BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001920
(996 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
PE=1 SV=4
Length = 1817
Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 283/919 (30%), Positives = 414/919 (45%), Gaps = 174/919 (18%)
Query: 190 FGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTP---LFGSSSTSAFGASSTPAFGAS 246
FG TS AFG++ AFG+S+ +GG FG S T LFG+SS S S++ FG
Sbjct: 29 FGTTSGGAFGTS--AFGSSN----NTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFG-- 80
Query: 247 SAPAFGASSAPAFGASSTPAFGASSAGSFSFGS-SPAFGQST-SAFSSSPFGTSTSPFGA 304
FG S+ A FG +S G+ F S + AF Q+ + F + FGTSTS G
Sbjct: 81 ----FGTSTGTA-----NTLFGTASTGTSLFSSQNNAFAQNKPTGFGN--FGTSTSSGGL 129
Query: 305 QSSPFGGQSTTPT-FGSTG---FGQSTFGGQRGGSRIAAYAPT---TEAETGSASQPAGK 357
FG +TT FGST FG S+F G+ I PT T + G ++ + K
Sbjct: 130 ----FGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTK 185
Query: 358 LESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIG---FGASAAPSSP---FA 411
+ I++M Y+ KS EELR EDYQ KG P Q G FG+S A SS F+
Sbjct: 186 HQCITAMKEYESKSLEELRLEDYQANRKG---PQNQVGAGTTTGLFGSSPATSSATGLFS 242
Query: 412 PSP-----AFGQSSASPFSSSTM------SNLFAPKTSTFTSS-TNPFGSTSSATPSIFG 459
S A+GQ+ + F +ST LF + TS + PFG ++ + F
Sbjct: 243 SSTTNSGFAYGQNKTA-FGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTQNTGFS 301
Query: 460 STSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAF 519
+T T G S+ G LF T FG+ N + ++ + GQT + F
Sbjct: 302 FGNTSTIGQPSTNTMG----LFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGF 357
Query: 520 GQATSS-FGQSTMPSFGQSNLFSTPSPGF---SGGIFSSTPSLVPSSTPS----GFGQTT 571
G S+ FG + + +FG S +T +P F SGG+F + P+L + + GFG T
Sbjct: 358 GAVGSTLFGNNKLTTFGSS---TTSAPSFGTTSGGLFGNKPTLTLGTNTNTSNFGFGTNT 414
Query: 572 PSVSM----PFQLAQPAQTAGAFGFSNFGQTQA----GNTSNFGGTLGT--FGQSNFGQL 621
S+ P FG + G QA N GG LGT FG F
Sbjct: 415 SGNSIFGSKPAPGTLGTGLGAGFG-TALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTT 473
Query: 622 SATP--SSVTVPVPVTNPFGTL--PAMPQMSIARA-----GTAPSIQYGISSMPVVEK-- 670
+AT + PV +T+P + A+ Q I G +P + +S E+
Sbjct: 474 TATLGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRNPMSDPKKKEERL 533
Query: 671 --SAPVRISSLLTSRH--LSQRRIRLPARKYNPK----NDNMRVPFFS--DDEETPSTPK 720
+ P +L T H L+ R PA + PK + F DD+E PS
Sbjct: 534 KPTNPAAQKALTTPTHYKLTPR----PATRVRPKALQTTGTAKSHLFDGLDDDE-PSL-- 586
Query: 721 ADALFIPRENPRALIIRPTEQWPLGASAMKTSSIKDTSTRARENESPVENGTVKEKV--- 777
A+ F+P+++ + L+++ L S + + +D+ A +E P ENG E+
Sbjct: 587 ANGAFMPKKSIKKLVLK-----NLNNSNLFSPVNRDSENLASPSEYP-ENG---ERFSFL 637
Query: 778 -QPVKVNHKPNGVHD--------------------------DHSNQKDESYVTLNGHRAG 810
+PV NH+ +G D +SN D++ V LN A
Sbjct: 638 SKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIVALNMRAAL 697
Query: 811 EAAI-------------VYEHGANIE----ALMPK---LRRSDYYTEPRIQELAAKERAE 850
+ + + IE + P L + YYT P + +L AK E
Sbjct: 698 RNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDL-AKITNE 756
Query: 851 PGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGL 910
G C V DF +GR GYGSI F G+ ++ L+L+ +V +EV+VY+DD++KPPVG+GL
Sbjct: 757 KGEC-IVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGL 815
Query: 911 NKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLKRKAEDQGAEFISYDPIKGEWKF 968
N+ AEVTL + DK + K ++ Y+ L+ + QGA+F Y P G W F
Sbjct: 816 NRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVF 875
Query: 969 SVNHFSEYKLGDEDKQDDQ 987
V+HFS+Y L D D+++++
Sbjct: 876 KVSHFSKYGLQDSDEEEEE 894
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 125/313 (39%), Gaps = 86/313 (27%)
Query: 54 GTSTGVFGAPPSSSP----FSSATT-------------------FGASSSPAFGSSMPAF 90
GT+TG+FG+ P++S FSS+TT FG + FG
Sbjct: 222 GTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQT 281
Query: 91 GASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGST------TQQSQP--AFGS 142
+ + FG ++++ Q F FG+TST P +T TQ SQP FG+
Sbjct: 282 TSLFSKPFGQATTT--------QNTGFSFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGT 333
Query: 143 S--------------LFG-SSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSA 187
+ LFG ++T FGA FG FG+S TS P+FG TS
Sbjct: 334 ATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSS-----TTSAPSFGTTSG 388
Query: 188 PAFG-----------ATSTPAFGST---GTAFGASSAPAFGS-------GGAFGASSTPL 226
FG TS FG+ + FG+ AP G A GA L
Sbjct: 389 GLFGNKPTLTLGTNTNTSNFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASL 448
Query: 227 FGSSSTSAFGASSTPAFGASSAPAFGASSAPA-FGASSTPAFGASSAGSFSFGSSPAFGQ 285
FG++ G T AFG AP F ++A FGA P A + + S Q
Sbjct: 449 FGNNQPKIGGPLGTGAFG---APGFNTTTATLGFGAPQAPV--ALTDPNASAAQQAVLQQ 503
Query: 286 STSAFSSSPFGTS 298
++ + SPFG S
Sbjct: 504 HINSLTYSPFGDS 516
Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 101/247 (40%), Gaps = 88/247 (35%)
Query: 21 IFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTST----------------------- 57
+FGQ N + + F+ KPFG T +TG S FG TST
Sbjct: 273 LFGQQNQQTTSLFS-KPFGQATTTQNTGFS-FGNTSTIGQPSTNTMGLFGVTQASQPGGL 330
Query: 58 -----------------GVFGAPPSSSPFSSATTFGASSSPAFGSS-MPAFGASST--PS 97
G+FG + T FGA S FG++ + FG+S+T PS
Sbjct: 331 FGTATNTSTGTAFGTGTGLFG--------QTNTGFGAVGSTLFGNNKLTTFGSSTTSAPS 382
Query: 98 FGSSSSSFGGSSIFGQKPA-----------FGFGSTSTQTSPFGSTTQQSQPAFGSSLFG 146
FG++S GG +FG KP FGFG+ ++ S FG S+PA G+ G
Sbjct: 383 FGTTS---GG--LFGNKPTLTLGTNTNTSNFGFGTNTSGNSIFG-----SKPAPGTLGTG 432
Query: 147 SSTPFGASSQPAFGATSTPAFGTSNPAFGA-TSTPAFGATSAPAFGATSTPAFGSTGTAF 205
FG A GA FG + P G T AFG AP F T+T G F
Sbjct: 433 LGAGFGT----ALGAGQASLFGNNQPKIGGPLGTGAFG---APGFN-TTTATLG-----F 479
Query: 206 GASSAPA 212
GA AP
Sbjct: 480 GAPQAPV 486
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 123/290 (42%), Gaps = 58/290 (20%)
Query: 73 TTFGASSSPAFGSSMPAFGASSTPS--FGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFG 130
T FG +S AFG+S AFG+S+ FG+S + GG +FG +F +TST T FG
Sbjct: 27 TGFGTTSGGAFGTS--AFGSSNNTGGLFGNSQTKPGG--LFGTS-SFSQPATSTSTG-FG 80
Query: 131 STTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFG-----AT 185
FG+S ++T FG +S T T F + N AF FG +
Sbjct: 81 ---------FGTSTGTANTLFGTAS------TGTSLFSSQNNAFAQNKPTGFGNFGTSTS 125
Query: 186 SAPAFGATSTPA--FGST-GTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPA 242
S FG T+T + FGST G+ FG SS A +G + P G+ + G S+ +
Sbjct: 126 SGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFN--PPTGTDTMVKAGVSTNIS 183
Query: 243 FGASSAPAFGASSAPAFGASSTPAFGASSAG----------SFSFGSSPAFGQSTSAFSS 292
A + + + A+ G + FGSSPA +T FSS
Sbjct: 184 TKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSSATGLFSS 243
Query: 293 S-------------PFGTSTSPFGAQSSPFGGQST--TPTFGSTGFGQST 327
S FGTST+ FG GQ T + S FGQ+T
Sbjct: 244 STTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQAT 293
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
GN=Nup98 PE=1 SV=2
Length = 1816
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 99/161 (61%), Gaps = 4/161 (2%)
Query: 829 LRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQ 888
L + YYT P + +LA K E G C V DF +GR GYGSI F G+ ++ L+L+ +V
Sbjct: 736 LTKVGYYTIPSMDDLA-KITNEKGECI-VSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVH 793
Query: 889 FNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLK 946
+EVIVY+DD++KPPVG+GLN+ AEVTL + DK + K ++ Y+ L+
Sbjct: 794 IRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLE 853
Query: 947 RKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQ 987
+ QGA+F Y P G W F V+HFS+Y L D D+++++
Sbjct: 854 AVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEE 894
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 195/404 (48%), Gaps = 74/404 (18%)
Query: 190 FGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTP---LFGSSSTSAFGASSTPAFGAS 246
FG TS AFG++ AFG+S+ +GG FG S T LFG+SS S S++ FG
Sbjct: 29 FGTTSGGAFGTS--AFGSSN----NTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFG-- 80
Query: 247 SAPAFGASSAPAFGASSTPAFGASSAGSFSFGS-SPAFGQST-SAFSSSPFGTSTSPFGA 304
FG S+ +S FG ++ G+ F S + AF Q+ + F + FGTSTS G
Sbjct: 81 ----FGTSTG-----TSNSLFGTANTGTSLFSSQNNAFAQNKPTGFGN--FGTSTSSGGL 129
Query: 305 QSSPFGGQSTTPT-FGSTG---FGQSTFGGQRGGSRIAAYAPT---TEAETGSASQPAGK 357
FG +TT FG+T FG S+F G+ I PT T + G ++ + K
Sbjct: 130 ----FGTTNTTSNPFGNTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTK 185
Query: 358 LESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAAPSSPFAPSPAFG 417
+ I++M Y+ KS EELR EDYQ KG P Q G G F SPA
Sbjct: 186 HQCITAMKEYESKSLEELRLEDYQANRKG---PQNQVGAGTTTGL-------FGSSPA-T 234
Query: 418 QSSASPFSSSTMSNLFA---PKTSTFTSS----TNP---FGSTSSATPSIFG-----STS 462
S+ FSSST ++ F+ KT+ TS+ TNP FG + T S+F +T+
Sbjct: 235 SSATGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATT 294
Query: 463 TP----TFGTSSSPAFGSSPS--LFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTG 516
TP +FG +S+ S+ + LF T FG+ N + ++ + GQ
Sbjct: 295 TPNTGFSFGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQPN 354
Query: 517 SAFGQATSS-FGQSTMPSFGQSNLFSTPSPGF---SGGIFSSTP 556
+ FG S+ FG + + +FG S +T +P F SGG+F + P
Sbjct: 355 TGFGAVGSTLFGNNKLTTFGTS---TTSAPSFGTTSGGLFGNKP 395
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 121/316 (38%), Gaps = 92/316 (29%)
Query: 54 GTSTGVFGAPPSSSP----FSSATT-------------------FGASSSPAFGS----- 85
GT+TG+FG+ P++S FSS+TT FG + FG
Sbjct: 222 GTTTGLFGSSPATSSATGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNPGGLFGQQNQQT 281
Query: 86 ----SMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQP--A 139
S P A++TP+ G SFG +S GQ ST T TQ SQP
Sbjct: 282 TSLFSKPFGQATTTPNTG---FSFGNTSTLGQP--------STNTMGLFGVTQASQPGGL 330
Query: 140 FGSS--------------LFGS-STPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGA 184
FG++ LFG +T FGA FG FGTS TS P+FG
Sbjct: 331 FGTATNTSTGTAFGTGTGLFGQPNTGFGAVGSTLFGNNKLTTFGTS-----TTSAPSFGT 385
Query: 185 TSAPAFG---------------------ATSTPAFGSTGTAFGASSAPAFGSGGAFGASS 223
TS FG + + FGS A + G G A GA
Sbjct: 386 TSGGLFGNKPTLTLGTNTNTSNFGFGTNNSGSSIFGSKPAAGTLGTGLGTGFGTALGAGQ 445
Query: 224 TPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPA-FGASSTPAFGASSAGSFSFGSSPA 282
LFG++ G T AFG AP F S+A FGA P A + + S
Sbjct: 446 ASLFGNNQPKIGGPLGTGAFG---APGFNTSTAILGFGAPQAPV--ALTDPNASAAQQAV 500
Query: 283 FGQSTSAFSSSPFGTS 298
Q ++ + SPFG S
Sbjct: 501 LQQHLNSLTYSPFGDS 516
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 109/235 (46%), Gaps = 61/235 (25%)
Query: 5 TNPFGQSSSSP-----FGSQSIFGQNNNASNNPF----APKP---FGTTTPFGSTGSSIF 52
+ PFGQ++++P FG+ S GQ + + F A +P FGT T +T +
Sbjct: 286 SKPFGQATTTPNTGFSFGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTAT---NTSTGTA 342
Query: 53 GGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSS-MPAFGASST--PSFGSSSSSFGGSS 109
GT TG+FG P T FGA S FG++ + FG S+T PSFG++S GG
Sbjct: 343 FGTGTGLFGQP--------NTGFGAVGSTLFGNNKLTTFGTSTTSAPSFGTTS---GG-- 389
Query: 110 IFGQKPA-----------FGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPA 158
+FG KP FGFG+ ++ +S FG S+PA G+ T G A
Sbjct: 390 LFGNKPTLTLGTNTNTSNFGFGTNNSGSSIFG-----SKPAAGT----LGTGLGTGFGTA 440
Query: 159 FGATSTPAFGTSNPAFGA-TSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPA 212
GA FG + P G T AFG AP F TST G FGA AP
Sbjct: 441 LGAGQASLFGNNQPKIGGPLGTGAFG---APGFN-TSTAILG-----FGAPQAPV 486
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 142/326 (43%), Gaps = 65/326 (19%)
Query: 73 TTFGASSSPAFGSSMPAFGASSTPS--FGSSSSSFGGSSIFG----QKPA------FGFG 120
T FG +S AFG+S AFG+S+ FG+S + GG +FG +PA FGFG
Sbjct: 27 TGFGTTSGGAFGTS--AFGSSNNTGGLFGNSQTKPGG--LFGTSSFSQPATSTSTGFGFG 82
Query: 121 -STSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPA----FGATSTP--AFGTSNPA 173
ST T S FG+ G+SLF S A ++P FG +++ FGT+N
Sbjct: 83 TSTGTSNSLFGTANT------GTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTN-- 134
Query: 174 FGATSTPAFGATSAPAFGATSTPAFGSTGTAFG---ASSAPAFGSGGAFGASSTPLFGSS 230
TS P FG TS FG +S A TGT + G ST +
Sbjct: 135 --TTSNP-FGNTSGSLFGPSSFTA-APTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCIT 190
Query: 231 STSAFGASSTPAFGASSAPAFGASSAPAFGA-SSTPAFGASSAGSFSFG--------SSP 281
+ + + S A GA ++T FG+S A S + G S+
Sbjct: 191 AMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSSATGLFSSSTTNSAF 250
Query: 282 AFGQSTSAFSSSPFGTSTSP---FGAQ--------SSPFGGQSTTPTFGSTGFGQSTFGG 330
++GQ+ +AF +S G T+P FG Q S PFG +TTP G + FG ++ G
Sbjct: 251 SYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTPNTGFS-FGNTSTLG 309
Query: 331 QRGGSRIAAYAPTTEAETGSASQPAG 356
Q + + + T ASQP G
Sbjct: 310 QPSTNTMGLFGVT------QASQPGG 329
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum
GN=nup98 PE=3 SV=1
Length = 2053
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
Query: 827 PKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESL 886
PKL R Y P I+EL+ K E V+ F + R G GSI F G T++ LDL+ +
Sbjct: 1021 PKLTRDGYQCVPSIKELSKKTDKE---LSSVQGFTISRDGCGSIYFPGSTNLVALDLDDI 1077
Query: 887 VQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLK 946
V REV VY D+ KP +G GLN+ A VTL N +K V ++G ++KY+ LK
Sbjct: 1078 VDIEPREVSVYKDEETKPEIGYGLNRDAVVTLENCWPKNKNGEVVKEDGTILDKYENALK 1137
Query: 947 RKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQD 985
+ + F+SY G W F+V HFS+Y D D+ D
Sbjct: 1138 KVSAKSDCGFVSYSRSNGTWVFTVKHFSKYSAPDFDEDD 1176
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 126/277 (45%), Gaps = 62/277 (22%)
Query: 1 MFGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFG-----STGSSIFGGT 55
+FGST P Q + +QS+FG + +PF + T+TPFG +TGS +FG
Sbjct: 375 LFGSTQPTQQQTGGAQPTQSLFGGQTQTTTSPFGSQ---TSTPFGQPQQTNTGSGLFGAQ 431
Query: 56 ST-------GVFGAPPS----------SSPFSSATTFGASSSP----AFGSSMPAFGASS 94
T G+FGA P+ + P S FG S + FG++ P +
Sbjct: 432 QTQQTNTGGGLFGAQPTQQTSGGGLFGTQPTSGTGLFGTSPTAGGTGLFGTTQPT--SQG 489
Query: 95 TPSFGSSSSSFGGSSIFGQKPAFG---FGSTSTQ-TSPFGSTTQQSQPAFGSSLFGSSTP 150
T FG++ + G+ +FG P G FGST T T FGST P G+ LFGS+ P
Sbjct: 490 TGLFGTTQPTTQGTGLFGTSPTSGTGLFGSTPTSGTGLFGST-----PTSGTGLFGSAQP 544
Query: 151 FGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSA 210
P + T FG + T T FG+ + P+ G FG S+
Sbjct: 545 ------PQNQQSQTSLFGNTGTGATNTGTGLFGS---------AQPSSNPGGGLFG-SAQ 588
Query: 211 PAFGSGGAFGAS------STPLFGSSSTSAFGASSTP 241
P+ +GG FG++ +T LFG+++ S G +TP
Sbjct: 589 PSTTTGGLFGSNQPTAQPTTSLFGNTTGSVGGLGATP 625
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans
GN=npp-10 PE=2 SV=1
Length = 1678
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 828 KLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLV 887
KL + DY++ P I E+ K + G VGR YGS+ + G +++ + L+ +V
Sbjct: 774 KLTKPDYFSLPTINEM--KNMIKNGRVVLEDGLTVGRSSYGSVYWPGRVELKDVALDEIV 831
Query: 888 QFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEK--YKEML 945
F +REV VY ++ +K P GQ LN+PAEVTL + DKKT + ++ K+ + ++E L
Sbjct: 832 VFRHREVTVYPNEEEKAPEGQELNRPAEVTLERVWYTDKKTKKEVRDVVKLSEIGWREHL 891
Query: 946 KRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDK 983
+R+ GA F + G W F V+HFS+Y L D+D+
Sbjct: 892 ERQTIRMGAAFKDFRAETGSWVFRVDHFSKYGLADDDE 929
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 117/256 (45%), Gaps = 57/256 (22%)
Query: 1 MFGSTNPFGQSSSSPFGSQSIFGQNNNASNNPF-----APKPFGTTTPFGSTGSSIFGGT 55
+FG++N Q+ GS +FG +N PFG T +TGSS+FG
Sbjct: 211 LFGASNTTNQA-----GSSGLFGSSNAQQKTSLFGGASTSSPFGGNTSTANTGSSLFGNN 265
Query: 56 STG-------VFGAPPS-SSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGG 107
+ +FGA P+ SS F S T GAS +FG ++ G
Sbjct: 266 NANTSAASGSLFGAKPAGSSLFGSTATTGAS------------------TFGQTT----G 303
Query: 108 SSIFG-QKPAFGFGSTSTQTSPFGSTTQQSQ--PAFGSSLFGSSTPFGASSQPAFGATST 164
SS+FG Q+P T+T S FG+T Q+Q FG++ + FG + Q +S
Sbjct: 304 SSLFGNQQP-----QTNTGGSLFGNTQNQNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSG 358
Query: 165 PAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASST 224
+FG + A A PA T FG TST GS + FGA PA +G FGA+
Sbjct: 359 FSFGGAPAATNAFGQPAAANTGGSLFGNTSTANTGS--SLFGAK--PATSTGFTFGATQ- 413
Query: 225 PLFGSSSTSAFGASST 240
++T+AFG+++T
Sbjct: 414 ----PTTTNAFGSTNT 425
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 188/418 (44%), Gaps = 63/418 (15%)
Query: 217 GAFGASSTPLFGSSSTSAFGAS-STPA---FGASS--APAFGASSAPAFGASSTPAFGAS 270
G FG P S +T FGA+ + PA FGA+S + FG+ P SS G +
Sbjct: 34 GLFGQ---PANNSGTTGLFGAAQNKPAGSIFGAASNTSSIFGSPQQPQNNQSSLFGGGQN 90
Query: 271 SAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGG 330
+A FGS+ + ++S+ FG + + G SS FG + P+ G FG ST G
Sbjct: 91 NANRSIFGSTSSAAPASSSL----FGNNANNTGT-SSIFGSNNNAPSGGGL-FGASTVSG 144
Query: 331 QRGGSRIAAYAPTTEAET----GSASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDKG 386
+ P ++T G+ + K IS+M Y KS EELR EDY + ++
Sbjct: 145 T-----TVKFEPPISSDTMMRNGTTQTISTKHMCISAMSKYDGKSIEELRVEDY-IANRK 198
Query: 387 GPLPAGQSAGGIGFGAS-----AAPSSPFAPSPAFGQSSASPFSSSTMSNLFAPKTSTFT 441
P S GG FGAS A S F S A Q S F ++ S+ F TST
Sbjct: 199 APGTGTTSTGGGLFGASNTTNQAGSSGLFGSSNA--QQKTSLFGGASTSSPFGGNTSTAN 256
Query: 442 SSTNPFGS----TSSATPSIFGST--------STPTFGTSSSPAFGSSP--SLFSNTAPQ 487
+ ++ FG+ TS+A+ S+FG+ ST T G S+ FG + SLF N PQ
Sbjct: 257 TGSSLFGNNNANTSAASGSLFGAKPAGSSLFGSTATTGAST---FGQTTGSSLFGNQQPQ 313
Query: 488 GTV--SSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFG----QSNLFS 541
S FG+ N +QS LF + T TG QS+ SFG +N F
Sbjct: 314 TNTGGSLFGNTQN-QNQSGSLFGNTGTTGTGLFGQAQQQPQQQSSGFSFGGAPAATNAFG 372
Query: 542 TPSPGFSGG-IFSSTPSLVPSSTPSGFGQTTPSVSMPFQL--AQPAQTAGAFGFSNFG 596
P+ +GG +F +T + ++T S P+ S F QP T AFG +N G
Sbjct: 373 QPAAANTGGSLFGNTST---ANTGSSLFGAKPATSTGFTFGATQPT-TTNAFGSTNTG 426
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 42/169 (24%)
Query: 1 MFGST-----NPFGQSS-SSPFGSQ--------SIFG--QNNNASNNPFAPKPFGTTTPF 44
+FGST + FGQ++ SS FG+Q S+FG QN N S + F T F
Sbjct: 286 LFGSTATTGASTFGQTTGSSLFGNQQPQTNTGGSLFGNTQNQNQSGSLFGNTGTTGTGLF 345
Query: 45 GSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSS 104
G +S FG P+++ AFG PA + FG++S++
Sbjct: 346 GQAQQQPQQQSSGFSFGGAPAATN-------------AFGQ--PAAANTGGSLFGNTSTA 390
Query: 105 FGGSSIFGQKPA----FGFGSTS-TQTSPFGSTTQQSQPAFGSSLFGSS 148
GSS+FG KPA F FG+T T T+ FGST G LFG++
Sbjct: 391 NTGSSLFGAKPATSTGFTFGATQPTTTNAFGSTNT------GGGLFGNN 433
>sp|P18899|DDR48_YEAST Stress protein DDR48 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DDR48 PE=1 SV=4
Length = 430
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 172/326 (52%), Gaps = 47/326 (14%)
Query: 22 FGQNNNASNNPFAPKPFGTTTP--FGSTGSSIFGGTSTGVFGAPPSSSPFSS---ATTFG 76
+G NNN S +G+ +GS + +G + +G+ S SS +++G
Sbjct: 80 YGSNNNDS--------YGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYG 131
Query: 77 ASSSPAFGSSM--PAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQ 134
+++ ++GSS ++G+++ S+GS+++ +G +GS++ S +GS
Sbjct: 132 SNNDDSYGSSNNNDSYGSNNNDSYGSNNND-----SYGSNNDDSYGSSNKNKSSYGSNND 186
Query: 135 QSQPAFGSSLFGSSTP----FGASSQPAFGATSTPAFGT-SNPAFGATSTPAFGATSAP- 188
S + +GSS +G+S+ ++G+ + ++G+ +N ++G+ + ++G+++
Sbjct: 187 DSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKK 246
Query: 189 -AFGATSTPAFGSTGT--AFGASSAPAFGSGG----AFGASSTPL-FGSSST-SAFGASS 239
++G+ + ++GS+ ++G+++ ++GS ++G+SS +GSS+ ++G+S+
Sbjct: 247 SSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSN 306
Query: 240 TP--AFGASSAPAFGASSAPAFGASSTP--AFGASSAGSFSFGSSPAFGQSTSAFSSSPF 295
++G+++ ++G+++ ++G+S+ ++G+S+ S+ + ++G S SS +
Sbjct: 307 KKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSSNKKKSS--Y 364
Query: 296 GTSTSPFGAQSSPFGGQSTTPTFGST 321
G++ +G + ++GS
Sbjct: 365 GSNNDD------SYGSSNNNDSYGSN 384
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 172/319 (53%), Gaps = 50/319 (15%)
Query: 2 FGSTNP--FGQSSSSPFGS----QSIFGQNNN----ASNNPFAPKPFGTTTP--FGSTGS 49
+GS N +G ++ +GS +S +G NN+ +SNN +G+ +GS +
Sbjct: 104 YGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNN---DSYGSNNNDSYGSNNN 160
Query: 50 SIFGGTSTGVFGA---PPSSSPFSSATTFGASSSPAFGSSMP---AFGASSTPSFGSSSS 103
+G + +G+ SS ++ ++G+++ ++GSS ++G+S+ S+GS++
Sbjct: 161 DSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNND 220
Query: 104 -SFG--GSSIFGQKPAFGFGSTSTQTSPFGSTTQQS------QPAFGSSL---FGSSTP- 150
S+G + +G +GS++ + S +GS S ++GS+ +GSS
Sbjct: 221 DSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKN 280
Query: 151 ---FGASSQP-AFGATSTP-AFGTSNP---AFGATSTPAFGATSAPAFGATSTP--AFGS 200
+G+SS ++G+++ ++G+SN ++G+ + ++G+ + ++G+++ ++GS
Sbjct: 281 KSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGS 340
Query: 201 TGT-AFGASSAPAFGSGG----AFGASSTPLFGSSSTS-AFGASSTPAFGASSAPAFGAS 254
+ ++G+++ ++GS ++G+++ +GSS+ + ++G+++ ++G+S+
Sbjct: 341 SNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYG 400
Query: 255 SAPAFGASSTPAFGASSAG 273
S+ +++ ++G+S+ G
Sbjct: 401 SSNYGSSNNDDSYGSSNRG 419
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/337 (16%), Positives = 156/337 (46%), Gaps = 75/337 (22%)
Query: 159 FGATSTPAFGTSN-PAFGATSTPAFGATSAPAFGATSTPAFGSTG---TAFGASSAPAFG 214
+G+ + ++G++N ++G+ + ++G+ + ++G+ + ++GS+ +++G+++ ++G
Sbjct: 80 YGSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYG 139
Query: 215 S---GGAFGASSTPLFGSSSTSAFGASSTPAFGASSAP--AFGASSAPAFGASSTPAFGA 269
S ++G+++ +GS++ ++G+++ ++G+S+ ++G+++ ++G+++ ++G+
Sbjct: 140 SSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGS 199
Query: 270 SSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSP-FGAQSSPFGGQSTTPTFGSTGFGQSTF 328
S+ S+GSS + +G++ +G+ ++ G + ++GS+ +S++
Sbjct: 200 SNKKKSSYGSSN----------NDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKKSSY 249
Query: 329 GGQRGGS-----RIAAYAPTTEAETGSASQPAGKLESISSMPVYKDKSHEELRWEDYQLG 383
G S +Y + GS+++ S S+ Y
Sbjct: 250 GSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSY---------------- 293
Query: 384 DKGGPLPAGQSAGGIGFGASAAPSSPFAPS--PAFGQSSASPFSSSTMSNLFAPKTSTFT 441
G S +G+S S + + ++G ++ + SS
Sbjct: 294 --------GSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNK------------ 333
Query: 442 SSTNPFGSTSSATPSIFGSTSTPTFGTSSSPAFGSSP 478
S +GS++ ++G+++ ++GSS
Sbjct: 334 ------------KKSSYGSSNNDSYGSNNDDSYGSSN 358
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/335 (19%), Positives = 155/335 (46%), Gaps = 61/335 (18%)
Query: 227 FGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSS--PAFG 284
+GS++ ++G+++ ++G+++ ++G+++ ++G+++ ++G+S+ S+GS+ ++G
Sbjct: 80 YGSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYG 139
Query: 285 QSTSAFSSSPFGTSTSP-FGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPT 343
S + S +G++ + +G+ ++ G + ++GS+ +S++G +Y
Sbjct: 140 SSNNNDS---YGSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSN----NDDSYGSN 192
Query: 344 TEAETGSASQPAGKLESISSMPVY---KDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGF 400
+ GS+++ S S+ Y D S+ + Y S +
Sbjct: 193 NDDSYGSSNKKKSSYGS-SNNDSYGSNNDDSYGSNNNDSY------------GSNNDDSY 239
Query: 401 GASAAPSSPFAPS--PAFGQSSASPFSSSTMSNLFA---PKTSTFTSSTNP--FGS---- 449
G+S S + + ++G S+ + S + + S++ SS+N +GS
Sbjct: 240 GSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSSYGSSSNDDSYGSSNND 299
Query: 450 ----TSSATPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMN--FGSQS 503
+S+ S +GS + ++G+++ ++GSS SS+GS N +GS +
Sbjct: 300 DSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKK---------KSSYGSSNNDSYGSNN 350
Query: 504 SPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSN 538
+ S+ + SS+G + S+G SN
Sbjct: 351 DDSYGSSN---------KKKSSYGSNNDDSYGSSN 376
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup189 PE=1 SV=1
Length = 1778
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 30/228 (13%)
Query: 774 KEKVQPVKVNHK-------PNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALM 826
++ ++ + + HK NGV + + + D + E A E +++
Sbjct: 737 RQNIKKLVITHKISKDDILQNGVKNGNDAKSDS--------KVQEKAPQNEADGSLKKDE 788
Query: 827 PKLRRSDYYTEPRIQELAA--KERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLD-L 883
+ DY+ +P I+EL+ KE+ C V F VGR GYG + FL D+ + L
Sbjct: 789 HVVLSDDYWMKPSIEELSKYPKEK----LCS-VHQFSVGRTGYGQVAFLKPVDLSGFEKL 843
Query: 884 ESL----VQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE 939
E + V F + VY + PP+G+GLN PA +TL ++T K+ P+
Sbjct: 844 EDIPGKVVVFERKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREPIKD-PQNP 902
Query: 940 KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQ 987
+Y + +KR + EFI ++ G+W F V HFS Y L D++++++
Sbjct: 903 RYIQHVKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDEEEEND 948
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 159/331 (48%), Gaps = 44/331 (13%)
Query: 21 IFGQNNNASNNPFAPKPFGTTTPFG-STGSSIFGGTSTGVFGAPPSSSPFSSATTFGASS 79
+FG N+N N +TT FG +T +FG + G +++ + T FG SS
Sbjct: 27 LFGSNSNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNTTTTGGTGFGMSS 86
Query: 80 SPAFGSSMPAFGASSTPSFGSSSSSFG--GSSIFGQKPAFGFGSTSTQTSPFGS---TTQ 134
G+ M FG S+TP+FG ++++ G +FG A +T T S FGS +T
Sbjct: 87 ----GTGM--FGQSNTPAFGGTNNATNPSGGGLFGSNTANNNANTGTSFS-FGSNAGSTG 139
Query: 135 QSQPAFGSSLFGSSTPFGASSQPAFG------ATSTPAFGTSNPAFGATSTPAFGATSAP 188
G LFGSST ++ AFG + + GT+NP + TS
Sbjct: 140 FGSQGTGGGLFGSSTT--PATTNAFGTSGFVSSNANAVNGTANPPYAVTSEKDPQTNGTS 197
Query: 189 AF-GATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASS 247
F T PA+ S +F + G FG +S+ +++TSAFG STPAFGAS+
Sbjct: 198 VFQSITCMPAYRS--YSFEELRLQDYNQGRRFGNASS----TNTTSAFG--STPAFGAST 249
Query: 248 APAFGASSAPAFGASSTPAFGASSA-----GSFSFGSSPAFGQSTSAFSSSPFGTSTSPF 302
P FG + + ++TP FG S+A GS FG AFG +T +++ FG+ T+
Sbjct: 250 TP-FGQNLSGTTN-NATP-FGTSNATNTTPGSGLFGGGSAFGSNT---TNTGFGSGTN-- 301
Query: 303 GAQSSPFGGQSTTPTFGSTG-FGQSTFGGQR 332
A FG + T + STG FG STF Q+
Sbjct: 302 NASGGLFGQNNNTTSTPSTGLFGGSTFNQQK 332
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 82/281 (29%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGST-GSSIFGGTSTGVF 60
FGST FG +S++PFG Q++ G NNA+ PFGT+ +T GS +FGG S F
Sbjct: 239 FGSTPAFG-ASTTPFG-QNLSGTTNNAT-------PFGTSNATNTTPGSGLFGGGS--AF 287
Query: 61 GAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFG 120
G+ +++ F S T +S FG + +STPS G FGGS+ QKPAF
Sbjct: 288 GSNTTNTGFGSGT--NNASGGLFGQNN---NTTSTPSTGL----FGGSTFNQQKPAF--- 335
Query: 121 STSTQTSPFGSTTQQSQPAFGSSLFGSSTPF----------------------------- 151
S FGSTT + G+ LFGS+
Sbjct: 336 ------SGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTGTGFGSSTGG 389
Query: 152 ---GASSQPAFGATSTPAFGTSNPAFGATS---------TPAFGATSAP--AFGATSTPA 197
++QP G T FG FGA + T FG ++ +FGA + A
Sbjct: 390 FGSNTNNQPNSGTMGTGLFG-----FGANNNTANNNTAPTSTFGGNNSSNFSFGANNNAA 444
Query: 198 FGSTGTAFGASSAPAFGSGGAFGASST----PLFGSSSTSA 234
+G FG+++ G +FG ++ P FGS++T+A
Sbjct: 445 TKPSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTATTA 485
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP100 PE=1 SV=1
Length = 959
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 155/595 (26%), Positives = 246/595 (41%), Gaps = 115/595 (19%)
Query: 447 FGSTSSATP-SIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSG--MNFGSQS 503
FG SS P S+FG+T+ PT T S SLF A + T FG N
Sbjct: 407 FGGNSSTQPNSLFGTTNVPTSNTQSQQG----NSLFG--ATKLTNMPFGGNPTANQSGSG 460
Query: 504 SPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSST 563
+ LF + TGS FG T+S +T+PS + G+F + + S+T
Sbjct: 461 NSLFGTKPASTTGSLFGNNTAS---TTVPS--------------TNGLFGNNANNSTSTT 503
Query: 564 PSG-FGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAG-NTSNFGGTL---GTFGQSN- 617
+G FG + P ++PA G FG SN + G N FGGT G FG +
Sbjct: 504 NTGLFG------AKPDSQSKPALGGGLFGNSNSNSSTIGQNKPVFGGTTQNTGLFGATGT 557
Query: 618 -----------FGQLSATPSSVTVPVPVTNP------FGT--LPAMPQMSIARAG--TAP 656
FGQ + T + T VP N GT +P++ Q + +
Sbjct: 558 NSSAVGSTGKLFGQNNNTLNVGTQNVPPVNNTTQNALLGTTAVPSLQQAPVTNEQLFSKI 617
Query: 657 SIQYGISSMPVVEKSAPV-----RISSLLTSRHLSQRRIRLPARKYNPKNDNM-RVPFFS 710
SI I++ PV ++ V R SSL ++ L+ + + P+ + K + S
Sbjct: 618 SIPNSITN-PVKATTSKVNADMKRNSSLTSAYRLAPKPLFAPSSNGDAKFQKWGKTLERS 676
Query: 711 D----------DEETPSTPKADALFIP-RENPRALIIRPTEQWP-LGASAMKTSSIK--- 755
D D E+ D LF P R + L+I+ + + + + S +K
Sbjct: 677 DRGSSTSNSITDPESSYLNSNDLLFDPDRRYLKHLVIKNNKNLNVINHNDDEASKVKLVT 736
Query: 756 ---DTSTRARENESPVENGTVKEKVQPVKVNHKPN-GVHDDHSNQKDESYVTLNGHR-AG 810
+++++ + S + + EK H P + DDH DES G
Sbjct: 737 FTTESASKDDQASSSIAASKLTEKA------HSPQTDLKDDH----DESTPDPQSKSPNG 786
Query: 811 EAAIVYEHGANIEALMPKLRRSD-------YYTEPRIQELAAKERAEPGFCRRVKDFVVG 863
+I I + +P L +D YY P I+ L K E R++ + V+G
Sbjct: 787 STSIPMIENEKISSKVPGLLSNDVTFFKNNYYISPSIETLGNKSLIE---LRKINNLVIG 843
Query: 864 RHGYGSIKFLGETDVRRLDLESL----VQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLL 919
YG ++FL D+ L++L V F + +Y + S KP G+G+N VTL
Sbjct: 844 HRNYGKVEFLEPVDLLNTPLDTLCGDLVTFGPKSCSIYENCSIKPEKGEGINVRCRVTLY 903
Query: 920 NIKCFDKKTG--VQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNH 972
+ DK+T ++ P +++ LK E+ +F SYDP+ G + ++++H
Sbjct: 904 SCFPIDKETRKPIKNITHPLLKRSIAKLK---ENPVYKFESYDPVTGTYSYTIDH 955
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP145 PE=1 SV=1
Length = 1317
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 17/156 (10%)
Query: 834 YYTEP---RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDV-------RRLDL 883
Y+ P +++ L+ K+ A V +FV+GR GYG I F + D+ R
Sbjct: 461 YWCSPSPEQLERLSLKQLAA------VSNFVIGRRGYGCITFQHDVDLTAFTKSFREELF 514
Query: 884 ESLVQFNN-REVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYK 942
+V F + + V VY D++ KP +G GLN PA +TL N+ DKKT K+ K +++
Sbjct: 515 GKIVIFRSSKTVEVYPDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQ 574
Query: 943 EMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKL 978
++ + +ISY+P G W F VNHFS + L
Sbjct: 575 VFDRKLRSMREMNYISYNPFGGTWTFKVNHFSIWGL 610
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP116 PE=1 SV=2
Length = 1113
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 131/326 (40%), Gaps = 44/326 (13%)
Query: 664 SMPVVEKSAPVRISSLLTSRHLSQRRIRLPARKYNPKND------NMRVPFFSDDEETPS 717
S+ + +K+ + IS+ +L + ++ +NP N R + +E+
Sbjct: 816 SISIDKKNNQIAISNQ-QEENLDESILKASELLFNPDKRSFKNLINNRKMLIASEEKNNG 874
Query: 718 TPKADALFIPR-ENPRALIIRPT---EQWPLGASAMKTSSIKDTSTRARENESPVENGTV 773
+ D F + E ++ +P ++ G M SS D A ++ S +
Sbjct: 875 SQNNDMNFKSKSEEQETILGKPKMDEKETANGGERMVLSSKNDGEDSATKHHSRNMDEEN 934
Query: 774 KEKVQPVKVNHKPNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSD 833
KE V + QK E + + V+ A++ +
Sbjct: 935 KENVADL---------------QKQE-------YSEDDKKAVF---ADVAEKDASFINEN 969
Query: 834 YYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESL----VQF 889
YY P + L++ + R+V VVG YG I+FL D+ + L SL + F
Sbjct: 970 YYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITF 1026
Query: 890 NNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKA 949
+ I+Y + +P G+G+N A +T N DK T K+ P + K ++R
Sbjct: 1027 EPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKD-PNHQLVKRHIERLK 1085
Query: 950 EDQGAEFISYDPIKGEWKFSVNHFSE 975
++ ++F SYD G + F VNH +E
Sbjct: 1086 KNPNSKFESYDADSGTYVFIVNHAAE 1111
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 226 LFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQ 285
+FG S AF +++T FG S+ FG ++T AFG S + + +PAFG
Sbjct: 1 MFGVSR-GAFPSATTQPFG-STGSTFGGQQQQQQPVANTSAFGLSQQTNTT--QAPAFGN 56
Query: 286 STSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTT- 344
+ S+SPFG S S A +PFG QS ++G S FGG + ++A + +
Sbjct: 57 FGNQTSNSPFGMSGSTT-ANGTPFG-QSQLTNNNASG---SIFGGMGNNTALSAGSASVV 111
Query: 345 -EAETGSASQP-------------AGKLESISSMPVYKDKSHEELRWEDYQLGDK 385
+ G++ +P +SI+ MP Y++ S EELR++DYQ G K
Sbjct: 112 PNSTAGTSIKPFTTFEEKDPTTGVINVFQSITCMPEYRNFSFEELRFQDYQAGRK 166
>sp|Q6CC84|SPT5_YARLI Transcription elongation factor SPT5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=SPT5 PE=3 SV=1
Length = 980
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
Query: 152 GASSQPAFGAT-STPAFGTSNPAFGATSTPAFGA-TSAPAFGATSTPAFGSTGTAFGASS 209
G P++GA TP++G+ P++G T ++G+ T A G TPA+G+ G +
Sbjct: 782 GGGKTPSWGAGGKTPSWGSKTPSWGGAKTSSWGSRTPAANAGGAQTPAWGAMG-----NK 836
Query: 210 APAFGSGGAFGASSTPLFGSSSTSAFGA----SSTPAFGASSAPAFGASSAPAFGASSTP 265
P++G+ S TP +G + T A+GA S TPAFG + P++ +SSA +G SS+
Sbjct: 837 TPSWGAS----ESRTPAWGGAKTPAWGAAGAGSKTPAFGVARTPSWKSSSAGTYGGSSSR 892
Query: 266 AFGASSAGSFSFGSSPAFGQST 287
G GS + +P + +T
Sbjct: 893 NKGWEDLGSGNSAPTPGYAAAT 914
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 47/214 (21%)
Query: 104 SFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFG---SSLFGSSTPF---GASSQP 157
S+GG G+ P++G G +T +GS T P++G +S +GS TP G + P
Sbjct: 779 SWGGG---GKTPSWGAGG---KTPSWGSKT----PSWGGAKTSSWGSRTPAANAGGAQTP 828
Query: 158 AFGA--TSTPAFGTSN---PAFGATSTPAFGATSA----PAFGATSTPAFGSTGTAFGAS 208
A+GA TP++G S PA+G TPA+GA A PAFG TP++ S+
Sbjct: 829 AWGAMGNKTPSWGASESRTPAWGGAKTPAWGAAGAGSKTPAFGVARTPSWKSS------- 881
Query: 209 SAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASS------APAFGASSAPAFGAS 262
S G +G SS+ G + ++ TP + A++ AP GA+ P ++
Sbjct: 882 ------SAGTYGGSSSRNKGWEDLGSGNSAPTPGYAAATPGEMMGAPTPGAAHHPWEDSA 935
Query: 263 STPAF--GASSAGSFS-FGSSPAFGQSTSAFSSS 293
TPA A + G + GS PA ++ +A+S+
Sbjct: 936 PTPAAYNDARTPGVYDPRGSGPAQAETPAAWSTD 969
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 24/130 (18%)
Query: 195 TPAFGSTGTAFGASSAPAFGSGG---AFGASSTPLFGSSSTSAFGASSTPAFGASSAPAF 251
TP++G G P++G+GG ++G S TP +G + TS++G S TPA A
Sbjct: 777 TPSWG------GGGKTPSWGAGGKTPSWG-SKTPSWGGAKTSSWG-SRTPAANA------ 822
Query: 252 GASSAPAFGA--SSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPF 309
G + PA+GA + TP++GAS + + ++G G T A+ ++ G+ T FG +P
Sbjct: 823 GGAQTPAWGAMGNKTPSWGASESRTPAWG-----GAKTPAWGAAGAGSKTPAFGVARTPS 877
Query: 310 GGQSTTPTFG 319
S+ T+G
Sbjct: 878 WKSSSAGTYG 887
Score = 36.6 bits (83), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 38/182 (20%)
Query: 38 FGTTTPFGSTGSS---IFG--GTSTGVFGAPPSSSPFSSATTFGASSSPAFG-----SSM 87
+G+ TP + G + +G G T +GA S +P +G + +PA+G S
Sbjct: 813 WGSRTPAANAGGAQTPAWGAMGNKTPSWGASESRTP-----AWGGAKTPAWGAAGAGSKT 867
Query: 88 PAFGASSTPSFGSSSS-SFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSS--- 143
PAFG + TPS+ SSS+ ++GGSS S + GS P + ++
Sbjct: 868 PAFGVARTPSWKSSSAGTYGGSS-----------SRNKGWEDLGSGNSAPTPGYAAATPG 916
Query: 144 -LFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTG 202
+ G+ TP GA+ P + TPA A+ TP TPA ST
Sbjct: 917 EMMGAPTP-GAAHHPWEDSAPTPA------AYNDARTPGVYDPRGSGPAQAETPAAWSTD 969
Query: 203 TA 204
A
Sbjct: 970 DA 971
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 59/269 (21%)
Query: 42 TPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSS 101
TP +G + G+ T ++GA +P +GS PA+ TP++G
Sbjct: 800 TPMRDSGKTPMYGSKTPMYGA----------------QTPMYGSMTPAYDGGRTPAYGEG 843
Query: 102 SSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQ---PAFGSSLFGSSTPFGASSQPA 158
G+ PA+G ++T +G + S PA+G+ +S PA
Sbjct: 844 ----------GRTPAYG-----SKTPAYGDLDEHSSSRTPAYGND---------SSRTPA 879
Query: 159 FGATSTPAFGTSNPAFGATS---TPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGS 215
+G+ A G PA+G+T TPA+G + + TPA+ +G G S P+ +
Sbjct: 880 YGS----ADGARTPAYGSTEGGRTPAYG-----SMDNSRTPAYDDSGRTPGYESMPS-RT 929
Query: 216 GGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGA--SSTPAFGASSAG 273
+S TP + S SA + + +PA+ + A+ + TPAF + + G
Sbjct: 930 PNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSPAYEPDAPEAYDNAPARTPAFVSRTPG 989
Query: 274 SFSF-GSSPAFGQSTSAFSSSPFGTSTSP 301
++ SSP + + G ++SP
Sbjct: 990 YDTYENSSPTYEPDAATKVEEDIGDTSSP 1018
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 31/158 (19%)
Query: 172 PAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSS 231
P + TP +G+ + P +GA TP +GS A+ PA+G GG TP +GS
Sbjct: 801 PMRDSGKTPMYGSKT-PMYGA-QTPMYGSMTPAYDGGRTPAYGEGG-----RTPAYGSK- 852
Query: 232 TSAFGASSTPAFGASSAPAFGASSAPAFG--ASSTPAFGASSA------GSFSFGSSPAF 283
TPA+G +S PA+G +S TPA+G++ GS G +PA+
Sbjct: 853 --------TPAYG--DLDEHSSSRTPAYGNDSSRTPAYGSADGARTPAYGSTEGGRTPAY 902
Query: 284 GQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGST 321
G ++ + + + +P G +S P S TP + S+
Sbjct: 903 GSMDNSRTPAYDDSGRTP-GYESMP----SRTPNYDSS 935
>sp|P40477|NU159_YEAST Nucleoporin NUP159 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP159 PE=1 SV=1
Length = 1460
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 134/288 (46%), Gaps = 56/288 (19%)
Query: 65 SSSPFSSATTFG---ASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGS 121
S +PF+SA T G + PA +S+ + S+ +FG+ S FG S+ P+ S
Sbjct: 431 SENPFTSANTSGFTFLKTQPAAANSLQS---QSSSTFGAPS--FGSSAFKIDLPSVSSTS 485
Query: 122 TSTQTSPFGSTTQQS-QPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTP 180
T +S +T S +P FG FG+ ++S+ AFG P+FG P+FG+ +
Sbjct: 486 TGVASSEQDATDPASAKPVFGKPAFGAIAKEPSTSEYAFGK---PSFGA--PSFGSGKSS 540
Query: 181 AFGATSAPAFGATS--TPAFGSTGTAFGASSAPAFGSGGAFGASS--TPLFGSSSTSAFG 236
S AFG S TP+FGS G SS SG AFG S TP FGS ++SA
Sbjct: 541 VESPASGSAFGKPSFGTPSFGS-----GNSSVEPPASGSAFGKPSFGTPSFGSGNSSAEP 595
Query: 237 ASSTPAFGASSAPAFGASSAPAFGASST-----------PAFGASS---AGSFSFGSS-- 280
+S AFG P+FG S AFG +S+ AFG+SS A + FGS+
Sbjct: 596 PASGSAFG---KPSFGTS---AFGTASSNETNSGSIFGKAAFGSSSFAPANNELFGSNFT 649
Query: 281 ---PAFGQSTSAFSSSPF--------GTSTSPFGAQSSPFGGQSTTPT 317
P S+SPF S S + S+PFG + T T
Sbjct: 650 ISKPTVDSPKEVDSTSPFPSSGDQSEDESKSDVDSSSTPFGTKPNTST 697
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 88/189 (46%), Gaps = 36/189 (19%)
Query: 55 TSTGVFGAPPSSSPFSSATT--FGASSSPAFG-SSMPAFGASSTPSFGSSSSSFGGSSIF 111
TSTG FGAP ++ S T FG +S P FG S FG+ FG +S +S
Sbjct: 388 TSTG-FGAPSTTDSSSGQQTAGFGGASKPGFGGDSSTGFGSGLKAGFGGHRASTAENSGL 446
Query: 112 --------GQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATS 163
G+ P GFG++S+ S FG QQS+ FG +++ FG S
Sbjct: 447 PTETTGFGGKLPPAGFGASSSNESAFG---QQSKG------------FGGATKNGFGGDS 491
Query: 164 TPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASS 223
+ +FG + FG FG T AP S GS T GA + AFG+ G FG+SS
Sbjct: 492 SNSFGKRDSGFGGPQDQGFGDTDAP-----SKSGLGSFNTGGGAVKS-AFGAAG-FGSSS 544
Query: 224 TPLFGSSST 232
FG+ +T
Sbjct: 545 N--FGNGNT 551
>sp|P15941|MUC1_HUMAN Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=3
Length = 1255
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 118/248 (47%), Gaps = 35/248 (14%)
Query: 45 GSTGSSIFGGTST-GVFGAPPSSSPFSSATTFGASSSPAFGSSMP-AFGASSTPSFGSSS 102
GST G TS AP S++P + T + PA GS+ P A G +S P +
Sbjct: 469 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 528
Query: 103 SSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPF-GASSQPAFGA 161
S PA G S GST + PA G + + P G+++ PA G
Sbjct: 529 GSTA-------PPAHGVTSAPDTRPAPGST---APPAHGVTSAPDTRPAPGSTAPPAHGV 578
Query: 162 TSTPAFGTSNPAFGATSTPAFGATSA----PAFGATSTPAFG-----STGTAFGASSAPA 212
TS P + PA G+T+ PA G TSA PA G+T+ PA G T A G+++ PA
Sbjct: 579 TSAP---DTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPA 635
Query: 213 FGSGGAFGASSTPLFGSSSTSAFGASST----PAFGASSAPAFGASSA----PAFGASST 264
G A + P GS++ A G +S PA G+++ PA G +SA PA G+++
Sbjct: 636 HGVTSA--PDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAP 693
Query: 265 PAFGASSA 272
PA G +SA
Sbjct: 694 PAHGVTSA 701
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 19/120 (15%)
Query: 170 SNPAFGATSTPAFGATSA----PAFGATSTPAFG-----STGTAFGASSAPAFGSGGAFG 220
+ PA G+T+ PA TSA PA G+T+ PA G T A G+++ PA G A
Sbjct: 104 TRPALGSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSA-- 161
Query: 221 ASSTPLFGSSSTSAFGASST----PAFGASSAPAFGASSA----PAFGASSTPAFGASSA 272
+ P GS++ A G +S PA G+++ PA G +SA PA G+++ PA G +SA
Sbjct: 162 PDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSA 221
>sp|P09815|ICEN_PSEFL Ice nucleation protein OS=Pseudomonas fluorescens GN=inaW PE=3 SV=1
Length = 1210
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 57/293 (19%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTP----------FGSTGSSI 51
+GST G S+ G +G A + +G+T+ +GST +S
Sbjct: 679 YGSTQTAGHESTLTAG----YGSTQTAQEDSSLTAGYGSTSTAGFNSSLIAGYGSTQTSG 734
Query: 52 FGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPA-FGASSTPSFGSSSSSFGGSS 109
+ T +G+ ++ SS TT +G++S+ + SS+ A +G++ T + S+ ++ GS
Sbjct: 735 YESILTAGYGSTQTAQDNSSLTTGYGSTSTAGYQSSLIAGYGSTQTAGYESTLTAGYGSC 794
Query: 110 IFGQKPAF---GFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPA 166
Q+ ++ G+GSTST + S L +G++ + + T
Sbjct: 795 QTAQEQSWLTTGYGSTST-------------AGYESRLI---AGYGSTQTAGYKSILTAG 838
Query: 167 FGTSNPA---------FGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGG 217
+G++ A +G+TST + ++ +G+T T + S TA
Sbjct: 839 YGSTQTAQEESSLTAGYGSTSTAGYASSLIAGYGSTQTAGYDSILTA------------- 885
Query: 218 AFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGAS 270
+G++ T L S+ T+ +G++ T FG+S +G+S +G++ T +G++
Sbjct: 886 GYGSTLTALDSSTLTAGYGSTETAGFGSSLMAGYGSSQIAGYGSTLTAGYGST 938
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 138/503 (27%), Positives = 216/503 (42%), Gaps = 78/503 (15%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFG 61
+GST G SS G +G A +G+T GS S I G +G
Sbjct: 471 YGSTQTAGGDSSLTAG----YGSTQTAQVGSDLTAGYGSTGTAGSDSSLIAG------YG 520
Query: 62 APPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFG 120
+ ++ SS T +G++ + GS + A G ST + GS SS G +G G
Sbjct: 521 STQTAGGDSSLTAGYGSTQTAQVGSDLTA-GYGSTGTAGSDSSLIAG---YGSTQTAG-- 574
Query: 121 STSTQTSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQPAFGATSTPAFGTSNPAFGAT 177
S+ T+ +GST Q +Q GS+L +GS+ G+ S G +G++ A G +
Sbjct: 575 GDSSLTAGYGST-QTAQ--MGSNLTAGYGSTGTAGSDSSLIAG------YGSTQTAGGDS 625
Query: 178 S-TPAFGATSAPAFGATSTPAFGSTGTA-FGASSAPAFGSGGAFGASSTPLFGSSSTSAF 235
S T +G+T G+ T +GST TA G+S +GS G S+ + G ST
Sbjct: 626 SLTAGYGSTQTAGHGSILTAGYGSTQTAQEGSSLTAGYGSTSTAGPESSLIAGYGSTQTA 685
Query: 236 GASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQS-TSAFSSSP 294
G ST G +G++ +S T +G++S F+ +G + TS + S
Sbjct: 686 GHESTLTAG------YGSTQTAQEDSSLTAGYGSTSTAGFNSSLIAGYGSTQTSGYESIL 739
Query: 295 FGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTTEAETGSASQP 354
T+ +G+ + S T +GST ST G Q S IA Y T Q
Sbjct: 740 ----TAGYGSTQTAQDNSSLTTGYGST----STAGYQS--SLIAGYGST---------QT 780
Query: 355 AGKLESISSMPVYKDKSHEELRW-------------EDYQLGDKGGPLPAG-QSAGGIGF 400
AG ES + ++ +E W E + G AG +S G+
Sbjct: 781 AG-YESTLTAGYGSCQTAQEQSWLTTGYGSTSTAGYESRLIAGYGSTQTAGYKSILTAGY 839
Query: 401 GASAAPSSPFAPSPAFGQSSASPFSSSTMSNLFAPKTSTFTSS-TNPFGSTSSATPSI-- 457
G++ + + +G +S + ++SS ++ + +T+ + S T +GST +A S
Sbjct: 840 GSTQTAQEESSLTAGYGSTSTAGYASSLIAGYGSTQTAGYDSILTAGYGSTLTALDSSTL 899
Query: 458 ---FGSTSTPTFGTSSSPAFGSS 477
+GST T FG+S +GSS
Sbjct: 900 TAGYGSTETAGFGSSLMAGYGSS 922
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 40/342 (11%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTP----------FGSTG--- 48
+GST G SS G +G A + +G+T +GSTG
Sbjct: 215 YGSTGTAGSDSSLIAG----YGSTQTAGGDSSLTAGYGSTQTAQVGSNLTAGYGSTGTAG 270
Query: 49 --SSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSS-- 103
SS+ G +G+ ++ SS T +G++ + GS + A G ST + GS SS
Sbjct: 271 PDSSLIAG-----YGSTQTAGGESSLTAGYGSTQTAQVGSDLTA-GYGSTGTAGSDSSLI 324
Query: 104 -SFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFG-ASSQPAFGA 161
+G + G + G STQT+ GS + G++ SS G S+Q A G
Sbjct: 325 AGYGSTQTAGGDSSLTAGYGSTQTAQVGSNLTAGYGSTGTAGPDSSLIAGYGSTQTAGGE 384
Query: 162 TS-TPAFGTSNPA-FGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAF 219
+S T +G++ A G+ T +G+T ++ +GST TA G SS A +
Sbjct: 385 SSLTAGYGSTQTAQVGSDLTAGYGSTGTAGSDSSLIAGYGSTQTAGGESSLTA-----GY 439
Query: 220 GASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGS 279
G++ T GS T+ +G++ T +S +G++ +S T +G++
Sbjct: 440 GSTQTAQVGSDLTAGYGSTGTAGSDSSLIAGYGSTQTAGGDSSLTAGYGSTQTAQVGSDL 499
Query: 280 SPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGST 321
+ +G + +A S S + +G+ + G S T +GST
Sbjct: 500 TAGYGSTGTAGSDSSL---IAGYGSTQTAGGDSSLTAGYGST 538
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 61/278 (21%)
Query: 41 TTPFGSTG-----SSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPA-FGAS 93
T +GSTG SS+ G +G+ ++ SS T +G++ + GS + A +G++
Sbjct: 404 TAGYGSTGTAGSDSSLIAG-----YGSTQTAGGESSLTAGYGSTQTAQVGSDLTAGYGST 458
Query: 94 ST--------PSFGSSSSSFGGSSI-----------FGQKPAFGFGSTSTQTSP------ 128
T +GS+ ++ G SS+ G G+GST T S
Sbjct: 459 GTAGSDSSLIAGYGSTQTAGGDSSLTAGYGSTQTAQVGSDLTAGYGSTGTAGSDSSLIAG 518
Query: 129 FGSTTQQSQPAFG-SSL---FGS--STPFGASSQPAFGATST--------PAFGTSNPAF 174
+GST Q A G SSL +GS + G+ +G+T T +G++ A
Sbjct: 519 YGST----QTAGGDSSLTAGYGSTQTAQVGSDLTAGYGSTGTAGSDSSLIAGYGSTQTAG 574
Query: 175 GATS-TPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTS 233
G +S T +G+T G+ T +GSTGTA SS A +G++ T SS T+
Sbjct: 575 GDSSLTAGYGSTQTAQMGSNLTAGYGSTGTAGSDSSLIA-----GYGSTQTAGGDSSLTA 629
Query: 234 AFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASS 271
+G++ T G+ +G++ G+S T +G++S
Sbjct: 630 GYGSTQTAGHGSILTAGYGSTQTAQEGSSLTAGYGSTS 667
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 40/295 (13%)
Query: 51 IFGGTSTGVFGAPPS-SSPFSSATTFGASSS--PAFGSSMPA-FGASSTPSFGSSSSSFG 106
I G STG G+ S + + S T G SS +GS+ A G++ T +GS+ ++
Sbjct: 212 IAGYGSTGTAGSDSSLIAGYGSTQTAGGDSSLTAGYGSTQTAQVGSNLTAGYGSTGTAGP 271
Query: 107 GSSIFGQKPAFGFGSTSTQ------TSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQ- 156
SS+ G+GST T T+ +GS TQ +Q GS L +GS+ G+ S
Sbjct: 272 DSSLI-----AGYGSTQTAGGESSLTAGYGS-TQTAQ--VGSDLTAGYGSTGTAGSDSSL 323
Query: 157 -PAFGATSTPAFGTSNPA-FGATSTPAFGATSAPAFGATST--------PAFGSTGTAFG 206
+G+T T +S A +G+T T G+ +G+T T +GST TA G
Sbjct: 324 IAGYGSTQTAGGDSSLTAGYGSTQTAQVGSNLTAGYGSTGTAGPDSSLIAGYGSTQTAGG 383
Query: 207 ASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPA 266
SS A +G++ T GS T+ +G++ T +S +G++ +S T
Sbjct: 384 ESSLTA-----GYGSTQTAQVGSDLTAGYGSTGTAGSDSSLIAGYGSTQTAGGESSLTAG 438
Query: 267 FGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGST 321
+G++ + +G + +A S S + +G+ + G S T +GST
Sbjct: 439 YGSTQTAQVGSDLTAGYGSTGTAGSDSSL---IAGYGSTQTAGGDSSLTAGYGST 490
>sp|P20469|ICEA_PANAN Ice nucleation protein InaA OS=Pantoea ananas GN=inaA PE=3 SV=1
Length = 1322
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 39/284 (13%)
Query: 2 FGSTNPFGQSSS--SPFGSQSIFGQNNNAS----NNPFAPKPFGTTTPFGSTG-----SS 50
+GST G+ +S + +GS G++++ + + A K T +GSTG SS
Sbjct: 260 YGSTQTAGEDNSLTAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSS 319
Query: 51 IFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSS 109
+ G +G+ ++ S+ T +G++ + GS + A G ST + G SS G
Sbjct: 320 LIAG-----YGSTQTAGEESTQTAGYGSTQTAQKGSDLTA-GYGSTGTAGDDSSLIAG-- 371
Query: 110 IFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQPAFGATSTPA 166
+G G S+ T+ +GS TQ +Q GS L +GS+ GA S G ST
Sbjct: 372 -YGSTQT--AGEDSSLTAGYGS-TQTAQK--GSDLTAGYGSTGTSGADSSLIAGYGSTQT 425
Query: 167 FGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPL 226
G + T T +G+T G+ T +GSTGTA SS A +G++ T
Sbjct: 426 AGEES-----TQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIA-----GYGSTQTAQ 475
Query: 227 FGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGAS 270
GS T+ +G++ST + +S +G++ +G++ T +G++
Sbjct: 476 KGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGST 519
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 169/378 (44%), Gaps = 68/378 (17%)
Query: 2 FGSTNPFGQSSS--SPFGSQSIFGQNNNAS----NNPFAPKPFGTTTPFGSTG-----SS 50
+GST G SS + +GS G+ + + + A K T +GSTG SS
Sbjct: 308 YGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSS 367
Query: 51 IFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPA-FGASSTPSFGSSSSSFGGSS 109
+ G +G+ ++ SS T +GS+ A G+ T +GS+ +S SS
Sbjct: 368 LIAG-----YGSTQTAGEDSSLT-------AGYGSTQTAQKGSDLTAGYGSTGTSGADSS 415
Query: 110 IFGQKPAFGFGST------STQTSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQ--PA 158
+ G+GST STQT+ +GS TQ +Q GS L +GS+ G S
Sbjct: 416 LI-----AGYGSTQTAGEESTQTAGYGS-TQTAQK--GSDLTAGYGSTGTAGDDSSLIAG 467
Query: 159 FGATSTPAFGTSNPA-FGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGG 217
+G+T T G+ A +G+TST + ++ +G+T T +GST TA
Sbjct: 468 YGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTA------------- 514
Query: 218 AFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSF 277
+G++ T S + +G++ST +S +G++ ++ + T +G++
Sbjct: 515 GYGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGS 574
Query: 278 GSSPAFGQSTSAFSSSP----FGTSTSPFGAQSSPFGGQSTTPTFG-----STGFGQSTF 328
+ +G + +A S S +G STS GA SS G +T T G + G+G ST
Sbjct: 575 DLTAGYGSTGTAGSDSSIIAGYG-STSTAGADSSLIAGYGSTQTAGYNSILTAGYG-STQ 632
Query: 329 GGQRGGSRIAAYAPTTEA 346
+ G A Y T+ A
Sbjct: 633 TAEEGSDLTAGYGSTSTA 650
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 143/322 (44%), Gaps = 54/322 (16%)
Query: 44 FGSTGSSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSS 102
+GSTG++ T +G+ ++ SS +G++ + GS + A G ST + G+ S
Sbjct: 196 YGSTGTAGSDSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTA-GYGSTGTAGADS 254
Query: 103 S---SFGGSSIFGQKPAF--GFGSTSTQ------TSPFGSTTQQSQPAFGSSL---FGSS 148
S +G + G+ + G+GST T T+ +GS TQ +Q GS L +GS+
Sbjct: 255 SLIAGYGSTQTAGEDNSLTAGYGSTQTAGEDSSLTAGYGS-TQTAQK--GSDLTAGYGST 311
Query: 149 TPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGAS 208
GA S G ST G + T T +G+T G+ T +GSTGTA S
Sbjct: 312 GTAGADSSLIAGYGSTQTAGEES-----TQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 366
Query: 209 SAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFG 268
S A +G++ T SS T+ +G++ T G+ +G ST G
Sbjct: 367 SLIA-----GYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYG----------STGTSG 411
Query: 269 ASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTF 328
A S+ +GS+ G+ + T T+ +G+ + G T +GSTG T
Sbjct: 412 ADSSLIAGYGSTQTAGEES---------TQTAGYGSTQTAQKGSDLTAGYGSTG----TA 458
Query: 329 GGQRGGSRIAAYAPTTEAETGS 350
G S IA Y T A+ GS
Sbjct: 459 GDDS--SLIAGYGSTQTAQKGS 478
>sp|Q47879|ICEN_PANAN Ice nucleation protein InaU OS=Pantoea ananas GN=inaU PE=3 SV=1
Length = 1034
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 148/344 (43%), Gaps = 58/344 (16%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFG 61
+GST G+ S+ G +G A +G+T G S I G +G
Sbjct: 308 YGSTQTAGEESTQTAG----YGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAG------YG 357
Query: 62 APPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFG 120
+ ++ SS T +G++ + GS + A G ST + G+ SS G +G G
Sbjct: 358 STQTAGEDSSLTAGYGSTQTAQKGSDLTA-GYGSTGTAGADSSLIAG---YGSTQTAG-- 411
Query: 121 STSTQTSPFGSTTQQSQPAFGSSL---FGSSTPFG---------ASSQPA---------F 159
STQT+ +GST Q +Q GS L +GS+ G S+Q A +
Sbjct: 412 EESTQTAGYGST-QTAQK--GSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGY 468
Query: 160 GATSTPAFGTSNPA-FGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGA 218
G+T T G+ A +G+TST + ++ +G+T T +GST TA
Sbjct: 469 GSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTA-------------G 515
Query: 219 FGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFG 278
+G++ T S + +G++ST +S +G++ ++ + T +G++
Sbjct: 516 YGSTQTAQNESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSD 575
Query: 279 SSPAFGQSTSAFSSSPFGT---STSPFGAQSSPFGGQSTTPTFG 319
+ +G + +A +S T STS G SS G +T T G
Sbjct: 576 LTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAG 619
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 140/326 (42%), Gaps = 62/326 (19%)
Query: 41 TTPFGSTGSS------IFGGTSTGVFGAPPS-----------------SSPFSSATTFGA 77
T +GSTG++ I G ST G S ++ + S T GA
Sbjct: 241 TAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGA 300
Query: 78 SSS--PAFGSSMPA---------FGASSTPSFGSS-SSSFGGSSIFGQKPAF--GFGSTS 123
SS +GS+ A +G++ T GS ++ +G + G + G+GST
Sbjct: 301 DSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360
Query: 124 TQ------TSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQPAFGATSTPAFGTSNPAF 174
T T+ +GS TQ +Q GS L +GS+ GA S G ST G +
Sbjct: 361 TAGEDSSLTAGYGS-TQTAQK--GSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEES--- 414
Query: 175 GATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSA 234
T T +G+T G+ T +GSTGTA SS A +G++ T SS T+
Sbjct: 415 --TQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIA-----GYGSTQTAGEDSSLTAG 467
Query: 235 FGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSP 294
+G++ T G+ +G++S + +S +G++ + + +G + +A + S
Sbjct: 468 YGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESD 527
Query: 295 FGT---STSPFGAQSSPFGGQSTTPT 317
T STS GA SS G +T T
Sbjct: 528 LITGYGSTSTAGANSSLIAGYGSTQT 553
>sp|P49790|NU153_HUMAN Nuclear pore complex protein Nup153 OS=Homo sapiens GN=NUP153 PE=1
SV=2
Length = 1475
Score = 40.4 bits (93), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 118/243 (48%), Gaps = 27/243 (11%)
Query: 58 GVFGAPPSSSPFSSAT-TFGASSSP----AFGSSMPAFGASSTPSFGSSSSSFGGSSIFG 112
G+FG+ SSS AT FG SS+P AFG++ A ++S S S +S G
Sbjct: 1210 GIFGSSTSSSNPPVATFVFGQSSNPVSSSAFGNT--AESSTSQSLLFSQDSKLATTSSTG 1267
Query: 113 QKPA-FGFG----STSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAF 167
F FG S +T TS FG + + GSS + P S+ PAFGA TP F
Sbjct: 1268 TAVTPFVFGPGASSNNTTTSGFGFGATTTSSSAGSSFVFGTGPSAPSASPAFGANQTPTF 1327
Query: 168 GTSNPAFGATSTPAFGATSA--PAFGATSTPAFGSTGTAFGASSAPAFG---SGGAFGAS 222
G S A + P FG+ S+ F S PA + GT +S P FG S AFG+
Sbjct: 1328 GQSQGA-SQPNPPGFGSISSSTALFPTGSQPAPPTFGTVSSSSQPPVFGQQPSQSAFGSG 1386
Query: 223 STPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGA-SSTPAFGASSAGS--FSFGS 279
+TP SSS FG+S+T +++P S FGA SSTPA A +GS F F
Sbjct: 1387 TTP--NSSSAFQFGSSTTNFNFTNNSP----SGVFTFGANSSTPAASAQPSGSGGFPFNQ 1440
Query: 280 SPA 282
SPA
Sbjct: 1441 SPA 1443
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
SV=2
Length = 2085
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 79/166 (47%), Gaps = 40/166 (24%)
Query: 203 TAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGAS 262
TA S+ P FG A S+ +S+S FG +PAFGAS+ FG + AFG
Sbjct: 1672 TATAPSATPVFGQVAASITSTAAATPQASSSGFG---SPAFGASAPGVFGQT---AFG-- 1723
Query: 263 STPAFGASSAG-----SFS---FGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSP------ 308
TPAFG +++ SFS F S PAFGQS SS+P TS + FGA SS
Sbjct: 1724 QTPAFGQATSSPASGFSFSQPGFSSVPAFGQS---VSSTPASTSANVFGATSSTSSPGSF 1780
Query: 309 ------------FGGQSTTPTFG-STGFGQ--STFGGQRGGSRIAA 339
GQ+ P FG S GFGQ S FGG + AA
Sbjct: 1781 SFGQASTNTGGTLFGQNNPPAFGQSPGFGQGSSVFGGTSATTSTAA 1826
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 134/320 (41%), Gaps = 84/320 (26%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFG 61
FG T FGQ++SSP AS F+ F + FG + SS TS VFG
Sbjct: 1722 FGQTPAFGQATSSP------------ASGFSFSQPGFSSVPAFGQSVSSTPASTSANVFG 1769
Query: 62 APPS-----------SSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSI 110
A S +S + T FG ++ PAFG S P FG SS FGG+S
Sbjct: 1770 ATSSTSSPGSFSFGQASTNTGGTLFGQNNPPAFGQS---------PGFGQGSSVFGGTSA 1820
Query: 111 ---------FGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGA-------- 153
F A GFGS++T S FG FG S S FG+
Sbjct: 1821 TTSTAAPSGFSFCQASGFGSSNTG-SVFGQAANTGGSVFGQSSTSSGGVFGSGNATRGGG 1879
Query: 154 -----SSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGAS 208
+P+ A + F ++ FG+T+ P ++ FG + FG G++
Sbjct: 1880 FFSGLGGKPSQDAANKNPFSSAGGGFGSTAAP----NTSNLFGNSGAKTFGGFGSSSFGE 1935
Query: 209 SAPA--FGSGGAFGASSTPLFGSSSTSAFGASS---TPAFGASSAPAFGASSAPAFGASS 263
PA F SGG GS ++ FG S+ T FGA AP FG S P FG S
Sbjct: 1936 QKPAGTFSSGG----------GSVASQGFGFSTPNKTGGFGA--APVFG--SPPTFGGS- 1980
Query: 264 TPAFGASSAGSFSFGSSPAF 283
P FG G +FGS+PAF
Sbjct: 1981 -PGFG----GVPAFGSAPAF 1995
>sp|Q8K3Z9|PO121_MOUSE Nuclear envelope pore membrane protein POM 121 OS=Mus musculus
GN=Pom121 PE=1 SV=2
Length = 1200
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 132/280 (47%), Gaps = 86/280 (30%)
Query: 98 FGSSSSSFGGSSIFGQKPAFGFGSTSTQT--SPFGSTTQQSQPAFGSSLFGSSTPFGASS 155
FGS+ ++ + +P F +T T T PF S+ + + P + GA+S
Sbjct: 884 FGSTLTTSTSAPATTSQPTLTFSNTVTPTFNIPFSSSAKPALPTYP----------GANS 933
Query: 156 QPAFGATSTPAFGTSNPAFGATSTPAFGAT---------------SAPAFGATSTPAFG- 199
QP FGAT G + PA P+FG++ + FG+ + PAFG
Sbjct: 934 QPTFGATD----GATKPALA----PSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAFGG 985
Query: 200 --STGTAFGA--SSAPAFGSGGAFGASSTPLFGSSSTSAFG-------------ASSTPA 242
+ + FGA S+ PAFGS +S FGS++TS FG + S+ +
Sbjct: 986 LKAAASTFGAPASTQPAFGS-----TTSVFSFGSATTSGFGAAATAATTTQTTNSGSSSS 1040
Query: 243 FGASSAPA---FGASSAPA----FGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPF 295
SSAP+ FG S+APA FG S+TP +S++G+FSFGS GQS + +++ F
Sbjct: 1041 LFGSSAPSPFTFGGSAAPAGSGGFGLSATPGT-SSTSGTFSFGS----GQSGTPGTTTSF 1095
Query: 296 GTST----------SPFG------AQSSPFGGQSTTPTFG 319
G+ + SPF +S P G ++TPTFG
Sbjct: 1096 GSLSQNTLGAPSQGSPFAFSVGSTPESKPVFGGTSTPTFG 1135
>sp|Q96HA1|P121A_HUMAN Nuclear envelope pore membrane protein POM 121 OS=Homo sapiens
GN=POM121 PE=1 SV=2
Length = 1249
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 101/216 (46%), Gaps = 50/216 (23%)
Query: 51 IFGGTSTGVFGAPPSSSPFSSATTFGA--SSSPAFGSSMPAF-GASSTPSFGSSSS---- 103
IFGG + FG ++A+ FGA SS PAFG S F GA+++ FG+++
Sbjct: 1029 IFGGATHSAFGL------KATASAFGAPASSQPAFGGSTAVFFGAATSSGFGATTQTASS 1082
Query: 104 ---------------SFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGS- 147
+FGGS+ PA G GS + GS+T +FG+ GS
Sbjct: 1083 GSSSSVFGSTTPSPFTFGGSAA----PA-GSGSFGINVATPGSSTTTGAFSFGAGQSGST 1137
Query: 148 --STPF-GASSQPAFGATSTPAFGTSNP-AFGATSTPAFGATSAPAFGATSTPAFGSTGT 203
STPF G Q A G T G S P AF +ST S P FG T+TP FG
Sbjct: 1138 ATSTPFAGGLGQNALGTT-----GQSTPFAFNVSST----TESKPVFGGTATPTFGLNTP 1188
Query: 204 AFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASS 239
A G ++ GS +FGASS P G + FG+++
Sbjct: 1189 APGVGTS---GSSLSFGASSAPAQGFVGVAPFGSAA 1221
>sp|P16239|ICEN_ENTAG Ice nucleation protein OS=Enterobacter agglomerans GN=iceE PE=3
SV=1
Length = 1258
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 149/330 (45%), Gaps = 40/330 (12%)
Query: 38 FGTTTPFGSTGSSIFGGTSTGVFGAPPS-SSPFSSATTFGASSSPAFGSSMPAFGASSTP 96
+G+T G + + I G STG GA + + + S T G SS M +G++ T
Sbjct: 180 YGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQ-----MAGYGSTQTG 234
Query: 97 SFGSS-SSSFGGSSIFGQKPAF--GFGSTSTQ------TSPFGSTTQQSQPAFGSSL--- 144
GS ++ +G + G + G+GST T T+ +GS TQ +Q GS L
Sbjct: 235 MKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGS-TQTAQK--GSDLTAG 291
Query: 145 FGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTA 204
+GS+ GA S G ST G + T T +G+T G+ T +GSTGTA
Sbjct: 292 YGSTGTAGADSSLIAGYGSTQTAGEES-----TQTAGYGSTQTAQKGSDLTAGYGSTGTA 346
Query: 205 FGASSAPA-FGSGGAFGASS--TPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGA 261
SS A +GS G S T +GS+ T+ G+ T +G++ GA S+ G
Sbjct: 347 GDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTA--GADSSLIAGY 404
Query: 262 SSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFG-- 319
ST G S + +GS+ Q S ++ +G ST G SS G +T T G
Sbjct: 405 GSTQTAGEESTQTAGYGSTQTA-QKGSDL-TAGYG-STGTAGDDSSLIAGYGSTQTAGED 461
Query: 320 ---STGFGQSTFGGQRGGSRIAAYAPTTEA 346
+ G+G ST Q+G A Y T+ A
Sbjct: 462 SSLTAGYG-STQTAQKGSDLTAGYGSTSTA 490
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 165/395 (41%), Gaps = 70/395 (17%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFG 61
+GST G+ S+ G +G A +G+T G S I G +G
Sbjct: 308 YGSTQTAGEESTQTAG----YGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAG------YG 357
Query: 62 APPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFG 120
+ ++ SS T +G++ + GS + A G ST + G+ SS G +G G
Sbjct: 358 STQTAGEDSSLTAGYGSTQTAQKGSDLTA-GYGSTGTAGADSSLIAG---YGSTQTAG-- 411
Query: 121 STSTQTSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQ--PAFGATSTPAFGTSNPA-F 174
STQT+ +GST Q +Q GS L +GS+ G S +G+T T +S A +
Sbjct: 412 EESTQTAGYGST-QTAQK--GSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGY 468
Query: 175 GATSTPAFGATSAPAFGATSTPAF--------GSTGTA-FGASSAPAFGSGGAFGASSTP 225
G+T T G+ +G+TST + GST TA +G++ +GS S
Sbjct: 469 GSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESDL 528
Query: 226 LFGSSSTSAFGASS------------------TPAFGASSAPAFGASSAPAFGASST--- 264
+ G STS GA+S T +G++ G+ +G++ T
Sbjct: 529 ITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAGYGSTGTAGS 588
Query: 265 -----PAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGT---STSPFGAQSSPFGGQSTTP 316
+G++ S+ + +G + +A S T STS GA SS G +T
Sbjct: 589 DSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 648
Query: 317 TFG-----STGFGQSTFGGQRGGSRIAAYAPTTEA 346
T G + G+G ST Q G A Y T+ A
Sbjct: 649 TAGYNSILTAGYG-STQTAQEGSDLTAGYGSTSTA 682
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 140/326 (42%), Gaps = 62/326 (19%)
Query: 41 TTPFGSTGSS------IFGGTSTGVFGAPPS-----------------SSPFSSATTFGA 77
T +GSTG++ I G ST G S ++ + S T GA
Sbjct: 241 TAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGA 300
Query: 78 SSS--PAFGSSMPA---------FGASSTPSFGSS-SSSFGGSSIFGQKPAF--GFGSTS 123
SS +GS+ A +G++ T GS ++ +G + G + G+GST
Sbjct: 301 DSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360
Query: 124 TQ------TSPFGSTTQQSQPAFGSSL---FGSSTPFGASSQPAFGATSTPAFGTSNPAF 174
T T+ +GS TQ +Q GS L +GS+ GA S G ST G +
Sbjct: 361 TAGEDSSLTAGYGS-TQTAQK--GSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEES--- 414
Query: 175 GATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSA 234
T T +G+T G+ T +GSTGTA SS A +G++ T SS T+
Sbjct: 415 --TQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIA-----GYGSTQTAGEDSSLTAG 467
Query: 235 FGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSP 294
+G++ T G+ +G++S + +S +G++ + + +G + +A + S
Sbjct: 468 YGSTQTAQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYGSTQTAQNESD 527
Query: 295 FGT---STSPFGAQSSPFGGQSTTPT 317
T STS GA SS G +T T
Sbjct: 528 LITGYGSTSTAGANSSLIAGYGSTQT 553
>sp|O33479|ICEV_PSESX Ice nucleation protein OS=Pseudomonas syringae GN=inaV PE=3 SV=1
Length = 1196
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 39/212 (18%)
Query: 44 FGSTGSSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPA-FGASSTPSFGSS 101
+GST ++ +G T T +G+ ++ SS TT +G++S+ + SS+ A +G++ T + S+
Sbjct: 766 YGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYEST 825
Query: 102 SSSFGGSSIFGQKPA---FGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPA 158
++ GS+ Q+ + G+GSTST + SSL +G++
Sbjct: 826 LTAGYGSTQTAQERSDLVTGYGSTST-------------AGYASSLI---AGYGSTQTAG 869
Query: 159 FGATSTPAFGTSNPA---------FGATSTPAF--------GATSAPAFGATSTPAFGST 201
+ +T T +G++ A +G+TST F G+T + +T T +GST
Sbjct: 870 YESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGST 929
Query: 202 GTA-FGASSAPAFGSGGAFGASSTPLFGSSST 232
TA +G+S +GS G S+ + G ST
Sbjct: 930 QTAEYGSSLTAGYGSTATAGQDSSLIAGYGST 961
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 154/344 (44%), Gaps = 56/344 (16%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTP----------FGSTG--- 48
+GST G SS G +G A + +G+T +GSTG
Sbjct: 206 YGSTGTAGSDSSLVAG----YGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAG 261
Query: 49 --SSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSSSF 105
SS+ G +G+ +S SS T +G++ + GS++ A G ST + GS SS
Sbjct: 262 SDSSLIAG-----YGSTQTSGEDSSLTAGYGSTQTAQEGSNLTA-GYGSTGTAGSDSSLI 315
Query: 106 GGSSIFGQKPAFGFGSTSTQ------TSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAF 159
G+GST T T+ +GST + + +S +GS+ GA S
Sbjct: 316 -----------AGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIA 364
Query: 160 GATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPA-FGSGGA 218
G ST G S+ A T +G+T G+ T +GSTGTA SS A +GS
Sbjct: 365 GYGSTQTSG-SDSAL----TAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQT 419
Query: 219 FGASS--TPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFS 276
G+ S T +GS+ T+ G++ T +G++ +S +G ST G+ SA +
Sbjct: 420 SGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYG--STQTSGSDSALTAG 477
Query: 277 FGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGS 320
+GS+ + ++ ++ +G ST GA SS G +T T GS
Sbjct: 478 YGSTQTAQEGSNL--TAGYG-STGTAGADSSLIAGYGSTQTSGS 518
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 160/335 (47%), Gaps = 40/335 (11%)
Query: 22 FGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATT-FGASSS 80
+G N A N+ +G+T GS S + G +G+ ++ S+ T +G++ +
Sbjct: 190 YGSNETAGNHSDLIAGYGSTGTAGSDSSLVAG------YGSTQTAGGDSALTAGYGSTQT 243
Query: 81 PAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAF 140
GS++ A G ST + GS SS G +G G S+ T+ +GS TQ +Q
Sbjct: 244 AREGSNLTA-GYGSTGTAGSDSSLIAG---YGSTQT--SGEDSSLTAGYGS-TQTAQE-- 294
Query: 141 GSSL---FGSSTPFGASSQPAFGATSTPAFGTSNPAFGATS-TPAFGATSAPAFGATSTP 196
GS+L +GS+ G+ S G +G++ + G +S T +G+T G+ T
Sbjct: 295 GSNLTAGYGSTGTAGSDSSLIAG------YGSTQTSGGDSSLTAGYGSTQTAQEGSNLTS 348
Query: 197 AFGSTGTAFGASSAPA-FGSGGAFGASS--TPLFGSSSTSAFGASSTPAFGASSAPAFGA 253
+GSTGTA SS A +GS G+ S T +GS+ T+ G++ T +G++ G+
Sbjct: 349 GYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTA--GS 406
Query: 254 SSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQS 313
S+ G ST G+ S+ + +GS+ + ++ ++ +G ST G SS G
Sbjct: 407 DSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNL--TAGYG-STGTAGVDSSLIAGYG 463
Query: 314 TTPTFGS-----TGFGQSTFGGQRGGSRIAAYAPT 343
+T T GS G+G ST Q G + A Y T
Sbjct: 464 STQTSGSDSALTAGYG-STQTAQEGSNLTAGYGST 497
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 168/383 (43%), Gaps = 62/383 (16%)
Query: 2 FGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFG 61
+GST G SS G +G A +G+T G+ S I G +G
Sbjct: 318 YGSTQTSGGDSSLTAG----YGSTQTAQEGSNLTSGYGSTGTAGADSSLIAG------YG 367
Query: 62 APPSSSPFSSATT-FGASSSPAFGSSMPAFGASSTPSFGSSSS---SFGGSSIFGQKPAF 117
+ +S S+ T +G++ + GS++ A G ST + GS SS +G + G +
Sbjct: 368 STQTSGSDSALTAGYGSTQTAQEGSNLTA-GYGSTGTAGSDSSLIAGYGSTQTSGSDSSL 426
Query: 118 --GFGSTSTQ------TSPFGSTTQQSQPAFGSSL---FGSSTPFGASS--QPAFGATST 164
G+GST T T+ +GST SSL +GS+ G+ S +G+T T
Sbjct: 427 TAGYGSTQTAQEGSNLTAGYGST---GTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQT 483
Query: 165 PAFGTSNPA-FGATSTPAFGATSAPAFGATST--------PAFGSTGTAF-GASSAPAFG 214
G++ A +G+T T ++ +G+T T +GST TA G++ +G
Sbjct: 484 AQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYG 543
Query: 215 SGGAFGASSTPL--FGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSA 272
S G GA S+ + +GS+ TS +S T +G++ G+ +G ST GA+S
Sbjct: 544 STGTAGADSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQQGSVLTSGYG--STQTAGAASN 601
Query: 273 GSFSFGSSPAFGQSTSAFSSSPFGTS---------TSPFGAQSSPFGGQSTTPTFGSTGF 323
+ +GS+ G +F + +G++ T+ +G+ + G +GSTG
Sbjct: 602 LTTGYGSTGTAGH--ESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLVAGYGSTGT 659
Query: 324 GQSTFGGQRGGSRIAAYAPTTEA 346
S G S IA Y T A
Sbjct: 660 AGS------GSSLIAGYGSTQTA 676
>sp|P49686|NUP42_YEAST Nucleoporin NUP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP42 PE=1 SV=1
Length = 430
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 136/283 (48%), Gaps = 76/283 (26%)
Query: 82 AFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQP-AF 140
AFG P+FG ++T + G+++S+FG Q + +T S FG+T+ ++P AF
Sbjct: 39 AFG--RPSFGTANTMTGGTTTSAFG----MPQFGTNTGNTGNTSISAFGNTSNAAKPSAF 92
Query: 141 GSSLFGSSTPFGA---SSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPA 197
G+ FGSS P S+ AFGA P+FG+T A ATS P FG +
Sbjct: 93 GAPAFGSSAPINVNPPSTTSAFGA----------PSFGSTGFGAMAATSNP-FGKSP--- 138
Query: 198 FGSTGTAFGASSAPAFGSG--------------GAFG-ASSTPLFGSSSTSAFGASSTPA 242
GS G+AFG PAFG+ AFG AS+TPL ++TS FG+
Sbjct: 139 -GSMGSAFG---QPAFGANKTAIPSSSVSNSNNSAFGAASNTPL---TTTSPFGSLQ--- 188
Query: 243 FGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSS---SPFGT-- 297
+A +S++ AFG P FGA++ FG+ Q+TS S SPFGT
Sbjct: 189 ---QNASQNASSTSSAFGK---PTFGAATNTQSPFGTI----QNTSTSSGTGVSPFGTFG 238
Query: 298 ----STSPF-------GAQSSPFGGQSTTPTFGSTGFGQSTFG 329
+ SPF GA SSPF G +T+ + G S FG
Sbjct: 239 TNSNNKSPFSNLQSGAGAGSSPF-GTTTSKANNNNNVGSSAFG 280
>sp|O30611|ICEK_PSESX Ice nucleation protein OS=Pseudomonas syringae GN=inaK PE=3 SV=1
Length = 1148
Score = 37.7 bits (86), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 47/273 (17%)
Query: 44 FGSTGSSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPA-FGASSTPSFGSS 101
+GST ++ + T T +G+ ++ SS TT +G++S+ + SS+ A +G++ T + S+
Sbjct: 718 YGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYEST 777
Query: 102 SSSFGGSSIFGQKPA---FGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPA 158
++ GS+ Q+ + G+GSTST + SSL +G++
Sbjct: 778 LTAGYGSTQTAQERSDLVTGYGSTST-------------AGYASSLI---AGYGSTQTAG 821
Query: 159 FGATSTPAFGTSNPA---------FGATSTPAF--------GATSAPAFGATSTPAFGST 201
+ +T T +G++ A +G+TST F G+T + +T T +GST
Sbjct: 822 YESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGST 881
Query: 202 GTA-FGASSAPAFGSGGAFGASSTPL--FGSSSTSAF------GASSTPAFGASSAPAFG 252
TA +G+S +GS G S+ + +GSS TS G ST G S G
Sbjct: 882 QTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAG 941
Query: 253 ASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQ 285
S+ G ST G S S+GSS G
Sbjct: 942 YGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGH 974
>sp|P06620|ICEN_PSESY Ice nucleation protein OS=Pseudomonas syringae pv. syringae GN=inaZ
PE=1 SV=1
Length = 1200
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 125/273 (45%), Gaps = 47/273 (17%)
Query: 44 FGSTGSSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPA-FGASSTPSFGSS 101
+GST ++ + T T +G+ ++ SS TT +G++S+ + SS+ A +G++ T + S+
Sbjct: 770 YGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYEST 829
Query: 102 SSSFGGSSIFGQKPA---FGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPA 158
++ GS+ Q+ + G+GSTST + SSL +G++
Sbjct: 830 LTAGYGSTQTAQERSDLVTGYGSTST-------------AGYASSLI---AGYGSTQTAG 873
Query: 159 FGATSTPAFGTSNPA---------FGATSTPAF--------GATSAPAFGATSTPAFGST 201
+ +T T +G++ A +G+TST F G+T + +T T +GST
Sbjct: 874 YESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLISGYGSTQTAGYKSTLTAGYGST 933
Query: 202 GTA-FGASSAPAFGSGGAFGASSTPL--FGSSSTSAF------GASSTPAFGASSAPAFG 252
TA +G+S +GS G S+ + +GSS TS G ST G S G
Sbjct: 934 QTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAG 993
Query: 253 ASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQ 285
S+ G ST G S S+GSS G
Sbjct: 994 YGSSLTSGVRSTLTAGYGSNQIASYGSSLIAGH 1026
Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 36/292 (12%)
Query: 41 TTPFGSTG-----SSIFGGTSTGVFGAPPSSSPFSSATT-FGASSSPAFGSSMPAFGASS 94
T +GSTG SS+ G +G+ +S SS T +G++ + GS++ A G S
Sbjct: 255 TAGYGSTGTAGSDSSLIAG-----YGSTQTSGGDSSLTAGYGSTQTAQEGSNLTA-GYGS 308
Query: 95 TPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSL---FGSSTPF 151
T + GS SS G +G G S+ T+ +GS TQ +Q GS+L +GS+
Sbjct: 309 TGTAGSDSSLIAG---YGSTQT--SGGDSSLTAGYGS-TQTAQE--GSNLTAGYGSTGTA 360
Query: 152 GASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAP 211
G S G ST G S+ A T +G+T G+ T +GSTGTA SS
Sbjct: 361 GVDSSLIAGYGSTQTSG-SDSAL----TAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLI 415
Query: 212 A-FGSGGAFGASS--TPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFG 268
A +GS G+ S T +GS+ T+ G+ T +G++ +S +G ST G
Sbjct: 416 AGYGSTQTSGSDSSLTAGYGSTQTAQEGSILTAGYGSTGTAGVDSSLIAGYG--STQTSG 473
Query: 269 ASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGS 320
+ SA + +GS+ + ++ ++ +G ST GA SS G +T T GS
Sbjct: 474 SDSALTAGYGSTQTAQEGSNL--TAGYG-STGTAGADSSLIAGYGSTQTSGS 522
>sp|A8CG34|P121C_HUMAN Nuclear envelope pore membrane protein POM 121C OS=Homo sapiens
GN=POM121C PE=1 SV=2
Length = 1229
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 102/217 (47%), Gaps = 61/217 (28%)
Query: 44 FGSTGSSIFGGTSTG-VFGAPPSSSP-FSSAT---TFGASSSPAFGSSMPA--------- 89
FG S FG +T FGAP SS P F +T +FGA++S FG++
Sbjct: 1009 FGGATHSAFGLKATASAFGAPASSQPAFGGSTAVFSFGAATSSGFGATTQTASSGSSSSV 1068
Query: 90 ----------FGASSTP----SFGSSSSSFGGSSIFGQKPAFGFG-----STSTQTSPFG 130
FG S+ P SFG + ++ G S+ G AF FG ST+T T PF
Sbjct: 1069 FGSTTPSPFTFGGSAAPAGSGSFGINVATPGSSATTG---AFSFGAGQSGSTATST-PF- 1123
Query: 131 STTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAF 190
T Q A G++ G STPF AF ST S P FG T+TP FG
Sbjct: 1124 -TGGLGQNALGTT--GQSTPF------AFNVGST---TESKPVFGGTATPTFGQN----- 1166
Query: 191 GATSTPAFGSTGT--AFGASSAPA--FGSGGAFGASS 223
T P G++G+ +FGASSAPA F G FG+++
Sbjct: 1167 --TPAPGVGTSGSSLSFGASSAPAQGFVGVGPFGSAA 1201
>sp|P48837|NUP57_YEAST Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP57 PE=1 SV=1
Length = 541
Score = 37.0 bits (84), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 111/265 (41%), Gaps = 38/265 (14%)
Query: 29 SNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMP 88
SNN F KP G+T G S G ++ P +S FG S + ++
Sbjct: 7 SNNGFGNKPAGST------------GFSFGQNNNNTNTQPSASGFGFGGSQPNSGTATTG 54
Query: 89 AFGAS-STPSFGSSSSSFGGSSIFGQKPAFG---------FGSTSTQTSPFGSTTQQ-SQ 137
FGA+ +T +FGS+ S G +FG KPA G G+T+T T FG T Q Q
Sbjct: 55 GFGANQATNTFGSNQQSSTGGGLFGNKPALGSLGSSSTTASGTTATGTGLFGQQTAQPQQ 114
Query: 138 PAFGSSLFGSS------TPFGASSQ---PAFGATSTPAFGTSNPAFGATSTPAFGATSAP 188
G LFG+ FG S+Q G G++ G ST +A
Sbjct: 115 STIGGGLFGNKPTTTTGGLFGNSAQNNSTTSGGLFGNKVGSTGSLMGGNSTQNTSNMNAG 174
Query: 189 A-FGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASS 247
FGA +TG FG+ + +GG FG+ + FG S P ++
Sbjct: 175 GLFGAKPQNTTATTGGLFGSKPQGSTTNGGLFGSGTQNNNTLGGGGLFGQSQQPQ--TNT 232
Query: 248 APAFG--ASSAPAFGASSTPAFGAS 270
AP G S+ P+F A S P+ G++
Sbjct: 233 APGLGNTVSTQPSF-AWSKPSTGSN 256
>sp|P52591|PO121_RAT Nuclear envelope pore membrane protein POM 121 OS=Rattus norvegicus
GN=Pom121 PE=1 SV=1
Length = 1199
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 155 SQPAFGATSTPAFGTSNPAFGATSTPAFGAT-SAPAFGATSTPAFGSTGTAFGASSAPAF 213
S+P FG TSTP FG S PA P G T S+ +FGA STPA G G S AP+F
Sbjct: 1121 SKPVFGGTSTPTFGQSAPA------PGVGTTGSSLSFGAPSTPAQGFVGVGPFGSGAPSF 1174
Query: 214 GSGG 217
G
Sbjct: 1175 SIGA 1178
>sp|Q9V6B9|NUP54_DROME Probable nucleoporin Nup54 OS=Drosophila melanogaster GN=Nup54 PE=2
SV=1
Length = 610
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 56/106 (52%), Gaps = 21/106 (19%)
Query: 143 SLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFG--ATSTPAFGS 200
S FGS+T GA+S PA T+ FG+ ATS P APAFG ATSTPAFG+
Sbjct: 2 SFFGSNTSLGATSTPA--KTTGGLFGSPFGGTAATSQP------APAFGAQATSTPAFGA 53
Query: 201 --TGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFG 244
+AFGA GS A++ ++ TSAFG S AFG
Sbjct: 54 QPATSAFGA------GSAFGATAAAPAFGAATGTSAFGGS---AFG 90
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 49/108 (45%), Gaps = 29/108 (26%)
Query: 109 SIFGQKPAFGFGSTSTQT------SPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFG-- 160
S FG + G ST +T SPFG T SQPA PAFG
Sbjct: 2 SFFGSNTSLGATSTPAKTTGGLFGSPFGGTAATSQPA-----------------PAFGAQ 44
Query: 161 ATSTPAFGT--SNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFG 206
ATSTPAFG + AFGA S A + AT T AFG G+AFG
Sbjct: 45 ATSTPAFGAQPATSAFGAGSAFGATAAAPAFGAATGTSAFG--GSAFG 90
>sp|O15504|NUPL2_HUMAN Nucleoporin-like protein 2 OS=Homo sapiens GN=NUPL2 PE=1 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 180 PAFGATSAPAFGATSTPAFGSTGTAFGASSAP-----AFGSGGAFGASSTPLFGSSSTSA 234
PAFG FG++ F S G SS+ +F + F A+S S S +
Sbjct: 216 PAFG------FGSSQAATFMSPGFPVNNSSSDNAQNFSFKTNSGFAAAS-----SGSPAG 264
Query: 235 FGASSTPAFGASSAPAFGAS-SAPAFGASSTPAFG---ASSAGSFSFGSSPAFGQSTSAF 290
FG S+PAFGA+++ + G S SAPAFG FG +SA SFSF S A + F
Sbjct: 265 FG--SSPAFGAAASTSSGISTSAPAFG------FGKPEVTSAASFSFKSPAASSFGSPGF 316
Query: 291 SSSPFGTSTSPFGAQSSP-FGGQSTTPTFGSTG 322
S P +T P A +P FGG S+ FGS G
Sbjct: 317 SGLPASLATGPVRAPVAPAFGGGSSVAGFGSPG 349
>sp|P18127|ICEN_XANCT Ice nucleation protein OS=Xanthomonas campestris pv. translucens
GN=inaX PE=3 SV=1
Length = 1567
Score = 34.3 bits (77), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 52/378 (13%)
Query: 2 FGSTNPFGQSSS--SPFGSQSIFGQNNNAS----NNPFAPKPFGTTTPFGSTGSSIFGGT 55
+GST G S+ + +GS G +++ + + A K T +GSTG++ T
Sbjct: 910 YGSTGTAGADSTLIAGYGSTQTSGSDSSLTAGYGSTQTARKGSDMTAGYGSTGTAGADST 969
Query: 56 STGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAF-GASSTPSFGSSSSSFGGSSIFGQK 114
+G+ +S SS T +GS+ A G+ T +GS+ ++ S++
Sbjct: 970 LIAGYGSTQTSGSDSSLT-------AGYGSTQTAREGSDVTAGYGSTGTAGADSTLI--- 1019
Query: 115 PAFGFGSTSTQ------TSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFG 168
G+GST T T+ +GST Q + ++ +GS+ GA S G ST G
Sbjct: 1020 --AGYGSTQTAGSDSSLTAGYGSTQTARQGSDVTAGYGSTGTAGADSTLIAGYGSTQTAG 1077
Query: 169 TSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFG 228
+ + T +G+T G+ T +GSTGTA GA S+ G +G++ T +
Sbjct: 1078 SDSSL-----TAGYGSTQTARQGSDITAGYGSTGTA-GADSSLIAG----YGSTQTAGYD 1127
Query: 229 SSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTS 288
S+ T+ +G++ T +S +G++S +S +G++ ++ + +G + +
Sbjct: 1128 SNLTAGYGSTQTAREDSSLTAGYGSTSTAGHDSSLIAGYGSTQTAGYNSILTTGYGSTQT 1187
Query: 289 AFSSSP----FGTSTSPFGAQSSPFGGQSTTPTFG-----STGFGQSTFGGQR------- 332
A SS +G STS G S+ G +T T G + G+G ++ G
Sbjct: 1188 AQESSSLTAGYG-STSTAGYDSTLTAGYGSTQTAGYKSTLTAGYGSNSTAGHESSLIAGY 1246
Query: 333 GGSRIAAYAPTTEAETGS 350
G ++IA Y T A GS
Sbjct: 1247 GSTQIAGYESTLTAGYGS 1264
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 42/337 (12%)
Query: 2 FGSTNPFGQSSS--SPFGSQSIFGQNNNAS----NNPFAPKPFGTTTPFGSTGSSIFGGT 55
+GST G S+ S +GS G ++ + + A K T +GSTG++ G+
Sbjct: 286 YGSTATSGSDSAVISGYGSTQTAGSESSLTAGYGSTQTARKGSDITAGYGSTGTA---GS 342
Query: 56 STGVFGAPPSSSPFSSATTFGASSS--PAFGSSMPAF-GASSTPSFGSSSSSFGGSSIFG 112
+ + + + S T G+ SS +GS+ A G+ T +GS+ ++ S++
Sbjct: 343 DSALI------AGYGSTQTAGSESSLTAGYGSTQTARKGSDVTAGYGSTGTAGADSTLI- 395
Query: 113 QKPAFGFGSTSTQ------TSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPA 166
G+GST T T+ +GST Q + ++ +GS+ GA S G ST
Sbjct: 396 ----AGYGSTQTAGGESSLTAGYGSTQTARQGSDITAGYGSTGTAGADSTLIAGYGSTQT 451
Query: 167 FGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPL 226
G+ + T +G+T G+ T +GSTGTA SS A +G++ T
Sbjct: 452 SGSDSSL-----TAGYGSTQTARKGSDITAGYGSTGTAGSDSSLIA-----GYGSTQTAG 501
Query: 227 FGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQS 286
SS T+ +G++ T +S +G++S +S +G++ + + +G +
Sbjct: 502 SESSLTAGYGSTQTAQQDSSLTTGYGSTSTAGHDSSLIAGYGSTQTAGYDSTLTAGYGST 561
Query: 287 TSAFSSSPFGT---STSPFGAQSSPFGGQSTTPTFGS 320
+A S T STS GA S+ G +T T GS
Sbjct: 562 QTAQQDSSLTTGYGSTSTAGADSTLIAGYGSTQTAGS 598
>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1
Length = 599
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 53 GGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFG 112
GGTSTG FS T GASS+P+ G + G++STP+ S+ SS G+ +FG
Sbjct: 20 GGTSTG--------GVFSFGT--GASSNPSVGLNFGNLGSTSTPATTSAPSSGFGTGLFG 69
Query: 113 QKPAFGF 119
KPA GF
Sbjct: 70 SKPATGF 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,455,754
Number of Sequences: 539616
Number of extensions: 19032864
Number of successful extensions: 114957
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 1801
Number of HSP's that attempted gapping in prelim test: 60953
Number of HSP's gapped (non-prelim): 18306
length of query: 996
length of database: 191,569,459
effective HSP length: 127
effective length of query: 869
effective length of database: 123,038,227
effective search space: 106920219263
effective search space used: 106920219263
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)