BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001923
(995 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4
PE=1 SV=3
Length = 575
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 150/236 (63%), Gaps = 8/236 (3%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>sp|Q8BT14|CNOT4_MOUSE CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4
PE=1 SV=2
Length = 575
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 150/236 (63%), Gaps = 8/236 (3%)
Query: 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CW+ I + G CPACR Y ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
+ E + R+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+
Sbjct: 69 PLSQEE-LQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLK 127
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188
R EYFG++GK+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR
Sbjct: 128 RPEYFGKFGKIHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 185
Query: 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 244
L+A GTTKYC +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 186 LKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MOT2 PE=1 SV=1
Length = 587
Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 131/372 (35%), Positives = 196/372 (52%), Gaps = 54/372 (14%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60
+S+ E CPLC E MD+TD+ PC CGY+IC +C+N+I + E +G RCPACR Y
Sbjct: 25 LSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNG---RCPACRRKY 81
Query: 61 DKEKIVGMAAN-----CERA-VARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYI 114
D E + + + ERA +AR ER+ + ++ K R HL+ RVIQ+NLVY+
Sbjct: 82 DDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYV 141
Query: 115 IGLPINLADEDL---LQRKEYFGQYGKVLKVSISR------TATGDIQHSANNSCCVYIT 165
+G+ + E++ L+ ++YFGQYGK+ K+ ++R T + H + VYIT
Sbjct: 142 VGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYIT 201
Query: 166 YSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDS 225
+ +DDA RCI V +DGR ++A +GTTKYC +++R +PC P+C++LH+ G + DS
Sbjct: 202 FGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADS 261
Query: 226 FTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPPPADEYINSNI-TSTAKPIAKNSSNI 284
F K E+ + + QQ G T RSG I++NI TSTA
Sbjct: 262 FNKREL---HNKQQAQQQSGGT--AFTRSG----------IHNNISTSTA---------- 296
Query: 285 IENPNNGSCADIVAGKSNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASN--GPQ 342
GS ++++ P+ A+ MR ++ N PV P+ P SN G
Sbjct: 297 ------GSNTNLLSENFTGTPSPAA--MRAQLHHDSHTNAGTPVLTPAPVPAGSNPWGVT 348
Query: 343 VPGTEVVSTTIS 354
T V S +S
Sbjct: 349 QSATPVTSINLS 360
>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16C9.04c PE=3 SV=1
Length = 489
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 13/236 (5%)
Query: 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62
D+ + CPLC EE+D++D+ KPC CGY +C +CW+HI K+ GRCPACR Y +
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI-----KEDLNGRCPACRRLYTE 66
Query: 63 EKIVGMAANCERAVARMTSERRQKSQKAKPKPSE--GRMHLTNVRVIQRNLVYIIGLPIN 120
E + E + + +K ++ + K E R HL N+RV+Q+NL Y+ GL
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 121 LADED---LLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177
+A+E+ +L+ EYFGQYGK++K++I++ A + SAN VYITY R++DA R I
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIKIAINKKAAAN---SANGHVGVYITYQRKEDAARAIA 183
Query: 178 SVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVS 233
++ + DGR LRA +GTTKYC +++RN C P C+YLH+ G + DS+TK+++ S
Sbjct: 184 AIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLAS 239
>sp|Q66JB7|RFOX2_XENTR RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis GN=rbfox2
PE=2 SV=1
Length = 380
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q S+ ++ KP+ R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 98 QNSENSESKPTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 141
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189
I + + ++T+ DA R + +HS +++GR +
Sbjct: 142 -------IFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKI 179
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 23/105 (21%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q ++ ++ K S R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 161 QNNENSETKASPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 204
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189
I + + ++T+ DA R + +HS +++GR +
Sbjct: 205 -------IFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKI 242
>sp|Q9JJ43|RFOX1_MOUSE RNA binding protein fox-1 homolog 1 OS=Mus musculus GN=Rbfox1 PE=1
SV=3
Length = 396
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 36/167 (21%)
Query: 63 EKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLA 122
+ + G A + A + Q S+ + K R+H++N+ P
Sbjct: 82 QTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNI-------------PFRFR 128
Query: 123 DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182
D DL Q FGQ+GK+L V I I + + ++T+ DA R + +H
Sbjct: 129 DPDLRQM---FGQFGKILDVEI-------IFNERGSKGFGFVTFENSADADRAREKLHGT 178
Query: 183 ILDGRPLRACFGTTK----------YCHAWIRNMPCSVPDCLYLHDF 219
+++GR + T + Y + W N V +Y DF
Sbjct: 179 VVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN---PVVGAVYSPDF 222
>sp|Q95KI0|RFOX1_MACFA RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis
GN=RBFOX1 PE=2 SV=1
Length = 376
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 33/155 (21%)
Query: 61 DKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPIN 120
+ + + G A + A + Q S+ + K R+H++N+ P
Sbjct: 83 NAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNI-------------PFR 129
Query: 121 LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180
D DL ++ FGQ+GK+L V I I + + ++T+ DA R + +H
Sbjct: 130 FRDPDL---RQMFGQFGKILDVEI-------IFNERGSKGFGFVTFENSADADRAREKLH 179
Query: 181 SYILDGRPLRACFGTTK----------YCHAWIRN 205
+++GR + T + Y + W N
Sbjct: 180 GTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 214
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 168 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 211
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 195
I + + ++T+ DA R + +H +++GR + T
Sbjct: 212 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 264
Query: 196 -TKYCHAW 202
T Y + W
Sbjct: 265 VTPYANGW 272
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 151 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 194
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 195
I + + ++T+ DA R + +H +++GR + T
Sbjct: 195 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 247
Query: 196 -TKYCHAW 202
T Y + W
Sbjct: 248 VTPYANGW 255
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 169 EDDAIRCIQSVHSYILDGRPLRA 191
+D A+ C +++++ L GR ++A
Sbjct: 61 KDSALNCTRAINNKQLFGRVIKA 83
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 169 EDDAIRCIQSVHSYILDGRPLRA 191
+D A+ C +++++ L GR ++A
Sbjct: 61 KDSALNCTRAINNKQLFGRVIKA 83
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 109 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 152
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 195
I + + ++T+ DA R + +H +++GR + T
Sbjct: 153 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 205
Query: 196 -TKYCHAW 202
T Y + W
Sbjct: 206 VTPYANGW 213
>sp|Q5NVN8|RFOX1_PONAB RNA binding protein fox-1 homolog 1 OS=Pongo abelii GN=RBFOX1 PE=2
SV=1
Length = 382
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 33/153 (21%)
Query: 63 EKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLA 122
+ + G A + A + Q S+ + K R+H++N+ P
Sbjct: 83 QTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNI-------------PFRFR 129
Query: 123 DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182
D DL ++ FGQ+GK+L V I I + + ++T+ DA R + +H
Sbjct: 130 DPDL---RQMFGQFGKILDVEI-------IFNERGSKGFGFVTFENSADADRAREKLHGT 179
Query: 183 ILDGRPLRACFGTTK----------YCHAWIRN 205
+++GR + T + Y + W N
Sbjct: 180 VVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 212
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 85 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 144
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 117 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 160
Query: 145 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 195
I + + ++T+ DA R + +H +++GR + T
Sbjct: 161 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 213
Query: 196 -TKYCHAW 202
T Y + W
Sbjct: 214 VTPYANGW 221
>sp|Q9NWB1|RFOX1_HUMAN RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1
SV=2
Length = 397
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 33/153 (21%)
Query: 63 EKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLA 122
+ + G A + A + Q S+ + K R+H++N+ P
Sbjct: 83 QTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNI-------------PFRFR 129
Query: 123 DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182
D DL Q FGQ+GK+L V I I + + ++T+ DA R + +H
Sbjct: 130 DPDLRQM---FGQFGKILDVEI-------IFNERGSKGFGFVTFENSADADRAREKLHGT 179
Query: 183 ILDGRPLRACFGTTK----------YCHAWIRN 205
+++GR + T + Y + W N
Sbjct: 180 VVEGRKIEVNNATARVMTNKKTVNPYTNGWKLN 212
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
++ VY+ LP +L + DL + F +YGKV+KV+I + D + S +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDK--DTRRSKG---VAFILFLD 60
Query: 169 EDDAIRCIQSVHSYILDGRPLRA 191
+D A C +++++ L GR ++A
Sbjct: 61 KDSAQNCTRAINNKQLFGRVIKA 83
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 169 EDDAIRCIQSVHSYILDGRPLRA 191
+D A C +++++ L GR ++A
Sbjct: 61 KDSAQNCTRAINNKQLFGRVIKA 83
>sp|B3QIT8|GLMU_RHOPT Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
TIE-1) GN=glmU PE=3 SV=1
Length = 452
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 622 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL-TSPYSFAKLLR 680
+E+G G+++G + S+VAP+ + VG S+I+K + DA A E ++ T+ +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGTGAYVGSGSVITKDVPDDALAVERNVQTAKDGWAKRFR 440
Query: 681 ESNRQH 686
++ +H
Sbjct: 441 DAKSRH 446
>sp|Q642J5|RFOX1_DANRE RNA binding protein fox-1 homolog 1 OS=Danio rerio GN=rbfox1 PE=2
SV=1
Length = 373
Score = 40.8 bits (94), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 37/127 (29%)
Query: 89 KAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTA 148
K +PK R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 115 KTQPK----RLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI---- 150
Query: 149 TGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK----------Y 198
I + + ++T+ DA R + +H +++GR + T + Y
Sbjct: 151 ---IFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 207
Query: 199 CHAWIRN 205
+ W N
Sbjct: 208 ANGWKLN 214
>sp|Q0PF16|TRIM5_MACMU Tripartite motif-containing protein 5 OS=Macaca mulatta GN=TRIM5
PE=1 SV=2
Length = 497
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR
Sbjct: 7 LNVKEEVTCPIC---LELLTEPLS-LHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
+Y E I R VA + + R+ K P EG+
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q2YEN2|TRIM5_MACAS Tripartite motif-containing protein 5 OS=Macaca assamensis
GN=TRIM5 PE=3 SV=1
Length = 497
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR
Sbjct: 7 LNVKEEVTCPIC---LELLTEPLS-LHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
+Y E I R VA + + R+ K P EG+
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q587N6|TRIM5_MACFA Tripartite motif-containing protein 5 OS=Macaca fascicularis
GN=TRIM5 PE=2 SV=1
Length = 495
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR
Sbjct: 7 LNVKEEVTCPIC---LELLTEPL-SLHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
+Y E I R VA + + R+ K P EG+
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q5D7J2|TRIM5_PAPAN Tripartite motif-containing protein 5 OS=Papio anubis GN=TRIM5
PE=3 SV=1
Length = 497
Score = 40.4 bits (93), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C E LT+ PC G+ C C NH M K+G E CP CR
Sbjct: 7 LNVKEEVTCPICLEL--LTEPLSLPC--GHSFCQACITANHRKSMLYKEG-ERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEG 97
+Y E I R VA + + R+ K P EG
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEG 91
>sp|Q2YEN0|TRIM5_MACNE Tripartite motif-containing protein 5 OS=Macaca nemestrina
GN=TRIM5 PE=3 SV=1
Length = 495
Score = 40.4 bits (93), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR
Sbjct: 7 LNVKEEVTCPIC---LELLTEPL-SLHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
+Y E I R VA + + R+ K P EG+
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q498L2|SLTM_XENLA SAFB-like transcription modulator OS=Xenopus laevis GN=sltm PE=2
SV=1
Length = 998
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
RNL ++ GL N DL K FG+YGKVL + A S C +T S
Sbjct: 345 RNL-WVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSS 395
Query: 169 EDDAIRCIQSVHSYILDGRPL 189
D RCI +H L G+ +
Sbjct: 396 SADVARCISHLHRTELHGQQI 416
>sp|Q5D7J0|TRIM5_COLGU Tripartite motif-containing protein 5 OS=Colobus guereza GN=TRIM5
PE=3 SV=1
Length = 495
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR +Y
Sbjct: 10 KEEVTCPIC---LELLTEPLS-LHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRISYQ 64
Query: 62 KEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
E I R VA + + R+ K P EG+
Sbjct: 65 PENI-----RPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q5D7I9|TRIM5_PYGNE Tripartite motif-containing protein 5 OS=Pygathrix nemaeus
GN=TRIM5 PE=3 SV=1
Length = 495
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C ++L + L +CG+ C C NH M K+G E CP CR +Y
Sbjct: 10 KEEVTCPIC---LELLTEPLS-LHCGHSFCQACITANHKKSMLYKEG-ERSCPVCRISYQ 64
Query: 62 KEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
E I R VA + + R+ K P EG+
Sbjct: 65 PENI-----RPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 5 AEKTCPLCAEEMDLTDQQLKPC---NCGYEICVWCWNHIMEMAEKDGTEGRCPACR 57
E CP+C EE Q+ PC C + C C + ++ G +G CP CR
Sbjct: 1104 GENECPICLEE-----SQISPCYLPRCMHSACKACLVDYLGQCKQKGDQGACPTCR 1154
>sp|P49960|PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP24 PE=1
SV=1
Length = 444
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDD 171
+ I L L DE+LL +E F +G + K++I G +HS NN CC ++ + +D
Sbjct: 212 IMIRNLSTELLDENLL--RESFEGFGSIEKINI---PAGQKEHSFNN-CCAFMVFENKDS 265
Query: 172 AIRCIQSVHSYI 183
A R +Q S +
Sbjct: 266 AERALQMNRSLL 277
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 69 AANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQ 128
++ E A +M+S + +K K K +GR+ + RNL ++ GL DL
Sbjct: 371 SSTSEGADQKMSSFKEEKDIKPIIKDEKGRVGSGS----GRNL-WVSGLSSTTRATDL-- 423
Query: 129 RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187
K F +YGKV+ + A S C ++T S D+A +CI +H L GR
Sbjct: 424 -KNLFSKYGKVVGAKVVTNA-----RSPGARCYGFVTMSTSDEATKCISHLHRTELHGR 476
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63
K E TCP+C ++L Q L +CG+ C C E + D E CP CR +Y E
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHEKSMLDKGESSCPVCRISYQPE 65
Query: 64 KI 65
I
Sbjct: 66 NI 67
>sp|Q136Z3|GLMU_RHOPS Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
BisB5) GN=glmU PE=3 SV=1
Length = 452
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 622 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWE-DSLTSPYSFAKLLR 680
+E+G G+++G + S+VAP+ V + VG S+++K + D+ A E + T +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGVGAYVGSGSVVTKNVPDDSLAVERNDQTVRVGWAKRFR 440
Query: 681 ESN 683
E++
Sbjct: 441 ETS 443
>sp|Q6N6F8|GLMU_RHOPA Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=glmU PE=3 SV=1
Length = 452
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 622 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL-TSPYSFAKLLR 680
+E+G G+++G + S+VAP+ + VG S+I+K + A A E ++ T+ +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGTGAYVGSGSVITKDVPDGALAVERNVQTAKDGWAKRFR 440
Query: 681 ESNRQH 686
++ +H
Sbjct: 441 DAKSRH 446
>sp|Q5C8U4|TRIM5_CERPY Tripartite motif-containing protein 5 OS=Cercopithecus
pygerythrus GN=TRIM5 PE=2 SV=1
Length = 515
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C E LT+ PC G+ +C C NH M K+ E CP CR +Y
Sbjct: 10 KEEVTCPICLEL--LTEPLSLPC--GHSLCQACITANHKESMLYKE-EERSCPVCRISYQ 64
Query: 62 KEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
E I R VA + + R+ K P EG+
Sbjct: 65 PENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168
++ VY+ LP +L + DL + F +YGKV+KV+I + + S + ++ +
Sbjct: 9 KSTVYVSNLPFSLTNNDLHR---IFSKYGKVVKVTILKD-----KDSRKSKGVSFVLFLD 60
Query: 169 EDDAIRCIQSVHSYILDGRPLRA 191
++ A C++ +++ L GR ++A
Sbjct: 61 KESAQNCVRGLNNKQLFGRAIKA 83
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDD 171
+++ +P NL ++DL K F Q+GK+ ++++ + +++ + C ++TY D
Sbjct: 49 LFVGQIPRNLEEKDL---KPLFEQFGKIYELTVLKD-----RYTGMHKGCAFLTYCARDS 100
Query: 172 AIRCIQSVH 180
AI+ ++H
Sbjct: 101 AIKAQTALH 109
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYI 164
R ++ +Y+ LP+++ ++ L ++ F Q+GK+L V + R +G ++ C ++
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGL---QDLFSQFGKMLSVKVMRDNSG------HSRCFGFV 236
Query: 165 TYSREDDAIRCIQSVHSYILDGRPLRA 191
+ + ++A + + ++ + GR L A
Sbjct: 237 NFEKHEEAQKAVVHMNGKEVSGRLLYA 263
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5
PE=1 SV=1
Length = 493
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C ++L Q L +CG+ C C NH M +K E CP CR +Y
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHKKSMLDKG--ESSCPVCRISYQ 63
Query: 62 KEKI 65
E I
Sbjct: 64 PENI 67
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 79 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 138
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 139 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 199 CH 200
H
Sbjct: 199 PH 200
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 79 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 138
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 139 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 199 CH 200
H
Sbjct: 199 PH 200
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 79 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 138
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 139 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 199 CH 200
H
Sbjct: 199 PH 200
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 79 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 138
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 139 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 199 CH 200
H
Sbjct: 199 PH 200
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5
PE=3 SV=1
Length = 493
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C ++L Q L +CG+ C C NH M +K E CP CR +Y
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHKKSMLDKG--ESSCPVCRISYQ 63
Query: 62 KEKI 65
E I
Sbjct: 64 PENI 67
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C ++L Q L +CG+ C C NH M +K E CP CR +Y
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHKKSMLDKG--ESSCPVCRISYQ 63
Query: 62 KEKI 65
E I
Sbjct: 64 PENI 67
>sp|Q5C8U3|TRIM5_CERTA Tripartite motif-containing protein 5 OS=Cercopithecus tantalus
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRTAYD 61
K E TCP+C E LT+ PC G+ C C NH M K+ E CP CR +Y
Sbjct: 10 KEEVTCPICLEL--LTEPLSLPC--GHSFCQACITANHKESMLYKE-EERSCPVCRISYQ 64
Query: 62 KEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
E I R VA + + R+ K P EG+
Sbjct: 65 PENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q587N7|TRIM5_CHLAE Tripartite motif-containing protein 5 OS=Chlorocebus aethiops
GN=TRIM5 PE=2 SV=1
Length = 515
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCW--NHIMEMAEKDGTEGRCPACRT 58
++ K E TCP+C E LT+ PC G+ C C NH M K+ E CP CR
Sbjct: 7 LNVKEEVTCPICLEL--LTEPLSLPC--GHSFCQACITANHKESMLYKE-EERSCPVCRI 61
Query: 59 AYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
+Y E I R VA + + R+ K P EG+
Sbjct: 62 SYQPENI-----QPNRHVANIVEKLRE----VKLSPEEGQ 92
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 73 ERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEY 132
E A +M+S + ++ K K +GR ++ RNL ++ GL + DL K
Sbjct: 419 EGADQKMSSVKEEQDIKPVIKDEKGRASCSS----GRNL-WVSGLSSSTRAADL---KSL 470
Query: 133 FGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187
F ++GKV+ + A S C ++T S D+A +CI +H L GR
Sbjct: 471 FSKHGKVIGAKVVTNA-----RSPGARCYGFVTMSTSDEATKCISHLHRTELHGR 520
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63
K E TCP+C ++L Q L +CG+ C C + + D E CP CR +Y +
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHK 65
Query: 64 KIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
I R VA + + R+ K P EG+
Sbjct: 66 NI-----QPNRHVANIVEKLRE----VKLSPEEGQ 91
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63
K E TCP+C ++L Q L +CG+ C C + + D E CP CR +Y +
Sbjct: 10 KEEVTCPIC---LELLTQPLS-LDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHK 65
Query: 64 KIVGMAANCERAVARMTSERRQKSQKAKPKPSEGR 98
I R VA + +K ++ K P EG+
Sbjct: 66 NI-----QPNRHVANIV----EKLREVKLSPEEGQ 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,835,791
Number of Sequences: 539616
Number of extensions: 16015920
Number of successful extensions: 39563
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 38069
Number of HSP's gapped (non-prelim): 1214
length of query: 995
length of database: 191,569,459
effective HSP length: 127
effective length of query: 868
effective length of database: 123,038,227
effective search space: 106797181036
effective search space used: 106797181036
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)