Query 001920
Match_columns 996
No_of_seqs 378 out of 541
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 04:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q5x_A Nuclear pore complex pr 100.0 2.7E-57 9.1E-62 450.5 14.0 151 828-980 3-155 (155)
2 1ko6_A Nuclear pore complex pr 100.0 7.6E-53 2.6E-57 428.8 14.1 146 826-973 40-187 (187)
3 3kep_A Nucleoporin NUP145; nuc 100.0 8.4E-52 2.9E-56 416.6 14.2 147 826-975 14-168 (174)
4 3pbp_B Nucleoporin NUP116/NSP1 100.0 2E-51 6.9E-56 405.4 15.9 141 831-975 2-146 (148)
5 3nf5_A Nucleoporin NUP116; nuc 100.0 2.2E-51 7.4E-56 410.3 15.2 142 828-975 10-157 (164)
6 3mmy_B Nuclear pore complex pr 99.5 2.1E-15 7.3E-20 125.6 1.3 51 334-385 2-56 (56)
7 1ko6_B Nuclear pore complex pr 88.8 0.1 3.4E-06 45.2 0.6 14 974-987 1-14 (64)
8 2yh0_A Splicing factor U2AF 65 43.8 38 0.0013 32.5 6.4 44 856-900 41-86 (198)
9 2lna_A AFG3-like protein 2; st 40.9 58 0.002 30.0 6.8 73 868-961 16-95 (99)
10 3lvj_C Sulfurtransferase TUSA; 40.3 23 0.00079 31.1 3.8 32 941-972 49-80 (82)
11 3m6y_A 4-hydroxy-2-oxoglutarat 35.0 12 0.00042 40.1 1.4 68 839-949 195-271 (275)
12 2vld_A NUCS, UPF0286 protein p 33.4 1.4E+02 0.0047 32.0 9.1 68 831-904 3-72 (251)
13 3m0z_A Putative aldolase; MCSG 32.5 11 0.00036 40.2 0.4 67 839-948 172-247 (249)
14 2ffg_A YKUJ; structural genomi 32.1 33 0.0011 31.5 3.4 25 956-980 38-66 (87)
15 1whj_A 1700024K14RIK, riken cD 31.8 18 0.00062 33.9 1.8 42 832-879 9-50 (102)
16 2g4b_A Splicing factor U2AF 65 29.1 71 0.0024 29.8 5.5 60 856-921 41-102 (172)
17 2qz7_A Uncharacterized protein 28.9 20 0.00067 36.9 1.6 74 875-970 94-170 (194)
18 3hz7_A Uncharacterized protein 27.3 39 0.0013 30.2 3.1 32 940-971 40-71 (87)
19 3bjk_A Acyl-COA thioester hydr 26.1 1E+02 0.0035 28.5 6.0 62 868-933 64-132 (153)
20 2kxs_A Tight junction protein 25.6 76 0.0026 31.5 5.1 52 905-978 86-137 (146)
21 1jdq_A TM006 protein, hypothet 25.4 49 0.0017 30.3 3.5 31 941-971 65-96 (98)
22 3d2w_A TAR DNA-binding protein 22.5 58 0.002 28.3 3.2 56 839-899 24-81 (89)
23 3ibz_A Putative tellurium resi 21.2 23 0.00077 36.4 0.4 40 875-920 92-133 (191)
24 3kyh_C MRNA-capping enzyme sub 20.8 33 0.0011 39.8 1.6 44 860-904 238-290 (461)
No 1
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=100.00 E-value=2.7e-57 Score=450.46 Aligned_cols=151 Identities=41% Similarity=0.751 Sum_probs=139.3
Q ss_pred CcCCCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCceEEEccceEEEccCCCCCCCCC
Q 001920 828 KLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVG 907 (996)
Q Consensus 828 kL~~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~IV~f~~r~V~VYpdd~~KPpvG 907 (996)
+|+++||||+||||||++|.+++ + +++|+||+|||+|||+|+|++||||++||||+||+|++|+|+||||++.|||+|
T Consensus 3 ~l~~~~Y~~~PsieeL~~~~~~~-~-~~~V~~FtVgR~gyG~I~f~~pvDl~~ldLd~IV~~~~~~v~VYpd~~~KPpvG 80 (155)
T 2q5x_A 3 ILTKVGYYTIPSMDDLAKITNEK-G-ECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVG 80 (155)
T ss_dssp BCCSTTEEEESCHHHHHHHSCTT-S-CCEEEEEEEEETTTEEEEEEEEEECTTCBHHHHEEEETTEEEECC----CCCTT
T ss_pred EEeCCCeEEcCCHHHHHhhhhhc-c-ccEECCEEEEeeeEEEEEeCcceeeccCCcccEEEEccCEEEEeCCCCCCCCCC
Confidence 69999999999999999996543 3 349999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceEEEEecceecCCCCCcccCCCchHH--HHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccccCCCC
Q 001920 908 QGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGD 980 (996)
Q Consensus 908 eGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~--k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~YGl~d 980 (996)
+||||||+|||+||||+||+++++|+|++++. +|+++|||+|+++|++||+||+++|+|+|+|+|||+|||+|
T Consensus 81 ~GLN~~A~ITL~~~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d 155 (155)
T 2q5x_A 81 EGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155 (155)
T ss_dssp BTTBSCEEEEECSCCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred CCcCcCEEEEEeeeEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence 99999999999999999999999999987754 49999999999999999999999999999999999999987
No 2
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=100.00 E-value=7.6e-53 Score=428.83 Aligned_cols=146 Identities=40% Similarity=0.725 Sum_probs=138.0
Q ss_pred CCCcCCCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCceEEEccceEEEccCCCCCCC
Q 001920 826 MPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPP 905 (996)
Q Consensus 826 ~PkL~~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~IV~f~~r~V~VYpdd~~KPp 905 (996)
.|+|+++||||+||||||++|.+++ + |++|+||+|||+|||+|+|++||||++||||+||+|++|+|+||||+..|||
T Consensus 40 g~~L~~~~Y~~~PSieeL~~~~~~~-~-l~~V~~FtVGR~gyG~I~f~~pVDL~~ldLd~IV~f~~k~v~VYpd~~~KPp 117 (187)
T 1ko6_A 40 GIILTKVGYYTIPSMDDLAKITNEK-G-ECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPP 117 (187)
T ss_dssp CCBCCSTTEEEESCHHHHHHHSCTT-S-CCEESSEEEEETTTEEEEECSCEECTTCBHHHHEEEETTEEEESSSTTSCCC
T ss_pred CceecCCCeeECCCHHHHHhhcchh-h-hceecceEEEeeeEEEEEeCCceeeccCCcceEEEeccCEEEEeCCCCCCCC
Confidence 3489999999999999999998543 3 5599999999999999999999999999999999999999999999999999
Q ss_pred CCccCccceEEEEecceecCCCCCcccCCCchHH--HHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcc
Q 001920 906 VGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHF 973 (996)
Q Consensus 906 vGeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~--k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HF 973 (996)
+|+||||||+|||+||||+||+++++|+|+.++. +|+++|+|+++++|++||+||+++|+|+|+|+||
T Consensus 118 vG~GLN~pA~ITL~~~~P~dk~~~~~i~d~~~~~~~~~~~~l~r~~~~~ga~FvsYd~~tG~W~F~V~HF 187 (187)
T 1ko6_A 118 VGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF 187 (187)
T ss_dssp TTSTTSSCEEEEECSCCCCCTTTCSCCCCHHHHHHHTHHHHHHHHHHHTTCEEEEEEGGGTEEEEEESCC
T ss_pred CCCCcCcCEEEEEeeeEecCCCCCccccCcchhhHHHHHHHHHHHHhcCCCEEEEEeCCCcEEEEEeccC
Confidence 9999999999999999999999999999876654 6999999999999999999999999999999999
No 3
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=100.00 E-value=8.4e-52 Score=416.59 Aligned_cols=147 Identities=33% Similarity=0.610 Sum_probs=128.5
Q ss_pred CCCcCCCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCC--CCCc-----eEEEc-cceEEEc
Q 001920 826 MPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRL--DLES-----LVQFN-NREVIVY 897 (996)
Q Consensus 826 ~PkL~~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~l--DLD~-----IV~f~-~r~V~VY 897 (996)
.|||+++||||+||||||++|+++| |++|+||+|||+|||+|+|++||||++| |||+ ||+|+ +|+|+||
T Consensus 14 ~~kl~~~gY~~~PSleeL~~ms~~~---L~~V~nFtVGR~gyG~I~F~~pVDLs~l~~DLd~~l~g~IV~f~~~~~v~VY 90 (174)
T 3kep_A 14 HEKSSSFGYWCSPSPEQLERLSLKQ---LAAVSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVEVY 90 (174)
T ss_dssp ------CCEEEESCHHHHHTSCTTG---GGSBSSCEEEETTTEEEEESSCBCCGGGTTCHHHHHBTTTEEEETTTEEEEC
T ss_pred cceeCCCCEEEcCCHHHHHhcCHHH---hcccCCeEEeeceEEEEEeCCcEEhhhcccchhhhcCCcEEEECCCCEEEEe
Confidence 4699999999999999999999876 9999999999999999999999999999 8994 99999 9999999
Q ss_pred cCCCCCCCCCccCccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccc
Q 001920 898 MDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSE 975 (996)
Q Consensus 898 pdd~~KPpvGeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~ 975 (996)
||++.|||+|+||||||+|||+||||+||+++++|+|+.++++++++|+|+.+++|++||+||+++|+|+|+|+||-.
T Consensus 91 pd~~~KPpvG~GLNvpA~ITL~~~~P~dk~t~~pi~d~~~l~~~~~~i~rLk~~~g~~FisYd~~tG~W~F~V~H~~~ 168 (174)
T 3kep_A 91 PDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHFEG 168 (174)
T ss_dssp CSTTTCCCTTSTTCSCEEEEESSCCCC----CCCCCCTTCHHHHHHHHHHHHHCSSSEEEEEETTTTEEEEEESCCC-
T ss_pred CCCCCCCCCCCCcCcCEEEEEeeeEeCCCCCCccccCchhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEEecccC
Confidence 999999999999999999999999999999999999988776676667777778999999999999999999999953
No 4
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=100.00 E-value=2e-51 Score=405.36 Aligned_cols=141 Identities=30% Similarity=0.548 Sum_probs=131.0
Q ss_pred CCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCc----eEEEccceEEEccCCCCCCCC
Q 001920 831 RSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLES----LVQFNNREVIVYMDDSKKPPV 906 (996)
Q Consensus 831 ~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~----IV~f~~r~V~VYpdd~~KPpv 906 (996)
++||||+||||||++|+++| |++|+||+|||+|||+|+|++||||++||||+ ||+|++|+|+||||++.|||+
T Consensus 2 ~~~Y~~~PsleeL~~m~~~~---l~~V~~F~VGR~gyG~I~f~~pVDL~~l~Ld~i~g~iV~f~~~~v~VYpd~~~KPp~ 78 (148)
T 3pbp_B 2 NENYYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPKR 78 (148)
T ss_dssp CTTEEEESCHHHHHHSCSST---TSSBCSCEEEETTTEEEEESSCBCCTTSCTTHHHHTSEEEETTEEEESCSSCCCCCT
T ss_pred CCCeEEcCCHHHHHhcCHHH---hccCCCeEEEeccEEEEEeCCceeccccChhhhcCCEEEEecCEEEEeCCccCCCCC
Confidence 68999999999999999876 99999999999999999999999999999998 999999999999999999999
Q ss_pred CccCccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccc
Q 001920 907 GQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSE 975 (996)
Q Consensus 907 GeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~ 975 (996)
|+||||||+|||+||||+||+++++|+|+.+ .+++++|+|+++++|++||+||+++|+|+|+|+||..
T Consensus 79 G~GLN~pA~ITL~~~~P~dk~t~~~i~d~~~-~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~~ 146 (148)
T 3pbp_B 79 GEGINVRARITCFNCYPVDKSTRKPIKDPNH-QLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAAE 146 (148)
T ss_dssp TSTTCSCEEEEESCCCCBCTTTCCBCCCTTS-HHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSCC
T ss_pred CCCcCcCEEEEEeeeEcCCCCCcccccCcch-HHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeeee
Confidence 9999999999999999999999999998643 4455555566668999999999999999999999973
No 5
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=100.00 E-value=2.2e-51 Score=410.26 Aligned_cols=142 Identities=35% Similarity=0.592 Sum_probs=134.5
Q ss_pred CcCCCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCc----eEEEccceEEEccCCCCC
Q 001920 828 KLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLES----LVQFNNREVIVYMDDSKK 903 (996)
Q Consensus 828 kL~~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~----IV~f~~r~V~VYpdd~~K 903 (996)
+|+++||||+||||||++|+++| |++|+||+|||+|||+|+|++||||++||||+ ||+|++|+|+||||++.|
T Consensus 10 ~lt~~~Y~~~PSleeL~~m~~~~---l~~V~nFtVGR~gyG~I~F~~pVDL~~ldLd~i~g~iV~f~~k~v~VYpd~~~K 86 (164)
T 3nf5_A 10 EFVDENYYISPSLDTLATLSKYE---IQKVENLVVGNKQYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYNNSTNV 86 (164)
T ss_dssp CCCCCSEEEESCHHHHHHCCHHH---HTSBCSCEEEETTTEEEEESSCBCCTTCCGGGTBTTTEEEETTEEEESTTCSCC
T ss_pred EEecCCEEEcCCHHHHHhcCHHH---hCcCCCeEEeeceEEEEEeCCceeccccChhHhcCCEEEEecCEEEEeCCcCCC
Confidence 68999999999999999999887 99999999999999999999999999999998 999999999999999999
Q ss_pred CCCCccCccceEEEEecceecCCCCCcccCCC--chHHHHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccc
Q 001920 904 PPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEG--PKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSE 975 (996)
Q Consensus 904 PpvGeGLNkpA~ITL~n~~p~dk~t~~~i~d~--~~~~k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~ 975 (996)
||+|+||||||+|||+||||+||+++++|+|+ +++++|++|||+ ++|++||+||+++|+|+|+|+||-.
T Consensus 87 PpvG~GLNvpA~ITL~~~~P~dk~t~~pi~d~~~~~~~~~i~rLk~---~~g~~FvsYd~~tG~W~F~V~H~~~ 157 (164)
T 3nf5_A 87 PEKGKGLNVRARISCYNCYPLDKSTRKPIKDPNHRIMERYSEKLKK---IPHTHFESYDPASGTYCFTVDHALE 157 (164)
T ss_dssp CCTTSTTCSCEEEEECSCCCBCTTTCCBCCCTTSTHHHHHHHHHHH---CTTCEEEEEETTTTEEEEEESSTTC
T ss_pred CCCCCCcCcCEEEEEeeeEcCCCCCCccccCcchHHHHHHHHHHhc---cCCCEEEEEeCCCcEEEEEEccccc
Confidence 99999999999999999999999999999985 456777777777 6899999999999999999999953
No 6
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.51 E-value=2.1e-15 Score=125.64 Aligned_cols=51 Identities=39% Similarity=0.578 Sum_probs=43.1
Q ss_pred CCccccCCcCCcCcCCC----CCCCCcceeeeeccccccCCChhhhhhhhhcCCCC
Q 001920 334 GSRIAAYAPTTEAETGS----ASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDK 385 (996)
Q Consensus 334 GT~~~~f~p~te~ds~~----~~~~~~k~qSIsam~~Y~~kS~EELRweDYQ~Grk 385 (996)
||.+ +|+|+.++|+.. ......+||||++|++|++||+||||||||++|||
T Consensus 2 gt~v-kf~p~~~tdt~~~~g~~~~~~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk 56 (56)
T 3mmy_B 2 GTTI-KFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 56 (56)
T ss_dssp CSCS-CCCCCEEEEEC-----CCEEEEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred Cccc-cccccccccchhhcCCCCccceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence 6667 799999998653 12234699999999999999999999999999997
No 7
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=88.84 E-value=0.1 Score=45.24 Aligned_cols=14 Identities=36% Similarity=0.779 Sum_probs=12.1
Q ss_pred cccCCCCCCCccch
Q 001920 974 SEYKLGDEDKQDDQ 987 (996)
Q Consensus 974 S~YGl~dddded~~ 987 (996)
|||||.|+||||++
T Consensus 1 SKYGL~DSDEEEe~ 14 (64)
T 1ko6_B 1 SKYGLQDSDEEEEE 14 (64)
T ss_pred CCcCccccchhhhc
Confidence 79999999988764
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=43.78 E-value=38 Score=32.50 Aligned_cols=44 Identities=7% Similarity=0.275 Sum_probs=29.4
Q ss_pred cccCeEEee-eeeEEEEeCccccccC-CCCCceEEEccceEEEccCC
Q 001920 856 RVKDFVVGR-HGYGSIKFLGETDVRR-LDLESLVQFNNREVIVYMDD 900 (996)
Q Consensus 856 ~V~nFtVGR-~GyG~I~FlgpVDL~~-lDLD~IV~f~~r~V~VYpdd 900 (996)
.|.+-.++| +||+-|+|..+-|... |.|+.. .|..+.|.|-...
T Consensus 41 ~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~-~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 41 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGI-IFQGQSLKIRRPH 86 (198)
T ss_dssp SEEEEEEETTTTEEEEEESCSHHHHHHGGGTTE-EETTEEEEEECCC
T ss_pred ceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCC-EEcCceEEEeCCC
Confidence 456666663 6899999998877643 455554 3577777776543
No 9
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=40.93 E-value=58 Score=29.95 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=43.7
Q ss_pred EEEEeCccc-c-ccCCCCCceEEEccceEEEccCCCCCCCCCccCccceEEEEecceecCCCCCcccCCCchHHHHHHHH
Q 001920 868 GSIKFLGET-D-VRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEML 945 (996)
Q Consensus 868 G~I~FlgpV-D-L~~lDLD~IV~f~~r~V~VYpdd~~KPpvGeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~L 945 (996)
-+|.|.+-. + |..=++++||.++++.|.||-.....+ +-+.. +++ + | ..++.|+++|
T Consensus 16 ~eIs~~eF~~~~L~kG~V~kI~V~nk~~v~V~l~~~a~~----~~~~~--~~f-~-----------I---GSvd~FE~~L 74 (99)
T 2lna_A 16 REITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTP----VDGQY--VWF-N-----------I---GSVDTFERNL 74 (99)
T ss_dssp EECCHHHHHHHTGGGTCEEEEEEETTTEEEEEECTTTSC----STTCC--EEE-E-----------C---SCHHHHHHHH
T ss_pred cccCHHHHHHHHhhCCCceEEEEEcCCEEEEEEcCCCcC----CCCce--EEE-E-----------e---CCHHHHHHHH
Confidence 356676655 2 333467888888999999997543322 11111 111 0 1 2478899999
Q ss_pred HHHhhhCCCe-----EEEEeC
Q 001920 946 KRKAEDQGAE-----FISYDP 961 (996)
Q Consensus 946 kk~te~~Ga~-----FvsYD~ 961 (996)
++.-++.+.. -|.|..
T Consensus 75 e~aQ~el~i~~~~~ipV~Y~~ 95 (99)
T 2lna_A 75 ETLQQELGIEGENRVPVVYIA 95 (99)
T ss_dssp HHHHHHTTCCTTTCCCEEECC
T ss_pred HHHHHHcCCCcccccCeEEee
Confidence 9987777654 456643
No 10
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=40.33 E-value=23 Score=31.14 Aligned_cols=32 Identities=3% Similarity=0.016 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhCCCeEEEEeCCCcEEEEEECc
Q 001920 941 YKEMLKRKAEDQGAEFISYDPIKGEWKFSVNH 972 (996)
Q Consensus 941 ~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~H 972 (996)
.++.|.+.|+++|.+++..+.+.|.|+|.|.+
T Consensus 49 a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~K 80 (82)
T 3lvj_C 49 TTRDIPGFCTFMEHELVAKETDGLPYRYLIRK 80 (82)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSSSEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCEEEEEEEE
Confidence 45677788888999999999899999999864
No 11
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=35.05 E-value=12 Score=40.10 Aligned_cols=68 Identities=28% Similarity=0.453 Sum_probs=41.8
Q ss_pred CHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCc---eEEEc----cceEE--EccCCCCCCCCCcc
Q 001920 839 RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLES---LVQFN----NREVI--VYMDDSKKPPVGQG 909 (996)
Q Consensus 839 SieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~---IV~f~----~r~V~--VYpdd~~KPpvGeG 909 (996)
.+|||+.|.++ |. |+|+ |+||+- +||||+ ||+|. -+.|+ ||-
T Consensus 195 ~leEl~avAkA----ca--------~~g~----~lEPTG--GIdl~Nf~~I~~i~l~aGv~~viPHIYs----------- 245 (275)
T 3m6y_A 195 HEEEYRAVAKA----CA--------EEGF----ALEPTG--GIDKENFETIVRIALEANVEQVIPHVYS----------- 245 (275)
T ss_dssp THHHHHHHHHH----HH--------HHTC----EEEEBS--SCCTTTHHHHHHHHHHTTCSCBCCEECG-----------
T ss_pred cHHHHHHHHHH----HH--------HcCc----eECCCC--CccHhHHHHHHHHHHHcCCCeecccccc-----------
Confidence 58999998765 63 3555 777763 566664 55443 22222 332
Q ss_pred CccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHh
Q 001920 910 LNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKA 949 (996)
Q Consensus 910 LNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~t 949 (996)
.-+||.||+ +.++++++..++||++-
T Consensus 246 ------------SIIDk~TG~--TrpedV~~ll~~~K~l~ 271 (275)
T 3m6y_A 246 ------------SIIDKETGN--TKVEAVRELLAVVKKLV 271 (275)
T ss_dssp ------------GGBCTTTCC--BCHHHHHHHHHHHHHHH
T ss_pred ------------eeccCCCCC--CCHHHHHHHHHHHHHHH
Confidence 247999986 34456777777777764
No 12
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=33.44 E-value=1.4e+02 Score=32.01 Aligned_cols=68 Identities=9% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCC-CceEEEc-cceEEEccCCCCCC
Q 001920 831 RSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDL-ESLVQFN-NREVIVYMDDSKKP 904 (996)
Q Consensus 831 ~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDL-D~IV~f~-~r~V~VYpdd~~KP 904 (996)
+-.|...|+++|+...-.+- +++ ...+|= -+-++|.+.|...- .|+. |.||.|+ +..|.|+.|+..||
T Consensus 3 ~~~~~~~p~~~~~~~~~~~~---~~~-~~~~~v-~~~C~v~Y~GR~~s-~l~~~~rli~iK~DGsvlvH~~~~~~P 72 (251)
T 2vld_A 3 KVIIKENPSEEEIKELLDLA---EKH-GGVVTI-FARCKVHYEGRAKS-ELGEGDRIIIIKPDGSFLIHQNKKREP 72 (251)
T ss_dssp SEEEESSCCHHHHHHHHHHH---HHH-TCEEEE-EEEEEEEEESSSEE-EEEEEEEEEEECTTSCEEEECSSCSSC
T ss_pred cceeccCcCHHHHHHHHHHH---hcC-CCEEEE-EEEEEEEecccccc-cCCCCcEEEEEcCCCeEEEeCCCCCCC
Confidence 33478899999998653221 211 122222 34588999887632 2444 4577777 78999999987777
No 13
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=32.51 E-value=11 Score=40.21 Aligned_cols=67 Identities=27% Similarity=0.509 Sum_probs=40.4
Q ss_pred CHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCc---eEEEc----cceEE--EccCCCCCCCCCcc
Q 001920 839 RIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLES---LVQFN----NREVI--VYMDDSKKPPVGQG 909 (996)
Q Consensus 839 SieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~---IV~f~----~r~V~--VYpdd~~KPpvGeG 909 (996)
++|||+.|.++ |. |+|+ |+||+- +||||+ ||+|. -+.|+ ||-
T Consensus 172 ~l~E~~avAka----~a--------~~g~----~lEPTG--GIdl~N~~~I~~i~l~aGv~~viPHIYs----------- 222 (249)
T 3m0z_A 172 HRAEFEAVAKA----CA--------AHDF----WLEPTG--GIDLENYSEILKIALDAGVSKIIPHIYS----------- 222 (249)
T ss_dssp THHHHHHHHHH----HH--------HTTC----EEEEBS--SCCTTTHHHHHHHHHHHTCSCBCCBCCG-----------
T ss_pred cHHHHHHHHHH----HH--------HcCc----eECCCC--CccHhhHHHHHHHHHHcCCCeecccccc-----------
Confidence 58999998765 63 3555 777763 566664 55443 12222 221
Q ss_pred CccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHH
Q 001920 910 LNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRK 948 (996)
Q Consensus 910 LNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~ 948 (996)
.-+||.||+ +.++++++..++||++
T Consensus 223 ------------sIIDk~TG~--TrpedV~~ll~~~K~l 247 (249)
T 3m0z_A 223 ------------SIIDKASGN--TRPADVRQLLEMTKQL 247 (249)
T ss_dssp ------------GGBCTTTCC--BCHHHHHHHHHHHHHH
T ss_pred ------------eeccCCCCC--CCHHHHHHHHHHHHHh
Confidence 247999986 3345677777777765
No 14
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=32.06 E-value=33 Score=31.45 Aligned_cols=25 Identities=12% Similarity=0.301 Sum_probs=19.2
Q ss_pred EEEEeCCCcEEEEEE----CcccccCCCC
Q 001920 956 FISYDPIKGEWKFSV----NHFSEYKLGD 980 (996)
Q Consensus 956 FvsYD~~tGtW~F~V----~HFS~YGl~d 980 (996)
-|.||+++++|+.+| ++=.+|-++|
T Consensus 38 ~V~y~~~t~~F~L~~~~~~~~~~~fqFDn 66 (87)
T 2ffg_A 38 SVKYFEKNQTFELTVFQKGEKPNTYPFDN 66 (87)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEESC
T ss_pred EEEEecCCCeEEEEEecCCCcccccccCC
Confidence 479999999999863 4667777755
No 15
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=31.83 E-value=18 Score=33.86 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCcccccc
Q 001920 832 SDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVR 879 (996)
Q Consensus 832 ~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~ 879 (996)
.+|..+|....|..+. .+.|+...|.+ +.+|.|+|.++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~-~~vG~RV~V~g-----~~~GtVryvG~v~~~ 50 (102)
T 1whj_A 9 PNSDHTTSRAMLTSLG-LKLGDRVVIAG-----QKVGTLRFCGTTEFA 50 (102)
T ss_dssp CSSSCCSSSTTHHHHT-CCTTCEEEETT-----TEEEEEEEEEECSSS
T ss_pred CCCCCCCCcccchhhc-CcCCCEEEECC-----CCEEEEEEeeecCCC
Confidence 4566677665555433 34444444543 358999999999964
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=29.09 E-value=71 Score=29.81 Aligned_cols=60 Identities=7% Similarity=0.253 Sum_probs=35.4
Q ss_pred cccCeEEee-eeeEEEEeCccccccC-CCCCceEEEccceEEEccCCCCCCCCCccCccceEEEEecc
Q 001920 856 RVKDFVVGR-HGYGSIKFLGETDVRR-LDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNI 921 (996)
Q Consensus 856 ~V~nFtVGR-~GyG~I~FlgpVDL~~-lDLD~IV~f~~r~V~VYpdd~~KPpvGeGLNkpA~ITL~n~ 921 (996)
.|.+..++| +||+-|+|..+-|... |.|+..+ |..+.+.|-.....+++. ....|-+.|+
T Consensus 41 ~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~-~~g~~i~v~~~~~~~~~~-----~~~~l~v~nl 102 (172)
T 2g4b_A 41 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGII-FQGQSLKIRRPHDYQPLP-----GAHKLFIGGL 102 (172)
T ss_dssp SEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCE-ETTEECEEECCSSCCCCT-----TTTCEEEECC
T ss_pred ceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcE-ecCceeeecCCcccCCCC-----CCCEEEEEcC
Confidence 455666663 6999999998877643 3555543 566777665443333222 2445555564
No 17
>2qz7_A Uncharacterized protein SCO6318; APC7352, homologue of telluride resistance protein (TERD), S streptomyces coelicolor A3(2); 2.10A {Streptomyces coelicolor A3}
Probab=28.86 E-value=20 Score=36.94 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=37.9
Q ss_pred cccccCCC--CCceEEEccceEEEccCCCCCCCCCccCccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHhhhC
Q 001920 875 ETDVRRLD--LESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQ 952 (996)
Q Consensus 875 pVDL~~lD--LD~IV~f~~r~V~VYpdd~~KPpvGeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~te~~ 952 (996)
.|||..|+ +++||.. |.+|..+. +...|+== .|.|+|++ +++.|- +| .|.....+.
T Consensus 94 ~VdL~~lp~~v~rIv~~----v~i~~~~~-~q~F~~V~--~a~irl~d-------~g~el~------r~--~l~~~~~et 151 (194)
T 2qz7_A 94 TFELDRLSPSIARVIVG----VAIHQDNG-HKTFDDVS--NTGVVVAE-------GYRELL------TD--GFERVAGAT 151 (194)
T ss_dssp EECGGGSCTTEEEEEEE----EEECCTTS-CCCGGGST--TCEEEEEE-------TTEEEE------EE--CSGGGTTCS
T ss_pred EEEcccCCcCccEEEEE----EEecCCCC-CCChhhcC--CcEEEEEe-------CCceEE------EE--ecCCCCCCe
Confidence 37888874 5677763 66674432 23444433 37777765 122211 11 011112233
Q ss_pred CCeEEE-EeCCCcEEEEEE
Q 001920 953 GAEFIS-YDPIKGEWKFSV 970 (996)
Q Consensus 953 Ga~Fvs-YD~~tGtW~F~V 970 (996)
.+.+.+ |....|.|+|+-
T Consensus 152 A~v~gElYR~~~g~WKfrA 170 (194)
T 2qz7_A 152 AATVAEFTRNASGAWEFRE 170 (194)
T ss_dssp EEEEEEEEECSSCCEEEEE
T ss_pred EEEEEEEEEcCCCcEEEEE
Confidence 345554 665479999985
No 18
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=27.29 E-value=39 Score=30.22 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCCCcEEEEEEC
Q 001920 940 KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVN 971 (996)
Q Consensus 940 k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~ 971 (996)
...+.|.+.++++|.+++....+.|.|++.|.
T Consensus 40 ~a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~ 71 (87)
T 3hz7_A 40 ISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIV 71 (87)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECGGGCEEEEEE
T ss_pred cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence 35677888888899999999989999999883
No 19
>3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers, YCIA, structural GENO structure 2 function project, S2F; HET: CIT; 1.90A {Haemophilus influenzae rd KW20} PDB: 1yli_A*
Probab=26.05 E-value=1e+02 Score=28.53 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=33.0
Q ss_pred EEEEeCccccccC-CCCC-ceEEEccceEE----EccCCCCCCCCCc-cCccceEEEEecceecCCCCCcccC
Q 001920 868 GSIKFLGETDVRR-LDLE-SLVQFNNREVI----VYMDDSKKPPVGQ-GLNKPAEVTLLNIKCFDKKTGVQYK 933 (996)
Q Consensus 868 G~I~FlgpVDL~~-lDLD-~IV~f~~r~V~----VYpdd~~KPpvGe-GLNkpA~ITL~n~~p~dk~t~~~i~ 933 (996)
-+|.|+.|+-+-+ |.+. .|+++.++.+. ||.++.....-|+ .|=..|++++- ++|++ ++++.
T Consensus 64 ~~i~f~~pv~~gd~l~v~~~v~~~g~~s~~~~~~i~~~~~~~~~~g~~~l~a~a~~~~v---~vd~~-~r~~~ 132 (153)
T 3bjk_A 64 ESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFV---AVDNN-GRSRT 132 (153)
T ss_dssp EEEEECSCCCTTCEEEEEEEEEEECSSEEEEEEEEEEECSSSSSTTCEEEEEEEEEEEE---EBCTT-SCBCC
T ss_pred eeEEEeCCccCCCEEEEEEEEEEecCcEEEEEEEEEEcccCcccCCceEEEEEEEEEEE---EECCC-CCEee
Confidence 3899999987643 4444 46777777554 4443210111122 24445566654 45665 55543
No 20
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=25.56 E-value=76 Score=31.51 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCccCccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccccCC
Q 001920 905 PVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKL 978 (996)
Q Consensus 905 pvGeGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~YGl 978 (996)
|.|-.++||.++++-.|-+ ++..+...++ .. .|=.+.....+.|+||++|+-
T Consensus 86 P~G~~F~kPViL~iPHcA~--~~W~~v~~~g-----------------~~---~y~~~~~~~~v~vdhF~~f~~ 137 (146)
T 2kxs_A 86 PHGLKFLKPVELRLPHCDP--KTWQNKCLPG-----------------DP---NYLVGANCVSVLIDHFGSGSG 137 (146)
T ss_dssp SSSEEEEEEEEEEECCCCG--GGGSCCCCTT-----------------ST---TTTTTTSCEEEEEEEECCCSS
T ss_pred CCCCcCcCCEEEEcCcCCC--cCCEEeEeCC-----------------Cc---cEEecCCeEEEEeccccCccc
Confidence 5677889999999988742 2221111111 01 122355677789999999863
No 21
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=25.39 E-value=49 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhCCCeEEEEeCC-CcEEEEEEC
Q 001920 941 YKEMLKRKAEDQGAEFISYDPI-KGEWKFSVN 971 (996)
Q Consensus 941 ~~~~Lkk~te~~Ga~FvsYD~~-tGtW~F~V~ 971 (996)
.++.|.+.|+++|.+++....+ .|.|+|.|.
T Consensus 65 a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I~ 96 (98)
T 1jdq_A 65 SKERIPETVKKLGHEVLEIEEVGPSEWKIYIK 96 (98)
T ss_dssp HHHHHHHHHHHSSCCEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEecCCEEEEEEE
Confidence 3467778888899999999877 799999885
No 22
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=22.47 E-value=58 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=35.4
Q ss_pred CHHHHHHhhhcCCCccccccCeEEe--eeeeEEEEeCccccccCCCCCceEEEccceEEEccC
Q 001920 839 RIQELAAKERAEPGFCRRVKDFVVG--RHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMD 899 (996)
Q Consensus 839 SieeL~~ms~~e~g~L~~V~nFtVG--R~GyG~I~FlgpVDL~~lDLD~IV~f~~r~V~VYpd 899 (996)
+-++|..+= .+ +..|.+..|- .+|||-|+|..+-|...++-. -+.++.+.|.|-..
T Consensus 24 te~~L~~~F-~~---~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 24 TAEELQQFF-CQ---YGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNA 81 (89)
T ss_dssp CHHHHHHHH-TT---TSCEEEEECCSSCCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEEC
T ss_pred CHHHHHHHH-hc---cCCEEEEEEeeCCCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEc
Confidence 346676542 22 3345555554 369999999998887755433 45567777777643
No 23
>3ibz_A Putative tellurium resistant like protein TERD; structural genomics, stress protein, tellurium resistance; 1.78A {Streptomyces coelicolor A3}
Probab=21.17 E-value=23 Score=36.40 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=23.4
Q ss_pred cccccCC--CCCceEEEccceEEEccCCCCCCCCCccCccceEEEEec
Q 001920 875 ETDVRRL--DLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLN 920 (996)
Q Consensus 875 pVDL~~l--DLD~IV~f~~r~V~VYpdd~~KPpvGeGLNkpA~ITL~n 920 (996)
.|||..| ++++||.. |.+|..+..+...|+= ..|.|+|++
T Consensus 92 ~vdL~~lp~~v~rIv~~----vti~~~~~r~q~Fg~v--~~~~irv~d 133 (191)
T 3ibz_A 92 KINLATVPADIEKIVFP----VSIYDAENRQQSFGQV--RNAFIRVVN 133 (191)
T ss_dssp EEEGGGSCTTCCEEEEE----EEETTHHHHTCCGGGS--SSCEEEEEE
T ss_pred EEEcccCCcCceEEEEE----EEEcCccccCCCcccc--CCcEEEEEE
Confidence 3889888 47788763 6677543333444443 245666654
No 24
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=20.80 E-value=33 Score=39.76 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=20.7
Q ss_pred eEEeeeeeEEEEeCccccccCCCCCceEEE---------ccceEEEccCCCCCC
Q 001920 860 FVVGRHGYGSIKFLGETDVRRLDLESLVQF---------NNREVIVYMDDSKKP 904 (996)
Q Consensus 860 FtVGR~GyG~I~FlgpVDL~~lDLD~IV~f---------~~r~V~VYpdd~~KP 904 (996)
+.+|+....-++|. |.++..||+--+|++ ++.....|.|-+.||
T Consensus 238 Y~~Ggr~~~~lKwK-p~~~nTVDF~L~i~~~~~~~~~~~~~~~~~~y~dy~~~p 290 (461)
T 3kyh_C 238 YTAGGKDSLLLKWK-PEQENTVDFKLILDIPMVEDPSLPKDDRNRWYYNYDVKP 290 (461)
T ss_dssp CCSSSEEEEEEECC-CTTTCCCEEEEECCCC------------------CCSCC
T ss_pred CcCCCcCCCeEEEE-cCCCeeEEEEEEecccccCCCcccccccccccccccccc
Confidence 45543345567776 777777765433333 123456788888887
Done!