Your job contains 1 sequence.
>001923
MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY
DKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN
LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH
SYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRV
QQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGK
SNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQP
MEAVATSKVHHKLDPLELGKEYIDALSSTNEEATLDSIPATATSNQYITCRPTSKSSEKD
IATPSSRTSSSESTKPFSSPGSVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVP
NSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLEDMHH
LPPISSTPHLPHNLNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGF
ITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSL
DADAWEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDV
EHSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFSSSSSMDSDNFLGSHSFISSSVSKA
PTSVPPGFAVPNRAPPPGFSPHGTMQKPFDSSASHLRWTSAQAAGNSGPCGDIPFVDPAI
LEVGKGLQAIGLNNLGCDMRQTPSSQLNPFEHEARLQLLMQQSSSGYQNLRFQDYPMNRF
SPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYRNAHMSTGHLGSLKGVKSINDLGVSDL
MTNGGIGFNKFIPSYEDLKCQMSNSSNLYNRGFAM
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001923
(995 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085617 - symbol:AT3G45630 species:3702 "Arabi... 1398 5.3e-143 1
TAIR|locus:2056563 - symbol:AT2G28540 species:3702 "Arabi... 1091 1.3e-141 2
UNIPROTKB|E2QXU8 - symbol:CNOT4 "Uncharacterized protein"... 536 9.7e-58 4
RGD|1310318 - symbol:Cnot4 "CCR4-NOT transcription comple... 536 1.2e-57 4
UNIPROTKB|F1MAD6 - symbol:Cnot4 "Protein Cnot4" species:1... 526 2.0e-54 3
UNIPROTKB|F8VQP3 - symbol:CNOT4 "CCR4-NOT transcription c... 526 2.0e-54 3
UNIPROTKB|F1MWA7 - symbol:CNOT4 "Uncharacterized protein"... 526 5.2e-54 3
UNIPROTKB|E2QXU7 - symbol:CNOT4 "Uncharacterized protein"... 526 5.2e-54 3
SGD|S000000870 - symbol:MOT2 "Ubiquitin-protein ligase su... 542 1.6e-53 2
UNIPROTKB|E2QXU6 - symbol:CNOT4 "Uncharacterized protein"... 536 2.7e-53 2
MGI|MGI:1859026 - symbol:Cnot4 "CCR4-NOT transcription co... 526 3.4e-52 2
UNIPROTKB|D4ADF8 - symbol:Cnot4 "RCG28297" species:10116 ... 526 3.4e-52 2
UNIPROTKB|O95628 - symbol:CNOT4 "CCR4-NOT transcription c... 526 3.4e-52 2
POMBASE|SPAC16C9.04c - symbol:mot2 "CCR4-Not complex subu... 545 8.9e-52 1
UNIPROTKB|E1C4B3 - symbol:CNOT4 "Uncharacterized protein"... 545 2.3e-51 2
ZFIN|ZDB-GENE-090313-262 - symbol:si:dkey-230e6.2 "si:dke... 530 3.1e-51 4
UNIPROTKB|Q5ZJC9 - symbol:CNOT4 "Uncharacterized protein"... 542 5.2e-51 2
ZFIN|ZDB-GENE-040426-1164 - symbol:zgc:63566 "zgc:63566" ... 523 2.7e-50 4
UNIPROTKB|I3LC53 - symbol:LOC100622832 "Uncharacterized p... 526 1.0e-49 1
FB|FBgn0051716 - symbol:Cnot4 "Cnot 4 homologue" species:... 515 4.3e-47 2
CGD|CAL0000791 - symbol:NOT4 species:5476 "Candida albica... 472 1.9e-45 2
UNIPROTKB|Q59UI5 - symbol:NOT4 "Potential mRNA deadenylas... 472 1.9e-45 2
WB|WBGene00003827 - symbol:ntl-4 species:6239 "Caenorhabd... 492 1.6e-44 4
DICTYBASE|DDB_G0275005 - symbol:DDB_G0275005 "putative CC... 445 3.3e-41 5
TAIR|locus:2027262 - symbol:AT1G74870 species:3702 "Arabi... 156 3.8e-08 1
TAIR|locus:2097930 - symbol:AT3G48070 species:3702 "Arabi... 148 5.2e-07 1
TAIR|locus:2170708 - symbol:AT5G62910 species:3702 "Arabi... 147 5.7e-07 1
UNIPROTKB|C9JWN8 - symbol:TRIM5 "Tripartite motif-contain... 106 0.00011 1
CGD|CAL0003874 - symbol:PGA55 species:5476 "Candida albic... 129 0.00046 1
UNIPROTKB|Q59SG9 - symbol:PGA55 "Flocculin-like protein" ... 129 0.00046 1
UNIPROTKB|F1NJG9 - symbol:F1NJG9 "Uncharacterized protein... 97 0.00097 1
>TAIR|locus:2085617 [details] [associations]
symbol:AT3G45630 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00184
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
eggNOG:COG5175 EMBL:AL138657 HSSP:O95628 HOGENOM:HOG000085071
IPI:IPI00541447 PIR:T47503 RefSeq:NP_190149.1 UniGene:At.36006
ProteinModelPortal:Q9M1E4 SMR:Q9M1E4 IntAct:Q9M1E4
MINT:MINT-1366149 PaxDb:Q9M1E4 PRIDE:Q9M1E4
EnsemblPlants:AT3G45630.1 GeneID:823705 KEGG:ath:AT3G45630
TAIR:At3g45630 InParanoid:Q9M1E4 OMA:KPSAVEN PhylomeDB:Q9M1E4
ProtClustDB:CLSN2684762 Genevestigator:Q9M1E4 Uniprot:Q9M1E4
Length = 989
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 399/1037 (38%), Positives = 555/1037 (53%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
MSD EKTCPLCAEEMDLTDQQLKPC CGY+ICVWCW+HIM+MAEKD +EGRCPACRT Y
Sbjct: 1 MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
Query: 61 DKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN 120
DKEKIVGM + ER + +R+ K QK+KPK S+GR LT+VRV+QRNLVYI+GLP+N
Sbjct: 61 DKEKIVGMTVDQERLASEGNMDRK-KIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLN 119
Query: 121 LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180
LADEDLLQRKEYFGQYGKVLKVS+SRTATG IQ NN+C VYITY +E++AIRCIQSVH
Sbjct: 120 LADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVH 179
Query: 181 SYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRV 240
+ILDG+ L+ACFGTTKYCHAW+RN+ C+ DCLYLH+ GSQEDSFTKDEI+SA TR V
Sbjct: 180 GFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTR--V 237
Query: 241 QQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAK-NSSNIIENPNNGSCADIVAG 299
QQI GATN M RSG+ LPPP D Y + + ST PIAK SS + P + + +G
Sbjct: 238 QQITGATNTMQYRSGSMLPPPLDAYTSDS--STGNPIAKVPSSTSVSAPKSSPPSGS-SG 294
Query: 300 KSNSLPTAASWVMRVSA--TLPTNKNLSGPVRPPSNQPKAS-NGPQVPGTEV-------V 349
KS +LP AASW R++ +L T+ +G + NQ S NG T V V
Sbjct: 295 KSTALPAAASWGARLTNQHSLATSALSNGSL---DNQRSTSENGTLATSTVVTKAANGPV 351
Query: 350 STTISIQTV---QPMEAVATSKVHHKLDPLELGKEYIDALS----STNEEATLDSIPATA 402
S++ S+Q + ++++A L PL+ K +D S S N + + + I
Sbjct: 352 SSSNSLQKAPLKEEIQSLAEKSKPGVLKPLQQ-KIVLDPESKRTTSPNRDPSSNQISCLV 410
Query: 403 TS--NQYITCRPTS--KSSE--KDIAXXXXXXXXXXXXXX-XXXXXXVEDESSHIVMDFQ 455
S N + +P++ S E +IA DE+ + +
Sbjct: 411 ESSYNSRVIDKPSAVENSLEHTSEIAEDVFDVGKLSADVAWMGITTNSRDETPGVPVVI- 469
Query: 456 GLCCGLSSIGLESQFEKD-RSLPVVPNSSISK---HVSVNLPGSHGPQEEKSGQFTECKS 511
G C L SI +Q + D ++L S + ++L G HG + E + + +S
Sbjct: 470 GTHCDLGSI---TQSDNDVQNLEQCRKQSPTNTYAEADISLNGIHGSRPEWDWR-SGLQS 525
Query: 512 FQASMAAPT-MEDSPDFDDLQFKGLEDM--HHLPPISSTPHLPHNLNQSSYLSWQAGDVS 568
Q + P + D F++ + +G+ + H SS+ + + N + S+Q + S
Sbjct: 526 -QIDVKEPLEVNDFSSFNNNR-RGIAEAVSHSTSKFSSSISILDS-NHLASRSFQNRETS 582
Query: 569 NQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITNEASSFFNLDATVQHSSLFSEVGFGS 628
+D +G+ E+ R + NGF + +A S ++HS LF+ G +
Sbjct: 583 --CGMDSKTGS----SFEIGSDRLH--LPNGF-SEKAMS------NMEHS-LFANEGRSN 626
Query: 629 YLGKHDSMVAPLHSNVAS-DVGESSIISKILSLDADAWEDSLTSPYSFAKLLRESNRQHD 687
D ++ SN+ D + S+ S+ D S + LL++ N Q
Sbjct: 627 IQNTEDDII----SNILDFDPWDESLTSQHNFAKLLGQSDHRASTLESSNLLKQHNDQSR 682
Query: 688 SLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKDIF 747
S +R S++ + S E + + D+ + NG N +
Sbjct: 683 FSFARHEESNSQAYDNR-SYSIYGQLSRDQPLQEFGANRDMYQ-DKLGSQNGFASN---Y 737
Query: 748 TDKHQNAFXXXXXXXXXNFLGSHSFISSSVS-KAPTSVPP-GFAVPNRAPPPGFSPHGTM 805
+ ++ F + + +S+ AP +PP GF+ R GT
Sbjct: 738 SGGYEQ-FATSPGLSSYKSPVARTQVSAPPGFSAPNRLPPPGFSSHQRGDLSSDIASGT- 795
Query: 806 QKPFDSSASHLR--WTSAQAAGNSGPCGDIPFVDPAILEVGKGLQAIGLNNLGCDMRQTP 863
+ DS A+ LR + +GN GDI F+DPAIL VG+G G+ D+R
Sbjct: 796 -RLLDS-ANLLRNAYHVPPPSGNLNAAGDIEFIDPAILAVGRGRLHNGMETADFDLRSGF 853
Query: 864 SSQLNPFEHEARLQLLMQQSSSGYQNLRFQDYP--MNRFSPP-SDTYGISSKVLNQPQPN 920
SSQLN F+++ARLQLL Q+S + Q F D P +N FS SD YGISS+ +Q Q
Sbjct: 854 SSQLNSFDNDARLQLLAQRSLAAQQVNGFHD-PRNVNNFSSSFSDPYGISSRPTDQTQGT 912
Query: 921 NLSSFTQSPAQQYRNAHMSTGHLGSL-KGVKSINDLGVSDLMTNGGIGFNKFIPS-YEDL 978
LS FTQ P Q N +S GH + +S N+LG++ L+ N +GFN + S +E+
Sbjct: 913 GLSPFTQLPRQASANPLLSNGHWDNKWNEPQSGNNLGITQLLRNERMGFNDNVYSGFEEP 972
Query: 979 KCQMSNSSNLYNRGFAM 995
K + + YNR + +
Sbjct: 973 KFRRPGPGDPYNRTYGI 989
>TAIR|locus:2056563 [details] [associations]
symbol:AT2G28540 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AK228764 IPI:IPI00540319
RefSeq:NP_001031437.2 UniGene:At.38609 ProteinModelPortal:Q0WQD5
SMR:Q0WQD5 PRIDE:Q0WQD5 EnsemblPlants:AT2G28540.2 GeneID:817402
KEGG:ath:AT2G28540 TAIR:At2g28540 HOGENOM:HOG000085071
InParanoid:Q0WQD5 OMA:RIIANIM PhylomeDB:Q0WQD5
ProtClustDB:CLSN2681703 Genevestigator:Q0WQD5 Uniprot:Q0WQD5
Length = 960
Score = 1091 (389.1 bits), Expect = 1.3e-141, Sum P(2) = 1.3e-141
Identities = 219/417 (52%), Positives = 281/417 (67%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
M++K EKTCPLC EEMDLTDQ LKPC CGY+ICVWCW+HI+EMAEKD TEGRCPACRT Y
Sbjct: 1 MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
Query: 61 DKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN 120
DKEKIVGM +CER VA +R+ KSQKAKPKP+EGR LT VRVIQRNLVY++ LP +
Sbjct: 61 DKEKIVGMTVSCERLVAEFYIDRK-KSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFD 119
Query: 121 LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180
LADED+ QR+EYFGQYGKV+KV++SRTA G +Q NN+C VYITYS+E++AIRCI+SVH
Sbjct: 120 LADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVH 179
Query: 181 SYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRV 240
+ILDGR L+ACFGT KYCHAW+RNMPCS +CLYLH+ G+QEDSF+KDE +SA R V
Sbjct: 180 GFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMV 239
Query: 241 QQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGK 300
Q I G ++ RRSG+ LPPP D+Y+++ S+ + I K N + + S +
Sbjct: 240 QDITGWRDHYVRRSGSMLPPPVDDYVDNE--SSTRIIPKVVLNNVHSAAKNSPPNDSNSH 297
Query: 301 SNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQP 360
S +LP A W M S +P + P+R S S+ + T++ S + ++ +P
Sbjct: 298 SVTLPAGAMWGMHSS--VPNTPSSREPLRDKS--ATVSSAVAINPTQISSRSDELR--KP 351
Query: 361 MEAVATSKVHHKLDPLEL--GKEYIDALSSTNEEATLDS--IPATATSNQYITCRPT 413
A V L P L GK LSS+N+ +S + + + N P+
Sbjct: 352 ALEAAGGNV---LKPQSLLDGKTDFPELSSSNKTQISNSRNVVSASVDNSRAISEPS 405
Score = 315 (115.9 bits), Expect = 1.3e-141, Sum P(2) = 1.3e-141
Identities = 118/407 (28%), Positives = 189/407 (46%)
Query: 590 SRSENL--ISNGFITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASD 647
SR N+ ISNG+ S L+ ++ HS L + + ++ H + S+
Sbjct: 580 SRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQ--PIENCFVDSHES-PSE 636
Query: 648 VGESSIISKILSLDADAWEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSF 707
+ + II+ I+SLD D + LTSP+++A ES+ + SLK+ S K D QSRFSF
Sbjct: 637 I-DDRIIANIMSLDLDEY---LTSPHNYANPFGESDEEARSLKLASSSKVED-NQSRFSF 691
Query: 708 ARQEEFSNHASDVEHSLSNIRHSAD------QHPAPN-GLLKNKDIFTDKHQNAFXXXXX 760
ARQEE + A D ++ + + D + +PN G+ + + ++
Sbjct: 692 ARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTE 751
Query: 761 XXXXNFLGSHSFISSSVSKAPTSVPPGFAVP--NRAPPPGFSPHGTMQKPFDSSASHLRW 818
L S S+ +SV + P S PPGF+VP +R PPPGFS +G + D + + R+
Sbjct: 752 SST---LPS-SYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRF 807
Query: 819 TSAQAAGN----SGPCG---DIPFVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLNPFE 871
+ + A GN S P D+ ++DPAIL VG+G + N D R N +
Sbjct: 808 SDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFE-----NASLDFRSNFQGNTNMYG 862
Query: 872 HEARLQLLMQQSSSGYQNLRFQDYPMNRFSPP--SDTYGISSKVLNQPQPNNLSSFTQSP 929
A+LQ QQ + QN P++ +D+ G++ + ++Q Q NNL +
Sbjct: 863 SAAKLQ--QQQQQAVMQNPLSMQNPLSSHQNCRFTDSLGMAPRFIDQSQGNNLLT----- 915
Query: 930 AQQYRNAHMSTGHLGSLKGVKSINDLGVSDLMTNGG-IGFNKFIPSY 975
RN + GH L N++ + + N +G +IP Y
Sbjct: 916 ----RNMALPNGHWNGLMS----NEIQTRNRLQNERLVGSTNWIPGY 954
Score = 37 (18.1 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 618 SSLFSEVGFGSYLGKHDSM 636
+SL S +G G YL D +
Sbjct: 509 TSLMSPLGTGHYLEAEDDI 527
>UNIPROTKB|E2QXU8 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 GeneID:482708 KEGG:cfa:482708 RefSeq:XP_859650.1
Ensembl:ENSCAFT00000005176 OMA:KCRICPT NextBio:20857244
Uniprot:E2QXU8
Length = 710
Score = 536 (193.7 bits), Expect = 9.7e-58, Sum P(4) = 9.7e-58
Identities = 110/285 (38%), Positives = 170/285 (59%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---Q 242
Query: 249 NMHRRSGNALPPPADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 290
+++ + N L N N +T PI K S ++ I N +N
Sbjct: 243 ELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 1.2e-55, Sum P(3) = 1.2e-55
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
Score = 48 (22.0 bits), Expect = 3.2e-55, Sum P(3) = 3.2e-55
Identities = 39/150 (26%), Positives = 62/150 (41%)
Query: 276 PIAKNSSNIIENPNNGSCADIVAGKSNSLPTA-ASWVMRVSATLPTNKNLSGPVRPPSNQ 334
PIA NSS++ E+ N D G LP ++ +++ P+N N S P P+
Sbjct: 537 PIADNSSSV-ESLNMKEWQD---GLRALLPNININFGGLPNSSSPSNANHSAPTSNPATT 592
Query: 335 PKAS-NGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLELGKEYID----ALSST 389
S + P + T I + ++++ H L L+ E +D A S T
Sbjct: 593 DSLSWDSPGSWTDPAIITGIPATSGNSLDSLQDDNPPHWLKSLQALTE-MDGPSAAPSQT 651
Query: 390 NEEATLDS-IPATATS-NQYITCRPTSKSS 417
+ A + IP S N Y P++ SS
Sbjct: 652 HHSAPFSTQIPLHRASWNPYPP--PSNPSS 679
Score = 47 (21.6 bits), Expect = 9.7e-58, Sum P(4) = 9.7e-58
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKAS-------NGPQVPGTEVVSTTISIQTVQPMEAVATS 367
+ ++ NKN P++ P ++P S N Q+ ++ S + P+ +++S
Sbjct: 256 TGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSS 315
Query: 368 KVHHKLDPLELGKEYIDALSSTN 390
H P E +L S N
Sbjct: 316 N-HSARSPFEGAVTESQSLFSDN 337
Score = 43 (20.2 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 658 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 686
Score = 42 (19.8 bits), Expect = 9.7e-58, Sum P(4) = 9.7e-58
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 811 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 868
S+A+H TS A +S D P + DPAI+ G+ A N+L P L
Sbjct: 578 SNANHSAPTSNPATTDS-LSWDSPGSWTDPAIIT---GIPATSGNSLDSLQDDNPPHWLK 633
Query: 869 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 927
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 634 SLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 681
Query: 928 SPAQQYRNA 936
SP ++ A
Sbjct: 682 SPPPGFQTA 690
Score = 39 (18.8 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQ 703
Score = 38 (18.4 bits), Expect = 9.7e-58, Sum P(4) = 9.7e-58
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 669
D + P H+ + + S + SL+ W+D L
Sbjct: 522 DLNLPPQHNTGLGGIPIADNSSSVESLNMKEWQDGL 557
Score = 38 (18.4 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 785 PPGFAVPNRAPPPGF 799
PP +PPPGF
Sbjct: 673 PPSNPSSFHSPPPGF 687
>RGD|1310318 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
HOGENOM:HOG000065696 UniGene:Rn.203387 IPI:IPI00565508
EMBL:BC100152 RefSeq:NP_001032871.1 ProteinModelPortal:Q498M7
SMR:Q498M7 STRING:Q498M7 GeneID:312227 KEGG:rno:312227
UCSC:RGD:1310318 InParanoid:Q498M7 OrthoDB:EOG43BMNB NextBio:664680
Genevestigator:Q498M7 Uniprot:Q498M7
Length = 710
Score = 536 (193.7 bits), Expect = 1.2e-57, Sum P(4) = 1.2e-57
Identities = 110/285 (38%), Positives = 170/285 (59%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---Q 242
Query: 249 NMHRRSGNALPPPADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 290
+++ + N L N N +T PI K S ++ I N +N
Sbjct: 243 ELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
Score = 47 (21.6 bits), Expect = 1.2e-57, Sum P(4) = 1.2e-57
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKAS-------NGPQVPGTEVVSTTISIQTVQPMEAVATS 367
+ ++ NKN P++ P ++P S N Q+ ++ S + P+ +++S
Sbjct: 256 TGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSS 315
Query: 368 KVHHKLDPLELGKEYIDALSSTN 390
H P E +L S N
Sbjct: 316 N-HSARSPFEGAVTESQSLFSDN 337
Score = 43 (20.2 bits), Expect = 3.2e-57, Sum P(4) = 3.2e-57
Identities = 23/91 (25%), Positives = 33/91 (36%)
Query: 466 LESQFEKDRSLPVVPNSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAP----TM 521
L+S +K + N S+ +S + S P KS S S +P
Sbjct: 269 LQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVT 328
Query: 522 EDSPDFDDLQFKGLEDMHH-LPPISSTPHLP 551
E F D F+ + LPP S+P P
Sbjct: 329 ESQSLFSD-NFRHPNPIPSGLPPFPSSPQTP 358
Score = 43 (20.2 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 658 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 686
Score = 41 (19.5 bits), Expect = 1.2e-57, Sum P(4) = 1.2e-57
Identities = 34/129 (26%), Positives = 50/129 (38%)
Query: 811 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 868
S+A+H TS A +S D P + DPAI+ G+ A N L P L
Sbjct: 578 SNANHSAPTSNTATTDS-VSWDSPGSWTDPAIIT---GIPASSGNTLDSIQDDNPPHWLK 633
Query: 869 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 927
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 634 SLQALTEVDGPSAASPQPHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 681
Query: 928 SPAQQYRNA 936
SP ++ A
Sbjct: 682 SPPPGFQTA 690
Score = 39 (18.8 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQ 703
Score = 38 (18.4 bits), Expect = 1.2e-57, Sum P(4) = 1.2e-57
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 616 QHSSLFSEVGFGSYLGKHDSMVAPLHS 642
QH ++++ GF ++ M P +S
Sbjct: 478 QHRAVYNSFGFPGQAARYPWMAFPRNS 504
Score = 38 (18.4 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 785 PPGFAVPNRAPPPGF 799
PP +PPPGF
Sbjct: 673 PPSNPSSFHSPPPGF 687
Score = 37 (18.1 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 669
D + P H+ + + S + SL+ W+D L
Sbjct: 522 DLNLPPQHNTGLGGIPIADNNSSVESLNMKEWQDGL 557
>UNIPROTKB|F1MAD6 [details] [associations]
symbol:Cnot4 "Protein Cnot4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
IPI:IPI00565508 PRIDE:F1MAD6 Ensembl:ENSRNOT00000040969
ArrayExpress:F1MAD6 Uniprot:F1MAD6
Length = 713
Score = 526 (190.2 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 250 MHRRSGNALPPPAD 263
+HR S N PPP++
Sbjct: 666 LHRASWNPYPPPSN 679
Score = 43 (20.2 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 661 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 689
Score = 41 (19.5 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 34/129 (26%), Positives = 50/129 (38%)
Query: 811 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 868
S+A+H TS A +S D P + DPAI+ G+ A N L P L
Sbjct: 581 SNANHSAPTSNTATTDS-VSWDSPGSWTDPAIIT---GIPASSGNTLDSIQDDNPPHWLK 636
Query: 869 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 927
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 637 SLQALTEVDGPSAASPQPHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 684
Query: 928 SPAQQYRNA 936
SP ++ A
Sbjct: 685 SPPPGFQTA 693
Score = 39 (18.8 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQ 706
Score = 38 (18.4 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 616 QHSSLFSEVGFGSYLGKHDSMVAPLHS 642
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
Score = 38 (18.4 bits), Expect = 5.8e-53, Sum P(3) = 5.8e-53
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 785 PPGFAVPNRAPPPGF 799
PP +PPPGF
Sbjct: 676 PPSNPSSFHSPPPGF 690
Score = 37 (18.1 bits), Expect = 3.6e-53, Sum P(3) = 3.6e-53
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 669
D + P H+ + + S + SL+ W+D L
Sbjct: 525 DLNLPPQHNTGLGGIPIADNNSSVESLNMKEWQDGL 560
>UNIPROTKB|F8VQP3 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC083871 RefSeq:NP_001177779.1
UniGene:Hs.490224 GeneID:4850 KEGG:hsa:4850 CTD:4850 HGNC:HGNC:7880
GenomeRNAi:4850 NextBio:18678 EMBL:AC009331 IPI:IPI01011519
ProteinModelPortal:F8VQP3 SMR:F8VQP3 Ensembl:ENST00000541284
UCSC:uc011kpy.2 ArrayExpress:F8VQP3 Bgee:F8VQP3 Uniprot:F8VQP3
Length = 713
Score = 526 (190.2 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 250 MHRRSGNALPPPAD 263
+HR S N PPP++
Sbjct: 666 LHRASWNPYPPPSN 679
Score = 43 (20.2 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 661 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 689
Score = 41 (19.5 bits), Expect = 2.0e-54, Sum P(3) = 2.0e-54
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 811 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 868
S+A+H TS A +S D P + DPAI+ G+ A N+L P L
Sbjct: 581 SNANHSAPTSNTATTDS-LSWDSPGSWTDPAIIT---GIPASSGNSLDSLQDDNPPHWLK 636
Query: 869 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 927
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 637 SLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 684
Query: 928 SPAQQYRNA 936
SP ++ A
Sbjct: 685 SPPPGFQTA 693
Score = 39 (18.8 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQ 706
Score = 39 (18.8 bits), Expect = 2.2e-53, Sum P(3) = 2.2e-53
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 669
D + P H+ + + S + SL+ W+D L
Sbjct: 525 DLNLPPQHNTGLGGIPVADNSSSVESLNMKEWQDGL 560
>UNIPROTKB|F1MWA7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:DAAA02011636
EMBL:DAAA02011637 EMBL:DAAA02011638 EMBL:DAAA02011639
IPI:IPI00708734 UniGene:Bt.26972 Ensembl:ENSBTAT00000023825
Uniprot:F1MWA7
Length = 642
Score = 526 (190.2 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 250 MHRRSGNALPPPAD 263
+HR S N PPP++
Sbjct: 595 LHRASWNPYPPPSN 608
Score = 43 (20.2 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 590 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 618
Score = 39 (18.8 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQ 635
Score = 38 (18.4 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 785 PPGFAVPNRAPPPGF 799
PP +PPPGF
Sbjct: 605 PPSNPSSFHSPPPGF 619
Score = 37 (18.1 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 917 PQPNNLSSFTQSPAQQYRNA 936
P P+N SSF SP ++ A
Sbjct: 604 PPPSNPSSF-HSPPPGFQTA 622
>UNIPROTKB|E2QXU7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 EMBL:AAEX03010245
Ensembl:ENSCAFT00000005178 Uniprot:E2QXU7
Length = 642
Score = 526 (190.2 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 250 MHRRSGNALPPPAD 263
+HR S N PPP++
Sbjct: 595 LHRASWNPYPPPSN 608
Score = 43 (20.2 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345
S +P ++ P PPSN P + + P PG
Sbjct: 590 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 618
Score = 39 (18.8 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 783 SVPPGFAVPNRAPPPGFSPHGTMQ 806
S PPGF R PP +P +Q
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQ 635
Score = 38 (18.4 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 785 PPGFAVPNRAPPPGF 799
PP +PPPGF
Sbjct: 605 PPSNPSSFHSPPPGF 619
Score = 37 (18.1 bits), Expect = 5.2e-54, Sum P(3) = 5.2e-54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 917 PQPNNLSSFTQSPAQQYRNA 936
P P+N SSF SP ++ A
Sbjct: 604 PPPSNPSSF-HSPPPGFQTA 622
>SGD|S000000870 [details] [associations]
symbol:MOT2 "Ubiquitin-protein ligase subunit of the CCR4-NOT
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000209
"protein polyubiquitination" evidence=IMP;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP;IDA;IPI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00361
SGD:S000000870 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:BK006939
EMBL:U18813 RefSeq:NP_010991.3 GeneID:856799 KEGG:sce:YER068W
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0032968 GO:GO:0030015 eggNOG:COG5175
GeneTree:ENSGT00390000000068 GO:GO:0031087 EMBL:M96736 EMBL:L26309
PIR:A56015 RefSeq:NP_010994.3 ProteinModelPortal:P34909 SMR:P34909
DIP:DIP-2255N IntAct:P34909 MINT:MINT-617490 STRING:P34909
PaxDb:P34909 PeptideAtlas:P34909 EnsemblFungi:YER068W GeneID:856802
KEGG:sce:YER071C CYGD:YER068w HOGENOM:HOG000248860 OMA:DEEDYCP
OrthoDB:EOG42RHH7 NextBio:983041 Genevestigator:P34909
GermOnline:YER068W Uniprot:P34909
Length = 587
Score = 542 (195.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 141/438 (32%), Positives = 215/438 (49%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
+S+ E CPLC E MD+TD+ PC CGY+IC +C+N+I + E +G RCPACR Y
Sbjct: 25 LSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNG---RCPACRRKY 81
Query: 61 DKEKI--VGMAAN---CERA-VARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYI 114
D E + V ++ ERA +AR ER+ + ++ K R HL+ RVIQ+NLVY+
Sbjct: 82 DDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYV 141
Query: 115 IGLPINLADEDL---LQRKEYFGQYGKVLKVSISR------TATGDIQHSANNSCCVYIT 165
+G+ + E++ L+ ++YFGQYGK+ K+ ++R T + H + VYIT
Sbjct: 142 VGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYIT 201
Query: 166 YSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDS 225
+ +DDA RCI V +DGR ++A +GTTKYC +++R +PC P+C++LH+ G + DS
Sbjct: 202 FGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADS 261
Query: 226 FTKDEIVSAFTRSRVQQIIGAT----NNMHRRSGNALPPPADEYINSNITSTAKPIAKNS 281
F K E+ + + QQ G T + +H + ++ N T T P A +
Sbjct: 262 FNKREL---HNKQQAQQQSGGTAFTRSGIHNNISTSTAGSNTNLLSENFTGTPSPAAMRA 318
Query: 282 SNIIENPNNGSCADIVAGKSNSLPTAAS-WVMRVSATLPTNKNLSGPVRPPSNQPKASNG 340
++ N + +P ++ W + SAT T+ NLS N P ++
Sbjct: 319 QLHHDSHTNAGTPVLTPAP---VPAGSNPWGVTQSATPVTSINLSKN-SSSINLPTLNDS 374
Query: 341 PQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLELG-KEYIDALSSTNEEATLDSIP 399
T TI+ T ATS H L +EY D + +D +
Sbjct: 375 LGHHTTPTTENTIT-STTTTTNTNATSHSHGSKKKQSLAAEEYKDPYDALGN--AVDFLD 431
Query: 400 ATATSNQYITCRPTSKSS 417
A S RP S S
Sbjct: 432 ARLHSLSNYQKRPISIKS 449
Score = 45 (20.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 896 PMNRFSPPSDTYGISSKV-LNQPQPNNLSSFTQS 928
P+N +PP +G KV + Q Q + SS S
Sbjct: 538 PLNVSTPPPGIFGPQHKVPIQQQQMGDTSSRNSS 571
>UNIPROTKB|E2QXU6 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 RefSeq:XP_859452.1 Ensembl:ENSCAFT00000005180
GeneID:482708 KEGG:cfa:482708 Uniprot:E2QXU6
Length = 572
Score = 536 (193.7 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
Identities = 110/285 (38%), Positives = 170/285 (59%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---Q 242
Query: 249 NMHRRSGNALPPPADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 290
+++ + N L N N +T PI K S ++ I N +N
Sbjct: 243 ELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
Score = 47 (21.6 bits), Expect = 4.4e-53, Sum P(2) = 4.4e-53
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 315 SATLPTNKNLSGPVRPPSNQPKAS-------NGPQVPGTEVVSTTISIQTVQPMEAVATS 367
+ ++ NKN P++ P ++P S N Q+ ++ S + P+ +++S
Sbjct: 256 TGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSS 315
Query: 368 KVHHKLDPLELGKEYIDALSSTN 390
H P E +L S N
Sbjct: 316 N-HSARSPFEGAVTESQSLFSDN 337
>MGI|MGI:1859026 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
MGI:MGI:1859026 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043 EMBL:U71269
EMBL:AK009234 EMBL:AK028190 EMBL:AK032248 EMBL:BC058778
IPI:IPI00130086 IPI:IPI00410929 IPI:IPI00410930
RefSeq:NP_001157883.1 RefSeq:NP_001157885.1 RefSeq:NP_058573.3
UniGene:Mm.214525 UniGene:Mm.398182 PDB:2CPI PDBsum:2CPI
ProteinModelPortal:Q8BT14 SMR:Q8BT14 STRING:Q8BT14
PhosphoSite:Q8BT14 PaxDb:Q8BT14 PRIDE:Q8BT14
Ensembl:ENSMUST00000044163 Ensembl:ENSMUST00000114993 GeneID:53621
KEGG:mmu:53621 UCSC:uc009bid.2 UCSC:uc009big.2
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 ChiTaRS:CNOT4
EvolutionaryTrace:Q8BT14 NextBio:310353 Bgee:Q8BT14
CleanEx:MM_CNOT4 Genevestigator:Q8BT14
GermOnline:ENSMUSG00000038784 Uniprot:Q8BT14
Length = 575
Score = 526 (190.2 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 38 (18.4 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 616 QHSSLFSEVGFGSYLGKHDSMVAPLHS 642
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
>UNIPROTKB|D4ADF8 [details] [associations]
symbol:Cnot4 "RCG28297" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 RGD:1310318 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 IPI:IPI00373484 UniGene:Rn.203387
Ensembl:ENSRNOT00000014392 Uniprot:D4ADF8
Length = 575
Score = 526 (190.2 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 38 (18.4 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 616 QHSSLFSEVGFGSYLGKHDSMVAPLHS 642
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
>UNIPROTKB|O95628 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051865 "protein autoubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0000289 EMBL:U71267 EMBL:U71268
EMBL:AF180475 EMBL:AL389980 EMBL:AK074671 EMBL:AK300365
EMBL:AC083871 EMBL:AC074002 EMBL:BC035590 EMBL:AF091094
IPI:IPI00002436 IPI:IPI00410681 IPI:IPI00410682 IPI:IPI00410683
IPI:IPI00410684 IPI:IPI00410685 IPI:IPI00410686 IPI:IPI00925697
IPI:IPI01026266 RefSeq:NP_001008226.1 RefSeq:NP_001177776.1
RefSeq:NP_001177777.1 RefSeq:NP_001177779.1 RefSeq:NP_037448.2
UniGene:Hs.490224 PDB:1E4U PDB:1UR6 PDBsum:1E4U PDBsum:1UR6
ProteinModelPortal:O95628 SMR:O95628 IntAct:O95628 STRING:O95628
PhosphoSite:O95628 PaxDb:O95628 PRIDE:O95628
Ensembl:ENST00000315544 Ensembl:ENST00000356162
Ensembl:ENST00000361528 Ensembl:ENST00000414802
Ensembl:ENST00000423368 Ensembl:ENST00000428680
Ensembl:ENST00000451834 GeneID:4850 KEGG:hsa:4850 UCSC:uc003vss.3
UCSC:uc003vst.3 UCSC:uc003vsu.2 UCSC:uc003vsv.2 CTD:4850
GeneCards:GC07M135046 H-InvDB:HIX0007112 HGNC:HGNC:7880
HPA:HPA005737 MIM:604911 neXtProt:NX_O95628 PharmGKB:PA26675
eggNOG:COG5175 HOVERGEN:HBG051043 EvolutionaryTrace:O95628
GenomeRNAi:4850 NextBio:18678 ArrayExpress:O95628 Bgee:O95628
CleanEx:HS_CNOT4 Genevestigator:O95628 GermOnline:ENSG00000080802
Uniprot:O95628
Length = 575
Score = 526 (190.2 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 774 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
>POMBASE|SPAC16C9.04c [details] [associations]
symbol:mot2 "CCR4-Not complex subunit Mot2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0030015 "CCR4-NOT
core complex" evidence=NAS] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00361 PomBase:SPAC16C9.04c Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006368 GO:GO:0004842 GO:GO:0000289 GO:GO:0030015
eggNOG:COG5175 HOGENOM:HOG000248860 OrthoDB:EOG42RHH7 PIR:T37777
RefSeq:NP_593078.1 ProteinModelPortal:Q09818 SMR:Q09818
STRING:Q09818 PRIDE:Q09818 EnsemblFungi:SPAC16C9.04c.1
GeneID:2542325 KEGG:spo:SPAC16C9.04c NextBio:20803386
Uniprot:Q09818
Length = 489
Score = 545 (196.9 bits), Expect = 8.9e-52, P = 8.9e-52
Identities = 121/338 (35%), Positives = 190/338 (56%)
Query: 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62
D+ + CPLC EE+D++D+ KPC CGY +C +CW+HI K+ GRCPACR Y +
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI-----KEDLNGRCPACRRLYTE 66
Query: 63 EKIVGMAANCE--RAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN 120
E + E + +ER+++ ++ K R HL N+RV+Q+NL Y+ GL
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 121 LADED---LLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177
+A+E+ +L+ EYFGQYGK++K++I++ A + SAN VYITY R++DA R I
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIKIAINKKAAAN---SANGHVGVYITYQRKEDAARAIA 183
Query: 178 SVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSA-FT 236
++ + DGR LRA +GTTKYC +++RN C P C+YLH+ G + DS+TK+++ S T
Sbjct: 184 AIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHT 243
Query: 237 R--SRVQQII-GATNNMHRRSGNALPPPADEYINSNITSTAKPIAK-NSSNIIENPNNGS 292
R S ++ GAT++ P P+ + + T P+ + NSS +N + +
Sbjct: 244 RPLSTKPNVVNGATHS---------PSPSLPFKTPLLPVTKTPLEEANSSPAAQNQHI-T 293
Query: 293 CADIVAGKSNSLPTAASWVMRVSATLPTNKNLSGPVRP 330
D V + + P+ ++ S P + S V P
Sbjct: 294 TVDHVHPQVSMTPSLSTNNTATSVPAPYSSAASVNVVP 331
>UNIPROTKB|E1C4B3 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:AADN02005991
EMBL:AADN02005992 IPI:IPI00822866 Ensembl:ENSGALT00000038170
ArrayExpress:E1C4B3 Uniprot:E1C4B3
Length = 765
Score = 545 (196.9 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
Identities = 124/388 (31%), Positives = 198/388 (51%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + F +
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAIFAGKHQEYEQKLLQ 245
Query: 249 NMHRRSGNALPPPADEYI-NSN-ITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPT 306
+++ + N L N N +T+ +P + N ++ A+ + + P
Sbjct: 246 ELYKLNPNFLQLSTGTVDKNKNKVTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKTPP 305
Query: 307 AASWVMRVSATLPTNKNLS-GPVRPPSNQPKASNGP---QVPGTEVVSTTISIQTVQPME 362
P + GP+ PS+ NG Q+ ++ S + P+
Sbjct: 306 ILENGTDSEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNPVI 365
Query: 363 AVATSKVHHKLDPLELGKEYIDALSSTN 390
+++S H P E +L S N
Sbjct: 366 PISSSN-HSARSPFEGAVTESQSLFSDN 392
Score = 48 (22.0 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
Identities = 46/196 (23%), Positives = 75/196 (38%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSLTS--P---YSFAKLLRESNRQHDS 688
D + P HS + S S + SL+ W+D L + P SF L S+ + +
Sbjct: 577 DLNLQPQHSTGLGGIPISDNSSSVESLNMKEWQDGLRALLPNINISFGGLPNASSPSNAN 636
Query: 689 LKMP-SLFKESDCRQ--SRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKD 745
+P S +D S S+ + + +SL ++ D +P P+ L K+
Sbjct: 637 HSVPTSNTATTDSLNWDSSGSWMDPAIITGIPASTGNSLDTLQ---DDNP-PHWL-KSLQ 691
Query: 746 IFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTM 805
T+ N G+ + + S P S PP +PPPGF T
Sbjct: 692 ALTEV-DGPSAAPSQTHHSNPFGTQIPLHRA-SWNPYS-PPSNPTSFHSPPPGFQ---TA 745
Query: 806 QKPFDSSASHLRWTSA 821
+P + + L +SA
Sbjct: 746 FRPPSKTPTDLLQSSA 761
>ZFIN|ZDB-GENE-090313-262 [details] [associations]
symbol:si:dkey-230e6.2 "si:dkey-230e6.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00184 SMART:SM00360
ZFIN:ZDB-GENE-090313-262 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
EMBL:CABZ01070060 EMBL:CR387984 IPI:IPI00487935 RefSeq:XP_697509.2
Ensembl:ENSDART00000034714 GeneID:569055 KEGG:dre:569055
NextBio:20889484 Uniprot:E7F2Q8
Length = 772
Score = 530 (191.6 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 107/276 (38%), Positives = 166/276 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K +E R HL +VRV+QRNLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-IQRIKNEKKQKLNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRLADAEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ I+DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVIVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC ++++M C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---Q 242
Query: 249 NMHRRSGN-ALPPPADEYINSNITSTAKPIAKNSSN 283
++++ + L E S ST +P NS+N
Sbjct: 243 DLYKANPTFLLTSTCGEKSKSKSNSTQRP---NSTN 275
Score = 399 (145.5 bits), Expect = 2.7e-34, Sum P(4) = 2.7e-34
Identities = 82/218 (37%), Positives = 135/218 (61%)
Query: 73 ERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEY 132
+ + R+ +E++QK + K K +E R HL +VRV+QRNLV+++GL LAD ++L+R EY
Sbjct: 72 QEEIQRIKNEKKQKLNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRLADAEVLKRPEY 131
Query: 133 FGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 192
FG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ I+DGR L+A
Sbjct: 132 FGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVIVDGRTLKAS 189
Query: 193 FGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHR 252
GTTKYC ++++M C PDC+YLH+ G + SFTK+E+ + + Q+++ ++++
Sbjct: 190 LGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---QDLYK 246
Query: 253 RSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNN 290
+ L +TST +K+ SN + PN+
Sbjct: 247 ANPTFL-----------LTSTCGEKSKSKSNSTQRPNS 273
Score = 52 (23.4 bits), Expect = 5.6e-50, Sum P(3) = 5.6e-50
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 767 LGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 814
+G+ IS + S S PPG P+ P + T + PF+ +A+
Sbjct: 351 IGNGENISQTSSSDSPSPPPGLTKPSLVVPISVAEL-TARSPFEGAAA 397
Score = 47 (21.6 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 784 VPPGFAVPNR--APPPGF 799
+PP PN+ +PPPGF
Sbjct: 732 LPPPTLTPNQFHSPPPGF 749
Score = 46 (21.3 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 39/161 (24%), Positives = 58/161 (36%)
Query: 512 FQASMAAPTMEDSPDFD--DLQFKGLEDMHHLPPISSTPHLPHNLNQSSYLSWQAGDVSN 569
F +S +D FD D+ K L D+ +S H P + N SS+ Q G +
Sbjct: 461 FGSSAKQQQQDDDLGFDPFDVTRKALADLIE-KELSVQEHSPLSPNPSSH---QTGLPNG 516
Query: 570 QSNLDGHSGNVPLEHKEVLPSR-SENLISNGFITNEASSFFNLDATVQHSSLFSEVGFGS 628
Q H + L + LP + G T + N AT S F ++
Sbjct: 517 QQRFP-HLQHRGLYNSFSLPQHMAARHPWMGIPTRNNLTHLNHTATAAAHSHFLDL---- 571
Query: 629 YLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 669
SM A HS + S + S++ W+D L
Sbjct: 572 ------SMPAQHHSTGLGGIPISENNGSVESINVKEWQDGL 606
Score = 43 (20.2 bits), Expect = 3.1e-51, Sum P(4) = 3.1e-51
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 321 NKNLSGPVRPPSNQPKASNGPQ 342
N N P PS P SN PQ
Sbjct: 406 NSNFRHPNPIPSGLPPFSNSPQ 427
Score = 41 (19.5 bits), Expect = 1.0e-50, Sum P(4) = 1.0e-50
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 522 EDSPDFDDLQFKGLEDMHHLPPISSTPHLPHN--LNQSSYLS 561
+D+P + L +M P S+ P PH L+ +++LS
Sbjct: 681 DDNPPHWLKSLQALTEMDGPPSSSALPQPPHTGLLDAAAHLS 722
Score = 40 (19.1 bits), Expect = 5.6e-50, Sum P(3) = 5.6e-50
Identities = 24/92 (26%), Positives = 37/92 (40%)
Query: 868 NPFEHEA-RLQLLMQQSSSGYQNLRFQDYPMNRFSPP--SDTYGISSKVLNQPQPNNLSS 924
+PFE A Q L +S N R + P+ PP + G S + P+P +L +
Sbjct: 390 SPFEGAAAESQSLFSDNS----NFRHPN-PIPSGLPPFSNSPQGASDWPMT-PEPQSLFT 443
Query: 925 FTQSPAQQYRNAHMSTGHLGSLKGVKSINDLG 956
P + + G S K + +DLG
Sbjct: 444 SETIPVSSSTDWQAAFGFGSSAKQQQQDDDLG 475
Score = 37 (18.1 bits), Expect = 3.8e-49, Sum P(3) = 3.8e-49
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 648 VGESSIISKILSLDADA-----WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKES 698
+G IS+ S D+ + + SL P S A+L S + + + SLF ++
Sbjct: 351 IGNGENISQTSSSDSPSPPPGLTKPSLVVPISVAELTARSPFEGAAAESQSLFSDN 406
>UNIPROTKB|Q5ZJC9 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 EMBL:AADN02005991
EMBL:AADN02005992 EMBL:AJ720505 IPI:IPI00580995
RefSeq:NP_001012829.1 UniGene:Gga.6842 SMR:Q5ZJC9 STRING:Q5ZJC9
Ensembl:ENSGALT00000019099 GeneID:417936 KEGG:gga:417936
NextBio:20821166 Uniprot:Q5ZJC9
Length = 762
Score = 542 (195.9 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 122/386 (31%), Positives = 198/386 (51%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATN 248
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELY 245
Query: 249 NMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAA 308
++ D+ N +T+ +P + N ++ A+ + + P
Sbjct: 246 KLNPNFLQLSTGTVDKNKNK-VTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKTPPIL 304
Query: 309 SWVMRVSATLPTNKNLS-GPVRPPSNQPKASNGP---QVPGTEVVSTTISIQTVQPMEAV 364
P + GP+ PS+ NG Q+ ++ S + P+ +
Sbjct: 305 ENGTDSEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNPVIPI 364
Query: 365 ATSKVHHKLDPLELGKEYIDALSSTN 390
++S H P E +L S N
Sbjct: 365 SSSN-HSARSPFEGAVTESQSLFSDN 389
Score = 48 (22.0 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 46/196 (23%), Positives = 75/196 (38%)
Query: 634 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSLTS--P---YSFAKLLRESNRQHDS 688
D + P HS + S S + SL+ W+D L + P SF L S+ + +
Sbjct: 574 DLNLQPQHSTGLGGIPISDNSSSVESLNMKEWQDGLRALLPNINISFGGLPNASSPSNAN 633
Query: 689 LKMP-SLFKESDCRQ--SRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKD 745
+P S +D S S+ + + +SL ++ D +P P+ L K+
Sbjct: 634 HSVPTSNTATTDSLNWDSSGSWMDPAIITGIPASTGNSLDTLQ---DDNP-PHWL-KSLQ 688
Query: 746 IFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTM 805
T+ N G+ + + S P S PP +PPPGF T
Sbjct: 689 ALTEV-DGPSAAPSQTHHSNPFGTQIPLHRA-SWNPYS-PPSNPTSFHSPPPGFQ---TA 742
Query: 806 QKPFDSSASHLRWTSA 821
+P + + L +SA
Sbjct: 743 FRPPSKTPTDLLQSSA 758
>ZFIN|ZDB-GENE-040426-1164 [details] [associations]
symbol:zgc:63566 "zgc:63566" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 ZFIN:ZDB-GENE-040426-1164 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG051043 HSSP:O95628
EMBL:BC054913 IPI:IPI00507902 RefSeq:NP_957463.1 UniGene:Dr.79144
ProteinModelPortal:Q7SYD1 SMR:Q7SYD1 STRING:Q7SYD1 GeneID:394144
KEGG:dre:394144 InParanoid:Q7SYD1 NextBio:20815095
ArrayExpress:Q7SYD1 Uniprot:Q7SYD1
Length = 798
Score = 523 (189.2 bits), Expect = 2.7e-50, Sum P(4) = 2.7e-50
Identities = 97/236 (41%), Positives = 151/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K +E R HL++VRV+QRNLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKITENRKHLSSVRVVQRNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC ++++M C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 51 (23.0 bits), Expect = 2.7e-50, Sum P(4) = 2.7e-50
Identities = 25/104 (24%), Positives = 43/104 (41%)
Query: 320 TNKNLSGPVRPPSNQPKASNGP-QVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLEL 378
TN N + K+ +G Q + S+QT M + HHK PL+
Sbjct: 247 TNPNFLQSSTGTGEKTKSKSGTSQSSNSNSKEAWPSLQTTGKMPNGLSE--HHKTPPLDG 304
Query: 379 GKEYI----DALSSTNEEATLDSIPATATSNQYITCRPTSKSSE 418
G + D L S ++ +P+ ++ + ++ PTSK S+
Sbjct: 305 GSDSENMTPDGLDSDLGLGSITGLPSFTSNCEPVS--PTSKPSD 346
Score = 50 (22.7 bits), Expect = 2.7e-50, Sum P(4) = 2.7e-50
Identities = 22/91 (24%), Positives = 35/91 (38%)
Query: 474 RSLPVVPNSSISKHVSVNLPGSHGP-QEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQF 532
+S PV+P+ + + N P P Q S F S S + ++ F
Sbjct: 502 KSAPVMPHGPLLGPLH-NAPSMKSPLQPPTSSHFAPNSSLP-SRGFSHLPHRTVYNSFSF 559
Query: 533 KG-LEDMHH----LPPISSTPHLPHNLNQSS 558
G + H +P ++ PHL H+ SS
Sbjct: 560 PGQAQSSRHSWMGMPMRNNLPHLNHSTGPSS 590
Score = 42 (19.8 bits), Expect = 2.7e-50, Sum P(4) = 2.7e-50
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 778 SKAPTSVPPGFAVPNRAPPPGF 799
S PT+ A +PPPGF
Sbjct: 754 SPYPTTATANPATQFHSPPPGF 775
Score = 41 (19.5 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 14/56 (25%), Positives = 18/56 (32%)
Query: 884 SSGYQNLRFQDYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYRNAHMS 939
S G+ +L + N FS P + P NNL S H S
Sbjct: 542 SRGFSHLPHRTV-YNSFSFPGQAQSSRHSWMGMPMRNNLPHLNHSTGPSSAAQHSS 596
Score = 38 (18.4 bits), Expect = 7.1e-50, Sum P(4) = 7.1e-50
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 781 PTSVPPGFAVPNRAPPPGFSPHGT 804
P S P G P+RA G+SP+ T
Sbjct: 738 PHSGPFGAQFPHRA---GWSPYPT 758
>UNIPROTKB|I3LC53 [details] [associations]
symbol:LOC100622832 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FP015781
Ensembl:ENSSSCT00000029334 OMA:GKFGKIQ Uniprot:I3LC53
Length = 304
Score = 526 (190.2 bits), Expect = 1.0e-49, P = 1.0e-49
Identities = 98/236 (41%), Positives = 150/236 (63%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>FB|FBgn0051716 [details] [associations]
symbol:Cnot4 "Cnot 4 homologue" species:7227 "Drosophila
melanogaster" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0046425 "regulation of JAK-STAT cascade"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
EMBL:AE014134 GO:GO:0051297 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000000068
GO:GO:0046425 HSSP:O95628 UniGene:Dm.18584 GeneID:34416
KEGG:dme:Dmel_CG31716 FlyBase:FBgn0051716 GenomeRNAi:34416
NextBio:788389 EMBL:BT003543 RefSeq:NP_723578.1 RefSeq:NP_723579.1
RefSeq:NP_723580.1 RefSeq:NP_723581.1 RefSeq:NP_723582.1 SMR:Q9VKX1
MINT:MINT-965323 STRING:Q9VKX1 EnsemblMetazoa:FBtr0080009
EnsemblMetazoa:FBtr0080010 EnsemblMetazoa:FBtr0080011
EnsemblMetazoa:FBtr0080012 EnsemblMetazoa:FBtr0080013
UCSC:CG31716-RA InParanoid:Q9VKX1 Uniprot:Q9VKX1
Length = 1051
Score = 515 (186.3 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 140/421 (33%), Positives = 211/421 (50%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I K CPACR Y +
Sbjct: 13 CPLCMEPLEVDDLTFFPCTCGYQICRFCWHRIRTDENK-----LCPACRKEYPENPADFK 67
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E +A S++RQ+ Q+ K K +E R HL NVRV+Q+NLV+++GLP LAD D+L+
Sbjct: 68 PLSQEEMIA-FKSQKRQRDQQRKQKITENRKHLANVRVVQKNLVFVVGLPPRLADADILK 126
Query: 129 RKEYFGQYGKVLKVSISRTAT-GDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187
+ EYFG+YGK+ KV I+ + T +Q S Y+TY DA+R IQSV++ ++DGR
Sbjct: 127 KHEYFGKYGKIHKVVINPSTTYAGVQ---GPSASAYVTYVNNSDALRAIQSVNNIMIDGR 183
Query: 188 PLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGAT 247
++ GTTKYC +++N C DC+YLH+ G E SFTK+E+ + +
Sbjct: 184 LIKTSLGTTKYCSHFMKNQQCPKGDCMYLHELGDPEASFTKEEMHQG-------KHLEYE 236
Query: 248 NNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPT- 306
+H +L P A +N I S++ A +SS+ + NGS A A + + P+
Sbjct: 237 KRLHDTLIASLGPNATGIVNVAIPSSSS--ASSSSS--GSGTNGSSASGNAQQKEAWPSL 292
Query: 307 AASWV----MRVSATLPTNKN----LSGPVRPPSNQPKASNGPQVPGTE------VVSTT 352
+ S + +AT + K+ L R N+ K NG V T
Sbjct: 293 SVSPINGKEAAATATSSSGKSKREKLRNEKRHEKNKAKNKNGSNTNANASNKENYVPETR 352
Query: 353 ISIQTVQPMEAVATSKVHHKLDP---------LELGKEYIDALSSTNEEATLDSIPATAT 403
S T EA A + K +P + GK+ A S+ ++ + ++ PA A
Sbjct: 353 SSTSTETFAEATADAPASTKAEPPQASSNRTRADRGKDRTTA-SAKEQKKSKEAAPAPAA 411
Query: 404 S 404
S
Sbjct: 412 S 412
Score = 60 (26.2 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 46/157 (29%), Positives = 64/157 (40%)
Query: 793 RAPPPGFSPHGTMQKPFDSSASHLRWTSAQAAGNSGPCGDIPFVDPAILEVGK-GLQA-- 849
R PPPGF+ T+ AS L+ TS IPF++ + VG G Q
Sbjct: 872 RMPPPGFNHVNTLGL---GGASRLQLTSKI----------IPFMNMPVNGVGNSGAQGQH 918
Query: 850 ---IGLN-NLGCDMRQTPS-----SQL-NPFEHEARLQLLMQQSSSGYQNLRFQDY---P 896
+G+N N M Q P SQL +P H ++ +S L F+ Y P
Sbjct: 919 QMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMAHN-KVYNNSDWTSMDPAILSFRQYSSFP 977
Query: 897 MNRFSP-PSDTYGISSKVLNQPQPNNLSSFTQSPAQQ 932
N+ P P + + L Q Q N+ S + AQQ
Sbjct: 978 QNQIPPHPQQQQDLFLQHLAQQQ-NSQSGGFNNQAQQ 1013
Score = 44 (20.5 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 877 QLLMQQSSSGYQNLRFQ 893
QLL QQ +QNLR Q
Sbjct: 637 QLLQQQHLQQHQNLRHQ 653
Score = 40 (19.1 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 820 SAQAAGNSGPCGDIPFVDP----AILEVGKGL-QAIGLNNLGCDMRQ---TPSSQLNPFE 871
+A A GN G +P VDP ++ + G + A+ N+ D +PS Q P
Sbjct: 528 AAVAPGNGEVEGCLPVVDPVEPPSLADNGSRVTDALSKLNIFDDTPSFFTSPSFQQAPIL 587
Query: 872 HEARLQLLMQQS 883
+L L M+QS
Sbjct: 588 KN-KLDLEMRQS 598
>CGD|CAL0000791 [details] [associations]
symbol:NOT4 species:5476 "Candida albicans" [GO:0009405
"pathogenesis" evidence=IMP] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0036178 "filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 CGD:CAL0000791 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0044011 EMBL:AACQ01000131 GO:GO:0000152
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_713212.1
ProteinModelPortal:Q59UI5 STRING:Q59UI5 GeneID:3645115
KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 472 (171.2 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 113/350 (32%), Positives = 180/350 (51%)
Query: 16 MDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCER- 74
MD++D+ KPC CGY+IC +C+N+I + E +G RCP CR YD E + + E
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNG---RCPGCRRLYDDESVEYKTVSAEEY 57
Query: 75 AVARMTSERRQKSQKAKPKPSE-----GRMHLTNVRVIQRNLVYIIGL--PINLAD-EDL 126
+ ++ E+R + +K K K + + HL +RV+Q+NLVY+ GL P N D +
Sbjct: 58 KLMQLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSV 117
Query: 127 LQRKEYFGQYGKVLKVSISR---TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183
L+ +YFGQYGK+ K+ I + T H N VY+T++R++DA+RCI + +
Sbjct: 118 LRSDKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSL 177
Query: 184 LDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQI 243
DGR LRA GTTKYC +++R PC P+C++LH+ G + DS+T+ ++ T+ ++
Sbjct: 178 CDGRVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLS---TQQGIK-- 232
Query: 244 IGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNS 303
+G T H S + SN + + + + + + A +G SNS
Sbjct: 233 MGMTARSHTTS---FGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSG-SNS 288
Query: 304 LPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTI 353
+ + SA PT L VR Q K P+ T+ +T +
Sbjct: 289 PSVNNNIPLANSAAFPT---LGEIVRDQKQQQKKETKPRSKTTKSNNTLV 335
Score = 41 (19.5 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 18/81 (22%), Positives = 29/81 (35%)
Query: 670 TSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRH 729
T A+L + N + L Q + +Q+ + H L NI
Sbjct: 445 TPALQVAQLQQNKNDEQQKQAQQQLLLLQLQHQQQLQQQQQQRQLQQQQNQPHQL-NILK 503
Query: 730 SADQ----HPAPNGLLKNKDI 746
++D+ P P GL KD+
Sbjct: 504 TSDRVNTSTPPPPGLFAGKDV 524
>UNIPROTKB|Q59UI5 [details] [associations]
symbol:NOT4 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Mot2p" species:237561 "Candida albicans SC5314"
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044011 "single-species
biofilm formation on inanimate substrate" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0000791 GO:GO:0071216 GO:GO:0036244 GO:GO:0036180
GO:GO:0036178 GO:GO:0009405 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0044011
EMBL:AACQ01000131 GO:GO:0000152 GO:GO:0030015 eggNOG:COG5175
RefSeq:XP_713212.1 ProteinModelPortal:Q59UI5 STRING:Q59UI5
GeneID:3645115 KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 472 (171.2 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 113/350 (32%), Positives = 180/350 (51%)
Query: 16 MDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCER- 74
MD++D+ KPC CGY+IC +C+N+I + E +G RCP CR YD E + + E
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNG---RCPGCRRLYDDESVEYKTVSAEEY 57
Query: 75 AVARMTSERRQKSQKAKPKPSE-----GRMHLTNVRVIQRNLVYIIGL--PINLAD-EDL 126
+ ++ E+R + +K K K + + HL +RV+Q+NLVY+ GL P N D +
Sbjct: 58 KLMQLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSV 117
Query: 127 LQRKEYFGQYGKVLKVSISR---TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183
L+ +YFGQYGK+ K+ I + T H N VY+T++R++DA+RCI + +
Sbjct: 118 LRSDKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSL 177
Query: 184 LDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQI 243
DGR LRA GTTKYC +++R PC P+C++LH+ G + DS+T+ ++ T+ ++
Sbjct: 178 CDGRVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLS---TQQGIK-- 232
Query: 244 IGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNS 303
+G T H S + SN + + + + + + A +G SNS
Sbjct: 233 MGMTARSHTTS---FGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSG-SNS 288
Query: 304 LPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTI 353
+ + SA PT L VR Q K P+ T+ +T +
Sbjct: 289 PSVNNNIPLANSAAFPT---LGEIVRDQKQQQKKETKPRSKTTKSNNTLV 335
Score = 41 (19.5 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 18/81 (22%), Positives = 29/81 (35%)
Query: 670 TSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRH 729
T A+L + N + L Q + +Q+ + H L NI
Sbjct: 445 TPALQVAQLQQNKNDEQQKQAQQQLLLLQLQHQQQLQQQQQQRQLQQQQNQPHQL-NILK 503
Query: 730 SADQ----HPAPNGLLKNKDI 746
++D+ P P GL KD+
Sbjct: 504 TSDRVNTSTPPPPGLFAGKDV 524
>WB|WBGene00003827 [details] [associations]
symbol:ntl-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00361
GO:GO:0009792 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0040017 GO:GO:0000003 GO:GO:0003676
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FO080908 HSSP:O95628
GeneID:177580 KEGG:cel:CELE_C49H3.5 UCSC:C49H3.5a CTD:177580
HOGENOM:HOG000021187 NextBio:897454 RefSeq:NP_741453.1
ProteinModelPortal:Q9GYQ9 SMR:Q9GYQ9 DIP:DIP-27225N IntAct:Q9GYQ9
MINT:MINT-1111747 STRING:Q9GYQ9 PRIDE:Q9GYQ9
EnsemblMetazoa:C49H3.5a.1 EnsemblMetazoa:C49H3.5a.2
WormBase:C49H3.5a InParanoid:Q9GYQ9 OMA:NSMLDGR ArrayExpress:Q9GYQ9
Uniprot:Q9GYQ9
Length = 796
Score = 492 (178.3 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 106/292 (36%), Positives = 161/292 (55%)
Query: 2 SDKA-EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
SD++ +K CPLC E ++L D PC C Y+IC +CW+ I + G CPACR Y
Sbjct: 5 SDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRI-----RTDENGLCPACRQPY 59
Query: 61 DKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN 120
++ V V + E+R K Q K K S+ R +L N RV+Q+NLVY++GL
Sbjct: 60 PEDP-VNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPR 118
Query: 121 LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180
+AD ++L++ EYFG+YGK+ K+ S T + H S Y+TY R DDA+R IQ VH
Sbjct: 119 VADPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPP-SHTAYVTYKRVDDALRAIQGVH 177
Query: 181 SYILDGRPLRACFGTTKYCHAWIRNMPCSVP--DCLYLHDFGSQEDSFTKDEIVSAFTRS 238
+ +LDGR ++A GTTKYC +++ + C P +C+YLH+ E SFTKD++
Sbjct: 178 NSMLDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTE 237
Query: 239 RVQQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNN 290
+++I S N+ PPP + S + P + + +E+ ++
Sbjct: 238 YEKRLI--------ESMNSRPPPPQSTLASQLDKILAPTSNSPRRYLEDDSD 281
Score = 48 (22.0 bits), Expect = 4.2e-44, Sum P(3) = 4.2e-44
Identities = 26/136 (19%), Positives = 51/136 (37%)
Query: 681 ESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGL 740
+ NRQ D + + ++ Q + F FS+ ++ + + Q +
Sbjct: 579 DMNRQQDYMYSRLMSQQQQQSQQQRQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSS 638
Query: 741 LKNKDIFT---DKHQNAFXXXXXXXXXNFLGSHSFISSSV--SKAPTSV--PPGFAVP-- 791
+D+F +HQ + G +S++ + + + P + PPG P
Sbjct: 639 SLLQDLFNRQQQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPST 698
Query: 792 NRAPPPGFSP-HGTMQ 806
NR+ +P H T Q
Sbjct: 699 NRSSTTQQAPPHMTQQ 714
Score = 44 (20.5 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 916 QPQPNNL-SSFTQSPAQQYRNAHMSTGH 942
Q P +L SS Q P QQ ++ H S H
Sbjct: 536 QQHPQHLQSSHQQHPLQQNQDQHHSFLH 563
Score = 44 (20.5 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 765 NFLGSHSFISSSVS-KAPTSVPPGFAVPNRAPPPGFSP 801
+ G+H+ SS+ S + S PPG A N GF P
Sbjct: 453 SLFGTHT--SSTPSFRREASPPPGLARFNSDDDLGFDP 488
Score = 39 (18.8 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 303 SLPTAASWVMRVSATLPTNKNLSG 326
S P+A S ++ S+ PT K SG
Sbjct: 425 SSPSAQSTIVEPSSLFPTFKMDSG 448
Score = 39 (18.8 bits), Expect = 2.7e-43, Sum P(4) = 2.7e-43
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 789 AVPNRAPPPGFS 800
AVP PPPGFS
Sbjct: 783 AVP---PPPGFS 791
Score = 38 (18.4 bits), Expect = 6.5e-44, Sum P(4) = 6.5e-44
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 861 QTPSSQLNPFEHEARLQLLMQQSSSGYQNLRFQDYPMNR 899
Q Q + F H+ Q QQ R QDY +R
Sbjct: 552 QQNQDQHHSFLHQLHAQQQHQQQQFAADMNRQQDYMYSR 590
Score = 37 (18.1 bits), Expect = 8.3e-44, Sum P(4) = 8.3e-44
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 695 FKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHP 735
F ES S QE+ H S H+L ++ Q P
Sbjct: 489 FTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLP 529
>DICTYBASE|DDB_G0275005 [details] [associations]
symbol:DDB_G0275005 "putative CCR4-NOT complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030015 "CCR4-NOT
core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50102
SMART:SM00184 SMART:SM00360 dictyBase:DDB_G0275005 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000012 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_644313.1
ProteinModelPortal:Q554L0 SMR:Q554L0 EnsemblProtists:DDB0237630
GeneID:8619741 KEGG:ddi:DDB_G0275005 OMA:QEHPHLP Uniprot:Q554L0
Length = 1486
Score = 445 (161.7 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 115/360 (31%), Positives = 189/360 (52%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
MSD+ + +CPLC +E+ D++ +PC CGY+ICV+C+ I E + R +
Sbjct: 1 MSDE-DNSCPLCLDELSKADRKFRPCPCGYQICVFCFERIRESEQNRCPACRKTYDSVNF 59
Query: 61 D---KEKIVGMAANCERAVARMTSERRQKSQKAKPKPS---------EGRMHLTNVRVIQ 108
++ + E + + R++++K S G L VRVIQ
Sbjct: 60 SVISSDEEEEEDEDDEEDDSEDDGQDRRRNRKYNGVNSLNNSLDYTKRGDKPLNTVRVIQ 119
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCC-VYITYS 167
RNLVY+ L I++A ++L++ EYF QYGK+LK+ I+R ++ +S + +C YITY+
Sbjct: 120 RNLVYVTNLAISIAKPEILKKNEYFAQYGKILKIVINRNNIYNL-NSPHGACVSAYITYA 178
Query: 168 REDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFT 227
R++DA+ IQ++ ++GR LRA FGTTKYC ++R +PC+ PDC+YLH+ G ++DS+T
Sbjct: 179 RKEDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMYLHELGQEDDSYT 238
Query: 228 KDEIVS-AFTRSRVQQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIE 286
K++I S A + + Q S L P+ ++S+ TS+ ++ +SS
Sbjct: 239 KEDITSTAVYKPKPTQ---QPTPWKESSEKVLASPS---LSSS-TSSTNNMSNSSSFKTW 291
Query: 287 NPNNGSCADIVAGKSNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGT 346
N +N S + P+A A LP+ + PP + K+ P +P T
Sbjct: 292 NISNVSPQPVTVLNPLEWPSATDASSMAPAILPSGSS------PPLS--KSQERPFLPAT 343
Score = 64 (27.6 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 501 EKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLEDMHHL----PPISSTPHLPHNLNQ 556
+ +G + + AS+ P M S + Q L +HH P ++S + ++LN
Sbjct: 789 DTTGSLSSSTNNTASLITPDMFFSIQSEQYQLPTLSSLHHPNGVEPTLNSQSIIENSLNL 848
Query: 557 SSY----LSWQAGDVSNQSNLDGHSG-NVPLEHKEVLPSRSENLISNGF---ITNEASS- 607
+ L+ +++NQ+N +SG N + + + + + N +N F I NE SS
Sbjct: 849 NLVGNRSLNNSQNNINNQTNSLNNSGSNNLIFNNDYNNNNNNNNNNNSFSNNIENEDSSQ 908
Query: 608 -FF 609
FF
Sbjct: 909 QFF 911
Score = 62 (26.9 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 780 APTSVPPGFAVPNRAPPPGF 799
APT PPGF N PPPGF
Sbjct: 1084 APTPPPPGFQ--NIIPPPGF 1101
Score = 60 (26.2 bits), Expect = 8.3e-41, Sum P(5) = 8.3e-41
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 537 DMHHLPPISSTPHLPHNLNQSSYLSWQAGDVSN--QSNLDGHSGNVPLEHKEVLPSRSEN 594
+M+ PP+ S+ SS ++Q + N +SN DG+S + + L + + N
Sbjct: 985 NMNDFPPLESSG--------SSIKTFQDPAIVNSYKSNGDGNSVWKVIPNNNPLNNSNSN 1036
Query: 595 LISNGFITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAP 639
+ N N ++ NL +V SS+ GFG + MV P
Sbjct: 1037 IYGNNNNNNNSNGNLNLRKSVT-SSVSPPPGFGGF-DSQKPMVNP 1079
Score = 54 (24.1 bits), Expect = 4.6e-38, Sum P(4) = 4.6e-38
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 478 VVPNSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLED 537
V+PN++ + + N+ G++ +G KS +S++ P P F F +
Sbjct: 1023 VIPNNNPLNNSNSNIYGNNNNNNNSNGNLNLRKSVTSSVSPP-----PGFGG--FDSQKP 1075
Query: 538 MHHLPP-ISSTPHLPHNLNQSSYLSWQAGDVSNQSNLDGHSGN 579
M + PP + TP P N +Q+ + + +N + + N
Sbjct: 1076 MVNPPPGFAPTPPPPGFQNIIPPPGFQSNNNTTTTNNNNSTNN 1118
Score = 53 (23.7 bits), Expect = 2.7e-40, Sum P(5) = 2.7e-40
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 740 LLKNKDIFTDKHQNAFXXXXXXXXXNF-LGSHSFISSSVSKAPTSVPPGFA-----VPNR 793
++ N + + + N + N L ++SSVS P PPGF P
Sbjct: 1023 VIPNNNPLNNSNSNIYGNNNNNNNSNGNLNLRKSVTSSVS--P---PPGFGGFDSQKPMV 1077
Query: 794 APPPGFSP 801
PPPGF+P
Sbjct: 1078 NPPPGFAP 1085
Score = 48 (22.0 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 23/113 (20%), Positives = 36/113 (31%)
Query: 875 RLQLLMQQSSSGYQNLRFQDYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYR 934
+LQ+ +QQ Q FQ P + + + Q Q Q QQ +
Sbjct: 1259 QLQMRLQQQQQQQQQ-HFQSQPQQQQQQQQQILHLQQLLQQQQQQQQQQQQQQQQQQQQQ 1317
Query: 935 NAHMSTGHLGSLKGVKSINDLGVSDLMTNGGI-GFNKFIPSYEDLKCQMSNSS 986
S +L + N + S I N F + + Q N+S
Sbjct: 1318 QQQPSKDNLF----LPQFNGMSNSPQQQQNNIFNMNSFYQQQQQQQAQKQNNS 1366
Score = 44 (20.5 bits), Expect = 3.3e-41, Sum P(5) = 3.3e-41
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 810 DSSASHLRWTSAQAAGNSG-PCGDIPFVDPA-ILEVGKGLQAIGLNNL-GCDMRQTPSSQ 866
++S+S + + N+G G PFVDP+ + + + + N+ D ++ Q
Sbjct: 1129 NNSSSTINGNQLLSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAMENIKNKDKKKNKEEQ 1188
Query: 867 LNP---FEHEARLQLLMQQ 882
+H+ Q ++QQ
Sbjct: 1189 EQEQLQLQHQLHQQQMLQQ 1207
>TAIR|locus:2027262 [details] [associations]
symbol:AT1G74870 species:3702 "Arabidopsis thaliana"
[GO:0005794 "Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042991 "transcription factor import
into nucleus" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC008263 EMBL:AC013258
eggNOG:COG5175 HSSP:O95628 EMBL:BT010439 EMBL:AK175181
IPI:IPI00532990 PIR:C96778 RefSeq:NP_177625.1 UniGene:At.34831
ProteinModelPortal:Q9S7I7 SMR:Q9S7I7 PRIDE:Q9S7I7
EnsemblPlants:AT1G74870.1 GeneID:843826 KEGG:ath:AT1G74870
TAIR:At1g74870 HOGENOM:HOG000153442 OMA:SENEARC PhylomeDB:Q9S7I7
ProtClustDB:CLSN2914586 ArrayExpress:Q9S7I7 Genevestigator:Q9S7I7
Uniprot:Q9S7I7
Length = 289
Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62
++ CP+C+E MD TD + +PC CG+ IC++C N I E E RCPACR Y K
Sbjct: 209 DEECPICSELMDATDLEFEPCTCGFRICLFCHNKISE------NEARCPACRKDYKK 259
>TAIR|locus:2097930 [details] [associations]
symbol:AT3G48070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002686
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00657445
RefSeq:NP_001030828.1 UniGene:At.23454 ProteinModelPortal:F4JCT1
SMR:F4JCT1 PRIDE:F4JCT1 EnsemblPlants:AT3G48070.2 GeneID:823962
KEGG:ath:AT3G48070 OMA:APDDIFR PhylomeDB:F4JCT1 Uniprot:F4JCT1
Length = 350
Score = 148 (57.2 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I DG +GRCP CR Y++ I
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC-----DG-DGRCPGCRKPYERNTI 294
>TAIR|locus:2170708 [details] [associations]
symbol:AT5G62910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002688
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AB009053
HSSP:O95628 EMBL:BT024718 IPI:IPI00543424 RefSeq:NP_201096.1
UniGene:At.29027 ProteinModelPortal:Q9FM05 SMR:Q9FM05 PRIDE:Q9FM05
EnsemblPlants:AT5G62910.1 GeneID:836411 KEGG:ath:AT5G62910
TAIR:At5g62910 HOGENOM:HOG000083855 InParanoid:Q9FM05 OMA:HHESFME
PhylomeDB:Q9FM05 ProtClustDB:CLSN2684023 Genevestigator:Q9FM05
Uniprot:Q9FM05
Length = 327
Score = 147 (56.8 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I DG +GRCP CR Y++ +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC-----DG-DGRCPGCRKPYERNMV 302
>UNIPROTKB|C9JWN8 [details] [associations]
symbol:TRIM5 "Tripartite motif-containing protein 5"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AC015691 EMBL:AC025016
EMBL:AC131574 HOGENOM:HOG000234134 HGNC:HGNC:16276 ChiTaRS:TRIM5
EMBL:AC109341 IPI:IPI00749246 ProteinModelPortal:C9JWN8 SMR:C9JWN8
STRING:C9JWN8 Ensembl:ENST00000419850 ArrayExpress:C9JWN8
Bgee:C9JWN8 Uniprot:C9JWN8
Length = 72
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/64 (40%), Positives = 31/64 (48%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C E L Q L +CG+ C C NH M +K E CP CR +Y
Sbjct: 10 KEEVTCPICLE---LLTQPLS-LDCGHSFCQACLTANHKKSMLDKG--ESSCPVCRISYQ 63
Query: 62 KEKI 65
E I
Sbjct: 64 PENI 67
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 129 (50.5 bits), Expect = 0.00046, P = 0.00046
Identities = 113/602 (18%), Positives = 234/602 (38%)
Query: 197 KYCHAWIRNMPCSVPDCLYLHDF-GSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 255
KY +W+ SV + DF Q+DS + ++ + +T G T++ +
Sbjct: 6 KYKVSWV--FVLSVAGSSLIRDFLFGQDDSLSIEKRTNEYTTPEY----GGTSHCNGGDK 59
Query: 256 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 315
N P D K++ + P S + + S+++ +++S V+ S
Sbjct: 60 NCYPQCFDHRGQPKKDKCC--FDKHNKVLYPYPCTSSSSS--SSSSSTVSSSSSEVISSS 115
Query: 316 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDP 375
+ ++ ++ S+ +S+ + +E++S++ + + ++SKV +
Sbjct: 116 SEEASSSEITSSSEISSSSEVSSSSEVLSSSEIISSSSEVVS-------SSSKVSSSSEA 168
Query: 376 LELGKEYIDALS---STNEEATLDSIPATATSNQYITCRPTSKSSEKDIAXXXXXXXXXX 432
E I + S S++ + T S +++S + S SSE +
Sbjct: 169 TSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEV 228
Query: 433 XXXXXXXXXXVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVPNSS-ISKHVSVN 491
SS IV + S + + S E S VV +SS +S V+
Sbjct: 229 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEVS 287
Query: 492 LPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDF--DDLQFKGLEDMHHLPPI-SSTP 548
E S S Q ++ + S + + ++ + SS+
Sbjct: 288 SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSS 347
Query: 549 HLPHN--LNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITN--E 604
+ + ++ SS +S + V++ S + S V EV+ S SE S+ +++ E
Sbjct: 348 EVSSSSEVSSSSEVS-SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 406
Query: 605 ASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADA 664
SS + ++ + SS SEV S + +++ S V S E S S+++S ++
Sbjct: 407 VSSSSEVSSSSEVSSS-SEVSSSSEVSSSSQVISS--SEVVSSSSEVSSSSEVVSSSSEV 463
Query: 665 WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNH---ASDVE 721
S +S S + + S++ S ++ S E S + E S+ +S E
Sbjct: 464 ---SSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 520
Query: 722 HSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAP 781
S S+ S+ + + + ++ + +I + + + + + S S + SS S+
Sbjct: 521 VSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVS 580
Query: 782 TS 783
+S
Sbjct: 581 SS 582
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 129 (50.5 bits), Expect = 0.00046, P = 0.00046
Identities = 113/602 (18%), Positives = 234/602 (38%)
Query: 197 KYCHAWIRNMPCSVPDCLYLHDF-GSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 255
KY +W+ SV + DF Q+DS + ++ + +T G T++ +
Sbjct: 6 KYKVSWV--FVLSVAGSSLIRDFLFGQDDSLSIEKRTNEYTTPEY----GGTSHCNGGDK 59
Query: 256 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 315
N P D K++ + P S + + S+++ +++S V+ S
Sbjct: 60 NCYPQCFDHRGQPKKDKCC--FDKHNKVLYPYPCTSSSSS--SSSSSTVSSSSSEVISSS 115
Query: 316 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDP 375
+ ++ ++ S+ +S+ + +E++S++ + + ++SKV +
Sbjct: 116 SEEASSSEITSSSEISSSSEVSSSSEVLSSSEIISSSSEVVS-------SSSKVSSSSEA 168
Query: 376 LELGKEYIDALS---STNEEATLDSIPATATSNQYITCRPTSKSSEKDIAXXXXXXXXXX 432
E I + S S++ + T S +++S + S SSE +
Sbjct: 169 TSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEV 228
Query: 433 XXXXXXXXXXVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVPNSS-ISKHVSVN 491
SS IV + S + + S E S VV +SS +S V+
Sbjct: 229 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEVS 287
Query: 492 LPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDF--DDLQFKGLEDMHHLPPI-SSTP 548
E S S Q ++ + S + + ++ + SS+
Sbjct: 288 SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSS 347
Query: 549 HLPHN--LNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITN--E 604
+ + ++ SS +S + V++ S + S V EV+ S SE S+ +++ E
Sbjct: 348 EVSSSSEVSSSSEVS-SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 406
Query: 605 ASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADA 664
SS + ++ + SS SEV S + +++ S V S E S S+++S ++
Sbjct: 407 VSSSSEVSSSSEVSSS-SEVSSSSEVSSSSQVISS--SEVVSSSSEVSSSSEVVSSSSEV 463
Query: 665 WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNH---ASDVE 721
S +S S + + S++ S ++ S E S + E S+ +S E
Sbjct: 464 ---SSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 520
Query: 722 HSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAP 781
S S+ S+ + + + ++ + +I + + + + + S S + SS S+
Sbjct: 521 VSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVS 580
Query: 782 TS 783
+S
Sbjct: 581 SS 582
>UNIPROTKB|F1NJG9 [details] [associations]
symbol:F1NJG9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AADN02026962
IPI:IPI00584580 Ensembl:ENSGALT00000034308
GeneTree:ENSGT00680000101527 OMA:LEWEICK Uniprot:F1NJG9
Length = 95
Score = 97 (39.2 bits), Expect = 0.00097, P = 0.00097
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 5 AEKTCPLCAEEMDLTDQQLKPC--NCGYEICVWCWNHIMEMAEKDGTE-GR--CPACR 57
+E CP+C E D D+Q K NC + +C C IM+ A DG E GR CP CR
Sbjct: 4 SEDECPICTEPYD--DEQHKAALLNCNHGLCHACLRAIMDTA--DGAEFGRVRCPICR 57
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 995 966 0.00096 122 3 11 23 0.44 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 625 (66 KB)
Total size of DFA: 469 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 100.34u 0.12s 100.46t Elapsed: 00:00:04
Total cpu time: 100.35u 0.12s 100.47t Elapsed: 00:00:04
Start: Thu May 9 19:34:47 2013 End: Thu May 9 19:34:51 2013