Query 001919
Match_columns 996
No_of_seqs 559 out of 3511
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.4E-46 4.9E-51 384.2 8.7 172 150-328 25-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.4E-45 1.2E-49 368.7 9.6 166 154-328 2-172 (176)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-31 9.3E-36 348.1 33.5 318 426-808 118-453 (1249)
4 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-30 5.6E-35 312.7 27.1 327 427-809 124-473 (549)
5 1z6t_A APAF-1, apoptotic prote 100.0 4.5E-30 1.6E-34 311.7 30.4 317 426-806 118-451 (591)
6 3h16_A TIR protein; bacteria T 100.0 1.4E-29 4.8E-34 253.3 7.8 113 155-271 15-132 (154)
7 1vt4_I APAF-1 related killer D 100.0 2.3E-27 7.8E-32 291.2 23.5 290 434-800 130-436 (1221)
8 3ub2_A TOLL/interleukin-1 rece 99.8 1.7E-22 5.7E-27 199.4 -0.3 100 155-257 5-111 (146)
9 1fyx_A TOLL-like receptor 2; b 99.8 6.1E-20 2.1E-24 182.1 2.1 97 157-256 2-108 (149)
10 2j67_A TOLL like receptor 10; 99.7 4.9E-19 1.7E-23 180.2 5.1 98 155-255 30-136 (178)
11 2js7_A Myeloid differentiation 99.7 2.6E-19 8.8E-24 179.5 1.8 96 157-255 13-117 (160)
12 1t3g_A X-linked interleukin-1 99.7 2.2E-18 7.4E-23 172.6 5.8 99 159-257 1-116 (159)
13 2qen_A Walker-type ATPase; unk 99.6 1.4E-13 4.6E-18 154.7 27.8 298 431-801 11-349 (350)
14 2fna_A Conserved hypothetical 99.5 4E-13 1.4E-17 151.1 24.4 301 431-801 12-357 (357)
15 1w5s_A Origin recognition comp 99.4 5.3E-12 1.8E-16 145.3 17.9 202 432-649 22-266 (412)
16 2qby_B CDC6 homolog 3, cell di 99.3 3.7E-10 1.3E-14 128.6 24.9 217 432-668 20-269 (384)
17 2v1u_A Cell division control p 99.2 5.1E-10 1.7E-14 127.2 24.1 193 432-642 19-242 (387)
18 2qby_A CDC6 homolog 1, cell di 99.2 7.4E-10 2.5E-14 125.7 24.4 195 432-644 20-240 (386)
19 1njg_A DNA polymerase III subu 99.2 7E-10 2.4E-14 116.7 19.1 200 430-652 21-231 (250)
20 3j0a_A TOLL-like receptor 5; m 99.2 2.6E-11 8.9E-16 153.0 8.4 98 157-257 667-776 (844)
21 1fnn_A CDC6P, cell division co 99.0 1.2E-08 4.1E-13 116.1 22.3 194 432-644 17-242 (389)
22 2chg_A Replication factor C sm 99.0 2.2E-08 7.5E-13 103.8 19.1 177 430-651 15-206 (226)
23 3qww_A SET and MYND domain-con 98.9 1.9E-09 6.4E-14 125.2 9.8 88 872-990 311-398 (433)
24 3n71_A Histone lysine methyltr 98.9 4.7E-09 1.6E-13 123.7 11.1 90 870-990 320-409 (490)
25 3n71_A Histone lysine methyltr 98.8 1.8E-08 6E-13 118.8 11.5 89 868-987 360-448 (490)
26 3qww_A SET and MYND domain-con 98.7 2.3E-08 7.9E-13 116.0 10.4 83 868-981 349-431 (433)
27 1sxj_B Activator 1 37 kDa subu 98.7 1.8E-07 6.2E-12 103.4 17.1 192 430-666 19-228 (323)
28 3qwp_A SET and MYND domain-con 98.7 3.6E-08 1.2E-12 114.4 11.6 89 868-987 338-426 (429)
29 3qwp_A SET and MYND domain-con 98.6 5.3E-08 1.8E-12 113.0 9.1 64 927-990 324-387 (429)
30 1jr3_A DNA polymerase III subu 98.5 6.2E-07 2.1E-11 101.4 15.3 195 432-649 16-221 (373)
31 1iqp_A RFCS; clamp loader, ext 98.5 1.2E-06 4.2E-11 96.9 15.3 175 431-649 24-212 (327)
32 1jbk_A CLPB protein; beta barr 98.3 2.3E-06 7.9E-11 86.2 11.9 148 431-616 21-194 (195)
33 1hqc_A RUVB; extended AAA-ATPa 98.3 3.6E-06 1.2E-10 93.3 14.4 176 431-652 11-214 (324)
34 3te6_A Regulatory protein SIR3 98.3 4.9E-06 1.7E-10 92.1 15.1 167 433-621 21-212 (318)
35 2chq_A Replication factor C sm 98.2 7.8E-06 2.7E-10 90.0 14.6 176 431-647 16-202 (319)
36 3bos_A Putative DNA replicatio 98.2 3.7E-06 1.3E-10 88.3 10.4 147 465-648 53-216 (242)
37 3h4m_A Proteasome-activating n 98.2 1.3E-05 4.4E-10 87.2 14.3 185 432-647 17-229 (285)
38 1a5t_A Delta prime, HOLB; zinc 98.1 4.9E-05 1.7E-09 85.0 16.6 167 465-645 25-201 (334)
39 1sxj_E Activator 1 40 kDa subu 98.1 2.7E-05 9.2E-10 87.4 13.9 198 431-645 13-233 (354)
40 2z4s_A Chromosomal replication 98.0 3.5E-05 1.2E-09 89.6 14.4 175 466-668 132-331 (440)
41 1sxj_A Activator 1 95 kDa subu 98.0 5.1E-05 1.8E-09 90.0 15.6 196 429-650 36-254 (516)
42 3eie_A Vacuolar protein sortin 98.0 0.00015 5.2E-09 80.5 18.3 186 432-649 18-228 (322)
43 3pvs_A Replication-associated 98.0 2.7E-05 9.3E-10 90.5 12.2 144 466-646 52-212 (447)
44 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00013 4.4E-09 78.0 16.3 154 465-648 40-221 (262)
45 1sxj_D Activator 1 41 kDa subu 97.9 6.6E-05 2.3E-09 83.9 14.2 185 430-645 35-231 (353)
46 3pfi_A Holliday junction ATP-d 97.9 3.7E-05 1.3E-09 85.7 11.1 173 430-648 27-226 (338)
47 3vfd_A Spastin; ATPase, microt 97.9 0.00029 9.9E-09 80.4 18.4 189 430-650 113-327 (389)
48 3u61_B DNA polymerase accessor 97.9 0.0001 3.4E-09 81.8 14.0 141 430-617 24-175 (324)
49 1l8q_A Chromosomal replication 97.9 0.0001 3.4E-09 81.9 13.7 147 466-643 39-202 (324)
50 3d8b_A Fidgetin-like protein 1 97.9 0.00036 1.2E-08 78.6 18.5 184 432-651 84-297 (357)
51 3uk6_A RUVB-like 2; hexameric 97.9 0.00022 7.6E-09 80.3 16.8 91 554-646 190-300 (368)
52 2p65_A Hypothetical protein PF 97.8 9.8E-05 3.3E-09 73.9 12.3 49 431-490 21-69 (187)
53 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00053 1.8E-08 76.2 18.9 157 466-651 47-225 (322)
54 1d2n_A N-ethylmaleimide-sensit 97.8 0.0002 7E-09 77.2 14.0 144 465-641 65-229 (272)
55 2qp9_X Vacuolar protein sortin 97.8 0.00024 8E-09 80.1 14.9 154 466-649 86-261 (355)
56 1qvr_A CLPB protein; coiled co 97.8 0.00045 1.5E-08 87.0 19.0 172 429-638 167-368 (854)
57 3syl_A Protein CBBX; photosynt 97.7 0.00013 4.4E-09 80.1 12.1 143 466-638 69-236 (309)
58 2w58_A DNAI, primosome compone 97.7 5E-05 1.7E-09 78.0 7.4 34 466-499 56-89 (202)
59 4b4t_J 26S protease regulatory 97.7 0.00016 5.6E-09 82.0 12.0 145 467-642 185-354 (405)
60 1sxj_C Activator 1 40 kDa subu 97.7 0.00043 1.5E-08 77.3 14.9 169 431-643 24-206 (340)
61 3ec2_A DNA replication protein 97.6 5.4E-05 1.8E-09 76.4 6.7 100 465-593 39-142 (180)
62 3b9p_A CG5977-PA, isoform A; A 97.6 0.0012 4E-08 72.1 17.7 186 432-649 21-233 (297)
63 2zan_A Vacuolar protein sortin 97.6 0.00036 1.2E-08 81.1 14.2 157 465-650 168-346 (444)
64 3cf0_A Transitional endoplasmi 97.6 0.00072 2.5E-08 74.2 14.6 150 465-644 50-223 (301)
65 4b4t_H 26S protease regulatory 97.5 0.00027 9.3E-09 81.3 11.0 147 466-642 245-415 (467)
66 4b4t_L 26S protease subunit RP 97.5 0.00023 7.7E-09 82.0 10.0 146 466-642 217-387 (437)
67 4b4t_I 26S protease regulatory 97.4 0.00036 1.2E-08 79.5 10.6 146 466-642 218-388 (437)
68 4b4t_M 26S protease regulatory 97.4 0.00022 7.7E-09 82.0 8.4 173 466-669 217-422 (434)
69 3pxg_A Negative regulator of g 97.4 0.00071 2.4E-08 79.1 12.0 144 430-621 178-339 (468)
70 1lv7_A FTSH; alpha/beta domain 97.3 0.001 3.5E-08 71.0 11.4 147 467-643 48-219 (257)
71 3n70_A Transport activator; si 97.3 0.00014 4.9E-09 70.8 4.1 47 433-488 2-48 (145)
72 3t15_A Ribulose bisphosphate c 97.3 0.0012 4.2E-08 72.1 11.9 151 465-644 37-221 (293)
73 4b4t_K 26S protease regulatory 97.2 0.00075 2.6E-08 77.5 10.2 146 466-642 208-379 (428)
74 3cf2_A TER ATPase, transitiona 97.2 0.0012 4E-08 81.6 12.4 149 465-643 239-408 (806)
75 3edt_B KLC 2, kinesin light ch 97.2 0.002 7E-08 67.4 12.5 62 929-990 82-143 (283)
76 2ce7_A Cell division protein F 97.2 0.0024 8.3E-08 74.5 13.9 172 467-668 52-255 (476)
77 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0034 1.2E-07 77.9 15.5 153 430-620 184-362 (758)
78 1iy2_A ATP-dependent metallopr 97.1 0.0055 1.9E-07 66.2 14.8 146 467-642 76-245 (278)
79 3edt_B KLC 2, kinesin light ch 97.1 0.0043 1.5E-07 64.8 13.6 61 930-990 125-185 (283)
80 1ixz_A ATP-dependent metallopr 97.1 0.0058 2E-07 64.9 14.7 146 467-642 52-221 (254)
81 2gno_A DNA polymerase III, gam 97.1 0.002 6.8E-08 70.9 10.9 123 465-620 19-152 (305)
82 3hu3_A Transitional endoplasmi 97.1 0.0051 1.7E-07 72.2 15.0 153 466-648 240-414 (489)
83 3pxi_A Negative regulator of g 97.0 0.0023 8E-08 79.4 12.0 144 430-621 178-339 (758)
84 2kjq_A DNAA-related protein; s 97.0 0.0005 1.7E-08 67.4 4.7 36 465-500 37-72 (149)
85 4fcw_A Chaperone protein CLPB; 97.0 0.0011 3.6E-08 72.7 7.6 38 465-502 48-85 (311)
86 1g5t_A COB(I)alamin adenosyltr 96.9 0.0023 8E-08 65.4 9.4 131 465-595 29-164 (196)
87 2qgz_A Helicase loader, putati 96.9 0.00052 1.8E-08 75.7 4.9 34 466-499 154-188 (308)
88 1in4_A RUVB, holliday junction 96.8 0.069 2.3E-06 59.2 21.3 44 601-644 174-218 (334)
89 4a74_A DNA repair and recombin 96.8 0.0029 9.8E-08 65.8 9.2 98 465-564 26-136 (231)
90 2dhr_A FTSH; AAA+ protein, hex 96.8 0.01 3.4E-07 69.7 14.0 169 467-668 67-270 (499)
91 2r62_A Cell division protease 96.7 0.00051 1.7E-08 73.8 2.6 26 467-492 47-72 (268)
92 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.007 2.4E-07 62.7 10.9 38 465-502 24-61 (235)
93 1n0w_A DNA repair protein RAD5 96.6 0.0048 1.6E-07 64.7 9.4 98 465-565 25-131 (243)
94 3hr8_A Protein RECA; alpha and 96.6 0.0056 1.9E-07 68.6 10.2 89 465-565 62-151 (356)
95 2x8a_A Nuclear valosin-contain 96.6 0.015 5.3E-07 62.7 13.4 125 467-621 47-192 (274)
96 2cvh_A DNA repair and recombin 96.6 0.0031 1.1E-07 65.1 7.5 35 465-502 21-55 (220)
97 3co5_A Putative two-component 96.5 0.001 3.5E-08 64.5 3.0 47 433-488 5-51 (143)
98 3nf1_A KLC 1, kinesin light ch 96.5 0.023 7.9E-07 60.3 13.7 61 930-990 151-211 (311)
99 2b8t_A Thymidine kinase; deoxy 96.5 0.0012 4.2E-08 69.1 3.3 116 465-596 13-128 (223)
100 3io5_A Recombination and repai 96.5 0.0077 2.6E-07 66.0 9.6 88 466-565 30-123 (333)
101 3nf1_A KLC 1, kinesin light ch 96.4 0.022 7.4E-07 60.5 13.0 62 929-990 108-169 (311)
102 3m6a_A ATP-dependent protease 96.4 0.016 5.3E-07 69.0 12.6 28 465-492 109-136 (543)
103 2bjv_A PSP operon transcriptio 96.3 0.0027 9.2E-08 68.0 5.2 61 433-502 7-67 (265)
104 2z43_A DNA repair and recombin 96.3 0.0081 2.8E-07 66.6 9.1 99 465-565 108-215 (324)
105 1ojl_A Transcriptional regulat 96.3 0.023 8E-07 62.3 12.6 61 433-502 3-63 (304)
106 4gcn_A Protein STI-1; structur 96.3 0.022 7.5E-07 53.3 10.7 58 932-990 42-99 (127)
107 2zr9_A Protein RECA, recombina 96.2 0.012 4E-07 66.0 9.8 89 465-565 62-151 (349)
108 1ypw_A Transitional endoplasmi 96.2 0.017 5.9E-07 72.0 12.3 161 431-622 203-387 (806)
109 2c9o_A RUVB-like 1; hexameric 96.2 0.062 2.1E-06 62.3 16.2 86 556-643 298-404 (456)
110 3cf2_A TER ATPase, transitiona 96.1 0.004 1.4E-07 76.8 5.8 144 467-641 514-682 (806)
111 2ehv_A Hypothetical protein PH 96.1 0.0048 1.7E-07 64.9 5.7 38 465-502 31-69 (251)
112 1v5w_A DMC1, meiotic recombina 96.1 0.023 8E-07 63.4 11.6 99 465-565 123-231 (343)
113 1xp8_A RECA protein, recombina 96.1 0.017 5.9E-07 65.0 10.4 89 465-565 75-164 (366)
114 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0044 1.5E-07 68.2 5.2 70 465-565 124-194 (331)
115 1ofh_A ATP-dependent HSL prote 96.0 0.031 1.1E-06 60.6 11.9 25 466-490 52-76 (310)
116 1u94_A RECA protein, recombina 96.0 0.018 6.1E-07 64.7 10.0 89 465-565 64-153 (356)
117 3lda_A DNA repair protein RAD5 95.9 0.017 5.7E-07 65.9 8.9 100 465-565 179-285 (400)
118 4g1t_A Interferon-induced prot 95.9 0.019 6.4E-07 65.7 9.6 58 931-988 93-150 (472)
119 2dr3_A UPF0273 protein PH0284; 95.8 0.017 5.7E-07 60.5 8.1 38 465-502 24-61 (247)
120 3ro3_A PINS homolog, G-protein 95.7 0.13 4.4E-06 48.1 13.5 58 931-990 88-145 (164)
121 3gw4_A Uncharacterized protein 95.7 0.043 1.5E-06 54.4 10.6 59 931-990 65-123 (203)
122 3gyz_A Chaperone protein IPGC; 95.7 0.046 1.6E-06 53.2 10.2 28 934-961 106-133 (151)
123 2i1q_A DNA repair and recombin 95.7 0.016 5.4E-07 64.1 7.6 99 465-565 99-216 (322)
124 4gco_A Protein STI-1; structur 95.7 0.025 8.7E-07 52.9 8.0 48 930-985 79-126 (126)
125 3pxi_A Negative regulator of g 95.6 0.0067 2.3E-07 75.2 4.7 35 466-500 523-557 (758)
126 1vma_A Cell division protein F 95.6 0.04 1.4E-06 60.5 10.4 90 465-564 105-197 (306)
127 3dm5_A SRP54, signal recogniti 95.6 0.045 1.5E-06 62.9 11.2 57 464-520 100-158 (443)
128 4g1t_A Interferon-induced prot 95.6 0.0081 2.8E-07 68.8 4.8 60 931-990 50-110 (472)
129 4gcn_A Protein STI-1; structur 95.5 0.02 6.8E-07 53.6 6.6 54 929-990 5-58 (127)
130 4gyw_A UDP-N-acetylglucosamine 95.5 0.017 5.7E-07 71.2 7.4 109 872-990 49-161 (723)
131 1r6b_X CLPA protein; AAA+, N-t 95.4 0.028 9.5E-07 69.7 9.4 33 465-500 489-521 (758)
132 3bh0_A DNAB-like replicative h 95.4 0.056 1.9E-06 59.5 10.6 38 465-502 69-106 (315)
133 1nlf_A Regulatory protein REPA 95.3 0.049 1.7E-06 58.7 9.8 39 465-503 31-79 (279)
134 3ro3_A PINS homolog, G-protein 95.2 0.1 3.6E-06 48.7 10.8 58 931-990 48-105 (164)
135 1pzn_A RAD51, DNA repair and r 95.2 0.039 1.3E-06 61.7 8.9 99 465-565 132-243 (349)
136 1hz4_A MALT regulatory protein 95.2 0.068 2.3E-06 59.1 10.7 60 931-990 92-151 (373)
137 3e70_C DPA, signal recognition 95.2 0.099 3.4E-06 57.9 11.8 53 465-517 130-184 (328)
138 4gyw_A UDP-N-acetylglucosamine 95.1 0.084 2.9E-06 64.9 12.2 55 928-990 73-127 (723)
139 3kl4_A SRP54, signal recogniti 95.1 0.05 1.7E-06 62.5 9.4 56 464-519 97-154 (433)
140 2hr2_A Hypothetical protein; a 95.1 0.097 3.3E-06 51.6 10.1 59 931-990 56-118 (159)
141 2px0_A Flagellar biosynthesis 95.1 0.058 2E-06 58.9 9.5 55 465-519 106-163 (296)
142 1j8m_F SRP54, signal recogniti 95.1 0.081 2.8E-06 57.8 10.6 92 465-565 99-192 (297)
143 2ifu_A Gamma-SNAP; membrane fu 95.0 0.1 3.4E-06 56.6 11.3 56 931-989 115-170 (307)
144 2vgx_A Chaperone SYCD; alterna 95.0 0.1 3.5E-06 50.1 10.1 38 932-974 89-126 (148)
145 1qhx_A CPT, protein (chloramph 95.0 0.012 4E-07 58.6 3.4 25 466-490 5-29 (178)
146 3rkv_A Putative peptidylprolyl 95.0 0.14 4.7E-06 49.4 11.0 30 932-961 97-126 (162)
147 3ulq_A Response regulator aspa 95.0 0.13 4.5E-06 57.2 12.4 61 928-990 220-280 (383)
148 1qqe_A Vesicular transport pro 94.9 0.21 7.2E-06 53.6 13.5 58 931-990 116-174 (292)
149 3cmu_A Protein RECA, recombina 94.9 0.052 1.8E-06 72.7 10.0 89 464-564 1427-1516(2050)
150 1ls1_A Signal recognition part 94.9 0.089 3E-06 57.4 10.3 55 465-519 99-155 (295)
151 1qvr_A CLPB protein; coiled co 94.8 0.038 1.3E-06 69.4 8.1 67 432-501 558-625 (854)
152 4ga2_A E3 SUMO-protein ligase 94.8 0.13 4.3E-06 49.5 10.1 38 932-974 99-137 (150)
153 3gw4_A Uncharacterized protein 94.8 0.3 1E-05 48.2 13.2 48 932-981 147-194 (203)
154 4gco_A Protein STI-1; structur 94.7 0.064 2.2E-06 50.1 7.5 72 909-990 23-97 (126)
155 2xxa_A Signal recognition part 94.7 0.13 4.4E-06 59.2 11.4 56 464-519 100-158 (433)
156 1na3_A Designed protein CTPR2; 94.7 0.13 4.4E-06 43.6 8.9 47 933-987 44-90 (91)
157 3ulq_A Response regulator aspa 94.7 0.16 5.6E-06 56.4 12.1 114 871-989 196-318 (383)
158 3kb2_A SPBC2 prophage-derived 94.6 0.018 6.2E-07 56.7 3.6 24 466-489 3-26 (173)
159 1sky_E F1-ATPase, F1-ATP synth 94.6 0.076 2.6E-06 61.3 9.0 47 466-512 153-202 (473)
160 3q15_A PSP28, response regulat 94.5 0.2 6.8E-06 55.7 12.3 57 931-990 221-277 (378)
161 3q15_A PSP28, response regulat 94.5 0.28 9.4E-06 54.5 13.3 58 931-990 181-238 (378)
162 3ice_A Transcription terminati 94.4 0.027 9.4E-07 63.2 4.8 25 466-490 176-200 (422)
163 2xcb_A PCRH, regulatory protei 94.4 0.18 6.3E-06 47.5 10.2 37 933-974 87-123 (142)
164 1qqe_A Vesicular transport pro 94.4 0.13 4.5E-06 55.2 10.2 58 931-990 76-134 (292)
165 3bgw_A DNAB-like replicative h 94.4 0.18 6.3E-06 58.2 11.9 39 465-503 198-236 (444)
166 3trf_A Shikimate kinase, SK; a 94.4 0.022 7.7E-07 57.0 3.7 24 466-489 7-30 (185)
167 3k9i_A BH0479 protein; putativ 94.3 0.12 3.9E-06 47.1 8.2 50 932-989 27-76 (117)
168 1nks_A Adenylate kinase; therm 94.3 0.039 1.3E-06 55.2 5.2 34 466-499 3-36 (194)
169 3upv_A Heat shock protein STI1 94.3 0.15 5E-06 46.7 8.8 51 932-984 72-122 (126)
170 2ffh_A Protein (FFH); SRP54, s 94.3 0.17 5.9E-06 57.9 11.1 55 465-519 99-155 (425)
171 3vaa_A Shikimate kinase, SK; s 94.2 0.027 9.1E-07 57.5 3.8 25 465-489 26-50 (199)
172 3uie_A Adenylyl-sulfate kinase 94.2 0.045 1.5E-06 55.8 5.5 35 465-499 26-60 (200)
173 1zu4_A FTSY; GTPase, signal re 94.2 0.12 4E-06 57.1 9.1 40 464-503 105-144 (320)
174 4eqf_A PEX5-related protein; a 94.1 0.083 2.8E-06 58.0 8.0 63 929-991 278-344 (365)
175 3lw7_A Adenylate kinase relate 94.0 0.028 9.4E-07 55.2 3.4 19 466-484 3-21 (179)
176 4a1s_A PINS, partner of inscut 94.0 0.21 7.3E-06 55.5 11.2 58 931-990 302-359 (411)
177 3e1s_A Exodeoxyribonuclease V, 94.0 0.12 4E-06 61.8 9.4 35 464-498 204-238 (574)
178 1q57_A DNA primase/helicase; d 94.0 0.16 5.6E-06 59.5 10.5 38 465-502 243-281 (503)
179 4a1f_A DNAB helicase, replicat 93.9 0.27 9.2E-06 54.5 11.6 38 465-502 47-84 (338)
180 1eiw_A Hypothetical protein MT 93.9 0.026 9E-07 52.1 2.8 70 159-249 3-73 (111)
181 3u3w_A Transcriptional activat 93.9 0.17 5.9E-06 54.1 9.8 58 930-989 194-251 (293)
182 2ck3_D ATP synthase subunit be 93.9 0.21 7.1E-06 57.6 10.8 98 466-565 155-265 (482)
183 3sz7_A HSC70 cochaperone (SGT) 93.9 0.15 5.3E-06 49.2 8.5 38 931-973 78-115 (164)
184 4eun_A Thermoresistant glucoki 93.9 0.038 1.3E-06 56.4 4.2 33 465-502 30-62 (200)
185 3mkr_A Coatomer subunit epsilo 93.8 0.18 6E-06 54.5 9.8 53 930-990 198-250 (291)
186 3vtx_A MAMA; tetratricopeptide 93.8 0.089 3.1E-06 51.6 6.8 52 931-990 4-55 (184)
187 1zuh_A Shikimate kinase; alpha 93.8 0.036 1.2E-06 54.6 3.9 25 465-489 8-32 (168)
188 2ifu_A Gamma-SNAP; membrane fu 93.8 0.19 6.4E-06 54.5 9.9 54 931-986 75-128 (307)
189 2qfc_A PLCR protein; TPR, HTH, 93.8 0.17 5.9E-06 54.1 9.5 57 932-990 196-252 (293)
190 3cmw_A Protein RECA, recombina 93.8 0.14 4.7E-06 67.9 10.1 90 465-566 384-474 (1706)
191 2yvu_A Probable adenylyl-sulfa 93.7 0.062 2.1E-06 53.9 5.5 35 465-499 14-48 (186)
192 1kag_A SKI, shikimate kinase I 93.7 0.032 1.1E-06 55.0 3.2 24 466-489 6-29 (173)
193 1elr_A TPR2A-domain of HOP; HO 93.6 0.34 1.2E-05 43.4 10.0 58 932-990 38-95 (131)
194 1jr3_D DNA polymerase III, del 93.6 0.6 2.1E-05 51.6 13.9 149 465-647 19-183 (343)
195 2zts_A Putative uncharacterize 93.6 0.098 3.4E-06 54.6 7.1 38 465-502 31-69 (251)
196 2q6t_A DNAB replication FORK h 93.6 0.28 9.5E-06 56.6 11.5 38 465-502 201-239 (444)
197 3u3w_A Transcriptional activat 93.6 0.12 4E-06 55.5 7.7 59 931-990 154-212 (293)
198 1kht_A Adenylate kinase; phosp 93.6 0.041 1.4E-06 55.0 3.8 26 466-491 5-30 (192)
199 1ly1_A Polynucleotide kinase; 93.6 0.041 1.4E-06 54.5 3.7 21 466-486 4-24 (181)
200 2iyv_A Shikimate kinase, SK; t 93.5 0.035 1.2E-06 55.5 3.2 24 466-489 4-27 (184)
201 3cmu_A Protein RECA, recombina 93.5 0.15 5.3E-06 68.3 10.1 89 465-565 384-473 (2050)
202 1hxi_A PEX5, peroxisome target 93.5 0.28 9.6E-06 45.2 9.3 51 932-990 51-101 (121)
203 3t61_A Gluconokinase; PSI-biol 93.5 0.038 1.3E-06 56.3 3.4 23 466-488 20-42 (202)
204 3iij_A Coilin-interacting nucl 93.4 0.033 1.1E-06 55.5 2.7 24 465-488 12-35 (180)
205 2rhm_A Putative kinase; P-loop 93.4 0.046 1.6E-06 54.9 3.8 25 465-489 6-30 (193)
206 1via_A Shikimate kinase; struc 93.3 0.037 1.3E-06 55.0 2.9 24 466-489 6-29 (175)
207 3cmw_A Protein RECA, recombina 93.3 0.18 6.3E-06 66.7 10.0 89 465-565 1432-1521(1706)
208 2plr_A DTMP kinase, probable t 93.2 0.08 2.7E-06 53.9 5.3 33 465-498 5-37 (213)
209 2ze6_A Isopentenyl transferase 93.2 0.05 1.7E-06 57.9 3.9 24 466-489 3-26 (253)
210 2jaq_A Deoxyguanosine kinase; 93.2 0.052 1.8E-06 54.9 3.8 24 466-489 2-25 (205)
211 1zp6_A Hypothetical protein AT 93.2 0.045 1.5E-06 54.9 3.3 33 465-500 10-42 (191)
212 3gyz_A Chaperone protein IPGC; 93.1 0.17 5.8E-06 49.1 7.3 72 909-990 46-120 (151)
213 2r6a_A DNAB helicase, replicat 93.1 0.27 9.3E-06 56.9 10.3 38 465-502 204-242 (454)
214 2vli_A Antibiotic resistance p 93.1 0.039 1.3E-06 54.9 2.7 24 466-489 7-30 (183)
215 3jvv_A Twitching mobility prot 93.1 0.028 9.7E-07 63.0 1.8 108 465-595 124-232 (356)
216 2l6j_A TPR repeat-containing p 93.1 0.41 1.4E-05 42.0 9.3 54 932-990 38-94 (111)
217 1p5q_A FKBP52, FK506-binding p 93.0 0.47 1.6E-05 52.3 11.7 53 930-990 228-280 (336)
218 3urz_A Uncharacterized protein 93.0 0.41 1.4E-05 48.4 10.4 49 932-988 88-136 (208)
219 3ro2_A PINS homolog, G-protein 93.0 0.92 3.2E-05 47.8 13.7 58 931-990 262-319 (338)
220 3sf4_A G-protein-signaling mod 93.0 0.76 2.6E-05 50.4 13.5 59 930-990 265-323 (406)
221 3fwy_A Light-independent proto 93.0 0.08 2.7E-06 58.3 5.3 40 463-502 47-86 (314)
222 1knq_A Gluconate kinase; ALFA/ 93.0 0.061 2.1E-06 53.2 3.9 32 465-501 9-40 (175)
223 1ex7_A Guanylate kinase; subst 93.0 0.047 1.6E-06 55.4 3.1 27 466-492 3-29 (186)
224 1tev_A UMP-CMP kinase; ploop, 93.0 0.059 2E-06 54.0 3.9 24 465-488 4-27 (196)
225 2lni_A Stress-induced-phosphop 93.0 0.19 6.5E-06 45.5 7.1 51 931-989 83-133 (133)
226 2pt5_A Shikimate kinase, SK; a 92.9 0.061 2.1E-06 52.8 3.8 24 466-489 2-25 (168)
227 1e6c_A Shikimate kinase; phosp 92.9 0.053 1.8E-06 53.4 3.4 24 466-489 4-27 (173)
228 2pjz_A Hypothetical protein ST 92.9 0.32 1.1E-05 52.0 9.7 24 465-488 31-54 (263)
229 2v5f_A Prolyl 4-hydroxylase su 92.9 0.65 2.2E-05 41.6 10.5 48 931-986 45-92 (104)
230 3upu_A ATP-dependent DNA helic 92.9 0.3 1E-05 56.6 10.2 35 465-499 46-81 (459)
231 2c95_A Adenylate kinase 1; tra 92.9 0.062 2.1E-06 54.0 3.9 24 465-488 10-33 (196)
232 2bwj_A Adenylate kinase 5; pho 92.9 0.058 2E-06 54.4 3.7 25 465-489 13-37 (199)
233 1fx0_B ATP synthase beta chain 92.9 0.24 8.2E-06 57.4 9.1 99 466-565 167-278 (498)
234 3vtx_A MAMA; tetratricopeptide 92.9 0.14 4.7E-06 50.2 6.3 51 932-990 107-157 (184)
235 4a1s_A PINS, partner of inscut 92.9 0.69 2.4E-05 51.3 13.0 58 931-990 262-319 (411)
236 3ma5_A Tetratricopeptide repea 92.9 0.22 7.5E-06 44.1 7.1 31 932-962 41-71 (100)
237 3cm0_A Adenylate kinase; ATP-b 92.8 0.063 2.1E-06 53.6 3.8 24 466-489 6-29 (186)
238 2pbr_A DTMP kinase, thymidylat 92.8 0.15 5.1E-06 51.0 6.6 25 466-490 2-26 (195)
239 1nn5_A Similar to deoxythymidy 92.8 0.079 2.7E-06 54.1 4.7 30 465-494 10-40 (215)
240 2j37_W Signal recognition part 92.8 0.34 1.2E-05 56.7 10.4 39 464-502 101-139 (504)
241 3sf4_A G-protein-signaling mod 92.8 0.83 2.8E-05 50.1 13.3 61 929-991 304-364 (406)
242 1tf7_A KAIC; homohexamer, hexa 92.8 0.11 3.6E-06 61.6 6.2 129 465-595 40-186 (525)
243 2cdn_A Adenylate kinase; phosp 92.7 0.067 2.3E-06 54.3 3.9 24 466-489 22-45 (201)
244 1kgd_A CASK, peripheral plasma 92.7 0.063 2.2E-06 53.8 3.6 25 465-489 6-30 (180)
245 2qor_A Guanylate kinase; phosp 92.6 0.057 1.9E-06 55.2 3.2 25 465-489 13-37 (204)
246 1cke_A CK, MSSA, protein (cyti 92.6 0.069 2.3E-06 55.2 3.9 24 466-489 7-30 (227)
247 2vyi_A SGTA protein; chaperone 92.6 0.6 2.1E-05 41.6 10.0 51 932-990 80-130 (131)
248 1y63_A LMAJ004144AAA protein; 92.6 0.068 2.3E-06 53.7 3.7 22 466-487 12-33 (184)
249 2l6j_A TPR repeat-containing p 92.5 0.16 5.6E-06 44.7 5.8 51 932-990 4-54 (111)
250 3q49_B STIP1 homology and U bo 92.5 0.59 2E-05 42.8 10.0 33 932-964 77-109 (137)
251 1qf9_A UMP/CMP kinase, protein 92.5 0.072 2.5E-06 53.2 3.8 25 465-489 7-31 (194)
252 3ro2_A PINS homolog, G-protein 92.5 0.99 3.4E-05 47.5 13.1 58 931-990 222-279 (338)
253 2yhs_A FTSY, cell division pro 92.4 0.43 1.5E-05 55.4 10.5 37 464-500 293-329 (503)
254 2pl2_A Hypothetical conserved 92.4 0.42 1.4E-05 48.7 9.6 51 932-990 151-201 (217)
255 3tau_A Guanylate kinase, GMP k 92.4 0.07 2.4E-06 54.8 3.5 28 465-492 9-36 (208)
256 3c8u_A Fructokinase; YP_612366 92.3 0.077 2.6E-06 54.4 3.8 37 465-501 23-59 (208)
257 2wwf_A Thymidilate kinase, put 92.3 0.077 2.6E-06 54.1 3.8 30 465-494 11-41 (212)
258 2z0h_A DTMP kinase, thymidylat 92.3 0.22 7.7E-06 49.9 7.2 25 466-490 2-26 (197)
259 3k9i_A BH0479 protein; putativ 92.3 0.67 2.3E-05 41.8 9.9 38 932-974 61-98 (117)
260 3a00_A Guanylate kinase, GMP k 92.3 0.061 2.1E-06 54.2 2.8 27 466-492 3-29 (186)
261 3vr4_D V-type sodium ATPase su 92.2 0.21 7.2E-06 57.3 7.4 99 463-564 151-259 (465)
262 2bdt_A BH3686; alpha-beta prot 92.2 0.082 2.8E-06 53.1 3.7 30 466-499 4-33 (189)
263 1rz3_A Hypothetical protein rb 92.2 0.12 4E-06 52.8 4.9 35 465-499 23-57 (201)
264 3oaa_A ATP synthase subunit al 92.2 0.33 1.1E-05 56.2 9.0 96 466-565 164-266 (513)
265 2qfc_A PLCR protein; TPR, HTH, 92.1 0.51 1.7E-05 50.4 10.2 58 931-990 154-212 (293)
266 1ukz_A Uridylate kinase; trans 92.1 0.087 3E-06 53.5 3.8 24 465-488 16-39 (203)
267 3gd7_A Fusion complex of cysti 92.1 0.24 8.3E-06 56.1 7.8 34 465-500 48-81 (390)
268 3fb4_A Adenylate kinase; psych 92.1 0.086 3E-06 54.1 3.8 23 466-488 2-24 (216)
269 1elw_A TPR1-domain of HOP; HOP 92.1 0.81 2.8E-05 40.0 10.0 45 932-984 72-116 (118)
270 2pl2_A Hypothetical conserved 92.0 0.33 1.1E-05 49.5 8.3 48 932-987 39-86 (217)
271 3tr0_A Guanylate kinase, GMP k 92.0 0.082 2.8E-06 53.6 3.5 24 465-488 8-31 (205)
272 4ga2_A E3 SUMO-protein ligase 92.0 0.24 8.1E-06 47.5 6.7 76 906-990 38-115 (150)
273 2if2_A Dephospho-COA kinase; a 92.0 0.08 2.7E-06 53.8 3.4 21 466-486 3-23 (204)
274 2r8r_A Sensor protein; KDPD, P 92.0 0.17 5.7E-06 52.8 5.7 37 466-502 8-44 (228)
275 2grj_A Dephospho-COA kinase; T 91.9 0.098 3.4E-06 53.2 3.9 33 464-501 12-44 (192)
276 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.095 3.3E-06 55.9 4.0 25 465-489 5-29 (260)
277 3l0o_A Transcription terminati 91.8 0.059 2E-06 60.5 2.3 39 463-502 175-215 (427)
278 2bbw_A Adenylate kinase 4, AK4 91.8 0.096 3.3E-06 55.2 3.9 25 465-489 28-52 (246)
279 1tf7_A KAIC; homohexamer, hexa 91.8 0.48 1.6E-05 55.9 10.3 37 465-501 282-318 (525)
280 2qe7_A ATP synthase subunit al 91.8 0.37 1.3E-05 55.8 8.9 96 466-565 164-266 (502)
281 3d3q_A TRNA delta(2)-isopenten 91.7 0.15 5E-06 56.7 5.3 33 465-502 8-40 (340)
282 1aky_A Adenylate kinase; ATP:A 91.7 0.1 3.5E-06 53.9 3.9 24 466-489 6-29 (220)
283 2kat_A Uncharacterized protein 91.7 0.25 8.6E-06 44.4 6.2 49 933-989 20-68 (115)
284 2kc7_A BFR218_protein; tetratr 91.7 0.91 3.1E-05 39.2 9.7 51 934-990 37-87 (99)
285 2j41_A Guanylate kinase; GMP, 91.7 0.093 3.2E-06 53.2 3.5 24 465-488 7-30 (207)
286 1gvn_B Zeta; postsegregational 91.7 0.11 3.9E-06 56.3 4.3 33 465-500 34-66 (287)
287 3dl0_A Adenylate kinase; phosp 91.6 0.093 3.2E-06 53.9 3.4 23 466-488 2-24 (216)
288 1jjv_A Dephospho-COA kinase; P 91.6 0.091 3.1E-06 53.5 3.3 21 466-486 4-24 (206)
289 1na0_A Designed protein CTPR3; 91.6 1.1 3.9E-05 39.3 10.5 48 932-987 77-124 (125)
290 4gp7_A Metallophosphoesterase; 91.5 0.079 2.7E-06 52.6 2.7 19 465-483 10-28 (171)
291 1zd8_A GTP:AMP phosphotransfer 91.5 0.092 3.2E-06 54.5 3.3 23 466-488 9-31 (227)
292 2r44_A Uncharacterized protein 91.5 0.055 1.9E-06 59.7 1.6 49 431-492 26-74 (331)
293 1cp2_A CP2, nitrogenase iron p 91.5 0.15 5.2E-06 54.2 5.1 38 466-503 3-40 (269)
294 1hz4_A MALT regulatory protein 91.5 1.3 4.6E-05 48.4 13.1 55 932-989 135-189 (373)
295 3asz_A Uridine kinase; cytidin 91.5 0.11 3.7E-06 53.1 3.8 33 465-500 7-39 (211)
296 2ewv_A Twitching motility prot 91.5 0.22 7.4E-06 56.1 6.6 36 464-499 136-172 (372)
297 1cr0_A DNA primase/helicase; R 91.5 0.15 5.2E-06 55.2 5.1 38 465-502 36-74 (296)
298 2pez_A Bifunctional 3'-phospho 91.5 0.17 5.8E-06 50.3 5.1 26 465-490 6-31 (179)
299 2xev_A YBGF; tetratricopeptide 91.5 0.39 1.4E-05 43.5 7.3 47 932-983 76-122 (129)
300 1xjc_A MOBB protein homolog; s 91.4 0.19 6.4E-06 50.1 5.3 27 465-491 5-31 (169)
301 1p5q_A FKBP52, FK506-binding p 91.4 0.42 1.4E-05 52.6 8.8 32 930-961 262-294 (336)
302 1ye8_A Protein THEP1, hypothet 91.4 0.12 4E-06 51.9 3.9 24 466-489 2-25 (178)
303 3ney_A 55 kDa erythrocyte memb 91.4 0.11 3.8E-06 53.1 3.7 25 465-489 20-44 (197)
304 2r9v_A ATP synthase subunit al 91.4 0.34 1.2E-05 56.2 8.1 96 466-565 177-279 (515)
305 1uj2_A Uridine-cytidine kinase 91.3 0.11 3.6E-06 55.1 3.6 26 465-490 23-48 (252)
306 3end_A Light-independent proto 91.3 0.17 5.7E-06 55.2 5.3 40 464-503 41-80 (307)
307 3ake_A Cytidylate kinase; CMP 91.3 0.12 4E-06 52.5 3.8 24 466-489 4-27 (208)
308 3b9q_A Chloroplast SRP recepto 91.3 0.32 1.1E-05 53.1 7.4 35 465-499 101-135 (302)
309 1na3_A Designed protein CTPR2; 91.3 0.32 1.1E-05 41.1 6.0 52 931-990 8-59 (91)
310 4e22_A Cytidylate kinase; P-lo 91.2 0.11 3.8E-06 55.1 3.6 24 466-489 29-52 (252)
311 1rj9_A FTSY, signal recognitio 91.2 0.18 6.3E-06 55.1 5.4 35 465-499 103-137 (304)
312 1fch_A Peroxisomal targeting s 91.2 0.34 1.2E-05 52.7 7.7 62 930-991 283-347 (368)
313 1ihg_A Cyclophilin 40; ppiase 91.2 0.62 2.1E-05 52.2 10.0 54 928-989 303-356 (370)
314 2afh_E Nitrogenase iron protei 91.2 0.17 5.8E-06 54.6 5.1 39 465-503 3-41 (289)
315 3qou_A Protein YBBN; thioredox 91.2 0.52 1.8E-05 50.5 8.9 56 929-990 216-271 (287)
316 1uf9_A TT1252 protein; P-loop, 91.0 0.11 3.9E-06 52.4 3.3 23 465-487 9-31 (203)
317 1zak_A Adenylate kinase; ATP:A 91.0 0.11 3.7E-06 53.7 3.2 24 466-489 7-30 (222)
318 2c61_A A-type ATP synthase non 91.0 0.29 9.8E-06 56.4 6.9 97 466-564 154-260 (469)
319 2qt1_A Nicotinamide riboside k 91.0 0.11 3.8E-06 53.0 3.1 33 465-501 22-54 (207)
320 2v54_A DTMP kinase, thymidylat 90.9 0.11 3.6E-06 52.7 3.0 23 466-488 6-28 (204)
321 1m7g_A Adenylylsulfate kinase; 90.9 0.14 4.8E-06 52.5 4.0 25 465-489 26-50 (211)
322 1kt0_A FKBP51, 51 kDa FK506-bi 90.9 0.89 3E-05 52.4 11.2 52 930-989 349-400 (457)
323 3tlx_A Adenylate kinase 2; str 90.9 0.13 4.6E-06 54.1 3.9 24 465-488 30-53 (243)
324 3nwj_A ATSK2; P loop, shikimat 90.9 0.1 3.4E-06 55.5 2.8 25 465-489 49-73 (250)
325 1yrb_A ATP(GTP)binding protein 90.8 0.24 8.2E-06 52.2 5.8 37 465-502 15-51 (262)
326 1odf_A YGR205W, hypothetical 3 90.8 0.16 5.3E-06 55.3 4.3 38 465-502 32-72 (290)
327 3umf_A Adenylate kinase; rossm 90.7 0.17 5.6E-06 52.6 4.2 26 463-488 28-53 (217)
328 4dzz_A Plasmid partitioning pr 90.7 0.27 9.3E-06 49.6 5.8 38 466-503 3-41 (206)
329 2orw_A Thymidine kinase; TMTK, 90.7 0.22 7.6E-06 50.1 5.1 33 466-498 5-37 (184)
330 3upv_A Heat shock protein STI1 90.6 0.55 1.9E-05 42.7 7.4 72 909-990 14-88 (126)
331 1fx0_A ATP synthase alpha chai 90.6 0.37 1.2E-05 56.0 7.3 91 466-565 165-267 (507)
332 2xb4_A Adenylate kinase; ATP-b 90.6 0.15 5.2E-06 52.8 3.8 23 466-488 2-24 (223)
333 1lvg_A Guanylate kinase, GMP k 90.6 0.14 4.7E-06 52.2 3.4 24 466-489 6-29 (198)
334 3be4_A Adenylate kinase; malar 90.5 0.15 5E-06 52.6 3.7 23 466-488 7-29 (217)
335 2fz4_A DNA repair protein RAD2 90.5 0.88 3E-05 47.6 9.8 22 467-488 111-132 (237)
336 1a17_A Serine/threonine protei 90.5 0.83 2.8E-05 43.1 8.9 39 931-974 80-118 (166)
337 2jeo_A Uridine-cytidine kinase 90.5 0.15 5.2E-06 53.7 3.8 24 465-488 26-49 (245)
338 1w36_D RECD, exodeoxyribonucle 90.5 0.79 2.7E-05 55.1 10.5 26 464-489 164-189 (608)
339 1e4v_A Adenylate kinase; trans 90.5 0.15 5.1E-06 52.4 3.6 23 466-488 2-24 (214)
340 1zu2_A Mitochondrial import re 90.4 0.89 3E-05 44.6 9.0 55 931-990 79-144 (158)
341 2h6f_A Protein farnesyltransfe 90.4 0.52 1.8E-05 53.1 8.4 104 873-986 138-246 (382)
342 2dba_A Smooth muscle cell asso 90.4 0.84 2.9E-05 42.0 8.6 38 932-974 99-136 (148)
343 2og2_A Putative signal recogni 90.4 0.42 1.4E-05 53.5 7.4 35 465-499 158-192 (359)
344 3iqw_A Tail-anchored protein t 90.2 0.35 1.2E-05 53.6 6.6 39 465-503 17-55 (334)
345 1znw_A Guanylate kinase, GMP k 90.2 0.15 5E-06 52.2 3.3 25 465-489 21-45 (207)
346 1sq5_A Pantothenate kinase; P- 90.2 0.23 7.8E-06 54.4 5.0 39 465-503 81-121 (308)
347 1ak2_A Adenylate kinase isoenz 90.2 0.15 5.1E-06 53.3 3.3 24 466-489 18-41 (233)
348 2kck_A TPR repeat; tetratricop 90.1 0.53 1.8E-05 40.9 6.6 50 933-990 41-93 (112)
349 2p5t_B PEZT; postsegregational 90.1 0.13 4.4E-06 54.6 2.9 34 465-501 33-66 (253)
350 1gtv_A TMK, thymidylate kinase 90.1 0.086 2.9E-06 53.8 1.4 25 466-490 2-26 (214)
351 3r20_A Cytidylate kinase; stru 90.1 0.15 5.3E-06 53.5 3.3 24 466-489 11-34 (233)
352 4b4t_Q 26S proteasome regulato 90.1 1.1 3.9E-05 50.0 10.9 59 930-990 133-191 (434)
353 3rkv_A Putative peptidylprolyl 90.0 1.2 4E-05 42.6 9.6 50 931-988 62-111 (162)
354 1na0_A Designed protein CTPR3; 90.0 1.1 3.9E-05 39.4 8.9 46 933-986 44-89 (125)
355 2ck3_A ATP synthase subunit al 90.0 0.63 2.2E-05 54.0 8.6 98 466-565 164-274 (510)
356 3io3_A DEHA2D07832P; chaperone 90.0 0.36 1.2E-05 53.8 6.5 40 464-503 18-59 (348)
357 2vgx_A Chaperone SYCD; alterna 90.0 0.62 2.1E-05 44.5 7.5 72 909-990 31-105 (148)
358 3crm_A TRNA delta(2)-isopenten 89.9 0.17 5.7E-06 55.8 3.6 32 465-501 6-37 (323)
359 3kjh_A CO dehydrogenase/acetyl 89.9 0.22 7.5E-06 51.9 4.4 37 467-503 3-39 (254)
360 2v3c_C SRP54, signal recogniti 89.9 0.15 5.1E-06 58.7 3.3 38 465-502 100-137 (432)
361 4i17_A Hypothetical protein; T 89.9 0.85 2.9E-05 46.1 8.9 52 931-990 116-169 (228)
362 1xnf_A Lipoprotein NLPI; TPR, 89.8 1.3 4.6E-05 45.5 10.5 38 932-974 111-148 (275)
363 3hws_A ATP-dependent CLP prote 89.8 0.16 5.4E-06 56.8 3.4 24 466-489 53-76 (363)
364 1tue_A Replication protein E1; 89.7 0.14 4.7E-06 52.7 2.5 25 466-490 60-84 (212)
365 3aez_A Pantothenate kinase; tr 89.7 0.19 6.5E-06 55.2 3.9 37 465-501 91-129 (312)
366 1vht_A Dephospho-COA kinase; s 89.7 0.18 6.2E-06 51.8 3.5 22 465-486 5-26 (218)
367 2fbn_A 70 kDa peptidylprolyl i 89.7 0.78 2.7E-05 45.6 8.2 50 932-989 122-171 (198)
368 2xev_A YBGF; tetratricopeptide 89.6 1.8 6.1E-05 39.0 10.1 46 932-982 39-84 (129)
369 2c2l_A CHIP, carboxy terminus 89.6 0.54 1.8E-05 50.2 7.4 30 932-961 72-101 (281)
370 1um8_A ATP-dependent CLP prote 89.6 0.17 5.7E-06 56.9 3.4 25 466-490 74-98 (376)
371 2fbn_A 70 kDa peptidylprolyl i 89.5 0.94 3.2E-05 45.0 8.7 52 931-990 87-138 (198)
372 3gqb_B V-type ATP synthase bet 89.5 0.37 1.3E-05 55.3 6.1 92 466-564 149-262 (464)
373 3zq6_A Putative arsenical pump 89.5 0.54 1.8E-05 51.8 7.4 39 465-503 15-53 (324)
374 1z6g_A Guanylate kinase; struc 89.4 0.16 5.5E-06 52.5 2.9 24 465-488 24-47 (218)
375 3sr0_A Adenylate kinase; phosp 89.4 0.22 7.4E-06 51.3 3.8 23 466-488 2-24 (206)
376 3uq3_A Heat shock protein STI1 89.3 1.4 4.8E-05 44.7 10.1 57 933-990 39-95 (258)
377 2i3b_A HCR-ntpase, human cance 89.3 0.2 7E-06 50.7 3.5 24 466-489 3-26 (189)
378 3a8t_A Adenylate isopentenyltr 89.2 0.15 5.1E-06 56.4 2.6 34 465-503 41-74 (339)
379 3nbx_X ATPase RAVA; AAA+ ATPas 89.2 0.13 4.3E-06 60.4 2.1 45 432-489 22-66 (500)
380 3urz_A Uncharacterized protein 89.2 1.7 5.9E-05 43.7 10.5 50 933-990 55-104 (208)
381 3ma5_A Tetratricopeptide repea 89.1 0.58 2E-05 41.2 6.1 31 933-963 8-38 (100)
382 3hym_B Cell division cycle pro 89.1 0.57 1.9E-05 49.7 7.1 60 931-990 192-252 (330)
383 2qmh_A HPR kinase/phosphorylas 89.1 0.18 6.3E-06 51.4 2.9 25 464-488 34-58 (205)
384 1a7j_A Phosphoribulokinase; tr 89.1 0.16 5.4E-06 55.2 2.7 37 465-502 6-43 (290)
385 1kt0_A FKBP51, 51 kDa FK506-bi 89.1 0.73 2.5E-05 53.1 8.5 31 929-959 382-413 (457)
386 3exa_A TRNA delta(2)-isopenten 89.1 0.19 6.6E-06 54.9 3.3 33 465-502 4-36 (322)
387 2j9r_A Thymidine kinase; TK1, 89.0 1.3 4.5E-05 45.6 9.4 112 465-596 29-140 (214)
388 1ihg_A Cyclophilin 40; ppiase 89.0 1.4 4.7E-05 49.3 10.4 50 931-988 272-321 (370)
389 1w3b_A UDP-N-acetylglucosamine 88.9 0.69 2.4E-05 51.0 7.9 50 932-989 271-320 (388)
390 1ltq_A Polynucleotide kinase; 88.9 0.24 8.1E-06 53.6 3.9 30 466-499 4-33 (301)
391 2eyu_A Twitching motility prot 88.9 0.31 1.1E-05 52.0 4.7 36 464-499 25-60 (261)
392 2f6r_A COA synthase, bifunctio 88.9 0.2 6.7E-06 54.1 3.2 21 465-485 76-96 (281)
393 1htw_A HI0065; nucleotide-bind 88.8 0.27 9.2E-06 48.3 3.9 24 465-488 34-57 (158)
394 3p32_A Probable GTPase RV1496/ 88.8 0.37 1.3E-05 53.8 5.5 38 464-501 79-116 (355)
395 4eaq_A DTMP kinase, thymidylat 88.8 0.56 1.9E-05 48.9 6.5 29 465-493 27-55 (229)
396 3foz_A TRNA delta(2)-isopenten 88.7 0.23 8E-06 54.2 3.6 33 465-502 11-43 (316)
397 2vq2_A PILW, putative fimbrial 88.7 0.76 2.6E-05 45.6 7.3 108 873-990 49-163 (225)
398 3tqc_A Pantothenate kinase; bi 88.7 0.25 8.6E-06 54.4 3.9 38 465-502 93-132 (321)
399 1s96_A Guanylate kinase, GMP k 88.7 0.22 7.7E-06 51.7 3.4 25 465-489 17-41 (219)
400 3k1j_A LON protease, ATP-depen 88.7 0.31 1.1E-05 58.6 5.1 56 430-498 39-94 (604)
401 1wao_1 Serine/threonine protei 88.6 0.26 9E-06 57.3 4.3 47 929-983 71-117 (477)
402 2wsm_A Hydrogenase expression/ 88.6 0.44 1.5E-05 48.7 5.6 36 464-500 30-65 (221)
403 1elw_A TPR1-domain of HOP; HOP 88.6 2.3 8E-05 36.9 9.8 44 933-984 39-82 (118)
404 2hr2_A Hypothetical protein; a 88.6 1.4 4.9E-05 43.2 8.8 35 931-965 97-135 (159)
405 1np6_A Molybdopterin-guanine d 88.6 0.41 1.4E-05 47.8 5.0 27 465-491 7-33 (174)
406 1hh8_A P67PHOX, NCF-2, neutrop 88.5 1 3.5E-05 44.7 8.2 59 932-990 71-137 (213)
407 4i17_A Hypothetical protein; T 88.5 1.9 6.6E-05 43.4 10.4 56 929-989 73-132 (228)
408 2xcb_A PCRH, regulatory protei 88.5 0.95 3.3E-05 42.4 7.5 72 909-990 28-102 (142)
409 3lnc_A Guanylate kinase, GMP k 88.5 0.16 5.5E-06 52.8 2.1 24 465-488 28-52 (231)
410 4abn_A Tetratricopeptide repea 88.5 1.2 4.1E-05 51.5 9.8 52 931-990 257-308 (474)
411 3ug7_A Arsenical pump-driving 88.4 0.53 1.8E-05 52.4 6.4 39 465-503 27-65 (349)
412 2hf9_A Probable hydrogenase ni 88.3 0.42 1.4E-05 49.0 5.2 27 465-491 39-65 (226)
413 2h6f_A Protein farnesyltransfe 88.3 0.52 1.8E-05 53.1 6.3 112 869-989 169-289 (382)
414 3sz7_A HSC70 cochaperone (SGT) 88.2 1 3.5E-05 43.2 7.6 72 909-990 21-95 (164)
415 1q3t_A Cytidylate kinase; nucl 88.1 0.29 9.9E-06 51.1 3.8 24 465-488 17-40 (236)
416 4abn_A Tetratricopeptide repea 88.0 0.49 1.7E-05 54.8 6.1 56 930-990 211-274 (474)
417 2woo_A ATPase GET3; tail-ancho 88.0 0.6 2E-05 51.5 6.5 39 465-503 20-58 (329)
418 3b5x_A Lipid A export ATP-bind 88.0 1 3.5E-05 53.8 8.9 23 465-487 370-392 (582)
419 2ga8_A Hypothetical 39.9 kDa p 87.9 0.23 7.7E-06 55.4 2.9 27 466-492 26-52 (359)
420 3eph_A TRNA isopentenyltransfe 87.8 0.31 1.1E-05 55.1 4.0 33 465-502 3-35 (409)
421 2ho1_A Type 4 fimbrial biogene 87.8 1.3 4.3E-05 45.2 8.5 53 930-990 139-191 (252)
422 4eqf_A PEX5-related protein; a 87.7 1.1 3.6E-05 48.9 8.3 30 932-961 133-162 (365)
423 1w3b_A UDP-N-acetylglucosamine 87.7 0.74 2.5E-05 50.8 7.1 51 930-988 337-387 (388)
424 3fdi_A Uncharacterized protein 87.7 0.3 1E-05 50.0 3.5 26 465-490 7-32 (201)
425 3uq3_A Heat shock protein STI1 87.6 2.4 8.3E-05 42.8 10.5 49 932-982 207-255 (258)
426 3b85_A Phosphate starvation-in 87.5 0.28 9.7E-06 50.4 3.2 22 466-487 24-45 (208)
427 3hjn_A DTMP kinase, thymidylat 87.3 2.4 8.1E-05 43.0 10.0 34 466-499 2-35 (197)
428 3ea0_A ATPase, para family; al 87.3 0.59 2E-05 48.6 5.6 38 465-502 5-44 (245)
429 1ihu_A Arsenical pump-driving 87.2 0.56 1.9E-05 56.1 6.0 39 465-503 9-47 (589)
430 1g3q_A MIND ATPase, cell divis 87.2 0.58 2E-05 48.4 5.4 37 466-502 4-41 (237)
431 1g8p_A Magnesium-chelatase 38 87.1 0.22 7.4E-06 55.0 2.2 23 467-489 48-70 (350)
432 2vsy_A XCC0866; transferase, g 87.1 0.64 2.2E-05 54.9 6.4 49 931-987 90-138 (568)
433 1elr_A TPR2A-domain of HOP; HO 87.0 0.9 3.1E-05 40.6 6.1 52 931-990 3-54 (131)
434 1zu2_A Mitochondrial import re 87.0 1.3 4.4E-05 43.4 7.4 50 931-988 35-94 (158)
435 1g41_A Heat shock protein HSLU 86.9 0.31 1.1E-05 56.0 3.4 26 467-492 53-78 (444)
436 3fkq_A NTRC-like two-domain pr 86.9 0.48 1.6E-05 53.2 4.9 38 464-501 143-181 (373)
437 2onk_A Molybdate/tungstate ABC 86.9 0.33 1.1E-05 51.1 3.4 33 465-498 25-57 (240)
438 3mfy_A V-type ATP synthase alp 86.9 1 3.5E-05 52.7 7.6 45 466-512 229-275 (588)
439 2h92_A Cytidylate kinase; ross 86.8 0.33 1.1E-05 49.8 3.2 23 466-488 5-27 (219)
440 2axn_A 6-phosphofructo-2-kinas 86.8 0.54 1.8E-05 55.4 5.5 28 465-492 36-63 (520)
441 4f4c_A Multidrug resistance pr 86.7 1.4 5E-05 57.7 9.9 34 465-499 445-478 (1321)
442 3q9l_A Septum site-determining 86.7 0.62 2.1E-05 48.9 5.4 37 466-502 4-41 (260)
443 3zvl_A Bifunctional polynucleo 86.7 0.27 9.2E-06 56.3 2.7 24 465-488 259-282 (416)
444 1oix_A RAS-related protein RAB 86.6 0.36 1.2E-05 48.4 3.4 22 466-487 31-52 (191)
445 2dba_A Smooth muscle cell asso 86.6 3.3 0.00011 37.9 9.9 41 932-977 65-105 (148)
446 3tif_A Uncharacterized ABC tra 86.6 0.3 1E-05 51.2 2.8 34 465-499 32-65 (235)
447 2f1r_A Molybdopterin-guanine d 86.5 0.23 7.8E-06 49.5 1.8 36 466-501 4-41 (171)
448 2pcj_A ABC transporter, lipopr 86.5 0.29 1E-05 50.9 2.7 34 465-499 31-64 (224)
449 3vr4_A V-type sodium ATPase ca 86.5 1.1 3.7E-05 52.7 7.6 44 466-511 234-279 (600)
450 3q49_B STIP1 homology and U bo 86.5 0.94 3.2E-05 41.4 6.0 49 934-990 45-93 (137)
451 4edh_A DTMP kinase, thymidylat 86.5 1.2 4E-05 46.0 7.2 31 465-495 7-38 (213)
452 2woj_A ATPase GET3; tail-ancho 86.4 0.89 3.1E-05 50.7 6.7 39 465-503 19-59 (354)
453 2vq2_A PILW, putative fimbrial 86.3 7.7 0.00026 38.0 13.3 52 931-990 146-198 (225)
454 2fo7_A Synthetic consensus TPR 86.3 3.4 0.00012 36.4 9.6 49 933-989 70-118 (136)
455 1fch_A Peroxisomal targeting s 86.2 4.2 0.00014 43.8 12.1 53 930-990 249-301 (368)
456 2v5f_A Prolyl 4-hydroxylase su 86.2 1.4 4.8E-05 39.3 6.8 55 933-990 6-62 (104)
457 2qi9_C Vitamin B12 import ATP- 86.1 0.29 1E-05 51.8 2.4 33 465-499 27-59 (249)
458 3llm_A ATP-dependent RNA helic 86.1 1.7 5.9E-05 45.0 8.4 53 465-517 77-134 (235)
459 1wao_1 Serine/threonine protei 86.1 0.69 2.4E-05 53.7 5.9 51 932-990 40-90 (477)
460 2pzi_A Probable serine/threoni 86.0 1.9 6.5E-05 52.4 10.0 51 931-990 500-550 (681)
461 4f4c_A Multidrug resistance pr 86.0 1.3 4.6E-05 58.0 9.1 35 465-500 1106-1140(1321)
462 2fo7_A Synthetic consensus TPR 86.0 3.2 0.00011 36.7 9.3 49 933-989 36-84 (136)
463 2ocp_A DGK, deoxyguanosine kin 85.9 0.44 1.5E-05 49.8 3.7 25 465-489 3-27 (241)
464 2cbz_A Multidrug resistance-as 85.8 0.35 1.2E-05 50.8 2.8 24 465-488 32-55 (237)
465 4tmk_A Protein (thymidylate ki 85.8 2.2 7.5E-05 43.9 8.9 34 466-499 5-39 (213)
466 2d2e_A SUFC protein; ABC-ATPas 85.8 0.4 1.4E-05 50.8 3.3 23 465-487 30-52 (250)
467 3cwq_A Para family chromosome 85.8 0.88 3E-05 46.5 5.8 37 466-503 2-39 (209)
468 2f9l_A RAB11B, member RAS onco 85.8 0.41 1.4E-05 48.1 3.3 22 466-487 7-28 (199)
469 1b0u_A Histidine permease; ABC 85.8 0.35 1.2E-05 51.6 2.9 34 465-499 33-66 (262)
470 2kat_A Uncharacterized protein 85.8 4.9 0.00017 35.5 10.4 33 932-964 53-85 (115)
471 2wji_A Ferrous iron transport 85.8 0.43 1.5E-05 46.4 3.3 21 466-486 5-25 (165)
472 3cv0_A Peroxisome targeting si 85.8 2.2 7.6E-05 44.9 9.3 60 931-990 239-302 (327)
473 4akg_A Glutathione S-transfera 85.7 4.1 0.00014 56.7 13.8 89 161-257 875-964 (2695)
474 3gfo_A Cobalt import ATP-bindi 85.7 0.35 1.2E-05 52.0 2.9 34 465-499 35-68 (275)
475 2oze_A ORF delta'; para, walke 85.7 0.64 2.2E-05 50.1 5.0 38 466-503 36-76 (298)
476 2zu0_C Probable ATP-dependent 85.6 0.42 1.4E-05 51.2 3.4 23 465-487 47-69 (267)
477 2xpi_A Anaphase-promoting comp 85.6 1.5 5E-05 51.4 8.4 57 932-990 475-532 (597)
478 3k9g_A PF-32 protein; ssgcid, 85.6 0.66 2.2E-05 49.2 4.9 38 465-503 28-66 (267)
479 2lni_A Stress-induced-phosphop 85.6 1.5 5.2E-05 39.3 6.8 51 932-990 50-100 (133)
480 4g1u_C Hemin import ATP-bindin 85.5 0.36 1.2E-05 51.7 2.8 33 465-498 38-70 (266)
481 1ji0_A ABC transporter; ATP bi 85.5 0.37 1.3E-05 50.7 2.8 34 465-499 33-66 (240)
482 2zej_A Dardarin, leucine-rich 85.5 0.36 1.2E-05 47.9 2.6 20 467-486 5-24 (184)
483 1bif_A 6-phosphofructo-2-kinas 85.5 0.63 2.2E-05 54.0 5.1 28 465-492 40-67 (469)
484 3tqf_A HPR(Ser) kinase; transf 85.3 0.39 1.3E-05 47.9 2.7 22 466-487 18-39 (181)
485 1g6h_A High-affinity branched- 85.3 0.38 1.3E-05 51.2 2.8 34 465-499 34-67 (257)
486 2olj_A Amino acid ABC transpor 85.2 0.39 1.3E-05 51.4 2.9 34 465-499 51-84 (263)
487 3qf4_A ABC transporter, ATP-bi 85.2 1.1 3.7E-05 53.6 7.1 35 465-500 370-404 (587)
488 3bfv_A CAPA1, CAPB2, membrane 85.2 0.83 2.8E-05 48.9 5.5 40 464-503 82-122 (271)
489 1wcv_1 SOJ, segregation protei 85.1 0.59 2E-05 49.4 4.2 39 465-503 7-46 (257)
490 2pze_A Cystic fibrosis transme 85.0 0.41 1.4E-05 50.0 2.9 24 465-488 35-58 (229)
491 1sgw_A Putative ABC transporte 85.0 0.36 1.2E-05 49.9 2.4 23 465-487 36-58 (214)
492 1svm_A Large T antigen; AAA+ f 84.9 0.5 1.7E-05 53.2 3.7 24 465-488 170-193 (377)
493 2ff7_A Alpha-hemolysin translo 84.9 0.4 1.4E-05 50.7 2.8 35 465-500 36-70 (247)
494 2dyk_A GTP-binding protein; GT 84.9 0.58 2E-05 44.7 3.7 22 466-487 3-24 (161)
495 1mv5_A LMRA, multidrug resista 84.8 0.42 1.4E-05 50.4 2.9 23 465-487 29-51 (243)
496 4hlc_A DTMP kinase, thymidylat 84.8 0.93 3.2E-05 46.4 5.4 31 466-496 4-34 (205)
497 3cio_A ETK, tyrosine-protein k 84.8 0.81 2.8E-05 49.8 5.2 39 464-502 104-143 (299)
498 3gmt_A Adenylate kinase; ssgci 84.7 0.58 2E-05 48.9 3.8 23 466-488 10-32 (230)
499 2p67_A LAO/AO transport system 84.7 0.77 2.6E-05 50.9 5.1 38 464-501 56-93 (341)
500 1vpl_A ABC transporter, ATP-bi 84.7 0.43 1.5E-05 50.8 2.9 23 465-487 42-64 (256)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.4e-46 Score=384.22 Aligned_cols=172 Identities=17% Similarity=0.293 Sum_probs=147.8
Q ss_pred ccccccCCCccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCc
Q 001919 150 SVSLSCNRLRSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFR 229 (996)
Q Consensus 150 s~~~s~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~ 229 (996)
++||++.+.++|||||||||+| +|++|++|||++|+++||+||+||+++.+|+.+.+.|.+||++|+++|||||+|||+
T Consensus 25 ~~~s~~~~~~~yDVFISfrg~D-~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~ 103 (204)
T 3ozi_A 25 TNPSGSFPSVEYEVFLSFRGPD-TREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103 (204)
T ss_dssp ---------CCCCEEEEECHHH-HTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred CCCcCCCCCcCCeEEEeccccC-CCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence 4555667889999999999999 489999999999999999999999988888888877789999999999999999999
Q ss_pred CcccHHHHHhhhcC------CceEeeeecCCCCchhhHHHHhhhhhhHHhhccchhhhhhhhhHHHHHHHhhhhcccccc
Q 001919 230 NPYSIEELRYFSGK------KNLVPIFFDLSPGDCLVRDIVEKRGELWEKNGGELWVLYGGLEKEWKEAVNGLSRVDEWK 303 (996)
Q Consensus 230 S~wCL~EL~~i~~~------~~v~PvFy~vdPs~~~vr~~~~~~g~~~~~~~~~~~~~~~~~~~~W~eal~~~~~~~~w~ 303 (996)
|+|||+||++||+| +.||||||+||||| ||+|++.||++|.+|...|. .+..++|++||+.++++.||+
T Consensus 104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~--Vr~q~g~fg~af~~~~~~~~---~~~v~~Wr~AL~~va~lsG~~ 178 (204)
T 3ozi_A 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSD--VRHQTGCYKKAFRKHANKFD---GQTIQNWKDALKKVGDLKGWH 178 (204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHH--HHHTCTTHHHHHHHHTTTSC---HHHHHHHHHHHHHHHTSCBEE
T ss_pred CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHH--HHhccccHHHHHHHHHHhhC---HHHHHHHHHHHHHHhccCcee
Confidence 99999999999964 35999999999999 99999999999999986541 246799999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhHHhcC
Q 001919 304 LEAQEGNCRDCILRAVTLLAMKLGR 328 (996)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~~~~~l~~ 328 (996)
+. .+.+....|++||..+..+|++
T Consensus 179 ~~-~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 179 IG-KNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp EC-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 83 5566678899999999888853
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-45 Score=368.74 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=134.9
Q ss_pred ccCCCccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCccc
Q 001919 154 SCNRLRSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYS 233 (996)
Q Consensus 154 s~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wC 233 (996)
|++..|+|||||||||+|| |++|++|||++|+++||+||+||+++.+|+.+.+.+.+||++|+++|||||+|||+|+||
T Consensus 2 sss~~~~yDVFiSfrg~D~-r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC 80 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDT-RHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC 80 (176)
T ss_dssp -----CCEEEEEEECHHHH-TTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred CCCCCCCCeEEEECcCccc-ChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence 3456799999999999995 899999999999999999999999899888888888899999999999999999999999
Q ss_pred HHHHHhhhcC-----CceEeeeecCCCCchhhHHHHhhhhhhHHhhccchhhhhhhhhHHHHHHHhhhhccccccccccc
Q 001919 234 IEELRYFSGK-----KNLVPIFFDLSPGDCLVRDIVEKRGELWEKNGGELWVLYGGLEKEWKEAVNGLSRVDEWKLEAQE 308 (996)
Q Consensus 234 L~EL~~i~~~-----~~v~PvFy~vdPs~~~vr~~~~~~g~~~~~~~~~~~~~~~~~~~~W~eal~~~~~~~~w~~~~~~ 308 (996)
|+||++|++| +.||||||+||||| ||+|++.||++|.+|... ...+..++|++||+.++++.||++ .
T Consensus 81 l~EL~~i~~~~~~~~~~ViPIfy~V~ps~--Vr~q~g~fg~af~~~~~~---~~~~~~~~Wr~AL~~va~~~G~~~---~ 152 (176)
T 3jrn_A 81 LDELVTIMDFEKKGSITVMPIFYGVEPNH--VRWQTGVLAEQFKKHASR---EDPEKVLKWRQALTNFAQLSGDCS---G 152 (176)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEECSSCHHH--HHHTCTHHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSCCEEC---C
T ss_pred HHHHHHHHhhhccCCCEEEEEEecCCHHH--hhhccCcHHHHHHHHHhc---cCHHHHHHHHHHHHHHhcccceec---C
Confidence 9999999975 46999999999999 999999999999999864 233467999999999999999998 3
Q ss_pred cchHHHHHHHHHHHhHHhcC
Q 001919 309 GNCRDCILRAVTLLAMKLGR 328 (996)
Q Consensus 309 ~~~~~~i~~~~~~~~~~l~~ 328 (996)
.+..+.|++||..+..+|+.
T Consensus 153 ~~e~~~i~~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 153 DDDSKLVDKIANEISNKKTI 172 (176)
T ss_dssp SCHHHHHHHHHHHHHTTCC-
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 66888999999999888854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-31 Score=348.07 Aligned_cols=318 Identities=12% Similarity=0.142 Sum_probs=234.7
Q ss_pred ccCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHH---hcCC-CEEEEEeCc
Q 001919 426 KESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRY---HQRY-KMVLWVGGE 501 (996)
Q Consensus 426 ~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~---~~~F-~~v~wi~~~ 501 (996)
..|.+...|+||+.+++++.+ .+.... .+.++|+|+|||||||||||++++++. ..+| ++++|++..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~------~l~~~~---~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQ------KLWKLN---GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHH------HHHTTT---TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCCceeccHHHHHHHHHH------HHhhcc---CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 466777889999999999984 121111 245789999999999999999999863 4556 689999987
Q ss_pred Cc---cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCC--CEEEEEcCCCCcccccchHHHhh
Q 001919 502 SR---YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNI--PFLVIIDNLESEKDWWDDKLVMD 576 (996)
Q Consensus 502 ~~---~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--r~LLVLDdvd~~~~~~~~~~L~~ 576 (996)
.. .....+..+...+........ ....+..+....++..| ..+ |||||||||++. .++..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~------~~~~~ 253 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQ--------RLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDP------WVLKA 253 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCS--------SCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCH------HHHTT
T ss_pred CcCchHHHHHHHHHHHHhhhhccccc--------CCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCH------HHHHh
Confidence 64 334445556666554321110 01124566777888888 555 999999999976 45544
Q ss_pred hccCCCCCeEEEEEecCCCcCC-----cceEEccC-CCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHH
Q 001919 577 LLPRFGGETHIIISTRLPRVMN-----LEPLKLSY-LSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGA 650 (996)
Q Consensus 577 ~lp~~~~gsrIIITTR~~~~~~-----~~~~~v~~-L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs 650 (996)
+ ++|++||||||++.+.. ...++|++ |+.+||++||+..++..+....+.+++|+++|+|+||||+++|+
T Consensus 254 ~----~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 329 (1249)
T 3sfz_A 254 F----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGA 329 (1249)
T ss_dssp T----CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHH
T ss_pred h----cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 46899999999998742 27899996 99999999999998765556667799999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHHHHHHHHhcccc-CCCCCCHH
Q 001919 651 ILSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWF-APAAIPVS 729 (996)
Q Consensus 651 ~L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff-~~~~Ip~~ 729 (996)
+|+.+..+|.+|++.|.+.....+..... .....+.++|++||+.|+... +.+|..+++| .+..|+..
T Consensus 330 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~s~~~L~~~~------~~~~~~l~~f~~~~~i~~~ 398 (1249)
T 3sfz_A 330 LLRDFPNRWAYYLRQLQNKQFKRIRKSSS-----YDYEALDEAMSISVEMLREDI------KDYYTDLSILQKDVKVPTK 398 (1249)
T ss_dssp HHHHSSSCHHHHHHHHHSCCCCCSSCTTC-----TTHHHHHHHHHHHHHTSCTTT------HHHHHHGGGSCTTCCEEHH
T ss_pred HhhcChhHHHHHHHHHhhhhhhhcccccc-----cchHHHHHHHHHHHHhCCHHH------HHHHHHhCccCCCCeeCHH
Confidence 99998889999999998865433221111 123468899999999996532 4555556655 44578887
Q ss_pred HHHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeCCCC--eEEEcHHHHHHHHHhCChH
Q 001919 730 LLALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSSTRQG--YIHFNDLVKLYARKRGVTG 807 (996)
Q Consensus 730 ll~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~~~~--~i~mH~Lvq~~~r~~l~~~ 807 (996)
.+... | + .+...+...++.|+++|||+....++ +|.||+|||+++++++.++
T Consensus 399 ~~~~~-------------~---------~----~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 399 VLCVL-------------W---------D----LETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHH-------------H---------T----CCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHH-------------h---------C----CCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 76552 2 0 12456788999999999998765333 4999999999999998654
Q ss_pred H
Q 001919 808 V 808 (996)
Q Consensus 808 ~ 808 (996)
.
T Consensus 453 ~ 453 (1249)
T 3sfz_A 453 L 453 (1249)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=1.6e-30 Score=312.70 Aligned_cols=327 Identities=12% Similarity=0.080 Sum_probs=220.4
Q ss_pred cCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHH----HHhcCCCEEEEEeCcC
Q 001919 427 ESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAY----RYHQRYKMVLWVGGES 502 (996)
Q Consensus 427 ~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~----~~~~~F~~v~wi~~~~ 502 (996)
.|.....| ||+.+++++.+ .+.... ....++|+|+|||||||||||+++|+ +++.+|++++|++...
T Consensus 124 ~p~~~~~~-GR~~~~~~l~~------~L~~~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~ 194 (549)
T 2a5y_B 124 VPKQMTCY-IREYHVDRVIK------KLDEMC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194 (549)
T ss_dssp CBCCCCSC-CCHHHHHHHHH------HHHHHT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred CCCCCccC-CchHHHHHHHH------HHhccc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence 34333335 99999999874 121110 11357999999999999999999997 6788999999998765
Q ss_pred c---cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCC-CEEEEEcCCCCcccccchHHHhhhc
Q 001919 503 R---YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNI-PFLVIIDNLESEKDWWDDKLVMDLL 578 (996)
Q Consensus 503 ~---~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-r~LLVLDdvd~~~~~~~~~~L~~~l 578 (996)
. .....+..+...++......... ... ..+.......++++| .++ |||||||||++. +++ .+
T Consensus 195 ~~~~~~~~~~~~il~~l~~~~~~~~~~---~~~--~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~------~~~--~~ 260 (549)
T 2a5y_B 195 TAPKSTFDLFTDILLMLKSEDDLLNFP---SVE--HVTSVVLKRMICNAL-IDRPNTLFVFDDVVQE------ETI--RW 260 (549)
T ss_dssp CSTTHHHHHHHHHHHHHTTTSCCTTCC---CCT--TCCHHHHHHHHHHHH-TTSTTEEEEEEEECCH------HHH--HH
T ss_pred CCCCCHHHHHHHHHHHHhcCccccccc---ccc--cccHHHHHHHHHHHH-cCCCcEEEEEECCCCc------hhh--cc
Confidence 4 35666677777776542100000 000 113456678899999 775 999999999986 343 22
Q ss_pred cCCCCCeEEEEEecCCCcCC----c-ceEEccCCCHHHHHHHHhhhcCCCC--cccHHHHHHHHHHhCCChHHHHHHHHH
Q 001919 579 PRFGGETHIIISTRLPRVMN----L-EPLKLSYLSGVEAMSLMQGSVKDYP--ITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 579 p~~~~gsrIIITTR~~~~~~----~-~~~~v~~L~~~EA~~Lf~~~a~~~~--~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
+.. +||+||||||++.++. . .+|+|++|+.+||++||+++++..+ +...+.+++|+++|+|+||||+++|+.
T Consensus 261 ~~~-~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~ 339 (549)
T 2a5y_B 261 AQE-LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKS 339 (549)
T ss_dssp HHH-TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred ccc-CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 222 5899999999988742 2 5799999999999999999998544 456678999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHhcC----CCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHHHHHHHHhccccC-CCCC
Q 001919 652 LSELPINPSRLLDTINRM----PLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWFA-PAAI 726 (996)
Q Consensus 652 L~~~~~s~~e~l~~L~~~----~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff~-~~~I 726 (996)
|+.+ +| ++++.+... ....+ . .........+...++.+|..|+ +.++.+|..|++|. +..|
T Consensus 340 l~~~--~w-~~~~~l~~~l~~~~~~~i----~-~~l~~Sy~~L~~~lk~~f~~Ls------~~er~l~~~ls~fp~~~~i 405 (549)
T 2a5y_B 340 CEPK--TF-EKMAQLNNKLESRGLVGV----E-CITPYSYKSLAMALQRCVEVLS------DEDRSALAFAVVMPPGVDI 405 (549)
T ss_dssp CCSS--SH-HHHHHHHHHHHHHCSSTT----C-CCSSSSSSSHHHHHHHHHHTSC------HHHHHHTTGGGSSCTTCCE
T ss_pred hccc--hH-HHHHHhHHHhhcccHHHH----H-HHHhcccccccHHHHHHHhccc------hhhhhHhhheeeeCCCCee
Confidence 8755 45 344555432 11100 0 0000112235667888888884 45678888888884 3456
Q ss_pred CHHHHHHHh-ccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeC--CCCeEEEcHHHHHHHHHh
Q 001919 727 PVSLLALAA-HKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSST--RQGYIHFNDLVKLYARKR 803 (996)
Q Consensus 727 p~~ll~~~~-~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~--~~~~i~mH~Lvq~~~r~~ 803 (996)
+..+..... ..+... + ...+..++.+.++.|+++|||+... ...+|.||+||++|++..
T Consensus 406 ~i~~w~a~~~G~i~~~----------------~--~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~ 467 (549)
T 2a5y_B 406 PVKLWSCVIPVDICSN----------------E--EEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHV 467 (549)
T ss_dssp EHHHHHHHSCC-------------------------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTT
T ss_pred eeeeeeeeccceeccC----------------C--CCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHH
Confidence 633322210 111100 0 0012344556999999999998654 235799999999999998
Q ss_pred CChHHH
Q 001919 804 GVTGVA 809 (996)
Q Consensus 804 l~~~~~ 809 (996)
...+..
T Consensus 468 ~~~~~~ 473 (549)
T 2a5y_B 468 VDAQTI 473 (549)
T ss_dssp SCTHHH
T ss_pred HHHHHH
Confidence 876544
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=311.67 Aligned_cols=317 Identities=13% Similarity=0.136 Sum_probs=225.5
Q ss_pred ccCccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHH---hcCC-CEEEEEeCc
Q 001919 426 KESEKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRY---HQRY-KMVLWVGGE 501 (996)
Q Consensus 426 ~~~~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~---~~~F-~~v~wi~~~ 501 (996)
+.|.+...||||+.+++++.+. +... ..+.++|+|+|||||||||||.+++++. ...| ++++|++..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~------L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQK------LSKL---KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHH------HTTS---TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCCCeecccHHHHHHHHHH------Hhcc---cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 4566777899999999999841 1110 1135789999999999999999999854 6779 589999876
Q ss_pred CccH---HHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhc-CCCEEEEEcCCCCcccccchHHHhhh
Q 001919 502 SRYI---RQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMR-NIPFLVIIDNLESEKDWWDDKLVMDL 577 (996)
Q Consensus 502 ~~~~---~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~~~~~~~~~L~~~ 577 (996)
.... ...+..+...++........ ...+.......++..|.. .+++|||||||++. .++..+
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~------~~l~~l 254 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQR--------LPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS------WVLKAF 254 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSS--------CCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH------HHHHTT
T ss_pred CCchHHHHHHHHHHHHHhccccccccC--------CCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH------HHHHHh
Confidence 5422 33344444444421110000 012455677788888833 37999999999875 455443
Q ss_pred ccCCCCCeEEEEEecCCCcCC---cceEEc---cCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHH
Q 001919 578 LPRFGGETHIIISTRLPRVMN---LEPLKL---SYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 578 lp~~~~gsrIIITTR~~~~~~---~~~~~v---~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
++|++||||||++.+.. ...++| ++|+.+||.+||...++.......+.+.+|+++|+|+||||+++|++
T Consensus 255 ----~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 255 ----DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp ----CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 46899999999987642 245555 58999999999999987543344567899999999999999999999
Q ss_pred HhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHHHHHHHHhcccc-CCCCCCHHH
Q 001919 652 LSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSLATRMVLAGGWF-APAAIPVSL 730 (996)
Q Consensus 652 L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~A~~lL~ilaff-~~~~Ip~~l 730 (996)
|+.+...|.++++.|.+.....+... ....+..+..+|+.||+.|+.. .+.+|..+++| .+..|+...
T Consensus 331 l~~~~~~w~~~l~~l~~~~~~~~~~~-----~~~~~~~l~~~l~~s~~~L~~~------~~~~l~~la~f~~~~~i~~~~ 399 (591)
T 1z6t_A 331 LRDFPNRWEYYLKQLQNKQFKRIRKS-----SSYDYEALDEAMSISVEMLRED------IKDYYTDLSILQKDVKVPTKV 399 (591)
T ss_dssp HHHSTTCHHHHHHHHHSCCCCCSSCC-----CSSCCHHHHHHHHHHHHTSCTT------THHHHHHGGGCCTTCCEEHHH
T ss_pred HhcCchhHHHHHHHHHHhHHHHhhhc-----cccchHHHHHHHHHHHHhCCHH------HHHHHHHccccCCCCccCHHH
Confidence 99887789999999987543222110 1123457889999999999653 24566666666 445788877
Q ss_pred HHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeCCC--CeEEEcHHHHHHHHHhCCh
Q 001919 731 LALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSSTRQ--GYIHFNDLVKLYARKRGVT 806 (996)
Q Consensus 731 l~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~~~--~~i~mH~Lvq~~~r~~l~~ 806 (996)
+..... .+..++...+..|.++|||....++ ..|.||+|+++++++++..
T Consensus 400 l~~l~~--------------------------~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~ 451 (591)
T 1z6t_A 400 LCILWD--------------------------METEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCS 451 (591)
T ss_dssp HHHHHT--------------------------CCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGG
T ss_pred HHHHhc--------------------------cCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhh
Confidence 654211 0134577899999999999865432 3799999999999999653
No 6
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.4e-29 Score=253.32 Aligned_cols=113 Identities=18% Similarity=0.288 Sum_probs=100.7
Q ss_pred cCCCccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccH
Q 001919 155 CNRLRSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSI 234 (996)
Q Consensus 155 ~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL 234 (996)
.+..++|||||||+|+| |..|+.||+.+|+++||++|+|++.+..|+.+.+.+.++|++|++.|||||+||++|.||+
T Consensus 15 ~~~~~~~dvFISy~~~D--~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~ 92 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED--KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQ 92 (154)
T ss_dssp ---CCSEEEEEEEEGGG--TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCH
T ss_pred cCCCCCceEEEECcccC--hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHH
Confidence 45679999999999999 5899999999999999999999988888888888889999999999999999999999999
Q ss_pred HHHHhhhcC-----CceEeeeecCCCCchhhHHHHhhhhhhH
Q 001919 235 EELRYFSGK-----KNLVPIFFDLSPGDCLVRDIVEKRGELW 271 (996)
Q Consensus 235 ~EL~~i~~~-----~~v~PvFy~vdPs~~~vr~~~~~~g~~~ 271 (996)
+||.+|++| +.||||||+|+|+| ||++.+.+|+.+
T Consensus 93 ~El~~~~~~~~~~~~~iiPV~~~v~p~~--v~~~~~~~~~~~ 132 (154)
T 3h16_A 93 KELDGLFQLESSGRSRILPIWHKVSKDE--VASFSPTMADKL 132 (154)
T ss_dssp HHHHHHTCCCTTSCCCEEEEEESCCTGG--GTTTCCCCCSSC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecCCHHH--HhhCCccHHHHH
Confidence 999999976 36999999999999 887776655444
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=2.3e-27 Score=291.20 Aligned_cols=290 Identities=14% Similarity=0.107 Sum_probs=201.7
Q ss_pred ccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHH--HHhcCCC-EEEEEeCcCc-cHHHHH
Q 001919 434 MQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAY--RYHQRYK-MVLWVGGESR-YIRQNY 509 (996)
Q Consensus 434 fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~--~~~~~F~-~v~wi~~~~~-~~~~~l 509 (996)
.+||+.+++++.+ .+... .+.++|+|+|||||||||||+++++ +++.+|+ +++|++.... .....+
T Consensus 130 ~VGRe~eLeeL~e------lL~~~----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL 199 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQ------ALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199 (1221)
T ss_dssp CCCCHHHHHHHHH------HHHHC----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHH
T ss_pred CCCcHHHHHHHHH------HHhcc----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHH
Confidence 3999999999974 12111 1346999999999999999999997 5778897 4999998766 665666
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh--cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001919 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM--RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
..|+..++............ ......+.++....+++.|. .++|+|||||||++. +++..+ + +||+|
T Consensus 200 ~~Ll~lL~~i~~~~~~~~d~-~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~------eqLe~f-~---pGSRI 268 (1221)
T 1vt4_I 200 EMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA------KAWNAF-N---LSCKI 268 (1221)
T ss_dssp HHHHHHHHHHCSSSTTTSCC-CSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH------HHHHHH-H---SSCCE
T ss_pred HHHHHHHhhcCccccccccc-ccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH------HHHHhh-C---CCeEE
Confidence 66666543321100000000 00011133455666777662 579999999999985 445443 3 58999
Q ss_pred EEEecCCCcCC---c-ceEEcc------CCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHHHHHHHHHHhcCCC
Q 001919 588 IISTRLPRVMN---L-EPLKLS------YLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMGLAVVGAILSELPI 657 (996)
Q Consensus 588 IITTR~~~~~~---~-~~~~v~------~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL~~~gs~L~~~~~ 657 (996)
|||||++.+.. . ..|+|+ +|+.+||++||+.+.... ..++..+ .|+|+||||+++|++|+.+..
T Consensus 269 LVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~---~eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp EEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC---TTTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred EEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC---HHHHHHH---HhCCCHHHHHHHHHHHhCCCC
Confidence 99999998752 2 467777 999999999999985432 2333333 499999999999999998765
Q ss_pred CHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHH-HHHHHHhccccCCCCCCHHHHHHHhc
Q 001919 658 NPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSL-ATRMVLAGGWFAPAAIPVSLLALAAH 736 (996)
Q Consensus 658 s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~-A~~lL~ilaff~~~~Ip~~ll~~~~~ 736 (996)
++++|... .+..+..+|++||+.|... . ...|+.+++|+.+..|+...+...
T Consensus 343 s~eeW~~~--------------------~~~~I~aaLelSYd~Lp~e-----elK~cFL~LAIFPed~~I~~elLa~L-- 395 (1221)
T 1vt4_I 343 TWDNWKHV--------------------NCDKLTTIIESSLNVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLI-- 395 (1221)
T ss_dssp SHHHHHHC--------------------SCHHHHHHHHHHHHHSCTT-----HHHHHHHHTTSSCTTSCEEHHHHHHH--
T ss_pred CHHHHhcC--------------------ChhHHHHHHHHHHHhCCHH-----HHHHHHHHHhCCCCCCCCCHHHHHHH--
Confidence 67766431 1346889999999999652 3 456666666666667887766542
Q ss_pred cCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeCCCCeEEEcHHHHHHH
Q 001919 737 KIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSSTRQGYIHFNDLVKLYA 800 (996)
Q Consensus 737 ~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~~~~~i~mH~Lvq~~~ 800 (996)
|. +. ...+....++.|.++|||+.+...++|+||+|++++.
T Consensus 396 -----------W~-------ae-----GeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 396 -----------WF-------DV-----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp -----------HC-------SS-----CSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred -----------hc-------CC-----CHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 20 00 0134678999999999998865567899999998843
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.83 E-value=1.7e-22 Score=199.42 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=73.9
Q ss_pred cCCCccceeEeeccCCCccccchHHHHHHHHHH--cCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcc
Q 001919 155 CNRLRSCDVFIGLHGCKPSLMRFANWLRAELEV--QGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPY 232 (996)
Q Consensus 155 ~~~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~--~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~w 232 (996)
....+.|||||||+|+|+ .|+.||+.+|++ +||++|+||+....|+.+.+.+.+||++|++.|||||+||++|.|
T Consensus 5 ~r~~k~YDvFISy~~~D~---~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL---VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CTTSSSEEEEEECCGGGH---HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCcceEEEeCChhhH---HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 445678999999999993 689999999998 699999999888888777766678999999999999999999999
Q ss_pred cHHHHHhhhcC-----CceEeeeecCCCCc
Q 001919 233 SIEELRYFSGK-----KNLVPIFFDLSPGD 257 (996)
Q Consensus 233 CL~EL~~i~~~-----~~v~PvFy~vdPs~ 257 (996)
|+.||..++.+ +.||||||+|++.+
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~ 111 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAA 111 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGG
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhh
Confidence 99999998753 36899999999655
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.76 E-value=6.1e-20 Score=182.09 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=85.8
Q ss_pred CCccceeEeeccCCCccccchHHH-HHHHHHHc--CCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCccc
Q 001919 157 RLRSCDVFIGLHGCKPSLMRFANW-LRAELEVQ--GMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYS 233 (996)
Q Consensus 157 ~~~~~dVFlsfrG~d~~r~~F~~h-L~~~L~~~--gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wC 233 (996)
+.+.|||||||+|+|+ +|+.| |+.+|+++ ||++|+|++....|+.+.+.+.++|++|++.|||||+||++|.||
T Consensus 2 ~~~~yDvFiSy~~~D~---~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc 78 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA---YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWX 78 (149)
T ss_dssp CSCCEEEEEECCGGGH---HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred CCccceEEEECCcccH---HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchH
Confidence 3578999999999993 79997 99999987 999999998888888788888899999999999999999999999
Q ss_pred HHHHHhhhc------CCceEeeeec-CCCC
Q 001919 234 IEELRYFSG------KKNLVPIFFD-LSPG 256 (996)
Q Consensus 234 L~EL~~i~~------~~~v~PvFy~-vdPs 256 (996)
+.||..++. ++.||||||+ |++.
T Consensus 79 ~~El~~a~~~~~~~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 79 KYELDFSHFRLFDENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence 999998763 3469999995 6554
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.74 E-value=4.9e-19 Score=180.24 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=85.3
Q ss_pred cCCCccceeEeeccCCCccccchHHH-HHHHHHH--cCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCc
Q 001919 155 CNRLRSCDVFIGLHGCKPSLMRFANW-LRAELEV--QGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNP 231 (996)
Q Consensus 155 ~~~~~~~dVFlsfrG~d~~r~~F~~h-L~~~L~~--~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~ 231 (996)
....+.|||||||+|+| .+|+.+ |+.+|++ +||++|+|++....|+.+.+.+.++|++|++.|||||+||++|.
T Consensus 30 ~~~~~~yDvFISys~~D---~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD---SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp CCCSCCEEEEEECCGGG---HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred cCCCccceEEEECCCCC---HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 34568899999999999 389985 9999999 99999999988888887888888999999999999999999999
Q ss_pred ccHHHHHhhhcC------CceEeeeecCCC
Q 001919 232 YSIEELRYFSGK------KNLVPIFFDLSP 255 (996)
Q Consensus 232 wCL~EL~~i~~~------~~v~PvFy~vdP 255 (996)
||+.||..++.+ +.||||||+--|
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998752 369999997433
No 11
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.74 E-value=2.6e-19 Score=179.50 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCccceeEeeccCCCccccchHHHHHHHHHHc--CCceeecCccccCCCCcHHHHHHHhh-cceEEEEEEcCCCCcCccc
Q 001919 157 RLRSCDVFIGLHGCKPSLMRFANWLRAELEVQ--GMSCFVSDRARCRNSRKHAIVERAMD-ISSFGVVILTRKSFRNPYS 233 (996)
Q Consensus 157 ~~~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~--gI~~F~dd~~~~~~~~~~~~~~~ai~-~S~i~ivv~S~nya~S~wC 233 (996)
..+.|||||||+|+| .+|+.||+.+|+++ ||++|+|++....|+.+.+.+.++|+ .|++.|||||+||++|.||
T Consensus 13 ~~~~yDvFISys~~D---~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 13 MPERFDAFICYCPSD---IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CTTCEEEEEECCGGG---HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCcceEEEEEccccc---HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 357899999999999 58999999999995 69999999888877766666678998 6999999999999999999
Q ss_pred HHHHHhhhcC------CceEeeeecCCC
Q 001919 234 IEELRYFSGK------KNLVPIFFDLSP 255 (996)
Q Consensus 234 L~EL~~i~~~------~~v~PvFy~vdP 255 (996)
+.||..++++ +.||||||++-+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999863 369999998754
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=172.60 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=84.8
Q ss_pred ccceeEeeccCCCcc--------ccchHHHHHH-HHH-HcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCC
Q 001919 159 RSCDVFIGLHGCKPS--------LMRFANWLRA-ELE-VQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSF 228 (996)
Q Consensus 159 ~~~dVFlsfrG~d~~--------r~~F~~hL~~-~L~-~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya 228 (996)
+.|||||||+|+|+. |.+|++||+. .|+ ++|+++|+|++....|+.+.+.+.++|++|+..|||||+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 469999999999941 5789999887 599 799999999988877777777778999999999999999996
Q ss_pred -cCcccHHHHHhhhc------CCceEeeeecCCCCc
Q 001919 229 -RNPYSIEELRYFSG------KKNLVPIFFDLSPGD 257 (996)
Q Consensus 229 -~S~wCL~EL~~i~~------~~~v~PvFy~vdPs~ 257 (996)
+|.||+.||..++. ...||||||.-.|..
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 99999999988764 346999999877754
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=1.4e-13 Score=154.69 Aligned_cols=298 Identities=10% Similarity=0.004 Sum_probs=173.8
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-------
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR------- 503 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~------- 503 (996)
...|+||+.+++++.+ .+.. + +++.|+|++|+|||+|+++++++.. ++|+++...
T Consensus 11 ~~~~~gR~~el~~L~~------~l~~------~-~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 11 REDIFDREEESRKLEE------SLEN------Y-PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHI 72 (350)
T ss_dssp GGGSCSCHHHHHHHHH------HHHH------C-SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCB
T ss_pred hHhcCChHHHHHHHHH------HHhc------C-CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCC
Confidence 4579999999999873 1111 1 4799999999999999999998752 778875422
Q ss_pred cHHHHHHHHHHHccCc----------cCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc---c
Q 001919 504 YIRQNYLNLWSFLDVD----------VGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW---D 570 (996)
Q Consensus 504 ~~~~~l~~La~~L~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~---~ 570 (996)
+....+..+...+... ....+. .......+..+....+.+.+...++++|||||++....+. +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFL----TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG----TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecce----eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch
Confidence 2233344444444320 000000 0000011344555666655532349999999999764310 0
Q ss_pred ---hHHHhhhccCCCCCeEEEEEecCCCc--------------C-Cc-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHH
Q 001919 571 ---DKLVMDLLPRFGGETHIIISTRLPRV--------------M-NL-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDA 630 (996)
Q Consensus 571 ---~~~L~~~lp~~~~gsrIIITTR~~~~--------------~-~~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~ 630 (996)
...|..++... ++.++|+|++...+ . .. ..+++.+|+.+|+.+++........ ....+.
T Consensus 149 ~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~ 227 (350)
T 2qen_A 149 KELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred hhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 02233333222 36899999875321 1 11 4799999999999999987543211 123456
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHHHHHHHhccccCCCCHH
Q 001919 631 LRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFEVCFSIFDHADGPRSL 710 (996)
Q Consensus 631 a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~iS~~~L~~~~~~~~~ 710 (996)
+..+++.++|+|++|..++..+... .+..+++..+.+ .+...+.-.+..+.. . .+.
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~l~~l~~--~-~~~ 283 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRN-GDFGRAMKRTLE--------------------VAKGLIMGELEELRR--R-SPR 283 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--H-CHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhcc-ccHhHHHHHHHH--------------------HHHHHHHHHHHHHHh--C-Chh
Confidence 8899999999999999998765431 233333333211 011111111222211 0 355
Q ss_pred HHHHHHhccccCCCCCCHHHHHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeCCCCeE
Q 001919 711 ATRMVLAGGWFAPAAIPVSLLALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSSTRQGYI 790 (996)
Q Consensus 711 A~~lL~ilaff~~~~Ip~~ll~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~~~~~i 790 (996)
.+.+|..++. ++ .+...+...... ..+ ..+...+...++.|.+.+||.... +.|
T Consensus 284 ~~~~l~~la~-g~--~~~~~l~~~~~~------------------~~~---~~~~~~~~~~l~~L~~~gli~~~~--~~y 337 (350)
T 2qen_A 284 YVDILRAIAL-GY--NRWSLIRDYLAV------------------KGT---KIPEPRLYALLENLKKMNWIVEED--NTY 337 (350)
T ss_dssp HHHHHHHHHT-TC--CSHHHHHHHHHH------------------TTC---CCCHHHHHHHHHHHHHTTSEEEET--TEE
T ss_pred HHHHHHHHHh-CC--CCHHHHHHHHHH------------------HhC---CCCHHHHHHHHHHHHhCCCEEecC--CEE
Confidence 6778888776 32 444444321100 000 012345778999999999998753 677
Q ss_pred EE-cHHHHHHHH
Q 001919 791 HF-NDLVKLYAR 801 (996)
Q Consensus 791 ~m-H~Lvq~~~r 801 (996)
.+ |++++.+.|
T Consensus 338 ~~~~p~~~~~~~ 349 (350)
T 2qen_A 338 KIADPVVATVLR 349 (350)
T ss_dssp EESSHHHHHHHT
T ss_pred EEecHHHHHHHc
Confidence 76 899998875
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=4e-13 Score=151.09 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=168.0
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC------cc
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES------RY 504 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~------~~ 504 (996)
...|+||+.+++++.+ .. . ++|.|+|++|+|||+|+++++++.... ++|+++.. .+
T Consensus 12 ~~~~~gR~~el~~L~~-l~-------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR-------------A-PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYIS 73 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC-------------S-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCC
T ss_pred HHHhcChHHHHHHHHH-hc-------------C-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCC
Confidence 3579999999999982 21 1 479999999999999999999887532 57887653 12
Q ss_pred HHHHHHHHHHHcc--------------CccCcccCCcccccchhhhcHHHHHHHHHHHHhc-C-CCEEEEEcCCCCcccc
Q 001919 505 IRQNYLNLWSFLD--------------VDVGIENCSDKSRIKSFEEQEEAAICRVRKELMR-N-IPFLVIIDNLESEKDW 568 (996)
Q Consensus 505 ~~~~l~~La~~L~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~r~LLVLDdvd~~~~~ 568 (996)
....+..+.+.+. ................ ..........+.+.|.. . ++++|||||++.....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNW-NRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC------CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEecc-CCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 2333333333221 0000000000000000 00000112333444421 1 4999999999875320
Q ss_pred --cc-hHHHhhhccCCCCCeEEEEEecCCCc--------------C-Cc-ceEEccCCCHHHHHHHHhhhcC--CCCccc
Q 001919 569 --WD-DKLVMDLLPRFGGETHIIISTRLPRV--------------M-NL-EPLKLSYLSGVEAMSLMQGSVK--DYPITE 627 (996)
Q Consensus 569 --~~-~~~L~~~lp~~~~gsrIIITTR~~~~--------------~-~~-~~~~v~~L~~~EA~~Lf~~~a~--~~~~~~ 627 (996)
.+ ...|..++... ++.++|+|++.... . .. ..+++.+|+.+|+.+++..... ......
T Consensus 153 ~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~ 231 (357)
T 2fna_A 153 RGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD 231 (357)
T ss_dssp TTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc
Confidence 00 12333333322 36899999986421 1 11 5789999999999999987642 122222
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCcccccCCCCCcccccchhHHHHHH-HHHHhccccCC
Q 001919 628 VDALRVIEEKVGRLTMGLAVVGAILSELPINPSRLLDTINRMPLRDLSWNGRESHSLRRNTFLFQLFE-VCFSIFDHADG 706 (996)
Q Consensus 628 ~~~a~~iv~~lgglPLAL~~~gs~L~~~~~s~~e~l~~L~~~~~~~l~~~~~~~~~~~~~~~i~~~l~-iS~~~L~~~~~ 706 (996)
. ..|++.++|+|+++..++..+... .+..+++..+.+. ....+...+. +.++.. .
T Consensus 232 ~---~~i~~~t~G~P~~l~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~~----~ 287 (357)
T 2fna_A 232 Y---EVVYEKIGGIPGWLTYFGFIYLDN-KNLDFAINQTLEY----------------AKKLILKEFENFLHGRE----I 287 (357)
T ss_dssp H---HHHHHHHCSCHHHHHHHHHHHHHH-CCHHHHHHHHHHH----------------HHHHHHHHHHHHHTTCG----G
T ss_pred H---HHHHHHhCCCHHHHHHHHHHHccc-cchHHHHHHHHHH----------------HHHHHHHHHHHHhhccc----c
Confidence 2 689999999999999998876532 2344444332110 0011111111 111100 1
Q ss_pred CCHHHHHHHHhccccCCCCCCHHHHHHHhccCCCcccchhhHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCCceeeCC
Q 001919 707 PRSLATRMVLAGGWFAPAAIPVSLLALAAHKIPEKHKGTHLWRKLLLSLTCGFTSSYTKRSEAEASSMLLRFNIARSSTR 786 (996)
Q Consensus 707 ~~~~A~~lL~ilaff~~~~Ip~~ll~~~~~~l~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~sLI~~~~~ 786 (996)
..+..+.+|..++. ++ +...+...... .++. ..+...+...++.|.+.+||....
T Consensus 288 l~~~~~~~l~~la~-g~---~~~~l~~~~~~------------------~~g~--~~~~~~~~~~L~~L~~~gli~~~~- 342 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-CG---KWSDVKRALEL------------------EEGI--EISDSEIYNYLTQLTKHSWIIKEG- 342 (357)
T ss_dssp GHHHHHHHHHHHTT-CB---CHHHHHHHHHH------------------HHCS--CCCHHHHHHHHHHHHHTTSEEESS-
T ss_pred ccHHHHHHHHHHHc-CC---CHHHHHHHHHH------------------hcCC--CCCHHHHHHHHHHHHhCCCEEecC-
Confidence 13566788888887 33 44444321100 0110 012345778999999999998653
Q ss_pred CCeEEE-cHHHHHHHH
Q 001919 787 QGYIHF-NDLVKLYAR 801 (996)
Q Consensus 787 ~~~i~m-H~Lvq~~~r 801 (996)
+.|.+ |+++++++|
T Consensus 343 -~~y~f~~~~~~~~l~ 357 (357)
T 2fna_A 343 -EKYCPSEPLISLAFS 357 (357)
T ss_dssp -SCEEESSHHHHHHTC
T ss_pred -CEEEecCHHHHHhhC
Confidence 66775 899998753
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.38 E-value=5.3e-12 Score=145.32 Aligned_cols=202 Identities=13% Similarity=0.091 Sum_probs=127.7
Q ss_pred hhccccchHhhhhhhhc-CCCCccccccccccCceEEEE--EcCCCCChhHHHHHHHHHHhcC-----CC-EEEEEeCcC
Q 001919 432 IEMQSTEAPQRQKTKSS-GRYPRRKRSTKILYGKGIACV--TGDSGIGKTELLLEFAYRYHQR-----YK-MVLWVGGES 502 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~-~~~~~l~~~~~~~~~~~vV~I--~G~gGIGKTtLA~~~~~~~~~~-----F~-~v~wi~~~~ 502 (996)
..|+||+.+++++.+.. . ....+. ....+.+.| +|++|+|||+||+++++++... +. .++|+++..
T Consensus 22 ~~l~gR~~el~~l~~~l~~---~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLN---RLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHH---HHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCCChHHHHHHHHHHHhH---HHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 57999999999987411 0 000010 012235667 9999999999999999987652 22 468888755
Q ss_pred c-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccc--cchHHHhh--
Q 001919 503 R-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDW--WDDKLVMD-- 576 (996)
Q Consensus 503 ~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~--~~~~~L~~-- 576 (996)
. +....+..+...++....... .+..+....+.+.|. .+++++|||||++....- -+.+.+..
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~ 165 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRG-----------APALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLL 165 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTT-----------CCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCC-----------CCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHH
Confidence 4 666777777777765432111 123455666777773 477999999999875320 00133332
Q ss_pred -hccCC---C--CCeEEEEEecCCCcC------------Cc-ceEEccCCCHHHHHHHHhhhcC---CCCcccHHHHHHH
Q 001919 577 -LLPRF---G--GETHIIISTRLPRVM------------NL-EPLKLSYLSGVEAMSLMQGSVK---DYPITEVDALRVI 634 (996)
Q Consensus 577 -~lp~~---~--~gsrIIITTR~~~~~------------~~-~~~~v~~L~~~EA~~Lf~~~a~---~~~~~~~~~a~~i 634 (996)
++... + .+..||+||++..+. .. ..+++++|+.+|..++|...+. ....-..+.+..+
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 22211 2 356688888765421 11 2399999999999999976542 2122345678899
Q ss_pred HHHhC------CChHHHHHHH
Q 001919 635 EEKVG------RLTMGLAVVG 649 (996)
Q Consensus 635 v~~lg------glPLAL~~~g 649 (996)
++.++ |.|..+..+.
T Consensus 246 ~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 246 SDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HHHHCGGGTSCCCHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHH
Confidence 99999 9996554443
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=3.7e-10 Score=128.60 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=133.8
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC--------CCEEEEEeCcCc
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR--------YKMVLWVGGESR 503 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--------F~~v~wi~~~~~ 503 (996)
..|+||+.+++++.. .+..... ....+.|.|+|++|+|||+||+.+++.+... ...++|+++...
T Consensus 20 ~~l~gr~~~~~~l~~------~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 20 KEIPFREDILRDAAI------AIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp SSCTTCHHHHHHHHH------HHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCCChHHHHHHHHH------HHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 679999999998873 1100000 0123479999999999999999999986443 346778875432
Q ss_pred --cHHHHHHHHHHHc-cCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHH-Hhhhcc
Q 001919 504 --YIRQNYLNLWSFL-DVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKL-VMDLLP 579 (996)
Q Consensus 504 --~~~~~l~~La~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~-L~~~lp 579 (996)
+....+..+...+ +....... ....+....+.+.+ ...+.+||||+++....--..+. +..++.
T Consensus 93 ~~~~~~~~~~l~~~l~~~~~~~~~-----------~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 160 (384)
T 2qby_B 93 GGTPQAVLSSLAGKLTGFSVPKHG-----------INLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRRGGDIVLYQLLR 160 (384)
T ss_dssp CSCHHHHHHHHHHHHHCSCCCSSS-----------SCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHSTTSHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC-----------CCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCCCCceeHHHHhc
Confidence 3344455555554 33221111 12345567777788 55555999999987532100134 555554
Q ss_pred CCCCCeEEEEEecCCCc----C-----Cc-ceEEccCCCHHHHHHHHhhhcC---CCCcccHHHHHHHHHHhC---CChH
Q 001919 580 RFGGETHIIISTRLPRV----M-----NL-EPLKLSYLSGVEAMSLMQGSVK---DYPITEVDALRVIEEKVG---RLTM 643 (996)
Q Consensus 580 ~~~~gsrIIITTR~~~~----~-----~~-~~~~v~~L~~~EA~~Lf~~~a~---~~~~~~~~~a~~iv~~lg---glPL 643 (996)
.. .+..||+||+...+ . .. ..+++++++.++..++|...+. ....-..+..+.++++++ |.|.
T Consensus 161 ~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 161 SD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred CC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence 43 57899999988632 1 11 4899999999999999998753 112223456778888888 8776
Q ss_pred -HHHHHHHHH--hc--CCCCHHHHHHHHhc
Q 001919 644 -GLAVVGAIL--SE--LPINPSRLLDTINR 668 (996)
Q Consensus 644 -AL~~~gs~L--~~--~~~s~~e~l~~L~~ 668 (996)
++.++-... .. ..++.+.+.+.+.+
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 444433322 21 23566666555544
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=5.1e-10 Score=127.22 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=125.5
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC------CCEEEEEeCcCc-c
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR------YKMVLWVGGESR-Y 504 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~------F~~v~wi~~~~~-~ 504 (996)
..|+||+.++.++.. .+..... ....+.+.|+|++|+|||+||+.+++.+... -..++|+++... +
T Consensus 19 ~~~~gr~~~~~~l~~------~l~~~~~-~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 19 DVLPHREAELRRLAE------VLAPALR-GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp SCCTTCHHHHHHHHH------TTGGGTS-SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCHHHHHHHHHH------HHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 579999999999874 1111000 0122468999999999999999999977543 235678887766 6
Q ss_pred HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCccccc-chHHHhhhccCC-
Q 001919 505 IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWW-DDKLVMDLLPRF- 581 (996)
Q Consensus 505 ~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~~- 581 (996)
....+..+...++....... ....+....+.+.+. .+++.+||||+++...... ..+.+..++.+.
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTG-----------LSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ 160 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSC-----------CCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCCCC-----------CCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchh
Confidence 66777778887765432111 124455667777773 3568899999999763210 113344443221
Q ss_pred ----CCCeEEEEEecCCCcC---------Cc--ceEEccCCCHHHHHHHHhhhcC---CCCcccHHHHHHHHHHhC---C
Q 001919 582 ----GGETHIIISTRLPRVM---------NL--EPLKLSYLSGVEAMSLMQGSVK---DYPITEVDALRVIEEKVG---R 640 (996)
Q Consensus 582 ----~~gsrIIITTR~~~~~---------~~--~~~~v~~L~~~EA~~Lf~~~a~---~~~~~~~~~a~~iv~~lg---g 640 (996)
..+..+|+||+...+. .. ..+.+++++.++..++|...+. ....-..+..+.++++++ |
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 3466788888776331 12 4789999999999999998753 112223445778889998 9
Q ss_pred Ch
Q 001919 641 LT 642 (996)
Q Consensus 641 lP 642 (996)
.|
T Consensus 241 ~~ 242 (387)
T 2v1u_A 241 DA 242 (387)
T ss_dssp CH
T ss_pred CH
Confidence 99
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=7.4e-10 Score=125.68 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=122.6
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC---CEEEEEeCcCc-cHHH
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY---KMVLWVGGESR-YIRQ 507 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F---~~v~wi~~~~~-~~~~ 507 (996)
..|+||+.+++++.+ .+..... ......+.|+|++|+||||||+.++..+...+ ..++|+++... ....
T Consensus 20 ~~~~gr~~e~~~l~~------~l~~~~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 20 DELPHREDQIRKIAS------ILAPLYR-EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp SCCTTCHHHHHHHHH------SSGGGGG-TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCChHHHHHHHHH------HHHHHHc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHH
Confidence 579999999999874 1111000 01234699999999999999999999876653 36778876543 4445
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhc-CCCEEEEEcCCCCcccccchHHHhhh---ccC-CC
Q 001919 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMR-NIPFLVIIDNLESEKDWWDDKLVMDL---LPR-FG 582 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~~~~~~~~~L~~~---lp~-~~ 582 (996)
.+..+...++....... .+..+....+.+.+.. +++.+||||+++......+.+.+..+ +.. ..
T Consensus 93 ~~~~i~~~l~~~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 93 VLADLLESLDVKVPFTG-----------LSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK 161 (386)
T ss_dssp HHHHHTTTTSCCCCSSS-----------CCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCCCCCCC-----------CCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC
Confidence 55555555544322110 1244556667777733 45899999999875321011333333 211 12
Q ss_pred CCeEEEEEecCCCc----C-----Cc--ceEEccCCCHHHHHHHHhhhcC---CCCcccHHHHHHHHHHhC---CChHH
Q 001919 583 GETHIIISTRLPRV----M-----NL--EPLKLSYLSGVEAMSLMQGSVK---DYPITEVDALRVIEEKVG---RLTMG 644 (996)
Q Consensus 583 ~gsrIIITTR~~~~----~-----~~--~~~~v~~L~~~EA~~Lf~~~a~---~~~~~~~~~a~~iv~~lg---glPLA 644 (996)
.+..+|+||++..+ . .. ..+++++++.+|..++|...+. ....-..+....++++++ |.|..
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHH
Confidence 35677888886543 1 12 4799999999999999998653 112234566778888888 98873
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=7e-10 Score=116.69 Aligned_cols=200 Identities=11% Similarity=0.008 Sum_probs=116.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-..|+||+.+++.+.. .+..+. ..+.+.|+|++|+||||||+.+++.+...+... ...+... . ..
T Consensus 21 ~~~~~~g~~~~~~~l~~------~l~~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~-~~~~~~~-~--~~ 86 (250)
T 1njg_A 21 TFADVVGQEHVLTALAN------GLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVC-D--NC 86 (250)
T ss_dssp SGGGCCSCHHHHHHHHH------HHHHTC----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC-SSCCSCS-H--HH
T ss_pred cHHHHhCcHHHHHHHHH------HHHcCC----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCccc-H--HH
Confidence 34579999999998874 111110 123689999999999999999999876544211 1111111 0 11
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCe
Q 001919 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGET 585 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gs 585 (996)
..+.............. .....+....+.+.+. .+++.+|||||++....- ....|..++.....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~ 157 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAA--------SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHV 157 (250)
T ss_dssp HHHHTTCCSSEEEEETT--------CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTE
T ss_pred HHHhccCCcceEEecCc--------ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-HHHHHHHHHhcCCCce
Confidence 11111110000000000 0011112222333321 346799999999875210 1133444444444578
Q ss_pred EEEEEecCCCcC------CcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCChHHHHHHHHHH
Q 001919 586 HIIISTRLPRVM------NLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLTMGLAVVGAIL 652 (996)
Q Consensus 586 rIIITTR~~~~~------~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglPLAL~~~gs~L 652 (996)
.+|+||+..... ....+++++++.+|..+++...+... ..-..+....|+++++|.|..+..+...+
T Consensus 158 ~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 158 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899998765431 13689999999999999999877521 12345668899999999999888776544
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=153.01 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=86.1
Q ss_pred CCccceeEeeccCCCccccchH-HHHHHHHHH-----cCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcC
Q 001919 157 RLRSCDVFIGLHGCKPSLMRFA-NWLRAELEV-----QGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRN 230 (996)
Q Consensus 157 ~~~~~dVFlsfrG~d~~r~~F~-~hL~~~L~~-----~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S 230 (996)
..+.|||||||+++| ..|+ .+|...|+. .|+++|++++....|+.+.+.+.++|+.||..|+|+|+||+.|
T Consensus 667 ~~~~yd~fisy~~~d---~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKD---FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SCCCCSEEEECCSTT---HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred cceeccEEEEeeCCc---HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 467999999999999 3787 779999984 6999999999988888888888899999999999999999999
Q ss_pred cccHHHHHhhhc------CCceEeeeecCCCCc
Q 001919 231 PYSIEELRYFSG------KKNLVPIFFDLSPGD 257 (996)
Q Consensus 231 ~wCL~EL~~i~~------~~~v~PvFy~vdPs~ 257 (996)
.||..|+...+. +..||||||+-.|..
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~~ 776 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQY 776 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCSS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCChH
Confidence 999999987752 346999999877765
No 21
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=1.2e-08 Score=116.10 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=126.5
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCce--EEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc-cHHH
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKG--IACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR-YIRQ 507 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~--vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~-~~~~ 507 (996)
..|+||+.++.++.. .+..... ..... .+.|+|++|+|||||++.++..+.... ..++|+++... +...
T Consensus 17 ~~l~gr~~~~~~l~~------~l~~~~~-~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 17 KRLPHREQQLQQLDI------LLGNWLR-NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp SCCTTCHHHHHHHHH------HHHHHHH-STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCChHHHHHHHHH------HHHHHHc-CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 579999999998873 1111000 00112 699999999999999999999887653 46788887665 6666
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCcccccchHHHhhhccCCC----
Q 001919 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG---- 582 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~---- 582 (996)
.+..+...++....... ....+....+.+.+. .+++.+||||+++....- ....|..++....
T Consensus 90 ~~~~l~~~l~~~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRG-----------LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD-ILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHTTCCCCSSC-----------CCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHH-HHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHhCccCCCCC-----------CCHHHHHHHHHHHHhhcCCeEEEEEECccccchH-HHHHHHHHHHhCCCCCc
Confidence 77777777765422111 133455666666663 366899999999976210 0123333332211
Q ss_pred CCeEEEEEecCCCc----C-----Cc--ceEEccCCCHHHHHHHHhhhcCC---CCcccHHHHHHHHHHh---------C
Q 001919 583 GETHIIISTRLPRV----M-----NL--EPLKLSYLSGVEAMSLMQGSVKD---YPITEVDALRVIEEKV---------G 639 (996)
Q Consensus 583 ~gsrIIITTR~~~~----~-----~~--~~~~v~~L~~~EA~~Lf~~~a~~---~~~~~~~~a~~iv~~l---------g 639 (996)
.+..||+||++..+ . .. ..+.+++++.++..+++...+.. ...-..+....+++++ +
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 36788888887632 1 11 36999999999999999887641 1223456788899999 7
Q ss_pred CChHH
Q 001919 640 RLTMG 644 (996)
Q Consensus 640 glPLA 644 (996)
|.|--
T Consensus 238 G~~r~ 242 (389)
T 1fnn_A 238 GDARL 242 (389)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 87643
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.96 E-value=2.2e-08 Score=103.84 Aligned_cols=177 Identities=8% Similarity=0.011 Sum_probs=112.3
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-CC-EEEEEeCcCc-cHH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-YK-MVLWVGGESR-YIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~-~v~wi~~~~~-~~~ 506 (996)
.-..|+|++..++++.+ .+..+ ..+.+.|+|++|+|||+||+.+++.+... +. ..+.+++... ...
T Consensus 15 ~~~~~~g~~~~~~~l~~------~l~~~-----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKG------YVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp SGGGCCSCHHHHHHHHH------HHHTT-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred CHHHHcCcHHHHHHHHH------HHhCC-----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence 34578999999988874 11111 11238999999999999999999986443 22 2334443221 111
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-----cCCCEEEEEcCCCCcccccchHHHhhhccCC
Q 001919 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRF 581 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~ 581 (996)
.....+...+. ..++.+|||||++..... ....|..++...
T Consensus 84 ---------------------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-~~~~l~~~l~~~ 129 (226)
T 2chg_A 84 ---------------------------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-AQAALRRTMEMY 129 (226)
T ss_dssp ---------------------------------HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-HHHHHHHHHHHT
T ss_pred ---------------------------------HHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-HHHHHHHHHHhc
Confidence 11112222221 367899999999976321 113455555444
Q ss_pred CCCeEEEEEecCCCc------CCcceEEccCCCHHHHHHHHhhhcCCC-CcccHHHHHHHHHHhCCChHHHHHHHHH
Q 001919 582 GGETHIIISTRLPRV------MNLEPLKLSYLSGVEAMSLMQGSVKDY-PITEVDALRVIEEKVGRLTMGLAVVGAI 651 (996)
Q Consensus 582 ~~gsrIIITTR~~~~------~~~~~~~v~~L~~~EA~~Lf~~~a~~~-~~~~~~~a~~iv~~lgglPLAL~~~gs~ 651 (996)
..++++|+||+.... .....+++++++.+|..+++...+... ..-..+....|++.++|.|..+..+...
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457889999887542 123689999999999999999877421 1124556788999999999865544333
No 23
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.91 E-value=1.9e-09 Score=125.19 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCCchHH
Q 001919 872 FSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQFDMG 951 (996)
Q Consensus 872 ~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr~~eA 951 (996)
+++|.+|+.+++.++...+.. ++..|+.+|.+++|||.+|..+|+|++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~-------------------------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA 359 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSV-------------------------------FEDSNVYMLHMMYQAMGVCLYMQDWEGA 359 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTT-------------------------------BCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCc-------------------------------cChhchHHHHHHHHHHHHHHhhcCHHHH
Confidence 567788877777665544322 1224677999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 952 DDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 952 e~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+++++++|+++++++|++||+|+.+++|||.++..+|+.
T Consensus 360 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 360 LKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398 (433)
T ss_dssp HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence 999999999999999999999999999999999988875
No 24
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=4.7e-09 Score=123.67 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=76.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCCch
Q 001919 870 ITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQFD 949 (996)
Q Consensus 870 ~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr~~ 949 (996)
...|+|.+|+.+++.++...+.. ++..|+.++++++|||.+|..+|+|+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~-------------------------------lg~~Hp~~a~~~~nLa~~y~~~g~~~ 368 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPV-------------------------------FADTNLYVLRLLSIASEVLSYLQAYE 368 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTT-------------------------------BCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHh-------------------------------cCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 34677888888777665544322 22246779999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 950 MGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 950 eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+|+++++++|++++++||++||+|+.+++|||.++..+|+.
T Consensus 369 eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~ 409 (490)
T 3n71_A 369 EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI 409 (490)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999988875
No 25
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=1.8e-08 Score=118.83 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCC
Q 001919 868 TFITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQ 947 (996)
Q Consensus 868 ~~~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr 947 (996)
.+...|+|.+|+.+++.++...++. ++..|+.+|.+++|||.+|..+|+
T Consensus 360 ~y~~~g~~~eA~~~~~~aL~i~~~~-------------------------------lG~~Hp~~a~~l~nLa~~~~~~G~ 408 (490)
T 3n71_A 360 VLSYLQAYEEASHYARRMVDGYMKL-------------------------------YHHNNAQLGMAVMRAGLTNWHAGH 408 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH-------------------------------SCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHH-------------------------------cCCCCHHHHHHHHHHHHHHHHCCC
Confidence 3445678888888777766555432 223467899999999999999999
Q ss_pred chHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 948 FDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 948 ~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
|++|+.+|++||+|+++++|++||+|+..+++|+.++.-+
T Consensus 409 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 409 IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988543
No 26
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.72 E-value=2.3e-08 Score=115.96 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=70.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCC
Q 001919 868 TFITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQ 947 (996)
Q Consensus 868 ~~~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr 947 (996)
.+...|+|.+|+.+++.++...++. ++..|+.+|.+|+|||.+|..+|+
T Consensus 349 ~y~~~g~~~eA~~~~~~aL~i~~~~-------------------------------lG~~Hp~~a~~l~nLa~~~~~qg~ 397 (433)
T 3qww_A 349 VCLYMQDWEGALKYGQKIIKPYSKH-------------------------------YPVYSLNVASMWLKLGRLYMGLEN 397 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH-------------------------------SCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHH-------------------------------cCCCChHHHHHHHHHHHHHHhccC
Confidence 3445688888888887776665543 222467799999999999999999
Q ss_pred chHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 001919 948 FDMGDDLIRKAVFIRTSISGEDHPDTIAARETLS 981 (996)
Q Consensus 948 ~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA 981 (996)
|+||+.+|++|++|+++++|+|||.|...++||.
T Consensus 398 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999886
No 27
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=1.8e-07 Score=103.41 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=115.8
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCc-cHH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESR-YIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~-~~~ 506 (996)
.-..|+|++..++++.+ .+..+ ..+.+.|+|++|+|||++|+.+++.+.... ..++++++... ..
T Consensus 19 ~~~~~~g~~~~~~~l~~------~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~- 86 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQ------IAKDG-----NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI- 86 (323)
T ss_dssp SGGGCCSCTHHHHHHHH------HHHSC-----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH-
T ss_pred CHHHHHCCHHHHHHHHH------HHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh-
Confidence 34579999999998874 11111 112389999999999999999999864322 12444543321 11
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH------hcCCCEEEEEcCCCCcccccchHHHhhhccC
Q 001919 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL------MRNIPFLVIIDNLESEKDWWDDKLVMDLLPR 580 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L------~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~ 580 (996)
. .....+.... ..+++.+|||||++....- ....|..++..
T Consensus 87 ~--------------------------------~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-~~~~L~~~le~ 133 (323)
T 1sxj_B 87 D--------------------------------VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-AQQALRRTMEL 133 (323)
T ss_dssp H--------------------------------HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-HHHTTHHHHHH
T ss_pred H--------------------------------HHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-HHHHHHHHHhc
Confidence 0 1111111111 0235889999999975321 11334444444
Q ss_pred CCCCeEEEEEecCCCc------CCcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-HHHHHHHHH
Q 001919 581 FGGETHIIISTRLPRV------MNLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-GLAVVGAIL 652 (996)
Q Consensus 581 ~~~gsrIIITTR~~~~------~~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-AL~~~gs~L 652 (996)
...++.+|+||.+..- .....+++++++.++..+++...+.... .-..+.+..|++.++|.|. ++..+....
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457888888876432 1236899999999999999998764111 2235667899999999994 555554433
Q ss_pred hc-CCCCHHHHHHHH
Q 001919 653 SE-LPINPSRLLDTI 666 (996)
Q Consensus 653 ~~-~~~s~~e~l~~L 666 (996)
.. ..++.+...+.+
T Consensus 214 ~~~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 214 AGHGLVNADNVFKIV 228 (323)
T ss_dssp HHHSSBCHHHHHHHH
T ss_pred hcCCCcCHHHHHHHH
Confidence 22 234454444443
No 28
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.71 E-value=3.6e-08 Score=114.38 Aligned_cols=89 Identities=17% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcccccccccccccCchhHHHhhHhHHHHHHHHHHHHHhcCC
Q 001919 868 TFITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSLCWRPVQTNAQLNPSLWQELALTRATVLETRAKLMLRGGQ 947 (996)
Q Consensus 868 ~~~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l~~~~g~~~e~~~~~l~~~l~~~~A~~l~~La~~y~~~Gr 947 (996)
.+...|+|.+|+.+++.+....+.. ++..|+.+|..++|||.+|..+|+
T Consensus 338 ~y~~~g~~~eA~~~~~~~L~i~~~~-------------------------------lg~~Hp~~a~~l~nLa~~~~~~g~ 386 (429)
T 3qwp_A 338 ACINLGLLEEALFYGTRTMEPYRIF-------------------------------FPGSHPVRGVQVMKVGKLQLHQGM 386 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH-------------------------------SCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccHHHHHHHHHHHHHhHHHH-------------------------------cCCCChHHHHHHHHHHHHHHhcCC
Confidence 3445678888888877766655443 222467799999999999999999
Q ss_pred chHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 948 FDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 948 ~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
|++|+.+|++|++|+++++|+|||.|+..++||+.+..-.
T Consensus 387 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 387 FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987644
No 29
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.61 E-value=5.3e-08 Score=112.97 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=61.1
Q ss_pred hhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 927 LALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 927 l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.|+.++.++++||.+|..+|+|++|+++++++|+++++++|++||+|+.+++|||.++...|+.
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~ 387 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF 387 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH
Confidence 4677999999999999999999999999999999999999999999999999999999988864
No 30
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.54 E-value=6.2e-07 Score=101.43 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=109.0
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHH
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLN 511 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~ 511 (996)
..++|++.+++.+.. .+..+. ....+.|+|++|+||||+|+.+++.+...... ....+... .....
T Consensus 16 ~~~vg~~~~~~~L~~------~l~~~~----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~---~~~~~ 81 (373)
T 1jr3_A 16 ADVVGQEHVLTALAN------GLSLGR----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVC---DNCRE 81 (373)
T ss_dssp TTSCSCHHHHHHHHH------HHHHTC----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-CSSCCSSS---HHHHH
T ss_pred hhccCcHHHHHHHHH------HHHhCC----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCCccc---HHHHH
Confidence 468999999988874 111110 12358999999999999999999987543210 00111111 11111
Q ss_pred HHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEE
Q 001919 512 LWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHI 587 (996)
Q Consensus 512 La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrI 587 (996)
+...-............... +. +..+.+.+. .+++.+||+|+++....- ....|..++.....+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~----~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~ 152 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKV----ED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKF 152 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCS----SC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEE
T ss_pred HhccCCCceEEecccccCCH----HH----HHHHHHHHhhccccCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEE
Confidence 11100000000000000000 11 222333331 356789999999875321 113444555444446778
Q ss_pred EEEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHHH
Q 001919 588 IISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVVG 649 (996)
Q Consensus 588 IITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~g 649 (996)
|++|.+.. + .....+++++++.++..+++...+.... .-..+.+..|++.++|.|..+..+.
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 87776543 2 1236899999999999999987764111 2245567889999999998765543
No 31
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.2e-06 Score=96.91 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=108.5
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQN 508 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~ 508 (996)
-..++|++..++.+.. .+..+ ..+.+.|+|++|+|||++|+.+++.+.... ...+.+++.... +
T Consensus 24 ~~~~~g~~~~~~~l~~------~l~~~-----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~---~ 89 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKH------YVKTG-----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---G 89 (327)
T ss_dssp TTTCCSCHHHHHHHHH------HHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---H
T ss_pred HHHhhCCHHHHHHHHH------HHHcC-----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC---c
Confidence 3468999998888873 11111 112389999999999999999999864332 123344332110 0
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-----hcCCCEEEEEcCCCCcccccchHHHhhhccCCCC
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-----MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGG 583 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~ 583 (996)
.. .....+.+.. ...++.+||+|+++....- ....|..++.....
T Consensus 90 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~ 139 (327)
T 1iqp_A 90 IN-----------------------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQD-AQQALRRTMEMFSS 139 (327)
T ss_dssp HH-----------------------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-HHHHHHHHHHHTTT
T ss_pred hH-----------------------------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCC
Confidence 00 0001111111 1266889999999976311 11345555544445
Q ss_pred CeEEEEEecCCCc-C-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHHH
Q 001919 584 ETHIIISTRLPRV-M-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVVG 649 (996)
Q Consensus 584 gsrIIITTR~~~~-~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~g 649 (996)
++++|+||....- . ....+++++++.++..+++...+.... .-..+....|++.++|.|..+..+.
T Consensus 140 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 7889988876542 1 236899999999999999988765322 2345668889999999998654433
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=2.3e-06 Score=86.17 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=85.5
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-------CCEEEEEeCcCc
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-------YKMVLWVGGESR 503 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-------F~~v~wi~~~~~ 503 (996)
-..|+||+.+++++.+. +... ..+.+.|+|++|+|||+||+.+++.+... ...++++++
T Consensus 21 ~~~~~g~~~~~~~l~~~------l~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 86 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQV------LQRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM--- 86 (195)
T ss_dssp SCCCCSCHHHHHHHHHH------HTSS-----SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH---
T ss_pred ccccccchHHHHHHHHH------HhcC-----CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH---
Confidence 34689999999988741 1111 12358899999999999999999987542 234556632
Q ss_pred cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-hcCCCEEEEEcCCCCccc-------ccchHHHh
Q 001919 504 YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-MRNIPFLVIIDNLESEKD-------WWDDKLVM 575 (996)
Q Consensus 504 ~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~~~-------~~~~~~L~ 575 (996)
...+ . +... .......+..+.+.+ ...++.+|||||++.... ..-...+.
T Consensus 87 --~~~~----~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~ 144 (195)
T 1jbk_A 87 --GALV----A--GAKY--------------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144 (195)
T ss_dssp --HHHH----T--TTCS--------------HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHH
T ss_pred --HHHh----c--cCCc--------------cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHH
Confidence 1110 0 0000 001122233333333 246788999999987621 00013344
Q ss_pred hhccCCCCCeEEEEEecCCC------cC-----CcceEEccCCCHHHHHHHH
Q 001919 576 DLLPRFGGETHIIISTRLPR------VM-----NLEPLKLSYLSGVEAMSLM 616 (996)
Q Consensus 576 ~~lp~~~~gsrIIITTR~~~------~~-----~~~~~~v~~L~~~EA~~Lf 616 (996)
.++.. .+..+|+||.... +. ....+.+++++.+|..++|
T Consensus 145 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 145 PALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred Hhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 44432 2466777766543 11 1246889999998887765
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.33 E-value=3.6e-06 Score=93.26 Aligned_cols=176 Identities=13% Similarity=0.007 Sum_probs=104.7
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYL 510 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~ 510 (996)
-..|+|++..++++.. .+............|.|+|++|+|||+||+.+++..... ..++++....
T Consensus 11 ~~~~ig~~~~~~~l~~------~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~------ 75 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRV------YLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGPAIE------ 75 (324)
T ss_dssp TTTCCSCHHHHHHHHH------HHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEECTTTCC------
T ss_pred HHHhhCHHHHHHHHHH------HHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeccccC------
Confidence 3568999988887763 010000000012358999999999999999999877433 3455432210
Q ss_pred HHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh--cCCCEEEEEcCCCCcccccchHHHhhhccCC-------
Q 001919 511 NLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM--RNIPFLVIIDNLESEKDWWDDKLVMDLLPRF------- 581 (996)
Q Consensus 511 ~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~------- 581 (996)
...+ +...+. ..++.+|+||+++..... ....|..++...
T Consensus 76 --------------------------~~~~----l~~~l~~~~~~~~~l~lDEi~~l~~~-~~~~L~~~l~~~~~~~v~~ 124 (324)
T 1hqc_A 76 --------------------------KPGD----LAAILANSLEEGDILFIDEIHRLSRQ-AEEHLYPAMEDFVMDIVIG 124 (324)
T ss_dssp --------------------------SHHH----HHHHHTTTCCTTCEEEETTTTSCCHH-HHHHHHHHHHHSEEEECCS
T ss_pred --------------------------ChHH----HHHHHHHhccCCCEEEEECCcccccc-hHHHHHHHHHhhhhHHhcc
Confidence 0011 112221 245678899999876321 002222222111
Q ss_pred -----------CCCeEEEEEecCCCc------CCc-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001919 582 -----------GGETHIIISTRLPRV------MNL-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 582 -----------~~gsrIIITTR~~~~------~~~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
.++.++|.||..... ... .++++++++.+|..+++...+.... .-..+....|+++++|.|
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 204 (324)
T 1hqc_A 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM 204 (324)
T ss_dssp SSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH
T ss_pred ccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Confidence 023567777665432 123 5899999999999999988775322 234566889999999999
Q ss_pred HHHHHHHHHH
Q 001919 643 MGLAVVGAIL 652 (996)
Q Consensus 643 LAL~~~gs~L 652 (996)
-.+..+...+
T Consensus 205 r~l~~~l~~~ 214 (324)
T 1hqc_A 205 RVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776665554
No 34
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.9e-06 Score=92.07 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=103.4
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC------C-EEEEEeCcCc-c
Q 001919 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY------K-MVLWVGGESR-Y 504 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~-~v~wi~~~~~-~ 504 (996)
.+.||+.|+.++.. .+...-.. ...+.+.|+|++|+|||++++.++.++.... . .+++|++..- +
T Consensus 21 ~L~~Re~E~~~i~~------~L~~~i~~-~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 21 LLKSQVEDFTRIFL------PIYDSLMS-SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHT-TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred ccCCHHHHHHHHHH------HHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 48899999999873 11111000 1224689999999999999999999876421 1 4678888776 6
Q ss_pred HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH--hcCCCEEEEEcCCCCcccccchHHHhhhccC--
Q 001919 505 IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL--MRNIPFLVIIDNLESEKDWWDDKLVMDLLPR-- 580 (996)
Q Consensus 505 ~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~-- 580 (996)
....+..|..+|.-..... ....+.+..+.+.+ ...++++||||.+|...+ .+.|..++.+
T Consensus 94 ~~~~~~~I~~~L~g~~~~~------------~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~ 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCG------------DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWIS 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--C------------CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCc------------hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhccc
Confidence 7778888888774221000 01112233333332 246779999999998752 3666666532
Q ss_pred CC-CCeEEEEEecCCCcC----------Cc--ceEEccCCCHHHHHHHHhhhcC
Q 001919 581 FG-GETHIIISTRLPRVM----------NL--EPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 581 ~~-~gsrIIITTR~~~~~----------~~--~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
.. ....||.++.+..+. .. ..+.+++++.+|-.+++..++.
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 21 123444455544331 11 5689999999999999998874
No 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.25 E-value=7.8e-06 Score=89.98 Aligned_cols=176 Identities=9% Similarity=0.047 Sum_probs=106.4
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-CC-EEEEEeCcCccHHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-YK-MVLWVGGESRYIRQN 508 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~-~v~wi~~~~~~~~~~ 508 (996)
-.+++|++..++.+.+ .+..+ ..+.+.|+|++|+|||++|+.+++.+... +. .++.+++....
T Consensus 16 ~~~~~g~~~~~~~l~~------~l~~~-----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---- 80 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKG------YVERK-----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER---- 80 (319)
T ss_dssp GGGSCSCHHHHHHHHT------TTTTT-----CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT----
T ss_pred HHHHhCCHHHHHHHHH------HHhCC-----CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc----
Confidence 4568999999988874 11111 11238999999999999999999986432 21 22333322110
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHH--HhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeE
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKE--LMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETH 586 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsr 586 (996)
+ .. ...+.+..+... +...++.+||+|+++....- ....|..++.....+++
T Consensus 81 --------~----~~-------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~ 134 (319)
T 2chq_A 81 --------G----ID-------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-AQAALRRTMEMYSKSCR 134 (319)
T ss_dssp --------C----TT-------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-HHHTTGGGTSSSSSSEE
T ss_pred --------C----hH-------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCe
Confidence 0 00 000111111111 11256789999999876321 11334555544445788
Q ss_pred EEEEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHH
Q 001919 587 IIISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAV 647 (996)
Q Consensus 587 IIITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~ 647 (996)
+|+||.... + .....+++++++.++..+++...+.... .-..+.+..|++.++|.+..+..
T Consensus 135 ~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 888886644 2 1236899999999999999988765322 23456678889999998875443
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.21 E-value=3.7e-06 Score=88.35 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+.+.|+|++|+|||+||+.+++........+.|+++... ...+ ..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~---------~~~~---~~----------------------- 97 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH---------ASIS---TA----------------------- 97 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG---------GGSC---GG-----------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH---------HHHH---HH-----------------------
Confidence 468999999999999999999987766556777764321 0000 00
Q ss_pred HHHHHhcCCCEEEEEcCCCCccccc-chHHHhhhccCC-CCC-eEEEEEecCCC--c--C------Cc---ceEEccCCC
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDWW-DDKLVMDLLPRF-GGE-THIIISTRLPR--V--M------NL---EPLKLSYLS 608 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~-~~~~L~~~lp~~-~~g-srIIITTR~~~--~--~------~~---~~~~v~~L~ 608 (996)
+.+. -.++.+|||||++....-. ....+..++... ..+ .+||+||+... + . .. ..+++++++
T Consensus 98 ~~~~--~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 98 LLEG--LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMM 175 (242)
T ss_dssp GGTT--GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred HHHh--ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence 0001 1345689999998753210 013344443211 112 35888877532 1 1 11 579999999
Q ss_pred HHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHHH
Q 001919 609 GVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAVV 648 (996)
Q Consensus 609 ~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~~ 648 (996)
.++..+++...+.... .-..+....|++.++|.+-.+..+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHH
Confidence 9999999998764211 234566788999999988766543
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=1.3e-05 Score=87.18 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=101.6
Q ss_pred hhccccchHhhhhhhhcC---CCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHH
Q 001919 432 IEMQSTEAPQRQKTKSSG---RYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQN 508 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~---~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~ 508 (996)
..++|.+...+++.+... .+..+..... .....-+.|+|++|+|||+||+.+++.+... .+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~G~~GtGKT~la~~la~~~~~~---~~~v~~~~------ 86 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPPKGILLYGPPGTGKTLLAKAVATETNAT---FIRVVGSE------ 86 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCCSEEEEESSSSSSHHHHHHHHHHHTTCE---EEEEEGGG------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehHH------
Confidence 467888888888763100 0000000000 0122358999999999999999999886433 23332210
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcc----------cccchHHHhhhc
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEK----------DWWDDKLVMDLL 578 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~----------~~~~~~~L~~~l 578 (996)
..... ..........+........+.+|+||+++... .......+..++
T Consensus 87 ------~~~~~---------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 145 (285)
T 3h4m_A 87 ------LVKKF---------------IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL 145 (285)
T ss_dssp ------GCCCS---------------TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred ------HHHhc---------------cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence 00000 01122333334444435678899999998641 000012233332
Q ss_pred c-----CCCCCeEEEEEecCCCcC--------Cc-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC-hH
Q 001919 579 P-----RFGGETHIIISTRLPRVM--------NL-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL-TM 643 (996)
Q Consensus 579 p-----~~~~gsrIIITTR~~~~~--------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl-PL 643 (996)
. ....+..||.||...... .. ..+.++.++.++-.++|...+.............++..+.|. |-
T Consensus 146 ~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 146 AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHH
T ss_pred HHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHH
Confidence 1 112357777788765431 22 579999999999999999888643322222245777777774 53
Q ss_pred HHHH
Q 001919 644 GLAV 647 (996)
Q Consensus 644 AL~~ 647 (996)
.|..
T Consensus 226 ~i~~ 229 (285)
T 3h4m_A 226 ELKA 229 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 38
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.08 E-value=4.9e-05 Score=84.97 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..+.++|++|+|||++|+.++..+....... +..+... . ....+...-..........+... ....+.+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c-~--~c~~~~~~~~~d~~~~~~~~~~~-----~~~i~~ir~ 95 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHC-R--GCQLMQAGTHPDYYTLAPEKGKN-----TLGVDAVRE 95 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCS-H--HHHHHHHTCCTTEEEECCCTTCS-----SBCHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCC-H--HHHHHhcCCCCCEEEEeccccCC-----CCCHHHHHH
Confidence 3589999999999999999999875432100 0111111 0 11111110000000000000000 011122334
Q ss_pred HHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-c-----CCcceEEccCCCHHHHHH
Q 001919 545 VRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-V-----MNLEPLKLSYLSGVEAMS 614 (996)
Q Consensus 545 l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~-----~~~~~~~v~~L~~~EA~~ 614 (996)
+.+.+. .+++-++|+|+++....- ....|.+++.....++.+|++|.+.. + .....+++++++.++..+
T Consensus 96 l~~~~~~~~~~~~~kvviIdead~l~~~-a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~ 174 (334)
T 1a5t_A 96 VTEKLNEHARLGGAKVVWVTDAALLTDA-AANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVT 174 (334)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhccccCCcEEEEECchhhcCHH-HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHH
Confidence 444442 245789999999986321 12345555644445678777777653 3 224789999999999999
Q ss_pred HHhhhcCCCCcccHHHHHHHHHHhCCChHHH
Q 001919 615 LMQGSVKDYPITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 615 Lf~~~a~~~~~~~~~~a~~iv~~lgglPLAL 645 (996)
++..... -+.+.+..+++.++|.|..+
T Consensus 175 ~L~~~~~----~~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 175 WLSREVT----MSQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp HHHHHCC----CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhcC----CCHHHHHHHHHHcCCCHHHH
Confidence 9988761 23455678999999988643
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.7e-05 Score=87.38 Aligned_cols=198 Identities=10% Similarity=-0.023 Sum_probs=100.7
Q ss_pred chhccccchHhhhhhhhcCCCCcc-ccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRR-KRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQN 508 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l-~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~ 508 (996)
-..++|.+...+.+.. .+ ..+ .... +.|+|++|+||||+|+.++..+.....+.++++.... .....
T Consensus 13 ~~~~vg~~~~~~~l~~------~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 13 LNALSHNEELTNFLKS------LSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGGCCSCHHHHHHHHT------TTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHHhcCCHHHHHHHHH------HHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 4568899888888873 11 111 1123 8999999999999999999976443333333321110 00000
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-------------cCCCEEEEEcCCCCcccccchHHHh
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-------------RNIPFLVIIDNLESEKDWWDDKLVM 575 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-------------~~~r~LLVLDdvd~~~~~~~~~~L~ 575 (996)
...++........ ..........+.......+..... ..++-+||||+++....- ....|.
T Consensus 82 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~-~~~~L~ 155 (354)
T 1sxj_E 82 ----KLELNVVSSPYHL-EITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-AQAALR 155 (354)
T ss_dssp --------CCEECSSEE-EECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-HHHHHH
T ss_pred ----cceeeeecccceE-EecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH-HHHHHH
Confidence 0001100000000 000000000000011111211110 235669999999985321 123455
Q ss_pred hhccCCCCCeEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-ccc-HHHHHHHHHHhCCChHHH
Q 001919 576 DLLPRFGGETHIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITE-VDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 576 ~~lp~~~~gsrIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~-~~~a~~iv~~lgglPLAL 645 (996)
.++.....++.+|++|.+.. +. ....+++++++.++..+++...+.... .-. .+.+..|++.++|.+-.+
T Consensus 156 ~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 156 RTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp HHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHH
Confidence 55543334678888887654 31 236899999999999999988764211 112 456778888888877543
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.02 E-value=3.5e-05 Score=89.59 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.+.|+|++|+||||||+.+++.+...+ ..++++++. .....+...+... ...
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-----~~~~~~~~~~~~~---------------------~~~ 185 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-----KFLNDLVDSMKEG---------------------KLN 185 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-----HHHHHHHHHHHTT---------------------CHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-----HHHHHHHHHHHcc---------------------cHH
Confidence 489999999999999999999876554 245677532 2222222222100 012
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccc-cchHHHhhhccC-CCCCeEEEEEecCCC-----cC-----Cc---ceEEccCCC
Q 001919 544 RVRKELMRNIPFLVIIDNLESEKDW-WDDKLVMDLLPR-FGGETHIIISTRLPR-----VM-----NL---EPLKLSYLS 608 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~-~~~~~L~~~lp~-~~~gsrIIITTR~~~-----~~-----~~---~~~~v~~L~ 608 (996)
.+...+ ..++-+||||+++....- ...+.+...+.. ...|..|||||.+.. +. .. .++.+++++
T Consensus 186 ~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 186 EFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp HHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred HHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 233444 336779999999875320 011233333321 124678999988742 11 11 478999999
Q ss_pred HHHHHHHHhhhcC--CCCcccHHHHHHHHHHhCCChHHHHHH----HHH--HhcCCCCHHHHHHHHhc
Q 001919 609 GVEAMSLMQGSVK--DYPITEVDALRVIEEKVGRLTMGLAVV----GAI--LSELPINPSRLLDTINR 668 (996)
Q Consensus 609 ~~EA~~Lf~~~a~--~~~~~~~~~a~~iv~~lgglPLAL~~~----gs~--L~~~~~s~~e~l~~L~~ 668 (996)
.++-.+++...+. ... -..+.+..|++.++|.+--+.-+ ..+ +.+..++.+...+.++.
T Consensus 265 ~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 265 EETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999988774 111 12344678889999988544332 222 23344666666666654
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=5.1e-05 Score=90.02 Aligned_cols=196 Identities=9% Similarity=0.060 Sum_probs=108.0
Q ss_pred ccchhccccchHhhhhhhhcCC--------CCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 429 EKEIEMQSTEAPQRQKTKSSGR--------YPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~--------~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..-..++|++..++++..-... +... +.......+.+.|+|++|+|||+||+.+++.+. + .++.+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~--g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHA--GKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCC--CTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhcccc--CccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C-CEEEEeC
Confidence 3446799999998887741111 1110 000001224799999999999999999998872 3 3456665
Q ss_pred cCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-hcCCCEEEEEcCCCCcccccch---HHHh
Q 001919 501 ESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-MRNIPFLVIIDNLESEKDWWDD---KLVM 575 (996)
Q Consensus 501 ~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~~~~~~~---~~L~ 575 (996)
... ... .+ ...+........ +..+.... .+.+ ...++.+||||+++....- +. ..|.
T Consensus 111 s~~~~~~-~~---~~~i~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~vliIDEid~l~~~-~~~~l~~L~ 172 (516)
T 1sxj_A 111 SDVRSKT-LL---NAGVKNALDNMS------VVGYFKHN-------EEAQNLNGKHFVIIMDEVDGMSGG-DRGGVGQLA 172 (516)
T ss_dssp TSCCCHH-HH---HHTGGGGTTBCC------STTTTTC-----------CCSSTTSEEEEECSGGGCCTT-STTHHHHHH
T ss_pred CCcchHH-HH---HHHHHHHhcccc------HHHHHhhh-------hhhhhccCCCeEEEEECCCccchh-hHHHHHHHH
Confidence 543 221 11 111111000000 00000000 0011 2467889999999876321 11 3455
Q ss_pred hhccCCCCCeEEEEEecCCC---cC---C-cceEEccCCCHHHHHHHHhhhcC--CCCcccHHHHHHHHHHhCC-ChHHH
Q 001919 576 DLLPRFGGETHIIISTRLPR---VM---N-LEPLKLSYLSGVEAMSLMQGSVK--DYPITEVDALRVIEEKVGR-LTMGL 645 (996)
Q Consensus 576 ~~lp~~~~gsrIIITTR~~~---~~---~-~~~~~v~~L~~~EA~~Lf~~~a~--~~~~~~~~~a~~iv~~lgg-lPLAL 645 (996)
.++... +..||+++.+.. +. . ...+++++++.++..+++...+. ... -..+.+..|++.++| ++-++
T Consensus 173 ~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i 249 (516)
T 1sxj_A 173 QFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVI 249 (516)
T ss_dssp HHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHH
T ss_pred HHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHH
Confidence 555432 345666665533 21 1 26799999999999999987764 111 223457789999988 55566
Q ss_pred HHHHH
Q 001919 646 AVVGA 650 (996)
Q Consensus 646 ~~~gs 650 (996)
..+..
T Consensus 250 ~~L~~ 254 (516)
T 1sxj_A 250 NLLST 254 (516)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 66543
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.99 E-value=0.00015 Score=80.50 Aligned_cols=186 Identities=13% Similarity=0.156 Sum_probs=104.7
Q ss_pred hhccccchHhhhhhhhc---CCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHH
Q 001919 432 IEMQSTEAPQRQKTKSS---GRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQN 508 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~---~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~ 508 (996)
..++|.+...+++.+.. -.+..+.... ....+-|.|+|++|+|||+||+.+++..... .+.+++ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~v~~-----~-- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANST---FFSVSS-----S-- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCE---EEEEEH-----H--
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCC---EEEEch-----H--
Confidence 45788888777776311 0011111110 1122358999999999999999999986433 233421 1
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc-------c---hHHHhhhc
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW-------D---DKLVMDLL 578 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~-------~---~~~L~~~l 578 (996)
.+ ..... ......+..+.+.....++.+|+||+++.+..-- . ...+...+
T Consensus 86 --~l---~~~~~---------------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 145 (322)
T 3eie_A 86 --DL---VSKWM---------------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM 145 (322)
T ss_dssp --HH---HTTTG---------------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHH
T ss_pred --HH---hhccc---------------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHh
Confidence 11 11000 1223334445444446778999999999752100 0 01222222
Q ss_pred c---CCCCCeEEEEEecCCCcCC------c-ceEEccCCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCC-hHHHH
Q 001919 579 P---RFGGETHIIISTRLPRVMN------L-EPLKLSYLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRL-TMGLA 646 (996)
Q Consensus 579 p---~~~~gsrIIITTR~~~~~~------~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lggl-PLAL~ 646 (996)
. ....+..||.||....... . ..+.++.++.++-.++|..++...+.. ..+....|++.+.|. +-.|.
T Consensus 146 ~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 146 NGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp GGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH
T ss_pred ccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 1 1223566666776543321 2 578899999999999999988754422 344577888888774 44454
Q ss_pred HHH
Q 001919 647 VVG 649 (996)
Q Consensus 647 ~~g 649 (996)
.+.
T Consensus 226 ~l~ 228 (322)
T 3eie_A 226 VVV 228 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.97 E-value=2.7e-05 Score=90.55 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=85.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|||++|+||||||+.+++.....| .-+++...... +..+.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f---~~l~a~~~~~~------------------------------~ir~~~~~a 98 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADV---ERISAVTSGVK------------------------------EIREAIERA 98 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEE---EEEETTTCCHH------------------------------HHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe---EEEEeccCCHH------------------------------HHHHHHHHH
Confidence 589999999999999999998865443 22322211110 111222222
Q ss_pred HHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCC-CCeEEEE-EecCCC--c-----CCcceEEccCCCHHHHHHHH
Q 001919 546 RKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG-GETHIII-STRLPR--V-----MNLEPLKLSYLSGVEAMSLM 616 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~-~gsrIII-TTR~~~--~-----~~~~~~~v~~L~~~EA~~Lf 616 (996)
.......++.+|+||+++.... .+...+++... ....+|. ||.+.. + ....++.+++++.++-.+++
T Consensus 99 ~~~~~~~~~~iLfIDEI~~l~~----~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il 174 (447)
T 3pvs_A 99 RQNRNAGRRTILFVDEVHRFNK----SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVL 174 (447)
T ss_dssp HHHHHTTCCEEEEEETTTCC----------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred HHhhhcCCCcEEEEeChhhhCH----HHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHH
Confidence 2222256789999999998632 23333333211 1234444 444543 2 12368999999999999999
Q ss_pred hhhcCC-------CC-cccHHHHHHHHHHhCCChHHHH
Q 001919 617 QGSVKD-------YP-ITEVDALRVIEEKVGRLTMGLA 646 (996)
Q Consensus 617 ~~~a~~-------~~-~~~~~~a~~iv~~lgglPLAL~ 646 (996)
...+.. .. .-..+....|+++++|.+-.+.
T Consensus 175 ~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 175 TQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 887642 11 1245678889999998875443
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.95 E-value=0.00013 Score=77.97 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+-|.|+|++|+|||+||+.+++.+... .+.+++..- .... . .........
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~------------~~~~-~--------------~~~~~~~~~ 89 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEF------------VEVI-G--------------GLGAARVRS 89 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTT------------SSSS-T--------------THHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHH------------Hhhc-c--------------ChhHHHHHH
Confidence 358899999999999999999987543 234443211 0000 0 011122222
Q ss_pred HHHHHhcCCCEEEEEcCCCCccc-----------ccchHHHhhhcc---C--CCCCeEEEEEecCCCc-----C---Cc-
Q 001919 545 VRKELMRNIPFLVIIDNLESEKD-----------WWDDKLVMDLLP---R--FGGETHIIISTRLPRV-----M---NL- 599 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~-----------~~~~~~L~~~lp---~--~~~gsrIIITTR~~~~-----~---~~- 599 (996)
+.+......+.+|+||+++.... ......+..++. . ...+..||.||..... . ..
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLD 169 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCC
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCC
Confidence 33333246689999999997510 000122333331 1 1224566666655332 1 23
Q ss_pred ceEEccCCCHHHHHHHHhhhcCCCC--cccHHHHHHHHHHhCCChH-HHHHH
Q 001919 600 EPLKLSYLSGVEAMSLMQGSVKDYP--ITEVDALRVIEEKVGRLTM-GLAVV 648 (996)
Q Consensus 600 ~~~~v~~L~~~EA~~Lf~~~a~~~~--~~~~~~a~~iv~~lgglPL-AL~~~ 648 (996)
..+.++.++.++-.++|..++...+ .........+++.+.|.+- .|..+
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5788999999999999988775222 1222234677777777654 34433
No 45
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=6.6e-05 Score=83.90 Aligned_cols=185 Identities=11% Similarity=0.056 Sum_probs=104.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC--C-CEEEEEeCcCc-cH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR--Y-KMVLWVGGESR-YI 505 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~--F-~~v~wi~~~~~-~~ 505 (996)
.-..++|++..++.+.. .+..+. .+.+.|+|++|+||||+|+.++..+... + ..+..+++... ..
T Consensus 35 ~~~~i~g~~~~~~~l~~------~l~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 103 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKK------TLKSAN-----LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103 (353)
T ss_dssp STTTCCSCCTTHHHHHH------HTTCTT-----CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH
T ss_pred CHHHhhCCHHHHHHHHH------HHhcCC-----CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch
Confidence 34578999998888873 111110 1128999999999999999999876421 2 12344544332 21
Q ss_pred HHHHHHHHHHc-cCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCC
Q 001919 506 RQNYLNLWSFL-DVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGE 584 (996)
Q Consensus 506 ~~~l~~La~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~g 584 (996)
.. +......+ ........ .. ........++-+||+|+++....- ....|..++......
T Consensus 104 ~~-~~~~~~~~~~~~~~~~~-----------~~-------~~~~~~~~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 104 SI-VREKVKNFARLTVSKPS-----------KH-------DLENYPCPPYKIIILDEADSMTAD-AQSALRRTMETYSGV 163 (353)
T ss_dssp HH-HTTHHHHHHHSCCCCCC-----------TT-------HHHHSCCCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTT
T ss_pred HH-HHHHHHHHhhhcccccc-----------hh-------hcccCCCCCceEEEEECCCccCHH-HHHHHHHHHHhcCCC
Confidence 11 11111100 00000000 00 000111245679999999875321 113444444433346
Q ss_pred eEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHH
Q 001919 585 THIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGL 645 (996)
Q Consensus 585 srIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL 645 (996)
.++|++|.... +. ....+++++++.++..+++...+.... .-..+....|+++++|.|-.+
T Consensus 164 ~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~ 231 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRG 231 (353)
T ss_dssp EEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHH
T ss_pred ceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHH
Confidence 77888775543 21 125789999999999999988764221 234567889999999998753
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.89 E-value=3.7e-05 Score=85.72 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=99.1
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-..|+|++..++++.. .+............|.|+|++|+|||+||+.++++....| +.+++....
T Consensus 27 ~~~~iiG~~~~~~~l~~------~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~~~~~~----- 92 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------FIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTAAPMIE----- 92 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------HHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEEGGGCC-----
T ss_pred CHHHhCChHHHHHHHHH------HHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEecchhcc-----
Confidence 34579999998888763 1100000000123489999999999999999988865443 233321110
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHH-hcCCCEEEEEcCCCCcccccchHHHhhhccCCC------
Q 001919 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKEL-MRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG------ 582 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~------ 582 (996)
. ...+...+ ...+..+|+||+++....- ....|...+....
T Consensus 93 ---------------------------~----~~~~~~~~~~~~~~~vl~lDEi~~l~~~-~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 93 ---------------------------K----SGDLAAILTNLSEGDILFIDEIHRLSPA-IEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp ---------------------------S----HHHHHHHHHTCCTTCEEEEETGGGCCHH-HHHHHHHHHHTSCC-----
T ss_pred ---------------------------c----hhHHHHHHHhccCCCEEEEechhhcCHH-HHHHHHHHHHhccchhhcc
Confidence 0 01111222 1245678888988875210 0012222221110
Q ss_pred ------------CCeEEEEEecCCCc------CCc-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCCh
Q 001919 583 ------------GETHIIISTRLPRV------MNL-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 583 ------------~gsrIIITTR~~~~------~~~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglP 642 (996)
++..+|.+|..... ... ..+++++++.+|..+++...+.... .-..+....|++.+.|.|
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~ 220 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP 220 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH
Confidence 12456666655332 123 5799999999999999988775322 234566788889999998
Q ss_pred HHHHHH
Q 001919 643 MGLAVV 648 (996)
Q Consensus 643 LAL~~~ 648 (996)
-.+..+
T Consensus 221 r~l~~~ 226 (338)
T 3pfi_A 221 RIALRL 226 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 47
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.87 E-value=0.00029 Score=80.38 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=101.9
Q ss_pred cchhccccchHhhhhhhhc---CCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHH
Q 001919 430 KEIEMQSTEAPQRQKTKSS---GRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIR 506 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~---~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~ 506 (996)
.-..++|.+...+++.+.. ..+..+.... ....+-|.|+|++|+|||+||+.++.+... ..+.+++..- .
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~~~~l--~ 185 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNISAASL--T 185 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEeeHHHh--h
Confidence 3457889988888876311 0000110100 011235899999999999999999887543 3344543221 0
Q ss_pred HHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc-------cchHHHhhhc-
Q 001919 507 QNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW-------WDDKLVMDLL- 578 (996)
Q Consensus 507 ~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~-------~~~~~L~~~l- 578 (996)
..+ .+ .....+..+........+.+|+||+++.+..- .....+..++
T Consensus 186 ~~~------~g-------------------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 186 SKY------VG-------------------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLI 240 (389)
T ss_dssp -------------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHH
T ss_pred ccc------cc-------------------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHH
Confidence 000 00 01122333333333566789999999865100 0001111221
Q ss_pred --c----CCCCCeEEEEEecCCCcC------Cc-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-
Q 001919 579 --P----RFGGETHIIISTRLPRVM------NL-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM- 643 (996)
Q Consensus 579 --p----~~~~gsrIIITTR~~~~~------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL- 643 (996)
. .......||.||...... .. ..+.++..+.++-.+++...+.... .-..+....|++.+.|..-
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGS 320 (389)
T ss_dssp HHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHH
T ss_pred HhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHH
Confidence 1 112245566666553321 23 4688999999999999988875322 1234457788888888554
Q ss_pred HHHHHHH
Q 001919 644 GLAVVGA 650 (996)
Q Consensus 644 AL~~~gs 650 (996)
+|..+..
T Consensus 321 ~l~~L~~ 327 (389)
T 3vfd_A 321 DLTALAK 327 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.87 E-value=0.0001 Score=81.77 Aligned_cols=141 Identities=11% Similarity=0.129 Sum_probs=83.4
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHH
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNY 509 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l 509 (996)
.-.+++|.+...+.+.+ .+..+ ....++.+.|++|+|||++|+.+++.+. ..++.+++.....
T Consensus 24 ~~~~ivg~~~~~~~l~~------~l~~~----~~~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~~~~~~~---- 86 (324)
T 3u61_B 24 TIDECILPAFDKETFKS------ITSKG----KIPHIILHSPSPGTGKTTVAKALCHDVN---ADMMFVNGSDCKI---- 86 (324)
T ss_dssp STTTSCCCHHHHHHHHH------HHHTT----CCCSEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEETTTCCH----
T ss_pred CHHHHhCcHHHHHHHHH------HHHcC----CCCeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEcccccCH----
Confidence 44678999988888774 11111 1124688889999999999999998873 2345555432111
Q ss_pred HHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh----cCCCEEEEEcCCCCcc-cccchHHHhhhccCCCCC
Q 001919 510 LNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM----RNIPFLVIIDNLESEK-DWWDDKLVMDLLPRFGGE 584 (996)
Q Consensus 510 ~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~r~LLVLDdvd~~~-~~~~~~~L~~~lp~~~~g 584 (996)
......+.+... .+++.+||||+++... .- ....|..++.....+
T Consensus 87 -----------------------------~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~ 136 (324)
T 3u61_B 87 -----------------------------DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSN 136 (324)
T ss_dssp -----------------------------HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGG
T ss_pred -----------------------------HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCC
Confidence 011111222221 2367899999999864 10 113444444332246
Q ss_pred eEEEEEecCCC-cC-----CcceEEccCCCHHHHHHHHh
Q 001919 585 THIIISTRLPR-VM-----NLEPLKLSYLSGVEAMSLMQ 617 (996)
Q Consensus 585 srIIITTR~~~-~~-----~~~~~~v~~L~~~EA~~Lf~ 617 (996)
++||+||.... +. ...++++++++.+|-.+++.
T Consensus 137 ~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~ 175 (324)
T 3u61_B 137 CSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMK 175 (324)
T ss_dssp CEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHH
T ss_pred cEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 78888887643 21 12689999999888544443
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.85 E-value=0.0001 Score=81.86 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=86.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
.+.|+|++|+||||||+.+++.+...-..++++++. .....+...+.. .....+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~---------------------~~~~~~ 92 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-----DFAQAMVEHLKK---------------------GTINEF 92 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-----HHHHHHHHHHHH---------------------TCHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-----HHHHHHHHHHHc---------------------CcHHHH
Confidence 489999999999999999999876543345667532 222222211110 001122
Q ss_pred HHHHhcCCCEEEEEcCCCCccc--ccchHHHhhhccC-CCCCeEEEEEecCCC-----cC-----Cc---ceEEccCCCH
Q 001919 546 RKELMRNIPFLVIIDNLESEKD--WWDDKLVMDLLPR-FGGETHIIISTRLPR-----VM-----NL---EPLKLSYLSG 609 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~--~~~~~~L~~~lp~-~~~gsrIIITTR~~~-----~~-----~~---~~~~v~~L~~ 609 (996)
...+ .++.+|+||+++.... . ....+..++.. ...+..||+||.+.. +. .. .++++++ +.
T Consensus 93 ~~~~--~~~~vL~iDEi~~l~~~~~-~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 93 RNMY--KSVDLLLLDDVQFLSGKER-TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DN 168 (324)
T ss_dssp HHHH--HTCSEEEEECGGGGTTCHH-HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CH
T ss_pred HHHh--cCCCEEEEcCcccccCChH-HHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CH
Confidence 3333 2367999999987632 1 11233333321 123567888886542 21 11 4689999 99
Q ss_pred HHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001919 610 VEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 610 ~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
++-.+++...+.... .-..+....|++++ |..-
T Consensus 169 ~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 169 KTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHH
Confidence 999999988874211 12345567777777 6543
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.85 E-value=0.00036 Score=78.63 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=102.6
Q ss_pred hhccccchHhhhhhhh-------cCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCcc
Q 001919 432 IEMQSTEAPQRQKTKS-------SGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRY 504 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~-------~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~ 504 (996)
..++|.+...+++.+. ...+... .....-|.|+|++|+|||+||+.++..... ..+.+++..-
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~------~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~~~l- 153 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGL------RGPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISASSL- 153 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG------GSCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEGGGG-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhc------cCCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEehHHh-
Confidence 4578888888877641 1111111 112345899999999999999999987632 2344543210
Q ss_pred HHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccc-------cchHHHhhh
Q 001919 505 IRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDW-------WDDKLVMDL 577 (996)
Q Consensus 505 ~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~-------~~~~~L~~~ 577 (996)
+.... .........+.......++.+|+||+++.+..- .....+..+
T Consensus 154 -----------~~~~~---------------g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 207 (357)
T 3d8b_A 154 -----------TSKWV---------------GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEF 207 (357)
T ss_dssp -----------CCSST---------------THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHH
T ss_pred -----------hcccc---------------chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHH
Confidence 00000 012222333334333567899999999754110 000111122
Q ss_pred ---cc----CCCCCeEEEEEecCCCcC------Cc-ceEEccCCCHHHHHHHHhhhcCCCCc-ccHHHHHHHHHHhCC-C
Q 001919 578 ---LP----RFGGETHIIISTRLPRVM------NL-EPLKLSYLSGVEAMSLMQGSVKDYPI-TEVDALRVIEEKVGR-L 641 (996)
Q Consensus 578 ---lp----~~~~gsrIIITTR~~~~~------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~~-~~~~~a~~iv~~lgg-l 641 (996)
+. ....+..||.||...... .. ..+.++.++.++..+++...+..... -..+....|++.+.| .
T Consensus 208 L~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s 287 (357)
T 3d8b_A 208 LVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFS 287 (357)
T ss_dssp HHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCC
T ss_pred HHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCC
Confidence 21 112245566667554321 22 47889999999999999877643221 134557788888888 4
Q ss_pred hHHHHHHHHH
Q 001919 642 TMGLAVVGAI 651 (996)
Q Consensus 642 PLAL~~~gs~ 651 (996)
+-.|..+..+
T Consensus 288 ~~dl~~l~~~ 297 (357)
T 3d8b_A 288 GADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556665544
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.85 E-value=0.00022 Score=80.27 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecC------------C-Cc-----CCcceEEccCCCHHHHHHH
Q 001919 554 PFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRL------------P-RV-----MNLEPLKLSYLSGVEAMSL 615 (996)
Q Consensus 554 r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~------------~-~~-----~~~~~~~v~~L~~~EA~~L 615 (996)
+.+|+||+++....- ....|...+..... ..+|++|.. . .+ .....+.+++++.+|..++
T Consensus 190 ~~vl~IDEi~~l~~~-~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i 267 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-SFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI 267 (368)
T ss_dssp BCEEEEESGGGSBHH-HHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred CceEEEhhccccChH-HHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHH
Confidence 459999999976321 01233344433322 234444431 1 12 1235689999999999999
Q ss_pred HhhhcCCC-CcccHHHHHHHHHHhC-CChHHHH
Q 001919 616 MQGSVKDY-PITEVDALRVIEEKVG-RLTMGLA 646 (996)
Q Consensus 616 f~~~a~~~-~~~~~~~a~~iv~~lg-glPLAL~ 646 (996)
+...+... ..-..+....|++++. |.|--+.
T Consensus 268 l~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 268 LRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHH
Confidence 99877521 2234566788999987 7665443
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.84 E-value=9.8e-05 Score=73.93 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=36.9
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
-..|+||+.+++++.+. +... ..+.|.|+|++|+|||+||+.+++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~------l~~~-----~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQI------LSRR-----TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHH------HTSS-----SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHH------HhCC-----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34689999999988741 1111 1235789999999999999999998754
No 53
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00053 Score=76.18 Aligned_cols=157 Identities=12% Similarity=0.150 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|+|||+||+.+++.... ...+.+++..- +....+ .....+..+
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~--~~~~~i~~~~l------------~~~~~g---------------~~~~~~~~l 97 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANN--STFFSISSSDL------------VSKWLG---------------ESEKLVKNL 97 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTS--CEEEEEECCSS------------CCSSCC---------------SCHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHcCC--CcEEEEEhHHH------------Hhhhhh---------------HHHHHHHHH
Confidence 5899999999999999999988621 12334433210 000000 112234444
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc---c----chHHHhhhc---cC---CCCCeEEEEEecCCCcC------Cc-ceEEcc
Q 001919 546 RKELMRNIPFLVIIDNLESEKDW---W----DDKLVMDLL---PR---FGGETHIIISTRLPRVM------NL-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~---~----~~~~L~~~l---p~---~~~gsrIIITTR~~~~~------~~-~~~~v~ 605 (996)
.+.....++.+|+||+++....- . ....+..++ .. ...+..||.||...... .. ..+.++
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeC
Confidence 44444578899999999975110 0 001112222 11 12355666667555432 22 578899
Q ss_pred CCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCCh-HHHHHHHHH
Q 001919 606 YLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRLT-MGLAVVGAI 651 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lgglP-LAL~~~gs~ 651 (996)
..+.++-.++|..++...+.. .......|++.+.|.. -.|..+...
T Consensus 178 ~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 178 LPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp CCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999888644422 3455778899888874 345555443
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.76 E-value=0.0002 Score=77.22 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.-+.|+|++|+|||+||+.+++.....| +.+++.. ..++... ......+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~-----------~~~g~~~---------------~~~~~~~~~ 115 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPD-----------KMIGFSE---------------TAKCQAMKK 115 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGG-----------GCTTCCH---------------HHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHH-----------HhcCCch---------------HHHHHHHHH
Confidence 3589999999999999999999854332 2222211 0011000 001111222
Q ss_pred HHHHHhcCCCEEEEEcCCCCc------ccccch---HHHhhhccC---CCCCeEEEEEecCCC------cC-C-cceEEc
Q 001919 545 VRKELMRNIPFLVIIDNLESE------KDWWDD---KLVMDLLPR---FGGETHIIISTRLPR------VM-N-LEPLKL 604 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~------~~~~~~---~~L~~~lp~---~~~gsrIIITTR~~~------~~-~-~~~~~v 604 (996)
+.+.....++.+||||+++.+ ...... ..|..++.. .+....||.||.... +. . ...+++
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcC
Confidence 222222467889999999864 110011 223333332 222445666776652 22 2 257889
Q ss_pred cCCCH-HHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC
Q 001919 605 SYLSG-VEAMSLMQGSVKDYPITEVDALRVIEEKVGRL 641 (996)
Q Consensus 605 ~~L~~-~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl 641 (996)
++++. ++-.+++... ... ..+....|++.+.|.
T Consensus 196 p~l~~r~~i~~i~~~~-~~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 196 PNIATGEQLLEALELL-GNF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp CCEEEHHHHHHHHHHH-TCS---CHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHhc-CCC---CHHHHHHHHHHhcCC
Confidence 99988 5555555543 222 244577888888874
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.76 E-value=0.00024 Score=80.15 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=88.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|+|||+||+.+++.+... .+.+++ . .+ +....+ .....+..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~---~~~v~~-----~----~l---~~~~~g---------------~~~~~~~~~ 135 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANST---FFSVSS-----S----DL---VSKWMG---------------ESEKLVKQL 135 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCE---EEEEEH-----H----HH---HSCC------------------CHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC---EEEeeH-----H----HH---hhhhcc---------------hHHHHHHHH
Confidence 38899999999999999999987432 233421 1 11 110000 111223334
Q ss_pred HHHHhcCCCEEEEEcCCCCccccc-------c---hHHHhhhcc---CCCCCeEEEEEecCCCcC------Cc-ceEEcc
Q 001919 546 RKELMRNIPFLVIIDNLESEKDWW-------D---DKLVMDLLP---RFGGETHIIISTRLPRVM------NL-EPLKLS 605 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~-------~---~~~L~~~lp---~~~~gsrIIITTR~~~~~------~~-~~~~v~ 605 (996)
.......++.+|+||+++.+..-- . ..++...+. ....+..||.||...... .. ..+.++
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 215 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIP 215 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECC
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeC
Confidence 444435688999999999753100 0 012222221 112345666666554321 23 578899
Q ss_pred CCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCC-hHHHHHHH
Q 001919 606 YLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRL-TMGLAVVG 649 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lggl-PLAL~~~g 649 (996)
.++.++-.++|..++...+.. .......|++.+.|. +-.|..+.
T Consensus 216 ~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 216 LPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999888754422 344577888888884 43455444
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.76 E-value=0.00045 Score=86.97 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=92.5
Q ss_pred ccchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-------CCEEEEEeCc
Q 001919 429 EKEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-------YKMVLWVGGE 501 (996)
Q Consensus 429 ~~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-------F~~v~wi~~~ 501 (996)
..-..++||+.+++++.. .+.+. ...-+.|+|++|+|||+||+.++.++... -..++++++.
T Consensus 167 ~~ld~viGr~~~i~~l~~------~l~~~-----~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQ------ILLRR-----TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp TCSCCCCSCHHHHHHHHH------HHHCS-----SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred CCCcccCCcHHHHHHHHH------HHhcC-----CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 344578999999998873 11111 11237899999999999999999987542 1245566432
Q ss_pred CccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhc-CCCEEEEEcCCCCccc-------ccchHH
Q 001919 502 SRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMR-NIPFLVIIDNLESEKD-------WWDDKL 573 (996)
Q Consensus 502 ~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~~~-------~~~~~~ 573 (996)
.- .. +... .......+..+.+.+.. +++.+|+||+++.+.. +.-...
T Consensus 236 ~l--~~---------g~~~--------------~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~ 290 (854)
T 1qvr_A 236 SL--LA---------GAKY--------------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNM 290 (854)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------
T ss_pred Hh--hc---------cCcc--------------chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHH
Confidence 11 00 0000 01222334444444423 4789999999997531 100123
Q ss_pred HhhhccCCCCCeEEEEEecC---------CCcC-CcceEEccCCCHHHHHHHHhhhcC-----CCCcccHHHHHHHHHHh
Q 001919 574 VMDLLPRFGGETHIIISTRL---------PRVM-NLEPLKLSYLSGVEAMSLMQGSVK-----DYPITEVDALRVIEEKV 638 (996)
Q Consensus 574 L~~~lp~~~~gsrIIITTR~---------~~~~-~~~~~~v~~L~~~EA~~Lf~~~a~-----~~~~~~~~~a~~iv~~l 638 (996)
|..++.. .+..+|.+|.. +.+. ....+.|++++.++..+++..... ....-..+....+++++
T Consensus 291 L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 291 LKPALAR--GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp -HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 4444433 23556655542 2222 236799999999999999975542 11112344556666666
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.74 E-value=0.00013 Score=80.10 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=79.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCC----EEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYK----MVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~----~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
.+.|+|++|+|||+||+.+++.+..... .++.++.. .+..... .....
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------~l~~~~~--------------g~~~~- 120 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-------------DLVGQYI--------------GHTAP- 120 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-------------GTCCSST--------------TCHHH-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-------------Hhhhhcc--------------cccHH-
Confidence 5899999999999999999987754321 33444311 1100000 01111
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCccc-----ccch---HHHhhhccCCCCCeEEEEEecCC----------CcC-Cc-ce
Q 001919 542 ICRVRKELMRNIPFLVIIDNLESEKD-----WWDD---KLVMDLLPRFGGETHIIISTRLP----------RVM-NL-EP 601 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~~~-----~~~~---~~L~~~lp~~~~gsrIIITTR~~----------~~~-~~-~~ 601 (996)
.+...+......+|+||+++.+.. -... ..|..++.....+..||.||... .+. .. ..
T Consensus 121 --~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~ 198 (309)
T 3syl_A 121 --KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHH 198 (309)
T ss_dssp --HHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEE
T ss_pred --HHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeE
Confidence 122333222456999999995410 0011 23334443333467788887532 221 23 68
Q ss_pred EEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHh
Q 001919 602 LKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKV 638 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~l 638 (996)
+.+++++.++-.+++...+.... .-..+....+++++
T Consensus 199 i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~ 236 (309)
T 3syl_A 199 IEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYI 236 (309)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999988775222 12334444454443
No 58
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=5e-05 Score=78.03 Aligned_cols=34 Identities=32% Similarity=0.292 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+.|+|++|+|||+||+.+++....+...++|++
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5899999999999999999998876665677774
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00016 Score=82.03 Aligned_cols=145 Identities=17% Similarity=0.304 Sum_probs=88.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|+||.|||.||+++++.....| +.+++.. .+.. +.......+..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s~------------l~sk---------------~vGese~~vr~lF 234 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKF---IRVSGAE------------LVQK---------------YIGEGSRMVRELF 234 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGGG------------GSCS---------------STTHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhHH------------hhcc---------------ccchHHHHHHHHH
Confidence 89999999999999999999876543 3343211 0100 0012233444455
Q ss_pred HHHhcCCCEEEEEcCCCCccccc-------c---hHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW-------D---DKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~-------~---~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
..-+...+++|+||++|....-- + ...+..+| ..+ ..+..||.||..+... .. ..+
T Consensus 235 ~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 235 VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKI 314 (405)
T ss_dssp HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEE
T ss_pred HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEE
Confidence 44446889999999999752100 0 01223333 211 2245566677665542 22 689
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCCh
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRLT 642 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lgglP 642 (996)
+++..+.++-.++|..+....+.. +.+ ...|++.+.|.-
T Consensus 315 ~i~lPd~~~R~~Il~~~~~~~~l~~dvd-l~~lA~~t~G~S 354 (405)
T 4b4t_J 315 EFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCS 354 (405)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSBCCSSCC-HHHHHHHCCSCC
T ss_pred EcCCcCHHHHHHHHHHHhcCCCCCccCC-HHHHHHHCCCCC
Confidence 999999999999999887643321 111 457888887764
No 60
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=0.00043 Score=77.35 Aligned_cols=169 Identities=12% Similarity=0.086 Sum_probs=94.3
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcC-CC-EEEEEeCcCccHHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQR-YK-MVLWVGGESRYIRQN 508 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~-~v~wi~~~~~~~~~~ 508 (996)
-..++|.+..++.+.. .+..+ ..+-+.++|++|+||||+|+.++..+... +. .+.-+++...
T Consensus 24 ~~~~~g~~~~~~~L~~------~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----- 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRK------FVDEG-----KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----- 87 (340)
T ss_dssp GGGCCSCHHHHHHHHH------HHHTT-----CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-----
T ss_pred HHHhcCcHHHHHHHHH------HHhcC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-----
Confidence 3456787777777663 11111 00128999999999999999999986532 11 1222221110
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHh-----cCCCEEEEEcCCCCcccccchHHHhhhccCCCC
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELM-----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGG 583 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~ 583 (996)
. ........+..... ...+-++|+|+++....- ....|..++.....
T Consensus 88 ---------------~------------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~ 139 (340)
T 1sxj_C 88 ---------------R------------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-AQNALRRVIERYTK 139 (340)
T ss_dssp ---------------C------------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTT
T ss_pred ---------------c------------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-HHHHHHHHHhcCCC
Confidence 0 01111112222221 134678999999875321 11345555543334
Q ss_pred CeEEEEEecCCC-c-----CCcceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH
Q 001919 584 ETHIIISTRLPR-V-----MNLEPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 584 gsrIIITTR~~~-~-----~~~~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL 643 (996)
.+++|++|.... + .....+++.+++.++..+.+...+.... .-..+..+.+++.++|-+-
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHH
T ss_pred CeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 677887775543 2 1235789999999998888877662111 1234456677777777553
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=5.4e-05 Score=76.40 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
..++|+|++|+||||||+.++..+. ..-..+.+++ ..+.+..+...+.... ..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~-----------------~~---- 92 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----TKDLIFRLKHLMDEGK-----------------DT---- 92 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----HHHHHHHHHHHHHHTC-----------------CS----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----HHHHHHHHHHHhcCch-----------------HH----
Confidence 3689999999999999999999875 2222345563 3333333332221100 00
Q ss_pred HHHHHHhcCCCEEEEEcCCCC--cccccchHHHhhhccCC-CCCeEEEEEecC
Q 001919 544 RVRKELMRNIPFLVIIDNLES--EKDWWDDKLVMDLLPRF-GGETHIIISTRL 593 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~--~~~~~~~~~L~~~lp~~-~~gsrIIITTR~ 593 (996)
.+.+.+ .++-+||||+++. ...+ ....+..++... ..|..||+||..
T Consensus 93 ~~~~~~--~~~~llilDE~~~~~~~~~-~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 93 KFLKTV--LNSPVLVLDDLGSERLSDW-QRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHH--HTCSEEEEETCSSSCCCHH-HHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHh--cCCCEEEEeCCCCCcCCHH-HHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 122333 2456899999984 2222 234455544321 236788888865
No 62
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=0.0012 Score=72.06 Aligned_cols=186 Identities=15% Similarity=0.141 Sum_probs=101.2
Q ss_pred hhccccchHhhhhhhhc---CCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHH
Q 001919 432 IEMQSTEAPQRQKTKSS---GRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQN 508 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~---~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~ 508 (996)
..++|.+...+.+.+.. ..+..+..+- ......|.|+|++|+|||+||+.++...... .+.+++..-
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l----- 90 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNISAASL----- 90 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEESTTT-----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEeeHHHH-----
Confidence 46788888877776310 0011111110 0123468999999999999999999876432 234433210
Q ss_pred HHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc-------chHHHhhh---c
Q 001919 509 YLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW-------DDKLVMDL---L 578 (996)
Q Consensus 509 l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~-------~~~~L~~~---l 578 (996)
..... .........+........+.+|+||+++....-. .......+ +
T Consensus 91 -------~~~~~---------------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 148 (297)
T 3b9p_A 91 -------TSKYV---------------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEF 148 (297)
T ss_dssp -------SSSSC---------------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHH
T ss_pred -------hhccc---------------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHH
Confidence 00000 0122333334444435678899999998752100 00111111 1
Q ss_pred ---cCC--CCCeEEEEEecCCCcC------Cc-ceEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChH-H
Q 001919 579 ---PRF--GGETHIIISTRLPRVM------NL-EPLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTM-G 644 (996)
Q Consensus 579 ---p~~--~~gsrIIITTR~~~~~------~~-~~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPL-A 644 (996)
+.. +.+..||.||...... .. ..+.++..+.++-.+++...+...+ .-..+....|++.+.|.+- +
T Consensus 149 ~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 149 DGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp HHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHH
T ss_pred hcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHH
Confidence 111 1245666677665321 12 5788888899998888887765322 1234557788888888875 5
Q ss_pred HHHHH
Q 001919 645 LAVVG 649 (996)
Q Consensus 645 L~~~g 649 (996)
|..+.
T Consensus 229 l~~l~ 233 (297)
T 3b9p_A 229 LTALA 233 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 63
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.63 E-value=0.00036 Score=81.08 Aligned_cols=157 Identities=11% Similarity=0.149 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+-|.|+|++|+|||+||+.+++.... ...+.+++. .+... ..+.. ...+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~~--~l~~~------~~g~~-------------------~~~~~~ 218 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANN--STFFSISSS--DLVSK------WLGES-------------------EKLVKN 218 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECCC-----------------C-------------------CCTHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeHH--HHHhh------hcchH-------------------HHHHHH
Confidence 35899999999999999999988621 123334322 11100 01100 001222
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccc-------cchHHHhhhcc---C---CCCCeEEEEEecCCCcC------Cc-ceEEc
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDW-------WDDKLVMDLLP---R---FGGETHIIISTRLPRVM------NL-EPLKL 604 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~-------~~~~~L~~~lp---~---~~~gsrIIITTR~~~~~------~~-~~~~v 604 (996)
+........+.+|+||+++.+..- .....+..++. . ...+..||.||...... .. ..+.+
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 298 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 298 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEEC
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEe
Confidence 333333567899999999975110 00112222322 1 12356666677554331 23 57889
Q ss_pred cCCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCC-hHHHHHHHH
Q 001919 605 SYLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRL-TMGLAVVGA 650 (996)
Q Consensus 605 ~~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lggl-PLAL~~~gs 650 (996)
+..+.++-.++|..++...+.. .......|++.+.|. +-.|..+..
T Consensus 299 ~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999999988654422 344577888888885 444555443
No 64
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.55 E-value=0.00072 Score=74.25 Aligned_cols=150 Identities=14% Similarity=0.207 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..|.|+|++|+|||+||+.++..... ..+.+++ ...+. ...+... ..+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~~---~~i~v~~-----~~l~~---~~~g~~~-------------------~~~~~ 99 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQA---NFISIKG-----PELLT---MWFGESE-------------------ANVRE 99 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTC---EEEEECH-----HHHHH---HHHTTCT-------------------THHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhCC---CEEEEEh-----HHHHh---hhcCchH-------------------HHHHH
Confidence 35899999999999999999987642 2334421 11111 1111110 11122
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccc----------cch---HHHhhhccC--CCCCeEEEEEecCCCc-----C---Cc-c
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDW----------WDD---KLVMDLLPR--FGGETHIIISTRLPRV-----M---NL-E 600 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~----------~~~---~~L~~~lp~--~~~gsrIIITTR~~~~-----~---~~-~ 600 (996)
+.+......+.+|+||+++.+..- ... .++...+.. ...+..||.||..... . .. .
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~ 179 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQ 179 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccce
Confidence 222222567899999999863100 000 122222221 1235677777765432 1 22 5
Q ss_pred eEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHH
Q 001919 601 PLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLA 644 (996)
.+.++.++.++-.++|..++...+.........++..+.|.|-+
T Consensus 180 ~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 180 LIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred EEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 78999999999999998877533211111133566667777644
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00027 Score=81.33 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=86.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|++|.|||.||++++++....| +.+++.. .+.... ......+..+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs~s~------------L~sk~v---------------Gesek~ir~l 294 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATF---IRVIGSE------------LVQKYV---------------GEGARMVREL 294 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEE---EEEEGGG------------GCCCSS---------------SHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCe---EEEEhHH------------hhcccC---------------CHHHHHHHHH
Confidence 489999999999999999999876543 3333210 011000 1222334444
Q ss_pred HHHHhcCCCEEEEEcCCCCccccc-------c---hHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ce
Q 001919 546 RKELMRNIPFLVIIDNLESEKDWW-------D---DKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~~-------~---~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~ 601 (996)
...-+...+++|++|++|....-- . ...+..+| ..+ ..+..||.||...... .. ..
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~ 374 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRK 374 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEE
T ss_pred HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEE
Confidence 444446889999999999752100 0 01122222 111 2245566677655441 23 68
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001919 602 LKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
++++..+.++-.++|..++...+....-....|++.+.|.-
T Consensus 375 I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 375 VEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST 415 (467)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence 99999999999999998887543221111456778887764
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00023 Score=82.03 Aligned_cols=146 Identities=17% Similarity=0.250 Sum_probs=86.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|++|.|||.||+++++.....| +.+++.. .+... .......+..+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~------------l~sk~---------------~Gese~~ir~~ 266 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASG------------IVDKY---------------IGESARIIREM 266 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGG------------TCCSS---------------SSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhh------------hcccc---------------chHHHHHHHHH
Confidence 489999999999999999999876443 3343211 01000 01222334444
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhc---cCC--CCCeEEEEEecCCCcC-----C---c-ce
Q 001919 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLL---PRF--GGETHIIISTRLPRVM-----N---L-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~l---p~~--~~gsrIIITTR~~~~~-----~---~-~~ 601 (996)
...-....+++|++|++|....- .+. ..+..+| ..+ ..+..||.||..+... . . ..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK 346 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEE
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCcccee
Confidence 44444688999999999974210 010 1122332 211 2245677777665431 1 2 57
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCc-ccHHHHHHHHHHhCCCh
Q 001919 602 LKLSYLSGVEAMSLMQGSVKDYPI-TEVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~-~~~~~a~~iv~~lgglP 642 (996)
++++..+.++-.++|..++...+. .+.+ ...|++.+.|+-
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~d~d-l~~lA~~t~G~s 387 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFD-FEAAVKMSDGFN 387 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTSCBCSCCC-HHHHHHTCCSCC
T ss_pred eecCCcCHHHHHHHHHHHhcCCCCCcccC-HHHHHHhCCCCC
Confidence 899999999999999888754331 1111 456777777754
No 67
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00036 Score=79.55 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|++|.|||.||+++++.....| +.+++.. .+... ....+..+..+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~f---i~v~~s~------------l~sk~---------------vGesek~ir~l 267 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATF---LRIVGSE------------LIQKY---------------LGDGPRLCRQI 267 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEE---EEEESGG------------GCCSS---------------SSHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCE---EEEEHHH------------hhhcc---------------CchHHHHHHHH
Confidence 389999999999999999999876543 2332210 01100 01223344455
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cc---hHHHhhhc---cC--CCCCeEEEEEecCCCcC--------Cc-ce
Q 001919 546 RKELMRNIPFLVIIDNLESEKDW-------WD---DKLVMDLL---PR--FGGETHIIISTRLPRVM--------NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~---~~~L~~~l---p~--~~~gsrIIITTR~~~~~--------~~-~~ 601 (996)
....+...+++|++|++|....- .+ ...+..+| .. ...+..||.||...... .. ..
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~ 347 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRK 347 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEE
T ss_pred HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEE
Confidence 55444688999999999964210 00 01222332 11 12245666677665431 12 57
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCCh
Q 001919 602 LKLSYLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lgglP 642 (996)
++++..+.++-.++|..++...+.. +.+ ...|++.+.|.-
T Consensus 348 I~v~lPd~~~R~~Il~~~l~~~~l~~dvd-l~~LA~~T~GfS 388 (437)
T 4b4t_I 348 ILFENPDLSTKKKILGIHTSKMNLSEDVN-LETLVTTKDDLS 388 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTSCBCSCCC-HHHHHHHCCSCC
T ss_pred EEcCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCC
Confidence 8999999999999999888644321 111 456777777764
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00022 Score=81.98 Aligned_cols=173 Identities=15% Similarity=0.249 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|+||.|||.||+++++.....| +.+++.. .+.... ......+..+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~~s~------------l~~~~v---------------Gese~~ir~l 266 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATF---LKLAAPQ------------LVQMYI---------------GEGAKLVRDA 266 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGG------------GCSSCS---------------SHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCE---EEEehhh------------hhhccc---------------chHHHHHHHH
Confidence 489999999999999999999875433 3333211 011000 1223334444
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ce
Q 001919 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~ 601 (996)
...-....+++|++|++|....- .+. ..+..+| ..+ ..+..||.||..+... .. ..
T Consensus 267 F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~ 346 (434)
T 4b4t_M 267 FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRK 346 (434)
T ss_dssp HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEE
T ss_pred HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEE
Confidence 44444578899999999864110 000 1122222 222 1244566677665431 12 68
Q ss_pred EEccCCCHHHHHHHHhhhcCCCCc-ccHHHHHHHHHHhCCChHH-HHHHH---HH--Hhc--CCCCHHHHHHHHhcC
Q 001919 602 LKLSYLSGVEAMSLMQGSVKDYPI-TEVDALRVIEEKVGRLTMG-LAVVG---AI--LSE--LPINPSRLLDTINRM 669 (996)
Q Consensus 602 ~~v~~L~~~EA~~Lf~~~a~~~~~-~~~~~a~~iv~~lgglPLA-L~~~g---s~--L~~--~~~s~~e~l~~L~~~ 669 (996)
++++..+.++-.++|..++...+. .+.+ ...|++.+.|+-=| |+.+. +. ++. ..++.+++.+.+.+.
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~~~~~dvd-l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 347 IEFPLPSEDSRAQILQIHSRKMTTDDDIN-WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp EECCCCCHHHHHHHHHHHHHHSCBCSCCC-HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred EEeCCcCHHHHHHHHHHHhcCCCCCCcCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 899999999999999877753221 1111 45677887775422 22221 11 222 224666777666653
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.36 E-value=0.00071 Score=79.14 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=80.9
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC-----C--EEEEEeCcC
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY-----K--MVLWVGGES 502 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-----~--~v~wi~~~~ 502 (996)
+-..++||+.+++++.. .+.+. ...-+.|+|++|+|||+||+.++.++...+ . .++.+++.
T Consensus 178 ~ld~iiGr~~~i~~l~~------~l~r~-----~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIE------VLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHH------HHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCCccCcHHHHHHHHH------HHhcc-----CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence 34469999999998874 11111 112378999999999999999999875432 1 12222211
Q ss_pred ccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCC
Q 001919 503 RYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG 582 (996)
Q Consensus 503 ~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~ 582 (996)
....+ .....+..+.+.+...++.+|++|.-.+. ...|...+..
T Consensus 246 ----------~~~~g-------------------~~e~~~~~~~~~~~~~~~~iLfiD~~~~a-----~~~L~~~L~~-- 289 (468)
T 3pxg_A 246 ----------TKYRG-------------------EFEDRLKKVMDEIRQAGNIILFIDAAIDA-----SNILKPSLAR-- 289 (468)
T ss_dssp ------------------------------------CTTHHHHHHHHHTCCCCEEEECC-------------CCCTTS--
T ss_pred ----------ccccc-------------------hHHHHHHHHHHHHHhcCCeEEEEeCchhH-----HHHHHHhhcC--
Confidence 00000 00111233334443567889999921110 0223333332
Q ss_pred CCeEEEEEecCCC------cC-----CcceEEccCCCHHHHHHHHhhhcC
Q 001919 583 GETHIIISTRLPR------VM-----NLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 583 ~gsrIIITTR~~~------~~-----~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
+..+||.+|.... +. ....+.++.++.++..++|...+.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 2456666665544 21 136799999999999999997764
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.001 Score=70.99 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=78.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.|+|++|+||||||+.+++.....| +.+++..- . ..... ... ..+..+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~~~--~----------~~~~~--------------~~~-~~~~~~~ 97 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSDF--V----------EMFVG--------------VGA-SRVRDMF 97 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE---EEECSCSS--T----------TSCCC--------------CCH-HHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHHHH--H----------HHhhh--------------hhH-HHHHHHH
Confidence 88999999999999999998764333 44543211 0 00000 011 1222233
Q ss_pred HHHhcCCCEEEEEcCCCCccccc--------c--hHHHhhhc---cC--CCCCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW--------D--DKLVMDLL---PR--FGGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~--------~--~~~L~~~l---p~--~~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
+......+.++++|+++....-. . ...+..++ .. ...+..||.||...... .. ..+
T Consensus 98 ~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i 177 (257)
T 1lv7_A 98 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177 (257)
T ss_dssp HHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEE
T ss_pred HHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEE
Confidence 33324567899999996531100 0 01222222 11 12346677777665421 12 567
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCC-ChH
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGR-LTM 643 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgg-lPL 643 (996)
.++.++.++-.+++..++...+.........++....| .+-
T Consensus 178 ~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 178 VVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHH
Confidence 88888988888888877653331111113345555666 443
No 71
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.28 E-value=0.00014 Score=70.79 Aligned_cols=47 Identities=11% Similarity=-0.059 Sum_probs=30.9
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHH
Q 001919 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+++|+...++++.+. +... .....-|.|+|.+|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~------~~~~---a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRR------LQQL---SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHH------HHHH---TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHH------HHHH---hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 467888888877631 1000 0011238899999999999999988754
No 72
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.26 E-value=0.0012 Score=72.13 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
..+.|+|++|+|||+||+.+++.+...| +.+++. . +. ....+. . ..........
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~---i~v~~~-----~----l~---~~~~g~-~----------~~~i~~~f~~ 90 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINP---IMMSAG-----E----LE---SGNAGE-P----------AKLIRQRYRE 90 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCC---EEEEHH-----H----HH---CC---H-H----------HHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCE---EEEeHH-----H----hh---hccCch-h----------HHHHHHHHHH
Confidence 4689999999999999999999885443 333211 1 10 000000 0 0011112222
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccc------------hHHHhhhcc-------------CCCCCeEEEEEecCCCcCC-
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDWWD------------DKLVMDLLP-------------RFGGETHIIISTRLPRVMN- 598 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~------------~~~L~~~lp-------------~~~~gsrIIITTR~~~~~~- 598 (996)
..+..+...+.+|+||++|....-.+ ...|..++. ....+..||.||.+.....
T Consensus 91 a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~ 170 (293)
T 3t15_A 91 AAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 170 (293)
T ss_dssp HHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--C
T ss_pred HHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCH
Confidence 22222356789999999976421000 022223321 0123577888887654311
Q ss_pred -------c-ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHH
Q 001919 599 -------L-EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 599 -------~-~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLA 644 (996)
. ..+.++ +.++-.+++..+...... ..+...+++....|-.|.
T Consensus 171 al~R~~R~d~~i~~P--~~~~r~~Il~~~~~~~~~-~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 171 PLIRDGRMEKFYWAP--TREDRIGVCTGIFRTDNV-PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHEEEEEECC--CHHHHHHHHHHHHGGGCC-CHHHHHHHHHHSCSCCHH
T ss_pred HHhCCCCCceeEeCc--CHHHHHHHHHHhccCCCC-CHHHHHHHhCCCCcccHH
Confidence 1 345543 888889998877652222 233344555655555554
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00075 Score=77.54 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=81.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
=|.++|++|+|||.||+++++.....| +.+++.. .+.... ......+..+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~~~~------------l~~~~~---------------Ge~e~~ir~l 257 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAF---IRVNGSE------------FVHKYL---------------GEGPRMVRDV 257 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEE---EEEEGGG------------TCCSSC---------------SHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe---EEEecch------------hhcccc---------------chhHHHHHHH
Confidence 389999999999999999999875433 3343211 011000 1122334444
Q ss_pred HHHHhcCCCEEEEEcCCCCccc-------ccc---hHHHhhhc---cC--CCCCeEEEEEecCCCcC--------Cc-ce
Q 001919 546 RKELMRNIPFLVIIDNLESEKD-------WWD---DKLVMDLL---PR--FGGETHIIISTRLPRVM--------NL-EP 601 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~-------~~~---~~~L~~~l---p~--~~~gsrIIITTR~~~~~--------~~-~~ 601 (996)
...-....+++|++|++|.... ..+ ...+..+| .. ...+..||.||...... .. ..
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~ 337 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRK 337 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEE
T ss_pred HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEE
Confidence 4444467899999999985310 000 01223333 11 12355677777665542 12 46
Q ss_pred EEccCC-CHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCCh
Q 001919 602 LKLSYL-SGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRLT 642 (996)
Q Consensus 602 ~~v~~L-~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lgglP 642 (996)
++++.+ +.++-.++|..++...+.. +.+ ...|++.+.|.-
T Consensus 338 I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d-l~~lA~~t~G~s 379 (428)
T 4b4t_K 338 IEFPSLRDRRERRLIFGTIASKMSLAPEAD-LDSLIIRNDSLS 379 (428)
T ss_dssp EECCSSCCHHHHHHHHHHHHHSSCBCTTCC-HHHHHHHTTTCC
T ss_pred EEcCCCCCHHHHHHHHHHHhcCCCCCcccC-HHHHHHHCCCCC
Confidence 788654 6666677777776533311 111 456777777754
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.23 E-value=0.0012 Score=81.55 Aligned_cols=149 Identities=14% Similarity=0.215 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
+=|.++|++|+|||+||++++++.... .+.|++. . .++... ...+..+..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~~~-----~-------l~sk~~---------------gese~~lr~ 288 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAF---FFLINGP-----E-------IMSKLA---------------GESESNLRK 288 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEEHH-----H-------HHSSCT---------------THHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEEhH-----H-------hhcccc---------------hHHHHHHHH
Confidence 348999999999999999999876432 3455311 1 111111 112233444
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccc-------cchHHHhhh---ccCC--CCCeEEEEEecCCCc-----C---Cc-ceEE
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDW-------WDDKLVMDL---LPRF--GGETHIIISTRLPRV-----M---NL-EPLK 603 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~-------~~~~~L~~~---lp~~--~~gsrIIITTR~~~~-----~---~~-~~~~ 603 (996)
+.+.-....+.+|+||++|.+-.- .+...+..+ +... ..+..||.||..... . .. ..++
T Consensus 289 lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~ 368 (806)
T 3cf2_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVD 368 (806)
T ss_dssp HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEE
T ss_pred HHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEe
Confidence 444444678999999999975210 011112222 2111 124556666665443 1 12 5799
Q ss_pred ccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChH
Q 001919 604 LSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTM 643 (996)
Q Consensus 604 v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPL 643 (996)
++..+.++-.++|..+....+....-....|++.+.|.--
T Consensus 369 i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp CCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCH
Confidence 9999999999999988864332111124567888777653
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.21 E-value=0.002 Score=67.37 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+..+.++.++|.+|..+|++++|.+++++++.+.++..|++||....++.+||.++...|+.
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 33677899999999999999999999999999999999999999999999999999877764
No 76
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.19 E-value=0.0024 Score=74.47 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=93.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.|+|++|+|||+||+.++.+....| +.+++..- .....+ ........+.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f---~~is~~~~------------~~~~~g---------------~~~~~~r~lf 101 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPF---FHISGSDF------------VELFVG---------------VGAARVRDLF 101 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGT------------TTCCTT---------------HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHHH------------HHHHhc---------------ccHHHHHHHH
Confidence 78999999999999999999765433 33432211 000000 0111122222
Q ss_pred HHHhcCCCEEEEEcCCCCccccc----------chHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW----------DDKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~----------~~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
.......+.+|+||+++.+..-. ....+..++ ..+ ..+..||.||...... .. ..+
T Consensus 102 ~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i 181 (476)
T 2ce7_A 102 AQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181 (476)
T ss_dssp HHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEE
T ss_pred HHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEe
Confidence 22225778999999998742100 001223333 111 1256677777665431 12 478
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCChHH-HHH----HHHH-Hhc--CCCCHHHHHHHHhc
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLTMG-LAV----VGAI-LSE--LPINPSRLLDTINR 668 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglPLA-L~~----~gs~-L~~--~~~s~~e~l~~L~~ 668 (996)
.++.++.++-.++|..++...+.........+++.+.|..-+ |.. ++.. .+. ..++.+++.+.+.+
T Consensus 182 ~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 899999988888988777643311111144577888887622 222 2211 111 23577777776665
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.14 E-value=0.0034 Score=77.89 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=88.0
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC------CE-EEEEeCcC
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY------KM-VLWVGGES 502 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~~-v~wi~~~~ 502 (996)
+-..++||+.+++++.+... +. ...-+.|+|.+|+|||+||+.++.++.... .. ++.++...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~------~~-----~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~ 252 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLC------RR-----RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHT------SS-----SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred CCCCccCCHHHHHHHHHHHh------cc-----CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH
Confidence 44578999999998874111 11 112478999999999999999999874321 22 22222110
Q ss_pred ccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc----chHH----H
Q 001919 503 RYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW----DDKL----V 574 (996)
Q Consensus 503 ~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~----~~~~----L 574 (996)
+ ..+.. ........+..+.+.+...++.+|+||+++.+..-- +... |
T Consensus 253 --l---------~~~~~--------------~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L 307 (758)
T 1r6b_X 253 --L---------LAGTK--------------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI 307 (758)
T ss_dssp -------------CCCC--------------CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH
T ss_pred --H---------hcccc--------------ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHH
Confidence 0 00000 011234445556666644567999999999751000 0122 2
Q ss_pred hhhccCCCCCeEEEEEecCCC----------cC-CcceEEccCCCHHHHHHHHhhhc
Q 001919 575 MDLLPRFGGETHIIISTRLPR----------VM-NLEPLKLSYLSGVEAMSLMQGSV 620 (996)
Q Consensus 575 ~~~lp~~~~gsrIIITTR~~~----------~~-~~~~~~v~~L~~~EA~~Lf~~~a 620 (996)
..++.. .+.++|.+|.... +. ....+.++.++.++..+++....
T Consensus 308 ~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 308 KPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp SSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 233322 2456666665321 11 12579999999999999988654
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.09 E-value=0.0055 Score=66.17 Aligned_cols=146 Identities=16% Similarity=0.277 Sum_probs=79.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|+|+|++|+||||||+.++.... .+.+.+++. . +.... .. .....+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~------~---~~~~~---~~---------------~~~~~i~~~~ 125 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS------D---FVEMF---VG---------------VGAARVRDLF 125 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH------H---HHHST---TT---------------HHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC---CCEEEecHH------H---HHHHH---hh---------------HHHHHHHHHH
Confidence 89999999999999999998765 234444311 1 11100 00 0112233333
Q ss_pred HHHhcCCCEEEEEcCCCCccccc----------chHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW----------DDKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~----------~~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
+......+.++|+||++...... ....+..++ ... .....++.||..+... .. ..+
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i 205 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEE
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEE
Confidence 33323567899999997431000 001222232 111 1123445566665542 12 578
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
+++..+.++-.+++..++...+.........++..+.|..
T Consensus 206 ~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred EeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 9999999998899887765333111111345677777655
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.09 E-value=0.0043 Score=64.81 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|...|++++|.+++++++.+.++..|+++|....+..+||.++...|+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 3577889999999999999999999999999999999999999999999999999888765
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.08 E-value=0.0058 Score=64.89 Aligned_cols=146 Identities=16% Similarity=0.283 Sum_probs=77.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
++|+|++|+||||||+.++.... .+.+.+++. . +.... .. .....+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~------~---~~~~~---~~---------------~~~~~i~~~~ 101 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS------D---FVEMF---VG---------------VGAARVRDLF 101 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH------H---HHHSC---TT---------------HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHH------H---HHHHH---hh---------------HHHHHHHHHH
Confidence 89999999999999999998765 233444311 1 11100 00 1112233333
Q ss_pred HHHhcCCCEEEEEcCCCCccccc-------c---hHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW-------D---DKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~-------~---~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
+......+.++|+||++...... . ...+..++ ... .....++.||.++... .. ..+
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i 181 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEE
T ss_pred HHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEE
Confidence 33323457899999997531100 0 01122222 111 1123444455555441 12 578
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT 642 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP 642 (996)
+++..+.++-.+++..++...+.........+++.+.|.-
T Consensus 182 ~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp ECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred eeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 9999999988889887765333111111345677776654
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.002 Score=70.93 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh---cCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH---QRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~---~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (996)
+...++|++|+||||+|+.+++... ..+..+.+++...... .. +.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~-------------------------------~i-d~ 66 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENI-------------------------------GI-DD 66 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCB-------------------------------CH-HH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCC-------------------------------CH-HH
Confidence 4689999999999999999988532 1122344554321100 01 11
Q ss_pred HHHHHHHHh----cCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC-cCC---cceEEccCCCHHHHH
Q 001919 542 ICRVRKELM----RNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR-VMN---LEPLKLSYLSGVEAM 613 (996)
Q Consensus 542 ~~~l~~~L~----~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~-~~~---~~~~~v~~L~~~EA~ 613 (996)
+..+.+.+. .+++-++|+|+++....- ..+.|.+++....+.+.+|++|.++. +.. .+++++++++.++..
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~ 145 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFR 145 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHH
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHH
Confidence 122233331 245678999999986321 11345555544445788888775543 311 138999999999999
Q ss_pred HHHhhhc
Q 001919 614 SLMQGSV 620 (996)
Q Consensus 614 ~Lf~~~a 620 (996)
+.+...+
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888776
No 82
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.06 E-value=0.0051 Score=72.16 Aligned_cols=153 Identities=16% Similarity=0.259 Sum_probs=84.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRV 545 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 545 (996)
-|.|+|++|+|||+||+.++++... ..+.+++. .+...+ .+ ........+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~---~fv~vn~~---------~l~~~~---~g---------------~~~~~~~~~ 289 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGA---FFFLINGP---------EIMSKL---AG---------------ESESNLRKA 289 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS---EEEEEEHH---------HHHTSC---TT---------------HHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCC---CEEEEEch---------Hhhhhh---cc---------------hhHHHHHHH
Confidence 4899999999999999999887632 23444321 111110 00 111122222
Q ss_pred HHHHhcCCCEEEEEcCCCCcccc-------cch---HHHhhhccC--CCCCeEEEEEecCCC-c----C---Cc-ceEEc
Q 001919 546 RKELMRNIPFLVIIDNLESEKDW-------WDD---KLVMDLLPR--FGGETHIIISTRLPR-V----M---NL-EPLKL 604 (996)
Q Consensus 546 ~~~L~~~~r~LLVLDdvd~~~~~-------~~~---~~L~~~lp~--~~~gsrIIITTR~~~-~----~---~~-~~~~v 604 (996)
.......++.+|+||+++.+..- ... ..|..++.. ...+..||.||.... + . .. ..+.+
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEEC
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEe
Confidence 22223677899999999643110 000 122223321 122456666666542 2 1 12 47899
Q ss_pred cCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCC-hHHHHHH
Q 001919 605 SYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRL-TMGLAVV 648 (996)
Q Consensus 605 ~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lggl-PLAL~~~ 648 (996)
+.++.++-.++|..++...+........++++.+.|. +-.|..+
T Consensus 370 ~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence 9999999999999988644322221245677777664 4444443
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.0023 Score=79.39 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=81.5
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC------C-EEEEEeCcC
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY------K-MVLWVGGES 502 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F------~-~v~wi~~~~ 502 (996)
+-..++||+.+++++.. .+.+. ...-|.|+|++|+|||++|+.+++.+.... . .++.+++
T Consensus 178 ~ld~iiG~~~~i~~l~~------~l~~~-----~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIE------VLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHH------HHHCS-----SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCCccCchHHHHHHHH------HHhCC-----CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence 34569999999999874 11111 112378999999999999999999874321 1 1222211
Q ss_pred ccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCC
Q 001919 503 RYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFG 582 (996)
Q Consensus 503 ~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~ 582 (996)
+.... ......+..+.+.+...++.+|++|...+. ...|...+..
T Consensus 245 --------------g~~~~--------------G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~-----~~~L~~~l~~-- 289 (758)
T 3pxi_A 245 --------------GTKYR--------------GEFEDRLKKVMDEIRQAGNIILFIDAAIDA-----SNILKPSLAR-- 289 (758)
T ss_dssp ------------------------------------CTTHHHHHHHHHTCCCCEEEECC-------------CCCTTS--
T ss_pred --------------ccccc--------------chHHHHHHHHHHHHHhcCCEEEEEcCchhH-----HHHHHHHHhc--
Confidence 00000 011112333334443577899999922111 0223333332
Q ss_pred CCeEEEEEecCCCc------C-----CcceEEccCCCHHHHHHHHhhhcC
Q 001919 583 GETHIIISTRLPRV------M-----NLEPLKLSYLSGVEAMSLMQGSVK 621 (996)
Q Consensus 583 ~gsrIIITTR~~~~------~-----~~~~~~v~~L~~~EA~~Lf~~~a~ 621 (996)
+..++|.||..... . ....+.++.++.++..++|.....
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 24667777665552 1 126799999999999999997654
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.0005 Score=67.42 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..++|+|+.|.|||||++.++..+...-..+++++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 369999999999999999999977643222667754
No 85
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.0011 Score=72.71 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
..+.|+|++|+|||++|+.++..+...-...+.+++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 36899999999999999999998755444456666543
No 86
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.94 E-value=0.0023 Score=65.35 Aligned_cols=131 Identities=21% Similarity=0.085 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCccc--C-CcccccchhhhcHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIEN--C-SDKSRIKSFEEQEEAA 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~--~-~~~~~~~~~~~~~~~~ 541 (996)
+.|.|++-.|.||||+|...+.|...+--.++++.........+-..+...|++...... . ................
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 357777777799999999999987776556777754331111111223344432211100 0 0000000000112234
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCc--ccccchHHHhhhccCCCCCeEEEEEecCCC
Q 001919 542 ICRVRKELMRNIPFLVIIDNLESE--KDWWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~~--~~~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
...+++.+..++-=|||||.+... -.+.+.+.+.+++........||||+|+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 455555653344459999999542 112244667777755445899999999964
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.94 E-value=0.00052 Score=75.73 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~ 499 (996)
.+.|+|++|+|||+||..+++... .....+.++.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 588999999999999999999877 5544566664
No 88
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.84 E-value=0.069 Score=59.24 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=34.1
Q ss_pred eEEccCCCHHHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHH
Q 001919 601 PLKLSYLSGVEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMG 644 (996)
Q Consensus 601 ~~~v~~L~~~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLA 644 (996)
.+.+++++.++-.+++...+.... .-+.+.+..|++.+.|.|-.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHH
Confidence 588999999999999988764211 23456788999999999854
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.82 E-value=0.0029 Score=65.80 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCccccc-chh-hh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRI-KSF-EE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~-~~~-~~ 536 (996)
.+++|.|++|.|||||++.++..... ....++|++.........+..+.+.+++..... .+.-.. ... ..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 103 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEV--LKHIYVARAFNSN 103 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHH--HHTEEEEECCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHH--hhcEEEEecCChH
Confidence 48999999999999999999875443 234688988765311223334444444321100 000000 000 01
Q ss_pred cHHHHHHHHHHHHh-----cCCCEEEEEcCCCC
Q 001919 537 QEEAAICRVRKELM-----RNIPFLVIIDNLES 564 (996)
Q Consensus 537 ~~~~~~~~l~~~L~-----~~~r~LLVLDdvd~ 564 (996)
........+...+. ..++-+||||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11222344444443 45777999999875
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.01 Score=69.67 Aligned_cols=169 Identities=18% Similarity=0.270 Sum_probs=90.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.|+|++|+|||+||+.++.... ...+.+++..- ..... ......+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~------------~~~~~------------------g~~~~~v~ 113 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF------------VEMFV------------------GVGAARVR 113 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGG------------TSSCT------------------THHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHH------------HHhhh------------------hhHHHHHH
Confidence 89999999999999999998764 23445543210 00000 01122233
Q ss_pred HHHh---cCCCEEEEEcCCCCcccccc----------hHHHhhhc---cCC--CCCeEEEEEecCCCcC--------Cc-
Q 001919 547 KELM---RNIPFLVIIDNLESEKDWWD----------DKLVMDLL---PRF--GGETHIIISTRLPRVM--------NL- 599 (996)
Q Consensus 547 ~~L~---~~~r~LLVLDdvd~~~~~~~----------~~~L~~~l---p~~--~~gsrIIITTR~~~~~--------~~- 599 (996)
..+. ...+.++++|+++....-.. ...+..++ ..+ .....||.||..+... ..
T Consensus 114 ~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfd 193 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 193 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSC
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccc
Confidence 3332 23458999999986421000 01222332 211 1133455555554431 12
Q ss_pred ceEEccCCCHHHHHHHHhhhcCCCCcccHHHHHHHHHHhCCCh-HHH----HHHHHHH-hc--CCCCHHHHHHHHhc
Q 001919 600 EPLKLSYLSGVEAMSLMQGSVKDYPITEVDALRVIEEKVGRLT-MGL----AVVGAIL-SE--LPINPSRLLDTINR 668 (996)
Q Consensus 600 ~~~~v~~L~~~EA~~Lf~~~a~~~~~~~~~~a~~iv~~lgglP-LAL----~~~gs~L-~~--~~~s~~e~l~~L~~ 668 (996)
..+.|+..+.++-.++|..++...+.........|+..+.|.. --| ..++.+- +. ..++.+++.+.+.+
T Consensus 194 r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 5789999999999999988775332111111345777777765 222 2222221 11 23677777776665
No 91
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.73 E-value=0.00051 Score=73.76 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
|.|+|++|+|||+||+.++++....|
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 77999999999999999999875543
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.007 Score=62.73 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+++|.|.+|.|||||++.++......-..++|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 37999999999999999999976654334577776544
No 93
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0048 Score=64.69 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCccccc-chh-h
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRI-KSF-E 535 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~-~~~-~ 535 (996)
.+++|.|++|.|||||++.++..... .-..++|++.... .. ..+..+.+.++....... +...+ ... .
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~-~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~ 101 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP-ERLLAVAERYGLSGSDVL--DNVAYARAFNT 101 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH-HHHHHHHHHTTCCHHHHH--HTEEEEECCSH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCH-HHHHHHHHHcCCCHHHHh--hCeEEEecCCH
Confidence 38999999999999999999986432 2358999987763 22 223334444544321000 00000 000 0
Q ss_pred hcHHHHHHHHHHHHhcCCCEEEEEcCCCCc
Q 001919 536 EQEEAAICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 536 ~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.........+.+.+...+.-+||||.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 112233444566664567789999998864
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.62 E-value=0.0056 Score=68.64 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|++|+||||||.+++......-..++|++.... ... .++.++....... + ....+.++...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~------i-~~~~~~e~~l~ 129 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLL------I-SQPDHGEQALE 129 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCE------E-ECCSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-----HHHHcCCchhhhh------h-hhccCHHHHHH
Confidence 489999999999999999999887655456789987654 322 4556665432110 0 00123445555
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+...+...+.-++|+|.+...
T Consensus 130 ~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 130 IVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHHHTSCCSEEEEECTTTC
T ss_pred HHHHHhhhcCCCeEEehHhhhh
Confidence 5655554456679999998754
No 95
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.015 Score=62.73 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=71.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
++|+|++|.||||||+.++..... ..+.+++..- .... .......+..+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~~l------------~~~~---------------~~~~~~~i~~vf 96 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKGPEL------------LNMY---------------VGESERAVRQVF 96 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETTTT------------CSST---------------THHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcHHH------------Hhhh---------------hhHHHHHHHHHH
Confidence 899999999999999999987543 3555643211 0000 001112233333
Q ss_pred HHHhcCCCEEEEEcCCCCccccc-------chHHHhhhc---cC--CCCCeEEEEEecCCCcC--------Cc-ceEEcc
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW-------DDKLVMDLL---PR--FGGETHIIISTRLPRVM--------NL-EPLKLS 605 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~-------~~~~L~~~l---p~--~~~gsrIIITTR~~~~~--------~~-~~~~v~ 605 (996)
+......+.++++|+++...... ....+..++ .. .....-++.+|..+.+. .. ..+.++
T Consensus 97 ~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~ 176 (274)
T 2x8a_A 97 QRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVG 176 (274)
T ss_dssp HHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECC
T ss_pred HHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeC
Confidence 33324578899999998642100 001112222 11 11234556667666552 22 578899
Q ss_pred CCCHHHHHHHHhhhcC
Q 001919 606 YLSGVEAMSLMQGSVK 621 (996)
Q Consensus 606 ~L~~~EA~~Lf~~~a~ 621 (996)
..+.++-.++|..+..
T Consensus 177 ~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 177 LPPPADRLAILKTITK 192 (274)
T ss_dssp SCCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999987764
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.61 E-value=0.0031 Score=65.07 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+++|.|.+|+|||||+..++. ..-..++|++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 3799999999999999999988 2235788998776
No 97
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.53 E-value=0.001 Score=64.52 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=29.5
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHH
Q 001919 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.++|++..++++.+. +... .....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~------~~~~---~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNRE------VEAA---AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHH------HHHH---HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHH------HHHH---hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578888888877631 1000 0011238899999999999999887653
No 98
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.023 Score=60.32 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|...|++++|.+++++++.+.++..|+++|....+..+||.++...|+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 3567889999999999999999999999999999999999999999999999999888764
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.46 E-value=0.0012 Score=69.14 Aligned_cols=116 Identities=17% Similarity=0.045 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.++.|+|..|.||||++..+++++..+-..++.+...-.. . +...++..+++...... + ....+....
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~~~i~srlG~~~~~~~------~----~~~~~i~~~ 80 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SIRNIQSRTGTSLPSVE------V----ESAPEILNY 80 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GCSSCCCCCCCSSCCEE------E----SSTHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HHHHHHHhcCCCccccc------c----CCHHHHHHH
Confidence 4899999999999999999999987765445555322111 1 22233344443321110 0 122334444
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
+.+.+...+.-+||+|.+.....- ..+.+..+.. .|..||+|-++...
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~~~-~ve~l~~L~~---~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFDDR-ICEVANILAE---NGFVVIISGLDKNF 128 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSCTH-HHHHHHHHHH---TTCEEEEECCSBCT
T ss_pred HHHHhhCCCCCEEEEecCccCcHH-HHHHHHHHHh---CCCeEEEEeccccc
Confidence 444332234459999999764210 0023333333 26889999987543
No 100
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.45 E-value=0.0077 Score=66.01 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=57.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC--CCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH-
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQR--YKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA- 541 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~--F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 541 (996)
++.|.|++|+||||||.+++...... -..++||+.+.. ... .++.+++...... .. ...+.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~ll---v~----~~~~~E~~~ 97 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVI---HT----PVQSLEQLR 97 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEE---EE----ECSBHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeE---EE----cCCCHHHHH
Confidence 68999999999999999999877655 357899987765 432 3667776543210 00 01133343
Q ss_pred HHHHHHH--HhcCCCEEEEEcCCCCc
Q 001919 542 ICRVRKE--LMRNIPFLVIIDNLESE 565 (996)
Q Consensus 542 ~~~l~~~--L~~~~r~LLVLDdvd~~ 565 (996)
...+... ++..+.-|||+|-+..+
T Consensus 98 l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 98 IDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHHHHhhccCceEEEEeccccc
Confidence 3333222 34567889999999865
No 101
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.022 Score=60.53 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+..+.++.++|.+|...|++++|.+++++++++.++..|.++|....+..+||.++...++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 169 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 33567889999999999999999999999999999999999999999999999999777654
No 102
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.37 E-value=0.016 Score=69.02 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.+++|+|++|+||||||+.++......|
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 3799999999999999999998875433
No 103
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.35 E-value=0.0027 Score=68.01 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=36.1
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.|+|.+..++++.+ .+... .....-|.|+|.+|+|||+||+.+++.....-...+.+++..
T Consensus 7 ~~ig~~~~~~~~~~------~~~~~---~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 7 NLLGEANSFLEVLE------QVSHL---APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp ---CCCHHHHHHHH------HHHHH---TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred cceeCCHHHHHHHH------HHHHH---hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 46788777776552 00000 001124889999999999999999886543322355666554
No 104
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.31 E-value=0.0081 Score=66.55 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC------CCEEEEEeCcCc-cHHHHHHHHHHHccCccCccc-CCcccccchhhh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR------YKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIEN-CSDKSRIKSFEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~------F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~-~~~~~~~~~~~~ 536 (996)
.++.|+|.+|+||||||.+++...... -..++|++.+.. ... .+..+++.++....... .-......+. +
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~-~l~~~~~~~g~~~~~~~~~l~~~~~~~~-~ 185 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE-RIENMAKALGLDIDNVMNNIYYIRAINT-D 185 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTCCHHHHHHTEEEEECCSH-H
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH-HHHHHHHHhCCCHHHHhccEEEEeCCCH-H
Confidence 489999999999999999999875433 357899987764 332 33344555554321000 0000000000 1
Q ss_pred cHHHHHHHHHHHHhc-CCCEEEEEcCCCCc
Q 001919 537 QEEAAICRVRKELMR-NIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~ 565 (996)
...+.+..+...+.. .+.-|||+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 122345566666644 66779999999754
No 105
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.31 E-value=0.023 Score=62.27 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=37.4
Q ss_pred hccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 433 EMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 433 ~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++|+...++++.+ .+... .....-|.|+|.+|+|||++|+.+++.....-...+.+++..
T Consensus 3 ~iig~s~~~~~~~~------~~~~~---a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 3 HMIGSSPAMQHLLN------EIAMV---APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CCCCCSHHHHHHHH------HHHHH---CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CcEECCHHHHHHHH------HHHHH---hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 46788777777653 11000 011224889999999999999999885432222334565543
No 106
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.29 E-value=0.022 Score=53.31 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.++.++|.+|..+|+|++|.+.+++++++.... ..+|+....++.+||.++...++.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCH
Confidence 5678899999999999999999999999987654 567888888999999998877654
No 107
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.23 E-value=0.012 Score=66.01 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|.+|+||||||.+++......-..++|++.+.. ... .++.++....... +.. ..+.++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~------i~~-~~~~e~~l~ 129 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLL------VSQ-PDTGEQALE 129 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCE------EEC-CSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeE------Eec-CCCHHHHHH
Confidence 489999999999999999999877655557889987754 321 2455665432110 000 013344444
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+.......+.-+||+|.+...
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGGGC
T ss_pred HHHHHHhcCCCCEEEEcChHhh
Confidence 4444443455679999998765
No 108
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.23 E-value=0.017 Score=71.95 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=86.6
Q ss_pred chhccccchHhhhhhhhcC---CCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHH
Q 001919 431 EIEMQSTEAPQRQKTKSSG---RYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQ 507 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~---~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~ 507 (996)
-..++|.+..++++.+... .+..+...-. ......|+|+|++|+||||||+.++..+...| +.+++.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGP------ 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSC-CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEch------
Confidence 3468888888888764110 0111111000 11223599999999999999999988754332 444311
Q ss_pred HHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHHHHHhcCCCEEEEEcCCCCccccc-------ch---HHHhhh
Q 001919 508 NYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVRKELMRNIPFLVIIDNLESEKDWW-------DD---KLVMDL 577 (996)
Q Consensus 508 ~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~~~~-------~~---~~L~~~ 577 (996)
....... ......+..+.+......+.+|++|+++....-. .. ..+..+
T Consensus 273 ------~l~~~~~---------------g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~l 331 (806)
T 1ypw_A 273 ------EIMSKLA---------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL 331 (806)
T ss_dssp ------HHSSSST---------------THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHH
T ss_pred ------Hhhhhhh---------------hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHH
Confidence 1111100 0122233333333335678999999997542100 00 122233
Q ss_pred ccCC--CCCeEEEEEecCCCc-----C---Cc-ceEEccCCCHHHHHHHHhhhcCC
Q 001919 578 LPRF--GGETHIIISTRLPRV-----M---NL-EPLKLSYLSGVEAMSLMQGSVKD 622 (996)
Q Consensus 578 lp~~--~~gsrIIITTR~~~~-----~---~~-~~~~v~~L~~~EA~~Lf~~~a~~ 622 (996)
+... ..+..||.||.+... . .. ..+.+..++.++-.+++..++..
T Consensus 332 l~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp HHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred hhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 3221 124556666665432 1 12 46788899999999999887763
No 109
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.20 E-value=0.062 Score=62.34 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=50.7
Q ss_pred EEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEe---------cC----C-Cc-----CCcceEEccCCCHHHHHHHH
Q 001919 556 LVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIIST---------RL----P-RV-----MNLEPLKLSYLSGVEAMSLM 616 (996)
Q Consensus 556 LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITT---------R~----~-~~-----~~~~~~~v~~L~~~EA~~Lf 616 (996)
++|+|+++.+..- ..+.|.+.+...... .+|+.| .+ + .+ ..+..+.+++++.+|..+++
T Consensus 298 VliIDEa~~l~~~-a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 298 VLFVDEVHMLDIE-CFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp EEEEESGGGCBHH-HHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred EEEEechhhcCHH-HHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 8899999986321 113333444332223 344344 21 1 11 22357899999999999999
Q ss_pred hhhcCC-CCcccHHHHHHHHHHh-CCChH
Q 001919 617 QGSVKD-YPITEVDALRVIEEKV-GRLTM 643 (996)
Q Consensus 617 ~~~a~~-~~~~~~~~a~~iv~~l-gglPL 643 (996)
...+.. ...-..+.+..|++.+ +|-|-
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r 404 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLR 404 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHH
Confidence 887641 1112445677888887 67765
No 110
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.13 E-value=0.004 Score=76.80 Aligned_cols=144 Identities=18% Similarity=0.326 Sum_probs=69.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICRVR 546 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (996)
|.++|++|.|||.||+++++..... |+... .. ..+..-.+ ..+..+..+.
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~-----f~~v~---~~-------~l~s~~vG---------------ese~~vr~lF 563 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQAN-----FISIK---GP-------ELLTMWFG---------------ESEANVREIF 563 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCE-----EEECC---HH-------HHHTTTCS---------------SCHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHHhCCc-----eEEec---cc-------hhhccccc---------------hHHHHHHHHH
Confidence 7899999999999999999876432 23211 11 11211111 1223455555
Q ss_pred HHHhcCCCEEEEEcCCCCccccc----------chHHHhhhc---cCCC--CCeEEEEEecCCCcC--------Cc-ceE
Q 001919 547 KELMRNIPFLVIIDNLESEKDWW----------DDKLVMDLL---PRFG--GETHIIISTRLPRVM--------NL-EPL 602 (996)
Q Consensus 547 ~~L~~~~r~LLVLDdvd~~~~~~----------~~~~L~~~l---p~~~--~gsrIIITTR~~~~~--------~~-~~~ 602 (996)
+.-+...+++|+||++|..-.-- ....+..+| .... .+.-||-||..+... .. ..+
T Consensus 564 ~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE
T ss_pred HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEE
Confidence 55546789999999999752100 001223333 2111 233344455544431 22 678
Q ss_pred EccCCCHHHHHHHHhhhcCCCCcc-cHHHHHHHHHHhCCC
Q 001919 603 KLSYLSGVEAMSLMQGSVKDYPIT-EVDALRVIEEKVGRL 641 (996)
Q Consensus 603 ~v~~L~~~EA~~Lf~~~a~~~~~~-~~~~a~~iv~~lggl 641 (996)
.++..+.++-.++|..+..+.+.. +.+ ...|++.+.|+
T Consensus 644 ~v~lPd~~~R~~il~~~l~~~~~~~~~d-l~~la~~t~g~ 682 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGF 682 (806)
T ss_dssp EC-----CHHHHTTTTTSSCC--CCC--------------
T ss_pred EECCcCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHhCCCC
Confidence 899888888889998887654422 222 34566655554
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.13 E-value=0.0048 Score=64.91 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~~ 502 (996)
.+++|.|++|.|||||++.++.... ..-..+.++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4899999999999999999985332 3334556665543
No 112
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.12 E-value=0.023 Score=63.41 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcc-cCCcccccchhhh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIE-NCSDKSRIKSFEE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~-~~~~~~~~~~~~~ 536 (996)
.++.|+|.+|+||||||..++..... .-..++|++.+.. ... .+..++..++...... .........+. +
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~-~l~~~~~~~g~~~~~~l~~l~~~~~~~~-e 200 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD-RLRDIADRFNVDHDAVLDNVLYARAYTS-E 200 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH-HHHHHHHHTTCCHHHHHHTEEEEECCST-T
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH-HHHHHHHHcCCCHHHHHhceeEeecCCH-H
Confidence 58999999999999999999987433 2357899988764 332 3334455555432100 00000000000 1
Q ss_pred cHHHHHHHHHHHHhc--CCCEEEEEcCCCCc
Q 001919 537 QEEAAICRVRKELMR--NIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~--~~r~LLVLDdvd~~ 565 (996)
...+.+..+.+.+.. .+.-|||+|.+...
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 222344455566644 56679999998764
No 113
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.10 E-value=0.017 Score=65.00 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|.+|+||||||.+++......-..++|++.+.. ... .+..++....... +.. ..+.++...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~------i~~-~~~~e~~l~ 142 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELL------VSQ-PDNGEQALE 142 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCE------EEC-CSSHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHce------eec-CCcHHHHHH
Confidence 479999999999999999999887655557899987754 321 2445555422100 000 013445555
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+...++....-+||+|.+...
T Consensus 143 ~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 143 IMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHHHHTTTCCSEEEEECTTTC
T ss_pred HHHHHHhcCCCCEEEEeChHHh
Confidence 5555553455669999998765
No 114
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.08 E-value=0.0044 Score=68.16 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
+++.|+|++|+|||+||.++++. . .. .+.|++.... . +.... .+.+....
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~-G~-~VlyIs~~~eE~-----------v~~~~---------------~~le~~l~ 174 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-L-GG-KDKYATVRFGEP-----------LSGYN---------------TDFNVFVD 174 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-H-HT-TSCCEEEEBSCS-----------STTCB---------------CCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-C-CC-CEEEEEecchhh-----------hhhhh---------------cCHHHHHH
Confidence 46889999999999999999987 1 11 3456654111 1 00000 13445566
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+.+.+ ...+ |||+|++...
T Consensus 175 ~i~~~l-~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 175 DIARAM-LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHH-HHCS-EEEEECCTTT
T ss_pred HHHHHH-hhCC-EEEEeccccc
Confidence 677777 3344 9999999875
No 115
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.04 E-value=0.031 Score=60.59 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
-+.|+|++|+|||+||+.+++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999988743
No 116
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.02 E-value=0.018 Score=64.66 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|.+|+||||||.+++......-..++|++.+.. ... .+..++....... +.. ..+..+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~------i~~-~~~~e~~~~ 131 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLL------CSQ-PDTGEQALE 131 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCE------EEC-CSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH-----HHHHcCCChhhee------eeC-CCCHHHHHH
Confidence 489999999999999999999887665557899987654 321 2445554321100 000 012334444
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+....+..+.-+||+|.+...
T Consensus 132 ~~~~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 132 ICDALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHHHHTCCSEEEEECGGGC
T ss_pred HHHHHHhccCCCEEEEcCHHHh
Confidence 4444333456679999998754
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.86 E-value=0.017 Score=65.94 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc------CCCEEEEEeCcCccHHHHHHHHHHHccCccCccc-CCcccccchhhhc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ------RYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIEN-CSDKSRIKSFEEQ 537 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~------~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~-~~~~~~~~~~~~~ 537 (996)
.++.|.|.+|+|||||++.++..... .-..++|++.........+..+++.+++...... .......... ..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~-~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA-DH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH-HH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh-HH
Confidence 48999999999999999988754332 2346899987654112234445666665321000 0000000000 11
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCc
Q 001919 538 EEAAICRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ~~~~~~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
..+.+..+.+.+...+.-|||+|.+...
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 2234445555554567789999997653
No 118
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.86 E-value=0.019 Score=65.71 Aligned_cols=58 Identities=7% Similarity=-0.097 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
.+.+++|+|.+|..+|++++|..++++++++.+...++.|++...+..++|.++...+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG 150 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999999999999999988888778888888775554
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.79 E-value=0.017 Score=60.55 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+++|.|.+|+||||||.+++......-..++|++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 37999999999999999999887665555788887654
No 120
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.75 E-value=0.13 Score=48.08 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+++++++++.++. .+++....+..+||.++...|+.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCH
Confidence 46678899999999999999999999999997765 35778888999999999887764
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.74 E-value=0.043 Score=54.43 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+++++++++.++ .|.+++....+..+||.++...|+.
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCH
Confidence 5678899999999999999999999999999874 4555558888999999999888765
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.69 E-value=0.046 Score=53.24 Aligned_cols=28 Identities=7% Similarity=-0.130 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001919 934 VLETRAKLMLRGGQFDMGDDLIRKAVFI 961 (996)
Q Consensus 934 ~l~~La~~y~~~Gr~~eAe~l~~~aL~i 961 (996)
++.++|.+|...|++++|...|++++++
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555555555555555553
No 123
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.67 E-value=0.016 Score=64.05 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--c---------CC-----CEEEEEeCcCc-cHHHHHHHHHHHccCccCcc-cCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH--Q---------RY-----KMVLWVGGESR-YIRQNYLNLWSFLDVDVGIE-NCS 526 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~---------~F-----~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~-~~~ 526 (996)
.++.|+|.+|+|||+||.+++.... . .. ..++|++.+.. ... .+...++.++...... ..-
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~-~l~~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE-RIMQMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH-HHHHHHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhcCE
Confidence 5899999999999999999998632 1 11 47899987764 332 3334445555432100 000
Q ss_pred cccccchhhhcHHHHHHHHHHHHhc-CCCEEEEEcCCCCc
Q 001919 527 DKSRIKSFEEQEEAAICRVRKELMR-NIPFLVIIDNLESE 565 (996)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~L~~-~~r~LLVLDdvd~~ 565 (996)
......+. +...+.+..+.+.+.. .+.-|||+|.+...
T Consensus 178 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 178 FVARAYNS-DMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp EEEECSSH-HHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred EEEeCCCH-HHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 00000000 1122345556666644 55679999999754
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.66 E-value=0.025 Score=52.91 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
....++.++|.+|..+|++++|.+.|++++++ .|++++.. .+|+.++|
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~---~~l~~~lr 126 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEAR---EGVRNCLR 126 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHCC
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHH---HHHHHhcC
Confidence 34567899999999999999999999999996 57777755 77777653
No 125
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.61 E-value=0.0067 Score=75.24 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+.|+|++|+|||+||+.+++.....-...+.+++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 59999999999999999999987554444556654
No 126
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.61 E-value=0.04 Score=60.46 Aligned_cols=90 Identities=19% Similarity=0.082 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHH-
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAA- 541 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~- 541 (996)
.+|+|+|++|+||||++..++..+...-..+.+++++.. ...+.+..++..+++..-.... ..+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s---------~~~~~~v~ 175 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE---------GADPAAVA 175 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST---------TCCHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCC---------ccCHHHHH
Confidence 589999999999999999999988765556777776543 2233444455555544311100 0122222
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCC
Q 001919 542 ICRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 542 ~~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
...+...+ ....-++|+|-.-.
T Consensus 176 ~~al~~a~-~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 176 FDAVAHAL-ARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHH-HTTCSEEEEEECCC
T ss_pred HHHHHHHH-hcCCCEEEEECCCc
Confidence 23444445 44555788886643
No 127
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.60 E-value=0.045 Score=62.93 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCcc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDV 520 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~ 520 (996)
..+|+|+|.+|+||||++..++..+..+-..+..+.++.. ...+.+..++...+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 3589999999999999999999988776556777777654 34455556666666643
No 128
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.0081 Score=68.81 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGE-DHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~-dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.++++++||.+|..+|++++|.+.|++|+++.+...+. .||..+.+.+|||.++...|+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 46788999999999999999999999999998876654 5899999999999999888764
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.50 E-value=0.02 Score=53.64 Aligned_cols=54 Identities=7% Similarity=-0.029 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
...|.+..+||..|..+|+|++|.+.|.+++++ .|+++ .+.+|+|.++...++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~---~~~~nlg~~~~~~~~~ 58 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI---TFYNNKAAVYFEEKKF 58 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHhHHHHHHHhhhH
Confidence 346788899999999999999999999999986 34454 4569999999877764
No 130
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.45 E-value=0.017 Score=71.17 Aligned_cols=109 Identities=12% Similarity=0.057 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh-hcccccccccccccCchhHHH---hhHhHHHHHHHHHHHHHhcCC
Q 001919 872 FSRCSAALELLRLCTNALEAADHALVTPVEKLLD-KSLCWRPVQTNAQLNPSLWQE---LALTRATVLETRAKLMLRGGQ 947 (996)
Q Consensus 872 ~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~-~~l~~~~g~~~e~~~~~l~~~---l~~~~A~~l~~La~~y~~~Gr 947 (996)
.|.+...++.+..|...++++.+........|.. +..+...+++.++... |+. +.+..+.++++||.+|..+|+
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~--~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC--YTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444555556666666666665544443333322 2223334555554221 221 244556778888888888888
Q ss_pred chHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 948 FDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 948 ~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+++|++.|++++++ .+++++.. .|||.++...++.
T Consensus 127 ~~eAi~~~~~Al~l-----~P~~~~a~---~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 127 IPEAIASYRTALKL-----KPDFPDAY---CNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHHHHHHH-----CSCCHHHH---HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh-----CCCChHHH---hhhhhHHHhcccH
Confidence 88888888888875 46666654 8888888777664
No 131
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.43 E-value=0.028 Score=69.65 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
+.+.|+|++|+|||+||+.+++.+. ...+.+++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~ 521 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDM 521 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc---CCEEEEec
Confidence 3589999999999999999998873 33445554
No 132
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.056 Score=59.54 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++.|.|.+|+||||||..++.....+-..++|++.+.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 48999999999999999999987665557889998764
No 133
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.049 Score=58.68 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC----------CCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR----------YKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~----------F~~v~wi~~~~~ 503 (996)
.+++|.|.+|.|||||++.++..+... -..++|+.....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 489999999999999999999866542 235677876643
No 134
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.22 E-value=0.1 Score=48.70 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+++++++++.+.. .+++....+..++|.++...++.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 105 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDY 105 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhH
Confidence 46788999999999999999999999999998765 55677788899999999877654
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.22 E-value=0.039 Score=61.72 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC--C----CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccc-hh-hh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR--Y----KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIK-SF-EE 536 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~--F----~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~-~~-~~ 536 (996)
.+++|+|++|+|||||++.++...... . ..++|++.........+..+++.+++..... .+...+. .+ ..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v--~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEV--LKHIYVARAFNSN 209 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHH--GGGEEEEECCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHH--hhCEEEEecCChH
Confidence 589999999999999999999876322 1 2458998765411233444455444321100 0000000 00 01
Q ss_pred cHHHHHHHHHHHHhc-----CCCEEEEEcCCCCc
Q 001919 537 QEEAAICRVRKELMR-----NIPFLVIIDNLESE 565 (996)
Q Consensus 537 ~~~~~~~~l~~~L~~-----~~r~LLVLDdvd~~ 565 (996)
.....+..+...+.. .++-|||||.+...
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 123344455555533 57789999998764
No 136
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.17 E-value=0.068 Score=59.06 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|++++++++++.++.-+++||....++.+||.++...|+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 466788999999999999999999999999999988888899999999999999877764
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.15 E-value=0.099 Score=57.89 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHcc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLD 517 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~ 517 (996)
.+++|+|+.|+||||+++.++..+...--.+.+...... ...+.+..+++.++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 489999999999999999999877654434555544322 33333444444444
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.13 E-value=0.084 Score=64.92 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=46.0
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+..+.++.+||.+|..+|++++|++.|++++++ .+++++ +.+|||.++...|+.
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~---a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFAD---AHSNLASIHKDSGNI 127 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCH
Confidence 4556788999999999999999999999999986 456655 459999999888764
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.12 E-value=0.05 Score=62.52 Aligned_cols=56 Identities=27% Similarity=0.235 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
..+|+|+|++|+||||++..++..+..+-..+..+.++.. ...+.+..++..++++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 3589999999999999999999988766556777776643 3344455555655554
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.07 E-value=0.097 Score=51.58 Aligned_cols=59 Identities=17% Similarity=-0.047 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHH----HHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAAR----ETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~----~nLA~~~r~~~~~ 990 (996)
.+.++.|+|.++..+|+|++|.+.|.++|++..+. |+-+|+-..+. +|+|.++...++.
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~ 118 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRG 118 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence 45689999999999999999999999999985544 35566676677 9999999887764
No 141
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.07 E-value=0.058 Score=58.87 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
.+|+|+|.+|+||||++..++..+.. .-..+.+++.+.. ...+.+...+..++++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCC
Confidence 48999999999999999999998764 4446777876653 4444555555555543
No 142
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.06 E-value=0.081 Score=57.76 Aligned_cols=92 Identities=21% Similarity=0.167 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
.+++|+|.+|+||||++..++..+...-..+.+++++.. .....+..++...+++.-.... ..++.+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~---------~~~p~~~~ 169 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPG---------EKDVVGIA 169 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTT---------CCCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCC---------CCCHHHHH
Confidence 479999999999999999999988766566888887754 2333444555555554321100 01344444
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCc
Q 001919 543 CRVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 543 ~~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
....+.+....-=++|+|-.-..
T Consensus 170 ~~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 170 KRGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCc
Confidence 34444442244447888876543
No 143
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.02 E-value=0.1 Score=56.64 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.+.++.++|.+|.. |++++|.++|++++++.... .+++....+++|||.++...|+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCC
Confidence 35566677777766 77777777777777766542 2233445566667666665554
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.01 E-value=0.1 Score=50.11 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
..++.++|.+|...|++++|.+.|++++++. +++|+..
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 126 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFX 126 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcch
Confidence 4567788888888888888888888888763 4555544
No 145
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.00 E-value=0.012 Score=58.61 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+|.|.|++|.||||+|+.++.++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999988653
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.98 E-value=0.14 Score=49.42 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFI 961 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~i 961 (996)
+.++.++|.+|...|+|++|...|++++++
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 445566666666666666666666666664
No 147
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.97 E-value=0.13 Score=57.17 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=49.0
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
....+.++.++|.+|..+|++++|.+++++++++.++. .+.|....+..+||.++...|+.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCH
Confidence 34566788999999999999999999999999987653 33388888999999988877764
No 148
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.93 E-value=0.21 Score=53.59 Aligned_cols=58 Identities=9% Similarity=-0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRG-GQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~-Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.+++++|.+|..+ |++++|.++|++++++.... .+++....++++||.++...|+.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCH
Confidence 467889999999996 99999999999999997642 12334456789999998877654
No 149
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.92 E-value=0.052 Score=72.70 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHH
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAI 542 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (996)
..+|.|+|++|+|||+||.+++.....+-..+.|++.... .... ++.++++..... +... +..+...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~------v~~~-~~~E~~l 1494 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL------CSQP-DTGEQAL 1494 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE------EECC-SSHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhce------eecC-ChHHHHH
Confidence 4589999999999999999999987766567888877654 3222 455665432210 0011 1234556
Q ss_pred HHHHHHHhcCCCEEEEEcCCCC
Q 001919 543 CRVRKELMRNIPFLVIIDNLES 564 (996)
Q Consensus 543 ~~l~~~L~~~~r~LLVLDdvd~ 564 (996)
..++...+..+.-+||+|.++-
T Consensus 1495 ~~~~~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1495 EICDALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGG
T ss_pred HHHHHHHhcCCCCEEEEcChhH
Confidence 6666666667888999999963
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.88 E-value=0.089 Score=57.37 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
.+++|+|.+|+||||++..++..+...-..+.+++.+.. .....+..+....++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeE
Confidence 479999999999999999999987766556778877654 2222343444445443
No 151
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.83 E-value=0.038 Score=69.44 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=40.7
Q ss_pred hhccccchHhhhhhhhcCCCCccccc-cccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRS-TKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~-~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
..++|.+..++.+..... +...+ .........+.|+|++|+|||+||+.+++.....-...+.+++.
T Consensus 558 ~~viG~~~a~~~l~~~i~---~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIR---RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp HHSCSCHHHHHHHHHHHH---HHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred cccCCcHHHHHHHHHHHH---HHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 357888887777653000 00000 00000124689999999999999999999875433345566654
No 152
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.77 E-value=0.13 Score=49.46 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHhhccCCCCHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDL-IRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l-~~~aL~ir~~~LG~dHpdTl 974 (996)
..++.++|.+|..+|++++|.+. +++++++ -|+||.+.
T Consensus 99 ~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~ 137 (150)
T 4ga2_A 99 KDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHH
Confidence 34455555555555555544433 3455543 34555443
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.77 E-value=0.3 Score=48.15 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLS 981 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA 981 (996)
+.++.++|.+|..+|++++|.+++++++++.++. .+......++.+++
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLN 194 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhccc
Confidence 3444555555555555555555555555554443 33333333443333
No 154
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.71 E-value=0.064 Score=50.08 Aligned_cols=72 Identities=8% Similarity=0.025 Sum_probs=46.4
Q ss_pred cccccccccccCchhHHH---hhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQE---LALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~---l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
+++.|++.+++.. |+. +.+..+.++.++|.+|..+|++++|.+.+++++++ .+++++. ..+||.++.
T Consensus 23 ~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a---~~~lg~~~~ 92 (126)
T 4gco_A 23 YFKKGDYPTAMRH--YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKFIKG---YIRKAACLV 92 (126)
T ss_dssp HHHTTCHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHH
T ss_pred HHHcCCHHHHHHH--HHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhhhHH---HHHHHHHHH
Confidence 4555666655322 221 23444667788888888888888888888888875 4555554 477888777
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..++.
T Consensus 93 ~~~~~ 97 (126)
T 4gco_A 93 AMREW 97 (126)
T ss_dssp HTTCH
T ss_pred HCCCH
Confidence 66653
No 155
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.68 E-value=0.13 Score=59.24 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
.++|+|+|.+|+||||++..++..+..+ -..+..++++.. .....+..+....+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~ 158 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVD 158 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCee
Confidence 3589999999999999999999988876 567888888754 3333344444555544
No 156
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.68 E-value=0.13 Score=43.63 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
.++.++|.+|...|++++|.+++++++++ .+++++.. .+||.++...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~---~~l~~~~~~~ 90 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAK---QNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHhc
Confidence 45678999999999999999999999986 46666654 8888887654
No 157
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.66 E-value=0.16 Score=56.37 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHH-hhhcccccccccccccCchhHHHh-------h-HhHHHHHHHHHHH
Q 001919 871 TFSRCSAALELLRLCTNALEAADHALVTPVEKL-LDKSLCWRPVQTNAQLNPSLWQEL-------A-LTRATVLETRAKL 941 (996)
Q Consensus 871 ~~~~~~~alell~~~~~~le~a~~~~~~~~~~~-~~~~l~~~~g~~~e~~~~~l~~~l-------~-~~~A~~l~~La~~ 941 (996)
..+.+..|++.+..+....+........ ...+ -.+.++...+++.++..- .-+.+ . +..+.++.++|.+
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLM-GRTLYNIGLCKNSQSQYEDAIPY-FKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3567777777777666655443211100 0011 111223334555544221 11111 2 5678899999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 942 MLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 942 y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
|..+|++++|.+++++++++..+. ++|.......+|+.++...++
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998876 345555557788887755443
No 158
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.64 E-value=0.018 Score=56.66 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998864
No 159
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.55 E-value=0.076 Score=61.32 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=31.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCc--cHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESR--YIRQNYLNL 512 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~--~~~~~l~~L 512 (996)
.++|+|.+|+|||||+..++.....++ +.+.++..... ...+.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHh
Confidence 589999999999999999998766544 34455544433 344444434
No 160
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.50 E-value=0.2 Score=55.70 Aligned_cols=57 Identities=18% Similarity=-0.069 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.+++++|.+|..+|++++|.+++++++++.+.. .+|....++.+||.++...|+.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCH
Confidence 46677788888888888888888888888876665 3455566667787777666653
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.45 E-value=0.28 Score=54.54 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.+++++|.+|..+|++++|++++++++++.++. .+.+....+++|||.++...|+.
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCH
Confidence 67889999999999999999999999999998776 45567888999999999888764
No 162
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.45 E-value=0.027 Score=63.21 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.++|+|.+|.|||||+..+++.+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHHhh
Confidence 6999999999999999999887654
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.43 E-value=0.18 Score=47.50 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
.++.++|.+|...|++++|.+.|++++++. +++|+..
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 123 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALA-----AAQPAHE 123 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchH
Confidence 456778888888888888888888887763 4555544
No 164
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.40 E-value=0.13 Score=55.19 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh-ccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL-ANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~-~~~ 990 (996)
.+.+++++|.+|..+|++++|..+|++++++..+. .+......++++||.++... |+.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~ 134 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDY 134 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCH
Confidence 57789999999999999999999999999998764 34555677889999999774 653
No 165
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.39 E-value=0.18 Score=58.16 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.|.|.+|+||||||..++.....+-..++|++.+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 479999999999999999999987655557889977643
No 166
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.38 E-value=0.022 Score=56.96 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|+|++|.||||+|+.++.++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998873
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.34 E-value=0.12 Score=47.12 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
+.++.++|.+|..+|+|++|.+.+++++++ .|+++++. .+||.++...|+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~g~ 76 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQALR---VFYAMVLYNLGR 76 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHHH---HHHHHHHHHcCC
Confidence 444555666666666666666666666554 34444433 555555554443
No 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.26 E-value=0.039 Score=55.23 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+|+|.|++|.||||+|+.++.++...--.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999998864422345553
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.15 Score=46.72 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLT 984 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~ 984 (996)
..++.++|.+|...|++++|.+.+++++++.... .+.|+.......|+.+.
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHH
Confidence 4456667777777777777777777777664322 24456665555555554
No 170
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.25 E-value=0.17 Score=57.90 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHHHHHccCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNLWSFLDVD 519 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~La~~L~~~ 519 (996)
.+|+|+|.+|+||||++..++..+..+-..+..++++.. .....+..++...+++
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence 479999999999999999999988766556778877654 2223344555555554
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.20 E-value=0.027 Score=57.46 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||+|+.++.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999998873
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.18 E-value=0.045 Score=55.81 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|.|++|.||||||+.++..+...-..+++++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 48999999999999999999998764333334665
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.15 E-value=0.12 Score=57.13 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
..+|+|+|.+|+||||++..++..+...-..+.+++++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3589999999999999999999988766556788877654
No 174
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.12 E-value=0.083 Score=58.00 Aligned_cols=63 Identities=6% Similarity=-0.068 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHhcccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDT----IAARETLSKLTRLLANVQ 991 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdT----l~s~~nLA~~~r~~~~~~ 991 (996)
+..+.++.++|.+|..+|++++|.+++++++++.....|++|+.+ .....+|+.++...|+.+
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 334678899999999999999999999999999999888887766 557789999988887654
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.03 E-value=0.028 Score=55.17 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEF 484 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~ 484 (996)
+|+|.|++|.||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999999998
No 176
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=93.99 E-value=0.21 Score=55.51 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+++++++++.... .+++....+..+||.++...|+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHHhccH
Confidence 46788999999999999999999999999998877 46788888999999999887764
No 177
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.98 E-value=0.12 Score=61.79 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+++.|.|.+|.||||++..+...+...-..+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 35799999999999999999998776554445444
No 178
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.97 E-value=0.16 Score=59.54 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~ 502 (996)
.++.|.|.+|+||||||.+++.....+ -..++|++.+.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 479999999999999999999987765 35788887754
No 179
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.93 E-value=0.27 Score=54.54 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++.|.|.+|+||||||..++.....+-..++|++.+-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999999999999998766556788887764
No 180
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=93.93 E-value=0.026 Score=52.11 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=52.4
Q ss_pred ccceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccHHHHH
Q 001919 159 RSCDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSIEELR 238 (996)
Q Consensus 159 ~~~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL~EL~ 238 (996)
.+|.|||||..+| .+..|+..| .+.|+ =|.| +.|+.+..-||+.+++.+.|+||-.|+.
T Consensus 3 ~~~~lFISh~~~d-~~~~L~~~l----~~~~f-~~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 3 AEIRLYITEGEVE-DYRVFLERL----EQSGL-EWRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCEEEEECCCCSH-HHHHHHHHH----HHHCS-CEEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred ceEEEEEecccHh-HHHHHHHHH----hCCCC-eeec---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 4689999999999 566677777 26677 3444 4588899988888888889999999996
Q ss_pred hhhc-CCceEee
Q 001919 239 YFSG-KKNLVPI 249 (996)
Q Consensus 239 ~i~~-~~~v~Pv 249 (996)
.=.+ .+.+|=|
T Consensus 62 ~A~~~gkpIigV 73 (111)
T 1eiw_A 62 LARKSSKPIITV 73 (111)
T ss_dssp HHTTTTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 5444 3444443
No 181
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.92 E-value=0.17 Score=54.15 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
..+.++.++|.+|..+|+|++|.+++++++++..+. .+++....+..++|.++...|+
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCC
Confidence 367889999999999999999999999999998765 5677778889999999988773
No 182
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.91 E-value=0.21 Score=57.61 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=54.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccc-c-chhhhcH--
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSR-I-KSFEEQE-- 538 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~-~-~~~~~~~-- 538 (996)
.++|.|.+|+|||+|+.++++.+... -+.++|+-+..+ .+.+.+..+...=.+.... . ..+.- + ...++..
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~-~-~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKD-A-TSKVALVYGQMNEPPGA 232 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSS-S-CCCEEEEEECTTSCHHH
T ss_pred eeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhcccccccc-C-CceEEEEEECCCCCHHH
Confidence 48999999999999999999986543 355666655554 4555555554321121000 0 00000 0 0000111
Q ss_pred ----HHHHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001919 539 ----EAAICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 539 ----~~~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
....-.+-++++ .++.+||++||+...
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 122234455663 589999999999753
No 183
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.86 E-value=0.15 Score=49.16 Aligned_cols=38 Identities=3% Similarity=-0.020 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHH
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDT 973 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdT 973 (996)
...++.++|.+|..+|++++|.+.|++++++. +++++.
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 115 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE-----GNGGSD 115 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----SSSCCH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCchHH
Confidence 35677888888888888888888888888863 566653
No 184
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.86 E-value=0.038 Score=56.37 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|.|++|.|||||++.++..+ +..+++...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~ 62 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADA 62 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccc
Confidence 379999999999999999998876 456676443
No 185
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.84 E-value=0.18 Score=54.48 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.+++++|.+|..+|++++|++.+++++++ .|++|+++ .||+.++...|+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l---~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETL---INLVVLSQHLGKP 250 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHcCCC
Confidence 34567889999999999999999999999985 58888887 8888888777664
No 186
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.82 E-value=0.089 Score=51.57 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+++++.+||.+|..+|+|++|.+.|++++++ .|++++.. .+||.++...++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~la~~~~~~~~~ 55 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNVETL---LKLGKTYMDIGLP 55 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHCCCH
Confidence 4677889999999999999999999999986 46666654 8888888776654
No 187
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.81 E-value=0.036 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||+|+.++.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998875
No 188
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.78 E-value=0.19 Score=54.45 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRL 986 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~ 986 (996)
.+.+++++|.+|..+|++++|.++|++++++.++. | ++.....+++|||.++..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc
Confidence 57789999999999999999999999999998653 2 445667888999998854
No 189
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.77 E-value=0.17 Score=54.15 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.++.++|.+|..+|+|++|.+++++++++... ..++.....+..++|.++...|+.
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~ 252 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCc
Confidence 368899999999999999999999999999754 456667788899999999888764
No 190
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.76 E-value=0.14 Score=67.93 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|.+|+||||||.+++......-..++|++.+.. ... .+..++....... +.. ..+.++...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~------i~~-~~~~e~~l~ 451 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLL------CSQ-PDTGEQALE 451 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCE------EEC-CSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeE------EcC-CCCHHHHHH
Confidence 489999999999999999999987766668999988765 321 2556665532110 000 113445555
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcc
Q 001919 544 RVRKELMRNIPFLVIIDNLESEK 566 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~ 566 (996)
.+....+..+.-+||+|.+....
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHHHhcCCCEEEECCHHHhh
Confidence 55554545667799999998653
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.73 E-value=0.062 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|.|++|.||||+++.++..+...--.+.+++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 47999999999999999999998765432345553
No 192
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.67 E-value=0.032 Score=55.05 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|+|++|.|||||++.++..+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999988764
No 193
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.64 E-value=0.34 Score=43.44 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..++.++|.+|...|++++|..++++++.+.... +.+++....+..++|.++...++.
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHhccH
Confidence 3456789999999999999999999999986543 566666677889999998776653
No 194
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.63 E-value=0.6 Score=51.56 Aligned_cols=149 Identities=9% Similarity=-0.066 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh-cCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH-QRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~-~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
++..++|..|.||++.+..+...+. ..|+....+..... .+..+..+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~l~~ 66 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--------------------------------TDWNAIFS 66 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT--------------------------------CCHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC--------------------------------CCHHHHHH
Confidence 4799999999999999999998764 34542211111111 01222222
Q ss_pred HHHH-HHhcCCCEEEEEcCCCC-cccccchHHHhhhccCCCCCeEEEEEecCC-------Cc-----CCcceEEccCCCH
Q 001919 544 RVRK-ELMRNIPFLVIIDNLES-EKDWWDDKLVMDLLPRFGGETHIIISTRLP-------RV-----MNLEPLKLSYLSG 609 (996)
Q Consensus 544 ~l~~-~L~~~~r~LLVLDdvd~-~~~~~~~~~L~~~lp~~~~gsrIIITTR~~-------~~-----~~~~~~~v~~L~~ 609 (996)
.+.. -+ -+++-++|+|+++. ...- ..+.|.+++....+++.+|++|-.. .+ ....+++..+++.
T Consensus 67 ~~~~~pl-f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 67 LCQAMSL-FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp HHHHHHH-CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred HhcCcCC-ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 2221 12 46677889999987 4211 1256777775544577777776431 12 1236889999999
Q ss_pred HHHHHHHhhhcCCCC-cccHHHHHHHHHHhCCChHHHHH
Q 001919 610 VEAMSLMQGSVKDYP-ITEVDALRVIEEKVGRLTMGLAV 647 (996)
Q Consensus 610 ~EA~~Lf~~~a~~~~-~~~~~~a~~iv~~lgglPLAL~~ 647 (996)
.+-.+.+...+.... .-+.+.+..|++.++|-...+..
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHH
Confidence 999988888764222 23566788899999988766543
No 195
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.098 Score=54.60 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH-hcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY-HQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~-~~~F~~v~wi~~~~ 502 (996)
.++.|.|.+|+|||+||.+++... ...-..++|++.+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 489999999999999999988753 33345677776654
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.62 E-value=0.28 Score=56.60 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~ 502 (996)
.++.|.|.+|+||||||..++...... -..++|++.+.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 479999999999999999999987643 34688887664
No 197
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.57 E-value=0.12 Score=55.48 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.+++++|.+|..+|+|++|.++|++++.+.++. +.+++..+.+.+|||.++...++.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHH
Confidence 46789999999999999999999999999988765 458899999999999999877653
No 198
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.57 E-value=0.041 Score=55.02 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
+|+|.|++|.||||+|+.++.++..+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999987643
No 199
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.55 E-value=0.041 Score=54.49 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~ 486 (996)
+|.|.|++|.||||+|+.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 699999999999999999987
No 200
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.55 E-value=0.035 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999998764
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.54 E-value=0.15 Score=68.28 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
.++.|.|.+|+||||||.+++......-..++|++.+.. ... .++.+++...... +.. ..+..+...
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~------I~~-~~~~e~il~ 451 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLL------CSQ-PDTGEQALE 451 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCE------EEC-CSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeE------EeC-CCCHHHHHH
Confidence 489999999999999999999987766567899987765 322 2556665432110 000 123445555
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.++...+....-|||+|-+...
T Consensus 452 ~~~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHHHhcCCcEEEECCHHHh
Confidence 5555444566779999999765
No 202
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.53 E-value=0.28 Score=45.18 Aligned_cols=51 Identities=6% Similarity=-0.075 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.++.++|.+|...|++++|+..+++++++ .|++++.. .+||.++...|+.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~---~~la~~~~~~g~~ 101 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVH---AALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHcCCH
Confidence 456678999999999999999999999986 67777755 7888888766653
No 203
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.47 E-value=0.038 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|++|.||||||+.++..+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999886
No 204
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.39 E-value=0.033 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|.|+|++|.||||+|+.++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 205
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.36 E-value=0.046 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|.|.|++|.||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 206
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.30 E-value=0.037 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998864
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.26 E-value=0.18 Score=66.71 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc-cHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR-YIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~-~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
++|-|+|+.|+||||||.++....+..-..++||+++.. +.. +++.+|++...... . .-+..++.+.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~l~~---~----~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLC---S----QPDTGEQALE 1499 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEE---E----CCSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHH-----HHHHcCCCHHHeEE---e----CCCcHHHHHH
Confidence 699999999999999999999888878788999987765 332 27788887643210 1 1123466777
Q ss_pred HHHHHHhcCCCEEEEEcCCCCc
Q 001919 544 RVRKELMRNIPFLVIIDNLESE 565 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~ 565 (996)
.+...++....-+||+|-|...
T Consensus 1500 ~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHHHcCCCCEEEEccHHhC
Confidence 7777776777889999998754
No 208
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.19 E-value=0.08 Score=53.86 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+|+|.|++|.||||+|+.++.++...+ .+++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 3799999999999999999999876544 34444
No 209
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.18 E-value=0.05 Score=57.88 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||||+.++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998764
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.16 E-value=0.052 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|+.|.||||+++.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998875
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.15 E-value=0.045 Score=54.94 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+|+|.|++|.|||||++.++... ..+.++++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~ 42 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP---GVPKVHFHS 42 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcc
Confidence 479999999999999999987641 235566653
No 212
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.12 E-value=0.17 Score=49.14 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=52.6
Q ss_pred cccccccccccCchhHHHh---hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQEL---ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~l---~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
++..|++.++.. .|+.. .+..+..+.++|.+|..+|+|++|.+.|++++++ .|++|+.. .|||.++.
T Consensus 46 ~~~~g~~~eA~~--~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~---~~lg~~~~ 115 (151)
T 3gyz_A 46 FYNKGRIEEAEV--FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPV---FHTGQCQL 115 (151)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHH---HHHHHHHH
T ss_pred HHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHH---HHHHHHHH
Confidence 444566666532 22222 4444667889999999999999999999999986 57787765 89999988
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..|+.
T Consensus 116 ~lg~~ 120 (151)
T 3gyz_A 116 RLKAP 120 (151)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 77764
No 213
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.10 E-value=0.27 Score=56.88 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~ 502 (996)
.++.|.|.+|+||||||..++...... -..++|++.+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 489999999999999999999977643 34688887654
No 214
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.08 E-value=0.039 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999988754
No 215
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.07 E-value=0.028 Score=63.02 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC-CEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY-KMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAIC 543 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (996)
++|+|.|+.|.|||||.+.+...+.... ..++.+....+... ........... . ..+......
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~------~~~~~~v~q~~-------~---~~~~~~~~~ 187 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH------ESKKCLVNQRE-------V---HRDTLGFSE 187 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC------CCSSSEEEEEE-------B---TTTBSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh------hccccceeeee-------e---ccccCCHHH
Confidence 5899999999999999999988776543 34444432111100 00000000000 0 001112344
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCC
Q 001919 544 RVRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPR 595 (996)
Q Consensus 544 ~l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~ 595 (996)
.+...| ...+=+|++|...+.+.+ ..+..... .|..||+||-+..
T Consensus 188 ~La~aL-~~~PdvillDEp~d~e~~---~~~~~~~~---~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 188 ALRSAL-REDPDIILVGEMRDLETI---RLALTAAE---TGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHT-TSCCSEEEESCCCSHHHH---HHHHHHHH---TTCEEEEEESCSS
T ss_pred HHHHHh-hhCcCEEecCCCCCHHHH---HHHHHHHh---cCCEEEEEEccCh
Confidence 777788 677788899999865222 22222222 2455888886543
No 216
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.41 Score=42.00 Aligned_cols=54 Identities=7% Similarity=0.078 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDH---PDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dH---pdTl~s~~nLA~~~r~~~~~ 990 (996)
..++.++|.+|...|++++|.+.+++++++ .+++ .....+..+++.++...+..
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TSTAEHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence 356789999999999999999999999985 4554 11245668888888877755
No 217
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.04 E-value=0.47 Score=52.25 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|..+|++++|.+.|++++++ .+++++ +..+|+.++...++.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~---a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKA---AKTQLAVCQQRIRRQ 280 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHH---HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888875 355554 447777777665543
No 218
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.03 E-value=0.41 Score=48.43 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
..++.++|.+|..+|++++|.+.|++++++ .|++++.. .+||.++...+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~---~~lg~~~~~~~ 136 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAAN---IFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH---HHHHHHHHHHh
Confidence 456788999999999999999999999996 57777765 78887775443
No 219
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.01 E-value=0.92 Score=47.77 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|..++++++.+.... .+++....+..+||.++...|+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCh
Confidence 46788899999999999999999999999998766 44777888899999999888765
No 220
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.00 E-value=0.76 Score=50.40 Aligned_cols=59 Identities=15% Similarity=0.021 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|..+|++++|.+++++++++..+. .+++....+..+||.++...|+.
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCCH
Confidence 347788999999999999999999999999998775 77888899999999999887764
No 221
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.99 E-value=0.08 Score=58.28 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
+.+||+|.|=|||||||.+.-++.-+...-..|+-|+++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6689999999999999999999998887766788888774
No 222
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.97 E-value=0.061 Score=53.24 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|+|+|++|.||||+++.++..+ +..+++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCc
Confidence 479999999999999999998775 34566544
No 223
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.97 E-value=0.047 Score=55.37 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.|+|+|++|+|||||++.+..++...|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 589999999999999999887765544
No 224
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.96 E-value=0.059 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998875
No 225
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.96 E-value=0.19 Score=45.54 Aligned_cols=51 Identities=12% Similarity=0.041 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
...++.++|.+|...|++++|.+++++++.+ +|+...+..+|+.++...++
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 3567889999999999999999999999986 23334456888888876653
No 226
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.94 E-value=0.061 Score=52.75 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|.|++|.||||+|+.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 227
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.94 E-value=0.053 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999998764
No 228
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.93 E-value=0.32 Score=52.04 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||.+.++--+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987654
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.93 E-value=0.65 Score=41.61 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRL 986 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~ 986 (996)
.+.++.+||.+|..+|++++|..++++++.+ .|+|+.++ +|++.+-..
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~---~n~~~~~~~ 92 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQRAN---GNLKYFEYI 92 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHH---hhHHHHHHH
Confidence 4567789999999999999999999999985 78998886 666644433
No 230
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.89 E-value=0.3 Score=56.60 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCC-EEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYK-MVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~-~v~wi~ 499 (996)
+.+.|.|.+|.|||+++..++..+..... .++.+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 37999999999999999999987765543 555553
No 231
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.88 E-value=0.062 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 232
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.87 E-value=0.058 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||+|+.++.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998764
No 233
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.87 E-value=0.24 Score=57.36 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcCc--cHHHHHHHHHHHccCccCcccCCcccc-c-chhhhc---
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGESR--YIRQNYLNLWSFLDVDVGIENCSDKSR-I-KSFEEQ--- 537 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~~--~~~~~l~~La~~L~~~~~~~~~~~~~~-~-~~~~~~--- 537 (996)
.++|.|.+|+|||+|+.++++.+.. +-+.++|+-+..+ ...+.+..+...=.+...... ..+.- + ...++.
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~-~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIA-ESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTC-CCCEEEEEECTTSCHHH
T ss_pred eEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhccccccccccc-ccceEEEEeCCCCCHHH
Confidence 4899999999999999999998654 3456667755544 455555555432111100000 00000 0 000011
Q ss_pred ---HHHHHHHHHHHHh--cCCCEEEEEcCCCCc
Q 001919 538 ---EEAAICRVRKELM--RNIPFLVIIDNLESE 565 (996)
Q Consensus 538 ---~~~~~~~l~~~L~--~~~r~LLVLDdvd~~ 565 (996)
.....-.+.++++ .++.+||++||+...
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1122334556663 478999999998753
No 234
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.87 E-value=0.14 Score=50.22 Aligned_cols=51 Identities=10% Similarity=-0.047 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..++..+|.+|..+|++++|.+.|++++++ .|+++++ ..+||.++...|+.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~---~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFIRA---YQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhhhH---HHHHHHHHHHCCCH
Confidence 446678888888888888888888888876 3555554 47888888776654
No 235
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.86 E-value=0.69 Score=51.26 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+++++++++..+. .+++....++.+||.++...|+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 46688999999999999999999999999998876 56777788999999999877764
No 236
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.85 E-value=0.22 Score=44.08 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIR 962 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir 962 (996)
..++.++|.+|...|++++|.+.+++++++.
T Consensus 41 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 41 VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4455666666666666666666666666653
No 237
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.85 E-value=0.063 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999988763
No 238
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.82 E-value=0.15 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+|+|.|++|.||||+|+.++.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 239
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.82 E-value=0.079 Score=54.11 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKM 494 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~ 494 (996)
.+|+|.|++|.||||+|+.++.++... ++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 379999999999999999999987654 444
No 240
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.76 E-value=0.34 Score=56.70 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
..+|+|+|.+|+||||++..+++.+..+-..+..++++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 358999999999999999999998776544566776654
No 241
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=92.76 E-value=0.83 Score=50.10 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANVQ 991 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~~ 991 (996)
...+.++.++|.+|...|++++|.+++++++++.++. .+.+....++.+||.++...|+.+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhH
Confidence 3457789999999999999999999999999999877 888999999999999999887654
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.75 E-value=0.11 Score=61.57 Aligned_cols=129 Identities=18% Similarity=0.106 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCChhHHHHHHH-HHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCccc----------CCcccccch
Q 001919 465 GIACVTGDSGIGKTELLLEFA-YRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIEN----------CSDKSRIKS 533 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~-~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~----------~~~~~~~~~ 533 (996)
.+++|.|++|.|||||++.++ .-+...-.+.++++.... ...+...++.++...+... .........
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 489999999999999999963 333322246788876542 1122222333332211000 000000000
Q ss_pred h-hhcHHHHHHHHHHHHhcCCCEEEEEcCCCCcc-----cccchHHHhhhccCC-CCCeEEEEEecCCC
Q 001919 534 F-EEQEEAAICRVRKELMRNIPFLVIIDNLESEK-----DWWDDKLVMDLLPRF-GGETHIIISTRLPR 595 (996)
Q Consensus 534 ~-~~~~~~~~~~l~~~L~~~~r~LLVLDdvd~~~-----~~~~~~~L~~~lp~~-~~gsrIIITTR~~~ 595 (996)
. .-+..+....+...|...++=+||||.+.... +......+..++... ..|..||+||.+..
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~ 186 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 186 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 0 01233455566666655667789999986421 000113444444221 12566777776644
No 243
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.67 E-value=0.067 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.67 E-value=0.063 Score=53.76 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+++|+|++|.|||||++.+...+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3799999999999999999988654
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.63 E-value=0.057 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|+|||||++.++.++.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999988764
No 246
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.60 E-value=0.069 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++..+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999988753
No 247
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.60 E-value=0.6 Score=41.65 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..++.++|.+|...|++++|..++++++.+ .++++.. ..+++.++...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALEL-----DPDNETY---KSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHH---HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CccchHH---HHHHHHHHHHHhcC
Confidence 557789999999999999999999999986 4556654 48889888777653
No 248
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.59 E-value=0.068 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
+|+|+|++|.||||+++.++.+
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999887
No 249
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.16 Score=44.72 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+..+.++|.+|..+|+|++|.+.|++++++ .++++.. ..++|.++...++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~---~~~lg~~~~~~g~~ 54 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVG---YSNKAMALIKLGEY 54 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHHHhcCH
Confidence 567789999999999999999999999986 4566655 48999988777653
No 250
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.52 E-value=0.59 Score=42.81 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhh
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTS 964 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~ 964 (996)
..++.++|.+|...|++++|...+++++++...
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 455677777777777777777777777776543
No 251
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.51 E-value=0.072 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||+|+.++.++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999988763
No 252
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.50 E-value=0.99 Score=47.52 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|...|++++|.+++++++.+.... .+++....+..+||.++...|+.
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCH
Confidence 56688999999999999999999999999998775 56778888999999999877764
No 253
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.41 E-value=0.43 Score=55.45 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..+|+|+|.+|.|||||++.++..+...-..+.+...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 3589999999999999999999877654333444433
No 254
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.40 E-value=0.42 Score=48.67 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..++.++|.+|..+|++++|...|++++++ .|++++.. .+||.++...|+.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~---~~la~~~~~~g~~ 201 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDLDLR---VRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH---HHHHHHHTC----
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHH---HHHHHHHHHccCH
Confidence 467889999999999999999999999985 56666554 8888888766654
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.36 E-value=0.07 Score=54.80 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.+|+|.|++|+|||||++.++..+...|
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~ 36 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSF 36 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcE
Confidence 4799999999999999999988765433
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.32 E-value=0.077 Score=54.40 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|+|.|++|.|||||++.++..+...-..+.+|...
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 4899999999999999999988776421124445433
No 257
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.32 E-value=0.077 Score=54.11 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKM 494 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~ 494 (996)
.+|+|.|++|.||||+|+.++.++... ++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 379999999999999999999987654 444
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.32 E-value=0.22 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+|+|.|+.|.||||+++.++.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 259
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.30 E-value=0.67 Score=41.82 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
..++.++|.+|...|++++|.++++++++. .+++|+..
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 98 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKIIAE-----TSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCCHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence 456778999999999999999999999986 47788776
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.25 E-value=0.061 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
+++|.|+.|.|||||++.+...+...|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 699999999999999999998765333
No 261
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.16 E-value=0.21 Score=57.26 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCCC----EEEEEeCcCc--cHHHHHHHHHHH--ccCccCcccCCcccccchh
Q 001919 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRYK----MVLWVGGESR--YIRQNYLNLWSF--LDVDVGIENCSDKSRIKSF 534 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~----~v~wi~~~~~--~~~~~l~~La~~--L~~~~~~~~~~~~~~~~~~ 534 (996)
|++ ++|.|..|+|||+|+.++++....+.+ .++++-+..+ .+.+.+..+... +....-.....+.. ...
T Consensus 151 GQr-~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p--~~~ 227 (465)
T 3vr4_D 151 GQK-LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDP--AIE 227 (465)
T ss_dssp TCB-CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSC--HHH
T ss_pred CCE-EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCC--HHH
Confidence 443 789999999999999999887554323 5566655544 455555554332 11000000000000 000
Q ss_pred hhcHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Q 001919 535 EEQEEAAICRVRKELM--RNIPFLVIIDNLES 564 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~ 564 (996)
........-.+.++++ .++.+||++||+..
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0011112234566674 37899999999975
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.16 E-value=0.082 Score=53.08 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+++|.|++|.|||||++.++.. ..+.++++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 7899999999999999999752 34456664
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.15 E-value=0.12 Score=52.77 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|.|.+|.|||||++.+...+...--.+.+++
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 48999999999999999999887654322244553
No 264
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.15 E-value=0.33 Score=56.20 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=49.2
Q ss_pred EEEEEcCCCCChhHHHH-HHHHHHhcCCC-EEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHH
Q 001919 466 IACVTGDSGIGKTELLL-EFAYRYHQRYK-MVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~-~~~~~~~~~F~-~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~ 539 (996)
.++|.|..|+|||+||. .++++ + +-+ .++++-...+ .+.+.+..+...=.+... ............+ ...
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~-~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~--~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ-R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY--LAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT-S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH--HHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh-c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH--HHH
Confidence 48999999999999985 44443 2 233 3556665554 555555555442111100 0000000000000 011
Q ss_pred HHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001919 540 AAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 540 ~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
...-.+-++++ +++.+|||+||+...
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11223445553 688999999999753
No 265
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.12 E-value=0.51 Score=50.36 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH-HHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI-AARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl-~s~~nLA~~~r~~~~~ 990 (996)
.+.+++++|.+|..+|+|++|.++|++++.+.+... +.+... .+.+|+|.++...++.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhH
Confidence 467899999999999999999999999999987654 334333 7889999999877653
No 266
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.09 E-value=0.087 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998764
No 267
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.09 E-value=0.24 Score=56.07 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+++|.|+.|.|||||.+.++--.. ..+.++++.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G 81 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDG 81 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESS
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECC
Confidence 4899999999999999999875332 346666654
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.08 E-value=0.086 Score=54.09 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 269
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.06 E-value=0.81 Score=39.97 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLT 984 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~ 984 (996)
..++.++|.+|...|++++|.+++++++++ .++++... .+++.+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~---~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLK---EGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHH---HHHHHhh
Confidence 456778888888888888888888888763 56666655 5555443
No 270
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.04 E-value=0.33 Score=49.45 Aligned_cols=48 Identities=17% Similarity=-0.047 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
+.++.++|.+|..+|++++|...+++++++ .|++++.. .+||.++...
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~---~~lg~~~~~~ 86 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYLGGY---MVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH---HHHHHHHHHh
Confidence 456788999999999999999999999996 57776655 7888887766
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.03 E-value=0.082 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||++.++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 379999999999999999988764
No 272
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.02 E-value=0.24 Score=47.50 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=56.7
Q ss_pred hcccccccccccccCchhHHH--hhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 001919 906 KSLCWRPVQTNAQLNPSLWQE--LALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKL 983 (996)
Q Consensus 906 ~~l~~~~g~~~e~~~~~l~~~--l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~ 983 (996)
+.+++..+++.++... .-+. +.+.-+.++.++|.+|...|++++|...|++++++ .|++++.. .+||.+
T Consensus 38 a~~y~~~~~~~~A~~~-~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~la~~ 108 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKY-ICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQKDLV---LKIAEL 108 (150)
T ss_dssp HHHHHHTTCHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHH
T ss_pred HHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCHHHH---HHHHHH
Confidence 4445556777665321 1111 25566788999999999999999999999999986 57787766 899999
Q ss_pred HHHhccc
Q 001919 984 TRLLANV 990 (996)
Q Consensus 984 ~r~~~~~ 990 (996)
+...++.
T Consensus 109 ~~~~~~~ 115 (150)
T 4ga2_A 109 LCKNDVT 115 (150)
T ss_dssp HHHHCSS
T ss_pred HHHcCCh
Confidence 9877764
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.97 E-value=0.08 Score=53.81 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~ 486 (996)
+|+|.|+.|.||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999999887
No 274
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.97 E-value=0.17 Score=52.84 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.|.+.|.||+||||+|..+++.+..+-..+.++..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5889999999999999999998776544455555554
No 275
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.91 E-value=0.098 Score=53.25 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
+.+|+|+|+.|.||||+|+.++.++ +..+++++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECc
Confidence 4589999999999999999998864 34566543
No 276
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.91 E-value=0.095 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|.|.|++|.||||+|+.++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998865
No 277
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.81 E-value=0.059 Score=60.46 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHHhcCC-C-EEEEEeCcC
Q 001919 463 GKGIACVTGDSGIGKTELLLEFAYRYHQRY-K-MVLWVGGES 502 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F-~-~v~wi~~~~ 502 (996)
|+ .++|.|.+|+|||+|+.++++.+.... + .++++-...
T Consensus 175 GQ-R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 175 GQ-RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp TC-EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred Cc-eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 44 489999999999999999999765432 2 234554443
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.80 E-value=0.096 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.|||||++.++.++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998764
No 279
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.78 E-value=0.48 Score=55.87 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+++|.|.+|+|||||++.++......-..++++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4899999999999999999998765443335555544
No 280
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.76 E-value=0.37 Score=55.79 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=48.3
Q ss_pred EEEEEcCCCCChhHHHH-HHHHHHhcCCCE-EEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHH
Q 001919 466 IACVTGDSGIGKTELLL-EFAYRYHQRYKM-VLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~-~~~~~~~~~F~~-v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~ 539 (996)
.++|.|.+|+|||+||. .+++.. +-+. ++++-...+ .+.+.+..+...=.+... .....+.. ........
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p--~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEP--APLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSC--HHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCC--HHHHHHHH
Confidence 48999999999999976 455443 3443 355554444 454544444432111100 00000000 00000001
Q ss_pred HHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001919 540 AAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 540 ~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
...-.+-++++ .++.+|||+||+...
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11234455563 578999999999753
No 281
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.73 E-value=0.15 Score=56.65 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|.|++|+||||||..++.++. ..+|++++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceecccc
Confidence 3799999999999999999988764 45566554
No 282
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.73 E-value=0.1 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|.|++|.||||+|+.++.++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999998764
No 283
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.72 E-value=0.25 Score=44.41 Aligned_cols=49 Identities=20% Similarity=0.043 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.++.++|.+|...|++++|...+++++.+ .++++. +..+||.++...|+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~ 68 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSV---AWKWLGKTLQGQGD 68 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHH---HHHHHHHHHHHcCC
Confidence 34566777777777777777777777764 344444 33666666655554
No 284
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.71 E-value=0.91 Score=39.17 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 934 VLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 934 ~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
++.++|.+|..+|++++|.+.|++++++ .+++++.. ....++.++..+.++
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~-~~~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPALQ-ARKMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHHH-HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHH-HHHHHHHHHHHHHHH
Confidence 6778999999999999999999999986 67777765 236777777777554
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.68 E-value=0.093 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.|||||++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999988765
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.67 E-value=0.11 Score=56.26 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+|.|.|++|.||||||+.++.++. ...++|+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 4799999999999999999987753 24466654
No 287
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.63 E-value=0.093 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998765
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.61 E-value=0.091 Score=53.54 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~ 486 (996)
+|+|.|+.|.||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 289
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.59 E-value=1.1 Score=39.34 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
..++.++|.+|...|++++|..++++++.+ .+++++.. .+|+.++...
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~---~~l~~~~~~~ 124 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAK---QNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHH---HHHHHHHHhc
Confidence 456789999999999999999999999986 45666554 7888777544
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.53 E-value=0.079 Score=52.63 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCChhHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLE 483 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~ 483 (996)
.+++|+|++|.|||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4899999999999999995
No 291
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.53 E-value=0.092 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|++|.||||+|+.++.++
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998875
No 292
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.52 E-value=0.055 Score=59.69 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=34.9
Q ss_pred chhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 431 EIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 431 ~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
...++|++..+..+.. .+.. + .-|.|+|++|+|||+||+.+++.+...|
T Consensus 26 ~~~i~g~~~~~~~l~~------~l~~------~-~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 26 GKVVVGQKYMINRLLI------GICT------G-GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTTCCSCHHHHHHHHH------HHHH------T-CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred ccceeCcHHHHHHHHH------HHHc------C-CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3467888887776652 1100 1 2389999999999999999998875543
No 293
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.52 E-value=0.15 Score=54.17 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+|.|-||+||||+|..++..+..+-..++-|+++..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 67788999999999999999988876567888887644
No 294
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=91.51 E-value=1.3 Score=48.40 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
+.++.++|.+|..+|++++|++++++++++..+. | ++....++.+||.++...|+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-Q--PQQQLQCLAMLIQCSLARGD 189 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-C--GGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-C--cHHHHHHHHHHHHHHHHcCC
Confidence 4455666666666677777777666666665432 2 22244555666666655554
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.50 E-value=0.11 Score=53.12 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+|+|.|+.|.|||||++.++..+.. .+.+++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~ 39 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---RVALLPM 39 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec
Confidence 37999999999999999999887653 2445543
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.49 E-value=0.22 Score=56.15 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCC-EEEEEe
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYK-MVLWVG 499 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~-~v~wi~ 499 (996)
..+|+|+|+.|.|||||.+.++..+..... .++++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 358999999999999999999887665433 444554
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.49 E-value=0.15 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCC-EEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYK-MVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~-~v~wi~~~~ 502 (996)
.+++|.|.+|+|||||++.++..+..... .++|+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 38999999999999999999987765532 577776543
No 298
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.46 E-value=0.17 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.+|+|.|+.|.||||+++.++..+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999999999987654
No 299
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.45 E-value=0.39 Score=43.52 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKL 983 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~ 983 (996)
..++.++|.+|..+|++++|...+++++.. .|+++....++..|..+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ-----YPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHH
Confidence 555677777777777777777777777764 36666666555555443
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.45 E-value=0.19 Score=50.06 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
.+++|.|..|.|||||+..++..+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 479999999999999999999987765
No 301
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.44 E-value=0.42 Score=52.62 Aligned_cols=32 Identities=9% Similarity=-0.171 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHH
Q 001919 930 TRATVLETRAKLMLRGGQFDMG-DDLIRKAVFI 961 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eA-e~l~~~aL~i 961 (996)
....++.++|.+|..+|++++| ..+|++.+..
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999 5678887764
No 302
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.43 E-value=0.12 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.++|+|+.|.|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.43 E-value=0.11 Score=53.11 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|+|++|+|||||++.+...+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999987654
No 304
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.42 E-value=0.34 Score=56.16 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=48.5
Q ss_pred EEEEEcCCCCChhHHHH-HHHHHHhcCCCE-EEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhcHH
Q 001919 466 IACVTGDSGIGKTELLL-EFAYRYHQRYKM-VLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQEE 539 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~-~~~~~~~~~F~~-v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~~~ 539 (996)
.++|.|.+|+|||+||. .+++.. .-+. ++++-...+ .+.+.+..+...=.+... .....+.. ........
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p--~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDP--ASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSC--HHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCC--HHHHHHHH
Confidence 48999999999999976 555543 2443 345554444 455555444331111100 00000000 00000011
Q ss_pred HHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001919 540 AAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 540 ~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
...-.+-++++ .++.+|||+||+...
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 11234455663 578999999999753
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.34 E-value=0.11 Score=55.13 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.+|+|.|++|.||||+|+.++..+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999887653
No 306
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.33 E-value=0.17 Score=55.20 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++|+|+|-||+||||+|..++..+...-..++-|+++..
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3578888999999999999999988876567888887644
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.33 E-value=0.12 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.29 E-value=0.32 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|+|+.|+||||+++.++..+...-..+.+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 48999999999999999999988765433344443
No 309
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.25 E-value=0.32 Score=41.08 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|...|++++|.+++++++.+ .++++.+ ..+||.++...++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~---~~~l~~~~~~~~~~ 59 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEA---WYNLGNAYYKQGDY 59 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHHHHhhH
Confidence 4567889999999999999999999999986 4556554 58888888766653
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.25 E-value=0.11 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|+.|.|||||++.++.++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 311
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.19 E-value=0.18 Score=55.08 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|+|++|+|||||+..++..+...-..+.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48999999999999999999987765433444444
No 312
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.19 E-value=0.34 Score=52.71 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHHHHHhcccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGE---DHPDTIAARETLSKLTRLLANVQ 991 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~---dHpdTl~s~~nLA~~~r~~~~~~ 991 (996)
....++.++|.+|..+|++++|.+++++++.+.....|+ .++....+..+|+.++...|+.+
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 345678899999999999999999999999998766443 34555677799999999888753
No 313
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.19 E-value=0.62 Score=52.17 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=38.9
Q ss_pred hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 928 ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 928 ~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.+..+.++.++|.+|..+|++++|.+.|++++++ .+++++.. .+|+.++...++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~---~~l~~~~~~~~~ 356 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQ---AELLKVKQKIKA 356 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHHH
Confidence 3445677888888888888888888888888875 35566554 666666665543
No 314
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.18 E-value=0.17 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
++|+|.|-||+||||+|..++..+...-..++-|+++..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368889999999999999999988766556888887654
No 315
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.18 E-value=0.52 Score=50.49 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.-..++.+||.+|..+|++++|.+.|++++.. .+++.+ ..++.+|+.++...|+.
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-----~p~~~~-~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRX-----DLTAAD-GQTRXTFQEILAALGTG 271 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTGGG-GHHHHHHHHHHHHHCTT
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----cccccc-chHHHHHHHHHHHcCCC
Confidence 344567899999999999999999999999996 234411 34568899988888764
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.03 E-value=0.11 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+|+|.|+.|.||||+|+.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999998875
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.00 E-value=0.11 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|.|++|.||||+|+.++.++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 318
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.00 E-value=0.29 Score=56.42 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=51.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC----CEEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccchhhhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY----KMVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKSFEEQ 537 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F----~~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~~~~~ 537 (996)
.++|.|.+|+|||+|+..++....-.. +.++++-+..+ .+.+.+..+...=.+... .....+.. ......
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p--~~~r~~ 231 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDP--AVERIV 231 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSC--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCC--HHHHHH
Confidence 378999999999999999998754311 34556655544 455555444432111100 00000000 000001
Q ss_pred HHHHHHHHHHHHh--cCCCEEEEEcCCCC
Q 001919 538 EEAAICRVRKELM--RNIPFLVIIDNLES 564 (996)
Q Consensus 538 ~~~~~~~l~~~L~--~~~r~LLVLDdvd~ 564 (996)
.....-.+.++++ .++.+||++||+..
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 1112234555664 58999999999764
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.96 E-value=0.11 Score=53.01 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|+|.|++|.||||||+.++.. +..+.+++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~----~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH----LPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT----STTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh----cCCcEEEeCC
Confidence 47999999999999999987654 3345666544
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.94 E-value=0.11 Score=52.74 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|+.|.||||+++.++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998876
No 321
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.93 E-value=0.14 Score=52.48 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|++|.||||+|+.++..+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998765
No 322
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=90.93 E-value=0.89 Score=52.38 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
..+.++.++|.+|..+|+|++|...|++++++ +|+...++.+|+.++...++
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777764 23333455677776665554
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.92 E-value=0.13 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|++|.||||+|+.++.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998776
No 324
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.90 E-value=0.1 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|+|++|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3699999999999999999998774
No 325
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.82 E-value=0.24 Score=52.25 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++++.|.||+|||||+..++..+. .-..+.-++++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 5799999999999999999998877 544566666553
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.79 E-value=0.16 Score=55.27 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC---CCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR---YKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~---F~~v~wi~~~~ 502 (996)
.+|+|.|.+|.||||||+.+...+... ...+..|..+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 489999999999999999998876542 33444545443
No 327
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.71 E-value=0.17 Score=52.64 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCChhHHHHHHHHHH
Q 001919 463 GKGIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 463 ~~~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
..+||.|.|+||.||||+|..++.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998876
No 328
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.70 E-value=0.27 Score=49.64 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=32.0
Q ss_pred EEEEE-cCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 466 IACVT-GDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~-G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+|+ +-||+||||+|..++..+..+-..++.++++..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 67777 679999999999999988876667889988765
No 329
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.69 E-value=0.22 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.330 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
++.|+|+.|.||||++..+++++...-..++++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 789999999999999999888875443344444
No 330
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=90.63 E-value=0.55 Score=42.74 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=52.4
Q ss_pred cccccccccccCchhHHH---hhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQE---LALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~---l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
++..+++.++.. .|.. +.+..+.++.++|.+|...|++++|.+.+++++++ .++++.. ..++|.++.
T Consensus 14 ~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~---~~~lg~~~~ 83 (126)
T 3upv_A 14 YFTKSDWPNAVK--AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRA---YIRKATAQI 83 (126)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHH
T ss_pred HHHhcCHHHHHH--HHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHH---HHHHHHHHH
Confidence 444566665522 2221 14445678999999999999999999999999986 4666654 589999998
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..|+.
T Consensus 84 ~~~~~ 88 (126)
T 3upv_A 84 AVKEY 88 (126)
T ss_dssp HTTCH
T ss_pred HHhCH
Confidence 77764
No 331
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.59 E-value=0.37 Score=55.95 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=47.6
Q ss_pred EEEEEcCCCCChhHHHH-HHHHHHhcCCC-EEEEEeCcCc--cHHHHHHHHHHHccCc-------cCcccCCcccccchh
Q 001919 466 IACVTGDSGIGKTELLL-EFAYRYHQRYK-MVLWVGGESR--YIRQNYLNLWSFLDVD-------VGIENCSDKSRIKSF 534 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~-~~~~~~~~~F~-~v~wi~~~~~--~~~~~l~~La~~L~~~-------~~~~~~~~~~~~~~~ 534 (996)
.++|.|.+|+|||+||. .+++... -+ .++++-...+ .+.+.+..+...=.+. ...++.. . .+
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~--~---r~ 237 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPAT--L---QY 237 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGG--G---TT
T ss_pred EEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHH--H---HH
Confidence 48999999999999976 5554432 34 3455544443 4444443332210010 1111110 0 00
Q ss_pred hhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001919 535 EEQEEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 535 ~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
......-.+-++++ .++.+|||+||+...
T Consensus 238 --~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 --LAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp --HHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred --HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11122334445553 688999999998753
No 332
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.57 E-value=0.15 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.55 E-value=0.14 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+++|+|+.|.|||||++.+...+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 699999999999999999987653
No 334
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.54 E-value=0.15 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 335
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.54 E-value=0.88 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+.|+|..|.|||.+|..++.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7889999999999999888765
No 336
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.53 E-value=0.83 Score=43.07 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
...++.++|.+|...|++++|..++++++++ .+++++..
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~ 118 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK 118 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 4567889999999999999999999999986 56777655
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.50 E-value=0.15 Score=53.65 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|+.|.|||||++.++..+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998865
No 338
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.46 E-value=0.79 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+++.|.|.+|.||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999998877654
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.46 E-value=0.15 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.|+|.|++|.||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 340
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.45 E-value=0.89 Score=44.59 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcC-----------CchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGG-----------QFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~G-----------r~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+| ++++|.++|++|+++ .|+++.-..++....+...+.-+|
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~~ka~el~~~~ 144 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMTAKAPQLHAEA 144 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhCHhccCcc
Confidence 4567889999999885 899999999999997 577887776666555555444333
No 341
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=90.40 E-value=0.52 Score=53.14 Aligned_cols=104 Identities=8% Similarity=-0.063 Sum_probs=61.1
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHhhhcchHHHHhhh-cccccccccccccCchhHHH---hhHhHHHHHHHHHHHHHhcCC
Q 001919 873 SRCSAALEL-LRLCTNALEAADHALVTPVEKLLDK-SLCWRPVQTNAQLNPSLWQE---LALTRATVLETRAKLMLRGGQ 947 (996)
Q Consensus 873 ~~~~~alel-l~~~~~~le~a~~~~~~~~~~~~~~-~l~~~~g~~~e~~~~~l~~~---l~~~~A~~l~~La~~y~~~Gr 947 (996)
+.+...++. +..+...++++..........|... .++...+++.+++. .++. +.+.-..++.++|.+|...|+
T Consensus 138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~--~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE--FIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH--HHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 444445554 6666666666655554444444322 22233455554421 1221 133345677888888888888
Q ss_pred chHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 001919 948 FDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRL 986 (996)
Q Consensus 948 ~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~ 986 (996)
+++|.+.|++++++ .+++++.. +++|.++..
T Consensus 216 ~~eAl~~~~~al~l-----~P~~~~a~---~~lg~~l~~ 246 (382)
T 2h6f_A 216 WDNELQYVDQLLKE-----DVRNNSVW---NQRYFVISN 246 (382)
T ss_dssp CTTHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHH
Confidence 88888888888885 45555544 888887766
No 342
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.36 E-value=0.84 Score=42.05 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
..++.++|.+|...|++++|..++++++++ .+++++..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 136 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHH
Confidence 556777888888888888888888888774 46666655
No 343
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.36 E-value=0.42 Score=53.45 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+|+|+|+.|+||||+++.++..+...-..+.+..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 58999999999999999999998765433444444
No 344
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.23 E-value=0.35 Score=53.63 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.+.|-||+||||+|..++..+...-..++-|+++..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 578899999999999999999998887778899988755
No 345
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.22 E-value=0.15 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+++|.|+.|.|||||++.++..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999987653
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.20 E-value=0.23 Score=54.37 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc-CCC-EEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ-RYK-MVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~-~v~wi~~~~~ 503 (996)
.+|+|.|+.|.|||||++.+...+.. ... .+.+++....
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 48999999999999999999887652 122 3556655443
No 347
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.17 E-value=0.15 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|+|.|++|.||||+|+.++.++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998864
No 348
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.14 E-value=0.53 Score=40.86 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHh-ccc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGED--HPDTIAARETLSKLTRLL-ANV 990 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~d--HpdTl~s~~nLA~~~r~~-~~~ 990 (996)
.++.++|.+|..+|++++|.+++++++++ .++ +++. ..+||.++... ++.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~---~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNKDV---WAAKADALRYIEGKE 93 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCHHH---HHHHHHHHTTCSSCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchHHH---HHHHHHHHHHHhCCH
Confidence 35668999999999999999999999985 344 5554 48888887665 543
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.13 E-value=0.13 Score=54.59 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|.|.|++|.||||+|+.++.++.. ..++++.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D 66 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGD 66 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecH
Confidence 47999999999999999999887642 34556543
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.12 E-value=0.086 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
+|+|.|+.|.||||+|+.++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988764
No 351
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.06 E-value=0.15 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+|+|.|++|.||||+|+.++.++.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 352
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.05 E-value=1.1 Score=49.98 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.+||.+|..+|+|++|..++.+++...... .+++..+.+..+++.++...++.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcH
Confidence 357788999999999999999999999999876654 57889999999999998877764
No 353
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.04 E-value=1.2 Score=42.62 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
.+.++.++|.+|...|+|++|...+.+++++ .++++.. +.++|.++...|
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a---~~~~g~~~~~~g 111 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR-----EETNEKA---LFRRAKARIAAW 111 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCcchHH---HHHHHHHHHHHh
Confidence 4567889999999999999999999999997 4666654 488888877655
No 354
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.03 E-value=1.1 Score=39.36 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRL 986 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~ 986 (996)
.++.++|.+|...|++++|..++++++.+ .++++.+. .+||.++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~---~~la~~~~~ 89 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAW---YNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHH---HHHHHHHHH
Confidence 35678999999999999999999999985 45566554 677776643
No 355
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.03 E-value=0.63 Score=54.03 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=49.4
Q ss_pred EEEEEcCCCCChhHHHH-HHHHHHhc------CCC-EEEEEeCcCc--cHHHHHHHHHHHccCccC--cccCCcccccch
Q 001919 466 IACVTGDSGIGKTELLL-EFAYRYHQ------RYK-MVLWVGGESR--YIRQNYLNLWSFLDVDVG--IENCSDKSRIKS 533 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~-~~~~~~~~------~F~-~v~wi~~~~~--~~~~~l~~La~~L~~~~~--~~~~~~~~~~~~ 533 (996)
.++|.|.+|+|||+||. .++++... +-+ .++++-...+ .+.+.+..+...=.+... .....+.. ..
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p--~~ 241 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA--AP 241 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC--HH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC--HH
Confidence 48999999999999976 55555441 234 3556655544 454544444331111100 00000000 00
Q ss_pred hhhcHHHHHHHHHHHHh-cCCCEEEEEcCCCCc
Q 001919 534 FEEQEEAAICRVRKELM-RNIPFLVIIDNLESE 565 (996)
Q Consensus 534 ~~~~~~~~~~~l~~~L~-~~~r~LLVLDdvd~~ 565 (996)
.........-.+-++++ .++.+|||+||+...
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 00001111223455563 578999999999753
No 356
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.01 E-value=0.36 Score=53.77 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHh--cCCCEEEEEeCcCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYH--QRYKMVLWVGGESR 503 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~--~~F~~v~wi~~~~~ 503 (996)
.+++.+.|-||+||||+|..++..+. ..-..++-|+++..
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 35899999999999999999999888 66677888988744
No 357
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.00 E-value=0.62 Score=44.46 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=53.7
Q ss_pred cccccccccccCchhHHHh---hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQEL---ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~l---~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
....|++.++.. .++.. .+.-..++.++|.+|..+|+|++|.+.|++++.+ .|++|+.. .+||.++.
T Consensus 31 ~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~---~~lg~~~~ 100 (148)
T 2vgx_A 31 QYQSGXYEDAHX--VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFP---FHAAECLL 100 (148)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHH---HHHHHHHH
T ss_pred HHHcCChHHHHH--HHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHH---HHHHHHHH
Confidence 444566666522 23322 3444667899999999999999999999999986 57888766 89999998
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..|+.
T Consensus 101 ~~g~~ 105 (148)
T 2vgx_A 101 QXGEL 105 (148)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 87764
No 358
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.95 E-value=0.17 Score=55.80 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.+|+|+|+.|+||||||..++.++. ..+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-----~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-----CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CcEEecc
Confidence 3699999999999999999988753 3455543
No 359
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.90 E-value=0.22 Score=51.94 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=31.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
|+|.|-||+||||+|..++..+...-..++-|+++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5669999999999999999998877667888887654
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.89 E-value=0.15 Score=58.66 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|+|.+|+||||++..++..+..+-..+..++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 47999999999999999999998765544577887664
No 361
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=89.88 E-value=0.85 Score=46.14 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHH--HHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPD--TIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpd--Tl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.++...|++++|.+.|++++++ +|+ ...+..+||.++...|+.
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999985 556 566779999988766543
No 362
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.84 E-value=1.3 Score=45.50 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTI 974 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl 974 (996)
..++.++|.+|...|++++|.+++++++.+ .++++...
T Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~ 148 (275)
T 1xnf_A 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRS 148 (275)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChHHH
Confidence 456788899999999999999999998874 56666444
No 363
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.78 E-value=0.16 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.|.|+|++|+|||++|+.+++.+.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998874
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.75 E-value=0.14 Score=52.66 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.+.|+|++|.|||++|..+++.+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999987643
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.73 E-value=0.19 Score=55.20 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGE 501 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~ 501 (996)
.+|+|.|+.|.|||||++.++..+.... ..+.+|.-.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 4899999999999999999988765321 235566543
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.72 E-value=0.18 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~ 486 (996)
.+|+|.|+.|.||||+++.++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 367
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=89.69 E-value=0.78 Score=45.59 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
..++.++|.+|..+|++++|.+.+++++++ .+++++.. .+|+.++...++
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~~~ 171 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIR---NSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHH---HHHHHHHHHHHH
Confidence 356778999999999999999999999986 46666655 777777766543
No 368
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.63 E-value=1.8 Score=38.97 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSK 982 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~ 982 (996)
..++..+|.+|..+|++++|.+.+++++.. .++++....++.+||.
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHH
Confidence 356678999999999999999999999985 5777444444455553
No 369
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.61 E-value=0.54 Score=50.22 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFI 961 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~i 961 (996)
..++.++|.+|..+|++++|..++++++++
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666666666666666666666664
No 370
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.59 E-value=0.17 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.+.|+|++|+|||+||+.+++.+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988743
No 371
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=89.52 E-value=0.94 Score=44.95 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|...|+|++|...+++++.+ .++++. +..++|.++...++.
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~~~~~ 138 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNNVK---ALYKLGVANMYFGFL 138 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcccHH---HHHHHHHHHHHcccH
Confidence 3567899999999999999999999999996 455554 558899888776653
No 372
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.52 E-value=0.37 Score=55.28 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhc---------CC-C-EEEEEeCcCc--cHHHHHHHHHHH--ccC-----ccCcccC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQ---------RY-K-MVLWVGGESR--YIRQNYLNLWSF--LDV-----DVGIENC 525 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~---------~F-~-~v~wi~~~~~--~~~~~l~~La~~--L~~-----~~~~~~~ 525 (996)
.++|.|.+|+|||+|+.++++.... +. + .++++-...+ .+.+.+..+... +.. ....++.
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 3789999999999999999886442 11 2 4556655544 444444444331 110 0011110
Q ss_pred CcccccchhhhcHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Q 001919 526 SDKSRIKSFEEQEEAAICRVRKELM--RNIPFLVIIDNLES 564 (996)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~L~--~~~r~LLVLDdvd~ 564 (996)
. .........-.+.++++ .++.+||++||+..
T Consensus 229 -----~--~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 229 -----I--ERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp -----H--HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred -----H--HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0 00011122334566674 37899999999975
No 373
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.51 E-value=0.54 Score=51.75 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++...|-||+||||+|..++..+...-..++-|+++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 477888999999999999999988877667888887754
No 374
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.43 E-value=0.16 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|+|+.|.|||||++.++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 379999999999999999998765
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.43 E-value=0.22 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|.|.|+||.||||+|..++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 376
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=89.34 E-value=1.4 Score=44.68 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.++.++|.+|...|++++|.+++++++++.... +++++....+..+||.++...++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccH
Confidence 356789999999999999999999999986554 567777788889999999877654
No 377
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.30 E-value=0.2 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
+++|+|+.|+|||||.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998764
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.24 E-value=0.15 Score=56.43 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.+|+|.|+.|+||||||..++.++ . .-+|++++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----~-~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----P-LEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----C-EEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----C-CcEEccccc
Confidence 479999999999999999988754 3 345766543
No 379
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.21 E-value=0.13 Score=60.36 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred hhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 432 IEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 432 ~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
..++|++..++.+.. .+. ..+-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~------al~-------~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLL------AAL-------SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHH------HHH-------HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHH------HHh-------cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 457788877776652 010 112489999999999999999988653
No 380
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.20 E-value=1.7 Score=43.66 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
....++|.+|..+|++++|...|++++++ .|++++.. .+||.++...|+.
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~lg~~~~~~g~~ 104 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQK-----APNNVDCL---EACAEMQVCRGQE 104 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHH---HHHHHHHHHcCCH
Confidence 34567999999999999999999999996 56676655 8999998877764
No 381
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=89.14 E-value=0.58 Score=41.22 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRT 963 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~ 963 (996)
.++.++|.+|..+|+|++|.+.+++++++.-
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 38 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP 38 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4456677777777777777777777776644
No 382
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.13 E-value=0.57 Score=49.74 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDH-PDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dH-pdTl~s~~nLA~~~r~~~~~ 990 (996)
...++.++|.+|...|++++|..++++++.+..+.-+..+ |....+..+||.++...|+.
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 3567889999999999999999999999999877655433 33344568888888777654
No 383
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.11 E-value=0.18 Score=51.41 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHH
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
...|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998764
No 384
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.10 E-value=0.16 Score=55.19 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc-CCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ-RYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~-~F~~v~wi~~~~ 502 (996)
.+|+|.|..|.||||+|+.+...+.. .+ .+..++.+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~-~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGV-KAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCC-CeeEeecch
Confidence 47999999999999999999886642 22 244565443
No 385
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=89.09 E-value=0.73 Score=53.10 Aligned_cols=31 Identities=3% Similarity=-0.051 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHH-HHHHHH
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDD-LIRKAV 959 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~-l~~~aL 959 (996)
+....++.+++.++...|++++|+. +|++.+
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999888874 444443
No 386
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.08 E-value=0.19 Score=54.94 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|.|+.|+||||||..++.++. ...|++++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 4799999999999999999987642 34565543
No 387
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.04 E-value=1.3 Score=45.58 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCccHHHHHHHHHHHccCccCcccCCcccccchhhhcHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESRYIRQNYLNLWSFLDVDVGIENCSDKSRIKSFEEQEEAAICR 544 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~~~~~~l~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (996)
.+..++|.-|.||||.+...+++...+-..++.+...- ..+.+-..+...+++........ +.. .
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~-d~R~ge~~i~s~~g~~~~a~~~~----------~~~----~ 93 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI-DNRYSEEDVVSHNGLKVKAVPVS----------ASK----D 93 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECS----------SGG----G
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc-CCcchHHHHHhhcCCeeEEeecC----------CHH----H
Confidence 47899999999999999999998876654444443111 11112223444454433211100 010 1
Q ss_pred HHHHHhcCCCEEEEEcCCCCcccccchHHHhhhccCCCCCeEEEEEecCCCc
Q 001919 545 VRKELMRNIPFLVIIDNLESEKDWWDDKLVMDLLPRFGGETHIIISTRLPRV 596 (996)
Q Consensus 545 l~~~L~~~~r~LLVLDdvd~~~~~~~~~~L~~~lp~~~~gsrIIITTR~~~~ 596 (996)
+.+.+ .++--+|++|.+.-...- ..+++..+.+ .|..||+|-++...
T Consensus 94 ~~~~~-~~~~dvViIDEaQF~~~~-~V~~l~~l~~---~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 94 IFKHI-TEEMDVIAIDEVQFFDGD-IVEVVQVLAN---RGYRVIVAGLDQDF 140 (214)
T ss_dssp GGGGC-CSSCCEEEECCGGGSCTT-HHHHHHHHHH---TTCEEEEEECSBCT
T ss_pred HHHHH-hcCCCEEEEECcccCCHH-HHHHHHHHhh---CCCEEEEEeccccc
Confidence 12222 222338999998764210 0033333334 36799999997554
No 388
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.01 E-value=1.4 Score=49.32 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
.+.++.++|.+|..+|+|++|.+++++++++ .++++. ++.++|.++...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---a~~~lg~~~~~~g 321 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTK---ALYRRAQGWQGLK 321 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CchhHH---HHHHHHHHHHHcc
Confidence 4556778888888888888888888888874 344444 3477777765543
No 389
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=88.95 E-value=0.69 Score=51.05 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
..++.++|.+|...|++++|.+++++++++ .++++++. ++||.++...|+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~g~ 320 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSL---NNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHH---HHHHHHHHHcCC
Confidence 445666666666667777777776666664 34555444 566666655544
No 390
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.89 E-value=0.24 Score=53.63 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
+|.|.|++|.||||+|+.++.++ .+..+++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~ 33 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN----PGFYNIN 33 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----TTEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC----CCcEEec
Confidence 69999999999999999988742 2345663
No 391
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.88 E-value=0.31 Score=52.03 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
..+++|+|+.|.|||||.+.++..+...+.+.+++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 358999999999999999999887655444444443
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.86 E-value=0.2 Score=54.12 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFA 485 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~ 485 (996)
.+|+|.|++|.||||+|+.++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.85 E-value=0.27 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||.+.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999998876
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.81 E-value=0.37 Score=53.79 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
..+|+|+|.+|+|||||+..++..+...-..+.-++++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 35899999999999999999998876554445555544
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.78 E-value=0.56 Score=48.91 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYK 493 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~ 493 (996)
.+|+|.|++|.||||+++.++..+...++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~ 55 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYD 55 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999998765333
No 396
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.74 E-value=0.23 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|.|+.|+||||||..++.++. ..+|++++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 4799999999999999999988742 34566543
No 397
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.71 E-value=0.76 Score=45.59 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcchHHHHh-hhcccccc-cccccccCchhHHHh-----hHhHHHHHHHHHHHHHhc
Q 001919 873 SRCSAALELLRLCTNALEAADHALVTPVEKLL-DKSLCWRP-VQTNAQLNPSLWQEL-----ALTRATVLETRAKLMLRG 945 (996)
Q Consensus 873 ~~~~~alell~~~~~~le~a~~~~~~~~~~~~-~~~l~~~~-g~~~e~~~~~l~~~l-----~~~~A~~l~~La~~y~~~ 945 (996)
+.+....+.+..+...++++..........+. .+..+... ++..++.. .++.. .+....++.++|.+|...
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA--YFDKALADPTYPTPYIANLNKGICSAKQ 126 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH--HHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH--HHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence 34444444555566666655544333222221 22223334 44444321 22221 123356678888888888
Q ss_pred CCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 946 GQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 946 Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
|++++|.+++++++.. .++++.. ..+||.++...++.
T Consensus 127 ~~~~~A~~~~~~~~~~-----~~~~~~~---~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 127 GQFGLAEAYLKRSLAA-----QPQFPPA---FKELARTKMLAGQL 163 (225)
T ss_dssp TCHHHHHHHHHHHHHH-----STTCHHH---HHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHh-----CCCCchH---HHHHHHHHHHcCCH
Confidence 8888888888888774 3555544 47777777666553
No 398
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.70 E-value=0.25 Score=54.41 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC--CEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY--KMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F--~~v~wi~~~~ 502 (996)
.+|||.|++|.|||||++.+...+.... ..+..+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 4899999999999999999887665321 2355555443
No 399
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.70 E-value=0.22 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+++|+|+.|.|||||.+.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4899999999999999999988764
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.68 E-value=0.31 Score=58.56 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=38.5
Q ss_pred cchhccccchHhhhhhhhcCCCCccccccccccCceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 430 KEIEMQSTEAPQRQKTKSSGRYPRRKRSTKILYGKGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 430 ~~~~fvGR~~el~~l~~~~~~~~~l~~~~~~~~~~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.-..++|.+..++.+.. .+. ....++|+|++|+||||||+.++..+.....+.+.+
T Consensus 39 ~l~~i~G~~~~l~~l~~------~i~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKT------AAN-------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHHHCCSCHHHHHHHHH------HHH-------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred ccceEECchhhHhhccc------ccc-------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 34578888877777662 011 113689999999999999999998765444333333
No 401
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.64 E-value=0.26 Score=57.29 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKL 983 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~ 983 (996)
+..+.++.++|.+|..+|++++|++.+++++++ .+++++. ..+|+.+
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~---~~~l~~~ 117 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDA---KMKYQEC 117 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHH
Confidence 344678899999999999999999999999986 4555554 4677776
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.61 E-value=0.44 Score=48.66 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..+|+|+|.+|+|||||+..+.......+. +.-+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i~~ 65 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAMLG 65 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEEec
Confidence 357999999999999999999987655543 333443
No 403
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=88.59 E-value=2.3 Score=36.86 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLT 984 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~ 984 (996)
.++.++|.+|...|++++|..++++++.+ .++++... .++|.++
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~---~~~a~~~ 82 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGY---SRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccHHHH---HHHHHHH
Confidence 45678999999999999999999999986 46676655 5555544
No 404
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=88.58 E-value=1.4 Score=43.17 Aligned_cols=35 Identities=14% Similarity=-0.026 Sum_probs=30.1
Q ss_pred HHHHH----HHHHHHHHhcCCchHHHHHHHHHHHHHhhc
Q 001919 931 RATVL----ETRAKLMLRGGQFDMGDDLIRKAVFIRTSI 965 (996)
Q Consensus 931 ~A~~l----~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~ 965 (996)
.+.++ +++|.+|...|+++||.+.|++++++--.-
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 44555 999999999999999999999999985443
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.56 E-value=0.41 Score=47.81 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
.+++|.|..|.|||||+..+...+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 479999999999999999999876543
No 406
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=88.51 E-value=1 Score=44.73 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSIS--------GEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~L--------G~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.++.++|.+|...|++++|.+.+++++++....- ...+|....+..+||.++...|+.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 45678999999999999999999999998632210 013456667779999998777654
No 407
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=88.51 E-value=1.9 Score=43.45 Aligned_cols=56 Identities=4% Similarity=-0.178 Sum_probs=42.7
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHhcc
Q 001919 929 LTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDT----IAARETLSKLTRLLAN 989 (996)
Q Consensus 929 ~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdT----l~s~~nLA~~~r~~~~ 989 (996)
+....++.++|.+|..+|++++|.+.+++++++ .++++.. ..+..++|.++...++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 445678899999999999999999999999986 4677744 2345666766655544
No 408
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.51 E-value=0.95 Score=42.38 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=53.4
Q ss_pred cccccccccccCchhHHHh---hHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQEL---ALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~l---~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
+...+++.++.. .++.. .+....++.++|.+|..+|++++|...|++++.+ .|++|+.. .+||.++.
T Consensus 28 ~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~lg~~~~ 97 (142)
T 2xcb_A 28 QYQAGKWDDAQK--IFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINEPRFP---FHAAECHL 97 (142)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHH---HHHHHHHH
T ss_pred HHHHccHHHHHH--HHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH---HHHHHHHH
Confidence 344566665522 22222 4445667899999999999999999999999985 57888766 89999988
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..|+.
T Consensus 98 ~~g~~ 102 (142)
T 2xcb_A 98 QLGDL 102 (142)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 87764
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.49 E-value=0.16 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCChhHHHHHHH-HHH
Q 001919 465 GIACVTGDSGIGKTELLLEFA-YRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~-~~~ 488 (996)
.+++|+|+.|.|||||++.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988 654
No 410
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.48 E-value=1.2 Score=51.47 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|++++|.+.|++++++ .+++++.. .+|+.++...++.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~---~~l~~~~~~lg~~ 308 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEPQ---QREQQLLEFLSRL 308 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHHHH
Confidence 4567889999999999999999999999996 46676554 7777777766654
No 411
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.40 E-value=0.53 Score=52.43 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.+.|-||+||||+|..++..+...-..++-|+++-.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 467788999999999999999988877667888887653
No 412
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.33 E-value=0.42 Score=49.03 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR 491 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~ 491 (996)
..|+|+|.+|+|||||+..++......
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 578999999999999999999875544
No 413
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=88.25 E-value=0.52 Score=53.14 Aligned_cols=112 Identities=9% Similarity=-0.084 Sum_probs=73.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhhcc-cccccccccccCchhHHH--hhHhHHHHHHHHHHHHHh-
Q 001919 869 FITFSRCSAALELLRLCTNALEAADHALVTPVEKLLDKSL-CWRPVQTNAQLNPSLWQE--LALTRATVLETRAKLMLR- 944 (996)
Q Consensus 869 ~~~~~~~~~alell~~~~~~le~a~~~~~~~~~~~~~~~l-~~~~g~~~e~~~~~l~~~--l~~~~A~~l~~La~~y~~- 944 (996)
|...+.+...++.+..+...++++.+........|..... +...+++.+++.. .-+. +.+.-..+++++|.+|..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~-~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY-VDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH-HHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3334555556666666777777776655554444433222 2234566554221 1111 244456789999999999
Q ss_pred cCCchHH-----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 945 GGQFDMG-----DDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 945 ~Gr~~eA-----e~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.|++++| .++|++++++ +|+-..+.++|+.++...|.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred cCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence 6666888 5899999986 99999999999999976553
No 414
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=88.21 E-value=1 Score=43.17 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=52.5
Q ss_pred cccccccccccCchhHHH---hhHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 001919 909 CWRPVQTNAQLNPSLWQE---LALTRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTR 985 (996)
Q Consensus 909 ~~~~g~~~e~~~~~l~~~---l~~~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r 985 (996)
++..+++.++.. .|+. +.+..+.++.++|.+|..+|+|++|.+.+++++++ .++++.. ..+||.++.
T Consensus 21 ~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~lg~~~~ 90 (164)
T 3sz7_A 21 AMARKEYSKAID--LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYSKA---WSRLGLARF 90 (164)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHH
T ss_pred HHHcCCHHHHHH--HHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHH
Confidence 445566665522 2222 14455778899999999999999999999999997 4556554 489999998
Q ss_pred Hhccc
Q 001919 986 LLANV 990 (996)
Q Consensus 986 ~~~~~ 990 (996)
..++.
T Consensus 91 ~~g~~ 95 (164)
T 3sz7_A 91 DMADY 95 (164)
T ss_dssp HTTCH
T ss_pred HccCH
Confidence 87764
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.12 E-value=0.29 Score=51.08 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|+|.|+.|.||||+++.++.++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 379999999999999999998876
No 416
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.03 E-value=0.49 Score=54.75 Aligned_cols=56 Identities=5% Similarity=-0.120 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRG--------GQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~--------Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|..+ |++++|.+.|++++++ .+.+++...+..+||.++...|+.
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHHHcCCH
Confidence 3456789999999999 9999999999999997 341224555669999999887764
No 417
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.02 E-value=0.6 Score=51.53 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++.+.|-||+||||+|..++..+...-..+.-|+++..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 467788999999999999999998877667888887654
No 418
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.97 E-value=1 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|+|+.|.|||||++.++.-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998764
No 419
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.91 E-value=0.23 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.|+|+|++|.||||+++.++..+...|
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 589999999999999999998766444
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.84 E-value=0.31 Score=55.15 Aligned_cols=33 Identities=21% Similarity=0.568 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.+|+|.|+.|+||||||..++.++.. -.|++++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence 47999999999999999999987642 2466544
No 421
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=87.78 E-value=1.3 Score=45.25 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..+.++.++|.+|...|++++|.++++++++. .++++... .+||.++...++.
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~---~~la~~~~~~g~~ 191 (252)
T 2ho1_A 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPSVA---LEMADLLYKEREY 191 (252)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHH---HHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcccHHHH---HHHHHHHHHcCCH
Confidence 35678899999999999999999999999986 46666554 8899888777654
No 422
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=87.73 E-value=1.1 Score=48.94 Aligned_cols=30 Identities=7% Similarity=-0.086 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFI 961 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~i 961 (996)
+.++.++|.+|..+|++++|.+++++++.+
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 344555556666666666666666555553
No 423
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.73 E-value=0.74 Score=50.78 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
....++.++|.+|..+|++++|.++|++++++ .|++++ +..+|+.++...+
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFAD---AYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTCHH---HHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHhHHHHHHHcc
Confidence 34567889999999999999999999999974 455555 5589998886554
No 424
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.72 E-value=0.3 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQ 490 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~ 490 (996)
.+|+|.|+.|.||||+|+.++.++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 37999999999999999999998853
No 425
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.59 E-value=2.4 Score=42.83 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSK 982 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~ 982 (996)
..++.++|.+|..+|++++|.+.+++++++..+.- +.|+.......|+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 45566777777777777777777777777654432 33444444455544
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.45 E-value=0.28 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
+++|.|+.|.|||||.+.++--
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998865
No 427
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.32 E-value=2.4 Score=43.00 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.|+|-|+-|.||||.++.++..+..+...+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999999877654445443
No 428
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.27 E-value=0.59 Score=48.55 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.0
Q ss_pred eEEEEEc-CCCCChhHHHHHHHHHHhcC-CCEEEEEeCcC
Q 001919 465 GIACVTG-DSGIGKTELLLEFAYRYHQR-YKMVLWVGGES 502 (996)
Q Consensus 465 ~vV~I~G-~gGIGKTtLA~~~~~~~~~~-F~~v~wi~~~~ 502 (996)
++|+|++ -||+||||+|..++..+... -..++.|+++.
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 4677764 69999999999999998876 56788888763
No 429
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.20 E-value=0.56 Score=56.10 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+++.+.|-||+||||+|..++..+...-..++.|+++-.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 578999999999999999999988877667888887744
No 430
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.15 E-value=0.58 Score=48.43 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.4
Q ss_pred EEEEEc-CCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 466 IACVTG-DSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~G-~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
+|+|+| -||+||||+|..++..+..+-..++.|+++.
T Consensus 4 ~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 566654 7999999999999998887666788888764
No 431
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.10 E-value=0.22 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
|.|+|++|+|||+||+.+++...
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999998764
No 432
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.09 E-value=0.64 Score=54.87 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLL 987 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~ 987 (996)
.+.++.++|.+|..+|++++|.+++++++++ .+++++. +.+||.++...
T Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~~~~~~~ 138 (568)
T 2vsy_A 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LPEEPYI---TAQLLNWRRRL 138 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHh
Confidence 4567889999999999999999999999986 4566654 48899888777
No 433
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.04 E-value=0.9 Score=40.55 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+..+..+|.+|...|++++|..++++++.. .++++. +..++|.++...++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~---~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMT---YITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHH---HHHHHHHHHHHhccH
Confidence 4667889999999999999999999999986 355554 458888888776654
No 434
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.02 E-value=1.3 Score=43.41 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCch----------HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhc
Q 001919 931 RATVLETRAKLMLRGGQFD----------MGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLA 988 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~----------eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~ 988 (996)
.+.++.++|.++...|+++ +|...|++|+++ .|++++.. +|||.+|..+|
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~---~~LG~ay~~lg 94 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAV---WCIGNAYTSFA 94 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHH---HHHHHHHHHhc
Confidence 4567888999999998865 999999999996 56676665 89999998765
No 435
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.95 E-value=0.31 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 467 ACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
|.|+|++|+|||++|+.++..+...|
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 88999999999999999999875544
No 436
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.94 E-value=0.48 Score=53.25 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=31.7
Q ss_pred ceEEEEEc-CCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 464 KGIACVTG-DSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 464 ~~vV~I~G-~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
.++|+|+| -||+||||+|..++..+...-..++.|+++
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35788875 899999999999999887765578889877
No 437
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.89 E-value=0.33 Score=51.09 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+++|.|+.|.|||||.+.++--+. ...+.+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 5899999999999999999775432 22355555
No 438
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=86.86 E-value=1 Score=52.72 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLNL 512 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~L 512 (996)
.++|.|..|+|||+|+.++++.. +-+.++++-+..+ .+.+.+..+
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred eEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999999999987652 3356778877665 455554443
No 439
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.82 E-value=0.33 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
+|+|.|+.|.||||+++.++.++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999998875
No 440
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.80 E-value=0.54 Score=55.36 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.+|.++|++|.||||+|+.++..+...|
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4799999999999999999999876555
No 441
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.69 E-value=1.4 Score=57.67 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
..++|+|+.|.|||||+..+...+ +...+.+.++
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~id 478 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY-DVLKGKITID 478 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEET
T ss_pred cEEEEEecCCCcHHHHHHHhcccc-ccccCcccCC
Confidence 479999999999999999865432 2223555443
No 442
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.69 E-value=0.62 Score=48.88 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=30.5
Q ss_pred EEEEE-cCCCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 466 IACVT-GDSGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 466 vV~I~-G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
+|+|+ +-||+||||+|..++..+..+-..++-|+++.
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 56675 47999999999999998887656788888775
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.68 E-value=0.27 Score=56.25 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+|.|+|++|.||||+|+.++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999987654
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.62 E-value=0.36 Score=48.35 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.|+|.|.+|+|||||...+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998874
No 445
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.61 E-value=3.3 Score=37.88 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAAR 977 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~ 977 (996)
..++.++|.+|...|++++|.+++++++.+ .+++++....+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 105 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEK-----DGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CccCHHHHHHH
Confidence 456788999999999999999999999986 46677765433
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.58 E-value=0.3 Score=51.23 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEEC
Confidence 4899999999999999998764322 234555554
No 447
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.53 E-value=0.23 Score=49.51 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=27.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-C-CEEEEEeCc
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQR-Y-KMVLWVGGE 501 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F-~~v~wi~~~ 501 (996)
+|+|+|..|.|||||++.+...+... + .+.+.++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 69999999999999999998877654 3 366666543
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.52 E-value=0.29 Score=50.91 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 64 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLE 64 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEC
Confidence 4899999999999999998765322 234555554
No 449
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=86.52 E-value=1.1 Score=52.68 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc--cHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR--YIRQNYLN 511 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~--~~~~~l~~ 511 (996)
.++|.|..|+|||+|+.++++.. +-+.++|+-+..+ .+.+.+..
T Consensus 234 r~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 234 AAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS--SCSEEEEEEEEECHHHHHHHHHH
T ss_pred EEeeecCCCccHHHHHHHHHhcc--CCCEEEEEEecccHHHHHHHHHH
Confidence 58999999999999999998763 2356777766654 44444433
No 450
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=86.50 E-value=0.94 Score=41.39 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 934 VLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 934 ~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
++.++|.+|..+|++++|...+++++.+ .++++. +..+||.++...++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 45 YYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVK---AHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhHH---HHHHHHHHHHHHhhH
Confidence 3688899999999999999999999885 355555 448888888777654
No 451
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.50 E-value=1.2 Score=45.98 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcC-CCEE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQR-YKMV 495 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v 495 (996)
.+|+|.|+.|.||||++..++..+... ++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 379999999999999999999988754 4543
No 452
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.38 E-value=0.89 Score=50.71 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh--cCCCEEEEEeCcCc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH--QRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~--~~F~~v~wi~~~~~ 503 (996)
.++...|-||+||||+|..++..+. ..-..++-|+++-.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4677789999999999999999988 66667888887654
No 453
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=86.33 E-value=7.7 Score=37.96 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGE-DHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~-dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
...++..+|.+|...|++++|.+++++++.. .+ +++... ..++.++...++.
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSR-----VEVLQADDL---LLGWKIAKALGNA 198 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCSCCHHHH---HHHHHHHHHTTCH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHH---HHHHHHHHhcCcH
Confidence 3567889999999999999999999999985 34 677765 5666666655543
No 454
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=86.26 E-value=3.4 Score=36.45 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.++.++|.+|...|++++|..++++++.. .++++.+. .++|.++...++
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~---~~la~~~~~~~~ 118 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAW---YNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHH---HHHHHHHHHHcc
Confidence 34567788888888888888888888874 34455443 667776655444
No 455
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=86.23 E-value=4.2 Score=43.78 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 930 TRATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 930 ~~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
....++.++|.+|...|++++|.+++++++++ .++++. +..+||.++...|+.
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~---~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGYIR---SRYNLGISCINLGAH 301 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHCCCH
Confidence 34567899999999999999999999999986 345554 458999988777664
No 456
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.16 E-value=1.4 Score=39.32 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSI--SGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~--LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.-...+|..+..+|+|..|...+++|+.....- .|...+++. ++||.++.-.|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~---~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVL---DYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHH---HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHH---HHHHHHHHHccCH
Confidence 344679999999999999999999999876433 355556555 9999999888765
No 457
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.13 E-value=0.29 Score=51.85 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+... +.++++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 389999999999999999987654433 555554
No 458
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=86.12 E-value=1.7 Score=45.03 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH-Hh--cCC--CEEEEEeCcCccHHHHHHHHHHHcc
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR-YH--QRY--KMVLWVGGESRYIRQNYLNLWSFLD 517 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~-~~--~~F--~~v~wi~~~~~~~~~~l~~La~~L~ 517 (996)
..++|.|..|.||||+...+... .. ... ..++++.-......+....++..++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 36999999999999877665543 22 121 2555553222122334445555444
No 459
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=86.09 E-value=0.69 Score=53.70 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
+.++.++|.+|..+|+|++|.+++++++++ +|+...+..+||.++...++.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence 457788999999999999999999999986 344445668999998877653
No 460
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.03 E-value=1.9 Score=52.38 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
.+.++.++|.+|..+|+|++ ++.|++++++ .+++++ +..|||.++...|+.
T Consensus 500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----~P~~~~---a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 500 ELAPKLALAATAELAGNTDE-HKFYQTVWST-----NDGVIS---AAFGLARARSAEGDR 550 (681)
T ss_dssp CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----CTTCHH---HHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----CCchHH---HHHHHHHHHHHcCCH
Confidence 35577899999999999999 9999999985 566665 458999998877764
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.02 E-value=1.3 Score=57.97 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
..|+|+|..|.|||||+..+.. +-+-..+.+.|++
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG 1140 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER-FYDTLGGEIFIDG 1140 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETT
T ss_pred CEEEEECCCCChHHHHHHHHhc-CccCCCCEEEECC
Confidence 3699999999999999998764 2222345555543
No 462
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=86.01 E-value=3.2 Score=36.69 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Q 001919 933 TVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLAN 989 (996)
Q Consensus 933 ~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~ 989 (996)
.++.++|.+|...|++++|..++++++.. +++++.. ..++|.++...++
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~---~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEA---WYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCchHH---HHHHHHHHHHhcC
Confidence 35667999999999999999999999875 4555554 4778887766554
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.90 E-value=0.44 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHh
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYH 489 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~ 489 (996)
.+|+|.|+.|.||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999998764
No 464
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.85 E-value=0.35 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|+|+.|.|||||.+.++.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999987643
No 465
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.84 E-value=2.2 Score=43.89 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=27.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcC-CCEEEEEe
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQR-YKMVLWVG 499 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~-F~~v~wi~ 499 (996)
+|+|-|+.|.||||++..++..+... +..+.+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r 39 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence 79999999999999999999987654 43444443
No 466
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.82 E-value=0.4 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 467
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.79 E-value=0.88 Score=46.52 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.8
Q ss_pred EEEE-EcCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 466 IACV-TGDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I-~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+| .+-||+||||+|..++..+...- .++-|+++..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 3555 57899999999999999888776 8899988765
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.79 E-value=0.41 Score=48.15 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.|+|.|.+|+|||||...+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
No 469
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.78 E-value=0.35 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 66 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVN 66 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 4899999999999999998765332 234666664
No 470
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=85.78 E-value=4.9 Score=35.54 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhh
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTS 964 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~ 964 (996)
..++.++|.+|...|++++|...+++++++...
T Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 345678999999999999999999999998543
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.78 E-value=0.43 Score=46.38 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~ 486 (996)
.|+|.|.+|+|||||...+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 472
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.77 E-value=2.2 Score=44.91 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHHHHhccc
Q 001919 931 RATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPD----TIAARETLSKLTRLLANV 990 (996)
Q Consensus 931 ~A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpd----Tl~s~~nLA~~~r~~~~~ 990 (996)
...++.++|.+|...|++++|.+++++++.+....-+..+.. ...+..+||.++...|+.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 355788999999999999999999999999865543333322 566778999998887764
No 473
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.74 E-value=4.1 Score=56.73 Aligned_cols=89 Identities=6% Similarity=-0.009 Sum_probs=52.9
Q ss_pred ceeEeeccCCCccccchHHHHHHHHHHcCCceeecCccccCCCCcHHHHHHHhhcceEEEEEEcCCCCcCcccHHHHHhh
Q 001919 161 CDVFIGLHGCKPSLMRFANWLRAELEVQGMSCFVSDRARCRNSRKHAIVERAMDISSFGVVILTRKSFRNPYSIEELRYF 240 (996)
Q Consensus 161 ~dVFlsfrG~d~~r~~F~~hL~~~L~~~gI~~F~dd~~~~~~~~~~~~~~~ai~~S~i~ivv~S~nya~S~wCL~EL~~i 240 (996)
.|+|.+..=+. ....|...+.+++.+.|+..- +.-.. .-..|.+++. .+-+|++.-+...-=+=|+.=|.+.
T Consensus 875 ~dlFp~~~~~~-~~~~l~~~i~~~~~~~~l~~~--~~~~~----K~~ql~e~~~-~r~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 875 SKIFDSAGTPL-NSKAIVQCLKDAGQRSGFSMS--EEFLK----KCMQFYYMQK-TQQALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp HHHCCCCSCCS-SSSHHHHHHHHHHHHHTCCCC--HHHHH----HHHHHHHHHH-HCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCCCCCCC-ChHHHHHHHHHHHHHcCCccc--HHHHH----HHHHHHHHHH-hcceEEEECCCCCCHHHHHHHHHHH
Confidence 46666554221 124688888888888887531 11000 0112334444 5778899988887777788888877
Q ss_pred hcC-CceEeeeecCCCCc
Q 001919 241 SGK-KNLVPIFFDLSPGD 257 (996)
Q Consensus 241 ~~~-~~v~PvFy~vdPs~ 257 (996)
+.. ...-.+.|.++|..
T Consensus 947 l~~l~~~~~~~~~inpk~ 964 (2695)
T 4akg_A 947 MAIFDGHANVVYVIDTKV 964 (2695)
T ss_dssp HHHHTCCEEEEEEECTTT
T ss_pred HHHhcCCCceEEEeCCCC
Confidence 542 12224567778875
No 474
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.71 E-value=0.35 Score=52.02 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~ 68 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFD 68 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEEC
Confidence 4899999999999999998765332 234555553
No 475
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.70 E-value=0.64 Score=50.11 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEEc---CCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 466 IACVTG---DSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 466 vV~I~G---~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
+|+|++ -||+||||+|..++..+...-..++-|+++..
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 567775 89999999999999988766557888887655
No 476
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.60 E-value=0.42 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 477
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=85.59 E-value=1.5 Score=51.36 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDT-IAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdT-l~s~~nLA~~~r~~~~~ 990 (996)
..+++.+|.+|...|++++|.+++++++++.... +.+|+. ..+..+|+.++...|+.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCH
Confidence 4568899999999999999999999999986653 334543 66779999999888765
No 478
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.57 E-value=0.66 Score=49.16 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=31.2
Q ss_pred eEEEEE-cCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVT-GDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~-G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
++|+|+ |-||+||||+|..++..+. +-..++-|+++..
T Consensus 28 ~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp EEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 467774 5899999999999999988 6567888887755
No 479
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=85.55 E-value=1.5 Score=39.30 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccc
Q 001919 932 ATVLETRAKLMLRGGQFDMGDDLIRKAVFIRTSISGEDHPDTIAARETLSKLTRLLANV 990 (996)
Q Consensus 932 A~~l~~La~~y~~~Gr~~eAe~l~~~aL~ir~~~LG~dHpdTl~s~~nLA~~~r~~~~~ 990 (996)
..++.++|.+|...|++++|.+++++++.+ .++++... .++|.++...++.
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~---~~la~~~~~~~~~ 100 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTFIKGY---TRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTCHHHH---HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCchHHH---HHHHHHHHHHhhH
Confidence 346778999999999999999999999986 45666554 8888888776653
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.55 E-value=0.36 Score=51.65 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEE
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWV 498 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi 498 (996)
.+++|.|+.|.|||||.+.++--+. ...+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEE
Confidence 4899999999999999998875332 22344444
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.50 E-value=0.37 Score=50.72 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 66 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFN 66 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEC
Confidence 4899999999999999998765332 234666664
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.49 E-value=0.36 Score=47.90 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 001919 467 ACVTGDSGIGKTELLLEFAY 486 (996)
Q Consensus 467 V~I~G~gGIGKTtLA~~~~~ 486 (996)
|+|+|.+|+|||||...+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999998875
No 483
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.48 E-value=0.63 Score=54.01 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRY 492 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F 492 (996)
.+|.++|++|.||||+++.++..+...|
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3789999999999999999999877655
No 484
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.34 E-value=0.39 Score=47.86 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
-|.|.|.+|+||||||.++..+
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999999999875
No 485
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.31 E-value=0.38 Score=51.20 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 4899999999999999999875432 224555554
No 486
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.24 E-value=0.39 Score=51.36 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVG 499 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~ 499 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~ 84 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIID 84 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEEC
Confidence 4899999999999999998775432 223555553
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.20 E-value=1.1 Score=53.63 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+++|+|+.|.|||||++.+..-+ ....+.+.++.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g 404 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDE 404 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECC
Confidence 489999999999999999876432 22345555543
No 488
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.16 E-value=0.83 Score=48.92 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=33.4
Q ss_pred ceEEEEEc-CCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 464 KGIACVTG-DSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 464 ~~vV~I~G-~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
.++|+|+| .||+||||+|..++..+...-..++.|+++-.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35788887 59999999999999988877678899988744
No 489
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.08 E-value=0.59 Score=49.36 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=32.1
Q ss_pred eEEEEE-cCCCCChhHHHHHHHHHHhcCCCEEEEEeCcCc
Q 001919 465 GIACVT-GDSGIGKTELLLEFAYRYHQRYKMVLWVGGESR 503 (996)
Q Consensus 465 ~vV~I~-G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~~ 503 (996)
++|+|+ +-||+||||+|..++..+...-..++-|+++..
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 468887 589999999999999988776667888887754
No 490
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.02 E-value=0.41 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|.|+.|.|||||.+.++--+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999987643
No 491
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.01 E-value=0.36 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998764
No 492
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.93 E-value=0.5 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+++|+|++|.|||||++.++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999998754
No 493
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.91 E-value=0.4 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeC
Q 001919 465 GIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGG 500 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~ 500 (996)
.+++|.|+.|.|||||.+.++--+. ...+.++++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g 70 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDG 70 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECC
Confidence 4899999999999999998765432 2346666643
No 494
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.89 E-value=0.58 Score=44.67 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 495
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.82 E-value=0.42 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++--
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 496
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.81 E-value=0.93 Score=46.40 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhcCCCEEE
Q 001919 466 IACVTGDSGIGKTELLLEFAYRYHQRYKMVL 496 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~ 496 (996)
.|+|-|+-|.||||++..++..+...++.++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 6899999999999999999999876666544
No 497
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.79 E-value=0.81 Score=49.76 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=33.0
Q ss_pred ceEEEEEcC-CCCChhHHHHHHHHHHhcCCCEEEEEeCcC
Q 001919 464 KGIACVTGD-SGIGKTELLLEFAYRYHQRYKMVLWVGGES 502 (996)
Q Consensus 464 ~~vV~I~G~-gGIGKTtLA~~~~~~~~~~F~~v~wi~~~~ 502 (996)
.++|+|+|. ||+||||+|..++..+...-..++.|+++-
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 357888885 899999999999998887766789998875
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=84.75 E-value=0.58 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 001919 466 IACVTGDSGIGKTELLLEFAYRY 488 (996)
Q Consensus 466 vV~I~G~gGIGKTtLA~~~~~~~ 488 (996)
.+||.|++|.||||+|+.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 499
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.69 E-value=0.77 Score=50.90 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCChhHHHHHHHHHHhcCCCEEEEEeCc
Q 001919 464 KGIACVTGDSGIGKTELLLEFAYRYHQRYKMVLWVGGE 501 (996)
Q Consensus 464 ~~vV~I~G~gGIGKTtLA~~~~~~~~~~F~~v~wi~~~ 501 (996)
..+|+|.|.+|.|||||+..++..+...-..+..++..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 35899999999999999999988776544445555443
No 500
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.67 E-value=0.43 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 001919 465 GIACVTGDSGIGKTELLLEFAYR 487 (996)
Q Consensus 465 ~vV~I~G~gGIGKTtLA~~~~~~ 487 (996)
.+++|.|+.|.|||||.+.++--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
Done!