30 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+|.|.|++|.||||+|+.++.++...+..+++++
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 7999999999999999999999988888888885
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.70 E-value=0.048 Score=63.65 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
..+|+++|++|+||||++..++..++.+-..++.++++.. .....+..++...+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 3589999999999999999999887766557788877653 3334444455555554
No 229
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.69 E-value=0.025 Score=66.91 Aligned_cols=88 Identities=27% Similarity=0.326 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.++.|.|.+|+|||||+.+++.....+-..++|++.+. +..+ +..-+..++....... +. ...+ ...
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~q-i~~ra~rlg~~~~~l~------~~-~e~~----l~~ 147 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQ-IKLRAERLGLPSDNLY------LL-AETN----LEA 147 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHH-HHHHHHHcCCChhcEE------Ee-CCCC----HHH
Confidence 48999999999999999999998765555788997653 2322 2222455655322100 00 0012 234
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.+...+.-+||+|.+...
T Consensus 148 i~~~i~~~~~~lVVIDSIq~l 168 (446)
T PRK11823 148 ILATIEEEKPDLVVIDSIQTM 168 (446)
T ss_pred HHHHHHhhCCCEEEEechhhh
Confidence 444443456679999998653
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.14 Score=59.57 Aligned_cols=124 Identities=19% Similarity=0.312 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.-|.+.|++|.|||+||..++. ...|+.+=-++.+ . ..|+ +..+-...
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSpe-----~-------miG~------------------sEsaKc~~ 586 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISPE-----D-------MIGL------------------SESAKCAH 586 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeChH-----H-------ccCc------------------cHHHHHHH
Confidence 3589999999999999999875 4678855555311 1 1111 12233344
Q ss_pred HHHHHh---cCCCEEEEEcCCCCccccc------chHHHhh---hc---cCCCCCeEEEEEecCCCcC------Cc--ce
Q 001918 545 VRKELM---RNIPFLVIIDNLESEKDWW------DDKLVMD---LL---PRFGGETHIIISTRLPRVM------NL--EP 601 (996)
Q Consensus 545 l~~~L~---~~~r~LLVLDdvd~~~~~~------~~~~L~~---~l---p~~~~gsrIIITTR~~~~~------~~--~~ 601 (996)
+++.++ +..--.||+||++.+-+|. ....|+. ++ |..|..--|+-||-...+. .+ ..
T Consensus 587 i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~ 666 (744)
T KOG0741|consen 587 IKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSST 666 (744)
T ss_pred HHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhe
Confidence 444442 4555789999999887763 1122222 23 2222223333455544442 22 68
Q ss_pred EEccCCCH-HHHHHHHhhhc
Q 001918 602 LKLSYLSG-VEAMSLMQGSV 620 (996)
Q Consensus 602 ~~v~~L~~-~EA~~Lf~~~a 620 (996)
|.|+.++. ++..+.++..-
T Consensus 667 i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 667 IHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred eecCccCchHHHHHHHHHcc
Confidence 99999987 77888877654
No 231
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.67 E-value=0.033 Score=71.09 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+++.++|++|+|||.||+.++..+.......+=+++.. . ..-....+.+|.+.+-.+. +...
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse--~-~~~~~~~~l~g~~~gyvg~--------------~~~g 658 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSE--F-QEAHTVSRLKGSPPGYVGY--------------GEGG 658 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH--h-hhhhhhccccCCCCCcccc--------------cccc
Confidence 357899999999999999999988755444333332111 0 0111223334433221110 0012
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001918 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+.+.+++...-+|+||+++..
T Consensus 659 ~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 659 VLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hHHHHHHhCCCcEEEEechhhc
Confidence 3445554566679999999875
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.044 Score=66.00 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=82.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.++|++|.|||.||+++++.....|-.+-.-. -+.+.+| ..+..+..+
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~-----------l~sk~vG-------------------esek~ir~~ 327 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE-----------LLSKWVG-------------------ESEKNIREL 327 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH-----------Hhccccc-------------------hHHHHHHHH
Confidence 6899999999999999999996555543221110 0011111 122233333
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccc-------hHHHhhhc---cC--CCCCeEEEEEecCCCcC--------Cc-ceEEc
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWWD-------DKLVMDLL---PR--FGGETHIIISTRLPRVM--------NL-EPLKL 604 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~-------~~~L~~~l---p~--~~~gsrIIITTR~~~~~--------~~-~~~~v 604 (996)
...-.+..++.|.+|.+|.....-+ ...+..++ .. ...+..||-||-.+... .. ..+.+
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v 407 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeec
Confidence 3333368899999999998643321 12233332 11 11234455555554432 22 68999
Q ss_pred cCCCHHHHHHHHhhhcCCCCc--ccHHHHHHHHHHhCC
Q 001918 605 SYLSGVEAMSLMQGSVKDYPI--TEVDALRVIEEKVGR 640 (996)
Q Consensus 605 ~~L~~~EA~~Lf~~~a~~~~~--~~~~~a~~iv~~lgg 640 (996)
+..+.++..++|..+...... ...-..+.+++...|
T Consensus 408 ~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 408 PLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred CCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 999999999999999873221 122224455554444
No 233
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.66 E-value=0.033 Score=66.85 Aligned_cols=99 Identities=20% Similarity=0.132 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccch---hhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKS---FEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~---~~~~~~~~ 541 (996)
.++.|.|++|+|||||+.++++....+-+.++++..+. +..+...+ ++.++++........+-.+.. .....++.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE-s~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEE-SRAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC-CHHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 48999999999999999999998877767788886553 33333322 455555432100000000000 01134567
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+..+++.+...++-+||+|.+...
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHH
Confidence 788888885567778999998754
No 234
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.039 Score=58.80 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|++|.|||-+|+++++|. ..|||......+. ++. ..++..++
T Consensus 213 gvllygppgtgktl~aravanrt-----dacfirvigselv------qky----------------------vgegarmv 259 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGSELV------QKY----------------------VGEGARMV 259 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc-----CceEEeehhHHHH------HHH----------------------hhhhHHHH
Confidence 38899999999999999999874 3567753221111 111 22445566
Q ss_pred HHHH---hcCCCEEEEEcCCCCc
Q 001918 546 RKEL---MRNIPFLVIIDNLESE 565 (996)
Q Consensus 546 ~~~L---~~~~r~LLVLDdvd~~ 565 (996)
++.+ +..+-++|.||.+|..
T Consensus 260 relf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 260 RELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred HHHHHHhcccceEEEEeeccccc
Confidence 6655 2355578888998864
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.64 E-value=0.059 Score=63.37 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--cCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH--QRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 540 (996)
++++++|++|+||||++..++..+. .....+.+|+++.. .....+...++.++++..... +..+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~------------~~~~ 289 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY------------DPKE 289 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC------------CHHh
Confidence 5899999999999999999998876 44567888887654 223445555666666542211 2223
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCC
Q 001918 541 AICRVRKELMRNIPFLVIIDNLE 563 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd 563 (996)
....+. .+ ...-+||+|..-
T Consensus 290 l~~~l~-~~--~~~DlVlIDt~G 309 (424)
T PRK05703 290 LAKALE-QL--RDCDVILIDTAG 309 (424)
T ss_pred HHHHHH-Hh--CCCCEEEEeCCC
Confidence 333332 23 345788899764
No 236
>PRK04328 hypothetical protein; Provisional
Probab=95.63 E-value=0.046 Score=59.71 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcc------------c-----CCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIE------------N-----CSD 527 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~------------~-----~~~ 527 (996)
.++.|.|.+|.|||+||.+++.....+-..++|++.+.. ..+ +...+..++.+.... . ...
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~-~~~-i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~~ 101 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH-PVQ-VRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAAK 101 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC-HHH-HHHHHHHcCCCHHHHhhcCCEEEEeccccccccccc
Confidence 479999999999999999998876555677888876543 222 333334444321100 0 000
Q ss_pred cccc-chhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 528 KSRI-KSFEEQEEAAICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 528 ~~~~-~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.... .....+..+....+.+.+...+.-++|+|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l 140 (249)
T PRK04328 102 REKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTL 140 (249)
T ss_pred cccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHh
Confidence 0000 0001234455666666664445568999998653
No 237
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.63 E-value=0.044 Score=57.59 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.++++|.|.+|.|||++...+...+...-..++++.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 357999999999999999998887776544566664
No 238
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.014 Score=58.24 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CC-EEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-YK-MVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~-~v~wi 498 (996)
-|+|+||+|+||||+++.+++.++.+ |. +-||.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 38999999999999999999998877 75 33444
No 239
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.62 E-value=0.091 Score=54.55 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEE---EEeCcCc-cHHHHHHHHHHHccCccCc--cc-CCcccccchhhhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVL---WVGGESR-YIRQNYLNLWSFLDVDVGI--EN-CSDKSRIKSFEEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~---wi~~~~~-~~~~~l~~La~~L~~~~~~--~~-~~~~~~~~~~~~~ 537 (996)
+.|.|+|..|-||||+|...+.|...+--.+. |+..... .-...+..+ -++.... .. .............
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccCCCcHHHHHH
Confidence 47999999999999999999998766544344 5543322 111222111 1111110 00 0000000000012
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCccc--ccchHHHhhhccCCCCCeEEEEEecCCC
Q 001918 538 EEAAICRVRKELMRNIPFLVIIDNLESEKD--WWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~--~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
........++.+..+.-=|||||.+...-. +.+.+.+.+++...+.+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 233455566666344556999999876422 2244677777766666889999999853
No 240
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.054 Score=65.42 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
++++++|+||+|||.|++.+|.-+...|-.+. +.+.. +-+..-|.-..-.+ .-+-..++.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvr--------DEAEIRGHRRTYIG-----------amPGrIiQ~ 410 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVR--------DEAEIRGHRRTYIG-----------AMPGKIIQG 410 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccc--------cHHHhccccccccc-----------cCChHHHHH
Confidence 59999999999999999999999888873221 21111 11111111100000 011122333
Q ss_pred HHHHHhcCCCEEEEEcCCCCccccc------------chHHHhhhcc-----CCCCCeE-EEEEecCC-C-cC-----Cc
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWW------------DDKLVMDLLP-----RFGGETH-IIISTRLP-R-VM-----NL 599 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~------------~~~~L~~~lp-----~~~~gsr-IIITTR~~-~-~~-----~~ 599 (996)
+++. ..+.-|++||.+|....-+ |++|=..|.. .+. =|. +.|||-|. . +. +.
T Consensus 411 mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD-LS~VmFiaTANsl~tIP~PLlDRM 487 (782)
T COG0466 411 MKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD-LSKVMFIATANSLDTIPAPLLDRM 487 (782)
T ss_pred HHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc-hhheEEEeecCccccCChHHhcce
Confidence 3332 4566789999999864321 3333333321 112 233 34455543 2 22 34
Q ss_pred ceEEccCCCHHHHHHHHhhhcC
Q 001918 600 EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 600 ~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
.++++.+.+.+|-+++-..++-
T Consensus 488 EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 488 EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eeeeecCCChHHHHHHHHHhcc
Confidence 8999999999999999888863
No 241
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.036 Score=56.82 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccC-Ccccccchh-hhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENC-SDKSRIKSF-EEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~-~~~~~~~~~-~~~~~~~ 541 (996)
.+++|.|..|.|||||.+.++-.+. ...+.++++.... ... ..+...++...+.... ....-..+. ....+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 3799999999999999999876543 3567777765432 111 1222233322211100 000000000 0011122
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCCc
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPRV 596 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~~ 596 (996)
.-.+...| ..++-+|+||+-..--+......+.+++... ..|..|||+|.+...
T Consensus 103 rv~laral-~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 103 RLALAQAL-LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHH-HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 22344455 5777889999987654332334555554322 125678888887653
No 242
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.60 E-value=0.081 Score=57.31 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=37.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc------------CCCEEEEEeCcCc--cHHHHHHHHHHHcc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ------------RYKMVLWVGGESR--YIRQNYLNLWSFLD 517 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~------------~F~~v~wi~~~~~--~~~~~l~~La~~L~ 517 (996)
+..|+|+||+|||+||..++..+.. .=..+++++++.. .+..-+..+...++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~ 68 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLE 68 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcC
Confidence 5689999999999999999987542 1125778887765 45555666655543
No 243
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.59 E-value=0.057 Score=59.30 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+++.|.|.+|.|||+++.+++++.......++||..+..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 489999999999999999999998888999999987654
No 244
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.59 E-value=0.04 Score=56.52 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+++|.|..|.|||||.+.++-... ...+.++++.... ... ...+...++...+........-..+.....+...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWD--PNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCC--HHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 3799999999999999999886543 3456666654322 110 11122233222111100000000000001112223
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCCc
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPRV 596 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~~ 596 (996)
.+.+.| -.++=+|+||+...--+......+.+++... ..|..||++|.+...
T Consensus 106 ~la~al-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 106 GLARAL-YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HHHHHH-hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 344444 4566688999877543322234555554321 235678888877543
No 245
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.082 Score=57.40 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=44.5
Q ss_pred eEEEEEecCCCcCC-----c-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001918 585 THIIISTRLPRVMN-----L-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 585 srIIITTR~~~~~~-----~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
+-|=-|||--.+.+ . -+.+++..+.+|-.++..+.+.... .-+.+.+.+|+++..|-|-
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 44556888766633 2 5788999999999999999886333 2355668899999999993
No 246
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.58 E-value=0.073 Score=62.41 Aligned_cols=92 Identities=21% Similarity=0.078 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 540 (996)
..++.++|++|+||||+|..++..+.. .-..+..++++.. .....+..++..++++...... ..++.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~---------~~~P~~ 169 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK---------GQSPVE 169 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCC---------CCCHHH
Confidence 358999999999999999999988753 3346777877754 3345566667777665322110 013334
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 541 AICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
......+.+.....-++|+|-.-.
T Consensus 170 i~~~al~~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 170 IARRALEYAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCc
Confidence 433333334233444888888764
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.041 Score=56.70 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccc-hh---hhcHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIK-SF---EEQEE 539 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~-~~---~~~~~ 539 (996)
.+++|.|..|.|||||++.++-.+ ....+.+.++.... ........+...+....+.........+. +. ....+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~ 105 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQ 105 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHH
Confidence 379999999999999999987543 34567777765432 11100112222232221110000000000 00 00112
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CC-CeEEEEEecCCCc
Q 001918 540 AAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GG-ETHIIISTRLPRV 596 (996)
Q Consensus 540 ~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~-gsrIIITTR~~~~ 596 (996)
...-.+...| ...+=++|||.-..--+......+.+++... .. +..||++|.+...
T Consensus 106 ~qr~~la~al-~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 106 QQRVALARAL-AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred HHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2223334444 4677788899876543322234455544321 11 4678888877543
No 248
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.55 E-value=0.027 Score=66.71 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.++.|.|.+|+|||||+.+++.....+-..++|++.+. +..+. ..-+..++....... +.. ..+ .+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi-~~ra~rlg~~~~~l~------~~~-e~~----~~~ 161 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQI-KMRAIRLGLPEPNLY------VLS-ETN----WEQ 161 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHH-HHHHHHcCCChHHeE------EcC-CCC----HHH
Confidence 48999999999999999999988766545688997653 33222 222334544321100 000 012 234
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.+...+.-+||+|.+...
T Consensus 162 I~~~i~~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 162 ICANIEEENPQACVIDSIQTL 182 (454)
T ss_pred HHHHHHhcCCcEEEEecchhh
Confidence 445554456678999998653
No 249
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.54 E-value=0.051 Score=58.82 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++.|.|.+|.|||+||.+++.....+-..++|+..+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 47999999999999999999887655667788887654
No 250
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.54 E-value=0.048 Score=69.73 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=39.1
Q ss_pred hhccccchHhhhhhhhcCCC-CccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 432 IEMQSTEAPQRQKTKSSGRY-PRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~-~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..++|.+..+..+.+..... ..+.... .+.+.+.++|++|+|||+||+.++..+.......+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~---~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~ 634 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPN---RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDM 634 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCC---CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEh
Confidence 35677777777766311000 0000000 012468999999999999999999876544444555654
No 251
>PRK07261 topology modulation protein; Provisional
Probab=95.54 E-value=0.023 Score=58.25 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|+|++|+||||||+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988765
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.53 E-value=0.055 Score=55.90 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc---cH---HHHHH---HHHHHccCccCcccCCcccccchhh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR---YI---RQNYL---NLWSFLDVDVGIENCSDKSRIKSFE 535 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~---~~---~~~l~---~La~~L~~~~~~~~~~~~~~~~~~~ 535 (996)
.+++|.|..|.|||||.+.++-.. ....+.++++.... .. ...+. .+.+.+++...... .+....
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~-----~~~~LS 99 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR-----PFNELS 99 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC-----CcccCC
Confidence 379999999999999999987653 33456666654321 11 11111 13344444321100 011111
Q ss_pred hcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CC-CeEEEEEecCCCc
Q 001918 536 EQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GG-ETHIIISTRLPRV 596 (996)
Q Consensus 536 ~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~-gsrIIITTR~~~~ 596 (996)
..+...-.+.+.| -..+-+++||+-..--+......+.+++... .. +..||++|.+...
T Consensus 100 -~G~~qrl~laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 -GGERQRVLLARAL-AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred -HHHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 1122223344445 4677889999877543322234454544322 12 5678888877553
No 253
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.51 E-value=0.06 Score=61.37 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc--C---C-CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchh-hhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ--R---Y-KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSF-EEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~--~---F-~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~-~~~ 537 (996)
.++-|+|.+|+|||+|+..++..... . - ..++||+.+..-..+-+.++++.++....... .++... ..+
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l----~~i~~~~~~~ 199 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVL----ENVAYARAYN 199 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhc----cceEEEecCC
Confidence 47899999999999999988864321 1 1 26999988765222345667777665432100 000000 012
Q ss_pred HHHH---HHHHHHHHhcCCCEEEEEcCCCC
Q 001918 538 EEAA---ICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 538 ~~~~---~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
.+.. +..+...+...+.-|||+|-+..
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 2232 33333334345666999999864
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.065 Score=62.14 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
.+++|+|++|+||||++..++..+. ..-..+..++++.. .....+...+..++++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 4799999999999999999998653 22245777776653 2334455555666654
No 255
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.48 E-value=0.07 Score=58.82 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~ 503 (996)
.++.|.|.+|+||||++.+++.....+ -..++|++.+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 479999999999999999999887655 568899987653
No 256
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.47 E-value=0.094 Score=65.27 Aligned_cols=50 Identities=12% Similarity=-0.024 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001918 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
++.++++|.++...|+|+||.++|+++++ .++++++++ -++|++++.+|.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-----~~p~~~~~~---~~~a~~l~~~G~ 203 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR-----QHPEFENGY---VGWAQSLTRRGA 203 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh-----cCCCcHHHH---HHHHHHHHHcCC
Confidence 45556666666666666666666666665 244444444 455555554443
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.085 Score=64.89 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=94.2
Q ss_pred hcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCC
Q 001918 447 SSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCS 526 (996)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~ 526 (996)
++..|.++.. +.. +=|.|+|++|.|||-||+++|-.-. +=|+++....+.+.+. +.
T Consensus 332 NP~~Y~~lGA--KiP---kGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGSEFvE~~~------g~-------- 387 (774)
T KOG0731|consen 332 NPEQYQELGA--KIP---KGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGSEFVEMFV------GV-------- 387 (774)
T ss_pred CHHHHHHcCC--cCc---CceEEECCCCCcHHHHHHHHhcccC-----CceeeechHHHHHHhc------cc--------
Confidence 5566666632 222 1278999999999999999987632 3344332211111110 00
Q ss_pred cccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc----------c-hHHHhhhcc---CCCC--CeEEEEE
Q 001918 527 DKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW----------D-DKLVMDLLP---RFGG--ETHIIIS 590 (996)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~----------~-~~~L~~~lp---~~~~--gsrIIIT 590 (996)
....+..+...-+.+.++.+.+|.+|...--- + ..-|.+++. .+.. +.-+|-+
T Consensus 388 -----------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 388 -----------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred -----------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 11223333333346788899999888742110 0 123444543 2322 3334445
Q ss_pred ecCCCcC--------Cc-ceEEccCCCHHHHHHHHhhhcCCCC--cccHHHHHHHHHHhCCChHH
Q 001918 591 TRLPRVM--------NL-EPLKLSYLSGVEAMSLMQGSVKDYP--ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 591 TR~~~~~--------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~--~~~~~~a~~iv~~lgglPLA 644 (996)
|....+. .. ..+.++..+..+-.++|.-|+.... .+..+.++ |+...-|.+=|
T Consensus 457 tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 457 TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 5555542 12 6889999999999999999997433 34555555 88988888854
No 258
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.43 E-value=0.013 Score=59.92 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=25.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
+.|.|.+|.|||++|.+++.. ....++++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc
Confidence 689999999999999999876 23456677533
No 259
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.12 Score=60.24 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh--cCCCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYH--QRYKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~--~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
..+|+++|+.|+||||+...++.+.. .....+.++..... ...+.+..+++.++++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 35899999999999999999987643 22344445544432 34445666777777654
No 260
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.06 Score=64.01 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 539 (996)
..+|+|+|++|+||||++..++.++..+. ..+..++.+.. .....+...+..+++..... .+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a------------~d~~ 417 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEA------------DSAE 417 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEec------------CcHH
Confidence 35899999999999999999998766543 46777776543 22333444444555433211 0122
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCC
Q 001918 540 AAICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 540 ~~~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
+. ..+.+.+ ...=+||+|..-.
T Consensus 418 ~L-~~aL~~l--~~~DLVLIDTaG~ 439 (559)
T PRK12727 418 SL-LDLLERL--RDYKLVLIDTAGM 439 (559)
T ss_pred HH-HHHHHHh--ccCCEEEecCCCc
Confidence 22 2333344 2355888898864
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.33 E-value=0.048 Score=54.24 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+++|.|..|.|||||++.++.... ...+.++++.... ++...+ .. ..+...-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~------------i~~~~~-lS------------~G~~~rv~ 80 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVK------------IGYFEQ-LS------------GGEKMRLA 80 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEE------------EEEEcc-CC------------HHHHHHHH
Confidence 4799999999999999999876432 3467777753211 110000 00 11122223
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
+.+.| ..++-+++||+...--+......+.+++... +..||++|.+..
T Consensus 81 laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 81 LAKLL-LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred HHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 44445 4566788899877543332335555555543 246788877644
No 262
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.31 E-value=0.055 Score=59.68 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=62.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-++|.|++|.|||||.+.++..+.. ..+.++++...-.....-.+++.......+..... +..... +- .....+
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~---r~~v~~-~~-~k~~~~ 186 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGI---RTDVLD-GC-PKAEGM 186 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC-CCceEEECCEEeecchhHHHHHHHhcccccccccc---cccccc-cc-hHHHHH
Confidence 4899999999999999999876653 34556665432211111123433322111111000 000010 11 112223
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 546 RKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
...+....+=+||+|.+... +.+..++.....|..||+||-+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~------e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGRE------EDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcH------HHHHHHHHHHhCCCEEEEEechhHH
Confidence 44443467889999998764 3333333222246789999876443
No 263
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.30 E-value=0.014 Score=55.96 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~ 488 (996)
|+|.|++|+||||||+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 264
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.053 Score=65.16 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
..|++.+|++|||||.+|+.++..+-.+|- .|=+. ++.+.+..-|....-.+ ..+-..++
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-RfSvG--------G~tDvAeIkGHRRTYVG-----------AMPGkiIq 497 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNRKFF-RFSVG--------GMTDVAEIKGHRRTYVG-----------AMPGKIIQ 497 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCCceE-EEecc--------ccccHHhhcccceeeec-----------cCChHHHH
Confidence 358999999999999999999998877763 22221 22222222222110000 01112233
Q ss_pred HHHHHHhcCCCEEEEEcCCCCccc------------ccchHHHhhhccC-----CCCCeEEEE-EecCCC--c-----CC
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKD------------WWDDKLVMDLLPR-----FGGETHIII-STRLPR--V-----MN 598 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~------------~~~~~~L~~~lp~-----~~~gsrIII-TTR~~~--~-----~~ 598 (996)
.++.. ....-|+.||.||.+.. +.|++|=..|+.. +. =|+|+. .|-|.. + ..
T Consensus 498 ~LK~v--~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D-LSkVLFicTAN~idtIP~pLlDR 574 (906)
T KOG2004|consen 498 CLKKV--KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD-LSKVLFICTANVIDTIPPPLLDR 574 (906)
T ss_pred HHHhh--CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc-hhheEEEEeccccccCChhhhhh
Confidence 33332 34556888999998632 1244443333211 12 355554 344421 1 12
Q ss_pred cceEEccCCCHHHHHHHHhhhcC
Q 001918 599 LEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 599 ~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
..+++|.+...+|-+.+-.+++-
T Consensus 575 MEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 575 MEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheeeccCccHHHHHHHHHHhhh
Confidence 38999999999998888877763
No 265
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.24 E-value=0.086 Score=62.13 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=54.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~ 540 (996)
.++|.|.+|+|||||+.+++.....+ -+.++++-...+ .+.+.+..+...-.+... .....+..... ......
T Consensus 145 R~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~--R~~a~~ 222 (461)
T PRK12597 145 KTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGA--RMRVVL 222 (461)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHH--HHHHHH
Confidence 49999999999999999999876643 466666655444 454454444332111100 00000000000 001112
Q ss_pred HHHHHHHHHh-c-CCCEEEEEcCCCCc
Q 001918 541 AICRVRKELM-R-NIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L~-~-~~r~LLVLDdvd~~ 565 (996)
..-.+.++++ . ++.+||++|++...
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 2344556663 3 79999999999753
No 266
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.20 E-value=0.068 Score=66.55 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+++-|+|.+|+||||||.+++......-..++||+.+.. +. ...++.++++..... +. .....+.....
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t-~~---~~~A~~lGvDl~~ll------v~-~~~~~E~~l~~ 129 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA-LD---PDYAKKLGVDTDSLL------VS-QPDTGEQALEI 129 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc-hh---HHHHHHcCCChhHeE------Ee-cCCCHHHHHHH
Confidence 588999999999999999988876666678899986654 22 135677777543210 00 01133445555
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+...+...+.-|||+|.+..+
T Consensus 130 i~~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHHHhhcCCCeEEEEcchhhh
Confidence 666564567789999998753
No 267
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.20 E-value=0.0085 Score=61.42 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|.|.|.+|.|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998774
No 268
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.20 E-value=0.058 Score=59.48 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=40.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.|.|+|.||.||||+|+++...+...-..+.+++.. .+ . +....-. .....+..-......+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~------~~---~----~~~~~y~-----~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD------SL---G----IDRNDYA-----DSKKEKEARGSLKSAV 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH------HH---H-----TTSSS-------GGGHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc------cc---c----cchhhhh-----chhhhHHHHHHHHHHH
Confidence 689999999999999999999877654456666411 11 1 1111000 0001111123345556
Q ss_pred HHHHhcCCCEEEEEcCCCCcc
Q 001918 546 RKELMRNIPFLVIIDNLESEK 566 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~ 566 (996)
.+.| ++..++|+||.....
T Consensus 65 ~r~l--s~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 65 ERAL--SKDTIVILDDNNYIK 83 (270)
T ss_dssp HHHH--TT-SEEEE-S---SH
T ss_pred HHhh--ccCeEEEEeCCchHH
Confidence 6666 455899999998763
No 269
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.20 E-value=0.076 Score=64.25 Aligned_cols=127 Identities=18% Similarity=0.085 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccc---hhhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIK---SFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~---~~~~~~~~~ 541 (996)
.++.|.|.+|.|||+||.+++......-..++|+..... .. .+..-+..++.+...........+. .......+.
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~-~~-~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 351 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES-RA-QLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDH 351 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC-HH-HHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHH
Confidence 478999999999999999999887666778889876543 22 2233334555432110000000000 001123455
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhc----cC-CCCCeEEEEEecC
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLL----PR-FGGETHIIISTRL 593 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~l----p~-~~~gsrIIITTR~ 593 (996)
+..+.+.+...+.-++|+|.+.......+...+..++ .. ...|..+|+|...
T Consensus 352 ~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~t~l~t~~~ 408 (509)
T PRK09302 352 LIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFTNLT 408 (509)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 6667776644455689999997642222222222221 11 1236777888643
No 270
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.14 E-value=0.074 Score=63.81 Aligned_cols=128 Identities=19% Similarity=0.070 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccc-----------
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIK----------- 532 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~----------- 532 (996)
+++.|.|.+|.|||+||.+|+.+-..+ -+.++||..... . +.+.+-+..++..........+-.+.
T Consensus 22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~-~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~~~ 99 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-P-QDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQDV 99 (484)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-H-HHHHHHHHHcCCCHHHHhhcCceEEEecCchhccccc
Confidence 479999999999999999998875445 367888876532 2 22333344444432210000000000
Q ss_pred hhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcc----cc-cchHHHhhhccC-CCCCeEEEEEecCC
Q 001918 533 SFEEQEEAAICRVRKELMRNIPFLVIIDNLESEK----DW-WDDKLVMDLLPR-FGGETHIIISTRLP 594 (996)
Q Consensus 533 ~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~----~~-~~~~~L~~~lp~-~~~gsrIIITTR~~ 594 (996)
....+..+....+...++..++=.+|||-+.... .. .....+..++.. ...|..+|+||.+.
T Consensus 100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~ 167 (484)
T TIGR02655 100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERI 167 (484)
T ss_pred cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 0011344566667777766667789999544321 10 001223333321 12367788888654
No 271
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.14 Score=61.66 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=88.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|++|+|||-||-+++....- -||+...+. -|.+.+| ..++.+..+.
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~-----~fisvKGPE------lL~KyIG-------------------aSEq~vR~lF 753 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSNL-----RFISVKGPE------LLSKYIG-------------------ASEQNVRDLF 753 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCCe-----eEEEecCHH------HHHHHhc-------------------ccHHHHHHHH
Confidence 889999999999999998876432 345433221 1222232 1234455566
Q ss_pred HHHhcCCCEEEEEcCCCCccccc-------chHHHhhhccC-----CCCCeEEEEEecCCCcC-----C---c-ceEEcc
Q 001918 547 KELMRNIPFLVIIDNLESEKDWW-------DDKLVMDLLPR-----FGGETHIIISTRLPRVM-----N---L-EPLKLS 605 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~-------~~~~L~~~lp~-----~~~gsrIIITTR~~~~~-----~---~-~~~~v~ 605 (996)
.+-+..+++.|.||.+|++.--- ....+.++|-. .-.|.-|+-.|-.+++. . . +.+.-+
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCP 833 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCC
Confidence 66557899999999999852000 01223333321 11256666544444431 1 2 566677
Q ss_pred CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHH
Q 001918 606 YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLA 644 (996)
..+..|-+++|.........++.-..+.++....|..-|
T Consensus 834 ~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 834 LPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred CCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchh
Confidence 788899999998887643322222356788888887654
No 272
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.2 Score=53.08 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=90.2
Q ss_pred ccccCccchhcccc-chHhhhhhh---hcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 424 VWKESEKEIEMQST-EAPQRQKTK---SSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 424 v~~~~~~~~~fvGR-~~el~~l~~---~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
|-+.|.-..+++|+ +..++++.+ -+-.+..++..-...... =|.++|++|.|||-||+++++. ..+.||.
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK-GvlLygppgtGktLlaraVahh-----t~c~fir 211 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK-GVLLYGPPGTGKTLLARAVAHH-----TDCTFIR 211 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc-ceEEecCCCCchhHHHHHHHhh-----cceEEEE
Confidence 34556566677775 333444432 222233333322222222 3789999999999999998864 3455664
Q ss_pred CcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH---hcCCCEEEEEcCCCCccccc-------
Q 001918 500 GESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL---MRNIPFLVIIDNLESEKDWW------- 569 (996)
Q Consensus 500 ~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~r~LLVLDdvd~~~~~~------- 569 (996)
.....+ .++.+| ++..++++.+ +..-+-.|..|.+|+...--
T Consensus 212 vsgsel------vqk~ig----------------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~gg 263 (404)
T KOG0728|consen 212 VSGSEL------VQKYIG----------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGG 263 (404)
T ss_pred echHHH------HHHHhh----------------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCc
Confidence 332111 122222 2334444444 35678888899998753210
Q ss_pred chH---HHhhhcc---CC--CCCeEEEEEecCCCcC-----C---c-ceEEccCCCHHHHHHHHhhhcC
Q 001918 570 DDK---LVMDLLP---RF--GGETHIIISTRLPRVM-----N---L-EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 570 ~~~---~L~~~lp---~~--~~gsrIIITTR~~~~~-----~---~-~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
|.+ .+.+++. .| .+.-+||..|..-++. . . ..++.++.+.+.-.++|.-+..
T Consensus 264 dsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 264 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 111 1122222 11 2367888877655442 1 1 5788888888888888877764
No 273
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.11 E-value=0.13 Score=58.27 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcH-HH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQE-EA 540 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~-~~ 540 (996)
..+++|+|++|+||||++..++..+...-..+..++++.. ...+.+...+...+++.-.... ..++ ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~---------~~dpa~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE---------GADPASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC---------CCCHHHH
Confidence 3589999999999999999999988766556777776543 1122333445555544211100 0112 12
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 541 AICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
..+.+...+ ...-=++|+|-.-..
T Consensus 185 v~~~l~~~~-~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 185 AFDAIQAAK-ARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHHHHHHH-hCCCCEEEEeCCCCC
Confidence 233444444 445568888987653
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.047 Score=67.47 Aligned_cols=154 Identities=20% Similarity=0.277 Sum_probs=93.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-CC------EEEEEeCcC
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-YK------MVLWVGGES 502 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~------~v~wi~~~~ 502 (996)
+-...+||+.|++++-. -|.+.++ .. -.++|.+|+|||.++--++.++... -+ .++=++
T Consensus 168 klDPvIGRd~EI~r~iq------IL~RR~K---NN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD--- 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQ------ILSRRTK---NN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD--- 233 (786)
T ss_pred CCCCCcChHHHHHHHHH------HHhccCC---CC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec---
Confidence 44568999999998753 1111111 11 3689999999999999999997643 11 111111
Q ss_pred ccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc-------cc-hHHH
Q 001918 503 RYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW-------WD-DKLV 574 (996)
Q Consensus 503 ~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~-------~~-~~~L 574 (996)
+.... . + ..+..+.++.+..|.+.+...+++.|.+|.++.+-.- +| ...|
T Consensus 234 ---------~g~Lv----A--G-------akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiL 291 (786)
T COG0542 234 ---------LGSLV----A--G-------AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLL 291 (786)
T ss_pred ---------HHHHh----c--c-------ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhh
Confidence 11110 0 0 1223467788888888886566999999999875321 11 1223
Q ss_pred hhhccCCCCCeEEEEEecCCC----c-------CCcceEEccCCCHHHHHHHHhhhcC
Q 001918 575 MDLLPRFGGETHIIISTRLPR----V-------MNLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 575 ~~~lp~~~~gsrIIITTR~~~----~-------~~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
+..|.. | .-++|-.|.... + ...+.+.|++.+.+++.++|.....
T Consensus 292 KPaLAR-G-eL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 292 KPALAR-G-ELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred HHHHhc-C-CeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 333333 2 345555444321 2 1237899999999999999987654
No 275
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.026 Score=56.31 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=36.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVG 521 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~ 521 (996)
+|.|.|++|.||||+|+.+++.+.-.| + +....|.++|+..++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-----v-----saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-----V-----SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-----e-----eccHHHHHHHHHcCCCHH
Confidence 589999999999999999998875333 2 334578889999887653
No 276
>PTZ00035 Rad51 protein; Provisional
Probab=95.10 E-value=0.1 Score=59.58 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccch-hhh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKS-FEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~-~~~ 536 (996)
.++.|+|.+|.|||||+..++....- .-..++||+.... .. +.+..+++.++...... ..++.. ...
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~-eri~~ia~~~g~~~~~~----l~nI~~~~~~ 193 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRP-ERIVQIAERFGLDPEDV----LDNIAYARAY 193 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCH-HHHHHHHHHhCCChHhH----hhceEEEccC
Confidence 48999999999999999998765431 1236779987654 33 23556666665442110 000000 001
Q ss_pred cHHHH---HHHHHHHHhcCCCEEEEEcCCCC
Q 001918 537 QEEAA---ICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 537 ~~~~~---~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
+.++. +..+.+.+...+--|||+|.+..
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 22233 33334444344556999999875
No 277
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.09 E-value=0.1 Score=57.34 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHh----cCCCEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchh
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYH----QRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSF 534 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~----~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~ 534 (996)
|+ .++|.|-.|+|||+|+..++++.. .+-+.++++-...+ .+.+.+..+...=.+... .....+..-...+
T Consensus 69 GQ-R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 69 GQ-KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CC-EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 44 489999999999999999887653 22356777765554 455555444332111100 0000000000000
Q ss_pred hhcHHHHHHHHHHHHh-c-CCCEEEEEcCCCCc
Q 001918 535 EEQEEAAICRVRKELM-R-NIPFLVIIDNLESE 565 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~-~-~~r~LLVLDdvd~~ 565 (996)
...-..-.+.++++ + ++++|||+||+...
T Consensus 148 --~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 --ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred --HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 01112334566663 3 68999999999753
No 278
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.03 E-value=0.012 Score=56.85 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEE
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMV 495 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v 495 (996)
|.|+|.+|+|||++|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999988888654
No 279
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.13 Score=56.71 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.+|+=|+|+.|.||||||.+++-..+..-..++||+.+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~ 99 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA 99 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3589999999999999999999887777778999998875
No 280
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.99 E-value=0.11 Score=56.66 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
+|.|+|++|.||||+|++++..+....-.+..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 378999999999999999998876543333444
No 281
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.98 E-value=0.038 Score=56.70 Aligned_cols=36 Identities=28% Similarity=0.225 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+|+|.|++|.||||+|+.++..+...-..+.+++.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 489999999999999999999988654445677754
No 282
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.97 E-value=0.12 Score=59.22 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh--cCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCc
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYH--QRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGI 522 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~--~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~ 522 (996)
.++|.++|+.|+||||-...++.++. ..=..+..|..++- -..+.+...++.|+++...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 57999999999999987777777766 34456777766543 4456677888889888643
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.97 E-value=0.022 Score=59.64 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
||+|.|.+|.||||+|+.++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 284
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.17 Score=52.98 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCC-----CEEEEEeCcCc-cHHHHHHHHHHHccCcc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRY-----KMVLWVGGESR-YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-----~~v~wi~~~~~-~~~~~l~~La~~L~~~~ 520 (996)
...|.+|.|++|+||||+.+. ++|+.+-. ++-+++.+.+- ........|.+..|+..
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~-lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred CCceEEEECCCCcCHHHHHHH-HHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence 345899999999999999997 56655543 47778876654 33334455666665543
No 285
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.95 E-value=0.12 Score=55.85 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~ 503 (996)
.++.|.|.+|.|||+++.+++.....+ -..++|++.+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 379999999999999999999887655 457888876653
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.94 E-value=0.062 Score=64.78 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
..+|..++|++|+||||||..+|++. .| .++=|++...
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa--GY-sVvEINASDe 362 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA--GY-SVVEINASDE 362 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc--Cc-eEEEeccccc
Confidence 34689999999999999999998763 23 3666766654
No 287
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.90 E-value=0.082 Score=66.80 Aligned_cols=133 Identities=14% Similarity=0.183 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+++++|++|+||||+|+.++..+...|-.+- +... ... ...+....-.+ ........
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~---~~~~~d~~-------~i~g~~~~~~g-----------~~~G~~~~ 408 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMA---LGGVRDEA-------EIRGHRRTYIG-----------SMPGKLIQ 408 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE---cCCCCCHH-------HhccchhccCC-----------CCCcHHHH
Confidence 47999999999999999999987765553222 2211 111 11111000000 00001122
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccc---hHHHhhhccC--------------C-CCCeEEEEEecCCCcC-----Ccc
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWD---DKLVMDLLPR--------------F-GGETHIIISTRLPRVM-----NLE 600 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~---~~~L~~~lp~--------------~-~~gsrIIITTR~~~~~-----~~~ 600 (996)
.+.. . ....-+|+||.+|....-.. ...|.+++.. + -.+.-+|.|+....+. ...
T Consensus 409 ~l~~-~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ 486 (784)
T PRK10787 409 KMAK-V-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRME 486 (784)
T ss_pred HHHh-c-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhccee
Confidence 2221 1 22334688999987632110 1233333311 0 1234445555444442 237
Q ss_pred eEEccCCCHHHHHHHHhhhc
Q 001918 601 PLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a 620 (996)
++++.+++.+|-.++...+.
T Consensus 487 ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 487 VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eeecCCCCHHHHHHHHHHhh
Confidence 89999999999999988876
No 288
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.89 E-value=1 Score=52.13 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=44.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVG 521 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~ 521 (996)
.||.++|.-|.||||.|..+++.++.+-..+.-+.++.. ...+.+..|+.+.+.+.-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 489999999999999999999988875456666666643 555677888888877653
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=0.67 Score=51.91 Aligned_cols=145 Identities=8% Similarity=0.056 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC---------CC-EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR---------YK-MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSF 534 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~---------F~-~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~ 534 (996)
.+..++|..|+||+++|..++..+-.. .+ .+.+++.....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~------------------------------ 68 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD------------------------------ 68 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc------------------------------
Confidence 468899999999999999999986221 11 12222200000
Q ss_pred hhcHHHHHHHHHHHH--h---cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCC-CcC-----CcceEE
Q 001918 535 EEQEEAAICRVRKEL--M---RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLP-RVM-----NLEPLK 603 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L--~---~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-~~~-----~~~~~~ 603 (996)
-..++ +..+.+.+ . .+.+=++|+||++....- ....|.+++...++.+.+|++|.+. .+. .+.+++
T Consensus 69 -i~vd~-Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~-a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 69 -LSKSE-FLSAINKLYFSSFVQSQKKILIIKNIEKTSNS-LLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred -CCHHH-HHHHHHHhccCCcccCCceEEEEecccccCHH-HHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 01112 22222323 1 246778889999876431 1245666775555677777766543 332 247899
Q ss_pred ccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHH
Q 001918 604 LSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAV 647 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~ 647 (996)
+.+++.++..+.+... . . ..+.+..++...+|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-~---~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-K---EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-C---ChhHHHHHHHHcCCHHHHHHH
Confidence 9999999999888765 1 2 223355566666663344544
No 290
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.059 Score=59.26 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh----cCCCEEEEEe
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYH----QRYKMVLWVG 499 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~----~~F~~v~wi~ 499 (996)
.++|.++|+||.|||+|.++++.++. ++|....-|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 46899999999999999999999653 4554444443
No 291
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.86 E-value=0.11 Score=58.89 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc--C----CCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchh-hh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ--R----YKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSF-EE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~--~----F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~-~~ 536 (996)
.++.|+|.+|+|||||+..++....- . -..++||+.+.. ... -+..+++.++...... ...+.-. ..
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~-Rl~~ia~~~~~~~~~~----l~~i~~~~~~ 171 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPE-RLLAIAERYGLNPEDV----LDNVAYARAY 171 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHH-HHHHHHHHcCCChHHh----hccEEEEecC
Confidence 48999999999999999998863221 1 136799988765 333 3555666655432110 0000000 01
Q ss_pred cHHHH---HHHHHHHHhcCCCEEEEEcCCCCc
Q 001918 537 QEEAA---ICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~---~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.++. +..+...+...+.-|||+|-+...
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence 22222 333333343345668999998643
No 292
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.83 E-value=0.15 Score=52.55 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~ 486 (996)
.+++|.|+.|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999998853
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.82 E-value=0.071 Score=41.42 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 001918 934 VLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLS 981 (996)
Q Consensus 934 ~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA 981 (996)
++..+|.+|..+|++++|+++|+++++. .|++|+.. ..||
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~---~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAW---RALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHH---HHhh
Confidence 4567999999999999999999999995 57777765 4554
No 294
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.22 Score=60.67 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=47.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|++|.|||-||++++-.++ .-|++...+.+ |.+-.+ ..++-+..|.
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs-----L~FlSVKGPEL----------LNMYVG---------------qSE~NVR~VF 757 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPEL----------LNMYVG---------------QSEENVREVF 757 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce-----eeEEeecCHHH----------HHHHhc---------------chHHHHHHHH
Confidence 88999999999999999998764 33454333211 111111 2234456666
Q ss_pred HHHhcCCCEEEEEcCCCCc
Q 001918 547 KELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~ 565 (996)
++-+...++.|.||.+|++
T Consensus 758 erAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHhhccCCeEEEecccccc
Confidence 6666789999999999985
No 295
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.81 E-value=0.094 Score=65.85 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.+.++|++|+|||+||+.++..+... .+.+++..-.-. ..+.+.+|.+.+-.+ .+....
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id~se~~~~---~~~~~LiG~~~gyvg--------------~~~~g~ 548 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMER---HTVSRLIGAPPGYVG--------------FDQGGL 548 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC---cEEeechhhccc---ccHHHHcCCCCCccc--------------ccccch
Confidence 468999999999999999999887432 334443221101 123344454322110 011123
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.+......+|+||+++..
T Consensus 549 L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 549 LTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHHHhCCCcEEEeccHhhh
Confidence 444453455679999999986
No 296
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.81 E-value=0.04 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|.+|.||||+++.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 297
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.75 E-value=0.081 Score=67.66 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..+.++|++|+|||+||+.+++.+...-...+-++...-.-. ..+.+.++.+.+-.+. +....
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~---~~~~~l~g~~~gyvg~--------------~~~~~ 602 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK---HTVSKLIGSPPGYVGY--------------NEGGQ 602 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc---ccHHHhcCCCCcccCc--------------Cccch
Confidence 357799999999999999999987544334444443211100 1122333332211110 01123
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
+.+.+......+|+||+++..
T Consensus 603 l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HHHHHHhCCCeEEEECChhhC
Confidence 445553444568999999975
No 298
>PRK03839 putative kinase; Provisional
Probab=94.73 E-value=0.025 Score=58.37 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|.|.|++|.||||+|+.++.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.73 E-value=0.18 Score=51.41 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHH--H--HHHHHHccCccCcccCCcccccchhhhcH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQN--Y--LNLWSFLDVDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~--l--~~La~~L~~~~~~~~~~~~~~~~~~~~~~ 538 (996)
.+++|.|..|.|||||++.++-.+.. ..+.++++.... .+.+. + ..+.+.+..... .... ..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~----------~~LS-~G 95 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWD----------DVLS-GG 95 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhccCC----------CCCC-HH
Confidence 37999999999999999998875432 233333322100 00000 0 011111111000 0000 11
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 539 EAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 539 ~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
+...-.+.+.| ..++=+|+||.-..--+......+.+++... +..||++|.+...
T Consensus 96 ~~~rv~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 96 EQQRLAFARLL-LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHHHH-HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhH
Confidence 22233344444 4667788888876543322234555555443 3567888877554
No 300
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.67 E-value=0.073 Score=62.66 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=51.2
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+..|.+++|+|++|-.+|+.++|...|.+|+.+ .|.-+.+.+|||.+++--||+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCc
Confidence 5667899999999999999999999999999998 588899999999999999987
No 301
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.67 E-value=0.18 Score=55.38 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCCChhHHHHH-HHHHHhcCCCEE-EEEeCcCc--cHHHHHHHHHHHccCcc--CcccCCcccccchhhh
Q 001918 463 GKGIACVTGDSGIGKTELLLE-FAYRYHQRYKMV-LWVGGESR--YIRQNYLNLWSFLDVDV--GIENCSDKSRIKSFEE 536 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~-~~~~~~~~F~~v-~wi~~~~~--~~~~~l~~La~~L~~~~--~~~~~~~~~~~~~~~~ 536 (996)
|+ .++|.|.+|+|||+||.. ++++. +-+.+ +++-...+ .+.+.+..+...=.+.. -.....+..-...+
T Consensus 69 GQ-r~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~-- 143 (274)
T cd01132 69 GQ-RELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY-- 143 (274)
T ss_pred CC-EEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH--
Confidence 44 489999999999999754 44432 23444 44443333 44444444432111110 00000000000000
Q ss_pred cHHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001918 537 QEEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
-.....-.+.++++ +++.+|||+||+...
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 00111234455552 578999999999864
No 302
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.65 E-value=0.29 Score=59.37 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=31.6
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHH
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.+..++.++.. +... .. .-|.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~a------l~~~----~~-~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAA------LCGP----NP-QHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHH------HhCC----CC-ceEEEECCCCCCHHHHHHHHHHH
Confidence 3678888888777631 1000 01 24789999999999999998764
No 303
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.65 E-value=0.088 Score=62.43 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
+|++++|+.|+||||++..++..+..+ ...+..+..+.. ...+.+..+++.+++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 589999999999999999999876433 235777876654 45566777777777654
No 304
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.4 Score=57.18 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCCcccccchHHHhhhc---cCCCCCeEEEEEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCC
Q 001918 552 NIPFLVIIDNLESEKDWWDDKLVMDLL---PRFGGETHIIISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKD 622 (996)
Q Consensus 552 ~~r~LLVLDdvd~~~~~~~~~~L~~~l---p~~~~gsrIIITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~ 622 (996)
.+.=..|+|.|+-+. ......+| -..+.+...|..|.+.+ + .++..|.++.++.++-...|...+..
T Consensus 118 ~ryKVyiIDEvHMLS----~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 118 GRYKVYIIDEVHMLS----KQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred ccceEEEEecHHhhh----HHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHh
Confidence 444578899998652 23444444 22334677777777654 3 23489999999999999999888863
Q ss_pred CC-cccHHHHHHHHHHhCCChH-HHHHHHHHHhc--CCCCHHHHHHHHhc
Q 001918 623 YP-ITEVDALRVIEEKVGRLTM-GLAVVGAILSE--LPINPSRLLDTINR 668 (996)
Q Consensus 623 ~~-~~~~~~a~~iv~~lgglPL-AL~~~gs~L~~--~~~s~~e~l~~L~~ 668 (996)
.. ..+.+....|.+..+|-.- |+.++-..+.. ..++.+...+.+.-
T Consensus 194 E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~ 243 (515)
T COG2812 194 EGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGL 243 (515)
T ss_pred cCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCC
Confidence 22 3466677788888888432 22222222222 23555555555533
No 305
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.61 E-value=0.087 Score=54.48 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcc---c-CCcccccchhh----
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIE---N-CSDKSRIKSFE---- 535 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~---~-~~~~~~~~~~~---- 535 (996)
.+++|.|..|.|||||.+.++.... ...+.++++.... .... -....+.++...+.. . .....-..+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSP-RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCH-HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 3799999999999999999886543 3356677765332 1100 001112222211110 0 00000000000
Q ss_pred -hcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCC
Q 001918 536 -EQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPR 595 (996)
Q Consensus 536 -~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~ 595 (996)
...+...-.+...| -.++-+|+||+-..--+......+.+++... ..+..||++|.+..
T Consensus 105 LS~G~~qrl~la~al-~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 105 LSGGNQQKVVLARWL-ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCHHHHHHHHHHHHH-ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 00011111233334 4677789999977643332334555554321 23567888888753
No 306
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.60 E-value=0.27 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|.|||||++.++...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998753
No 307
>PRK06762 hypothetical protein; Provisional
Probab=94.57 E-value=0.032 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999887
No 308
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.13 Score=56.39 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
...++|||++|.|||-+|+.++..+--.|- .+. +..+... .+ -+...
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl---~v~--ss~lv~k------yi----------------------GEsaR 212 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFL---KVV--SSALVDK------YI----------------------GESAR 212 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceE---Eee--Hhhhhhh------hc----------------------ccHHH
Confidence 347999999999999999999998765552 111 0011000 01 01233
Q ss_pred HHHHHH---hcCCCEEEEEcCCCCcccc-------cch---HHHhhhccC---C--CCCeEEEEEecCCCcCC-------
Q 001918 544 RVRKEL---MRNIPFLVIIDNLESEKDW-------WDD---KLVMDLLPR---F--GGETHIIISTRLPRVMN------- 598 (996)
Q Consensus 544 ~l~~~L---~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~lp~---~--~~gsrIIITTR~~~~~~------- 598 (996)
.|+++. +...++.|.+|++|....- .+. ..|.+++.. + -+..++|+||.+.....
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG 292 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG 292 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCc
Confidence 344433 3466788888988864110 011 122223221 1 23689999999877521
Q ss_pred -c-ceEEccCCCHHHHHHHHhhhcC
Q 001918 599 -L-EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 599 -~-~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
. ..|+.+-.+..--+.++.-++.
T Consensus 293 Rldrk~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 293 RLDRKVEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred cccceeccCCcchhhceeeEeeccc
Confidence 2 5777776565555555555543
No 309
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.54 E-value=0.23 Score=52.40 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=37.2
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
|..-...||-+..+..+.- -..+| ..+-+.|.||||+||||-+..+++++-.
T Consensus 23 P~~l~dIVGNe~tv~rl~v------ia~~g-----nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSV------IAKEG-----NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHH------HHHcC-----CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4456678898888887761 00111 2234889999999999999999998654
No 310
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.54 E-value=0.13 Score=62.24 Aligned_cols=125 Identities=20% Similarity=0.151 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHHHHHccCccCccc----------CCccccc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIEN----------CSDKSRI 531 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~----------~~~~~~~ 531 (996)
.++.|.|.+|+|||+||.++++....+ -..++|+..+.. .+.+.+ ..++....... .......
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~----~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNV----ASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHH----HHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 479999999999999999999876655 467899977654 333322 22333211100 0000000
Q ss_pred c-hhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc-c----hHHHhhhccC-CCCCeEEEEEecC
Q 001918 532 K-SFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW-D----DKLVMDLLPR-FGGETHIIISTRL 593 (996)
Q Consensus 532 ~-~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~-~----~~~L~~~lp~-~~~gsrIIITTR~ 593 (996)
. .-..+.......+.+.+...+.-.+|+|.+..+.... + ...+..++.. ...|..+|+|+..
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~ 176 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGER 176 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 0 0001334455566666644556679999998532110 1 1123333221 1236777888754
No 311
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.50 E-value=0.23 Score=52.44 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=33.3
Q ss_pred cCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCCcC-CcceEEccCC
Q 001918 551 RNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPRVM-NLEPLKLSYL 607 (996)
Q Consensus 551 ~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~~~-~~~~~~v~~L 607 (996)
..++-||+||.-..--+......+.+++... ..|..||++|.+.... ...++.++.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~~~~~~ 201 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPGARELDLGPF 201 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhccCcEEeecCc
Confidence 4567889999877543322234555555421 2356788888876542 2356666553
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.50 E-value=0.071 Score=38.66 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001918 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIR 962 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir 962 (996)
|.++.++|.+|..+|++++|.+.|++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567899999999999999999999999974
No 313
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.49 E-value=0.17 Score=59.50 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQ 537 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~ 537 (996)
|+ .++|.|.+|+|||||+..++.....+. +.++++-...+ .+.+.+..+...=.+... .....+..-... ..
T Consensus 144 GQ-R~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r--~~ 220 (463)
T PRK09280 144 GG-KIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR--LR 220 (463)
T ss_pred CC-EEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH--HH
Confidence 44 499999999999999999988766553 34555544433 455555444332111100 000000000000 01
Q ss_pred HHHHHHHHHHHH--hcCCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKEL--MRNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L--~~~~r~LLVLDdvd~~ 565 (996)
.....-.+.+++ ++++.+||++|++...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 112233455666 2689999999999753
No 314
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.47 E-value=0.029 Score=55.13 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~ 488 (996)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 315
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.26 Score=61.23 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.....|+.|+|||.||++++..+-..=+..+-++.+. + ..-+.+.+.+|.+.+-.+..+ -..
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSE-y--~EkHsVSrLIGaPPGYVGyee--------------GG~ 584 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSE-Y--MEKHSVSRLIGAPPGYVGYEE--------------GGQ 584 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHH-H--HHHHHHHHHhCCCCCCceecc--------------ccc
Confidence 46788999999999999999998765445555554221 1 122345666777654332211 223
Q ss_pred HHHHHhcCCCE-EEEEcCCCCc
Q 001918 545 VRKELMRNIPF-LVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~-LLVLDdvd~~ 565 (996)
+-+.. +.+++ +|.||.++..
T Consensus 585 LTEaV-Rr~PySViLlDEIEKA 605 (786)
T COG0542 585 LTEAV-RRKPYSVILLDEIEKA 605 (786)
T ss_pred hhHhh-hcCCCeEEEechhhhc
Confidence 44445 55665 6778999975
No 316
>PRK04040 adenylate kinase; Provisional
Probab=94.46 E-value=0.04 Score=57.50 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYK 493 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~ 493 (996)
+|+|+|++|.||||+++.++.++...+.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~ 31 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYK 31 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCe
Confidence 7999999999999999999998753343
No 317
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.43 E-value=0.033 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.-|.|+|..|.||+++|+.++..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 35899999999999999987664
No 318
>PRK06696 uridine kinase; Validated
Probab=94.43 E-value=0.057 Score=57.88 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
..+|+|.|.+|.||||||..++..+......++-+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~ 56 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA 56 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 35899999999999999999999886554334333
No 319
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.43 E-value=0.13 Score=51.52 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+|.|+|.+|.||||||+.+...+...-..++.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4789999999999999999998764332344443
No 320
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.88 Score=52.71 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=76.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
-.++|+||.|||++..++|+-+. |+ ||=++..+. . +..+ ++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~--yd-IydLeLt~v------------------~--------------~n~d----Lr 278 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLN--YD-IYDLELTEV------------------K--------------LDSD----LR 278 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcC--Cc-eEEeeeccc------------------c--------------CcHH----HH
Confidence 68999999999999999988653 33 333321110 0 0111 34
Q ss_pred HHH-hcCCCEEEEEcCCCCcccccc-----------------hHHHhhhc----cCCCCCeEEEE-EecCCCcC------
Q 001918 547 KEL-MRNIPFLVIIDNLESEKDWWD-----------------DKLVMDLL----PRFGGETHIII-STRLPRVM------ 597 (996)
Q Consensus 547 ~~L-~~~~r~LLVLDdvd~~~~~~~-----------------~~~L~~~l----p~~~~gsrIII-TTR~~~~~------ 597 (996)
+.| ....+-+||+.|+|..-++-+ -..|..++ ..+| +=|||| ||-...-.
T Consensus 279 ~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlR 357 (457)
T KOG0743|consen 279 HLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLR 357 (457)
T ss_pred HHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcC
Confidence 444 246677888888876422110 01122222 2233 346655 56554321
Q ss_pred --Cc-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHH
Q 001918 598 --NL-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 598 --~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
.. -.+.++.=+.+.-..|+..+.+... ...++.+|.+...+.-+.=..++..
T Consensus 358 pGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 358 PGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 12 3566777777777777777775321 3445556666555554443344333
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.43 E-value=0.075 Score=38.30 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001918 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIR 962 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir 962 (996)
|..+..+|.+|+.+|++++|.+.+++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999874
No 322
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.37 E-value=0.14 Score=54.47 Aligned_cols=96 Identities=20% Similarity=0.176 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCcc--CcccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDV--GIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~--~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|.|.+|+|||+|+.++++.... +.++++-+..+ .+.+.+..+...-.+.. -.....+..... ..-....
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~--r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQDA--DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAA--RYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHH--HHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcccc--cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHH--Hhhhhcc
Confidence 4899999999999999999987643 34466655443 45555544433211110 000000000000 0001111
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ ..++.+|||+||+...
T Consensus 93 a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred chhhhHHHhhcCCceeehhhhhHHH
Confidence 22344555 2689999999999753
No 323
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.35 E-value=0.3 Score=51.98 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=67.8
Q ss_pred ccccccCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 422 PVVWKESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 422 p~v~~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
|+....+.+-..++|-+..-+.+.++.. +...|- +..-|.+||--|.|||.|++++.+.+.+++-..+=|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~---~F~~G~----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~-- 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTE---QFAEGL----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD-- 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHH---HHHcCC----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--
Confidence 3333444555678888777776664211 111121 2234899999999999999999999888775433331
Q ss_pred CccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhcc
Q 001918 502 SRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLP 579 (996)
Q Consensus 502 ~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp 579 (996)
.+.+ .....|.+.|+ ...|+.|..||..-.+.-..-+.|+..+.
T Consensus 121 ----k~dl------------------------------~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 121 ----KEDL------------------------------ATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ----HHHH------------------------------hhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 0111 11223334442 57889999999865432212256666653
No 324
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.35 E-value=0.028 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
|-|+|.+|+|||+||..++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46999999999999999998776543
No 325
>PRK08233 hypothetical protein; Provisional
Probab=94.33 E-value=0.032 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|.+|.||||||..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999988764
No 326
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.30 E-value=0.06 Score=56.55 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+|+|+|++|.||||||+.+...+...-.++++++.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 489999999999999999999987655455677754
No 327
>PRK00625 shikimate kinase; Provisional
Probab=94.28 E-value=0.036 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
|.|+||+|.||||+++.++.++.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998875
No 328
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.26 E-value=0.19 Score=59.09 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=54.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCc--cHHHHHHHHHHHccCcc--CcccCCcccccchhhhcHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESR--YIRQNYLNLWSFLDVDV--GIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~--~~~~~~~~~~~~~~~~~~~~ 540 (996)
.++|.|.+|+|||+|+.+++..... +-+.++|+-...+ .+.+.+..+...-.+.. -.....+..-... .....
T Consensus 140 r~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r--~~~~~ 217 (449)
T TIGR03305 140 KAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR--FRVGH 217 (449)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH--HHHHH
Confidence 4999999999999999999887542 2367777765544 44444444332111110 0000000000000 01112
Q ss_pred HHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001918 541 AICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
..-.+.++++ +++.+|||+||+...
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2345566663 479999999999764
No 329
>PRK07667 uridine kinase; Provisional
Probab=94.25 E-value=0.064 Score=56.14 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|||.|.+|.||||+|..++..+......+.-++..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4899999999999999999999887654344444433
No 330
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.22 E-value=0.22 Score=58.50 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~ 540 (996)
.++|.|.+|+|||+|+..++.....+. ..+++.-...+ .+.+.+..+...=.+... .....+..-... ....-
T Consensus 145 r~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R--~~a~~ 222 (461)
T TIGR01039 145 KIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR--MRVAL 222 (461)
T ss_pred EEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH--HHHHH
Confidence 499999999999999999998765543 35556655443 555555544321111100 000000000000 01111
Q ss_pred HHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001918 541 AICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
..-.+.++++ +++.+|||+||+...
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2344566663 478999999999864
No 331
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.20 E-value=0.13 Score=60.06 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=49.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|.|..|.|||||+..++.... .+.+++.-...+ .+.+.+..+...-++... .....+..-...+ .....
T Consensus 164 rigI~G~sG~GKSTLL~~I~~~~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~--~a~~~ 239 (444)
T PRK08972 164 RMGLFAGSGVGKSVLLGMMTRGTT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL--KGCET 239 (444)
T ss_pred EEEEECCCCCChhHHHHHhccCCC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH--HHHHH
Confidence 699999999999999988875432 245555544333 444444332221111100 0000000000000 01112
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ .+++.+||++||+...
T Consensus 240 A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 240 ATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHcCCCEEEEEcChHHH
Confidence 23455666 3689999999999754
No 332
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.18 E-value=0.17 Score=57.21 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=48.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~ 542 (996)
..++|.|..|.|||||...++.......-.+..+.-....+..........-++... .....+..-.... ......
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~--~~~~~a 147 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV--KAAYTA 147 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH--HHHHHH
Confidence 368999999999999998887654332212223322222444433333222111100 0000000000000 111223
Q ss_pred HHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 543 CRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 543 ~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
-.+.+++ .+++.+||++||+...
T Consensus 148 ~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 148 TAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHcCCCeEEEeccchHH
Confidence 3445555 3689999999998753
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.15 E-value=0.074 Score=54.93 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+++|.|..|.|||||.+.++.-+. ...+.++++...- ...+.. . .+ ..+...-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~-------~--LS---------------gGq~qrv 80 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYI-------D--LS---------------GGELQRV 80 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccC-------C--CC---------------HHHHHHH
Confidence 3899999999999999998876443 2345555543211 000000 0 00 1112223
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC--CCCeEEEEEecCCCc
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF--GGETHIIISTRLPRV 596 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~--~~gsrIIITTR~~~~ 596 (996)
.+.+.| ..++-+++||.-..--+......+.+++... ..+..||++|.+...
T Consensus 81 ~laral-~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 81 AIAAAL-LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHH-hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 344444 4667788899876543221223444444221 113567788877543
No 334
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.14 E-value=0.33 Score=50.94 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|..|.|||||.+.++... ....+.++++
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~ 61 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFE 61 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEEC
Confidence 489999999999999999887643 2233444443
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.26 Score=61.39 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cC-CCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH-QR-YKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
.||+++|+.|+||||++..++..+. .+ ...+..+..+.. ...+.+..+++.++++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 5899999999999999999998764 23 346778876654 34456666777777654
No 336
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.12 E-value=0.4 Score=54.16 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
.-+|||.|.=|.|||++...+.+++...
T Consensus 20 ~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 20 PFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3489999999999999999999988877
No 337
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.16 Score=51.01 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH-hcCCCEEEEEeCcCccHHHHHHHHHHHccCcc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY-HQRYKMVLWVGGESRYIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~-~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~ 520 (996)
.+|+|+|.+|+||||+.......+ ..+. + +......++|...++..
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~i-----v-----NyG~~Mle~A~k~glve 51 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKI-----V-----NYGDLMLEIAKKKGLVE 51 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhcee-----e-----eHhHHHHHHHHHhCCcc
Confidence 479999999999999999877665 1111 1 34455567777776654
No 338
>PTZ00301 uridine kinase; Provisional
Probab=94.10 E-value=0.044 Score=58.20 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
-+|||.|.+|.||||||..+..++...+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 4899999999999999999998876544
No 339
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.09 E-value=0.088 Score=61.02 Aligned_cols=57 Identities=9% Similarity=-0.040 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001918 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+..+..++|+|.+|..+|+|++|...|+++|++ .|+|++...+.+|||.+|..+|++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCH
Confidence 345778999999999999999999999999996 688988878899999999998875
No 340
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.17 Score=52.81 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~ 500 (996)
.+++|.|..|.|||||.+.++-... ....+.++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g 70 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING 70 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECC
Confidence 4899999999999999999886432 22456666643
No 341
>PRK13947 shikimate kinase; Provisional
Probab=94.07 E-value=0.04 Score=56.11 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
|.|+|++|.||||+|+.+++++.-.|
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999999999999875443
No 342
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.03 E-value=0.045 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|.|+|++|.||||+|+.++.++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 343
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.99 E-value=0.05 Score=57.56 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|.+|+||||||..++..+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999877
No 344
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.33 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
|.++|++|.|||-||+++|-.....
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 7899999999999999999987643
No 345
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.93 E-value=0.058 Score=55.76 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=27.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+|+|.|.+|.||||||..++..+......+..++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4899999999999999999998765443444553
No 346
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.90 E-value=0.33 Score=49.82 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh-------cCC-----------------------CEEEEEeCcCc-cHHHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYH-------QRY-----------------------KMVLWVGGESR-YIRQNYLNL 512 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~-------~~F-----------------------~~v~wi~~~~~-~~~~~l~~L 512 (996)
.+|..|+|..|+|||||...++-... .+| ..-+|+.+++- ++...++++
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~ 116 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEA 116 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhh
Confidence 46889999999999999998876421 011 12244444433 222222222
Q ss_pred HHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHh--hhccC-CCCCeEEEE
Q 001918 513 WSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVM--DLLPR-FGGETHIII 589 (996)
Q Consensus 513 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~--~~lp~-~~~gsrIII 589 (996)
...-+... .....+ .-.+.....+.+++ +.+=+-|||.-+..-.. ..||. ..+.. ...|+.|||
T Consensus 117 ~~e~~~~~--------~sLh~~-SHGEsf~~i~~~rf--~~~GiYiLDEPEa~LSp--~RQlella~l~~la~sGaQ~Ii 183 (233)
T COG3910 117 DGEANYGG--------RSLHHM-SHGESFLAIFHNRF--NGQGIYILDEPEAALSP--SRQLELLAILRDLADSGAQIII 183 (233)
T ss_pred hhhcccCC--------cchhhh-ccchHHHHHHHHHh--ccCceEEecCccccCCH--HHHHHHHHHHHHHHhcCCeEEE
Confidence 21111000 000001 01234455666666 66778899988763211 12221 12211 124799999
Q ss_pred EecCCCcCC---cceEEccC
Q 001918 590 STRLPRVMN---LEPLKLSY 606 (996)
Q Consensus 590 TTR~~~~~~---~~~~~v~~ 606 (996)
.|-.+.++. ..+|++..
T Consensus 184 ATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 184 ATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred EecChhheeCCCcEEEEEec
Confidence 999998743 36777654
No 347
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.89 E-value=0.21 Score=52.21 Aligned_cols=126 Identities=22% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccC-Ccccccchh--------
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENC-SDKSRIKSF-------- 534 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~-~~~~~~~~~-------- 534 (996)
.+++|.|..|.|||||.+.++...- ....+.++++....... .+...++...+.... ....-..+.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~----~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~ 111 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR----SFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH----hhhheEEEccCcccCCCCCcHHHHHHHHHHhcc
Confidence 4799999999999999999876541 34566666654322110 111112211111000 000000000
Q ss_pred hhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCC
Q 001918 535 EEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPR 595 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~ 595 (996)
-...+...-.+.+.| ..++-+|+||+...--+......+.+++... ..|..||++|.+..
T Consensus 112 LS~G~~qrv~laral-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALEL-VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHH-HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 001111222334444 4566788999987643332334555544321 13567888887754
No 348
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.87 E-value=0.096 Score=59.06 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNY 509 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l 509 (996)
+++...|-||+||||+|.+++-++......+.-|+.+.. ++.+.|
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhh
Confidence 589999999999999999999988877766777766555 555444
No 349
>PF13245 AAA_19: Part of AAA domain
Probab=93.86 E-value=0.12 Score=45.42 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC----CCEEEEEe
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQR----YKMVLWVG 499 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~----F~~v~wi~ 499 (996)
.+++.|.|++|.|||+++...+..+... -+.+..+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3578889999999996666665544321 34677774
No 350
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.088 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~ 488 (996)
|.|.|.+|.||||+|+.++.++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999983
No 351
>PRK08149 ATP synthase SpaL; Validated
Probab=93.85 E-value=0.18 Score=58.86 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE--eCcCccHHHHHHHHHHHcc-----CccCcccCCcccccchhhhcH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV--GGESRYIRQNYLNLWSFLD-----VDVGIENCSDKSRIKSFEEQE 538 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi--~~~~~~~~~~l~~La~~L~-----~~~~~~~~~~~~~~~~~~~~~ 538 (996)
.++|.|.+|.|||||...++.... -+.+++. ......+.+....+..... +.....+.+...+ ...
T Consensus 153 ~i~I~G~sG~GKTTLl~~i~~~~~--~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r-----~~a 225 (428)
T PRK08149 153 RMGIFASAGCGKTSLMNMLIEHSE--ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR-----CNA 225 (428)
T ss_pred EEEEECCCCCChhHHHHHHhcCCC--CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH-----HhH
Confidence 699999999999999988876432 2333322 2222244444333333211 1111100000000 011
Q ss_pred HHHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 539 EAAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 539 ~~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
......+.+++ ..++.+||++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12234455666 3689999999999754
No 352
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.51 Score=48.59 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
++.|.|+.|+|||||-+.++--.+..--.+.|=
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 789999999999999999987665554455555
No 353
>PRK06217 hypothetical protein; Validated
Probab=93.80 E-value=0.054 Score=56.13 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|.|.+|.||||||++++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998864
No 354
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.25 Score=57.78 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=68.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|+||.|||-||++++-+-.-.| |....+ .+.+.|. -.+...|+
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGS-EFdEm~V----------------------------GvGArRVR 386 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVPF----FYASGS-EFDEMFV----------------------------GVGARRVR 386 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCCe----Eecccc-chhhhhh----------------------------cccHHHHH
Confidence 89999999999999999886533222 221111 2222221 12234444
Q ss_pred HHH---hcCCCEEEEEcCCCCcccc-------cchHHHhhhc---cCCCC-CeEEEEE-ecCCC-c----C---Cc-ceE
Q 001918 547 KEL---MRNIPFLVIIDNLESEKDW-------WDDKLVMDLL---PRFGG-ETHIIIS-TRLPR-V----M---NL-EPL 602 (996)
Q Consensus 547 ~~L---~~~~r~LLVLDdvd~~~~~-------~~~~~L~~~l---p~~~~-gsrIIIT-TR~~~-~----~---~~-~~~ 602 (996)
+.+ ...-++.|.+|.+|....- +...-|.++| ..|.+ .+-|||- |.-+. + . .. ..+
T Consensus 387 dLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v 466 (752)
T KOG0734|consen 387 DLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHV 466 (752)
T ss_pred HHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeE
Confidence 444 3577899999999875321 1112233333 23322 3444443 33332 2 1 12 567
Q ss_pred EccCCCHHHHHHHHhhhcCCC
Q 001918 603 KLSYLSGVEAMSLMQGSVKDY 623 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~ 623 (996)
.|+..+..--.++|..+....
T Consensus 467 ~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 467 TVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred ecCCCCcccHHHHHHHHHhcC
Confidence 777777777777777777543
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.79 E-value=0.21 Score=54.33 Aligned_cols=124 Identities=16% Similarity=0.068 Sum_probs=65.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc------cHHHHHHHHHHHccCccCcccCCcccccchhhhcHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR------YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~------~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~ 539 (996)
++||+|.+|.|||||++.+..-.... .+.+++....- ...+-+.++....++...... +........+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQ 114 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQ 114 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchh
Confidence 79999999999999999988654433 34555543321 122233344444443321100 0000001112
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccC--CCCCeEEEEEecCCCc
Q 001918 540 AAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPR--FGGETHIIISTRLPRV 596 (996)
Q Consensus 540 ~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~--~~~gsrIIITTR~~~~ 596 (996)
...-.|.+.| .-++-|||+|...+..+.--..++..++.. ...|-..|..|-|-.+
T Consensus 115 rQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v 172 (268)
T COG4608 115 RQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV 172 (268)
T ss_pred hhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh
Confidence 2233455566 688899999997765332122455555432 1125566666766444
No 356
>PRK05922 type III secretion system ATPase; Validated
Probab=93.76 E-value=0.23 Score=58.16 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=48.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEE-EEeCcCccHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVL-WVGGESRYIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~-wi~~~~~~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.++|.|..|+|||||.+.++..... ..+++ .+.-....+..-+......+..... .....+...... .......
T Consensus 159 rigI~G~nG~GKSTLL~~Ia~~~~~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r--~~a~~~a 235 (434)
T PRK05922 159 RIGVFSEPGSGKSSLLSTIAKGSKS-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTK--VIAGRAA 235 (434)
T ss_pred EEEEECCCCCChHHHHHHHhccCCC-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHH--HHHHHHH
Confidence 5999999999999999888865432 22333 3321122443333333222221110 000000000000 0111223
Q ss_pred HHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 543 CRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 543 ~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
-.+.+++ ..++.+||++||+...
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 4456666 3689999999999764
No 357
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.75 E-value=0.33 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999998864
No 358
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.75 E-value=0.062 Score=55.21 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
++|.|.|++|.||||+|+++..+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 37999999999999999999887543
No 359
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.74 E-value=0.18 Score=56.56 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC
Q 001918 553 IPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL 593 (996)
Q Consensus 553 ~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~ 593 (996)
.+-+||+|.+.++ .+.++..++-..|.|++|+.|---
T Consensus 351 ~~~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 351 PDSFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred ccceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcCCH
Confidence 4579999999987 568999999998999999998643
No 360
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.74 E-value=0.058 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998775
No 361
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.73 E-value=0.14 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~ 486 (996)
++++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999875
No 362
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.73 E-value=0.072 Score=55.83 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDV 518 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~ 518 (996)
-||+|+|++|.|||||.+.+ +.+..-=.+.+|++.........+..+.+..|.
T Consensus 29 evv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred CEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 48999999999999999975 333333358899976433111144444444444
No 363
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.71 E-value=0.31 Score=57.76 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCChhHHHH-HHHHHHhcCCCE-EEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhh
Q 001918 463 GKGIACVTGDSGIGKTELLL-EFAYRYHQRYKM-VLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEE 536 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~-~~~~~~~~~F~~-v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~ 536 (996)
|+ .++|.|..|+|||+||. .++++. .-+. ++++-...+ .+.+.+..+...=.+... .....+......+
T Consensus 162 GQ-R~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~-- 236 (497)
T TIGR03324 162 GQ-RELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY-- 236 (497)
T ss_pred CC-EEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH--
Confidence 44 49999999999999985 566653 3343 556554444 555555444432111110 0000000000000
Q ss_pred cHHHHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 537 QEEAAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
...-....+-+++ .+++.+|||+||+...
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 0111223455666 3689999999999853
No 364
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.71 E-value=0.26 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|+|||||.+.++..+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999988754
No 365
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.70 E-value=0.42 Score=52.69 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCcc--HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRY--IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~--~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.+++++|.+|+||||++..++..+..+-..+.++.++... ....+...+..++.+.... .+..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~------------~~~~~l~ 143 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV------------RDEAAMT 143 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec------------CCHHHHH
Confidence 4799999999999999999998876554567788766432 2233334444444432211 1223333
Q ss_pred HHHHHHHhc-CCCEEEEEcCCCCc
Q 001918 543 CRVRKELMR-NIPFLVIIDNLESE 565 (996)
Q Consensus 543 ~~l~~~L~~-~~r~LLVLDdvd~~ 565 (996)
. ..+.+.. .+.-++|+|..-..
T Consensus 144 ~-~l~~l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 144 R-ALTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred H-HHHHHHhcCCCCEEEEECCCCC
Confidence 2 2333422 35678899988654
No 366
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.67 E-value=0.16 Score=60.58 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=50.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCccHHHHHHHHHHHcc---Cc-cCcccCCcccccchhhhcHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESRYIRQNYLNLWSFLD---VD-VGIENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~~~~~~l~~La~~L~---~~-~~~~~~~~~~~~~~~~~~~~~ 540 (996)
.++|+|.+|+|||||+..+++.+...+ +..+++-+..+...+ ...+.+.+. +. ....+. ........
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE-Vtdm~rsVkgeVVasT~D~p~-------~~~~~~a~ 489 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE-VTDMQRSVKGEVIASTFDRPP-------SDHTTVAE 489 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh-HHHHHHhccceEEEECCCCCH-------HHHHHHHH
Confidence 489999999999999999999876544 344444433331111 122333331 10 111110 00001222
Q ss_pred HHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 541 AICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
..-.+-++| ..++.|||+||++...
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 333345555 5789999999999754
No 367
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.64 E-value=0.11 Score=52.80 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|-++|++|.||||||.++..++....-.++-++++
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGD 60 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecCh
Confidence 4789999999999999999999999888888888754
No 368
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.63 E-value=0.23 Score=50.47 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001918 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
.++.++.++|..+...|++++|...+.+++...++.+|.+|+.+..+...|+.+.+
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 35667777888888999999999999999999999999999877766666666543
No 369
>PRK05973 replicative DNA helicase; Provisional
Probab=93.62 E-value=0.12 Score=55.83 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=31.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
++.|.|.+|+|||++|.+++.....+-..++|++.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 7999999999999999999987765566777886554
No 370
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.60 E-value=0.37 Score=51.61 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+++|.|..|.|||||++.++..+. ...+.+|+
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~ 81 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTV 81 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 4799999999999999999887432 22344444
No 371
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.18 Score=50.69 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+++|.|..|.|||||.+.++..+. ...+.++++....... ....+...++...+ .. ..+...-.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~-~~~~~~~~i~~~~q-lS------------~G~~~r~~ 90 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKL-PLEELRRRIGYVPQ-LS------------GGQRQRVA 90 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccC-CHHHHHhceEEEee-CC------------HHHHHHHH
Confidence 4799999999999999999887543 3567777765422100 01112222222211 00 11222233
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC-CCCeEEEEEecCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF-GGETHIIISTRLPRV 596 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~-~~gsrIIITTR~~~~ 596 (996)
+...+ ...+-+++||....--+......+.+.+... ..+..||++|.+...
T Consensus 91 l~~~l-~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 91 LARAL-LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred HHHHH-hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 44444 4567889999987643322234444444321 124578888876443
No 372
>PRK01184 hypothetical protein; Provisional
Probab=93.58 E-value=0.27 Score=50.73 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
+|+|+|++|.||||+|+ ++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 69999999999999987 4443
No 373
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.58 E-value=0.051 Score=56.02 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
||.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998876
No 374
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.58 E-value=0.24 Score=61.09 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..++|+|..|.|||||++-+...+ . ..+.+.++.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g 410 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKING 410 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECC
Confidence 479999999999999999987755 2 355555543
No 375
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.57 E-value=0.3 Score=59.34 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
..|+|+|+.|.|||||++.+..-+ ....+.+.++
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~ 395 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLD 395 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEEC
Confidence 479999999999999999887432 2334444443
No 376
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.57 E-value=0.29 Score=57.74 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEE-EEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMV-LWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQ 537 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v-~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~ 537 (996)
|+ .++|.|..|+|||+||.....+.+ +-+.+ +++-...+ .+.+.+..+...=.+... .....+......+ -
T Consensus 141 GQ-R~~I~g~~g~GKt~Lal~~I~~q~-~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~--~ 216 (485)
T CHL00059 141 GQ-RELIIGDRQTGKTAVATDTILNQK-GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY--L 216 (485)
T ss_pred CC-EEEeecCCCCCHHHHHHHHHHhcc-cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH--H
Confidence 44 489999999999999775333322 33544 45544433 454554444332111100 0000000000000 0
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
..-....+.++++ +++.+|||+||+...
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 0011234555663 578999999999864
No 377
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.54 E-value=0.33 Score=57.97 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCChhHHHHH-HHHHHhcCCCEE-EEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhh
Q 001918 463 GKGIACVTGDSGIGKTELLLE-FAYRYHQRYKMV-LWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEE 536 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~-~~~~~~~~F~~v-~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~ 536 (996)
|+ .++|.|..|+|||+||.. ++++ . +.+.+ +++-...+ .+.+.+..+...=.+... .....+......+
T Consensus 161 GQ-r~~I~g~~g~GKt~Lal~~i~~~-~-~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~-- 235 (501)
T TIGR00962 161 GQ-RELIIGDRQTGKTAVAIDTIINQ-K-DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY-- 235 (501)
T ss_pred CC-EEEeecCCCCCccHHHHHHHHhh-c-CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH--
Confidence 44 499999999999999754 4443 2 34553 66665544 455555444432111100 0000000000000
Q ss_pred cHHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001918 537 QEEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
-..-....+.++++ +++.+|||+||+...
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 01112334556663 578999999999864
No 378
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.53 E-value=0.065 Score=60.95 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=35.2
Q ss_pred hccccchHhhhhhhhcCCCCcccccccc-ccCceEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKI-LYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~-~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+++|.+..+.++.. .++..... ....++++|+|++|.||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~------~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVN------YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHH------HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57888888877663 11000000 012358999999999999999999987644
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.53 E-value=0.15 Score=53.63 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~ 501 (996)
.+++|.|..|.|||||.+.++-... ....+.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~ 64 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE 64 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCE
Confidence 3899999999999999999876531 223455666543
No 380
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.51 E-value=0.17 Score=42.96 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001918 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
|..+.++|..+...|+|++|+..|.+++.+ .++|+. ...++|.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~---~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAE---AYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhC
Confidence 567789999999999999999999999997 455655 5599999998877
No 381
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.26 Score=57.80 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~ 540 (996)
..++|.|..|+|||||+..++..... +.+++.-...+ .+.+.+.+....-++... .....+...... .....
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r--~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR--RQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHH--HHHHH
Confidence 36999999999999999988865432 34444433333 444433222111111110 000000000000 01112
Q ss_pred HHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 541 AICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
..-.+.+++ ..++.+||++||+...
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 233455666 3689999999999753
No 382
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.47 E-value=0.38 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|..|.|||||.+.++-.. ....+.++++
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~ 64 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILID 64 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEEC
Confidence 389999999999999999987642 2233444443
No 383
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.46 E-value=0.06 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
||.|.|++|.||||+|+.++.++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998863
No 384
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.44 E-value=0.11 Score=59.48 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
++|.|.|+.|.||||+...+...+.......++.--. . +...+.. .......... ..+.......
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd-p-~E~~~~~---~~~~i~q~ev----------g~~~~~~~~~ 187 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED-P-IEYVHRN---KRSLINQREV----------GLDTLSFANA 187 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC-C-hhhhccC---ccceEEcccc----------CCCCcCHHHH
Confidence 5799999999999999999988776555444433211 1 1100000 0000000000 0011234556
Q ss_pred HHHHHhcCCCEEEEEcCCCCc
Q 001918 545 VRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~ 565 (996)
++..| +..+=.|++|.+.+.
T Consensus 188 l~~~l-r~~pd~i~vgEird~ 207 (343)
T TIGR01420 188 LRAAL-REDPDVILIGEMRDL 207 (343)
T ss_pred HHHhh-ccCCCEEEEeCCCCH
Confidence 77778 778888999999865
No 385
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.41 E-value=0.067 Score=56.61 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||||+.++..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999988764
No 386
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.44 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
+++|.|+.|.|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998864
No 387
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.37 E-value=0.094 Score=56.13 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~ 502 (996)
+|||.|.+|.||||||+.++..+... -..+..|+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~ 39 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDG 39 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCc
Confidence 48999999999999999999887631 12355555443
No 388
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.30 E-value=0.54 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++-.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 389
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=93.28 E-value=0.37 Score=57.34 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCChhHHHHH-HHHHHhcCCCEE-EEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhh
Q 001918 463 GKGIACVTGDSGIGKTELLLE-FAYRYHQRYKMV-LWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEE 536 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~-~~~~~~~~F~~v-~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~ 536 (996)
|+ .++|.|..|+|||+||.. +.++ + .-+.+ +++-...+ .+.+.+..+...=.+... ............+
T Consensus 162 GQ-R~~I~g~~g~GKt~Lal~~i~~~-~-~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~-- 236 (502)
T PRK13343 162 GQ-RELIIGDRQTGKTAIAIDAIINQ-K-DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY-- 236 (502)
T ss_pred CC-EEEeeCCCCCCccHHHHHHHHhh-c-CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH--
Confidence 44 489999999999999754 4443 2 33443 55554444 455554444332111100 0000000000000
Q ss_pred cHHHHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 537 QEEAAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
...-....+-+++ .+++.+|||+||+...
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 237 LAPFAGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 0001122345566 3689999999999864
No 390
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.27 E-value=0.48 Score=50.59 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCC--CCCeEEEEEecCCCcCCc--ceEEcc
Q 001918 540 AAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRF--GGETHIIISTRLPRVMNL--EPLKLS 605 (996)
Q Consensus 540 ~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~--~~gsrIIITTR~~~~~~~--~~~~v~ 605 (996)
...-+|.+.| -..+-+|+.|.=.-.-+.-..+.+.+++... ..|..||+.|-|..++.. +++.+.
T Consensus 148 qQRVAIARAL-~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 148 QQRVAIARAL-INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred HHHHHHHHHH-hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 3344566666 6777888888643221111235565655432 236789999999887543 455443
No 391
>PTZ00494 tuzin-like protein; Provisional
Probab=93.25 E-value=2.9 Score=48.49 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=92.2
Q ss_pred CccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHH
Q 001918 428 SEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507 (996)
Q Consensus 428 ~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~ 507 (996)
+.....||.|+.|-..++. ..+... ....+|+++.|.-|.||++|.+....+ .--..+|++.... ++
T Consensus 367 ~a~~~~~V~R~~eE~~vRq-------vL~qld-~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VDVRg~--ED 433 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRS-------VLTQMA-PSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVDVGGT--ED 433 (664)
T ss_pred ccccccccchhhHHHHHHH-------HHhhcc-CCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEEecCC--cc
Confidence 3445678888888776662 111111 124579999999999999999976543 3345677776543 23
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEE--cCCCCcccccchHHHhhhccCCCCCe
Q 001918 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVII--DNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVL--Ddvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
.+..+-+.|+.+.-. .+ +....+ ..+.....+... .++.-|||| -.-.++.-.+ .....+.... .-|
T Consensus 434 tLrsVVKALgV~nve-~C---GDlLdF---I~ea~~~A~~~~-~g~~P~lVlkLREGssL~RVY--nE~vaLacDr-RlC 502 (664)
T PTZ00494 434 TLRSVVRALGVSNVE-VC---GDLLGF---VEEAMRGATVKA-SDGVPFLVMRLREGSDLGRVY--GEVVSLVSDC-QAC 502 (664)
T ss_pred hHHHHHHHhCCCChh-hh---ccHHHH---HHHHHHHHHHhc-CCCCCEEEEEeccCCcHHHHH--HHHHHHHccc-hhh
Confidence 455566778776432 11 101111 112222222223 445555554 3333221110 1111111111 257
Q ss_pred EEEEEe-------cCCCcCCcceEEccCCCHHHHHHHHhhhc
Q 001918 586 HIIIST-------RLPRVMNLEPLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 586 rIIITT-------R~~~~~~~~~~~v~~L~~~EA~~Lf~~~a 620 (996)
+|++-- -+-.+.....|-|+.++..+|.++-....
T Consensus 503 Hvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 503 HIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred eeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 888743 33333455899999999999999887765
No 392
>PRK06547 hypothetical protein; Provisional
Probab=93.22 E-value=0.09 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
..+|+|.|++|.||||+|..++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998874
No 393
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.20 E-value=0.24 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+++|.|..|.|||||...++...
T Consensus 139 ~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 139 RMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999998877644
No 394
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.18 E-value=0.26 Score=57.66 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCc--ccCCcccccchhhhcHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGI--ENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~--~~~~~~~~~~~~~~~~~~~~ 542 (996)
.++|.|..|.|||||...++..... ..+++.+-.... .+.+.+......-++.... ....+...... .......
T Consensus 158 ri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r--~ra~~~a 234 (432)
T PRK06793 158 KIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ--LRAAKLA 234 (432)
T ss_pred EEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH--HHHHHHH
Confidence 6899999999999999988875533 234444433332 5555544333221211100 00000000000 0111223
Q ss_pred HHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 543 CRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 543 ~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
..+.+++ .+++++|||+|++...
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHH
Confidence 3455566 3689999999999864
No 395
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=1.3 Score=47.38 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=67.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHH-HccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWS-FLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
|.++|++|.|||-+|++.+.+....| ..|+. +|-.. -..++...+
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT~aTF-----------------LKLAgPQLVQM-----------------fIGdGAkLV 253 (424)
T KOG0652|consen 208 VLMYGPPGTGKTLMARACAAQTNATF-----------------LKLAGPQLVQM-----------------FIGDGAKLV 253 (424)
T ss_pred eEeeCCCCCcHHHHHHHHHHhccchH-----------------HHhcchHHHhh-----------------hhcchHHHH
Confidence 78999999999999999888754433 12211 11000 011234445
Q ss_pred HHHH---hcCCCEEEEEcCCCCccc-------ccchH---HHhhhc---cCCC--CCeEEEEEecCCCcCC--------c
Q 001918 546 RKEL---MRNIPFLVIIDNLESEKD-------WWDDK---LVMDLL---PRFG--GETHIIISTRLPRVMN--------L 599 (996)
Q Consensus 546 ~~~L---~~~~r~LLVLDdvd~~~~-------~~~~~---~L~~~l---p~~~--~gsrIIITTR~~~~~~--------~ 599 (996)
++.+ ....+.+|.+|.+|-... --+.+ .+.+++ ..|. ...+||-.|..-.+.. .
T Consensus 254 RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRL 333 (424)
T KOG0652|consen 254 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRL 333 (424)
T ss_pred HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccc
Confidence 5544 245678888898876411 00111 112222 2222 2567777776555421 2
Q ss_pred -ceEEccCCCHHHHHHHHhhhcC
Q 001918 600 -EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 600 -~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
+.++.+..+.+.-.++++-+..
T Consensus 334 DRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred cccccCCCCChHHHHHHHHHhhh
Confidence 5677777777666677776664
No 396
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.12 E-value=2.6 Score=47.57 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=32.9
Q ss_pred eEEccCCCHHHHHHHHhhhcCC----CCcccHHHHHHHHHHhCCChHHH
Q 001918 601 PLKLSYLSGVEAMSLMQGSVKD----YPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a~~----~~~~~~~~a~~iv~~lgglPLAL 645 (996)
.++|++++.+|+..|+..+... ....+....+++.-..+|+|--|
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988751 11334445666666669999644
No 397
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.11 E-value=0.43 Score=52.91 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+++|+|..|.|||||.+.++.-+. ..+.++++.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g 64 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDG 64 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECC
Confidence 3799999999999999999987653 356666654
No 398
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.11 E-value=0.69 Score=46.96 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001918 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
.+.++.++|.+|...|++++|.+++++++.+ +|+...+..+||.++..+|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--------~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALER--------NPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999987 2333344577777776554
No 399
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.10 E-value=0.1 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
||+|.|++|.||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 400
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.09 E-value=0.6 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|+|..|.|||||.+.++-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999998643
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.08 E-value=0.23 Score=58.12 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=49.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~~ 541 (996)
..++|.|..|+|||||...++.... ...+++.+..... .+.+.+......-++... .....+......+ .....
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~--~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRR--QAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHH--HHHHH
Confidence 3699999999999999987776443 2334444433333 444443322111111110 0000000000000 01112
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ .+++.+|||+||+...
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 33455666 3688999999999753
No 402
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.08 E-value=0.069 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
++.|+|++|.||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999988873
No 403
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.07 E-value=0.13 Score=46.14 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
++.+.|.+|+||||++..++..++..-..+..+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999999887632233333
No 404
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.02 E-value=0.08 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~ 488 (996)
|.|+|++|.||||||+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 405
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.02 E-value=0.77 Score=48.40 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|..|.|||||.+.++-... ...+.++++
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~ 68 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEID 68 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEEC
Confidence 3799999999999999999876432 223444443
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.01 E-value=0.15 Score=54.12 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH--------hcCCCEEEEEeCcCccHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY--------HQRYKMVLWVGGESRYIRQNYLNL 512 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~--------~~~F~~v~wi~~~~~~~~~~l~~L 512 (996)
+..|+|++|.|||+++..+...+ ...-..++++.-.+..+...+..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 58999999999999888888776 223346667653333444444333
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.01 E-value=0.28 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||.+.+.-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 589999999999999999987643
No 408
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.48 Score=50.96 Aligned_cols=24 Identities=38% Similarity=0.282 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|.|||||.+.++..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998754
No 409
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.90 E-value=0.089 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
|.|+|.+|+|||||.+.++..++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999988653
No 410
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.14 Score=54.32 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+=|.++|++|.|||.||+++++.....| |.... -.-.++.||... ..+..
T Consensus 190 rgvllygppg~gktml~kava~~t~a~f-----irvvg------sefvqkylgegp-------------------rmvrd 239 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVG------SEFVQKYLGEGP-------------------RMVRD 239 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchhe-----eeecc------HHHHHHHhccCc-------------------HHHHH
Confidence 3489999999999999999998765544 32211 111234444211 12222
Q ss_pred HHHHHhcCCCEEEEEcCCCCccc--c---c--ch---HHHhhhcc---CCC--CCeEEEEEecCCCcCC--------c-c
Q 001918 545 VRKELMRNIPFLVIIDNLESEKD--W---W--DD---KLVMDLLP---RFG--GETHIIISTRLPRVMN--------L-E 600 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~--~---~--~~---~~L~~~lp---~~~--~gsrIIITTR~~~~~~--------~-~ 600 (996)
+.+.-..+.+-+|.+|.+|.... + . +. ..|-+++. .|. ...+||..|....... . .
T Consensus 240 vfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldr 319 (408)
T KOG0727|consen 240 VFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR 319 (408)
T ss_pred HHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccc
Confidence 33322357788999999986421 0 0 11 12223332 222 2578888776544311 1 4
Q ss_pred eEEccCCCHHHHHHHHhhhc
Q 001918 601 PLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a 620 (996)
.++.+-.+..+-.-.|....
T Consensus 320 kiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 320 KIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cccCCCCchhhhhhhHHhhh
Confidence 56666555555555555554
No 411
>PRK13948 shikimate kinase; Provisional
Probab=92.84 E-value=0.092 Score=54.44 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
..|.|+||.|.||||+++.++.++..
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999999988743
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.83 E-value=0.29 Score=53.97 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++|.|.|..|.||||++..+...+...-..++.|....+.. +..+ .++.+ .. ........
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~---~~~~-~q~~v--~~-------------~~~~~~~~ 140 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ---IPGI-NQVQV--NE-------------KAGLTFAR 140 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec---CCCc-eEEEe--CC-------------cCCcCHHH
Confidence 358999999999999999998887654334566664322210 0000 00000 00 00113455
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEe
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIST 591 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITT 591 (996)
.++..| +..+=.|+++.+.+. +....++.... .++.++||
T Consensus 141 ~l~~~l-R~~PD~i~vgEiR~~------e~a~~~~~aa~-tGh~v~tT 180 (264)
T cd01129 141 GLRAIL-RQDPDIIMVGEIRDA------ETAEIAVQAAL-TGHLVLST 180 (264)
T ss_pred HHHHHh-ccCCCEEEeccCCCH------HHHHHHHHHHH-cCCcEEEE
Confidence 667777 777888899999875 33343332221 23456776
No 413
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.77 E-value=0.12 Score=54.55 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.+|||.|.+|.||||+|+.+...+....
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~ 36 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCc
Confidence 4899999999999999999999988663
No 414
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.76 E-value=0.092 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+++|.|++|+|||||++.++..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988754
No 415
>PRK13949 shikimate kinase; Provisional
Probab=92.75 E-value=0.089 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
|.|+|++|.|||||++.++..+.
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998875
No 416
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.69 E-value=0.64 Score=56.14 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=70.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC---C-----CEEEEEeCcCc------cHH------------HHHHHHHHHccCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQR---Y-----KMVLWVGGESR------YIR------------QNYLNLWSFLDVD 519 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~---F-----~~v~wi~~~~~------~~~------------~~l~~La~~L~~~ 519 (996)
.|+|+|+.|+|||||.+.++...... . -.+.|++-... ++. ..+..+...++..
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 69999999999999999997754332 0 11223321110 111 1112222222322
Q ss_pred cCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCcCC-
Q 001918 520 VGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRVMN- 598 (996)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~~~- 598 (996)
..... ..+... +.-+........+...++=|||||.=.+--+....+.|.+.|..+. +.||+.|-|+....
T Consensus 430 ~~~~~----~~v~~L--SGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 430 GEDQE----KPVGVL--SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDR 501 (530)
T ss_pred hHHHh----Cchhhc--CHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHh
Confidence 21110 001111 2222333333333367888999998766444433467777787764 56888888887632
Q ss_pred c--ceEEccC
Q 001918 599 L--EPLKLSY 606 (996)
Q Consensus 599 ~--~~~~v~~ 606 (996)
+ .++.+.+
T Consensus 502 va~~i~~~~~ 511 (530)
T COG0488 502 VATRIWLVED 511 (530)
T ss_pred hcceEEEEcC
Confidence 2 5565553
No 417
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.69 E-value=0.082 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
||+|.|.+|.||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998875
No 418
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.66 E-value=0.32 Score=56.89 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCcc--CcccCCcccccchhhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDV--GIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~--~~~~~~~~~~~~~~~~~~~~~ 541 (996)
..++|.|..|.|||||...++....... +++.+..... .+.+.+......-++.. -.....+..-... ......
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~~~~~~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r--~~~~~~ 214 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARNAKADI-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMR--LKAAFT 214 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCe-EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHH--HHHHHH
Confidence 3799999999999999988776543332 3444433333 44333332111111110 0000000000000 011122
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ ..++.+|||+||+...
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 215 ATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 34455666 3688999999999753
No 419
>PRK13946 shikimate kinase; Provisional
Probab=92.65 E-value=0.1 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
..|+|.|++|.||||+++.++.++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999999874
No 420
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.65 E-value=0.34 Score=56.81 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|.|||||+..+....
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhccc
Confidence 479999999999999998877643
No 421
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.64 E-value=0.2 Score=56.46 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+++.+.|-||+||||+|.+.+-....+-..++-++.+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 478999999999999999999988877667888866544
No 422
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.63 E-value=0.19 Score=49.79 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~ 502 (996)
+|+|+|..|.|||||++.+.+.+.. .+...+..+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7999999999999999999998874 466665666443
No 423
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.60 E-value=0.41 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|.|||||++.++-.+
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999988643
No 424
>PRK15453 phosphoribulokinase; Provisional
Probab=92.59 E-value=0.17 Score=55.76 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
..+|+|.|.+|.||||+|+.+++.+...-..+..+..+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~ 43 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS 43 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 358999999999999999999987755434566776554
No 425
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.57 E-value=0.72 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|..|.|||||.+.++..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999998864
No 426
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.57 E-value=0.36 Score=56.53 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=50.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEA 540 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~ 540 (996)
..++|.|..|.|||||...++..... +.+++.-+..+ .+.+.+......-++... .....+..-... .....
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R--~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMER--AKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCCC--CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHH--HHHHH
Confidence 36999999999999999988875433 44555544443 444433221111111100 000000000000 00111
Q ss_pred HHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 541 AICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 541 ~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
..-.+.+++ ..++.+||++|++...
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 223455666 3689999999999753
No 427
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.22 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|-||=|+||||||..+++++.
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 4799999999999999999999876
No 428
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.56 E-value=0.59 Score=55.39 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHH
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNL 512 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~L 512 (996)
|+ .++|.|.+|+|||+|+..++..+... -+.+++.-...+ .+.+.+..+
T Consensus 161 GQ-R~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~ 212 (494)
T CHL00060 161 GG-KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEM 212 (494)
T ss_pred CC-EEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHH
Confidence 44 49999999999999999998874432 266677765544 455555444
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.84 Score=49.91 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=79.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.++|++|.|||-||++++-.....| ++..+. .+ +.+-+| ..+.++..+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTF-----FSvSSS----DL--vSKWmG-------------------ESEkLVknL 217 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTF-----FSVSSS----DL--VSKWMG-------------------ESEKLVKNL 217 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCce-----EEeehH----HH--HHHHhc-------------------cHHHHHHHH
Confidence 489999999999999999987644322 222211 11 111222 223445555
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc---cchH---HHhh-hc------cCCCCCeEEEEEecCCCcCC------c-ceEEcc
Q 001918 546 RKELMRNIPFLVIIDNLESEKDW---WDDK---LVMD-LL------PRFGGETHIIISTRLPRVMN------L-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~---~~~~---~L~~-~l------p~~~~gsrIIITTR~~~~~~------~-~~~~v~ 605 (996)
.+.-+.+++-+|.+|.+|..-.- .+.+ .|.. +| .....|.-||-.|.-+-+.. . ..+-++
T Consensus 218 FemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 218 FEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred HHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceecc
Confidence 55555789999999999864110 0111 1211 21 12223555666665544321 1 344455
Q ss_pred CCCHHHHHHHHhhhcCCCCccc-HHHHHHHHHHhCCC
Q 001918 606 YLSGVEAMSLMQGSVKDYPITE-VDALRVIEEKVGRL 641 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~~-~~~a~~iv~~lggl 641 (996)
-.+...-..+|.-+.++.|... ....+++.+...|.
T Consensus 298 LPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 298 LPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred CCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 5555555678888888655332 22355666665554
No 430
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=92.51 E-value=0.54 Score=56.21 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEE-EEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMV-LWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQ 537 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v-~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~ 537 (996)
|+ .++|.|..|+|||+||.....+.. .-+.+ +++-...+ .+.+.+..+...=.+... .....+......+ -
T Consensus 162 GQ-r~~Ifg~~g~GKt~lal~~i~~~~-~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~--~ 237 (502)
T PRK09281 162 GQ-RELIIGDRQTGKTAIAIDTIINQK-GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY--L 237 (502)
T ss_pred Cc-EEEeecCCCCCchHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH--H
Confidence 44 489999999999999765333322 33443 56655444 444444444332111100 0000000000000 0
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001918 538 EEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
..-..-.+.++++ .++.+|||+||+...
T Consensus 238 a~~~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 238 APYAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCchHH
Confidence 1111234555663 579999999999864
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.49 E-value=0.22 Score=52.79 Aligned_cols=50 Identities=28% Similarity=0.290 Sum_probs=36.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCccHHHHHHHHHHHccCccC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESRYIRQNYLNLWSFLDVDVG 521 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~~~~~~l~~La~~L~~~~~ 521 (996)
.|+|+|-||+||||+|..++.++..+- ..++=|+++.. ..|..+||+..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd------~nL~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPD------SNLPEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCC------CChHHhcCCCCC
Confidence 489999999999999999888766553 45777776653 134566776653
No 432
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.48 E-value=0.093 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcC
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
|+|+|++|+|||||++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999998765444
No 433
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.46 E-value=0.52 Score=52.33 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|..|.|||||.+.++.-+. ...+.++++
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 67 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIID 67 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 4899999999999999999876432 223444443
No 434
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.45 E-value=0.1 Score=59.88 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCC---EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYK---MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~---~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
++|+|+|+.|.||||++..+...+....+ .++.+...-+.. +..+........+.... .+....
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~---~~~~~~~~~~v~Q~~v~----------~~~~~~ 201 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV---YDEIETISASVCQSEIP----------RHLNNF 201 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe---ccccccccceeeeeecc----------ccccCH
Confidence 58999999999999999999887754432 355553221111 11111111111000000 011234
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEe
Q 001918 542 ICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIST 591 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITT 591 (996)
...++..| +..+-.+++..+.+. +.+...+.... .++.++||
T Consensus 202 ~~~l~~aL-R~~Pd~i~vGEiRd~------et~~~al~aa~-tGh~v~tT 243 (358)
T TIGR02524 202 AAGVRNAL-RRKPHAILVGEARDA------ETISAALEAAL-TGHPVYTT 243 (358)
T ss_pred HHHHHHHh-ccCCCEEeeeeeCCH------HHHHHHHHHHH-cCCcEEEe
Confidence 56677788 778888888888765 44544443322 24557777
No 435
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.45 E-value=0.27 Score=57.62 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.++|.|..|.|||||...++...
T Consensus 157 rigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 157 RVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred EEEEECCCCCCccHHHHHhcCCC
Confidence 69999999999999998887644
No 436
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.43 E-value=0.56 Score=59.25 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|+|+.|.|||||++.+..-+
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 479999999999999999987643
No 437
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.42 E-value=0.44 Score=56.04 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
..++|.|..|.|||||...++....
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~~~ 170 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARGAS 170 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCCCC
Confidence 3689999999999999988887544
No 438
>PRK13768 GTPase; Provisional
Probab=92.41 E-value=0.17 Score=55.46 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
+++|+|+||+||||++..++..+...-..++.|+.+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 689999999999999999998877665567777654
No 439
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.41 E-value=0.35 Score=56.79 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=49.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHH-HHH----HccCccCcccCCcccccchhhhcHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLN-LWS----FLDVDVGIENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~-La~----~L~~~~~~~~~~~~~~~~~~~~~~~ 539 (996)
.++|.|..|.|||||+..++... ....+++++..... .+.+.... +.. ..+.....+.+. ...+ ...
T Consensus 167 ri~I~G~SGsGKTTLL~~Ia~l~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~----~~r~--~~~ 239 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARAD-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESP----MMRR--LAP 239 (450)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCH----HHHH--HHH
Confidence 69999999999999998776432 23346666644332 44332221 111 122222111110 0000 111
Q ss_pred HHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 540 AAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 540 ~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
...-.+.+++ .+++.+|||+||+...
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2233455566 3689999999999754
No 440
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.39 E-value=0.59 Score=55.27 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcC--C-C-EEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchh
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQR--Y-K-MVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSF 534 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--F-~-~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~ 534 (996)
|+ .++|.|-.|+|||+|+..+++....+ + + .++++-+..+ .+.+.+..+...=.+... .....+......
T Consensus 141 GQ-R~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R- 218 (458)
T TIGR01041 141 GQ-KLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER- 218 (458)
T ss_pred CC-EEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH-
Confidence 44 49999999999999999988865321 2 1 4556655444 455554444322111100 000000000000
Q ss_pred hhcHHHHHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001918 535 EEQEEAAICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
....-..-.+.++++ +++++||++||+...
T Consensus 219 -~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 -IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred -HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 011122344667774 578899999999753
No 441
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.36 E-value=0.71 Score=51.48 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=78.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc--cHH
Q 001918 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR--YIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~--~~~ 506 (996)
+-..|+|-.++...+.+ -+++. -......-|.|+|+.|.|||.|.-....+ .+.| +..+-+..... +-.
T Consensus 22 ~~~~l~g~~~~~~~l~~------~lkqt-~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSE------LLKQT-ILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDK 93 (408)
T ss_pred CCcceeehHHHHHHHHH------HHHHH-HHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhH
Confidence 34567887777776652 11111 00001123889999999999998766655 3344 33333333332 222
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-----cCCCEEEEEcCCCCcccccchHHHhhhcc--
Q 001918 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-----RNIPFLVIIDNLESEKDWWDDKLVMDLLP-- 579 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp-- 579 (996)
-.+..|.+++.+....... ...+..+....+...|. ...++.+|||.+|-...--..-.|-.++.
T Consensus 94 ~al~~I~rql~~e~~~~~k--------~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDis 165 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVK--------SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHHHhhhhe--------eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHH
Confidence 2455566655443321110 01133455556666662 24569999999886422101112333331
Q ss_pred --CCCCCeEEEEEecCCCc
Q 001918 580 --RFGGETHIIISTRLPRV 596 (996)
Q Consensus 580 --~~~~gsrIIITTR~~~~ 596 (996)
...|-+-|-+|||-..+
T Consensus 166 qs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 166 QSARAPICIIGVTTRLDIL 184 (408)
T ss_pred hhcCCCeEEEEeeccccHH
Confidence 12346778889987543
No 442
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.32 E-value=0.28 Score=35.40 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 001918 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRT 963 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~ 963 (996)
|.++..+|.+|...|++++|.+.+++++++..
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35677899999999999999999999999864
No 443
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.31 E-value=0.76 Score=52.12 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=33.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNL 512 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~L 512 (996)
.++|.|..|+|||+|+.++++.. +-+.++++-+..+ .+.+.+.++
T Consensus 159 r~~I~G~~G~GKT~L~~~Iak~~--~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 159 TAAIPGPFGCGKTVIQQSLSKYS--NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred EEEEECCCCCChHHHHHHHHhCC--CCCEEEEEEeCCChHHHHHHHHHH
Confidence 59999999999999999988752 3356778877655 455555443
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.31 E-value=0.17 Score=63.95 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH-HhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR-YHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~-~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+++|+|+.|.|||||.+.+.-. +..+ ..+++.+........+..+-..++..... ...+. .......
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~~~i~~~~si-----~~~LS----tfS~~m~ 391 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIFADIGDEQSI-----EQNLS----TFSGHMK 391 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhheeeecChHhHH-----hhhhh----HHHHHHH
Confidence 57999999999999999998765 1111 11233322110000111111111110000 00000 1112223
Q ss_pred HHHHHHh-cCCCEEEEEcCCCCcccccchHHHh-hhccC-CCCCeEEEEEecCCCcCC-------cceEEccCCCHHHHH
Q 001918 544 RVRKELM-RNIPFLVIIDNLESEKDWWDDKLVM-DLLPR-FGGETHIIISTRLPRVMN-------LEPLKLSYLSGVEAM 613 (996)
Q Consensus 544 ~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~-~~lp~-~~~gsrIIITTR~~~~~~-------~~~~~v~~L~~~EA~ 613 (996)
.+...+. ...+-|++||..-.-.+..+...+. .++.. ...|+.+||||.+..+.. +....|. ++. +.+
T Consensus 392 ~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l 469 (771)
T TIGR01069 392 NISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETL 469 (771)
T ss_pred HHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCC
Confidence 3334442 2578999999987643322222331 22221 113688999998866511 1111111 111 111
Q ss_pred HHHhhhc-CCCCcccHHHHHHHHHHhCCChHHHHHHHH-HHhcCCCCHHHHHHHHhc
Q 001918 614 SLMQGSV-KDYPITEVDALRVIEEKVGRLTMGLAVVGA-ILSELPINPSRLLDTINR 668 (996)
Q Consensus 614 ~Lf~~~a-~~~~~~~~~~a~~iv~~lgglPLAL~~~gs-~L~~~~~s~~e~l~~L~~ 668 (996)
. +.... .+.+. ...+-.|++.+ |+|-.|-.-|. ++......++++++.|.+
T Consensus 470 ~-p~Ykl~~G~~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 470 S-PTYKLLKGIPG--ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred c-eEEEECCCCCC--CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 11111 12221 12255677766 56665554444 444444578888888866
No 445
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.31 E-value=0.46 Score=59.33 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhc-cCCCCCeEEEEEecCCCcCCc
Q 001918 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLL-PRFGGETHIIISTRLPRVMNL 599 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~l-p~~~~gsrIIITTR~~~~~~~ 599 (996)
.+.+.| -.++-+||||...+.-|-.....+.+.+ ....+.+.|+||=|...+...
T Consensus 619 alARaL-l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 619 ALARAL-LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHHHHh-ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhc
Confidence 344445 5788889999987643321223444443 334457888888888766544
No 446
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.30 E-value=0.19 Score=55.63 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+|.|=||+||||++..++.-+..+-..++-|+++..
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 58999999999999999999988766556888877654
No 447
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.29 E-value=0.18 Score=50.40 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=28.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
|++.|.+|+||||++..++..+...-..+.++.++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 78999999999999999999877665566666655
No 448
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.28 E-value=0.37 Score=56.71 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~~~ 541 (996)
..++|.|..|.|||||...++...... .+++++..... .+.+....+...-++... .....+....... .....
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~d-~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~--~a~~~ 240 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCD-VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERA--KAAYV 240 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC-eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH--HHHHH
Confidence 379999999999999999887643322 34555444433 444433333222111110 0000000000000 01112
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ .+++.+|||+||+...
T Consensus 241 a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 241 ATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 23455566 3688999999999753
No 449
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.19 E-value=0.12 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
-|.++||.|.||||+.+.++.++.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 389999999999999999999987776
No 450
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.19 E-value=0.65 Score=38.87 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCH
Q 001918 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHP 971 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHp 971 (996)
-..++..+|.++..+|++++|..+|++++++ .|+||
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~P~~p 65 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALEL-----DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCC
Confidence 4567778999999999999999999999985 45554
No 451
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.19 E-value=0.49 Score=52.36 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=39.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh------c-C---CCEEEEEeCcCc--cHHHHHHHHHHHccCccC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH------Q-R---YKMVLWVGGESR--YIRQNYLNLWSFLDVDVG 521 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~------~-~---F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~ 521 (996)
++.|+|.||+|||||+..++--+. . . =..+++|+++.. ++.+-+..+...+++...
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 356679999999999988765322 1 1 126889988754 677777777788877643
No 452
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.17 E-value=0.82 Score=54.22 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCChhHHHH-HHHHHHh-------cCCCEEEEEeCcCc--cHHHHHHHHHHHcc-CccCc--ccCCccc
Q 001918 463 GKGIACVTGDSGIGKTELLL-EFAYRYH-------QRYKMVLWVGGESR--YIRQNYLNLWSFLD-VDVGI--ENCSDKS 529 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~-~~~~~~~-------~~F~~v~wi~~~~~--~~~~~l~~La~~L~-~~~~~--~~~~~~~ 529 (996)
|+ .++|.|-.|+|||+||. .++++.. .+-..++++-...+ .+.+....|.+ -+ +.... .......
T Consensus 189 GQ-R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e-~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 189 GQ-RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRS-YGALRYTTVMAATAAEP 266 (574)
T ss_pred CC-EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHh-cCCccceEEEEECCCCC
Confidence 44 48999999999999984 4566531 13345667765544 44442222322 22 11100 0000000
Q ss_pred ccchhhhcHHHHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 530 RIKSFEEQEEAAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 530 ~~~~~~~~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
....+ -.--..-.+-+++ .+++.+|||+||+...
T Consensus 267 ~~~r~--~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQY--LAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 00000 0001123445555 3689999999999763
No 453
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.17 E-value=0.095 Score=53.00 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
|+|+|++|.||||+|+.++.++. ..|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCc
Confidence 46899999999999999988763 4566543
No 454
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=1.5 Score=52.93 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=92.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-+.++|++|+|||-|+++++++...+ .+-+++ .+.+ ...++. ........+
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~---~~~i~~-----peli---~k~~gE------------------te~~LR~~f 270 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAF---LFLING-----PELI---SKFPGE------------------TESNLRKAF 270 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCce---eEeccc-----HHHH---Hhcccc------------------hHHHHHHHH
Confidence 47899999999999999999986521 122221 1111 111111 122233334
Q ss_pred HHHHhcCC-CEEEEEcCCCCccc--c----cc---hHHHhhhccCCCC--CeEEEEEecCCCcC-------Cc-ceEEcc
Q 001918 546 RKELMRNI-PFLVIIDNLESEKD--W----WD---DKLVMDLLPRFGG--ETHIIISTRLPRVM-------NL-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~-r~LLVLDdvd~~~~--~----~~---~~~L~~~lp~~~~--gsrIIITTR~~~~~-------~~-~~~~v~ 605 (996)
.+.. +.+ +.+|.+|+++.+-- . .+ ..++..++.+.++ +.-||-||+.+.-. .. +-+++.
T Consensus 271 ~~a~-k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~Ig 349 (693)
T KOG0730|consen 271 AEAL-KFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIG 349 (693)
T ss_pred HHHh-ccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeec
Confidence 4444 566 88888888876420 0 00 1244555544332 34445566665442 12 567888
Q ss_pred CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh---HHHHHHHHHHhcCCCCHHHHHHHHhc
Q 001918 606 YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT---MGLAVVGAILSELPINPSRLLDTINR 668 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP---LAL~~~gs~L~~~~~s~~e~l~~L~~ 668 (996)
-.+..+-+++++.+....+.........++..+.|.- |+--.-.+.+.....+.+.+...+..
T Consensus 350 iP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~ 415 (693)
T KOG0730|consen 350 IPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMG 415 (693)
T ss_pred CCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 8888888888887776433222233556777777665 44333333333222244455555544
No 455
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.14 E-value=0.43 Score=56.21 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHH------HHHHccCcc-CcccCCcccccchhhh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLN------LWSFLDVDV-GIENCSDKSRIKSFEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~------La~~L~~~~-~~~~~~~~~~~~~~~~ 536 (996)
.+++|.|..|.|||||+..++..... ..+++++..... .+.+.+.. +.+...... ...+. +..+
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~-----~~r~-- 230 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA-----LMRI-- 230 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH-----HHHH--
Confidence 47999999999999999887765432 335666644433 34333222 111111111 11110 0000
Q ss_pred cHHHHHHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 537 QEEAAICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
......-.+.+++ .+++.+|||+||+...
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 1112233455666 3689999999999763
No 456
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.12 E-value=0.53 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
..|+|+|..|.|||||++.+...
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999988754
No 457
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.11 E-value=0.23 Score=47.49 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
|++.|.||+||||++..++..+..+-..+.-++++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~ 38 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD 38 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCch
Confidence 7899999999999999999988776556777776653
No 458
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.09 E-value=0.14 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|.|.|++|+||||+|..++.++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999884
No 459
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.08 E-value=0.47 Score=48.32 Aligned_cols=52 Identities=21% Similarity=0.023 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH-HhcC-CCEEEEEeCcCccHHHHHHHHHHHc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR-YHQR-YKMVLWVGGESRYIRQNYLNLWSFL 516 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~-~~~~-F~~v~wi~~~~~~~~~~l~~La~~L 516 (996)
..+.|.|..|.|||+.+..++.+ +... -..++++........+....+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 36899999999999966555554 3333 2456777432222333444444433
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=92.07 E-value=0.12 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|+.|.||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998863
No 461
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.06 E-value=0.63 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|+|..|.|||||.+.++--+
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999887653
No 462
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.04 E-value=0.16 Score=52.62 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
++|+|+|+.|+|||||+..+...+...|..++.-.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 47999999999999999999999888886554443
No 463
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.04 E-value=0.88 Score=50.51 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
+..+|.|.|.+|.|||||...+...+..... +..+..+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~-~~VI~gD 140 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVP-CAVIEGD 140 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCC-EEEECCC
Confidence 4568999999999999999999998877653 4444443
No 464
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.02 E-value=0.64 Score=54.57 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
|+ .++|.|-+|+|||||+..++++..
T Consensus 141 GQ-RigIfagsGvGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 141 GQ-KIPIFSAAGLPHNEIAAQICRQAG 166 (466)
T ss_pred CC-eeeeecCCCCCHHHHHHHHHHhhc
Confidence 44 489999999999999999887654
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.00 E-value=0.39 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.++|.|..|.|||||...++...
T Consensus 165 ~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 165 RIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999998877654
No 466
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.99 E-value=0.28 Score=56.42 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=55.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001918 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
+=|||..|.|||.|.-.+|+.+..+-...+ ...+-+..+.+.|....+. .+.+..+.
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~-------HFh~Fm~~vh~~l~~~~~~----------------~~~l~~va 121 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKRRV-------HFHEFMLDVHSRLHQLRGQ----------------DDPLPQVA 121 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCccccccc-------cccHHHHHHHHHHHHHhCC----------------CccHHHHH
Confidence 789999999999999999986543211111 1112333333333211111 12244555
Q ss_pred HHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 547 KELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
+.+ .++..||.||.+.-. +.-|+-.|..++...-..+-|||+|-|...
T Consensus 122 ~~l-~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 122 DEL-AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPP 169 (362)
T ss_pred HHH-HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCCh
Confidence 666 677789999986532 111233445554431124456666666443
No 467
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.94 Score=55.43 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=33.0
Q ss_pred ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001918 600 EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 600 ~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
+.++++.|+++|-+++|++++...+-......+.+++++.|.-.
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCH
Confidence 78999999999999999999875554433445566776666543
No 468
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.96 E-value=0.89 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|..|.|||||.+.++-.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999988643
No 469
>PRK14530 adenylate kinase; Provisional
Probab=91.95 E-value=0.14 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 470
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.93 E-value=0.87 Score=49.88 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~ 503 (996)
.++.|-|.+|+|||++|..++..+..+ -..++|++.+-.
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~ 59 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS 59 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence 479999999999999999999987765 378999976643
No 471
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.93 E-value=0.22 Score=61.30 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=54.0
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCccHHH
Q 001918 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESRYIRQ 507 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~~~~~ 507 (996)
..-..++|.+..+..+.. .. ...+.+.|+|.+|+||||+|+.++..+-. .++.++|+.+.......
T Consensus 28 ~~~~~vigq~~a~~~L~~------~~-------~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~~~~~ 94 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKK------AA-------KQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNP 94 (637)
T ss_pred ccHHHcCChHHHHHHHHH------HH-------HhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCcchHH
Confidence 344567887777776652 00 01135899999999999999999987654 35788899875556666
Q ss_pred HHHHHHHHccCc
Q 001918 508 NYLNLWSFLDVD 519 (996)
Q Consensus 508 ~l~~La~~L~~~ 519 (996)
.+..+...+|..
T Consensus 95 ~~~~v~~~~G~~ 106 (637)
T PRK13765 95 KIRTVPAGKGKQ 106 (637)
T ss_pred HHHHHHHhcCHH
Confidence 666666555543
No 472
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.92 E-value=0.52 Score=57.41 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
..++|....++++.+...... ....-|.|+|..|+|||++|+.+.+.-...-...+.|+|..
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a---------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA---------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA 257 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh---------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC
Confidence 467888888887763111000 01224899999999999999998875332333456666654
No 473
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.85 E-value=0.28 Score=37.07 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCC
Q 001918 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGED 969 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~d 969 (996)
.++..||.+-...++|++|.+=|+++|+++++++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3566799999999999999999999999999998764
No 474
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.84 E-value=1.1 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|+|+.|+|||||.+.+.-++
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCC
Confidence 59999999999999999887643
No 475
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.68 E-value=0.79 Score=56.63 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhc--CCCEEEEEeC
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQ--RYKMVLWVGG 500 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~--~F~~v~wi~~ 500 (996)
...+.+|.|+.|.|||||-..++.+... ...+.+.++.
T Consensus 55 ~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 55 PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 4458999999999999999999998765 4678888876
No 476
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.62 E-value=0.71 Score=54.36 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=47.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCc--ccCCcccccchhhhcHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGI--ENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~--~~~~~~~~~~~~~~~~~~~ 541 (996)
.++|.|..|.|||||+..++... +.+.+++...... .+......+...-++.... ....+......+ .....
T Consensus 170 rigI~G~sG~GKSTLl~~I~g~~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~--~a~~~ 245 (451)
T PRK05688 170 RLGLFAGTGVGKSVLLGMMTRFT--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL--RAAMY 245 (451)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH--HHHHH
Confidence 69999999999999998876532 2233333322222 3444333332222211100 000000000000 11122
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCCc
Q 001918 542 ICRVRKEL-MRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~L-~~~~r~LLVLDdvd~~ 565 (996)
.-.+.+++ .+++.+||++||+...
T Consensus 246 a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 246 CTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHCCCCEEEEecchhHH
Confidence 34456666 3689999999999753
No 477
>PRK13975 thymidylate kinase; Provisional
Probab=91.59 E-value=0.16 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+|+|.|+.|+||||+|+.++.++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7999999999999999999998864
No 478
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.59 E-value=0.24 Score=51.29 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|.|.+|.||||+|+.+...+...-..+.+++
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 48999999999999999999988754333455664
No 479
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.56 E-value=0.97 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||.+.++.-+
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998643
No 480
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.56 E-value=0.74 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.++||.|+.|.|||||.+.++..+..
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 48999999999999999999886543
No 481
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.52 E-value=0.85 Score=45.28 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCCc
Q 001918 869 FITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQF 948 (996)
Q Consensus 869 ~~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr~ 948 (996)
+...+......+.+..+...+..+...... ...++.++|.++...|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------------------------~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW--------------------------------SWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------------cHHHHHHHHHHHHHHhhH
Q ss_pred hHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001918 949 DMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 949 ~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
++|...|+++++ +.++++++. .+||.++...|+
T Consensus 75 ~~A~~~y~~Al~-----l~p~~~~a~---~~lg~~l~~~g~ 107 (144)
T PRK15359 75 TTAINFYGHALM-----LDASHPEPV---YQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHHHHh-----cCCCCcHHH---HHHHHHHHHcCC
No 482
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.50 E-value=0.16 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|.|+|++|.||||+|+.++.++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998873
No 483
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.49 E-value=0.5 Score=58.28 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
..|+|+|..|.|||||++.+...+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 479999999999999999987643
No 484
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.48 E-value=0.44 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
+|+|.|+.|.||||+++.++..+...-..+..+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999999999886543333444
No 485
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.43 E-value=0.15 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFA 485 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~ 485 (996)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999877
No 486
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.43 E-value=0.49 Score=59.45 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=38.5
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++|+...+.++.+..... .....-|.|+|..|.|||+||+.+.+.-...-...+.++|..
T Consensus 377 ~liG~S~~~~~~~~~~~~~---------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV---------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred ceeecCHHHHHHHHHHHHH---------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 5778777777765311100 011224899999999999999998775433333556666554
No 487
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.43 E-value=0.24 Score=54.15 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
+|+|.|.+|.||||++..+...+...-..+..|..++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~ 37 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDS 37 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 4899999999999999999988765544566776554
No 488
>PRK13531 regulatory ATPase RavA; Provisional
Probab=91.38 E-value=0.16 Score=59.87 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=35.2
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc
Q 001918 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+..|+||+..++.+.. .+ ....-|.|.|++|+|||+||+.++.....
T Consensus 19 ~~~i~gre~vI~lll~------aa-------lag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLL------AA-------LSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHH------HH-------ccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 3468999998888762 11 11224899999999999999999987543
No 489
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=91.36 E-value=0.81 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++.-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 490
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.35 E-value=0.16 Score=52.63 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.|.+.|.||.||||+|++++..++++-..+.-+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 588999999999999999999888765444433
No 491
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.34 E-value=0.17 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|+.|.||||+|+.++.++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998875
No 492
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.32 E-value=0.31 Score=53.55 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+|.|-||+||||++..++.-+...-..++-|+++..
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 57777999999999999999988766567888988765
No 493
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.26 E-value=1 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001918 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
..|+|+|..|.|||||++.+...
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999998764
No 494
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.26 E-value=0.79 Score=57.94 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+++.|.|.+|.||||++..+...+...-..+.++
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 35899999999999999999987766543345555
No 495
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.25 E-value=1.3 Score=45.68 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001918 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.++-|+|++|.||||+.+-++...+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3899999999999999999987543
No 496
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.24 E-value=1 Score=56.84 Aligned_cols=116 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001918 464 KGIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.+++.|.|.+|.||||+++.+...+...- ...+++-+-+..... .|.+..+...... .+...+..+ ...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~---~L~e~~g~~a~Ti-----h~lL~~~~~--~~~ 407 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK---RLGEVTGLTASTI-----HRLLGYGPD--TFR 407 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH---HHHHhcCCccccH-----HHHhhccCC--ccc
Confidence 45899999999999999999988665432 133444333221111 2333333211000 000000000 000
Q ss_pred HHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001918 543 CRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 543 ~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
..... ....-+||+|.+.-+.. ..+..++.....+++||+.-=..++
T Consensus 408 ---~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 408 ---HNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDTDQL 455 (720)
T ss_pred ---hhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECccccc
Confidence 00010 12345999999987633 4555555544457888887544443
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.23 E-value=0.15 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001918 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|+|++|.|||||+..++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 79999999999999999998754
No 498
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=91.23 E-value=0.94 Score=53.71 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcC--C-C-EEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchh
Q 001918 463 GKGIACVTGDSGIGKTELLLEFAYRYHQR--Y-K-MVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSF 534 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--F-~-~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~ 534 (996)
|+ .++|.|-.|+|||+|+..+++....+ . + .++++-+..+ .+.+.+..+...=.+... .....+.....
T Consensus 143 GQ-R~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~-- 219 (460)
T PRK04196 143 GQ-KLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIE-- 219 (460)
T ss_pred CC-EEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHH--
Confidence 44 48999999999999999988764321 1 1 4556655444 555555444332111100 00000000000
Q ss_pred hhcHHHHHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001918 535 EEQEEAAICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
.....-..-.+.++++ +++++|||+||+...
T Consensus 220 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 220 RILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 0011122345667774 568999999999753
No 499
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.22 E-value=0.16 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|+|+.|.|||||++.++.++.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcC
Confidence 599999999999999999998764
No 500
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.21 E-value=0.27 Score=49.58 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=26.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001918 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
|++|+|+.|.|||||+..+...++.+--.+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 488999999999999999999887653234444
Done!