Query 001925
Match_columns 995
No_of_seqs 249 out of 756
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 12:31:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5175 MOT2 Transcriptional r 100.0 4.4E-79 9.5E-84 648.6 17.9 229 2-237 10-243 (480)
2 KOG2068 MOT2 transcription fac 100.0 4E-59 8.6E-64 497.8 12.1 306 29-349 1-309 (327)
3 PF14570 zf-RING_4: RING/Ubox 99.8 3.7E-21 8.1E-26 158.2 3.1 48 9-61 1-48 (48)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.9E-13 6.2E-18 143.5 10.8 80 111-198 271-350 (352)
5 PLN03134 glycine-rich RNA-bind 99.4 4.2E-13 9E-18 130.7 10.9 89 100-197 26-114 (144)
6 PF00076 RRM_1: RNA recognitio 99.4 4E-13 8.8E-18 110.0 8.2 70 112-190 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.1E-12 4.5E-17 137.0 10.6 81 109-197 3-83 (352)
8 KOG0114 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 116.5 9.5 81 102-193 9-91 (124)
9 PF14259 RRM_6: RNA recognitio 99.3 2E-11 4.2E-16 102.1 8.7 70 112-190 1-70 (70)
10 KOG4206 Spliceosomal protein s 99.2 2.2E-11 4.9E-16 126.8 7.9 87 106-200 5-93 (221)
11 TIGR01659 sex-lethal sex-letha 99.2 4.9E-11 1.1E-15 131.0 10.2 110 108-236 106-215 (346)
12 KOG0148 Apoptosis-promoting RN 99.2 4.3E-11 9.2E-16 127.7 8.6 90 94-197 144-238 (321)
13 smart00362 RRM_2 RNA recogniti 99.2 9.8E-11 2.1E-15 93.3 8.6 72 111-192 1-72 (72)
14 KOG0111 Cyclophilin-type pepti 99.2 1.5E-11 3.2E-16 128.3 4.6 84 106-197 7-90 (298)
15 PLN03120 nucleic acid binding 99.2 9.1E-11 2E-15 125.1 10.1 76 108-195 3-78 (260)
16 KOG0125 Ataxin 2-binding prote 99.2 4.6E-11 9.9E-16 129.9 7.6 79 109-197 96-174 (376)
17 KOG0107 Alternative splicing f 99.2 5.6E-11 1.2E-15 120.7 7.7 78 109-199 10-87 (195)
18 TIGR01628 PABP-1234 polyadenyl 99.1 7.1E-11 1.5E-15 134.5 8.4 81 108-197 284-364 (562)
19 TIGR01659 sex-lethal sex-letha 99.1 1.8E-10 4E-15 126.6 10.8 82 108-197 192-275 (346)
20 cd00590 RRM RRM (RNA recogniti 99.1 3.3E-10 7.2E-15 90.7 9.3 74 111-193 1-74 (74)
21 TIGR01645 half-pint poly-U bin 99.1 1.6E-10 3.4E-15 135.1 10.5 81 110-198 205-285 (612)
22 COG0724 RNA-binding proteins ( 99.1 2.9E-10 6.4E-15 109.1 10.6 80 109-196 115-194 (306)
23 TIGR01645 half-pint poly-U bin 99.1 1.2E-10 2.5E-15 136.1 8.9 79 109-195 107-185 (612)
24 smart00360 RRM RNA recognition 99.1 3.9E-10 8.5E-15 89.3 7.9 71 114-192 1-71 (71)
25 PF13893 RRM_5: RNA recognitio 99.1 3.3E-10 7.1E-15 92.4 7.6 55 130-194 2-56 (56)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.5E-10 9.7E-15 125.4 11.2 82 108-197 294-375 (509)
27 KOG0122 Translation initiation 99.1 3.2E-10 6.9E-15 119.7 9.4 81 109-197 189-269 (270)
28 TIGR01622 SF-CC1 splicing fact 99.1 3.5E-10 7.7E-15 124.8 10.1 79 109-195 186-264 (457)
29 KOG4207 Predicted splicing fac 99.1 1.1E-10 2.3E-15 121.2 5.3 79 109-195 13-91 (256)
30 KOG0149 Predicted RNA-binding 99.0 2.3E-10 5E-15 120.2 6.3 76 110-194 13-88 (247)
31 TIGR01628 PABP-1234 polyadenyl 99.0 5.6E-10 1.2E-14 127.3 9.8 110 111-237 2-111 (562)
32 PLN03213 repressor of silencin 99.0 4E-10 8.7E-15 127.1 8.4 79 110-200 11-91 (759)
33 KOG0121 Nuclear cap-binding pr 99.0 4.2E-10 9.2E-15 110.1 6.8 78 108-193 35-112 (153)
34 TIGR01622 SF-CC1 splicing fact 99.0 1.7E-09 3.7E-14 119.5 12.4 116 109-236 89-208 (457)
35 KOG0145 RNA-binding protein EL 99.0 1.2E-09 2.6E-14 116.4 9.9 81 110-198 279-359 (360)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.3E-09 2.8E-14 123.4 10.3 75 109-196 275-350 (481)
37 KOG0148 Apoptosis-promoting RN 99.0 9.6E-10 2.1E-14 117.6 7.1 80 111-198 64-143 (321)
38 smart00361 RRM_1 RNA recogniti 98.9 2.4E-09 5.3E-14 91.8 7.5 59 131-192 7-70 (70)
39 TIGR01648 hnRNP-R-Q heterogene 98.9 2.4E-09 5.2E-14 124.8 9.3 89 108-206 57-146 (578)
40 KOG0126 Predicted RNA-binding 98.9 3.7E-10 8E-15 115.5 1.6 74 111-192 37-110 (219)
41 KOG0105 Alternative splicing f 98.9 2.4E-09 5.3E-14 109.9 6.8 83 110-203 7-89 (241)
42 PLN03121 nucleic acid binding 98.9 5.8E-09 1.3E-13 110.5 9.2 76 109-196 5-80 (243)
43 TIGR01648 hnRNP-R-Q heterogene 98.9 6.4E-09 1.4E-13 121.3 9.6 75 110-200 234-310 (578)
44 KOG0131 Splicing factor 3b, su 98.8 3.1E-09 6.6E-14 108.8 5.6 81 107-195 7-87 (203)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 1.3E-08 2.9E-13 115.3 9.5 79 109-197 394-480 (481)
46 KOG0108 mRNA cleavage and poly 98.8 1.3E-08 2.8E-13 115.4 8.2 79 110-196 19-97 (435)
47 KOG0117 Heterogeneous nuclear 98.7 3E-08 6.6E-13 111.5 9.2 105 107-236 81-186 (506)
48 KOG0113 U1 small nuclear ribon 98.6 1E-07 2.3E-12 103.3 8.9 86 110-203 102-187 (335)
49 KOG2068 MOT2 transcription fac 98.6 2.5E-08 5.4E-13 109.2 3.0 54 7-66 250-303 (327)
50 KOG0117 Heterogeneous nuclear 98.6 9.5E-08 2.1E-12 107.7 7.3 76 100-196 255-330 (506)
51 KOG0127 Nucleolar protein fibr 98.5 1.7E-07 3.7E-12 107.6 8.4 115 110-233 293-424 (678)
52 TIGR01642 U2AF_lg U2 snRNP aux 98.5 1.6E-07 3.4E-12 105.3 8.1 84 110-195 410-500 (509)
53 KOG0130 RNA-binding protein RB 98.5 1.1E-07 2.4E-12 94.1 6.0 83 107-197 70-152 (170)
54 KOG0127 Nucleolar protein fibr 98.5 1.9E-07 4.1E-12 107.2 8.3 80 109-197 117-196 (678)
55 KOG0144 RNA-binding protein CU 98.5 7.2E-08 1.6E-12 108.3 4.6 87 105-200 120-209 (510)
56 KOG0132 RNA polymerase II C-te 98.4 6.6E-07 1.4E-11 105.9 8.9 105 98-224 406-514 (894)
57 KOG0147 Transcriptional coacti 98.4 3.2E-07 7E-12 105.3 6.3 79 112-198 281-359 (549)
58 KOG0124 Polypyrimidine tract-b 98.3 5.9E-07 1.3E-11 99.5 5.0 76 109-192 113-188 (544)
59 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.3E-06 2.8E-11 100.7 7.0 78 109-195 406-483 (940)
60 KOG0146 RNA-binding protein ET 98.2 8.9E-07 1.9E-11 95.3 4.9 82 109-198 285-366 (371)
61 KOG4208 Nucleolar RNA-binding 98.2 3E-06 6.4E-11 88.5 7.9 78 109-194 49-127 (214)
62 KOG0145 RNA-binding protein EL 98.2 2.9E-06 6.2E-11 91.3 7.8 110 109-237 41-150 (360)
63 KOG0533 RRM motif-containing p 98.2 2.9E-06 6.2E-11 90.6 7.7 76 110-194 84-159 (243)
64 KOG0110 RNA-binding protein (R 98.2 4.3E-06 9.2E-11 98.6 8.8 123 106-236 512-635 (725)
65 KOG0144 RNA-binding protein CU 98.2 2.8E-06 6E-11 95.9 6.9 77 112-196 37-116 (510)
66 KOG0131 Splicing factor 3b, su 98.2 2.1E-06 4.5E-11 88.5 5.2 89 99-197 88-177 (203)
67 KOG0123 Polyadenylate-binding 98.1 6.3E-06 1.4E-10 92.2 8.5 71 112-193 79-149 (369)
68 KOG0109 RNA-binding protein LA 98.1 2.6E-06 5.6E-11 92.6 5.0 71 111-197 4-74 (346)
69 KOG0153 Predicted RNA-binding 98.0 7.6E-06 1.6E-10 90.6 7.0 74 110-197 229-303 (377)
70 KOG0123 Polyadenylate-binding 98.0 1E-05 2.2E-10 90.6 7.9 72 111-196 3-74 (369)
71 KOG0151 Predicted splicing reg 98.0 8.6E-06 1.9E-10 96.0 7.2 111 107-222 172-289 (877)
72 KOG0109 RNA-binding protein LA 98.0 7.5E-06 1.6E-10 89.1 5.2 83 109-207 78-160 (346)
73 KOG0415 Predicted peptidyl pro 98.0 1.4E-05 3.1E-10 88.7 7.3 94 95-196 224-318 (479)
74 KOG1548 Transcription elongati 97.9 3.4E-05 7.5E-10 85.5 8.6 61 131-200 295-357 (382)
75 KOG4660 Protein Mei2, essentia 97.8 1.2E-05 2.6E-10 92.9 3.9 89 96-197 62-150 (549)
76 KOG1548 Transcription elongati 97.8 6.5E-05 1.4E-09 83.4 8.4 89 102-199 127-223 (382)
77 KOG0124 Polypyrimidine tract-b 97.8 4.6E-05 1E-09 85.0 6.8 75 110-192 211-285 (544)
78 KOG0147 Transcriptional coacti 97.6 6.3E-05 1.4E-09 87.1 6.1 75 131-219 472-547 (549)
79 KOG0110 RNA-binding protein (R 97.6 3.9E-05 8.5E-10 90.8 4.2 79 109-195 613-691 (725)
80 KOG4205 RNA-binding protein mu 97.6 3.8E-05 8.3E-10 84.6 3.7 75 109-192 6-80 (311)
81 KOG4454 RNA binding protein (R 97.5 3.3E-05 7.2E-10 81.7 1.8 73 111-193 11-83 (267)
82 KOG2202 U2 snRNP splicing fact 97.5 5.2E-05 1.1E-09 81.4 2.4 81 132-219 88-175 (260)
83 KOG0106 Alternative splicing f 97.5 7.6E-05 1.6E-09 78.8 3.6 71 111-197 3-73 (216)
84 KOG4205 RNA-binding protein mu 97.5 0.00015 3.2E-09 80.1 5.9 85 110-203 98-182 (311)
85 PF11608 Limkain-b1: Limkain b 97.4 0.00067 1.4E-08 63.3 7.9 72 110-196 3-76 (90)
86 KOG1190 Polypyrimidine tract-b 97.3 0.00064 1.4E-08 77.1 8.0 102 109-237 297-398 (492)
87 PF13920 zf-C3HC4_3: Zinc fing 97.3 0.00013 2.8E-09 59.6 2.0 48 5-62 1-49 (50)
88 KOG4212 RNA-binding protein hn 97.2 0.0005 1.1E-08 78.4 6.7 72 109-193 536-607 (608)
89 KOG4209 Splicing factor RNPS1, 97.2 0.00056 1.2E-08 72.7 6.4 80 109-197 101-180 (231)
90 KOG0116 RasGAP SH3 binding pro 97.1 0.00087 1.9E-08 76.7 7.1 80 112-200 291-370 (419)
91 KOG0146 RNA-binding protein ET 97.1 0.00096 2.1E-08 72.6 6.9 95 90-200 7-104 (371)
92 KOG1995 Conserved Zn-finger pr 97.1 0.00057 1.2E-08 76.3 4.9 97 106-210 63-167 (351)
93 KOG4212 RNA-binding protein hn 97.0 0.0017 3.7E-08 74.2 8.0 78 106-192 40-119 (608)
94 PLN02189 cellulose synthase 97.0 0.00033 7.1E-09 86.6 2.5 51 7-62 35-88 (1040)
95 TIGR00570 cdk7 CDK-activating 97.0 0.0012 2.6E-08 73.1 6.3 55 6-66 3-59 (309)
96 KOG1457 RNA binding protein (c 96.9 0.0029 6.4E-08 67.7 8.5 80 110-196 35-117 (284)
97 PF13639 zf-RING_2: Ring finge 96.9 0.00026 5.6E-09 56.4 0.3 44 7-57 1-44 (44)
98 KOG1996 mRNA splicing factor [ 96.9 0.0011 2.3E-08 73.0 4.8 60 130-193 304-363 (378)
99 KOG0120 Splicing factor U2AF, 96.9 0.0024 5.1E-08 74.6 7.8 62 130-193 427-488 (500)
100 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0022 4.9E-08 54.0 5.1 52 110-176 2-53 (53)
101 PLN02436 cellulose synthase A 96.7 0.00084 1.8E-08 83.3 2.5 51 7-62 37-90 (1094)
102 cd00162 RING RING-finger (Real 96.6 0.002 4.3E-08 48.8 3.3 44 8-59 1-44 (45)
103 PLN03208 E3 ubiquitin-protein 96.6 0.0019 4.1E-08 67.6 4.1 60 5-68 17-86 (193)
104 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0034 7.4E-08 59.5 4.9 76 109-189 6-83 (100)
105 KOG2314 Translation initiation 96.5 0.0043 9.3E-08 72.8 6.2 78 109-192 58-139 (698)
106 PF08777 RRM_3: RNA binding mo 96.4 0.0068 1.5E-07 57.5 6.3 58 111-182 3-60 (105)
107 PHA02929 N1R/p28-like protein; 96.3 0.0032 7E-08 67.6 4.0 51 5-61 173-227 (238)
108 PF04059 RRM_2: RNA recognitio 96.1 0.041 8.9E-07 52.1 9.7 82 109-197 1-87 (97)
109 KOG4211 Splicing factor hnRNP- 95.8 0.053 1.2E-06 63.2 10.6 78 111-200 12-89 (510)
110 PLN02248 cellulose synthase-li 95.5 0.011 2.4E-07 74.1 4.2 51 7-63 125-179 (1135)
111 KOG4210 Nuclear localization s 95.4 0.0087 1.9E-07 65.5 2.5 85 110-203 185-273 (285)
112 KOG2177 Predicted E3 ubiquitin 95.4 0.0075 1.6E-07 59.7 1.8 48 4-61 11-58 (386)
113 PLN02195 cellulose synthase A 95.4 0.0094 2E-07 74.0 3.0 58 1-63 1-61 (977)
114 smart00504 Ubox Modified RING 95.4 0.016 3.4E-07 48.5 3.4 50 6-65 1-50 (63)
115 KOG1365 RNA-binding protein Fu 95.2 0.019 4.1E-07 65.3 4.2 83 98-191 271-356 (508)
116 PF13923 zf-C3HC4_2: Zinc fing 95.1 0.013 2.8E-07 45.9 1.9 39 9-56 1-39 (39)
117 KOG1456 Heterogeneous nuclear 95.1 0.13 2.8E-06 58.8 10.3 76 109-196 287-362 (494)
118 KOG0120 Splicing factor U2AF, 95.1 0.018 3.9E-07 67.5 3.8 84 105-196 285-368 (500)
119 PF14634 zf-RING_5: zinc-RING 95.1 0.022 4.8E-07 45.9 3.2 44 8-58 1-44 (44)
120 KOG0317 Predicted E3 ubiquitin 94.9 0.019 4.2E-07 63.2 3.3 54 3-66 236-289 (293)
121 KOG3152 TBP-binding protein, a 94.9 0.017 3.7E-07 62.8 2.9 76 108-188 73-157 (278)
122 KOG1190 Polypyrimidine tract-b 94.9 0.036 7.8E-07 63.5 5.4 70 114-195 155-226 (492)
123 KOG0320 Predicted E3 ubiquitin 94.8 0.021 4.6E-07 59.4 3.2 52 6-65 131-182 (187)
124 TIGR00599 rad18 DNA repair pro 94.8 0.041 8.8E-07 63.1 5.6 52 4-65 24-75 (397)
125 KOG0106 Alternative splicing f 94.7 0.019 4.1E-07 61.2 2.5 79 97-191 84-165 (216)
126 smart00184 RING Ring finger. E 94.4 0.042 9.1E-07 40.1 3.1 39 9-56 1-39 (39)
127 PF14569 zf-UDP: Zinc-binding 94.3 0.042 9.1E-07 50.7 3.5 54 5-63 8-64 (80)
128 COG5236 Uncharacterized conser 94.3 0.027 5.8E-07 63.5 2.7 55 3-65 58-112 (493)
129 PF05290 Baculo_IE-1: Baculovi 94.1 0.04 8.6E-07 55.3 3.2 56 4-64 78-135 (140)
130 KOG1456 Heterogeneous nuclear 94.1 0.41 9E-06 54.9 11.2 78 114-204 127-206 (494)
131 PF00097 zf-C3HC4: Zinc finger 94.0 0.036 7.8E-07 43.2 2.2 41 9-56 1-41 (41)
132 PLN02638 cellulose synthase A 94.0 0.026 5.7E-07 70.8 2.1 50 7-61 18-70 (1079)
133 PLN02915 cellulose synthase A 94.0 0.031 6.7E-07 70.0 2.6 51 7-62 16-69 (1044)
134 KOG0226 RNA-binding proteins [ 93.8 0.059 1.3E-06 58.9 4.0 77 110-194 191-267 (290)
135 PHA02926 zinc finger-like prot 93.7 0.07 1.5E-06 57.4 4.2 57 5-61 169-230 (242)
136 KOG4307 RNA binding protein RB 93.2 0.21 4.5E-06 60.6 7.5 73 112-193 870-943 (944)
137 PLN02400 cellulose synthase 93.2 0.041 8.9E-07 69.2 1.8 50 7-61 37-89 (1085)
138 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.11 2.4E-06 56.0 4.4 64 5-75 112-175 (260)
139 KOG2416 Acinus (induces apopto 92.8 0.075 1.6E-06 63.2 3.0 74 109-196 444-521 (718)
140 PF13445 zf-RING_UBOX: RING-ty 92.7 0.078 1.7E-06 43.6 2.2 43 9-54 1-43 (43)
141 KOG4206 Spliceosomal protein s 92.5 0.32 6.8E-06 52.3 6.9 75 108-195 145-220 (221)
142 PF08952 DUF1866: Domain of un 92.3 0.3 6.5E-06 49.7 6.2 52 131-196 55-106 (146)
143 KOG0129 Predicted RNA-binding 92.3 0.24 5.1E-06 58.3 6.2 106 102-215 363-487 (520)
144 KOG3002 Zn finger protein [Gen 92.2 0.094 2E-06 58.3 2.8 47 4-62 46-92 (299)
145 KOG4285 Mitotic phosphoprotein 91.8 0.29 6.4E-06 54.7 5.9 65 110-190 198-262 (350)
146 KOG4211 Splicing factor hnRNP- 91.7 0.41 9E-06 56.2 7.1 73 110-192 104-177 (510)
147 PF15227 zf-C3HC4_4: zinc fing 91.5 0.11 2.4E-06 42.1 1.8 42 9-56 1-42 (42)
148 COG5432 RAD18 RING-finger-cont 90.8 0.12 2.7E-06 57.4 1.8 46 7-64 26-73 (391)
149 KOG0112 Large RNA-binding prot 90.7 0.29 6.3E-06 60.6 4.9 91 105-209 451-545 (975)
150 KOG1457 RNA binding protein (c 90.6 0.23 4.9E-06 53.8 3.5 63 110-184 211-273 (284)
151 KOG0129 Predicted RNA-binding 90.1 0.93 2E-05 53.6 8.1 80 110-196 260-342 (520)
152 PF12861 zf-Apc11: Anaphase-pr 89.4 0.39 8.5E-06 45.1 3.6 54 5-61 20-82 (85)
153 PF10309 DUF2414: Protein of u 88.6 1.3 2.8E-05 39.4 6.1 56 107-179 3-62 (62)
154 KOG0115 RNA-binding protein p5 88.1 0.68 1.5E-05 50.9 4.9 68 104-180 26-93 (275)
155 KOG0802 E3 ubiquitin ligase [P 87.3 0.3 6.5E-06 57.7 1.9 55 4-65 289-345 (543)
156 COG5243 HRD1 HRD ubiquitin lig 87.3 0.41 8.8E-06 54.9 2.7 49 5-59 286-343 (491)
157 PF04847 Calcipressin: Calcipr 86.4 1 2.2E-05 47.1 4.9 56 130-196 13-70 (184)
158 KOG2164 Predicted E3 ubiquitin 85.7 0.68 1.5E-05 54.7 3.5 51 6-63 186-238 (513)
159 KOG1365 RNA-binding protein Fu 85.6 1.8 4E-05 50.0 6.7 58 112-178 164-225 (508)
160 KOG1855 Predicted RNA-binding 85.4 0.75 1.6E-05 53.5 3.6 83 107-193 229-320 (484)
161 KOG4307 RNA binding protein RB 85.4 0.54 1.2E-05 57.2 2.6 84 100-192 423-509 (944)
162 KOG0311 Predicted E3 ubiquitin 85.1 0.26 5.5E-06 56.1 -0.2 50 6-63 43-92 (381)
163 COG5574 PEX10 RING-finger-cont 84.7 0.67 1.4E-05 51.1 2.7 51 4-62 213-263 (271)
164 KOG3800 Predicted E3 ubiquitin 84.5 1.2 2.6E-05 49.7 4.5 53 8-65 2-55 (300)
165 KOG2135 Proteins containing th 83.5 0.53 1.2E-05 55.2 1.5 77 106-196 369-445 (526)
166 PF08675 RNA_bind: RNA binding 83.3 3.2 7E-05 39.3 6.1 56 109-180 8-63 (87)
167 KOG0287 Postreplication repair 83.2 0.53 1.1E-05 53.5 1.2 50 6-65 23-72 (442)
168 PF04564 U-box: U-box domain; 83.1 1.4 3E-05 39.2 3.6 52 6-66 4-55 (73)
169 KOG0128 RNA-binding protein SA 82.4 0.55 1.2E-05 58.1 1.0 77 109-194 736-812 (881)
170 KOG2857 Predicted MYND Zn-fing 81.2 0.63 1.4E-05 47.4 0.8 28 26-62 2-29 (157)
171 PF12678 zf-rbx1: RING-H2 zinc 80.9 1.2 2.6E-05 39.8 2.4 47 5-57 18-73 (73)
172 KOG0823 Predicted E3 ubiquitin 79.7 1.3 2.7E-05 48.2 2.5 59 3-68 44-102 (230)
173 COG5222 Uncharacterized conser 79.0 2.8 6.1E-05 47.2 4.9 44 7-58 275-318 (427)
174 PF10650 zf-C3H1: Putative zin 78.8 1.1 2.3E-05 33.3 1.1 20 198-217 2-21 (23)
175 KOG4676 Splicing factor, argin 78.6 2 4.4E-05 49.8 3.8 73 112-190 10-82 (479)
176 KOG1941 Acetylcholine receptor 76.8 1.1 2.4E-05 51.8 1.1 50 5-58 364-413 (518)
177 PF15023 DUF4523: Protein of u 76.5 9.7 0.00021 39.5 7.5 71 110-193 87-158 (166)
178 PF03467 Smg4_UPF3: Smg-4/UPF3 76.1 3.5 7.7E-05 42.6 4.4 70 109-184 7-80 (176)
179 KOG4265 Predicted E3 ubiquitin 74.9 1.5 3.2E-05 50.0 1.5 50 4-62 288-337 (349)
180 KOG4172 Predicted E3 ubiquitin 74.8 1 2.2E-05 39.8 0.2 47 6-61 7-54 (62)
181 PHA02825 LAP/PHD finger-like p 74.7 2.4 5.1E-05 44.1 2.7 50 4-63 6-61 (162)
182 KOG1812 Predicted E3 ubiquitin 73.7 4.2 9.1E-05 46.8 4.7 60 6-65 146-207 (384)
183 KOG2193 IGF-II mRNA-binding pr 72.8 2.6 5.7E-05 49.3 2.8 76 110-199 2-78 (584)
184 KOG2923 Uncharacterized conser 69.2 2.1 4.5E-05 38.7 0.8 33 21-58 20-52 (67)
185 PF11767 SET_assoc: Histone ly 68.9 6.6 0.00014 35.4 3.8 29 162-190 36-64 (66)
186 KOG0297 TNF receptor-associate 68.2 3.3 7.2E-05 47.6 2.3 53 4-65 19-71 (391)
187 KOG0128 RNA-binding protein SA 67.9 0.79 1.7E-05 56.8 -2.8 70 108-185 666-735 (881)
188 PF07191 zinc-ribbons_6: zinc- 67.3 0.63 1.4E-05 42.4 -2.8 42 6-62 1-42 (70)
189 PF11793 FANCL_C: FANCL C-term 65.8 3.3 7.2E-05 37.0 1.4 53 6-61 2-66 (70)
190 COG5216 Uncharacterized conser 63.7 2.5 5.4E-05 37.9 0.2 36 18-58 16-52 (67)
191 KOG2591 c-Mpl binding protein, 62.8 11 0.00023 45.8 5.1 86 100-203 165-255 (684)
192 KOG4185 Predicted E3 ubiquitin 61.1 13 0.00028 40.3 5.1 49 7-60 4-54 (296)
193 KOG0112 Large RNA-binding prot 60.9 2.2 4.7E-05 53.4 -0.9 77 109-194 372-448 (975)
194 KOG4574 RNA-binding protein (c 58.4 5.9 0.00013 49.7 2.1 83 100-197 290-374 (1007)
195 COG5220 TFB3 Cdk activating ki 58.3 5.4 0.00012 44.0 1.6 51 6-61 10-64 (314)
196 PF08274 PhnA_Zn_Ribbon: PhnA 56.5 4.1 8.8E-05 31.8 0.3 26 7-32 3-29 (30)
197 COG5183 SSM4 Protein involved 56.2 7.8 0.00017 48.6 2.6 54 5-65 11-70 (1175)
198 KOG0804 Cytoplasmic Zn-finger 55.6 6.1 0.00013 46.7 1.6 48 5-60 174-221 (493)
199 PF14608 zf-CCCH_2: Zinc finge 54.7 7.3 0.00016 27.3 1.2 16 199-217 2-18 (19)
200 KOG2879 Predicted E3 ubiquitin 54.5 9.3 0.0002 42.9 2.6 50 5-61 238-287 (298)
201 KOG1785 Tyrosine kinase negati 53.2 6.5 0.00014 45.9 1.3 46 7-60 370-415 (563)
202 KOG0825 PHD Zn-finger protein 51.7 11 0.00024 47.1 3.0 58 7-64 97-174 (1134)
203 KOG1815 Predicted E3 ubiquitin 50.2 23 0.00049 41.4 5.0 67 3-72 67-137 (444)
204 KOG0824 Predicted E3 ubiquitin 50.0 13 0.00029 42.1 3.0 51 6-65 7-57 (324)
205 KOG2193 IGF-II mRNA-binding pr 46.5 1.2 2.5E-05 52.1 -5.9 70 112-193 83-153 (584)
206 COG5219 Uncharacterized conser 45.9 9.1 0.0002 48.8 1.0 49 4-60 1467-1522(1525)
207 smart00356 ZnF_C3H1 zinc finge 44.7 18 0.00039 25.7 2.0 23 196-219 4-27 (27)
208 KOG3161 Predicted E3 ubiquitin 44.0 11 0.00024 46.3 1.3 48 7-65 12-59 (861)
209 KOG4849 mRNA cleavage factor I 43.9 20 0.00042 41.6 3.1 77 108-190 79-155 (498)
210 KOG0826 Predicted E3 ubiquitin 41.4 14 0.0003 42.4 1.5 40 6-57 300-342 (357)
211 PF00642 zf-CCCH: Zinc finger 40.3 11 0.00025 28.0 0.5 24 195-218 2-26 (27)
212 KOG4210 Nuclear localization s 39.8 17 0.00037 40.5 1.9 109 110-232 89-203 (285)
213 PF02318 FYVE_2: FYVE-type zin 39.5 15 0.00032 35.7 1.2 49 5-58 53-102 (118)
214 KOG0978 E3 ubiquitin ligase in 39.0 17 0.00038 45.1 2.0 51 7-66 644-694 (698)
215 KOG1493 Anaphase-promoting com 38.2 28 0.00061 32.9 2.7 54 6-60 20-80 (84)
216 PF04423 Rad50_zn_hook: Rad50 37.3 21 0.00046 30.1 1.7 17 49-65 19-35 (54)
217 smart00744 RINGv The RING-vari 37.2 34 0.00074 28.8 2.9 46 8-57 1-49 (49)
218 PF01485 IBR: IBR domain; Int 37.0 18 0.00039 30.1 1.2 33 5-37 17-55 (64)
219 PHA02862 5L protein; Provision 36.4 29 0.00062 36.1 2.7 46 7-62 3-54 (156)
220 KOG3039 Uncharacterized conser 36.4 23 0.00049 39.5 2.1 56 7-68 222-277 (303)
221 KOG4628 Predicted E3 ubiquitin 35.7 24 0.00053 40.7 2.3 48 8-62 231-279 (348)
222 KOG1039 Predicted E3 ubiquitin 35.2 28 0.00061 40.1 2.7 54 5-60 160-220 (344)
223 KOG3113 Uncharacterized conser 34.9 27 0.00058 39.1 2.4 61 7-75 112-172 (293)
224 KOG1729 FYVE finger containing 34.3 7.9 0.00017 43.4 -1.7 60 2-62 164-226 (288)
225 PF11781 RRN7: RNA polymerase 33.0 22 0.00048 28.6 1.0 25 8-32 10-35 (36)
226 PF14447 Prok-RING_4: Prokaryo 32.5 21 0.00046 31.6 0.9 32 26-65 23-54 (55)
227 PF07800 DUF1644: Protein of u 31.1 43 0.00093 35.2 3.0 54 5-60 1-90 (162)
228 KOG0105 Alternative splicing f 30.4 1.2E+02 0.0027 33.0 6.2 61 109-184 115-175 (241)
229 KOG4159 Predicted E3 ubiquitin 30.3 32 0.00069 40.4 2.2 48 6-63 84-131 (398)
230 PF03880 DbpA: DbpA RNA bindin 29.9 42 0.0009 30.0 2.4 67 116-194 8-74 (74)
231 PF07576 BRAP2: BRCA1-associat 29.4 2.9E+02 0.0064 27.2 8.2 68 109-185 12-80 (110)
232 PRK04023 DNA polymerase II lar 29.2 31 0.00067 44.6 1.9 46 5-63 625-676 (1121)
233 KOG1842 FYVE finger-containing 28.2 21 0.00046 42.4 0.3 40 2-41 176-215 (505)
234 PRK11595 DNA utilization prote 28.2 43 0.00094 35.6 2.6 40 7-61 6-45 (227)
235 PF05605 zf-Di19: Drought indu 27.9 32 0.00069 29.1 1.2 38 6-58 2-39 (54)
236 smart00064 FYVE Protein presen 27.6 49 0.0011 28.6 2.4 41 1-41 5-45 (68)
237 PF12906 RINGv: RING-variant d 27.5 41 0.0009 28.1 1.8 41 9-56 1-47 (47)
238 PF10571 UPF0547: Uncharacteri 27.4 39 0.00084 25.7 1.4 21 8-31 2-23 (26)
239 TIGR00143 hypF [NiFe] hydrogen 27.4 11 0.00024 46.7 -2.2 34 159-194 184-217 (711)
240 KOG1492 C3H1-type Zn-finger pr 27.1 24 0.00052 38.7 0.5 26 198-224 263-288 (377)
241 TIGR00416 sms DNA repair prote 27.0 29 0.00063 40.8 1.1 24 21-58 5-29 (454)
242 KOG1001 Helicase-like transcri 26.7 27 0.00059 43.3 0.9 50 7-65 455-504 (674)
243 KOG4213 RNA-binding protein La 26.4 57 0.0012 35.1 3.0 63 107-180 109-171 (205)
244 PF12773 DZR: Double zinc ribb 26.3 50 0.0011 27.1 2.1 42 9-63 1-42 (50)
245 COG5178 PRP8 U5 snRNP spliceos 24.8 40 0.00086 44.3 1.7 19 862-881 110-128 (2365)
246 KOG3053 Uncharacterized conser 24.4 34 0.00075 38.4 1.0 55 4-61 18-82 (293)
247 PF12773 DZR: Double zinc ribb 23.8 68 0.0015 26.3 2.4 29 3-31 9-38 (50)
248 KOG0804 Cytoplasmic Zn-finger 22.6 2.1E+02 0.0046 34.6 6.8 67 109-185 74-141 (493)
249 PRK11823 DNA repair protein Ra 22.6 42 0.00091 39.4 1.3 24 21-58 5-29 (446)
250 PF06827 zf-FPG_IleRS: Zinc fi 22.3 6.4 0.00014 29.7 -3.5 28 31-58 2-29 (30)
251 KOG0828 Predicted E3 ubiquitin 21.7 65 0.0014 39.1 2.6 14 6-19 571-584 (636)
252 PF12677 DUF3797: Domain of un 21.5 40 0.00086 29.4 0.6 26 7-32 14-48 (49)
253 KOG1812 Predicted E3 ubiquitin 21.3 47 0.001 38.6 1.3 35 7-41 307-342 (384)
No 1
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=100.00 E-value=4.4e-79 Score=648.59 Aligned_cols=229 Identities=45% Similarity=0.920 Sum_probs=207.1
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhccccchHHHHHHH--
Q 001925 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERAVARM-- 79 (995)
Q Consensus 2 sDe~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~~~~eel~a~~-- 79 (995)
|+|+|..||||+|+||+||++|+||+||||||+||||+|+ .+.+||||||||-|+++.+.|.++++||+..++
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~ir-----q~lngrcpacrr~y~denv~~~~~s~ee~kmel~r 84 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR-----QNLNGRCPACRRKYDDENVRYVTLSPEELKMELAR 84 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHH-----hhccCCChHhhhhccccceeEEecCHHHHHHHHHh
Confidence 4566677999999999999999999999999999999996 479999999999999999999999999997664
Q ss_pred HHHHHHhhhhcCCCCCcCcCCCCCcccccCCEEEEeCCCCCCChHH---HHHhHhhhcCCCceEEEEEeecCCCCcccCC
Q 001925 80 TSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADED---LLQRKEYFGQYGKVLKVSISRTATGDIQHSA 156 (995)
Q Consensus 80 ~~~kkqK~qk~K~k~se~RK~LanVRVIQKNLVYVvGLP~~IAeED---LLRk~EyFGQYGKIiKIvInrd~~g~~q~~~ 156 (995)
+.+||++++++|+.+-.+||||+++||||||||||+||++++++|+ +|+++|||||||+|.||+|++.....+ ..
T Consensus 85 k~erk~rekerke~e~~nrkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~n--st 162 (480)
T COG5175 85 KEERKMREKERKEAEGQNRKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLN--ST 162 (480)
T ss_pred hhhhhccHHHHhhhhcccccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccc--cc
Confidence 3466666777788888899999999999999999999999999999 899999999999999999998664321 11
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhc
Q 001925 157 NNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 157 ~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
....++||||.++|||.+||..|||..+|||.|||+|||||||++||||++|.||+||||||.|+++|+|||+||....+
T Consensus 163 ~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh 242 (480)
T COG5175 163 ASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQH 242 (480)
T ss_pred cccceEEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhhh
Confidence 22367899999999999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred c
Q 001925 237 R 237 (995)
Q Consensus 237 r 237 (995)
.
T Consensus 243 ~ 243 (480)
T COG5175 243 K 243 (480)
T ss_pred h
Confidence 3
No 2
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=100.00 E-value=4e-59 Score=497.84 Aligned_cols=306 Identities=40% Similarity=0.675 Sum_probs=253.3
Q ss_pred CCchhhhhHHHHHHhhhccCCCCCCccccccccccchhccccchHHHHHHHHHHHHHhhhhcCCCCCcCcCCCCCccccc
Q 001925 29 GYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQ 108 (995)
Q Consensus 29 GYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~~~~eel~a~~~~~kkqK~qk~K~k~se~RK~LanVRVIQ 108 (995)
|||||.||||||++++++ +|||||||++|++++|+++.+.+++++++.+++|| |+++.|.+...+|+||.++||||
T Consensus 1 ~yqIc~~cwh~i~~~~~~---~grcpncr~ky~e~ki~~r~~~~~~l~~~~n~~kk-~e~e~k~~~~s~r~~ls~~rvVq 76 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEK---KGRCPNCRTKYKEEKIVLRRVQWESLVAEKNKEKK-KEQEIKRKLSSNRKHLSGVRVVQ 76 (327)
T ss_pred CceeeHHHHhcccccccc---ccCCccccCccchhhhccccccHHHHHHhhhhhhh-hHHHHhhhhhhcccccccchhhh
Confidence 799999999999987755 79999999999999999999999999887766554 88888999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
||+|||+||+..+++|++|++.+||||||+|.||++.+++.. +...+...++||||.++|||.+||+.++|+.++||.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--SSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--ccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 999999999999999999999999999999999999987731 123356678999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcchhhhhhhcccccccccCCCCCCCCccccccc
Q 001925 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPPPADEYINS 268 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr~~~q~~~g~~~~~~~rsg~~lPPP~~~~~~~ 268 (995)
|+|+|||||||++|||+.+|.|++||||||+++++|+||||||+.++++. ++..+.++.++|..+..+|+|++.+...
T Consensus 155 lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~~~~--~~~~~~~n~~~~~~~~~~p~~l~~~~~~ 232 (327)
T KOG2068|consen 155 LKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAKHRE--SSRKQTSNIARRSDDKLRPQPLPNLEKQ 232 (327)
T ss_pred hHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHhhhh--hcccccccceeccCcccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999984 7777788889999999999999987655
Q ss_pred cccccccCcccCCCCcccCCCCCCCCCcC---CCCCCCCcccccccccccCCCCCCcCCCCCCCCCCCCCCCCCCCCccc
Q 001925 269 NITSTAKPIAKNSSNIIENPNNGSCADIV---AGKSNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPG 345 (995)
Q Consensus 269 ~~~ss~~p~~k~~s~~~~~~~~~s~~~~~---~~~~~aLP~~asW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 345 (995)
.+ .|..+......+.++...||-.. ...+++||++++|++..-. -+|+..+-...+-.+.....++.+|+
T Consensus 233 ---~s-~p~~~~~~~~~~~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~---~~t~~~~~~~~~~~rk~~~~~t~~s~ 305 (327)
T KOG2068|consen 233 ---RS-APDAQLDFSSVTSVPPSCPICYEDLDLTDSNFLPCPCGFRLCLFC---HKTISDGDGRCPGCRKPYERNTKKSE 305 (327)
T ss_pred ---cC-CcccccCCccccccCCCCCCCCCcccccccccccccccccchhhh---hhcccccCCCCCccCCccccCccccc
Confidence 22 55654443333344444444443 6789999999999953322 34444334444444444455555555
Q ss_pred ceee
Q 001925 346 TEVV 349 (995)
Q Consensus 346 s~v~ 349 (995)
+.+-
T Consensus 306 ~~~~ 309 (327)
T KOG2068|consen 306 TSVQ 309 (327)
T ss_pred cccc
Confidence 5554
No 3
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.82 E-value=3.7e-21 Score=158.17 Aligned_cols=48 Identities=50% Similarity=1.383 Sum_probs=30.3
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
||+|+|+||+||+.|+||+||||||+||||+|+ ++++|+||+||++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~-----~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDIL-----ENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHT-----TSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHH-----hccCCCCCCCCCCCC
Confidence 899999999999999999999999999999996 368999999999995
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=2.9e-13 Score=143.51 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=72.5
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|||+|||+.+.+++|. ++|++||.|..|.|.++..+. .++|+|||+|.+.++|.+||.+|||..++||.|+
T Consensus 271 ~lfV~NL~~~~~e~~L~---~~F~~fG~v~~v~i~~d~~t~-----~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLW---QLFGPFGAVQNVKIIRDLTTN-----QCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeEcCCCC-----CccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 59999999999887764 899999999999999887432 4689999999999999999999999999999999
Q ss_pred EEeccCCc
Q 001925 191 ACFGTTKY 198 (995)
Q Consensus 191 ASfGTTKY 198 (995)
|+|.|.|-
T Consensus 343 V~~~~~~~ 350 (352)
T TIGR01661 343 VSFKTNKA 350 (352)
T ss_pred EEEccCCC
Confidence 99999873
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=4.2e-13 Score=130.71 Aligned_cols=89 Identities=19% Similarity=0.363 Sum_probs=76.8
Q ss_pred CCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 001925 100 HLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 100 ~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL 179 (995)
.+...|-+. +.|||.|||+.+++++|. ++|++||+|.+|.|.++..+. .++++|||+|.+.|+|++||+.|
T Consensus 26 ~~~~~~~~~-~~lfVgnL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 26 MLGSLRLMS-TKLFIGGLSWGTDDASLR---DAFAHFGDVVDAKVIVDRETG-----RSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred ccccccCCC-CEEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHc
Confidence 455556554 469999999999888874 899999999999999876532 46899999999999999999999
Q ss_pred CCCCCCCeEEEEEeccCC
Q 001925 180 HSYILDGRPLRACFGTTK 197 (995)
Q Consensus 180 NG~~LdGRvLRASfGTTK 197 (995)
||..++||.|+|.+++.+
T Consensus 97 ng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 97 DGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCEECCEEEEEEeCCcC
Confidence 999999999999998764
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4e-13 Score=109.96 Aligned_cols=70 Identities=24% Similarity=0.663 Sum_probs=63.5
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
|||.|||+.+++++|. ++|++||+|..+.|.++..+ ..+++|||+|.+.++|.+|++.+||..+.|+.||
T Consensus 1 l~v~nlp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELR---DFFSQFGKIESIKVMRNSSG------KSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHH---HHHHTTSTEEEEEEEEETTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHH---HHHHHhhhcccccccccccc------cccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999985 89999999999999886322 3578999999999999999999999999999997
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.37 E-value=2.1e-12 Score=137.03 Aligned_cols=81 Identities=15% Similarity=0.364 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
++.|||+|||+.+++++|. ++|++||+|..|.|.+++... .++|+|||+|.+.|||.+||..|||..+.|+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~---~~F~~~G~i~~v~i~~d~~~g-----~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIR---SLFTSIGEIESCKLVRDKVTG-----QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHccCCEEEEEEEEcCCCC-----ccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 6789999999999999974 999999999999999876532 36799999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..+
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999998643
No 8
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=116.54 Aligned_cols=81 Identities=25% Similarity=0.528 Sum_probs=71.4
Q ss_pred CCccccc--CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 001925 102 TNVRVIQ--RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 102 anVRVIQ--KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL 179 (995)
.+.|+-| ..++||.|||++|+.|++ +|+||+||.|..|.|..++.+ +|.|||.|++.+||.+|+..|
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseem---ydlFGkyg~IrQIRiG~~k~T--------rGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEM---YDLFGKYGTIRQIRIGNTKET--------RGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHH---HHHhhcccceEEEEecCccCc--------CceEEEEehHhhhHHHHHHHh
Confidence 4455444 467999999999999998 599999999999999876643 689999999999999999999
Q ss_pred CCCCCCCeEEEEEe
Q 001925 180 HSYILDGRPLRACF 193 (995)
Q Consensus 180 NG~~LdGRvLRASf 193 (995)
.|+.+++|.|.|-|
T Consensus 78 sg~n~~~ryl~vly 91 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLY 91 (124)
T ss_pred cccccCCceEEEEe
Confidence 99999999999986
No 9
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=2e-11 Score=102.10 Aligned_cols=70 Identities=34% Similarity=0.655 Sum_probs=61.9
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
|||.|||+.+.+++|. ++|.+||.|.+|.+.+++.+ ..++.|||+|.+.++|.+|++..+|..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~---~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLR---NFFSRFGPVEKVRLIKNKDG------QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHH---HHCTTSSBEEEEEEEESTTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEeeecc------ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999998875 89999999999999987542 3578999999999999999999999999999986
No 10
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=2.2e-11 Score=126.78 Aligned_cols=87 Identities=18% Similarity=0.405 Sum_probs=78.1
Q ss_pred cccCC-EEEEeCCCCCCChHHHHHh-HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001925 106 VIQRN-LVYIIGLPINLADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 106 VIQKN-LVYVvGLP~~IAeEDLLRk-~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
.+-.| ++||-+|+.+|..++|.|. +.+|+|||+|++|++.++.. -+|.|||.|.+.+.|..|+.+|+|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K--------mRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK--------MRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC--------ccCceEEEecChhHHHHHHHHhcCCc
Confidence 34445 9999999999999997665 89999999999999987654 36889999999999999999999999
Q ss_pred CCCeEEEEEeccCCccc
Q 001925 184 LDGRPLRACFGTTKYCH 200 (995)
Q Consensus 184 LdGRvLRASfGTTKYCs 200 (995)
+.|+++|+.|+.+|-|.
T Consensus 77 FygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDI 93 (221)
T ss_pred ccCchhheecccCccch
Confidence 99999999999998876
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.20 E-value=4.9e-11 Score=131.00 Aligned_cols=110 Identities=17% Similarity=0.329 Sum_probs=84.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...+|||.+||+.+++++|. ++|.+||+|++|.|.++..+. ..+++|||+|.++|+|.+||..|||..+.|+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~---~lF~~~G~V~~v~i~~d~~tg-----~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELY---ALFRTIGPINTCRIMRDYKTG-----YSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----ccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 46789999999999988874 899999999999998876532 3578999999999999999999999999999
Q ss_pred EEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhc
Q 001925 188 PLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 188 vLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
.|+|.|++..... + ...-+|+--+ ....|.|||.....
T Consensus 178 ~i~V~~a~p~~~~--~------~~~~lfV~nL---p~~vtee~L~~~F~ 215 (346)
T TIGR01659 178 RLKVSYARPGGES--I------KDTNLYVTNL---PRTITDDQLDTIFG 215 (346)
T ss_pred eeeeecccccccc--c------ccceeEEeCC---CCcccHHHHHHHHH
Confidence 9999998653211 0 1111343333 23567788776543
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.3e-11 Score=127.69 Aligned_cols=90 Identities=17% Similarity=0.369 Sum_probs=76.4
Q ss_pred CCcCcCCCCCccccc-----CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCC
Q 001925 94 PSEGRMHLTNVRVIQ-----RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 168 (995)
Q Consensus 94 ~se~RK~LanVRVIQ-----KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsr 168 (995)
...++|.|.--.|+- ..+|||+|++.-++++ +|| +.|++||.|..|+|-+++ ++|||.|++
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~-~mr--~~Fs~fG~I~EVRvFk~q-----------GYaFVrF~t 209 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTED-LMR--QTFSPFGPIQEVRVFKDQ-----------GYAFVRFET 209 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHH-HHH--HhcccCCcceEEEEeccc-----------ceEEEEecc
Confidence 345666666666653 5789999999988654 554 899999999999998764 589999999
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEEeccCC
Q 001925 169 EDDAIRCIQSVHSYILDGRPLRACFGTTK 197 (995)
Q Consensus 169 kEDA~rAIqaLNG~~LdGRvLRASfGTTK 197 (995)
+|.|.+||..|||.++.|.++||+||.+.
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999999999874
No 13
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=9.8e-11 Score=93.26 Aligned_cols=72 Identities=29% Similarity=0.621 Sum_probs=64.2
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+|||.|||..++.++|. ++|.+||+|..|.+.++. + .+.+.|||+|.+.++|.+|+..++|..+.|+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~---~~~~~~g~v~~~~~~~~~-~------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLK---ELFSKFGPIESVKIPKDT-G------KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHH---HHHHhcCCEEEEEEecCC-C------CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 48999999999999985 899999999999998665 2 2467899999999999999999999999999998
Q ss_pred EE
Q 001925 191 AC 192 (995)
Q Consensus 191 AS 192 (995)
|.
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 14
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.5e-11 Score=128.31 Aligned_cols=84 Identities=19% Similarity=0.365 Sum_probs=75.1
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
-.||++|||+||...+ .|.+| +..|=.||.|.+|.|+.+.... ..++|+||+|.-.|||..||..||+.+|.
T Consensus 7 a~~KrtlYVGGladeV-tekvL--haAFIPFGDI~dIqiPlDyesq-----kHRgFgFVefe~aEDAaaAiDNMnesEL~ 78 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEV-TEKVL--HAAFIPFGDIKDIQIPLDYESQ-----KHRGFGFVEFEEAEDAAAAIDNMNESELF 78 (298)
T ss_pred cccceeEEeccchHHH-HHHHH--Hhccccccchhhcccccchhcc-----cccceeEEEeeccchhHHHhhcCchhhhc
Confidence 3578999999999999 45677 5899999999999999887642 35899999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001925 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||+|||+|+..-
T Consensus 79 GrtirVN~AkP~ 90 (298)
T KOG0111|consen 79 GRTIRVNLAKPE 90 (298)
T ss_pred ceeEEEeecCCc
Confidence 999999999873
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.17 E-value=9.1e-11 Score=125.07 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=67.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..+.|||+||++.+++++|. ++|++||+|.+|.|.++.. ++++|||||.++++|..||. |||..|.||
T Consensus 3 ~~rtVfVgNLs~~tTE~dLr---efFS~~G~I~~V~I~~d~~--------~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIK---EFFSFSGDIEYVEMQSENE--------RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCC--------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 35689999999999988874 9999999999999987653 35799999999999999995 999999999
Q ss_pred EEEEEecc
Q 001925 188 PLRACFGT 195 (995)
Q Consensus 188 vLRASfGT 195 (995)
.|+|....
T Consensus 71 ~V~Vt~a~ 78 (260)
T PLN03120 71 SVTITPAE 78 (260)
T ss_pred eEEEEecc
Confidence 99999854
No 16
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.6e-11 Score=129.88 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-+.|||.|||++..+.||. .+|++||+|++|.|.-+..+ ++||+||||++.+||+||-+.++|+.++||+
T Consensus 96 pkRLhVSNIPFrFRdpDL~---aMF~kfG~VldVEIIfNERG-------SKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLR---AMFEKFGKVLDVEIIFNERG-------SKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CceeEeecCCccccCccHH---HHHHhhCceeeEEEEeccCC-------CCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 4679999999999999973 89999999999999876533 5789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|.|.-+|.+
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 999999988
No 17
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=5.6e-11 Score=120.67 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+||+.++.+.||- ..|+.||+|.+|+|.+. +.+||||+|++..||++|+.+|||..++|..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE---~~F~~yG~lrsvWvArn----------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELE---RAFSKYGPLRSVWVARN----------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CceEEeccCCCCcchHHHH---HHHHhcCcceeEEEeec----------CCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 4679999999999999984 89999999999999864 3578999999999999999999999999999
Q ss_pred EEEEeccCCcc
Q 001925 189 LRACFGTTKYC 199 (995)
Q Consensus 189 LRASfGTTKYC 199 (995)
|+|.+.|-++-
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999887765
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=7.1e-11 Score=134.49 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=72.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
+...|||.||++.+++++|. ++|++||.|.+|.|.++..+ .++|+|||+|.+.|+|.+||..|||..++||
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~---~~F~~~G~i~~~~i~~d~~g------~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLR---ELFSECGEITSAKVMLDEKG------VSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHH---HHHHhcCCeEEEEEEECCCC------CcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 45669999999999998874 89999999999999987543 3678999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001925 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..|
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 9999998765
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.13 E-value=1.8e-10 Score=126.59 Aligned_cols=82 Identities=21% Similarity=0.515 Sum_probs=72.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC-
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG- 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG- 186 (995)
+...|||.|||+.+++|+|. ++|++||+|++|.|.+++.+. .++++|||+|.+.|+|++||+.|||..++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~---~~F~~fG~V~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLD---TIFGKYGQIVQKNILRDKLTG-----TPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ccceeEEeCCCCcccHHHHH---HHHHhcCCEEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 45679999999999998874 899999999999999876432 467899999999999999999999999987
Q ss_pred -eEEEEEeccCC
Q 001925 187 -RPLRACFGTTK 197 (995)
Q Consensus 187 -RvLRASfGTTK 197 (995)
+.|+|.++..+
T Consensus 264 ~~~l~V~~a~~~ 275 (346)
T TIGR01659 264 SQPLTVRLAEEH 275 (346)
T ss_pred ceeEEEEECCcc
Confidence 78999998875
No 20
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3.3e-10 Score=90.69 Aligned_cols=74 Identities=31% Similarity=0.607 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|||.|||..++++++. ++|.+||.|.++.+.++... .+.+.|||+|.+.++|..|++.++|..+.|+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~---~~~~~~g~i~~~~~~~~~~~------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLR---ELFSKFGKVESVRIVRDKDT------KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHH---HHHHhcCCEEEEEEeeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 38999999999998875 89999999999999876543 2468999999999999999999999999999999
Q ss_pred EEe
Q 001925 191 ACF 193 (995)
Q Consensus 191 ASf 193 (995)
|.|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.6e-10 Score=135.07 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.3
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
+.|||+||++.+.+++|. ++|++||+|+++.|.++..+. ..+|+|||+|.+.++|.+||..|||+.++|+.|
T Consensus 205 ~rLfVgnLp~~vteedLk---~lFs~FG~I~svrl~~D~~tg-----ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIK---SVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ceEEeecCCCCCCHHHHH---HHHhhcCCeeEEEEEecCCCC-----CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 679999999999988874 899999999999999876542 368899999999999999999999999999999
Q ss_pred EEEeccCCc
Q 001925 190 RACFGTTKY 198 (995)
Q Consensus 190 RASfGTTKY 198 (995)
||.++.++-
T Consensus 277 rV~kAi~pP 285 (612)
T TIGR01645 277 RVGKCVTPP 285 (612)
T ss_pred EEEecCCCc
Confidence 999998764
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2.9e-10 Score=109.09 Aligned_cols=80 Identities=26% Similarity=0.530 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|.+||.|..|.|..+... ...+|+|||+|.+.++|..||..++|..+.||.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~---~~F~~~g~~~~~~~~~d~~~-----~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLR---ELFKKFGPVKRVRLVRDRET-----GKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHH---HHHHhcCceeEEEeeecccc-----CccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 5899999999999999985 89999999999999887632 246899999999999999999999999999999
Q ss_pred EEEEeccC
Q 001925 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.+..-
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999764
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.12 E-value=1.2e-10 Score=136.12 Aligned_cols=79 Identities=14% Similarity=0.343 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+||++.+++++|. ++|.+||+|.+|.|.+++.+. .++|+|||+|.+.|+|.+||+.|||..++||.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr---~lF~~fG~I~sV~I~~D~~Tg-----kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIR---RAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHccCCEEEEEEeecCCCC-----CcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 3569999999999888873 899999999999999876542 46899999999999999999999999999999
Q ss_pred EEEEecc
Q 001925 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|+|.+..
T Consensus 179 IkV~rp~ 185 (612)
T TIGR01645 179 IKVGRPS 185 (612)
T ss_pred eeecccc
Confidence 9998643
No 24
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=3.9e-10 Score=89.29 Aligned_cols=71 Identities=27% Similarity=0.573 Sum_probs=62.2
Q ss_pred EeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEE
Q 001925 114 IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 192 (995)
Q Consensus 114 VvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRAS 192 (995)
|.|||..+++++|. ++|.+||.|..|.|.+++.. ..++++|||+|.+.++|.+||..++|..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~---~~f~~~g~v~~~~i~~~~~~-----~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELR---ELFSKFGKIESVRLVRDKDT-----GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHH---HHHHhhCCEeEEEEEeCCCC-----CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999985 89999999999999876532 2457899999999999999999999999999999874
No 25
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=3.3e-10 Score=92.43 Aligned_cols=55 Identities=22% Similarity=0.569 Sum_probs=49.3
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEec
Q 001925 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG 194 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfG 194 (995)
+++|++||+|.+|.+.++. ++.|||+|.+.++|.+|++.+||..++|+.|+|+|+
T Consensus 2 ~~~f~~fG~V~~i~~~~~~----------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKK----------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHTTTS-EEEEEEETTS----------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred hHHhCCcccEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4899999999999997543 368999999999999999999999999999999985
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.08 E-value=4.5e-10 Score=125.44 Aligned_cols=82 Identities=12% Similarity=0.232 Sum_probs=72.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..+.|||+|||..+++++|. ++|.+||.|..|.|.++..+. ..+|+|||+|.+.++|..||..|||..++|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g-----~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIK---ELLESFGDLKAFNLIKDIATG-----LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45789999999999888874 999999999999998875432 3578999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001925 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+...
T Consensus 366 ~l~v~~a~~~ 375 (509)
T TIGR01642 366 KLHVQRACVG 375 (509)
T ss_pred EEEEEECccC
Confidence 9999998643
No 27
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.2e-10 Score=119.75 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.++|=|.||+....++||. |+|.+||.|.+|.|.+++.+. ..+|||||+|.+.|||++||..|||.-++.-+
T Consensus 189 ~~tvRvtNLsed~~E~dL~---eLf~~fg~i~rvylardK~TG-----~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLE---ELFRPFGPITRVYLARDKETG-----LSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred cceeEEecCccccChhHHH---HHhhccCccceeEEEEccccC-----cccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 4667788999999999973 999999999999999988754 47899999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|||.|++.+
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999998864
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.08 E-value=3.5e-10 Score=124.85 Aligned_cols=79 Identities=18% Similarity=0.452 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|++||.|.+|.|.++..+. ..+++|||+|.+.++|.+||..|||..+.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~---~~f~~~G~i~~v~~~~d~~~g-----~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELR---QIFEPFGDIEDVQLHRDPETG-----RSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 5679999999999988874 899999999999999876532 35789999999999999999999999999999
Q ss_pred EEEEecc
Q 001925 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|+|.|++
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 9999987
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.07 E-value=1.1e-10 Score=121.17 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|-|-||.+.++.++|. ..|.+||+|.+|.|++++.+. .++|||||.|..+.||++|+.+|||.+||||.
T Consensus 13 m~SLkVdNLTyRTspd~Lr---rvFekYG~vgDVyIPrdr~Tr-----~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLR---RVFEKYGRVGDVYIPRDRYTR-----QSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred ceeEEecceeccCCHHHHH---HHHHHhCcccceecccccccc-----cccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 4567899999999888874 799999999999999988654 57899999999999999999999999999999
Q ss_pred EEEEecc
Q 001925 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|+|+++.
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9999764
No 30
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.3e-10 Score=120.19 Aligned_cols=76 Identities=20% Similarity=0.415 Sum_probs=67.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
.+|||+||++...+|+|. +||.|||+|+..+|..|+.+. .++|++||||.+.|.|.||.+..| -.||||.-
T Consensus 13 TKifVggL~w~T~~~~l~---~yFeqfGeI~eavvitd~~t~-----rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~a 83 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLR---RYFEQFGEIVEAVVITDKNTG-----RSKGYGFVTFRDAEAATRACKDPN-PIIDGRKA 83 (247)
T ss_pred EEEEEcCcccccchHHHH---HHHHHhCceEEEEEEeccCCc-----cccceeeEEeecHHHHHHHhcCCC-Cccccccc
Confidence 579999999999888863 799999999999999887653 578999999999999999999887 58999999
Q ss_pred EEEec
Q 001925 190 RACFG 194 (995)
Q Consensus 190 RASfG 194 (995)
.|.++
T Consensus 84 NcnlA 88 (247)
T KOG0149|consen 84 NCNLA 88 (247)
T ss_pred ccchh
Confidence 88765
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=5.6e-10 Score=127.28 Aligned_cols=110 Identities=18% Similarity=0.398 Sum_probs=84.4
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|||+|||+++++++|. ++|++||.|.+|.|.++..+. .+.|+|||+|.+.+||++||..+|+..+.|+.||
T Consensus 2 sl~VgnLp~~vte~~L~---~~F~~~G~v~~v~v~~d~~t~-----~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLY---DLFKPFGPVLSVRVCRDSVTR-----RSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 58999999999988874 999999999999999887542 3578999999999999999999999999999999
Q ss_pred EEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001925 191 ACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 191 ASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+.|....- -+ ........|+.-+. ...|.++|.....+
T Consensus 74 i~~s~~~~---~~---~~~~~~~vfV~nLp---~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 74 IMWSQRDP---SL---RRSGVGNIFVKNLD---KSVDNKALFDTFSK 111 (562)
T ss_pred eecccccc---cc---cccCCCceEEcCCC---ccCCHHHHHHHHHh
Confidence 99864321 01 11122345555443 35677777755443
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=4e-10 Score=127.15 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=70.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCH--HHHHHHHHHhCCCCCCCe
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSRE--DDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrk--EDA~rAIqaLNG~~LdGR 187 (995)
..|||+||++.+.++||. ..|++||.|.+|.|.|+. .+|||||+|... +++.+||..|||..+.||
T Consensus 11 MRIYVGNLSydVTEDDLr---avFSeFGsVkdVEIpRET---------GRGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLL---KIFSPMGTVDAVEFVRTK---------GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeccc---------CCceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 468999999999999985 899999999999999543 168999999987 789999999999999999
Q ss_pred EEEEEeccCCccc
Q 001925 188 PLRACFGTTKYCH 200 (995)
Q Consensus 188 vLRASfGTTKYCs 200 (995)
.|||.-+..+|=.
T Consensus 79 ~LKVNKAKP~YLe 91 (759)
T PLN03213 79 RLRLEKAKEHYLA 91 (759)
T ss_pred eeEEeeccHHHHH
Confidence 9999999888755
No 33
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=4.2e-10 Score=110.08 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=71.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
+-++|||+||++-+++|.| +|+|++-|.|.+|+|..++... .+-|+.||.|...+||+.|++.++|+.||.|
T Consensus 35 ~S~tvyVgNlSfyttEEqi---yELFs~cG~irriiMGLdr~kk-----tpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQI---YELFSKCGDIRRIIMGLDRFKK-----TPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHH---HHHHHhccchheeEeccccCCc-----CccceEEEEEecchhHHHHHHHhccCccccc
Confidence 3689999999999999998 5999999999999998776542 4679999999999999999999999999999
Q ss_pred EEEEEe
Q 001925 188 PLRACF 193 (995)
Q Consensus 188 vLRASf 193 (995)
+||+.|
T Consensus 107 ~ir~D~ 112 (153)
T KOG0121|consen 107 PIRIDW 112 (153)
T ss_pred ceeeec
Confidence 999985
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.02 E-value=1.7e-09 Score=119.46 Aligned_cols=116 Identities=19% Similarity=0.313 Sum_probs=87.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+|||+|||..+++++|. ++|++||+|..|.|.++..+. ..+|+|||+|.+.++|.+||. ++|..+.|+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~---~~F~~~G~v~~v~i~~d~~~~-----~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~ 159 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLY---EFFSKVGKVRDVQCIKDRNSR-----RSKGVAYVEFYDVESVIKALA-LTGQMLLGRP 159 (457)
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHH-hCCCEECCee
Confidence 4679999999999999974 899999999999999876432 468999999999999999996 9999999999
Q ss_pred EEEEeccCCccccc--cc--CCCCCCCCCcccccCCCCCCCccHHHHHHhhc
Q 001925 189 LRACFGTTKYCHAW--IR--NMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 189 LRASfGTTKYCs~F--LR--n~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
|++.+...+.-..- .. .....+..++|+.-+. ...|.++|.....
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~---~~~te~~l~~~f~ 208 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLH---FNITEQELRQIFE 208 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCC---CCCCHHHHHHHHH
Confidence 99987543221110 00 1112234667776665 4578888876543
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=1.2e-09 Score=116.42 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=72.2
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
-.|||.||.+.. +|.+| +++||+||.|+.|+|.|+..+. .=+|++|||+.+.+||..||.+|||+.+.+|+|
T Consensus 279 ~ciFvYNLspd~-de~~L--WQlFgpFGAv~nVKvirD~ttn-----kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 279 WCIFVYNLSPDA-DESIL--WQLFGPFGAVTNVKVIRDFTTN-----KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred eEEEEEecCCCc-hHhHH--HHHhCcccceeeEEEEecCCcc-----cccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 469999999996 66677 6999999999999999998653 236789999999999999999999999999999
Q ss_pred EEEeccCCc
Q 001925 190 RACFGTTKY 198 (995)
Q Consensus 190 RASfGTTKY 198 (995)
.|+|-|.|-
T Consensus 351 QVsFKtnk~ 359 (360)
T KOG0145|consen 351 QVSFKTNKA 359 (360)
T ss_pred EEEEecCCC
Confidence 999999873
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.99 E-value=1.3e-09 Score=123.41 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=66.6
Q ss_pred CCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 109 RNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||.||++ .+++++| +++|++||.|.+|+|.+++ +++|||+|.+.++|.+||..|||..++|+
T Consensus 275 ~~~l~v~nL~~~~vt~~~L---~~lF~~yG~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g~ 341 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRL---FNLFCVYGNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFGK 341 (481)
T ss_pred CCEEEEeCCCCCCCCHHHH---HHHHHhcCCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46899999998 6877776 4999999999999998753 47899999999999999999999999999
Q ss_pred EEEEEeccC
Q 001925 188 PLRACFGTT 196 (995)
Q Consensus 188 vLRASfGTT 196 (995)
.|+|+|+..
T Consensus 342 ~l~v~~s~~ 350 (481)
T TIGR01649 342 PLRVCPSKQ 350 (481)
T ss_pred eEEEEEccc
Confidence 999998644
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.6e-10 Score=117.59 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=73.3
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
-|||+-|...|..|+| +|.|.+||+|.+.+|.||..+. .++|++||.|-+++||++||+.|||.+|.+|.||
T Consensus 64 hvfvgdls~eI~~e~l---r~aF~pFGevS~akvirD~~T~-----KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKL---REAFAPFGEVSDAKVIRDMNTG-----KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred eEEehhcchhcchHHH---HHHhccccccccceEeecccCC-----cccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 4899999999988876 3999999999999999987543 4688999999999999999999999999999999
Q ss_pred EEeccCCc
Q 001925 191 ACFGTTKY 198 (995)
Q Consensus 191 ASfGTTKY 198 (995)
-+|+|-|-
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99999987
No 38
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.4e-09 Score=91.84 Aligned_cols=59 Identities=32% Similarity=0.518 Sum_probs=47.7
Q ss_pred hhhc----CCCceEEEE-EeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEE
Q 001925 131 EYFG----QYGKVLKVS-ISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 192 (995)
Q Consensus 131 EyFG----QYGKIiKIv-Inrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRAS 192 (995)
++|. +||+|.+|. |..++... .+.++|+|||+|.+.+||.+||..|||..++||.|+|+
T Consensus 7 ~~~~~~~~~fG~v~~v~~v~~~~~~~---~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 7 REFSEEEEYFGEVGKINKIYIDNVGY---ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCC---CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 7777 999999885 44433210 12468999999999999999999999999999999974
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.92 E-value=2.4e-09 Score=124.78 Aligned_cols=89 Identities=18% Similarity=0.495 Sum_probs=74.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G 186 (995)
+...|||+|||..+.+++|. ++|.+||+|.+|+|.++..+ .++++|||+|.+.|+|.+||+.|||..+. |
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~---~~F~~~G~I~~vrl~~D~sG------~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELV---PLFEKAGPIYELRLMMDFSG------QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHH---HHHHhhCCEEEEEEEECCCC------CccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 35789999999999888874 89999999999999988543 36899999999999999999999999885 8
Q ss_pred eEEEEEeccCCcccccccCC
Q 001925 187 RPLRACFGTTKYCHAWIRNM 206 (995)
Q Consensus 187 RvLRASfGTTKYCs~FLRn~ 206 (995)
|.|.+..... -|.-|+.|.
T Consensus 128 r~l~V~~S~~-~~rLFVgNL 146 (578)
T TIGR01648 128 RLLGVCISVD-NCRLFVGGI 146 (578)
T ss_pred cccccccccc-CceeEeecC
Confidence 9998876643 355566553
No 40
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.7e-10 Score=115.51 Aligned_cols=74 Identities=24% Similarity=0.547 Sum_probs=69.7
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
-|||+|||+.+++.||| -.|+|||.|++|.+.|+..+. .+.||||..|+++....-|+..+||..+.||.||
T Consensus 37 ~Iyiggl~~~LtEgDil---~VFSqyGe~vdinLiRDk~TG-----KSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDIL---CVFSQYGEIVDINLIRDKKTG-----KSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred EEEECCCcccccCCcEE---EEeeccCceEEEEEEecCCCC-----cccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 48999999999999999 799999999999999998654 5789999999999999999999999999999999
Q ss_pred EE
Q 001925 191 AC 192 (995)
Q Consensus 191 AS 192 (995)
|.
T Consensus 109 VD 110 (219)
T KOG0126|consen 109 VD 110 (219)
T ss_pred ee
Confidence 98
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.4e-09 Score=109.93 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=71.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||..|.+.|| .++|-+||+|..|.+...+ .+..+|||+|++..||++||..-||..+||..|
T Consensus 7 ~~iyvGNLP~diRekei---eDlFyKyg~i~~ieLK~r~--------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEI---EDLFYKYGRIREIELKNRP--------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred ceEEecCCCcchhhccH---HHHHhhhcceEEEEeccCC--------CCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 46899999999999998 4999999999999985433 235689999999999999999999999999999
Q ss_pred EEEeccCCcccccc
Q 001925 190 RACFGTTKYCHAWI 203 (995)
Q Consensus 190 RASfGTTKYCs~FL 203 (995)
||.|..+-.-+..-
T Consensus 76 RVEfprggr~s~~~ 89 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDR 89 (241)
T ss_pred EEEeccCCCccccc
Confidence 99998886644433
No 42
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.87 E-value=5.8e-09 Score=110.48 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-.+|||+||++++++++| +|+|++||+|.+|.|.++.. .+++|||+|.++++|..|| .|+|..|.|+.
T Consensus 5 g~TV~V~NLS~~tTE~dL---refFS~~G~I~~V~I~~D~e--------t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDV---YDFFSHCGAIEHVEIIRSGE--------YACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHH---HHHHHhcCCeEEEEEecCCC--------cceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 357999999999999997 49999999999999998753 2469999999999999999 69999999999
Q ss_pred EEEEeccC
Q 001925 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|.+.-...
T Consensus 73 I~It~~~~ 80 (243)
T PLN03121 73 VCITRWGQ 80 (243)
T ss_pred EEEEeCcc
Confidence 99886544
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.85 E-value=6.4e-09 Score=121.27 Aligned_cols=75 Identities=17% Similarity=0.392 Sum_probs=66.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCC--CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQY--GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQY--GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..|||.||++.+++|+|. ++|++| |+|.+|.+.+ ++|||+|.+.|+|.+||+.|||..++||
T Consensus 234 k~LfVgNL~~~~tee~L~---~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIE---KSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAVKAMDELNGKELEGS 297 (578)
T ss_pred cEEEEeCCCCCCCHHHHH---HHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 569999999999888764 899999 9999997652 4799999999999999999999999999
Q ss_pred EEEEEeccCCccc
Q 001925 188 PLRACFGTTKYCH 200 (995)
Q Consensus 188 vLRASfGTTKYCs 200 (995)
.|+|+|++.+--.
T Consensus 298 ~I~V~~Akp~~~~ 310 (578)
T TIGR01648 298 EIEVTLAKPVDKK 310 (578)
T ss_pred EEEEEEccCCCcc
Confidence 9999999765433
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.84 E-value=3.1e-09 Score=108.79 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=72.7
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
-|.++|||+||+.++++ ++| +|+|.|-|+|+.|.|++++... ...|++||+|.++|||.-||+-||+..|.|
T Consensus 7 nqd~tiyvgnld~kvs~-~~l--~EL~iqagpVv~i~iPkDrv~~-----~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSE-ELL--YELFIQAGPVVNLHIPKDRVTQ-----KHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCCceEEEecCCHHHHH-HHH--HHHHHhcCceeeeecchhhhcc-----cccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 36789999999999965 455 6999999999999999998653 357899999999999999999999999999
Q ss_pred eEEEEEecc
Q 001925 187 RPLRACFGT 195 (995)
Q Consensus 187 RvLRASfGT 195 (995)
|.|||+-++
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 999999888
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.80 E-value=1.3e-08 Score=115.28 Aligned_cols=79 Identities=20% Similarity=0.373 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCc--eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGK--VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGK--IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
..+|||.|||..+++|+|. ++|++||. |.+|++..... ..+++|||+|.+.++|.+||..|||..++|
T Consensus 394 s~~L~v~NLp~~~tee~L~---~lF~~~G~~~i~~ik~~~~~~-------~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~ 463 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLK---ELFAENGVHKVKKFKFFPKDN-------ERSKMGLLEWESVEDAVEALIALNHHQLNE 463 (481)
T ss_pred CcEEEEecCCCCCCHHHHH---HHHHhcCCccceEEEEecCCC-------CcceeEEEEcCCHHHHHHHHHHhcCCccCC
Confidence 3579999999999988863 89999998 88888864332 136789999999999999999999999999
Q ss_pred eE------EEEEeccCC
Q 001925 187 RP------LRACFGTTK 197 (995)
Q Consensus 187 Rv------LRASfGTTK 197 (995)
+. ||++|++++
T Consensus 464 ~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 464 PNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCccceEEEEeccCC
Confidence 85 999999875
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.77 E-value=1.3e-08 Score=115.36 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=73.3
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
+.|||+|||+.+.+|+|+ ++|+++|.|..+.+..|+.+. .++|++|++|.+.|+|++||+.+||..+.||.|
T Consensus 19 ~~v~vgnip~~~se~~l~---~~~~~~g~v~s~~~v~D~~tG-----~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLL---SIFSGVGPVLSFRLVYDRETG-----KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHH---HHHhccCccceeeecccccCC-----CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 779999999999999986 999999999999999888654 578999999999999999999999999999999
Q ss_pred EEEeccC
Q 001925 190 RACFGTT 196 (995)
Q Consensus 190 RASfGTT 196 (995)
||.|...
T Consensus 91 ~v~~~~~ 97 (435)
T KOG0108|consen 91 RVNYASN 97 (435)
T ss_pred Eeecccc
Confidence 9998764
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3e-08 Score=111.54 Aligned_cols=105 Identities=20% Similarity=0.503 Sum_probs=87.9
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC-C
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-D 185 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L-d 185 (995)
-+..-|||++||..+-++||. .+|++-|+|-.+.|.+++... .++|+|||||.++|+|.+||+.+|+.++ -
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLv---plfEkiG~I~elRLMmD~~sG-----~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELV---PLFEKIGKIYELRLMMDPFSG-----DNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCceEEecCCCccccchhhH---HHHHhccceeeEEEeecccCC-----CCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 567889999999999888875 899999999999999986532 4689999999999999999999999988 6
Q ss_pred CeEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhc
Q 001925 186 GRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 186 GRvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
||.|+|+..-++ |.-|+-+++ -.-|||||.....
T Consensus 153 GK~igvc~Svan-~RLFiG~IP----------------K~k~keeIlee~~ 186 (506)
T KOG0117|consen 153 GKLLGVCVSVAN-CRLFIGNIP----------------KTKKKEEILEEMK 186 (506)
T ss_pred CCEeEEEEeeec-ceeEeccCC----------------ccccHHHHHHHHH
Confidence 999999976665 666776665 2457888875443
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=1e-07 Score=103.32 Aligned_cols=86 Identities=16% Similarity=0.411 Sum_probs=73.5
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
-+|||.-|++.+.+.+| + ++|..||+|.+|.|+++..+. .++|+|||.|+++.|-..|-+..+|..||||.|
T Consensus 102 ~TLFv~RLnydT~EskL-r--reF~~YG~IkrirlV~d~vTg-----kskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKL-R--REFEKYGPIKRIRLVRDKVTG-----KSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccccccHHHH-H--HHHHhcCcceeEEEeeecccC-----CccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 46899999999866665 3 899999999999999987643 478999999999999999999999999999999
Q ss_pred EEEeccCCcccccc
Q 001925 190 RACFGTTKYCHAWI 203 (995)
Q Consensus 190 RASfGTTKYCs~FL 203 (995)
-|.|-.-+-...||
T Consensus 174 ~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 174 LVDVERGRTVKGWL 187 (335)
T ss_pred EEEecccccccccc
Confidence 99875555455555
No 49
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=98.57 E-value=2.5e-08 Score=109.15 Aligned_cols=54 Identities=41% Similarity=1.205 Sum_probs=49.7
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
..||+|.|++|.+|..|.||+||+++|+||+..|.+ -+++||+||++|...+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~------~~~~~~~~rk~~~~~t~~ 303 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD------GDGRCPGCRKPYERNTKK 303 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc------cCCCCCccCCccccCccc
Confidence 689999999999999999999999999999999964 689999999999877654
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=9.5e-08 Score=107.66 Aligned_cols=76 Identities=24% Similarity=0.574 Sum_probs=67.4
Q ss_pred CCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 001925 100 HLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 100 ~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL 179 (995)
-++.|.| |||.||+..+++|. |+ ++|.+||+|.+|+..+| +|||.|...+||.+|+..+
T Consensus 255 ~ms~VKv-----LYVRNL~~~tTeE~-lk--~~F~~~G~veRVkk~rD-------------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 255 TMSKVKV-----LYVRNLMESTTEET-LK--KLFNEFGKVERVKKPRD-------------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred hhhheee-----eeeeccchhhhHHH-HH--HHHHhccceEEeecccc-------------eeEEeecchHHHHHHHHHh
Confidence 5666666 79999999997655 53 89999999999998744 6999999999999999999
Q ss_pred CCCCCCCeEEEEEeccC
Q 001925 180 HSYILDGRPLRACFGTT 196 (995)
Q Consensus 180 NG~~LdGRvLRASfGTT 196 (995)
||..|+|..|-|.++..
T Consensus 314 ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKP 330 (506)
T ss_pred cCceecCceEEEEecCC
Confidence 99999999999999875
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.7e-07 Score=107.56 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=90.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-----CC-CC
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV-----HS-YI 183 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL-----NG-~~ 183 (995)
-+|||.|||+..++|+| ++.|.+||+|..+.|..++.+. .+.|.|||.|.++++|..||.+. +| ..
T Consensus 293 ~tVFvRNL~fD~tEEel---~~~fskFG~v~ya~iV~~k~T~-----~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEEL---KEHFSKFGEVKYAIIVKDKDTG-----HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred ceEEEecCCccccHHHH---HHHHHhhccceeEEEEeccCCC-----CcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 38999999999988886 4999999999999988877653 46889999999999999999998 55 77
Q ss_pred CCCeEEEEEeccCCcccccc-----cCCCCCCCCCcccccCCCC------CCCccHHHHHH
Q 001925 184 LDGRPLRACFGTTKYCHAWI-----RNMPCSVPDCLYLHDFGSQ------EDSFTKDEIVS 233 (995)
Q Consensus 184 LdGRvLRASfGTTKYCs~FL-----Rn~~C~NpdCmYLHE~g~e------~DsfTKeEm~s 233 (995)
|+||.|+|..+.|+--..=+ +-++-. .-=+||---|-- .+.++.+||..
T Consensus 365 l~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~g-krNLyLa~EG~I~~gt~aAeglS~~Dm~k 424 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKEAADMEQKKKRKKPKG-KRNLYLAREGLIRDGTPAAEGLSATDMAK 424 (678)
T ss_pred EeccEEeeeeccchHHHHHHHHHhhhhccCC-ccceeeeccCccccCChhhcccchhhHHH
Confidence 89999999999997666543 222222 235777665542 44688888874
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.54 E-value=1.6e-07 Score=105.33 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=61.3
Q ss_pred CEEEEeCCCCC--C-Ch---HHHHHh-HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001925 110 NLVYIIGLPIN--L-AD---EDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (995)
Q Consensus 110 NLVYVvGLP~~--I-Ae---EDLLRk-~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~ 182 (995)
..|+|.||... + .+ ++|+.. .++|++||.|++|+|.+...... .....|+|||+|.+.|+|.+||.+|||.
T Consensus 410 ~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~--~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 410 KVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN--STPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred eEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC--cCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 45778888532 1 11 112111 48999999999999987532110 1123578999999999999999999999
Q ss_pred CCCCeEEEEEecc
Q 001925 183 ILDGRPLRACFGT 195 (995)
Q Consensus 183 ~LdGRvLRASfGT 195 (995)
.++||.|.|.|-.
T Consensus 488 ~~~gr~v~~~~~~ 500 (509)
T TIGR01642 488 KFNDRVVVAAFYG 500 (509)
T ss_pred EECCeEEEEEEeC
Confidence 9999999999844
No 53
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=1.1e-07 Score=94.13 Aligned_cols=83 Identities=14% Similarity=0.325 Sum_probs=72.4
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
|-.=.|||.|+-+..++|+| ++.|+.||+|+.|-++.++.+. --.|+|.|.|++.++|..||.++||..|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi---~d~F~dyGeiKNihLNLDRRtG-----y~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDI---HDKFADYGEIKNIHLNLDRRTG-----YVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred eeeEEEEEeccCcchhHHHH---HHHHhhcccccceeeccccccc-----cccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 33457999999999999998 5999999999999999876543 247899999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001925 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
+.|.|.|.-.|
T Consensus 142 q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 142 QNVSVDWCFVK 152 (170)
T ss_pred CceeEEEEEec
Confidence 99999986433
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.9e-07 Score=107.22 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
+=.|.|.|||+.+.+++| .-+|++||+|..|+|++...+. -.|||||+|...-+|.+||..+||..++||.
T Consensus 117 k~rLIIRNLPf~~k~~dL---k~vFs~~G~V~Ei~IP~k~dgk------lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDL---KNVFSNFGKVVEIVIPRKKDGK------LCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCcccCcHHH---HHHHhhcceEEEEEcccCCCCC------ccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 344567889999998876 3799999999999999877653 2489999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|-|.|+-.|
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999875
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=7.2e-08 Score=108.28 Aligned_cols=87 Identities=20% Similarity=0.480 Sum_probs=75.3
Q ss_pred ccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC-
Q 001925 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI- 183 (995)
Q Consensus 105 RVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~- 183 (995)
|++-...+||+=|+.+.+++|+ +|+|.+||.|.++.|.|+..+ ..+|.|||+|+.+|-|..||++|||..
T Consensus 120 r~~~e~KLFvg~lsK~~te~ev---r~iFs~fG~Ied~~ilrd~~~------~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEV---REIFSRFGHIEDCYILRDPDG------LSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred ccccchhhhhhhccccccHHHH---HHHHHhhCccchhhheecccc------cccceeEEEEehHHHHHHHHHhhcccee
Confidence 3566788999999999999998 499999999999999998765 368999999999999999999999974
Q ss_pred CCC--eEEEEEeccCCccc
Q 001925 184 LDG--RPLRACFGTTKYCH 200 (995)
Q Consensus 184 LdG--RvLRASfGTTKYCs 200 (995)
+.| ..|-|-|+-||.-.
T Consensus 191 meGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred eccCCCceEEEecccCCCc
Confidence 566 67889999887544
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.40 E-value=6.6e-07 Score=105.87 Aligned_cols=105 Identities=15% Similarity=0.341 Sum_probs=86.7
Q ss_pred cCCCCCcc----cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 001925 98 RMHLTNVR----VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 173 (995)
Q Consensus 98 RK~LanVR----VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~ 173 (995)
+|-|..|| .|.-.+|||+||+.++.++||- .+|+.||.|..|.++. +++.|||++.+..||+
T Consensus 406 ~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL~---~~feefGeiqSi~li~-----------~R~cAfI~M~~RqdA~ 471 (894)
T KOG0132|consen 406 KKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDLA---NLFEEFGEIQSIILIP-----------PRGCAFIKMVRRQDAE 471 (894)
T ss_pred cccCCCCCCcceeEeeeeeeeccccchhhHHHHH---HHHHhcccceeEeecc-----------CCceeEEEEeehhHHH
Confidence 45788887 5667789999999999988863 8999999999999873 4567999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCC
Q 001925 174 RCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQED 224 (995)
Q Consensus 174 rAIqaLNG~~LdGRvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~D 224 (995)
+|+++|....+.++.||+.||.-|--.. ..-|.|=||+|--..
T Consensus 472 kalqkl~n~kv~~k~Iki~Wa~g~G~ks--------e~k~~wD~~lGVt~I 514 (894)
T KOG0132|consen 472 KALQKLSNVKVADKTIKIAWAVGKGPKS--------EYKDYWDVELGVTYI 514 (894)
T ss_pred HHHHHHhcccccceeeEEeeeccCCcch--------hhhhhhhcccCeeEe
Confidence 9999999999999999999998876543 223566677775433
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.40 E-value=3.2e-07 Score=105.34 Aligned_cols=79 Identities=20% Similarity=0.455 Sum_probs=70.1
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 191 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRA 191 (995)
+||++|-+++.+++++ .+|..||+|..|.+.++..+. ..+||+||||.+.|+|.+|+..|||++|-||.|||
T Consensus 281 l~vgnLHfNite~~lr---~ifepfg~Ie~v~l~~d~~tG-----~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLR---GIFEPFGKIENVQLTKDSETG-----RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhcccccCchHHHHh---hhccCcccceeeeeccccccc-----cccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 8999999999877764 799999999999999876332 35789999999999999999999999999999999
Q ss_pred EeccCCc
Q 001925 192 CFGTTKY 198 (995)
Q Consensus 192 SfGTTKY 198 (995)
+..|-+-
T Consensus 353 ~~v~~r~ 359 (549)
T KOG0147|consen 353 SVVTERV 359 (549)
T ss_pred EEeeeec
Confidence 9887654
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=5.9e-07 Score=99.52 Aligned_cols=76 Identities=17% Similarity=0.394 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+-|.+.+. ||++| ..|..||.|+.|.|..+..+. ..++||||+|+=+|-|.-|++.|||..+.||.
T Consensus 113 McRvYVGSIsfEl~-EDtiR--~AF~PFGPIKSInMSWDp~T~-----kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELR-EDTIR--RAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 184 (544)
T ss_pred hHheeeeeeEEEec-hHHHH--hhccCCCCcceeecccccccc-----cccceEEEEEeCcHHHHHHHHHhccccccCcc
Confidence 35699999999995 55665 799999999999999988653 35789999999999999999999999999999
Q ss_pred EEEE
Q 001925 189 LRAC 192 (995)
Q Consensus 189 LRAS 192 (995)
|+|.
T Consensus 185 iKVg 188 (544)
T KOG0124|consen 185 IKVG 188 (544)
T ss_pred cccc
Confidence 9987
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.27 E-value=1.3e-06 Score=100.71 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
+| ++|.||.....--|| ..+|++||||+-..|+.+.. .|..++++|||+.+.+||.+||..|+-+.|.||+
T Consensus 406 RN-lWVSGLSstTRAtDL---KnlFSKyGKVvGAKVVTNaR-----sPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 406 RN-LWVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNAR-----SPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred cc-eeeeccccchhhhHH---HHHHHHhcceeceeeeecCC-----CCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 45 799999998777775 38999999999777765543 2456899999999999999999999999999999
Q ss_pred EEEEecc
Q 001925 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|-|.-+.
T Consensus 477 ISVEkaK 483 (940)
T KOG4661|consen 477 ISVEKAK 483 (940)
T ss_pred eeeeecc
Confidence 9998553
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=8.9e-07 Score=95.28 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...+||.-||.+..+.||+ ..|-.||.|+..+|-.|+.+. .+++|+||.|.+...|..||++|||+++.-+.
T Consensus 285 GCNlFIYHLPQEFgDaEli---QmF~PFGhivSaKVFvDRATN-----QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELI---QMFLPFGHIVSAKVFVDRATN-----QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cceEEEEeCchhhccHHHH---HHhccccceeeeeeeehhccc-----cccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 3568999999999999998 799999999988887777653 36899999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001925 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|||.+-..|-
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999877664
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.22 E-value=3e-06 Score=88.52 Aligned_cols=78 Identities=22% Similarity=0.460 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCC-CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQY-GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQY-GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||.-+|.-+-+-++| .||+|| |.+..+++.|++.+. +++++|||.|+++|.|.-|-..||++-+.|+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~---~~~~q~~g~v~r~rlsRnkrTG-----NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEIL---NYFRQFGGTVTRFRLSRNKRTG-----NSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHHh---hhhhhcCCeeEEEEeecccccC-----CcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 4679999999999888887 799999 777778887876543 6789999999999999999999999999999
Q ss_pred EEEEEec
Q 001925 188 PLRACFG 194 (995)
Q Consensus 188 vLRASfG 194 (995)
.|.|.|=
T Consensus 121 lL~c~vm 127 (214)
T KOG4208|consen 121 LLECHVM 127 (214)
T ss_pred eeeeEEe
Confidence 9998863
No 62
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=2.9e-06 Score=91.26 Aligned_cols=110 Identities=18% Similarity=0.401 Sum_probs=85.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
|..+.|-=||..++.||+. .+|+--|+|..+++.|++... .+-|++||.|.+++||++||..+||-.|..+.
T Consensus 41 kTNLIvNYLPQ~MTqdE~r---SLF~SiGeiEScKLvRDKitG-----qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELR---SLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cceeeeeecccccCHHHHH---HHhhcccceeeeeeeeccccc-----cccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3345677799999999973 799999999999999998753 35678999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001925 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|||+|+...--+ +|+ .-+|+--+. -+.|..||.+...+
T Consensus 113 IKVSyARPSs~~--Ik~------aNLYvSGlP---ktMtqkelE~iFs~ 150 (360)
T KOG0145|consen 113 IKVSYARPSSDS--IKD------ANLYVSGLP---KTMTQKELEQIFSP 150 (360)
T ss_pred EEEEeccCChhh--hcc------cceEEecCC---ccchHHHHHHHHHH
Confidence 999999864332 222 224444333 25677777765543
No 63
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.21 E-value=2.9e-06 Score=90.58 Aligned_cols=76 Identities=28% Similarity=0.520 Sum_probs=68.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||.||++.+.++||. |+|.+||.+.++.|..++.+. +-|.|=|+|.+.+||++||+.++|..|||+.|
T Consensus 84 ~~v~v~NL~~~V~~~Dl~---eLF~~~~~~~r~~vhy~~~G~------s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLK---ELFAEFGELKRVAVHYDRAGR------SLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHHH---HHHHHhccceEEeeccCCCCC------CCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 679999999999999985 999999999999998887663 56889999999999999999999999999998
Q ss_pred EEEec
Q 001925 190 RACFG 194 (995)
Q Consensus 190 RASfG 194 (995)
++..-
T Consensus 155 k~~~i 159 (243)
T KOG0533|consen 155 KIEII 159 (243)
T ss_pred eeEEe
Confidence 87643
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=4.3e-06 Score=98.57 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=87.2
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.++.+.+||.||++....+++. ..|..+|.|+.|.|.+.+...+ -.-+.|+|||.|.++|+|..|+++|+|+.|+
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~---~~F~k~G~VlS~~I~kkkd~~~--k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLE---DLFSKQGTVLSIEISKKKDPAN--KYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred cccchhhhhhcCCcccchhHHH---HHHHhcCeEEEEEEeccccccc--cccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 3455559999999999999985 8999999999999986553321 1235799999999999999999999999999
Q ss_pred CeEEEEEeccCCcccccccCCCCCC-CCCcccccCCCCCCCccHHHHHHhhc
Q 001925 186 GRPLRACFGTTKYCHAWIRNMPCSV-PDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 186 GRvLRASfGTTKYCs~FLRn~~C~N-pdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
|+.|.+.|.-+|--.+-- .+|.. +-|.-||=-.-+ =..|+.|+...++
T Consensus 587 GH~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNip-FeAt~rEVr~LF~ 635 (725)
T KOG0110|consen 587 GHKLELKISENKPASTVG--KKKSKKKKGTKILVRNIP-FEATKREVRKLFT 635 (725)
T ss_pred CceEEEEeccCccccccc--cccccccccceeeeeccc-hHHHHHHHHHHHh
Confidence 999999987754444332 33333 234444422111 0135666655443
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=2.8e-06 Score=95.95 Aligned_cols=77 Identities=21% Similarity=0.546 Sum_probs=66.2
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC-CCCC--eE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY-ILDG--RP 188 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~-~LdG--Rv 188 (995)
+||+-||....++||+ ++|.+||.|..|.|.||+.++ ..+|..||+|.+.+||.+||.++++. .|.| ..
T Consensus 37 lfVgqIprt~sE~dlr---~lFe~yg~V~einl~kDk~t~-----~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 37 LFVGQIPRTASEKDLR---ELFEKYGNVYEINLIKDKSTG-----QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred heeccCCccccHHHHH---HHHHHhCceeEEEeecccccC-----cccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 6999999999999985 899999999999999998764 35788999999999999999999985 4555 56
Q ss_pred EEEEeccC
Q 001925 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|-|+-+
T Consensus 109 vqvk~Ad~ 116 (510)
T KOG0144|consen 109 VQVKYADG 116 (510)
T ss_pred eeecccch
Confidence 77777655
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.16 E-value=2.1e-06 Score=88.53 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=71.6
Q ss_pred CCCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001925 99 MHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 99 K~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKI-vInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
++=.+++|- -.+||+||.+.+ +|.+| ++.|+.||.|++. .|.++..++ ++++++||.|++.|.|.+||.
T Consensus 88 ~~~~nl~vg--anlfvgNLd~~v-De~~L--~dtFsafG~l~~~P~i~rd~~tg-----~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 88 AHQKNLDVG--ANLFVGNLDPEV-DEKLL--YDTFSAFGVLISPPKIMRDPDTG-----NPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred ccccccccc--ccccccccCcch-hHHHH--HHHHHhccccccCCcccccccCC-----CCCCCeEEechhHHHHHHHHH
Confidence 344455553 457999999987 66677 7999999999873 345555432 578899999999999999999
Q ss_pred HhCCCCCCCeEEEEEeccCC
Q 001925 178 SVHSYILDGRPLRACFGTTK 197 (995)
Q Consensus 178 aLNG~~LdGRvLRASfGTTK 197 (995)
+|||+.+..|+++|+|+..|
T Consensus 158 s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HhccchhcCCceEEEEEEec
Confidence 99999999999999998654
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=6.3e-06 Score=92.19 Aligned_cols=71 Identities=18% Similarity=0.523 Sum_probs=65.1
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 191 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRA 191 (995)
|||-+|++.++.++| ++.|+.||+|+.+.|.++..+ .+|+ ||.|+++++|.+||..+||..+.|+.|-|
T Consensus 79 ~~i~nl~~~~~~~~~---~d~f~~~g~ilS~kv~~~~~g-------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSL---YDTFSEFGNILSCKVATDENG-------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCCcccCcHHH---HHHHHhhcCeeEEEEEEcCCC-------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 999999999999987 599999999999999988765 4677 99999999999999999999999999877
Q ss_pred Ee
Q 001925 192 CF 193 (995)
Q Consensus 192 Sf 193 (995)
..
T Consensus 148 g~ 149 (369)
T KOG0123|consen 148 GL 149 (369)
T ss_pred ee
Confidence 53
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.11 E-value=2.6e-06 Score=92.63 Aligned_cols=71 Identities=27% Similarity=0.504 Sum_probs=65.0
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.+||+|||.+..+.+| +.+|.|||||+...|.|+ ++||-.+++..|++||+.|+|..|+|..|+
T Consensus 4 KLFIGNLp~~~~~~el---r~lFe~ygkVlECDIvKN-------------YgFVHiEdktaaedairNLhgYtLhg~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQEL---RSLFEQYGKVLECDIVKN-------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNIN 67 (346)
T ss_pred chhccCCCcccchHHH---HHHHHhhCceEeeeeecc-------------cceEEeecccccHHHHhhcccceecceEEE
Confidence 5899999999988886 379999999999999864 579999999999999999999999999999
Q ss_pred EEeccCC
Q 001925 191 ACFGTTK 197 (995)
Q Consensus 191 ASfGTTK 197 (995)
|.=.+.|
T Consensus 68 VeaSksK 74 (346)
T KOG0109|consen 68 VEASKSK 74 (346)
T ss_pred EEecccc
Confidence 9988888
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.05 E-value=7.6e-06 Score=90.58 Aligned_cols=74 Identities=23% Similarity=0.537 Sum_probs=63.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH-hCCCCCCCeE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS-VHSYILDGRP 188 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqa-LNG~~LdGRv 188 (995)
.++||+||...+.+.+| ++.|-|||.|..|++... .+.|||+|.+.+.|++|... .|-..++|+.
T Consensus 229 ~tLyIg~l~d~v~e~dI---rdhFyqyGeirsi~~~~~-----------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDI---RDHFYQYGEIRSIRILPR-----------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred eEEEecccccchhHHHH---HHHHhhcCCeeeEEeecc-----------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 47999999999988887 399999999999999743 23699999999999999875 4545679999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|++-||.+|
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999994
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1e-05 Score=90.61 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=63.4
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.+||+ +.++++.| +++|.++|+|+.|.|-++. + +-|+|||.|.+++||++||..+|...+.|+.||
T Consensus 3 sl~vg---~~v~e~~l---~~~f~~~~~v~s~rvc~d~-t-------slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~r 68 (369)
T KOG0123|consen 3 SLYVG---PDVTEAML---FDKFSPAGPVLSIRVCRDA-T-------SLGYAYVNFQQPADAERALDTMNFDVLKGKPIR 68 (369)
T ss_pred ceecC---CcCChHHH---HHHhcccCCceeEEEeecC-C-------ccceEEEecCCHHHHHHHHHHcCCcccCCcEEE
Confidence 47888 77777766 4999999999999999886 4 367899999999999999999999999999999
Q ss_pred EEeccC
Q 001925 191 ACFGTT 196 (995)
Q Consensus 191 ASfGTT 196 (995)
+-|.--
T Consensus 69 im~s~r 74 (369)
T KOG0123|consen 69 IMWSQR 74 (369)
T ss_pred eehhcc
Confidence 987644
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.02 E-value=8.6e-06 Score=96.05 Aligned_cols=111 Identities=17% Similarity=0.296 Sum_probs=88.6
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
-|...|||+||++++.++.|| ..||.||+|..|.|..-+.-- .....+-.+||-|-+..||++|+..|+|..+.+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll---~tfGrfgPlasvKimwpRtEe--Ek~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLL---RTFGRFGPLASVKIMWPRTEE--EKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CcccceeeecCCccccHHHHH---HHhcccCcccceeeecccchh--hhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 356678999999999999988 699999999999997432110 001245578999999999999999999999999
Q ss_pred eEEEEEec-------cCCcccccccCCCCCCCCCcccccCCCC
Q 001925 187 RPLRACFG-------TTKYCHAWIRNMPCSVPDCLYLHDFGSQ 222 (995)
Q Consensus 187 RvLRASfG-------TTKYCs~FLRn~~C~NpdCmYLHE~g~e 222 (995)
+.+|.-|| +++|----+-...-+.+.|..-|+-...
T Consensus 247 ~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 247 YEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred eeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCC
Confidence 99999999 5677776666667777788877765544
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.97 E-value=7.5e-06 Score=89.14 Aligned_cols=83 Identities=16% Similarity=0.350 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+++|+||.++....|| ++.|.+||.|+...|.++ ++||.|...|||..||+.|||.+++|+.
T Consensus 78 stkl~vgNis~tctn~El---Ra~fe~ygpviecdivkd-------------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQEL---RAKFEKYGPVIECDIVKD-------------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ccccccCCCCccccCHHH---hhhhcccCCceeeeeecc-------------eeEEEEeeccchHHHHhcccccccccce
Confidence 456899999999999997 389999999999988753 6899999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCC
Q 001925 189 LRACFGTTKYCHAWIRNMP 207 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~ 207 (995)
|+|...|.+--..---+-+
T Consensus 142 m~vq~stsrlrtapgmgDq 160 (346)
T KOG0109|consen 142 MHVQLSTSRLRTAPGMGDQ 160 (346)
T ss_pred eeeeeeccccccCCCCCCH
Confidence 9999999986665444433
No 73
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.4e-05 Score=88.73 Aligned_cols=94 Identities=18% Similarity=0.352 Sum_probs=79.3
Q ss_pred CcCcCCCCCcccc-cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 001925 95 SEGRMHLTNVRVI-QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 173 (995)
Q Consensus 95 se~RK~LanVRVI-QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~ 173 (995)
.+.--+|...-|. -.|.+||.-|++-.++||| .-+|+.||+|+...|.++..+. ..-.+|||.|+++|+.+
T Consensus 224 LEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDL---eiIFSrFG~i~sceVIRD~ktg-----dsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 224 LEMVGDLPDADVKPPENVLFVCKLNPVTTDEDL---EIIFSRFGKIVSCEVIRDRKTG-----DSLQYAFIEFENKESCE 295 (479)
T ss_pred HHHhcCCcccccCCCcceEEEEecCCcccccch---hhHHhhcccceeeeEEeccccc-----chhheeeeeecchhhHH
Confidence 3444556555544 4799999999999999997 3699999999999999988653 34568999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEEeccC
Q 001925 174 RCIQSVHSYILDGRPLRACFGTT 196 (995)
Q Consensus 174 rAIqaLNG~~LdGRvLRASfGTT 196 (995)
+|.-.||+..+|.|.|.|.|..+
T Consensus 296 ~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 296 QAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred HHHhhhcceeeccceEEeehhhh
Confidence 99999999999999999999755
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.89 E-value=3.4e-05 Score=85.54 Aligned_cols=61 Identities=30% Similarity=0.517 Sum_probs=54.2
Q ss_pred hhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEe--ccCCccc
Q 001925 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACF--GTTKYCH 200 (995)
Q Consensus 131 EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASf--GTTKYCs 200 (995)
+--.+||.|.+|+|.-.+ |-|.|=|+|.+.++|..||+.|+|.+++||+|.|+. |+|||-.
T Consensus 295 eec~K~G~v~~vvv~d~h---------PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 295 EECEKFGQVRKVVVYDRH---------PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred HHHHHhCCcceEEEeccC---------CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeee
Confidence 678899999999997432 457799999999999999999999999999999987 8888876
No 75
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=1.2e-05 Score=92.90 Aligned_cols=89 Identities=18% Similarity=0.391 Sum_probs=74.5
Q ss_pred cCcCCCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHH
Q 001925 96 EGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRC 175 (995)
Q Consensus 96 e~RK~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rA 175 (995)
..|+++......-.-.|+|.+||..|.+++|+ ++||.||+|..|..-+ ..++-+||.|.+..+|++|
T Consensus 62 p~~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~---~~f~~yGeir~ir~t~----------~~~~~~~v~FyDvR~A~~A 128 (549)
T KOG4660|consen 62 PLRPDNPSEKDMNQGTLVVFNLPRSVSNDTLL---RIFGAYGEIREIRETP----------NKRGIVFVEFYDVRDAERA 128 (549)
T ss_pred CCCcCCCCcccCccceEEEEecCCcCCHHHHH---HHHHhhcchhhhhccc----------ccCceEEEEEeehHhHHHH
Confidence 34556777766666778999999999999987 7999999999976533 3457799999999999999
Q ss_pred HHHhCCCCCCCeEEEEEeccCC
Q 001925 176 IQSVHSYILDGRPLRACFGTTK 197 (995)
Q Consensus 176 IqaLNG~~LdGRvLRASfGTTK 197 (995)
+++|++..+.|+.|++..|++.
T Consensus 129 lk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 129 LKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred HHHHHHHHhhhhhhcCCCcccc
Confidence 9999999999999996666654
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.78 E-value=6.5e-05 Score=83.43 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=74.7
Q ss_pred CCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 001925 102 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAI 173 (995)
Q Consensus 102 anVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIi--------KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~ 173 (995)
.++--.+...|||.|||..++.+|++ ++|+++|-|. +|.+.++..|. ..|-|-|+|-+.|...
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~---~~~sKcGiI~~d~~t~epk~KlYrd~~G~------lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFA---EVMSKCGIIMRDPQTGEPKVKLYRDNQGK------LKGDALCCYIKRESVE 197 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHH---HHHHhcceEeccCCCCCeeEEEEecCCCC------ccCceEEEeecccHHH
Confidence 44445556669999999999999997 8999999997 47777776542 5678999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEEeccCCcc
Q 001925 174 RCIQSVHSYILDGRPLRACFGTTKYC 199 (995)
Q Consensus 174 rAIqaLNG~~LdGRvLRASfGTTKYC 199 (995)
.||+.||+..+-|+.|||.-|.-.+-
T Consensus 198 LA~~ilDe~~~rg~~~rVerAkfq~K 223 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAKFQMK 223 (382)
T ss_pred HHHHHhCcccccCcEEEEehhhhhhc
Confidence 99999999999999999997765443
No 77
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=4.6e-05 Score=85.00 Aligned_cols=75 Identities=24% Similarity=0.483 Sum_probs=68.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
|.|||.-+-+.+.++||- ..|.-||+|++..+-+.+.++ ..+|++||+|.+...-..||..||=+.|.|+.|
T Consensus 211 nRiYVaSvHpDLSe~DiK---SVFEAFG~I~~C~LAr~pt~~-----~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIK---SVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred heEEeeecCCCccHHHHH---HHHHhhcceeeEEeeccCCCC-----CccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 889999999999999973 799999999999999887654 457899999999999999999999999999999
Q ss_pred EEE
Q 001925 190 RAC 192 (995)
Q Consensus 190 RAS 192 (995)
||-
T Consensus 283 RVG 285 (544)
T KOG0124|consen 283 RVG 285 (544)
T ss_pred ecc
Confidence 986
No 78
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.65 E-value=6.3e-05 Score=87.11 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=63.0
Q ss_pred hhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccC-CcccccccCCCCC
Q 001925 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT-KYCHAWIRNMPCS 209 (995)
Q Consensus 131 EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTT-KYCs~FLRn~~C~ 209 (995)
|--++||+|..|.|.+.- -|++||.|.+.+.|..|+.+|||.++.||.|+|.|=+. .|=+-|..-.
T Consensus 472 Eec~k~g~v~hi~vd~ns----------~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~~--- 538 (549)
T KOG0147|consen 472 EECGKHGKVCHIFVDKNS----------AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDSK--- 538 (549)
T ss_pred HHHHhcCCeeEEEEccCC----------CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCcc---
Confidence 666999999999997542 37899999999999999999999999999999999766 7777776433
Q ss_pred CCCCcccccC
Q 001925 210 VPDCLYLHDF 219 (995)
Q Consensus 210 NpdCmYLHE~ 219 (995)
..|+|+|-.
T Consensus 539 -~~~~~~~~~ 547 (549)
T KOG0147|consen 539 -AAPLLFHTN 547 (549)
T ss_pred -cceeeeecc
Confidence 478888753
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.63 E-value=3.9e-05 Score=90.75 Aligned_cols=79 Identities=14% Similarity=0.302 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-+.|.|.|||+..+.+++- ++|+.||.|..|.|++.. +.. ..+|++||+|-++.||.+|+.++.++.|.||.
T Consensus 613 ~tKIlVRNipFeAt~rEVr---~LF~aFGqlksvRlPKK~-~k~----a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVR---KLFTAFGQLKSVRLPKKI-GKG----AHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccchHHHHHHHH---HHHhcccceeeeccchhh-cch----hhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 3679999999999999984 899999999999998762 211 24789999999999999999999999999999
Q ss_pred EEEEecc
Q 001925 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|...|+.
T Consensus 685 LVLEwA~ 691 (725)
T KOG0110|consen 685 LVLEWAK 691 (725)
T ss_pred hheehhc
Confidence 9887664
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.62 E-value=3.8e-05 Score=84.59 Aligned_cols=75 Identities=23% Similarity=0.448 Sum_probs=59.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...+||+||++.+.+|.| .+||++||+|.+.+|.+++.. .++++++||+|++.+.-.+++..- -..||||.
T Consensus 6 ~~KlfiGgisw~ttee~L---r~yf~~~Gev~d~~vm~d~~t-----~rsrgFgfv~f~~~~~v~~vl~~~-~h~~dgr~ 76 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESL---REYFSQFGEVTDCVVMRDPST-----GRSRGFGFVTFATPEGVDAVLNAR-THKLDGRS 76 (311)
T ss_pred CcceeecCcCccccHHHH---HHHhcccCceeeEEEeccCCC-----CCcccccceecCCCcchheeeccc-ccccCCcc
Confidence 456899999999987775 399999999999999998764 367999999999988776666542 24677777
Q ss_pred EEEE
Q 001925 189 LRAC 192 (995)
Q Consensus 189 LRAS 192 (995)
|-+-
T Consensus 77 ve~k 80 (311)
T KOG4205|consen 77 VEPK 80 (311)
T ss_pred ccce
Confidence 6543
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.53 E-value=3.3e-05 Score=81.75 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=63.4
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+|||.+|-..++ |||| .|+|-|-|.|+||.|...+... ++ ||||.|.++-...-||+.+||..+.|+.|+
T Consensus 11 tl~v~n~~~~v~-eelL--~ElfiqaGPV~kv~ip~~~d~~------~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 11 TLLVQNMYSGVS-EELL--SELFIQAGPVYKVGIPSGQDQE------QK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred HHHHHhhhhhhh-HHHH--HHHhhccCceEEEeCCCCccCC------Cc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 479999999984 5666 5999999999999998776542 34 899999999999999999999999999999
Q ss_pred EEe
Q 001925 191 ACF 193 (995)
Q Consensus 191 ASf 193 (995)
+.+
T Consensus 81 ~~~ 83 (267)
T KOG4454|consen 81 RTL 83 (267)
T ss_pred ccc
Confidence 764
No 82
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.48 E-value=5.2e-05 Score=81.44 Aligned_cols=81 Identities=21% Similarity=0.479 Sum_probs=68.0
Q ss_pred hhc-CCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccC-----CcccccccC
Q 001925 132 YFG-QYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT-----KYCHAWIRN 205 (995)
Q Consensus 132 yFG-QYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTT-----KYCs~FLRn 205 (995)
.|. +||.|.+++|-.+-.- .-.|-|||.|..+|+|++|++.|||.++.|++|.|.|..- .-|..|-++
T Consensus 88 E~~~kygEiee~~Vc~Nl~~------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~ 161 (260)
T KOG2202|consen 88 ELEDKYGEIEELNVCDNLGD------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT 161 (260)
T ss_pred HHHHHhhhhhhhhhhcccch------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc
Confidence 344 9999999988654321 2357799999999999999999999999999999998743 568889998
Q ss_pred CCCCC-CCCcccccC
Q 001925 206 MPCSV-PDCLYLHDF 219 (995)
Q Consensus 206 ~~C~N-pdCmYLHE~ 219 (995)
.|.- ..|.|+|=.
T Consensus 162 -~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 162 -ECSRGGACNFMHVK 175 (260)
T ss_pred -cCCCCCcCcchhhh
Confidence 8888 799999977
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=7.6e-05 Score=78.79 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=64.1
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|||+.||+...++++- ++|-.||+|..|.|. .+++||.|.+..||.+||..+||.+|.|-.+.
T Consensus 3 rv~vg~~~~~~~~~d~E---~~f~~yg~~~d~~mk-------------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVE---RFFKGYGKIPDADMK-------------NGFGFVEFEDPRDADDAVHDLDGKELCGERLV 66 (216)
T ss_pred ceeecccCCccchhHHH---HHHhhccccccceee-------------cccceeccCchhhhhcccchhcCceecceeee
Confidence 48999999999999985 899999999999884 24679999999999999999999999998899
Q ss_pred EEeccCC
Q 001925 191 ACFGTTK 197 (995)
Q Consensus 191 ASfGTTK 197 (995)
+.|++-+
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9998854
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.48 E-value=0.00015 Score=80.14 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=68.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||+.+.++++ .+||.|||+|..+++..++... .+++++||+|.+++... -+....-..+.|+.+
T Consensus 98 kkiFvGG~~~~~~e~~~---r~yfe~~g~v~~~~~~~d~~~~-----~~rgFgfv~~~~e~sVd-kv~~~~f~~~~gk~v 168 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDF---KDYFEQFGKVADVVIMYDKTTS-----RPRGFGFVTFDSEDSVD-KVTLQKFHDFNGKKV 168 (311)
T ss_pred eEEEecCcCCCCchHHH---hhhhhccceeEeeEEeeccccc-----ccccceeeEeccccccc-eecccceeeecCcee
Confidence 46899999999987775 3999999999999999887643 46899999999965544 455567788999999
Q ss_pred EEEeccCCcccccc
Q 001925 190 RACFGTTKYCHAWI 203 (995)
Q Consensus 190 RASfGTTKYCs~FL 203 (995)
.|--+..|--....
T Consensus 169 evkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 169 EVKRAIPKEVMQST 182 (311)
T ss_pred eEeeccchhhcccc
Confidence 99888877666544
No 85
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.38 E-value=0.00067 Score=63.28 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=49.0
Q ss_pred CEEEEeCCCCCCChHHHHHh-HhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 110 NLVYIIGLPINLADEDLLQR-KEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk-~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
.+|||.|||.......+-.+ ..++.-+| ||+.|. ++.|+|.|.++|.|.+|.+-|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------GGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------CCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 58999999999866555222 57888875 666652 35799999999999999999999999999
Q ss_pred EEEEEeccC
Q 001925 188 PLRACFGTT 196 (995)
Q Consensus 188 vLRASfGTT 196 (995)
.|.|+|..-
T Consensus 68 kI~v~~~~~ 76 (90)
T PF11608_consen 68 KISVSFSPK 76 (90)
T ss_dssp --EEESS--
T ss_pred eEEEEEcCC
Confidence 999998643
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.29 E-value=0.00064 Score=77.15 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=80.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+|.|.+|.+..-..|.| .-+||-||.|.+|.|..++. -.|-|.|.+...|.-|+.+|+|..+.|+.
T Consensus 297 n~vllvsnln~~~VT~d~L--ftlFgvYGdVqRVkil~nkk----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVL--FTLFGVYGDVQRVKILYNKK----------DNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHH--HHHHhhhcceEEEEeeecCC----------cceeeeecchhHHHHHHHHhhcceecCce
Confidence 6788999998875566666 58999999999999987653 35999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001925 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|||.|.... .. -|-.-|.++.-+||+...+-.+|
T Consensus 365 lrvt~SKH~---------~v------qlp~egq~d~glT~dy~~spLhr 398 (492)
T KOG1190|consen 365 LRVTLSKHT---------NV------QLPREGQEDQGLTKDYGNSPLHR 398 (492)
T ss_pred EEEeeccCc---------cc------cCCCCCCccccccccCCCCchhh
Confidence 999986432 11 12234555556788877766666
No 87
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.28 E-value=0.00013 Score=59.62 Aligned_cols=48 Identities=31% Similarity=0.854 Sum_probs=37.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
|+..|++|.+.. .|..+.| ||+. +|..|+.+++. ...+||-||+++.+
T Consensus 1 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLP--CGHLCFCEECAERLLK------RKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEET--TCEEEEEHHHHHHHHH------TTSBBTTTTBB-SE
T ss_pred CcCCCccCCccC--CceEEeC--CCChHHHHHHhHHhcc------cCCCCCcCChhhcC
Confidence 467899999985 4555665 6999 99999999974 57899999998753
No 88
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.25 E-value=0.0005 Score=78.41 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=60.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-..|+|.|||..++-.- || +-|-.||.|+.+.|.-.-. .++ -|.|.++|+|++|+..|||..|+||.
T Consensus 536 a~qIiirNlP~dfTWqm-lr--DKfre~G~v~yadime~Gk--------skG--VVrF~s~edAEra~a~Mngs~l~Gr~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQM-LR--DKFREIGHVLYADIMENGK--------SKG--VVRFFSPEDAERACALMNGSRLDGRN 602 (608)
T ss_pred ccEEEEecCCccccHHH-HH--HHHHhccceehhhhhccCC--------ccc--eEEecCHHHHHHHHHHhccCcccCce
Confidence 46699999999997654 54 9999999999988842211 223 79999999999999999999999999
Q ss_pred EEEEe
Q 001925 189 LRACF 193 (995)
Q Consensus 189 LRASf 193 (995)
|+|.|
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99987
No 89
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.22 E-value=0.00056 Score=72.72 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
--.|||+++-+..+.+++ .+.|.-+|.|..|.|..++... .++++|||.|.+.+.++.|++ |||..+.|+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~---e~hf~~Cg~i~~~ti~~d~~~~-----~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKI---ELHFESCGGINRVTVPKDKFRG-----HPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred CceEEEeccccccccchh---hheeeccCCccceeeeccccCC-----CcceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 456899999999988885 4899999999998888777543 368999999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 001925 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
+.+++-.|.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999988877
No 90
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.12 E-value=0.00087 Score=76.74 Aligned_cols=80 Identities=19% Similarity=0.395 Sum_probs=65.0
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 191 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRA 191 (995)
|||.+||.+++..+| .+.|-+||.|++..|.....+. ..+ +++||+|.+.+++..||++- =..++||.|.|
T Consensus 291 i~V~nlP~da~~~~l---~~~Fk~FG~Ik~~~I~vr~~~~----~~~-~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 291 IFVKNLPPDATPAEL---EEVFKQFGPIKEGGIQVRSPGG----KNP-CFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred eEeecCCCCCCHHHH---HHHHhhcccccccceEEeccCC----CcC-ceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 999999999987774 4999999999999997544211 134 89999999999999999987 56789999999
Q ss_pred EeccCCccc
Q 001925 192 CFGTTKYCH 200 (995)
Q Consensus 192 SfGTTKYCs 200 (995)
.--.+.|--
T Consensus 362 eek~~~~~g 370 (419)
T KOG0116|consen 362 EEKRPGFRG 370 (419)
T ss_pred Eeccccccc
Confidence 866655443
No 91
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.00096 Score=72.64 Aligned_cols=95 Identities=22% Similarity=0.416 Sum_probs=73.8
Q ss_pred cCCCCCcCcCCCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCH
Q 001925 90 AKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSRE 169 (995)
Q Consensus 90 ~K~k~se~RK~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrk 169 (995)
.|..++|+|-- ....+||+=|...-.+||++ .+|..||.|..+.+.+...+ ..+|.|||.|.+.
T Consensus 7 vkpadsesrg~-------~drklfvgml~kqq~e~dvr---rlf~pfG~~~e~tvlrg~dg------~sKGCAFVKf~s~ 70 (371)
T KOG0146|consen 7 VKPADSESRGG-------DDRKLFVGMLNKQQSEDDVR---RLFQPFGNIEECTVLRGPDG------NSKGCAFVKFSSH 70 (371)
T ss_pred ccccccccCCc-------cchhhhhhhhcccccHHHHH---HHhcccCCcceeEEecCCCC------CCCCceEEEeccc
Confidence 34555555532 23346888888888899986 59999999999999987765 3578899999999
Q ss_pred HHHHHHHHHhCCCC-CCC--eEEEEEeccCCccc
Q 001925 170 DDAIRCIQSVHSYI-LDG--RPLRACFGTTKYCH 200 (995)
Q Consensus 170 EDA~rAIqaLNG~~-LdG--RvLRASfGTTKYCs 200 (995)
.||..||.+|+|.. +-| ..|.|-|+-|..=.
T Consensus 71 ~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 71 AEAQAAINALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred hHHHHHHHHhcccccCCCCccceEEEeccchHHH
Confidence 99999999999975 455 56888888874443
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00057 Score=76.30 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=85.0
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001925 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIi--------KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
+.++.+|||-+||..++..++. ++|.|-|.|. +|.|.+++++. .+.+-|=|+|++.--|+.||.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~---~~f~qcg~ikrnK~t~kPki~~y~dkeT~-----~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNA---DFFLQCGVIKRNKRTGKPKIKIYTDKETG-----APKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred ccccccceeeccCccchHHHHH---HHHhhcceeccCCCCCCcchhcccccccc-----CcCCceeeeecChhhhhhhhh
Confidence 8889999999999999888875 8999999996 46666665442 468889999999999999999
Q ss_pred HhCCCCCCCeEEEEEeccCCcccccccCCCCCC
Q 001925 178 SVHSYILDGRPLRACFGTTKYCHAWIRNMPCSV 210 (995)
Q Consensus 178 aLNG~~LdGRvLRASfGTTKYCs~FLRn~~C~N 210 (995)
-.++..+.|.+|+|++++-+--..|.|+..|.+
T Consensus 135 ~~agkdf~gn~ikvs~a~~r~~ve~~rg~~~~~ 167 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAERRTGVESVRGGYPND 167 (351)
T ss_pred hhccccccCCCchhhhhhhccCcccccccccCc
Confidence 999999999999999999888889999999765
No 93
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.01 E-value=0.0017 Score=74.23 Aligned_cols=78 Identities=21% Similarity=0.447 Sum_probs=66.3
Q ss_pred cccCCE-EEEeCCCCCCChHHHHHhHhhh-cCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001925 106 VIQRNL-VYIIGLPINLADEDLLQRKEYF-GQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 106 VIQKNL-VYVvGLP~~IAeEDLLRk~EyF-GQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
|-.++. |||.|||+.+.-.+| | ++| .+-|.|.-|.+.-+..+. +++.|-|+|.++|.+++|++.||-+.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdL-K--dLvrekvGev~yveLl~D~~GK------~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDL-K--DLVREKVGEVEYVELLFDESGK------ARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccccceEEEecCcchhhhHhH-H--HHHHHhcCceEeeeeecccCCC------cCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 444555 999999999987775 2 555 468999999999888763 68899999999999999999999999
Q ss_pred CCCeEEEEE
Q 001925 184 LDGRPLRAC 192 (995)
Q Consensus 184 LdGRvLRAS 192 (995)
+.||.|+|-
T Consensus 111 ~~GR~l~vK 119 (608)
T KOG4212|consen 111 VNGRELVVK 119 (608)
T ss_pred ccCceEEEe
Confidence 999999874
No 94
>PLN02189 cellulose synthase
Probab=97.00 E-value=0.00033 Score=86.64 Aligned_cols=51 Identities=27% Similarity=0.892 Sum_probs=43.9
Q ss_pred CCCCCcccCCC--ccCCCccccC-CCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 7 KTCPLCAEEMD--LTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~EelD--~TD~~F~PC~-CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+.|.+|-++++ .+...|..|. |||.+|+.||...+ .+.+..||.|++.|..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer-----~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER-----REGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchhh
Confidence 48999999986 5556889997 99999999998775 4688999999999983
No 95
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.0012 Score=73.05 Aligned_cols=55 Identities=24% Similarity=0.622 Sum_probs=41.2
Q ss_pred CCCCCCcccCC-CccCCC-ccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001925 6 EKTCPLCAEEM-DLTDQQ-LKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 6 d~~CPLC~Eel-D~TD~~-F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+..||+|...- .-.+.. +.- +||+.+|.-|..+|.. ...+.||.|++++....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~-----~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFV-----RGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhc-----CCCCCCCCCCCccchhhcc
Confidence 46899999853 223333 444 9999999999999963 2457999999998887653
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.94 E-value=0.0029 Score=67.70 Aligned_cols=80 Identities=15% Similarity=0.340 Sum_probs=58.6
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC---C
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD---G 186 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld---G 186 (995)
+++||.|||..+...|| |-+|-.|---..-.+..+..+. .++ +..|||||.+..+|..|+.+|||..+| |
T Consensus 35 RTLFVSGLP~DvKpREi---ynLFR~f~GYEgslLK~Tsk~~---~~~-~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREI---YNLFRRFHGYEGSLLKYTSKGD---QVC-KPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ceeeeccCCcccCHHHH---HHHhccCCCccceeeeeccCCC---ccc-cceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 45899999999999998 4677766433333332221110 112 357999999999999999999999886 7
Q ss_pred eEEEEEeccC
Q 001925 187 RPLRACFGTT 196 (995)
Q Consensus 187 RvLRASfGTT 196 (995)
.+|++.++..
T Consensus 108 stLhiElAKS 117 (284)
T KOG1457|consen 108 STLHIELAKS 117 (284)
T ss_pred ceeEeeehhc
Confidence 8899998765
No 97
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.90 E-value=0.00026 Score=56.37 Aligned_cols=44 Identities=27% Similarity=0.733 Sum_probs=34.3
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACR 57 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACR 57 (995)
.+||||+|+|+. +......+||+.+|.-|+...++. +..||-||
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHH------SSB-TTTH
T ss_pred CCCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHh------CCcCCccC
Confidence 379999999975 555667779999999998887642 46999998
No 98
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.88 E-value=0.0011 Score=73.00 Aligned_cols=60 Identities=27% Similarity=0.529 Sum_probs=50.5
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEe
Q 001925 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACF 193 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASf 193 (995)
.+-.++||+|.+|+|--...- .. .....+||.|++.|+|.+|+-.|||..+.||+++|+|
T Consensus 304 keEceKyg~V~~viifeip~~---p~-deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQ---PE-DEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHhhcceeeEEEEecCCC---cc-chhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 488999999999999755321 11 2346789999999999999999999999999999987
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.0024 Score=74.57 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=51.5
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEe
Q 001925 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACF 193 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASf 193 (995)
+.-+++||.|.+|.|++...... .. -..|.+||.|.+.|++++|.++|.|..+.||++.++|
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~-~~-~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDEN-PV-PGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCC-cC-CCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 46799999999999998732211 11 2467899999999999999999999999999999886
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.79 E-value=0.0022 Score=53.98 Aligned_cols=52 Identities=25% Similarity=0.645 Sum_probs=42.0
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
.-|=|.|.++... +++| ++|.+||+|.++.+... +-.+||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl---~~F~~fGeI~~~~~~~~-----------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVL---EHFASFGEIVDIYVPES-----------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHH---HHHHhcCCEEEEEcCCC-----------CcEEEEEECCHHHHHhhC
Confidence 3577999998864 4566 69999999999988621 236899999999999984
No 101
>PLN02436 cellulose synthase A
Probab=96.68 E-value=0.00084 Score=83.31 Aligned_cols=51 Identities=27% Similarity=0.884 Sum_probs=43.5
Q ss_pred CCCCCcccCC--CccCCCccccC-CCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 7 KTCPLCAEEM--DLTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~Eel--D~TD~~F~PC~-CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
.+|.+|-+++ +.+-..|..|. |||.+|+.||...+ .+.+..||.|++.|..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer-----~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKTRYKR 90 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchhh
Confidence 4999999998 44556799995 99999999998775 4688899999999983
No 102
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.61 E-value=0.002 Score=48.79 Aligned_cols=44 Identities=32% Similarity=0.828 Sum_probs=33.4
Q ss_pred CCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccc
Q 001925 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTA 59 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrp 59 (995)
.|++|.+.+ . ..+..-+||+.+|.-|+....+. ...+||.||++
T Consensus 1 ~C~iC~~~~--~-~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--R-EPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--h-CceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence 599999998 2 22333359999999999988642 46789999985
No 103
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.60 E-value=0.0019 Score=67.57 Aligned_cols=60 Identities=18% Similarity=0.553 Sum_probs=42.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhh----------ccCCCCCCccccccccccchhcc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAE----------KDGTEGRCPACRTAYDKEKIVGM 68 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~ae----------k~~~~grCPACRrpYdee~I~~~ 68 (995)
++.+||||.+.+ +|... -+||+..|+-|..+.+.... ......+||-||+++....+..+
T Consensus 17 ~~~~CpICld~~--~dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 17 GDFDCNICLDQV--RDPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CccCCccCCCcC--CCcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 457999999987 45544 36999999999887653210 01235789999999988776533
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.0034 Score=59.52 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=49.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEE-EeecCCCCc-ccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVS-ISRTATGDI-QHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIv-Inrd~~g~~-q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
..-|.|-|.|+..+ ..+| ++|++||.|++.. +.++..+.. .+.+..+.-..|+|+++.+|.+|++ -||..+.|
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl---~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVL---RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGH-HHHH---HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CeEEEEEccCHHHH-HHHH---HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 45689999999964 4677 7999999999876 222111100 0122345578999999999999998 59999988
Q ss_pred eEE
Q 001925 187 RPL 189 (995)
Q Consensus 187 RvL 189 (995)
..|
T Consensus 81 ~~m 83 (100)
T PF05172_consen 81 SLM 83 (100)
T ss_dssp CEE
T ss_pred cEE
Confidence 655
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0043 Score=72.84 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=60.9
Q ss_pred CCEEEEeCCCCCC-ChHHHHHh--HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 109 RNLVYIIGLPINL-ADEDLLQR--KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 109 KNLVYVvGLP~~I-AeEDLLRk--~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.+.|+|-|+|--- +.-+.||. ..+|++||+|++++++.+..+. ..|++|+.|.+..+|..|++.+||..||
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg------tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG------TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC------eeeEEEEEecChhhHHHHHHhcccceec
Confidence 4667888887642 22344553 7899999999999999777653 4689999999999999999999999987
Q ss_pred C-eEEEEE
Q 001925 186 G-RPLRAC 192 (995)
Q Consensus 186 G-RvLRAS 192 (995)
- ..+.|.
T Consensus 132 knHtf~v~ 139 (698)
T KOG2314|consen 132 KNHTFFVR 139 (698)
T ss_pred ccceEEee
Confidence 4 445544
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.44 E-value=0.0068 Score=57.46 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~ 182 (995)
+|+|.|+...+..++| ++.|.+||.|.-|.+.+.. -.|||.|.+.+.|.+|+..+.-.
T Consensus 3 il~~~g~~~~~~re~i---K~~f~~~g~V~yVD~~~G~-----------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDI---KEAFSQFGEVAYVDFSRGD-----------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHH---HHHT-SS--EEEEE--TT------------SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHH---HHHHHhcCCcceEEecCCC-----------CEEEEEECCcchHHHHHHHHHhc
Confidence 6899999999987776 4999999999998886432 26899999999999999987655
No 107
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.33 E-value=0.0032 Score=67.56 Aligned_cols=51 Identities=25% Similarity=0.598 Sum_probs=38.4
Q ss_pred cCCCCCCcccCCCccCC----CccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQ----QLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~----~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
++.+||+|+|++..... --...+||+..|.-|...-++ ....||-||+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~------~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK------EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh------cCCCCCCCCCEee
Confidence 46899999999753321 124568999999999877653 4678999999765
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.13 E-value=0.041 Score=52.15 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=64.9
Q ss_pred CCEEEEeCCCCCCChHHHHHh-HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC--
Q 001925 109 RNLVYIIGLPINLADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-- 185 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk-~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-- 185 (995)
|.+|=|.|||.+++.++|+.- .+.| .|+.-=+.++.|.... .+.|+|||.|.+.+.|.+=.+..+|..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~-----~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNK-----CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCC-----CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 578999999999999987642 2333 4777778887776432 57899999999999999999999999885
Q ss_pred --CeEEEEEeccCC
Q 001925 186 --GRPLRACFGTTK 197 (995)
Q Consensus 186 --GRvLRASfGTTK 197 (995)
.++..++||+..
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 567778887754
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.80 E-value=0.053 Score=63.23 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=61.3
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|-+.|||++.+++||| ++|+.- +|..++++++.. .+++-|||+|.++||+.+|++. |-..+.-|.|-
T Consensus 12 ~vr~rGLPwsat~~ei~---~Ff~~~-~I~~~~~~r~~G-------r~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIE 79 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEIL---DFFSNC-GIENLEIPRRNG-------RPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIE 79 (510)
T ss_pred EEEecCCCccccHHHHH---HHHhcC-ceeEEEEeccCC-------CcCcceEEEeechHHHHHHHHh-hHHHhCCceEE
Confidence 45678999999999997 899998 588888887643 2578899999999999999984 55667778887
Q ss_pred EEeccCCccc
Q 001925 191 ACFGTTKYCH 200 (995)
Q Consensus 191 ASfGTTKYCs 200 (995)
|-=++.+--.
T Consensus 80 Vf~~~~~e~d 89 (510)
T KOG4211|consen 80 VFTAGGAEAD 89 (510)
T ss_pred EEccCCcccc
Confidence 7655444333
No 110
>PLN02248 cellulose synthase-like protein
Probab=95.53 E-value=0.011 Score=74.06 Aligned_cols=51 Identities=31% Similarity=0.924 Sum_probs=38.2
Q ss_pred CCC--CCcccCCC--ccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 7 KTC--PLCAEEMD--LTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 7 ~~C--PLC~EelD--~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
..| +-|-.+.. ..-....||.|+|.||+-||-.-+. ..|.||+|+.+|...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 125 SSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVK------SGGICPGCKEPYKVT 179 (1135)
T ss_pred CcccccCcccccccccccccCCcccccchhHHhHhhhhhh------cCCCCCCCccccccc
Confidence 456 55666552 3335689999999999999976642 389999999999543
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.42 E-value=0.0087 Score=65.55 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=70.4
Q ss_pred CEEE-EeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 110 NLVY-IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 110 NLVY-VvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-++| |++|+..+.+++| +++|+..|.|+.|.+...+.+ ....++|||.|....++..|+.. ....++|+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~---~~~~~~~~~i~~~r~~~~~~s-----~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDL---KEHFVSSGEITSVRLPTDEES-----GDSKGFAYVDFSAGNSKKLALND-QTRSIGGRP 255 (285)
T ss_pred ccceeecccccccchHHH---hhhccCcCcceeeccCCCCCc-----cchhhhhhhhhhhchhHHHHhhc-ccCcccCcc
Confidence 3466 9999999988776 389999999999999866543 24678999999999999999999 899999999
Q ss_pred EEEEeccCC---cccccc
Q 001925 189 LRACFGTTK---YCHAWI 203 (995)
Q Consensus 189 LRASfGTTK---YCs~FL 203 (995)
+++.++.-. +|.-|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (285)
T KOG4210|consen 256 LRLEEDEPRPKSDGGLFG 273 (285)
T ss_pred cccccCCCCccccccccc
Confidence 999998764 444443
No 112
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0075 Score=59.71 Aligned_cols=48 Identities=31% Similarity=0.657 Sum_probs=39.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
+++..||+|.+.|... +--+||+-+|..|...+.+ ..-+||.||.++.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~~~~ 58 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE------GPLSCPVCRPPSR 58 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC------CCcCCcccCCchh
Confidence 4678999999999765 5567999999999999964 4589999995333
No 113
>PLN02195 cellulose synthase A
Probab=95.41 E-value=0.0094 Score=73.96 Aligned_cols=58 Identities=26% Similarity=0.667 Sum_probs=47.3
Q ss_pred CCcccCCCCCCcccCCCccC--CCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 1 MSDKAEKTCPLCAEEMDLTD--QQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 1 msDe~d~~CPLC~EelD~TD--~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
|-+-..+.|.+|-++++++. ..|.-| .|||.+|+-||..= +.+.+-.||.|...|.++
T Consensus 1 ~~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye-----r~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 1 MMESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE-----IKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred CCcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhh-----hhcCCccCCccCCccccc
Confidence 34455679999999887765 468999 89999999999653 456889999999999943
No 114
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.38 E-value=0.016 Score=48.46 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+-.||+|.+.|+ |.-.. +||+-+|+-|....++ + ++.||-|++++..+.+
T Consensus 1 ~~~Cpi~~~~~~--~Pv~~--~~G~v~~~~~i~~~~~---~---~~~cP~~~~~~~~~~l 50 (63)
T smart00504 1 EFLCPISLEVMK--DPVIL--PSGQTYERRAIEKWLL---S---HGTDPVTGQPLTHEDL 50 (63)
T ss_pred CcCCcCCCCcCC--CCEEC--CCCCEEeHHHHHHHHH---H---CCCCCCCcCCCChhhc
Confidence 357999999985 44443 6799999888888764 2 6899999999866554
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.17 E-value=0.019 Score=65.29 Aligned_cols=83 Identities=20% Similarity=0.391 Sum_probs=64.4
Q ss_pred cCCCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE---EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHH
Q 001925 98 RMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK---VSISRTATGDIQHSANNSCCVYITYSREDDAIR 174 (995)
Q Consensus 98 RK~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK---IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~r 174 (995)
+.+....|+ |+.|-..|||+....|||| ++||.|-+-++ |-|..+..+ .++|-|||.|.+.|+|..
T Consensus 271 ~~~~p~~~~--kdcvRLRGLPy~AtvEdIL---~FlgdFa~~i~f~gVHmv~N~qG------rPSGeAFIqm~nae~a~a 339 (508)
T KOG1365|consen 271 ARLVPPTRS--KDCVRLRGLPYEATVEDIL---DFLGDFATDIRFQGVHMVLNGQG------RPSGEAFIQMRNAERARA 339 (508)
T ss_pred cccCCCCCC--CCeeEecCCChhhhHHHHH---HHHHHHhhhcccceeEEEEcCCC------CcChhhhhhhhhhHHHHH
Confidence 344444444 8999999999999999999 89999987665 445555544 378999999999999999
Q ss_pred HHHHhCCCCCCCeEEEE
Q 001925 175 CIQSVHSYILDGRPLRA 191 (995)
Q Consensus 175 AIqaLNG~~LdGRvLRA 191 (995)
|.+..+.....+|+|.|
T Consensus 340 aaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 340 AAQKCHKKLMKSRYIEV 356 (508)
T ss_pred HHHHHHHhhcccceEEE
Confidence 99999876665554443
No 116
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.09 E-value=0.013 Score=45.94 Aligned_cols=39 Identities=31% Similarity=0.895 Sum_probs=29.8
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
||+|.+.+.. ...--+||+-+|.-||.+.++ . +.+||.|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~-----~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLE-----K-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHH-----C-TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHH-----C-cCCCcCC
Confidence 8999998743 444578999999999999875 2 5899988
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.08 E-value=0.13 Score=58.75 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=63.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...+-|.||-..--+-|.| ..+|-+||.|.+|...+++. +.|-|++.+.++-++||..||+..+.|..
T Consensus 287 g~VmMVyGLdh~k~N~drl--FNl~ClYGNV~rvkFmkTk~----------gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRL--FNLFCLYGNVERVKFMKTKP----------GTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CcEEEEEeccccccchhhh--hhhhhhcCceeeEEEeeccc----------ceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3457889998764444444 48999999999999998764 46899999999999999999999999999
Q ss_pred EEEEeccC
Q 001925 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|.+++..-
T Consensus 355 l~v~~SkQ 362 (494)
T KOG1456|consen 355 LNVCVSKQ 362 (494)
T ss_pred EEEeeccc
Confidence 99887543
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.07 E-value=0.018 Score=67.51 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=70.9
Q ss_pred ccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001925 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 105 RVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
-.++.+.+||+|||..+.+..+. |+.+-||.+....+.++.... .++++||-.|.+.-.+..||..|||..+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~---Ell~~fg~lk~f~lv~d~~~g-----~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVK---ELLDSFGPLKAFRLVKDSATG-----NSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cccccchhhhccCcCccCHHHHH---HHHHhcccchhheeecccccc-----cccceeeeeeeCCcchhhhhcccchhhh
Confidence 35678999999999999877764 888889999887777665432 4688999999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 001925 185 DGRPLRACFGTT 196 (995)
Q Consensus 185 dGRvLRASfGTT 196 (995)
.++.|.|..+--
T Consensus 357 gd~~lvvq~A~~ 368 (500)
T KOG0120|consen 357 GDKKLVVQRAIV 368 (500)
T ss_pred cCceeEeehhhc
Confidence 999999886543
No 119
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.07 E-value=0.022 Score=45.87 Aligned_cols=44 Identities=27% Similarity=0.805 Sum_probs=36.4
Q ss_pred CCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
.|++|.++++ .+..++-=.||+.+|.-|...+. .....||.||+
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhc------CCCCCCcCCCC
Confidence 4999999993 34457778999999999999984 35789999996
No 120
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.019 Score=63.16 Aligned_cols=54 Identities=30% Similarity=0.856 Sum_probs=36.0
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001925 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++.+..|-||+|.+. |... =+||+- |||--|++-..+ ..-||-||......++.
T Consensus 236 ~~a~~kC~LCLe~~~--~pSa--TpCGHi---FCWsCI~~w~~e---k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRS--NPSA--TPCGHI---FCWSCILEWCSE---KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCC--CCCc--CcCcch---HHHHHHHHHHcc---ccCCCcccccCCCccee
Confidence 355689999999982 2222 278998 555556654332 22399999988877664
No 121
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.91 E-value=0.017 Score=62.84 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=57.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCC---------CcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATG---------DIQHSANNSCCVYITYSREDDAIRCIQS 178 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g---------~~q~~~~~rgsAYVTFsrkEDA~rAIqa 178 (995)
....||+.+||+.++..-| ++||++||.|-.|.+-..... .+.. ..---++|.|.++..|.++...
T Consensus 73 k~GVvylS~IPp~m~~~rl---Reil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~--~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRL---REILSQYGEVGRVYLQPEDDSKRAARKRKGGNYK--KLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHH---HHHHHhccccceEEecchhhHHHHHHhhcCCCcc--ccchhHHHHHHHHHHHHHHHHH
Confidence 3478999999999976554 499999999999999643221 1000 0011358999999999999999
Q ss_pred hCCCCCCCeE
Q 001925 179 VHSYILDGRP 188 (995)
Q Consensus 179 LNG~~LdGRv 188 (995)
|||.++.|+.
T Consensus 148 Lnn~~Iggkk 157 (278)
T KOG3152|consen 148 LNNTPIGGKK 157 (278)
T ss_pred hCCCccCCCC
Confidence 9999999964
No 122
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.88 E-value=0.036 Score=63.55 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=54.1
Q ss_pred EeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C-eEEEE
Q 001925 114 IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G-RPLRA 191 (995)
Q Consensus 114 VvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G-RvLRA 191 (995)
|.++-+.++- |+| +.+|++||+|.||+--.. +.++.|-|.|.+.+.|..|-.+|||..+. | ..||+
T Consensus 155 ie~m~ypVsl-DVL--HqvFS~fG~VlKIiTF~K---------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 155 IENMFYPVSL-DVL--HQVFSKFGFVLKIITFTK---------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred eccceeeeEH-HHH--HHHHhhcceeEEEEEEec---------ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 3444444433 677 799999999999997533 24688999999999999999999998764 4 57888
Q ss_pred Eecc
Q 001925 192 CFGT 195 (995)
Q Consensus 192 SfGT 195 (995)
.|..
T Consensus 223 d~Sk 226 (492)
T KOG1190|consen 223 DFSK 226 (492)
T ss_pred ehhh
Confidence 7754
No 123
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.021 Score=59.39 Aligned_cols=52 Identities=21% Similarity=0.738 Sum_probs=41.2
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
--.||+|++.+ +.+.-.-=+||+-+|.-|....+. ....||-||+..+.+.+
T Consensus 131 ~~~CPiCl~~~--sek~~vsTkCGHvFC~~Cik~alk------~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSV--SEKVPVSTKCGHVFCSQCIKDALK------NTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecch--hhccccccccchhHHHHHHHHHHH------hCCCCCCcccccchhhh
Confidence 35799999987 445556779999999999988875 46789999997666554
No 124
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.81 E-value=0.041 Score=63.12 Aligned_cols=52 Identities=23% Similarity=0.671 Sum_probs=39.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+++..||+|.+.|. +-.. =+||+.+|.-|....+. ..+.||.||.++....+
T Consensus 24 e~~l~C~IC~d~~~--~Pvi--tpCgH~FCs~CI~~~l~------~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFD--VPVL--TSCSHTFCSLCIRRCLS------NQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhh--CccC--CCCCCchhHHHHHHHHh------CCCCCCCCCCccccccC
Confidence 34579999999884 2222 37999999999988764 24689999999887644
No 125
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=94.72 E-value=0.019 Score=61.21 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=60.8
Q ss_pred CcCC-CCCcccccC--CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 001925 97 GRMH-LTNVRVIQR--NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 173 (995)
Q Consensus 97 ~RK~-LanVRVIQK--NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~ 173 (995)
.|+. +...+|.-+ ..+.|-+++..+...+| .++|++||++...++. ..+++|.|+.++||.
T Consensus 84 ~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl---~d~~~~~g~~~~~~~~-------------~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 84 DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDL---KDHFRPAGEVTYVDAR-------------RNFAFVEFSEQEDAK 147 (216)
T ss_pred CccchhhccCCcccccceeeeccchhhhhHHHH---hhhhcccCCCchhhhh-------------ccccceeehhhhhhh
Confidence 3444 556665333 34566677777766676 4999999999655541 246899999999999
Q ss_pred HHHHHhCCCCCCCeEEEE
Q 001925 174 RCIQSVHSYILDGRPLRA 191 (995)
Q Consensus 174 rAIqaLNG~~LdGRvLRA 191 (995)
+||..++|..+.|+.|++
T Consensus 148 ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISV 165 (216)
T ss_pred hcchhccchhhcCceeee
Confidence 999999999999999998
No 126
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.44 E-value=0.042 Score=40.07 Aligned_cols=39 Identities=31% Similarity=0.863 Sum_probs=29.7
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
|++|.+.. + ....-+||+.+|..|+..+.+ .....||.|
T Consensus 1 C~iC~~~~--~--~~~~~~C~H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL--K--DPVVLPCGHTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred CCcCccCC--C--CcEEecCCChHHHHHHHHHHH-----hCcCCCCCC
Confidence 89998883 2 344446999999999998864 356789987
No 127
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.34 E-value=0.042 Score=50.71 Aligned_cols=54 Identities=22% Similarity=0.789 Sum_probs=25.0
Q ss_pred cCCCCCCcccCCCc--cCCCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 5 AEKTCPLCAEEMDL--TDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 5 ~d~~CPLC~EelD~--TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
....|.+|-+.+-+ +-..|..| .|+|-||+-||..=+ .+.+-.||.|+.+|..-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-----keg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-----KEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-----HTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-----hcCcccccccCCCcccc
Confidence 45789999998744 44679999 899999999998654 35778999999999754
No 128
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.31 E-value=0.027 Score=63.48 Aligned_cols=55 Identities=25% Similarity=0.585 Sum_probs=44.0
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
||+++.|-||.+.+.- ...+ ||++|||.-|--|++.++ +..-||-||.+.++-.|
T Consensus 58 DEen~~C~ICA~~~TY--s~~~--PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 58 DEENMNCQICAGSTTY--SARY--PCGHQICHACAVRLRALY----MQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccccceeEEecCCceE--EEec--cCCchHHHHHHHHHHHHH----hccCCCccccccceEEE
Confidence 6778899999999843 2333 679999999999999865 56789999998876443
No 129
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.15 E-value=0.04 Score=55.26 Aligned_cols=56 Identities=27% Similarity=0.787 Sum_probs=43.6
Q ss_pred ccCCCCCCcccCCCccCCCc-cccCC-CCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQL-KPCNC-GYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F-~PC~C-GYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
.---+|.||-|-- +|..| +|=.| ||.||--||-.+-..+ +....||+|+.-|-.+.
T Consensus 78 ~~lYeCnIC~etS--~ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 78 PKLYECNICKETS--AEERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CCceeccCccccc--chhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCcccccccccc
Confidence 3345899999875 55555 88765 9999999999987643 48899999999776544
No 130
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.08 E-value=0.41 Score=54.86 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=61.7
Q ss_pred EeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C-eEEEE
Q 001925 114 IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G-RPLRA 191 (995)
Q Consensus 114 VvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G-RvLRA 191 (995)
|.|--+.|+ -|+| |.+--..|+|+.|+|.+.. +..|-|+|++.+-|.+|-.+|||..+. | -.||+
T Consensus 127 IlNp~YpIt-vDVl--y~Icnp~GkVlRIvIfkkn----------gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 127 ILNPQYPIT-VDVL--YTICNPQGKVLRIVIFKKN----------GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred eecCccccc-hhhh--hhhcCCCCceEEEEEEecc----------ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 344444564 4666 6899999999999998752 457999999999999999999999774 4 78999
Q ss_pred EeccCCccccccc
Q 001925 192 CFGTTKYCHAWIR 204 (995)
Q Consensus 192 SfGTTKYCs~FLR 204 (995)
.|+..-.-..+-.
T Consensus 194 eyAkP~rlnV~kn 206 (494)
T KOG1456|consen 194 EYAKPTRLNVQKN 206 (494)
T ss_pred EecCcceeeeeec
Confidence 9998866554443
No 131
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.04 E-value=0.036 Score=43.21 Aligned_cols=41 Identities=29% Similarity=0.730 Sum_probs=33.2
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
||+|.+.+.... ..=+||+.+|..|+.++++. .....||.|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 899999986533 56688999999999999752 567789987
No 132
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=94.03 E-value=0.026 Score=70.80 Aligned_cols=50 Identities=26% Similarity=0.856 Sum_probs=42.8
Q ss_pred CCCCCcccCCCccCC--Ccccc-CCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 7 KTCPLCAEEMDLTDQ--QLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 7 ~~CPLC~EelD~TD~--~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
.+|.+|-+++.+|.. .|.-| .|||-+|+-||.. |+.+.+-.||.|+..|.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY-----Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY-----ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhh-----hhhcCCccCCccCCchh
Confidence 589999999877654 68999 8999999999965 34578899999999997
No 133
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=93.98 E-value=0.031 Score=69.99 Aligned_cols=51 Identities=29% Similarity=0.902 Sum_probs=42.7
Q ss_pred CCCCCcccCCCccCC--Ccccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 7 KTCPLCAEEMDLTDQ--QLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~EelD~TD~--~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
++|.+|-+++.+|.. .|.-| .|+|-+|+-||..= ..+.+-.||.|+..|..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye-----~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE-----RSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhh-----hhcCCccCCccCCchhh
Confidence 689999999866543 68999 89999999999543 45688899999999983
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=93.81 E-value=0.059 Score=58.91 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=62.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
-.||.+-|...+.+ |+|- ..|.+|=.-.+-.+.|+..+. ...|++||.|.+.+|+.+|+..|||..+.-|+|
T Consensus 191 fRIfcgdlgNevnd-~vl~--raf~Kfpsf~~akviRdkRTg-----KSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 191 FRIFCGDLGNEVND-DVLA--RAFKKFPSFQKAKVIRDKRTG-----KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ceeecccccccccH-HHHH--HHHHhccchhhcccccccccc-----ccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 44677878878755 5553 699999988888888876442 367899999999999999999999999999999
Q ss_pred EEEec
Q 001925 190 RACFG 194 (995)
Q Consensus 190 RASfG 194 (995)
++--.
T Consensus 263 klRkS 267 (290)
T KOG0226|consen 263 KLRKS 267 (290)
T ss_pred Hhhhh
Confidence 86533
No 135
>PHA02926 zinc finger-like protein; Provisional
Probab=93.66 E-value=0.07 Score=57.43 Aligned_cols=57 Identities=28% Similarity=0.611 Sum_probs=37.2
Q ss_pred cCCCCCCcccCCC----ccCCCcc-ccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 5 AEKTCPLCAEEMD----LTDQQLK-PCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 5 ~d~~CPLC~EelD----~TD~~F~-PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
.|.+|++|+|.+- ..|+.|- .=+|++-.|+-|...-++....+.....||-||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3689999999862 3444442 3389999777777666542111123456999999764
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.24 E-value=0.21 Score=60.59 Aligned_cols=73 Identities=16% Similarity=0.337 Sum_probs=61.4
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiK-IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
|-+-|+|+++.-|||+ |+|..|-.|-. |.+-++..+ -++|-+-|-|++.|||.+|...+|+..|..|+|.
T Consensus 870 ~~~~n~Pf~v~l~dI~---~FF~dY~~~p~sI~~r~nd~G------~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~ 940 (944)
T KOG4307|consen 870 LSCNNFPFDVTLEDIV---EFFNDYEPDPNSIRIRRNDDG------VPTGECMVAFESQEEARRASMDLDGQKIRNRVVS 940 (944)
T ss_pred EEecCCCccccHHHHH---HHhcccccCCCceeEeecCCC------CcccceeEeecCHHHHHhhhhccccCcccceeEE
Confidence 5677999999999998 89999988875 444444444 2678899999999999999999999999999998
Q ss_pred EEe
Q 001925 191 ACF 193 (995)
Q Consensus 191 ASf 193 (995)
+-+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 754
No 137
>PLN02400 cellulose synthase
Probab=93.19 E-value=0.041 Score=69.17 Aligned_cols=50 Identities=26% Similarity=0.907 Sum_probs=42.6
Q ss_pred CCCCCcccCCCccCC--Ccccc-CCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 7 KTCPLCAEEMDLTDQ--QLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 7 ~~CPLC~EelD~TD~--~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
+.|.+|-+++.+|.. .|.-| .|+|-+|+-||.. |+.+.+-.||.|+..|.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-----ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-----ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhhe-----ecccCCccCcccCCccc
Confidence 489999999866654 68999 8999999999964 35578899999999997
No 138
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.00 E-value=0.11 Score=56.01 Aligned_cols=64 Identities=20% Similarity=0.477 Sum_probs=43.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhccccchHHH
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERA 75 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~~~~eel 75 (995)
..-.||++..+|.-.-+-.+.-+||.. ||+.-|.++ + .+..||.|-.+|.++.|+.+....+++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V---~s~~alke~--k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~ 175 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCV---FSEKALKEL--K--KSKKCPVCGKPFTEEDIIPLNPPEEEL 175 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCE---eeHHHHHhh--c--ccccccccCCccccCCEEEecCCccHH
Confidence 346899999999544444455688854 555555443 2 356799999999999888775555543
No 139
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.75 E-value=0.075 Score=63.22 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=55.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCce-EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC---
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKV-LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL--- 184 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKI-iKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L--- 184 (995)
-|.|||.||-.-++.-.| .++.|+-|.| ...+|.+-+. -.||+|.+.+||..-+.+|+|..+
T Consensus 444 SnvlhI~nLvRPFTlgQL---kelL~rtgg~Vee~WmDkIKS-----------hCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQL---KELLGRTGGNVEEFWMDKIKS-----------HCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred cceEeeecccccchHHHH---HHHHhhccCchHHHHHHHhhc-----------ceeEecccHHHHHHHHHHHhccccCCC
Confidence 488999999888876665 4899965554 4555543221 269999999999999999999876
Q ss_pred CCeEEEEEeccC
Q 001925 185 DGRPLRACFGTT 196 (995)
Q Consensus 185 dGRvLRASfGTT 196 (995)
.++-|-|.|++.
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 557777777653
No 140
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=92.69 E-value=0.078 Score=43.60 Aligned_cols=43 Identities=26% Similarity=0.681 Sum_probs=22.7
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCP 54 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCP 54 (995)
||+|.| |+-++..-+--+||+-||.-|..++.... +...-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~--~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS--DRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH---S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC--CCCeeeCc
Confidence 999999 86555554556799999999999997521 12455676
No 141
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=92.51 E-value=0.32 Score=52.34 Aligned_cols=75 Identities=13% Similarity=0.354 Sum_probs=62.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G 186 (995)
+.+.+++.+||.....|. | ..+|.||.--..|++...+ ++.|||+|.+...|.-|.+++.|+.+- .
T Consensus 145 pn~ilf~~niP~es~~e~-l--~~lf~qf~g~keir~i~~~----------~~iAfve~~~d~~a~~a~~~lq~~~it~~ 211 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEM-L--SDLFEQFPGFKEIRLIPPR----------SGIAFVEFLSDRQASAAQQALQGFKITKK 211 (221)
T ss_pred CceEEEEecCCcchhHHH-H--HHHHhhCcccceeEeccCC----------CceeEEecchhhhhHHHhhhhccceeccC
Confidence 467899999999985554 4 4899999999999987432 468999999999999999999999875 7
Q ss_pred eEEEEEecc
Q 001925 187 RPLRACFGT 195 (995)
Q Consensus 187 RvLRASfGT 195 (995)
..+++.|+.
T Consensus 212 ~~m~i~~a~ 220 (221)
T KOG4206|consen 212 NTMQITFAK 220 (221)
T ss_pred ceEEecccC
Confidence 788888763
No 142
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.35 E-value=0.3 Score=49.68 Aligned_cols=52 Identities=23% Similarity=0.477 Sum_probs=40.9
Q ss_pred hhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccC
Q 001925 131 EYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT 196 (995)
Q Consensus 131 EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTT 196 (995)
+.|.+||.++=|+... +.-+|||.+-+.|.+|+. +||..+.|+.|++..-|+
T Consensus 55 ~~~~~~GevvLvRfv~-------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 55 QKFAQYGEVVLVRFVG-------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHCCS-ECEEEEET-------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHhCCceEEEEEeC-------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 7999999888776642 236999999999998765 999999999999998665
No 143
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.29 E-value=0.24 Score=58.35 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=74.8
Q ss_pred CCcccccCCEEEEeCCCCCCChHHHHHhHhhhc-CCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH--
Q 001925 102 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFG-QYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS-- 178 (995)
Q Consensus 102 anVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFG-QYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqa-- 178 (995)
.+..|--|-+|||+|||.-++-+||- .+|. -||.|.-|-|..|.+.. -|.|.+=|||.+...=.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA---~imd~lyGgV~yaGIDtD~k~K-----YPkGaGRVtFsnqqsYi~AIsarF 434 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELA---MIMEDLFGGVLYVGIDTDPKLK-----YPKGAGRVTFSNQQAYIKAISARF 434 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHH---HHHHHhcCceEEEEeccCcccC-----CCCCcceeeecccHHHHHHHhhhe
Confidence 44556668889999999999999974 6888 89999999998886543 4688999999999999999986
Q ss_pred --hCCCCCCCeE-EE----------EEecc---CCcccccccCCCCCCCCCcc
Q 001925 179 --VHSYILDGRP-LR----------ACFGT---TKYCHAWIRNMPCSVPDCLY 215 (995)
Q Consensus 179 --LNG~~LdGRv-LR----------ASfGT---TKYCs~FLRn~~C~NpdCmY 215 (995)
|+-..++-|+ |+ .+=|+ -|+-.+|-+++.|...=|-+
T Consensus 435 vql~h~d~~KRVEIkPYv~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~ 487 (520)
T KOG0129|consen 435 VQLDHTDIDKRVEIKPYVMEDQLCDECGGRRCGGQFAPFFCRNATCFQYYCES 487 (520)
T ss_pred EEEeccccceeeeecceeccccchhhhcCeeccCccCCcccCCccHHhhhchH
Confidence 2222222221 11 11121 25555577777777776654
No 144
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.21 E-value=0.094 Score=58.27 Aligned_cols=47 Identities=23% Similarity=0.679 Sum_probs=40.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
.+-.+||.|.+.|.+ ..+-|.=|+-+|-.|--+. ..+||.||.++.+
T Consensus 46 ~~lleCPvC~~~l~~---Pi~QC~nGHlaCssC~~~~---------~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSP---PIFQCDNGHLACSSCRTKV---------SNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcc---cceecCCCcEehhhhhhhh---------cccCCcccccccc
Confidence 345799999999987 8899999999999998765 4699999999983
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.81 E-value=0.29 Score=54.74 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=51.5
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
.-|-|.|.|+.-.. -|| ..|.+||.|+|.|... .+..-||.|..+-+|.+||. -||..|+|-++
T Consensus 198 ~WVTVfGFppg~~s-~vL---~~F~~cG~Vvkhv~~~-----------ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVL---NLFSRCGEVVKHVTPS-----------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHH---HHHHhhCeeeeeecCC-----------CCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 34778899887533 456 6999999999999762 23478999999999999997 58899988765
Q ss_pred E
Q 001925 190 R 190 (995)
Q Consensus 190 R 190 (995)
-
T Consensus 262 i 262 (350)
T KOG4285|consen 262 I 262 (350)
T ss_pred E
Confidence 3
No 146
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=91.65 E-value=0.41 Score=56.20 Aligned_cols=73 Identities=16% Similarity=0.339 Sum_probs=54.7
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK-IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
-.|=+.|||+.++++||. ++|.--=-+.+ |-+..++.+ .+++-|||.|+++|.|++|++.-. ..+.-|.
T Consensus 104 ~vVRLRGLPfscte~dI~---~FFaGL~Iv~~gi~l~~d~rg------R~tGEAfVqF~sqe~ae~Al~rhr-e~iGhRY 173 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIV---EFFAGLEIVPDGILLPMDQRG------RPTGEAFVQFESQESAEIALGRHR-ENIGHRY 173 (510)
T ss_pred ceEEecCCCccCcHHHHH---HHhcCCcccccceeeeccCCC------CcccceEEEecCHHHHHHHHHHHH-Hhhccce
Confidence 346688999999999996 89998865555 334455443 368899999999999999998654 4565566
Q ss_pred EEEE
Q 001925 189 LRAC 192 (995)
Q Consensus 189 LRAS 192 (995)
|-|-
T Consensus 174 IEvF 177 (510)
T KOG4211|consen 174 IEVF 177 (510)
T ss_pred EEee
Confidence 6543
No 147
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=91.53 E-value=0.11 Score=42.08 Aligned_cols=42 Identities=26% Similarity=0.778 Sum_probs=27.2
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
||+|.+-|. .=...+||+..|+.|..++.+. .......||-|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~--~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKE--PSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCC--SSSST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHc--cCCcCCCCcCC
Confidence 899999984 3344688999999999999742 12223689987
No 148
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=90.79 E-value=0.12 Score=57.35 Aligned_cols=46 Identities=30% Similarity=0.881 Sum_probs=37.2
Q ss_pred CCCCCcccCCCccCCCcccc--CCCCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPC--NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC--~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
.-|-||-+-|.+ || +||+-+|-+|-.+-+ +.+..||+||.+.-+..
T Consensus 26 lrC~IC~~~i~i------p~~TtCgHtFCslCIR~hL------~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 26 LRCRICDCRISI------PCETTCGHTFCSLCIRRHL------GTQPFCPVCREDPCESR 73 (391)
T ss_pred HHhhhhhheeec------ceecccccchhHHHHHHHh------cCCCCCccccccHHhhh
Confidence 469999888876 88 899999999986654 46889999999776654
No 149
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.69 E-value=0.29 Score=60.64 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=71.6
Q ss_pred ccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001925 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 105 RVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
.+.-..-++|+||.+.....-|+ ..|+.||.|..|.+-+. ..+|||.|+..+-|..|.+.|-|+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~---r~fd~fGpir~Idy~hg-----------q~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLN---REFDRFGPIRIIDYRHG-----------QPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccccceeeccCCCCCCChHHHHH---HHhhccCcceeeecccC-----------CcceeeecccCccchhhHHHHhcCcC
Confidence 34445678999999998776665 69999999999876421 23699999999999999999999999
Q ss_pred CC--eEEEEEeccC--CcccccccCCCCC
Q 001925 185 DG--RPLRACFGTT--KYCHAWIRNMPCS 209 (995)
Q Consensus 185 dG--RvLRASfGTT--KYCs~FLRn~~C~ 209 (995)
.| +.|||.|+.+ +|-...|.-.+=.
T Consensus 517 G~P~~r~rvdla~~~~~~Pqq~~~~~p~~ 545 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPGATPQQNLLTSPPV 545 (975)
T ss_pred CCCCcccccccccCCCCChhhhcccCCCC
Confidence 87 7799999876 6655555444433
No 150
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=90.57 E-value=0.23 Score=53.85 Aligned_cols=63 Identities=13% Similarity=0.319 Sum_probs=49.6
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
.++||.||.+++++++ || .+|..|--...++|- .+ +....|||.|+..|.|.+|+..+.|+.|
T Consensus 211 stlfianl~~~~~ed~-l~--~~~~~~~gf~~l~~~-~~--------~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDE-LK--QLLSRYPGFHILKIR-AR--------GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHH-HH--HHHHhCCCceEEEEe-cC--------CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 5789999999987666 44 799998766655552 12 1356899999999999999999999876
No 151
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.08 E-value=0.93 Score=53.63 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=52.4
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCc---EEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSC---CVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rg---sAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
..|||+|||+.++++.|. ..|++||.+. |.=.+..... ...+ +.| +||+.|+++.....=|.+.-- .-++
T Consensus 260 ~KVFvGGlp~dise~~i~---~~F~~FGs~~-VdWP~k~~~~-~~~p-pkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQIN---ASFGQFGSVK-VDWPGKANSR-GRAP-PKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred cceeecCCCccccHHHHH---hhcccccceE-eecCCCcccc-ccCC-CCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 569999999999888875 7999999874 2222211111 1112 344 999999998777666665542 4445
Q ss_pred eEEEEEeccC
Q 001925 187 RPLRACFGTT 196 (995)
Q Consensus 187 RvLRASfGTT 196 (995)
-.|+|+--|.
T Consensus 333 ~yf~vss~~~ 342 (520)
T KOG0129|consen 333 YYFKVSSPTI 342 (520)
T ss_pred eEEEEecCcc
Confidence 5677775444
No 152
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=89.42 E-value=0.39 Score=45.07 Aligned_cols=54 Identities=22% Similarity=0.586 Sum_probs=34.4
Q ss_pred cCCCCCCcccCCCcc---------CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 5 AEKTCPLCAEEMDLT---------DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 5 ~d~~CPLC~EelD~T---------D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
+|++|+||..+||.+ |-.+.-+.|+..+-.-|..+=++ ....++.||-||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~---~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLS---TQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHc---cccCCCCCCCcCCeee
Confidence 467888888888732 22333356777755555444443 2345799999999874
No 153
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.58 E-value=1.3 Score=39.43 Aligned_cols=56 Identities=23% Similarity=0.526 Sum_probs=42.6
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCC----CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQY----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQY----GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL 179 (995)
++-+.|+|.|+. .+..+|++ .||..| ++ .+|.-..+. ++=|.|.+.+.|.+|+.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~---~y~~~y~~~~~~-~~IEWIdDt------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIK---AYFSEYFDEEGP-FRIEWIDDT------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHH---HHHHHhcccCCC-ceEEEecCC------------cEEEEECCHHHHHHHHHcC
Confidence 567889999984 47788986 799999 43 345443332 4789999999999999875
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=88.06 E-value=0.68 Score=50.94 Aligned_cols=68 Identities=13% Similarity=0.279 Sum_probs=53.8
Q ss_pred cccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001925 104 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 104 VRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
||.--+--|||++|...+..|.++ +-|.+||.|..-|+..+..+. +++-..|.|..+-.|.+|.....
T Consensus 26 ~rfa~~a~l~V~nl~~~~sndll~---~~f~~fg~~e~av~~vD~r~k------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 26 VRFAMHAELYVVNLMQGASNDLLE---QAFRRFGPIERAVAKVDDRGK------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred EEeeccceEEEEecchhhhhHHHH---HhhhhcCccchheeeeccccc------ccccchhhhhcchhHHHHHHHhc
Confidence 333345779999999998777654 899999999998887655432 45667999999999999999883
No 155
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=0.3 Score=57.70 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCCCccCCCcccc--CCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPC--NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC--~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
..+..|++|.|+|-.-+. ..|+ +||+..|..|+-.-.+. .--||-||..+.....
T Consensus 289 ~~~~~C~IC~e~l~~~~~-~~~~rL~C~Hifh~~CL~~W~er------~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHN-ITPKRLPCGHIFHDSCLRSWFER------QQTCPTCRTVLYDYVL 345 (543)
T ss_pred hcCCeeeeechhhccccc-cccceeecccchHHHHHHHHHHH------hCcCCcchhhhhcccc
Confidence 347899999999954333 3344 89999999999877652 5679999995554443
No 156
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=0.41 Score=54.89 Aligned_cols=49 Identities=31% Similarity=0.723 Sum_probs=38.3
Q ss_pred cCCCCCCcccCCCccC---------CCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccc
Q 001925 5 AEKTCPLCAEEMDLTD---------QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTA 59 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD---------~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrp 59 (995)
+|..|.+||+||=-+| +.-|--+||+-.=+-|+..-+|. .--||-||+|
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER------qQTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER------QQTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh------ccCCCcccCc
Confidence 5689999999964444 33356799999999999888762 4569999997
No 157
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.42 E-value=1 Score=47.10 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=42.9
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC--CCCCCCeEEEEEeccC
Q 001925 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH--SYILDGRPLRACFGTT 196 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN--G~~LdGRvLRASfGTT 196 (995)
.++|.+|+.+..++..+.- ..+-|.|.+.++|.+|...++ |..+.|..||+.||..
T Consensus 13 ~~l~~~~~~~~~~~~L~sF-----------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 13 EELFSTYDPPVQFSPLKSF-----------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHTT-SS-EEEEETTT-----------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHhcCCceEEEEcCCC-----------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4899999999999887543 247899999999999999999 9999999999999943
No 158
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=0.68 Score=54.74 Aligned_cols=51 Identities=27% Similarity=0.649 Sum_probs=38.5
Q ss_pred CCCCCCcccCCCccCCCcccc--CCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPC--NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC--~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+..||||.|+-.. || .||+-.|.-|.=+..... +...-++||=||.-..-.
T Consensus 186 ~~~CPICL~~~~~------p~~t~CGHiFC~~CiLqy~~~s-~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV------PVRTNCGHIFCGPCILQYWNYS-AIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc------ccccccCceeeHHHHHHHHhhh-cccCCccCCchhhhcccc
Confidence 6789999999753 33 499998888877766644 445778999999955543
No 159
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.56 E-value=1.8 Score=50.02 Aligned_cols=58 Identities=24% Similarity=0.419 Sum_probs=45.1
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceE----EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVL----KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 178 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIi----KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqa 178 (995)
|-..|||+..++.|++ ++|++--.|. +|-..+...+ .++|-|||.|..+|+|..|++.
T Consensus 164 vRmRGLPfdat~~dVv---~FF~~~cpv~~g~egvLFV~rpdg------rpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVV---EFFGPPCPVTGGTEGVLFVTRPDG------RPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEecCCCCCcchHHHH---HhcCCCCcccCCccceEEEECCCC------CcccceEEEecCHHHHHHHHHH
Confidence 3457999999999998 8999654444 5555555444 3688999999999999999875
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=85.40 E-value=0.75 Score=53.54 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=61.0
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeec---CCCCcccCCC------CCcEEEEEeCCHHHHHHHHH
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRT---ATGDIQHSAN------NSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd---~~g~~q~~~~------~rgsAYVTFsrkEDA~rAIq 177 (995)
+|--+|.|-+||..-..|.|+ ++||.+|.|..|.|-+- .... .+.+. .+-.|+|.|...+-|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~---kiFg~~G~IksIRIckPgaip~d~-r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLS---KIFGTVGSIKSIRICKPGAIPEDV-RGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHH---HHhhcccceeeeeecCCCCCCccc-ccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 366789999999998888887 79999999999999754 1110 01111 24568999999999999999
Q ss_pred HhCCCCCCCeEEEEEe
Q 001925 178 SVHSYILDGRPLRACF 193 (995)
Q Consensus 178 aLNG~~LdGRvLRASf 193 (995)
.++-...--..|||-.
T Consensus 305 ~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVKL 320 (484)
T ss_pred hhchhhhhhhcchhhh
Confidence 9976655444455543
No 161
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.36 E-value=0.54 Score=57.20 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=66.6
Q ss_pred CCCCccccc--CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001925 100 HLTNVRVIQ--RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 100 ~LanVRVIQ--KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK-IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
-=++||+-. .+.|||-+||....+.+++ ++|..--.|.+ |.|.+-.... -+.-|||.|.+++++..|.
T Consensus 423 ~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v---~~f~~~~~Ved~I~lt~~P~~~------~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 423 PGQNVPFPGGAGGALYVFQLPVMTPIVPPV---NKFMGAAAVEDFIELTRLPTDL------LRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred CCCCCCCCCCccceEEeccCCccccccchh---hhhhhhhhhhheeEeccCCccc------ccchhhheeccccccchhh
Confidence 445566554 4889999999999888887 68888888888 7776544332 3567999999999999999
Q ss_pred HHhCCCCCCCeEEEEE
Q 001925 177 QSVHSYILDGRPLRAC 192 (995)
Q Consensus 177 qaLNG~~LdGRvLRAS 192 (995)
..-.-+.+.-|+|||.
T Consensus 494 ~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 494 SVKTKFYPGHRIIRVD 509 (944)
T ss_pred hcccccccCceEEEee
Confidence 9888888888889875
No 162
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=0.26 Score=56.06 Aligned_cols=50 Identities=20% Similarity=0.588 Sum_probs=36.7
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+..||+|.+-|.. ..-.=.|++++|.-|.-.-+. ..+.-||.||+-.+..
T Consensus 43 ~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r-----~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKK---TMTTKECLHRFCFDCIWKALR-----SGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHH-----hcCCCCchHHhhcccc
Confidence 5789999987743 223337999999999765543 3688899999976554
No 163
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.67 Score=51.10 Aligned_cols=51 Identities=27% Similarity=0.491 Sum_probs=33.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+.|-.|+||+|++.. +--=+||+-.|++|.--... ...-+.||-||+--..
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t----~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWT----KKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHH----hhccccCchhhhhccc
Confidence 456789999999953 22238999977777654221 1234679999984433
No 164
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.46 E-value=1.2 Score=49.74 Aligned_cols=53 Identities=26% Similarity=0.623 Sum_probs=39.8
Q ss_pred CCCCcccCC-CccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 8 TCPLCAEEM-DLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 8 ~CPLC~Eel-D~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
.||.|.-.- =.-|..++-=+|||.+|--|..+|.. ...+.||.|-+..-...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-----~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-----LGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-----cCCCCCCcccchhhhccc
Confidence 599996543 12234455559999999999999964 578999999997766655
No 165
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.54 E-value=0.53 Score=55.19 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=54.7
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
|++..++-+--.|+.+..-+.| ...|.+||+|..|.|.... -.|-|||.+..||-+|-. ..|..|+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~l--n~hfA~fG~i~n~qv~~~~-----------~~a~vTF~t~aeag~a~~-s~~avln 434 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADL--NPHFAQFGEIENIQVDYSS-----------LHAVVTFKTRAEAGEAYA-SHGAVLN 434 (526)
T ss_pred hcccchhhhhccCCCCchHhhh--hhhhhhcCccccccccCch-----------hhheeeeeccccccchhc-cccceec
Confidence 3344444444455555433333 4899999999999986431 247899999999966644 6789999
Q ss_pred CeEEEEEeccC
Q 001925 186 GRPLRACFGTT 196 (995)
Q Consensus 186 GRvLRASfGTT 196 (995)
+|.||+-|-.-
T Consensus 435 nr~iKl~whnp 445 (526)
T KOG2135|consen 435 NRFIKLFWHNP 445 (526)
T ss_pred CceeEEEEecC
Confidence 99999987443
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.26 E-value=3.2 Score=39.34 Aligned_cols=56 Identities=16% Similarity=0.428 Sum_probs=43.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
|.-||-+..|..-...||+ ++|..||.|.=-.|+. .+|||...+.+.|..++..++
T Consensus 8 RdHVFhltFPkeWK~~DI~---qlFspfG~I~VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIY---QLFSPFGQIYVSWIND-------------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHH---HHCCCCCCEEEEEECT-------------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHH---HHhccCCcEEEEEEcC-------------CcEEEEeecHHHHHHHHHHhc
Confidence 4557888899999999996 8999999987555541 279999999999999999886
No 167
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=83.21 E-value=0.53 Score=53.51 Aligned_cols=50 Identities=20% Similarity=0.674 Sum_probs=39.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
-.-|-||.|-|.+ --+-| ||+-+|-+|-...+. ...-||+|+.++.|...
T Consensus 23 lLRC~IC~eyf~i--p~itp--CsHtfCSlCIR~~L~------~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNI--PMITP--CSHTFCSLCIRKFLS------YKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcC--ceecc--ccchHHHHHHHHHhc------cCCCCCceecccchhhh
Confidence 3579999999976 23344 999999999887763 57889999998887654
No 168
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=83.14 E-value=1.4 Score=39.18 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+-.||||.+.| +|-... +||+-+|+-|+.+-++ ...+.||-||++...+.++
T Consensus 4 ~f~CpIt~~lM--~dPVi~--~~G~tyer~~I~~~l~-----~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVIL--PSGHTYERSAIERWLE-----QNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB---SSEEEE--TTSEEEEHHHHHHHHC-----TTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHh--hCceeC--CcCCEEcHHHHHHHHH-----cCCCCCCCCCCcCCcccce
Confidence 46899999999 455554 5779988988877753 2479999999999887654
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.36 E-value=0.55 Score=58.09 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
|-+|+|.|.|+.-++|++ ..+|..+|.++++.+...+.+. +.|-|||.|.++.+|.+|...+++..+.-+.
T Consensus 736 K~~v~i~g~pf~gt~e~~---k~l~~~~gn~~~~~~vt~r~gk------pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEEL---KSLASKTGNVTSLRLVTVRAGK------PKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred hhhhheeCCCCCCchHHH---HhhccccCCccccchhhhhccc------cccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 778999999999988886 3899999999999876655543 6789999999999999999999998887777
Q ss_pred EEEEec
Q 001925 189 LRACFG 194 (995)
Q Consensus 189 LRASfG 194 (995)
+.+..+
T Consensus 807 ~~v~vs 812 (881)
T KOG0128|consen 807 GEVQVS 812 (881)
T ss_pred cccccc
Confidence 776643
No 170
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=81.16 E-value=0.63 Score=47.43 Aligned_cols=28 Identities=32% Similarity=0.958 Sum_probs=23.8
Q ss_pred cCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 26 CNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 26 C~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
|+| -++|.-|...-+ ..+||+|+.||=.
T Consensus 2 ~kc-t~tC~ic~e~~~--------KYKCpkC~vPYCS 29 (157)
T KOG2857|consen 2 CKC-TTTCVICLESEI--------KYKCPKCSVPYCS 29 (157)
T ss_pred Ccc-eeeehhhhcchh--------hccCCCCCCcccc
Confidence 888 999999997653 5899999999954
No 171
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=80.93 E-value=1.2 Score=39.83 Aligned_cols=47 Identities=23% Similarity=0.604 Sum_probs=30.3
Q ss_pred cCCCCCCcccCCCccC---------CCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccc
Q 001925 5 AEKTCPLCAEEMDLTD---------QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACR 57 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD---------~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACR 57 (995)
+++.|++|.++|+..- ..+.-=+||+....-|..+-++ .+..||-||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK------QNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT------TSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh------cCCcCCCCC
Confidence 4556999999993221 1111126999987778776653 344999998
No 172
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=1.3 Score=48.16 Aligned_cols=59 Identities=20% Similarity=0.524 Sum_probs=42.0
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhcc
Q 001925 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~ 68 (995)
|...-+|.||.+.-. | .... -||+-.|+=|+|+-+.. ......||-|+...+.++++.+
T Consensus 44 ~~~~FdCNICLd~ak--d-PVvT-lCGHLFCWpClyqWl~~---~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK--D-PVVT-LCGHLFCWPCLYQWLQT---RPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccC--C-CEEe-ecccceehHHHHHHHhh---cCCCeeCCccccccccceEEee
Confidence 345568999976542 2 3333 38999999999988763 2344568999999999988643
No 173
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.98 E-value=2.8 Score=47.24 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=31.0
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
..||||--.|--- ---|| ||.-+|--|....+ -+.+..||.|.+
T Consensus 275 LkCplc~~Llrnp--~kT~c-C~~~fc~eci~~al-----~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MKTPC-CGHTFCDECIGTAL-----LDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--ccCcc-ccchHHHHHHhhhh-----hhccccCCCccc
Confidence 6899998766321 11144 89999999986543 136899999987
No 174
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=78.84 E-value=1.1 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=18.7
Q ss_pred cccccccCCCCCCCCCcccc
Q 001925 198 YCHAWIRNMPCSVPDCLYLH 217 (995)
Q Consensus 198 YCs~FLRn~~C~NpdCmYLH 217 (995)
-|.+.|+|..|++++|.|.|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 48899999999999999999
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.64 E-value=2 Score=49.77 Aligned_cols=73 Identities=11% Similarity=0.248 Sum_probs=52.6
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
|.|.||.+.++.+.+ +.+||-.|+|..+.+.-+... ...+...-.+||-|.+...+.-|-+.. .+++-|+.|-
T Consensus 10 Iqvanispsat~dqm---~tlFg~lGkI~elrlyp~~~d--~~~pv~sRtcyVkf~d~~sv~vaQhLt-ntvfvdrali 82 (479)
T KOG4676|consen 10 IQVANISPSATKDQM---QTLFGNLGKIPELRLYPNVDD--SKIPVISRTCYVKFLDSQSVTVAQHLT-NTVFVDRALI 82 (479)
T ss_pred eeecccCchhhHHHH---HHHHhhccccccccccCCCCC--ccCcceeeeEEEeccCCcceeHHhhhc-cceeeeeeEE
Confidence 569999999998887 489999999999998643221 123334557899999988887775544 4555555543
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.79 E-value=1.1 Score=51.79 Aligned_cols=50 Identities=30% Similarity=0.733 Sum_probs=44.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
-+..|-+|-|.+-+.|.++..-||.+.+=.-|.+.|++ .+..-.||+||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~----~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE----NNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH----hCCCCCCccHHH
Confidence 35689999999999999999999999999999999985 467788999995
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=76.54 E-value=9.7 Score=39.52 Aligned_cols=71 Identities=11% Similarity=0.241 Sum_probs=51.3
Q ss_pred CEEEEeCCCCCCChHHHHHh-HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 110 NLVYIIGLPINLADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk-~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+|.|.=|.-++...+-|++ ....+.||+|..|.+- .+-+|-|+|.+...|-+|+.+... ..-|..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 45566555555443332343 4678999999998763 234799999999999999999875 666888
Q ss_pred EEEEe
Q 001925 189 LRACF 193 (995)
Q Consensus 189 LRASf 193 (995)
++|+|
T Consensus 154 ~qCsW 158 (166)
T PF15023_consen 154 FQCSW 158 (166)
T ss_pred EEeec
Confidence 88876
No 178
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=76.07 E-value=3.5 Score=42.60 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcC-CCceE---EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQ-YGKVL---KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQ-YGKIi---KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
+..|-|..||+.+++++++ +.... +|... -+.-....... .+..-..|||.|.+.+++..=+..++|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~---~~i~~~l~~~~~w~y~~g~~~~~~~---~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFW---EQISPWLPDEWDWYYFQGKYGKKSF---KPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHC---CCCSS--SSE---EEEEEEES-SSS---TTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHH---HHhhhhcccccceEEEecCCCCccC---CCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4578899999999999876 55555 55552 22201111111 011234699999999999999999999665
No 179
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=1.5 Score=50.05 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=38.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
|.-++|=+|+.+- .|....||. -.=+|.-|-.-++ -...+||=||++..+
T Consensus 288 ~~gkeCVIClse~--rdt~vLPCR-HLCLCs~Ca~~Lr------~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSES--RDTVVLPCR-HLCLCSGCAKSLR------YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCC--cceEEecch-hhehhHhHHHHHH------HhhcCCCccccchHh
Confidence 3357999999986 788999994 1126888988886 246899999997754
No 180
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=1 Score=39.77 Aligned_cols=47 Identities=32% Similarity=0.747 Sum_probs=33.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
+.+|-+|+|-- .|..++.| |+- +|--|--++ +....|.||-||+|..
T Consensus 7 ~dECTICye~p--vdsVlYtC--GHMCmCy~Cg~rl-----~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHP--VDSVLYTC--GHMCMCYACGLRL-----KKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCc--chHHHHHc--chHHhHHHHHHHH-----HHccCCcCcchhhHHH
Confidence 47899999964 67788865 442 444555555 3348999999999753
No 181
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.70 E-value=2.4 Score=44.05 Aligned_cols=50 Identities=24% Similarity=0.670 Sum_probs=35.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCC-C-----CchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNC-G-----YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~C-G-----YQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+.+..|-+|.++-+. ...||.| | +|-|+ .+=++ ....-+|+-|+.+|.=.
T Consensus 6 ~~~~~CRIC~~~~~~---~~~PC~CkGs~k~VH~sCL---~rWi~----~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV---VTNYCNCKNENKIVHKECL---EEWIN----TSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC---ccCCcccCCCchHHHHHHH---HHHHh----cCCCCcccccCCeEEEE
Confidence 456899999999652 3579999 6 56554 33322 23577999999999654
No 182
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.71 E-value=4.2 Score=46.83 Aligned_cols=60 Identities=25% Similarity=0.534 Sum_probs=43.0
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCc--cccccccccch
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCP--ACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCP--ACRrpYdee~I 65 (995)
...|.+|+.+.--.|.-|..+.|++++|..||.+-++.........+|| .|-.....+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 4689999944434556666999999999999987777554556667787 56665555443
No 183
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=72.81 E-value=2.6 Score=49.29 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=59.6
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC-CCCCeE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY-ILDGRP 188 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~-~LdGRv 188 (995)
|.+|+++|.+.++..||- ..||.- |+-.+.. .--..++|||.+.+..-|.+||+.++|. ++.|+.
T Consensus 2 nklyignL~p~~~psdl~---svfg~a----k~~~~g~-------fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLE---SVFGDA----KIPGSGQ-------FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHH---HHhccc----cCCCCcc-------eeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 679999999999998874 688876 2222211 1124678999999999999999999996 589999
Q ss_pred EEEEeccCCcc
Q 001925 189 LRACFGTTKYC 199 (995)
Q Consensus 189 LRASfGTTKYC 199 (995)
+.+.+...|--
T Consensus 68 ~e~~~sv~kkq 78 (584)
T KOG2193|consen 68 QEVEHSVPKKQ 78 (584)
T ss_pred eeccchhhHHH
Confidence 99988877543
No 184
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.15 E-value=2.1 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.717 Sum_probs=20.6
Q ss_pred CCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 21 QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 21 ~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
.-++|||||=+ +.--++..+..+.-.+||.|--
T Consensus 20 ~y~yPCpCGDr-----f~It~edL~~ge~Va~CpsCSL 52 (67)
T KOG2923|consen 20 TYYYPCPCGDR-----FQITLEDLENGEDVARCPSCSL 52 (67)
T ss_pred eEEcCCCCCCe-----eeecHHHHhCCCeeecCCCceE
Confidence 34699999865 1112233334556789999965
No 185
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.91 E-value=6.6 Score=35.36 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=26.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 162 VYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 162 AYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
-||.|.+.+||++|..+.||..+.+..|.
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 59999999999999999999988776654
No 186
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=68.23 E-value=3.3 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.648 Sum_probs=41.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+++..||+|+-.+-. .+.+=.||...|.+|...... ....||+||++-.-+..
T Consensus 19 ~~~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~------~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLS------NHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccC---CCCCCCCCCcccccccchhhc------cCcCCcccccccchhhc
Confidence 456899999999843 444478999999999988853 27899999997655543
No 187
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=67.85 E-value=0.79 Score=56.77 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
+-+.+||.+|++.++++|| .+.|+.||-|..|.|...... ...+|.|||.|...++|.+||...++..+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl---~~~~~~~~~~e~vqi~~h~n~-----~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDL---SERFSPSGTIEVVQIVIHKNE-----KRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchh---hhhcCccchhhhHHHHHHhhc-----cccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3477999999999999997 489999999988776511110 134789999999999999999988865543
No 188
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.30 E-value=0.63 Score=42.40 Aligned_cols=42 Identities=31% Similarity=0.718 Sum_probs=27.1
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
|..||.|-.+|+.+. |--.|..|-.++. ..++||.|..+...
T Consensus 1 e~~CP~C~~~L~~~~--------~~~~C~~C~~~~~-------~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG--------GHYHCEACQKDYK-------KEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEET--------TEEEETTT--EEE-------EEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEeC--------CEEECccccccce-------ecccCCCcccHHHH
Confidence 458999999999877 6667889988874 47899999998765
No 189
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=65.77 E-value=3.3 Score=36.97 Aligned_cols=53 Identities=26% Similarity=0.521 Sum_probs=20.1
Q ss_pred CCCCCCcccCCC-ccCCCcccc---CCC---CchhhhhHHHHHHhhhcc-----CCCCCCcccccccc
Q 001925 6 EKTCPLCAEEMD-LTDQQLKPC---NCG---YEICVWCWNHIMEMAEKD-----GTEGRCPACRTAYD 61 (995)
Q Consensus 6 d~~CPLC~EelD-~TD~~F~PC---~CG---YQIC~fC~h~I~~~aek~-----~~~grCPACRrpYd 61 (995)
+..|+||++.+. .....-.-| .|+ +..|+.=|=+= .++. -..|.||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~---~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS---LEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH---HHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH---cccCCeeecccccCCcCCCCeee
Confidence 468999999875 322333444 675 45566655321 1121 23578999999753
No 190
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=63.68 E-value=2.5 Score=37.85 Aligned_cols=36 Identities=22% Similarity=0.634 Sum_probs=20.3
Q ss_pred ccCCCc-cccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 18 LTDQQL-KPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 18 ~TD~~F-~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
...+.| +|||||-+. .--+..++ .-+.-.|||.|--
T Consensus 16 ~e~~~ftyPCPCGDRF-eIsLeDl~----~GE~VArCPSCSL 52 (67)
T COG5216 16 REEKTFTYPCPCGDRF-EISLEDLR----NGEVVARCPSCSL 52 (67)
T ss_pred CCCceEEecCCCCCEe-EEEHHHhh----CCceEEEcCCceE
Confidence 333444 899998551 01123332 2345689999965
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=62.78 E-value=11 Score=45.78 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=57.4
Q ss_pred CCCCcccccC-CEEEEeCCCCCCChHHHHHhHhhhcC--CCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001925 100 HLTNVRVIQR-NLVYIIGLPINLADEDLLQRKEYFGQ--YGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 100 ~LanVRVIQK-NLVYVvGLP~~IAeEDLLRk~EyFGQ--YGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
....||-++| ..|.+.-||.....|++- -+|.- .=|++......+ -.-||||++.+||..|.
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk---~lf~~encPk~iscefa~N------------~nWyITfesd~DAQqAy 229 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVK---ALFKGENCPKVISCEFAHN------------DNWYITFESDTDAQQAY 229 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHH---HHhccCCCCCceeeeeeec------------CceEEEeecchhHHHHH
Confidence 3455775554 556667788887777762 56643 234444443211 13599999999999999
Q ss_pred HHhCC--CCCCCeEEEEEeccCCcccccc
Q 001925 177 QSVHS--YILDGRPLRACFGTTKYCHAWI 203 (995)
Q Consensus 177 qaLNG--~~LdGRvLRASfGTTKYCs~FL 203 (995)
++|-. .++.|+.|.|-+ |-|.+|+
T Consensus 230 kylreevk~fqgKpImARI---Kaintf~ 255 (684)
T KOG2591|consen 230 KYLREEVKTFQGKPIMARI---KAINTFF 255 (684)
T ss_pred HHHHHHHHhhcCcchhhhh---hhhhccc
Confidence 98876 467899988654 4477776
No 192
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=13 Score=40.35 Aligned_cols=49 Identities=27% Similarity=0.681 Sum_probs=39.9
Q ss_pred CCCCCcccCCCccCCCc--cccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001925 7 KTCPLCAEEMDLTDQQL--KPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F--~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
..|-+|-++++.-|... +--+||.-||..|..++. .+....||-||.+-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~-----~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL-----GNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHh-----cCceeeccCCCCcc
Confidence 57999999997764444 334799999999999996 46788999999974
No 193
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=60.87 E-value=2.2 Score=53.45 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=63.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+||+++|...+++.+|- ..|+.||+|.+|.|.+.+.+ ....+|||.|.+-.-|-+|...+-|..|.--.
T Consensus 372 trTLf~Gnl~~kl~eseiR---~af~e~gkve~VDiKtP~~~------~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIR---PAFDESGKVEEVDIKTPHIK------TESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhcCcccchhhhhhh---hhhhhhccccccccccCCCC------cccchhhhhhhccccCcccchhhcCCccccCc
Confidence 3678999999999988874 79999999999999765432 23457999999999999999999988876556
Q ss_pred EEEEec
Q 001925 189 LRACFG 194 (995)
Q Consensus 189 LRASfG 194 (995)
+++-||
T Consensus 443 ~r~glG 448 (975)
T KOG0112|consen 443 HRIGLG 448 (975)
T ss_pred cccccc
Confidence 676666
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=58.36 E-value=5.9 Score=49.66 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=63.1
Q ss_pred CCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 001925 100 HLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 100 ~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL 179 (995)
.+.+|.-.|-. .|+-+.+-..+.-. | .-+|.+||+|..++..|+-. -|-|.|...|.|..|..++
T Consensus 290 sisnv~plqp~-~~~~nn~v~~tSss-L--~~l~s~yg~v~s~wtlr~~N-----------~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 290 SISNVFPLQPK-QSLENNAVNLTSSS-L--ATLCSDYGSVASAWTLRDLN-----------MALVSFSSVESAILALDAL 354 (1007)
T ss_pred eecccccCcch-hhhhcccccchHHH-H--HHHHHhhcchhhheeccccc-----------chhhhhHHHHHHHHhhhhh
Confidence 44555555443 35556666655444 4 58999999999999887643 4789999999999999999
Q ss_pred CCCCC--CCeEEEEEeccCC
Q 001925 180 HSYIL--DGRPLRACFGTTK 197 (995)
Q Consensus 180 NG~~L--dGRvLRASfGTTK 197 (995)
.|..+ -|-+.||.|+.+-
T Consensus 355 ~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 355 QGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cCCcccccCCceeEEecccc
Confidence 99876 5888999998873
No 195
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=58.27 E-value=5.4 Score=43.99 Aligned_cols=51 Identities=24% Similarity=0.653 Sum_probs=37.1
Q ss_pred CCCCCCcccCCCc-cCCCccccC-CCCchhhhhHHHHHHhhhccCCCCCCc--ccccccc
Q 001925 6 EKTCPLCAEEMDL-TDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCP--ACRTAYD 61 (995)
Q Consensus 6 d~~CPLC~EelD~-TD~~F~PC~-CGYQIC~fC~h~I~~~aek~~~~grCP--ACRrpYd 61 (995)
|..||+|.-+-=+ -|..|+-=| |=++||--|..||.. .....|| +|-+-.-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs-----~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS-----RGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc-----CCCCCCCCccHHHHHH
Confidence 4689999765322 234555555 999999999999974 4678999 9977443
No 196
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=56.54 E-value=4.1 Score=31.83 Aligned_cols=26 Identities=42% Similarity=0.944 Sum_probs=15.3
Q ss_pred CCCCCcccCCCccCCCcccc-CCCCch
Q 001925 7 KTCPLCAEEMDLTDQQLKPC-NCGYEI 32 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC-~CGYQI 32 (995)
..||+|-.+....|...+-| .||||+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCcceeccCCEEeCCcccccC
Confidence 57999999999999999999 789884
No 197
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=56.17 E-value=7.8 Score=48.55 Aligned_cols=54 Identities=24% Similarity=0.660 Sum_probs=41.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCC------CchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCG------YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CG------YQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
|+..|-+|--|=-..|..|-||+|. +|-|+-=|-. .....+|--|.-+|.=++|
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~-------~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWME-------CSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHh-------cCCCcceeeecceeeeeee
Confidence 4589999998887889999999994 3546555533 2467899999999876665
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.65 E-value=6.1 Score=46.67 Aligned_cols=48 Identities=27% Similarity=0.582 Sum_probs=29.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
+-.+||.|.|.||..=.-+.|-.|.+-.=.-|..+- .+-.||-||---
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--------~~~scpvcR~~q 221 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--------WDSSCPVCRYCQ 221 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc--------ccCcChhhhhhc
Confidence 347999999999976666666665443222333332 345677777533
No 199
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=54.73 E-value=7.3 Score=27.28 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.4
Q ss_pred ccccccCCCCCCC-CCcccc
Q 001925 199 CHAWIRNMPCSVP-DCLYLH 217 (995)
Q Consensus 199 Cs~FLRn~~C~Np-dCmYLH 217 (995)
|.+|. .|.|. +|.|.|
T Consensus 2 Ck~~~---~C~~~~~C~f~H 18 (19)
T PF14608_consen 2 CKFGP---NCTNGDNCPFSH 18 (19)
T ss_pred CcCcC---CCCCCCcCccCC
Confidence 55443 39998 999999
No 200
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.46 E-value=9.3 Score=42.86 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=36.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
.+.+||+|-|.=.+ .+.-=+||+..|-+|-..-+. .+---.||+|-.+-.
T Consensus 238 ~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRL----WDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC---Ceeeccccceeehhhhhhhhc----chhhcccCccCCCCc
Confidence 45799999998766 555567999988888876553 123468999987543
No 201
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=53.18 E-value=6.5 Score=45.93 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=36.1
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
+.|-||.| .|+..+-=+||+-+|--|+..--+ .++..-||.||-+.
T Consensus 370 eLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~----sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQD----SDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhc----cCCCcccccccchHHHHHHHhhcc----cCCCCCCCceeeEe
Confidence 46888876 577888888999999999987643 23466799999866
No 202
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.72 E-value=11 Score=47.12 Aligned_cols=58 Identities=22% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCCCCcccCCCccCCCccccC---CCCchhhhhHHHHHH---hhhcc--------------CCCCCCccccccccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCN---CGYEICVWCWNHIME---MAEKD--------------GTEGRCPACRTAYDKEK 64 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~---CGYQIC~fC~h~I~~---~aek~--------------~~~grCPACRrpYdee~ 64 (995)
..|+.|.-++...|..|--|+ |+...|--|.-...+ .+.|. --..-||-||..|++-.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 467888877766666666666 555444433322111 00000 12345999999998754
No 203
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.18 E-value=23 Score=41.42 Aligned_cols=67 Identities=22% Similarity=0.619 Sum_probs=46.4
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCC--CCCc--cccccccccchhccccch
Q 001925 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTE--GRCP--ACRTAYDKEKIVGMAANC 72 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~--grCP--ACRrpYdee~I~~~~~~~ 72 (995)
+..+..|.+|++..+. .+.-=.||+.+|..||...+...=-.+.. -+|| .|+..-+++.|...+...
T Consensus 67 ~~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~~ 137 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSDK 137 (444)
T ss_pred CCccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCCH
Confidence 3456899999999976 34444799999999998755421112233 2466 799999988887664443
No 204
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.02 E-value=13 Score=42.12 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=35.2
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+.+|++|...+-. . .--.|++..|.-|...-. + +..+-|+-||.|+++.-+
T Consensus 7 ~~eC~IC~nt~n~-P---v~l~C~HkFCyiCiKGsy----~-ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNC-P---VNLYCFHKFCYICIKGSY----K-NDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCc-C---ccccccchhhhhhhcchh----h-cCCCCCceecCCCCcchh
Confidence 5789999998843 2 334788986666655442 1 334559999999998743
No 205
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=46.51 E-value=1.2 Score=52.05 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=55.6
Q ss_pred EEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEe-ecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001925 112 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSIS-RTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 112 VYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvIn-rd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+-|.++|+.++-|- | ..+.++||.+..+... .+.. ...+-|||...+.+..||..++|.++....++
T Consensus 83 ~Qirnippql~wev-l--d~Ll~qyg~ve~~eqvnt~~e---------tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 83 IQIRNIPPQLQWEV-L--DSLLAQYGTVENCEQVNTDSE---------TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred hhHhcCCHHHHHHH-H--HHHHhccCCHhHhhhhccchH---------HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 56778888886654 5 5799999999987653 3322 33467899999999999999999999998888
Q ss_pred EEe
Q 001925 191 ACF 193 (995)
Q Consensus 191 ASf 193 (995)
+.|
T Consensus 151 ~~Y 153 (584)
T KOG2193|consen 151 VGY 153 (584)
T ss_pred ccc
Confidence 875
No 206
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.95 E-value=9.1 Score=48.76 Aligned_cols=49 Identities=27% Similarity=0.695 Sum_probs=31.6
Q ss_pred ccCCCCCCcccCCCccCCCc--cccCCCCchhhhhHHHHH-----HhhhccCCCCCCccccccc
Q 001925 4 KAEKTCPLCAEEMDLTDQQL--KPCNCGYEICVWCWNHIM-----EMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F--~PC~CGYQIC~fC~h~I~-----~~aek~~~~grCPACRrpY 60 (995)
++-++|++|+--+|..|+.+ +.|+ - |-|++- .- .+.....+||-||.++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~--T-----CknKFH~~CLyKW-f~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCA--T-----CKNKFHTRCLYKW-FASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccc--h-----hhhhhhHHHHHHH-HHhcCCCCCCcccccc
Confidence 45689999999999999988 6661 0 000000 00 0235688999999754
No 207
>smart00356 ZnF_C3H1 zinc finger.
Probab=44.74 E-value=18 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.636 Sum_probs=17.3
Q ss_pred CCcccccccCCCCCC-CCCcccccC
Q 001925 196 TKYCHAWIRNMPCSV-PDCLYLHDF 219 (995)
Q Consensus 196 TKYCs~FLRn~~C~N-pdCmYLHE~ 219 (995)
+..|..| +.-.|.. +.|.|+|+.
T Consensus 4 ~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 4579999 4446775 789999974
No 208
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=11 Score=46.31 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=34.2
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
..|++|+.++=..-.--.--.||+-||.-|...+ .+..|| |.+ |+..+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--------yn~scp-~~~--De~~~ 59 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--------YNASCP-TKR--DEDSS 59 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--------hhccCC-CCc--cccch
Confidence 5799999888553222233489999999999988 467898 655 44443
No 209
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=43.94 E-value=20 Score=41.64 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=54.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001925 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
+|-.+||+||-+..+++|||+--.-.|-- .|.+|+...++... .++|+|.|...+.....+-+..|--..|.|+
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~-~~~dmKFFENR~NG-----QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLA-QFADMKFFENRTNG-----QSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHH-HHhhhhhhhcccCC-----cccceEEEEecchHHHHHHHHhcccceecCC
Confidence 46789999999999999998632222211 34455543333221 3678999999998888888888888889887
Q ss_pred EEE
Q 001925 188 PLR 190 (995)
Q Consensus 188 vLR 190 (995)
.-.
T Consensus 153 ~P~ 155 (498)
T KOG4849|consen 153 SPT 155 (498)
T ss_pred CCe
Confidence 543
No 210
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=41.37 E-value=14 Score=42.39 Aligned_cols=40 Identities=28% Similarity=0.693 Sum_probs=27.9
Q ss_pred CCCCCCcccCCCccCCCccccCC---CCchhhhhHHHHHHhhhccCCCCCCcccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNC---GYEICVWCWNHIMEMAEKDGTEGRCPACR 57 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~C---GYQIC~fC~h~I~~~aek~~~~grCPACR 57 (995)
...||+|.-.- --||.| ||-.|--|-.+-+. ..|+||---
T Consensus 300 ~~~CpvClk~r------~Nptvl~vSGyVfCY~Ci~~Yv~------~~~~CPVT~ 342 (357)
T KOG0826|consen 300 REVCPVCLKKR------QNPTVLEVSGYVFCYPCIFSYVV------NYGHCPVTG 342 (357)
T ss_pred cccChhHHhcc------CCCceEEecceEEeHHHHHHHHH------hcCCCCccC
Confidence 47899997654 347776 99977777655542 479998433
No 211
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=40.27 E-value=11 Score=27.99 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=18.6
Q ss_pred cCCcccccccCCCCCC-CCCccccc
Q 001925 195 TTKYCHAWIRNMPCSV-PDCLYLHD 218 (995)
Q Consensus 195 TTKYCs~FLRn~~C~N-pdCmYLHE 218 (995)
.|+-|..|++.-.|.. ..|.|+|.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 3678999999999999 89999996
No 212
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=39.80 E-value=17 Score=40.47 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=76.0
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001925 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
...||+.+...+.++++ ..+|.++|.+....+....... ...++.||-|..++.+..|+...-...++++.+
T Consensus 89 ~~~f~g~~s~~~e~~~~---~~~~~~~g~~~~~~~S~~~~~~-----~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 89 STFFVGELSENIEESED---DNFSSEAGLRVDARSSSLEDSL-----SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccchhhccc---cccchhhcCcccchhhhhcccc-----ccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 45689999888866643 3789999988888776543221 245678999999999999999888789999999
Q ss_pred EEEeccCCcccccccCCCCCCC-----CCccccc-CCCCCCCccHHHHH
Q 001925 190 RACFGTTKYCHAWIRNMPCSVP-----DCLYLHD-FGSQEDSFTKDEIV 232 (995)
Q Consensus 190 RASfGTTKYCs~FLRn~~C~Np-----dCmYLHE-~g~e~DsfTKeEm~ 232 (995)
...+.+..- -+.|... .+.+.=. .+.-..+.|++|+.
T Consensus 161 ~~dl~~~~~------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 161 EKDLNTRRG------LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cCccccccc------ccccchhcccccCccccceeecccccccchHHHh
Confidence 999887754 2223221 2333222 33445567777776
No 213
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=39.46 E-value=15 Score=35.67 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=35.2
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
++..|.+|..+|.+-+..-..| .|++.||.-|--.. +....-+|-.|++
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~-----~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYS-----KKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEET-----SSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcC-----CCCCCEEChhhHH
Confidence 5679999999998877666888 89999998887652 2334557877776
No 214
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=38.99 E-value=17 Score=45.08 Aligned_cols=51 Identities=22% Similarity=0.611 Sum_probs=35.9
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
..||.|-... +.-.-=+||+-+|--|-..-.++ -.-+||.|-++|....|.
T Consensus 644 LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~et-----RqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 644 LKCSVCNTRW----KDAVITKCGHVFCEECVQTRYET-----RQRKCPKCNAAFGANDVH 694 (698)
T ss_pred eeCCCccCch----hhHHHHhcchHHHHHHHHHHHHH-----hcCCCCCCCCCCCccccc
Confidence 5799997322 22233389999888887666553 368999999999876653
No 215
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=28 Score=32.89 Aligned_cols=54 Identities=24% Similarity=0.709 Sum_probs=29.1
Q ss_pred CCCCCCcccCCCccCCC--c--cccCCCCchhhhhHHH--HHH-hhhccCCCCCCccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQ--L--KPCNCGYEICVWCWNH--IME-MAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~--F--~PC~CGYQIC~fC~h~--I~~-~aek~~~~grCPACRrpY 60 (995)
+++|-||--+||-+=.. | --||==.-+|.-++|. |.+ .+.+ ..++.||-||+.+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~-tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP-TSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc-cccccCCcchhee
Confidence 44666666666542110 0 0133323467777743 544 3333 4569999999965
No 216
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.35 E-value=21 Score=30.14 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=9.8
Q ss_pred CCCCCccccccccccch
Q 001925 49 TEGRCPACRTAYDKEKI 65 (995)
Q Consensus 49 ~~grCPACRrpYdee~I 65 (995)
.+++||-|.|+++++.-
T Consensus 19 ~~~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 19 AKGCCPLCGRPLDEEHR 35 (54)
T ss_dssp -SEE-TTT--EE-HHHH
T ss_pred CCCcCCCCCCCCCHHHH
Confidence 45599999999998864
No 217
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=37.23 E-value=34 Score=28.85 Aligned_cols=46 Identities=24% Similarity=0.625 Sum_probs=29.2
Q ss_pred CCCCcccCCCccCCCccccCCCC---chhhhhHHHHHHhhhccCCCCCCcccc
Q 001925 8 TCPLCAEEMDLTDQQLKPCNCGY---EICVWCWNHIMEMAEKDGTEGRCPACR 57 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~CGY---QIC~fC~h~I~~~aek~~~~grCPACR 57 (995)
.|-+|.++.+..+..+.||.|.- -+=.-|..+=+.. .....||-|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~----~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE----SGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH----cCCCcCCCCC
Confidence 48899997777788889999941 1113444444331 1234899884
No 218
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=36.96 E-value=18 Score=30.08 Aligned_cols=33 Identities=30% Similarity=0.659 Sum_probs=19.2
Q ss_pred cCCCCCC--cccCCCccCCCc---cccC-CCCchhhhhH
Q 001925 5 AEKTCPL--CAEEMDLTDQQL---KPCN-CGYEICVWCW 37 (995)
Q Consensus 5 ~d~~CPL--C~EelD~TD~~F---~PC~-CGYQIC~fC~ 37 (995)
+-..||- |-..+-..+..- .-|+ |++++|.-|-
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~ 55 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCG 55 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSST
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccC
Confidence 3458977 988886666555 4698 9999888885
No 219
>PHA02862 5L protein; Provisional
Probab=36.43 E-value=29 Score=36.10 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=31.6
Q ss_pred CCCCCcccCCCccCCCccccCCC------CchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCG------YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CG------YQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
..|=+|.++=|. ...||.|. +|-| ..+=+ +....-.||-|+.+|.=
T Consensus 3 diCWIC~~~~~e---~~~PC~C~GS~K~VHq~C---L~~WI----n~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDE---RNNFCGCNEEYKVVHIKC---MQLWI----NYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCC---CcccccccCcchhHHHHH---HHHHH----hcCCCcCccCCCCeEEE
Confidence 569999998543 26999992 3544 33333 23467899999999953
No 220
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=23 Score=39.54 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=44.2
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhcc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~ 68 (995)
-.||.|-..|.-|=.--..=+||.-+|.-|-.+++. .++.||-|-++..+..|+..
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir------~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR------KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhcc------ccccccCCCCcCcccceEee
Confidence 479999999964333223338999999999999984 57899999999999888643
No 221
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.69 E-value=24 Score=40.70 Aligned_cols=48 Identities=23% Similarity=0.612 Sum_probs=32.4
Q ss_pred CCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCC-Cccccccccc
Q 001925 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGR-CPACRTAYDK 62 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~gr-CPACRrpYde 62 (995)
.|.||.|++..-|+. +--||++..=.-|-+.=+- ...+ ||-|++....
T Consensus 231 ~CaIClEdY~~Gdkl-RiLPC~H~FH~~CIDpWL~------~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKL-RILPCSHKFHVNCIDPWLT------QTRTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCee-eEecCCCchhhccchhhHh------hcCccCCCCCCcCCC
Confidence 899999999776654 3366666544666665542 2334 9999995543
No 222
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=28 Score=40.12 Aligned_cols=54 Identities=26% Similarity=0.620 Sum_probs=36.8
Q ss_pred cCCCCCCcccCCCccCCC-----cccc-CCCCchhhhhHHHHHHh-hhccCCCCCCccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQ-----LKPC-NCGYEICVWCWNHIMEM-AEKDGTEGRCPACRTAY 60 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~-----F~PC-~CGYQIC~fC~h~I~~~-aek~~~~grCPACRrpY 60 (995)
.|.+|-||||.. .|+. |.-- +|-+-.|+-|...=+.- .........||-||.+-
T Consensus 160 ~~k~CGICme~i--~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETI--NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhc--cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 478999999987 4555 6444 48899888887665421 00123468999999854
No 223
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.85 E-value=27 Score=39.10 Aligned_cols=61 Identities=23% Similarity=0.491 Sum_probs=41.4
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhccccchHHH
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERA 75 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~~~~eel 75 (995)
-.||+---+|.-+-+-+.-=.|| |.|-...+.+. ..--|+-|-.+|+++.++.+..+.|++
T Consensus 112 fiCPvtgleMng~~~F~~l~~CG---cV~SerAlKei-----kas~C~~C~a~y~~~dvIvlNg~~E~~ 172 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCG---CVFSERALKEI-----KASVCHVCGAAYQEDDVIVLNGTEEDV 172 (293)
T ss_pred eecccccceecceEEEEEEeccc---eeccHHHHHHh-----hhccccccCCcccccCeEeeCCCHHHH
Confidence 36999888886655444433455 34555555443 356799999999999887777777654
No 224
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=34.29 E-value=7.9 Score=43.38 Aligned_cols=60 Identities=23% Similarity=0.586 Sum_probs=45.1
Q ss_pred CcccCCCCCCccc-CCCccCCCcccc-CCCCchhhhhHHHHHHhhh-ccCCCCCCccccccccc
Q 001925 2 SDKAEKTCPLCAE-EMDLTDQQLKPC-NCGYEICVWCWNHIMEMAE-KDGTEGRCPACRTAYDK 62 (995)
Q Consensus 2 sDe~d~~CPLC~E-elD~TD~~F~PC-~CGYQIC~fC~h~I~~~ae-k~~~~grCPACRrpYde 62 (995)
-|.+...|+.|.- +|.+.++..- | .||..+|..|-++++.+-. .+....-|+.|-..|.+
T Consensus 164 PD~ea~~C~~C~~~~Ftl~~RRHH-CR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 164 PDSEATECMVCGCTEFTLSERRHH-CRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred CcccceecccCCCccccHHHHHHH-HHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence 3667789999999 9999988777 7 8999999999988543211 12222369999888865
No 225
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=33.02 E-value=22 Score=28.65 Aligned_cols=25 Identities=28% Similarity=0.781 Sum_probs=22.6
Q ss_pred CCCCcccCCCccCCCcccc-CCCCch
Q 001925 8 TCPLCAEEMDLTDQQLKPC-NCGYEI 32 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC-~CGYQI 32 (995)
.|+.|-..+..+|.-|+-| .||.|+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceEc
Confidence 4999999999999999999 999874
No 226
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=32.49 E-value=21 Score=31.59 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=25.1
Q ss_pred cCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 26 CNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 26 C~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
-+||+-||.-||.--+ .+ -||-|-++++...+
T Consensus 23 ~pCgH~I~~~~f~~~r-------Yn-gCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 23 LPCGHLICDNCFPGER-------YN-GCPFCGTPFEFDDP 54 (55)
T ss_pred ccccceeeccccChhh-------cc-CCCCCCCcccCCCC
Confidence 4789999999998542 33 49999999987654
No 227
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=31.09 E-value=43 Score=35.21 Aligned_cols=54 Identities=30% Similarity=0.665 Sum_probs=34.0
Q ss_pred cCCCCCCcccCCCccCCCcccc-----CCCCchhh------hhHHHHHHhhhccC-------------------------
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPC-----NCGYEICV------WCWNHIMEMAEKDG------------------------- 48 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC-----~CGYQIC~------fC~h~I~~~aek~~------------------------- 48 (995)
||..||+|||-= -.-.+.-| .|.--||- -|+++++.+..+..
T Consensus 1 ed~~CpICme~P--HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 1 EDVTCPICMEHP--HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CCccCceeccCC--CceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 468999999964 33344555 24444553 47778776443321
Q ss_pred CCCCCccccccc
Q 001925 49 TEGRCPACRTAY 60 (995)
Q Consensus 49 ~~grCPACRrpY 60 (995)
.+-.||-||-+.
T Consensus 79 ~~L~CPLCRG~V 90 (162)
T PF07800_consen 79 PELACPLCRGEV 90 (162)
T ss_pred ccccCccccCce
Confidence 366899999854
No 228
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=30.38 E-value=1.2e+02 Score=33.00 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=49.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
.+.|.|.|||+.-.-.|| ++..-+-|.|--..|-++ +.+-|.|.++||-+-||+.++...+
T Consensus 115 e~RVvVsGLp~SgSWQDL---KDHmReaGdvCfadv~rD------------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDL---KDHMREAGDVCFADVQRD------------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHH---HHHHHhhCCeeeeeeecc------------cceeeeeeehhhHHHHHHhhccccc
Confidence 456789999999888886 388888999887777654 2468999999999999999987544
No 229
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.27 E-value=32 Score=40.35 Aligned_cols=48 Identities=25% Similarity=0.668 Sum_probs=35.2
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+-.|-+|+.-|=. .-.. +||+-.|.+|.++-++ .+.-||-||-+|-+-
T Consensus 84 ef~c~vc~~~l~~---pv~t-pcghs~c~~Cl~r~ld------~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 84 EFECCVCSRALYP---PVVT-PCGHSFCLECLDRSLD------QETECPLCRDELVEL 131 (398)
T ss_pred hhhhhhhHhhcCC---Cccc-cccccccHHHHHHHhc------cCCCCcccccccccc
Confidence 4578888655521 2223 9999999999888653 567899999999763
No 230
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=29.90 E-value=42 Score=29.97 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEec
Q 001925 116 GLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG 194 (995)
Q Consensus 116 GLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfG 194 (995)
|--..+...+|+ .++...+.|.+-.|.+=... ..+.||+-.. +.|.+++..|++..+.||.|++..+
T Consensus 8 Gr~dg~~~~~iv---~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 8 GRKDGLTPRDIV---GAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp SGGGT--HHHHH---HHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccccCCCHHHHH---HHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 334456677777 57777766654333221110 1256888776 5799999999999999999998753
No 231
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=29.35 E-value=2.9e+02 Score=27.19 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=46.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCc-eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGK-IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
+..|-|...|+....-+.|. .+.+.+-+ |..++|.++... .++-|=|.|.+.++|..--...||..+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~--~f~~~~~~~i~~~riird~~p-------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLL--FFGAPFREDIEHIRIIRDGTP-------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHH--HhhhcccccEEEEEEeeCCCC-------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34566666666654444441 34444433 456777776532 4789999999999999999999998773
No 232
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.21 E-value=31 Score=44.64 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=33.2
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCC-----chhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 5 AEKTCPLCAEEMDLTDQQLKPCN-CGY-----EICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~-CGY-----QIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+...||-|-... ..+.|+ ||- ..|..|-... ....||.|-.+-...
T Consensus 625 g~RfCpsCG~~t-----~~frCP~CG~~Te~i~fCP~CG~~~--------~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKET-----FYRRCPFCGTHTEPVYRCPRCGIEV--------EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcC-----CcccCCCCCCCCCcceeCccccCcC--------CCCcCCCCCCCCCcc
Confidence 346899999985 668997 984 4788883322 346799999866544
No 233
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=28.18 E-value=21 Score=42.39 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=32.1
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHH
Q 001925 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIM 41 (995)
Q Consensus 2 sDe~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~ 41 (995)
.|-+...||+|.+.|-+|-+..-===||-.+|.+|-.-|-
T Consensus 176 DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred CCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcC
Confidence 3556689999999999987665433799999999987764
No 234
>PRK11595 DNA utilization protein GntX; Provisional
Probab=28.18 E-value=43 Score=35.58 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=25.9
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
..|.+|-+.++.. ...||..|+..+.- ...+||.|-++..
T Consensus 6 ~~C~~C~~~~~~~---------~~~lC~~C~~~l~~------~~~~C~~Cg~~~~ 45 (227)
T PRK11595 6 GLCWLCRMPLALS---------HWGICSVCSRALRT------LKTCCPQCGLPAT 45 (227)
T ss_pred CcCccCCCccCCC---------CCcccHHHHhhCCc------ccCcCccCCCcCC
Confidence 4699998877432 12488899888731 2356777777643
No 235
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=27.94 E-value=32 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
.-.||.|-+.+|.... +.++.+.=..+..+..||-|..
T Consensus 2 ~f~CP~C~~~~~~~~L---------------~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL---------------VEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH---------------HHHHHhHCcCCCCCccCCCchh
Confidence 3579999998776321 1344432223345789999987
No 236
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=27.46 E-value=41 Score=28.14 Aligned_cols=41 Identities=27% Similarity=0.827 Sum_probs=21.8
Q ss_pred CCCcccCCCccCCCccccCC-C-----CchhhhhHHHHHHhhhccCCCCCCccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNC-G-----YEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~C-G-----YQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
|=||.++-+..+....||.| | ++-|+.=|-.. ..+..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~-------~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE-------SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH-------HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh-------cCCCcCCCC
Confidence 56888888766677899999 4 25455444332 234568776
No 238
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.42 E-value=39 Score=25.66 Aligned_cols=21 Identities=48% Similarity=1.111 Sum_probs=14.5
Q ss_pred CCCCcccCCCccCCCccccC-CCCc
Q 001925 8 TCPLCAEEMDLTDQQLKPCN-CGYE 31 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~-CGYQ 31 (995)
.||-|-.++-+ .-+-|+ |||.
T Consensus 2 ~CP~C~~~V~~---~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPE---SAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchh---hcCcCCCCCCC
Confidence 58888877754 556676 7775
No 239
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=27.38 E-value=11 Score=46.67 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=26.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEec
Q 001925 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG 194 (995)
Q Consensus 159 rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfG 194 (995)
++++.+.=.+.++|.+-|..+-+.. .+.+-+=.+
T Consensus 184 ggy~L~cda~n~~AV~rLr~~K~Rp--~KPlavmv~ 217 (711)
T TIGR00143 184 GGFHLACDARNDEVVERLRLRKNRP--LKPFAVMSP 217 (711)
T ss_pred CcceeecCCCCHHHHHHHHHHhCCC--CCCEEEEEC
Confidence 5678888888899999999998885 366655443
No 240
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=27.15 E-value=24 Score=38.73 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCCCcccccCCCCCC
Q 001925 198 YCHAWIRNMPCSVPDCLYLHDFGSQED 224 (995)
Q Consensus 198 YCs~FLRn~~C~NpdCmYLHE~g~e~D 224 (995)
.|.+||-| +|.||+|.|+|-.-.++.
T Consensus 263 acryfllg-kcnnpncryvhihysena 288 (377)
T KOG1492|consen 263 ACRYFLLG-KCNNPNCRYVHIHYSENA 288 (377)
T ss_pred hhhhhhhc-cCCCCCceEEEEeecCCC
Confidence 58888866 699999999997776655
No 241
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=26.99 E-value=29 Score=40.84 Aligned_cols=24 Identities=33% Similarity=0.887 Sum_probs=16.8
Q ss_pred CCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 21 QQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 21 ~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
+..|-| .|||+- ..-.|+||+|+.
T Consensus 5 ~~~y~C~~Cg~~~--------------~~~~g~Cp~C~~ 29 (454)
T TIGR00416 5 KSKFVCQHCGADS--------------PKWQGKCPACHA 29 (454)
T ss_pred CCeEECCcCCCCC--------------ccccEECcCCCC
Confidence 445678 788881 124699999976
No 242
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=26.74 E-value=27 Score=43.32 Aligned_cols=50 Identities=26% Similarity=0.779 Sum_probs=38.7
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001925 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
..|++|++ .| .+.+=.||+-.|.-||-.-++. ..+..||-||...++...
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~----~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQ----SENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhcccc----ccCCCCcHHHHHHHHHHH
Confidence 68999999 33 4667789999999999877653 234489999997776654
No 243
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.44 E-value=57 Score=35.14 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=40.6
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001925 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
|++-.||.- +..-.-++|+ ++-+ |++..|.+-+..... +.-.|.+||||.+.+.|..|++.-+
T Consensus 109 ~~~r~v~~K--~td~ql~~l~---qw~~--~k~~nv~mr~~~~k~----~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLN---QWAS--GKGHNVKMRRHGNKA----HPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHH---HHhc--ccceEeeccccCCCC----CCCCCceEEEeecHHHHHhhhhhhh
Confidence 445567766 2221223443 4444 999999986543321 1247899999999999999988654
No 244
>PF12773 DZR: Double zinc ribbon
Probab=26.27 E-value=50 Score=27.07 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=24.2
Q ss_pred CCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001925 9 CPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 9 CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
||-|-++++. +.++|.+|=..+.. .+.....||+|.++++..
T Consensus 1 Cp~Cg~~~~~----------~~~fC~~CG~~l~~---~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 1 CPHCGTPNPD----------DAKFCPHCGTPLPP---PDQSKKICPNCGAENPPN 42 (50)
T ss_pred CCCcCCcCCc----------cccCChhhcCChhh---ccCCCCCCcCCcCCCcCC
Confidence 6666666644 23456666666531 133456788888865543
No 245
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=24.81 E-value=40 Score=44.28 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=12.6
Q ss_pred CCCCCCCCCcchhhhHhhhc
Q 001925 862 TPSSQLNPFEHEARLQLLMQ 881 (995)
Q Consensus 862 ~f~~ql~~~~n~~rlqllmQ 881 (995)
.|..||.++ --|=|.||.-
T Consensus 110 s~lgalkyl-PhavlkLLeN 128 (2365)
T COG5178 110 SYLGALKYL-PHAVLKLLEN 128 (2365)
T ss_pred hhhhhhhhc-hHHHHHHHhc
Confidence 577788877 4456666654
No 246
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.40 E-value=34 Score=38.35 Aligned_cols=55 Identities=22% Similarity=0.564 Sum_probs=32.5
Q ss_pred ccCCCCCCcccCCC--ccCCCccccCCC------CchhhhhHHHHHHhhhc--cCCCCCCcccccccc
Q 001925 4 KAEKTCPLCAEEMD--LTDQQLKPCNCG------YEICVWCWNHIMEMAEK--DGTEGRCPACRTAYD 61 (995)
Q Consensus 4 e~d~~CPLC~EelD--~TD~~F~PC~CG------YQIC~fC~h~I~~~aek--~~~~grCPACRrpYd 61 (995)
|.|..|=+|.+-=+ ..--+-.||.|. +|-|+. +=+++++. .-..--||.|+.+|-
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~---rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLS---RWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHH---HHHhHHhcCCCCceeechhhcchhe
Confidence 55789999976421 111245899994 454544 44442221 123346999999995
No 247
>PF12773 DZR: Double zinc ribbon
Probab=23.83 E-value=68 Score=26.29 Aligned_cols=29 Identities=41% Similarity=0.803 Sum_probs=23.9
Q ss_pred cccCCCCCCcccCCCccCCCcccc-CCCCc
Q 001925 3 DKAEKTCPLCAEEMDLTDQQLKPC-NCGYE 31 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC-~CGYQ 31 (995)
+++...||.|-.+|...+...+.| .||+.
T Consensus 9 ~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 9 PDDAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred CccccCChhhcCChhhccCCCCCCcCCcCC
Confidence 456789999999998777888888 78875
No 248
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.63 E-value=2.1e+02 Score=34.57 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=55.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001925 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.++|.|.++|.-++--|+|+ +.+.+= .|..|.|.|+... .++.+-|+|.+.+||..=-...||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~---F~~~~~~~I~~irivRd~~p-------nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLR---FCASFIKQISDIRIVRDGMP-------NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHH---HHHHHhhhhheeEEeecCCC-------ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999984 555443 4678999996543 4789999999999999999999998763
No 249
>PRK11823 DNA repair protein RadA; Provisional
Probab=22.58 E-value=42 Score=39.37 Aligned_cols=24 Identities=38% Similarity=0.832 Sum_probs=16.6
Q ss_pred CCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 21 QQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 21 ~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
+..|-| .|||+- ..-.|+||+|..
T Consensus 5 ~~~y~C~~Cg~~~--------------~~~~g~Cp~C~~ 29 (446)
T PRK11823 5 KTAYVCQECGAES--------------PKWLGRCPECGA 29 (446)
T ss_pred CCeEECCcCCCCC--------------cccCeeCcCCCC
Confidence 455668 688872 124699999976
No 250
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=22.29 E-value=6.4 Score=29.68 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=14.1
Q ss_pred chhhhhHHHHHHhhhccCCCCCCccccc
Q 001925 31 EICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 31 QIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
+-|.-||+.|.++.........||.|-+
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 4588899988653222233567888854
No 251
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=65 Score=39.07 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.4
Q ss_pred CCCCCCcccCCCcc
Q 001925 6 EKTCPLCAEEMDLT 19 (995)
Q Consensus 6 d~~CPLC~EelD~T 19 (995)
..+|++||-++|+.
T Consensus 571 t~dC~ICMt~I~l~ 584 (636)
T KOG0828|consen 571 TNDCVICMTPIDLR 584 (636)
T ss_pred cccceEecccccee
Confidence 36899999998763
No 252
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=21.48 E-value=40 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.963 Sum_probs=18.8
Q ss_pred CCCCCcccCC--------CccCCCc-cccCCCCch
Q 001925 7 KTCPLCAEEM--------DLTDQQL-KPCNCGYEI 32 (995)
Q Consensus 7 ~~CPLC~Eel--------D~TD~~F-~PC~CGYQI 32 (995)
..||-|-.+. .+.|.-| +.|+||+.|
T Consensus 14 ~~Cp~CGN~~vGngEG~liV~edtfkRtCkCGfni 48 (49)
T PF12677_consen 14 CKCPKCGNDKVGNGEGTLIVEEDTFKRTCKCGFNI 48 (49)
T ss_pred ccCcccCCcEeecCcceEEEeccceeeeecccccc
Confidence 4799997653 4555555 899999875
No 253
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=47 Score=38.59 Aligned_cols=35 Identities=26% Similarity=0.746 Sum_probs=27.3
Q ss_pred CCCCCcccCCCccC-CCccccCCCCchhhhhHHHHH
Q 001925 7 KTCPLCAEEMDLTD-QQLKPCNCGYEICVWCWNHIM 41 (995)
Q Consensus 7 ~~CPLC~EelD~TD-~~F~PC~CGYQIC~fC~h~I~ 41 (995)
..||.|.-.++++. =+..-|.||+|+|.-|....+
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK 342 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchh
Confidence 58999988776655 456899999998888886553
Done!